Query 002352
Match_columns 932
No_of_seqs 543 out of 3814
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 22:49:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 9.6E-99 3E-103 934.2 59.3 772 17-843 1-815 (823)
2 3o21_A Glutamate receptor 3; p 100.0 2.7E-49 9.3E-54 444.6 39.2 371 15-403 2-379 (389)
3 4f11_A Gamma-aminobutyric acid 100.0 6.2E-48 2.1E-52 441.6 35.0 386 13-425 9-422 (433)
4 3hsy_A Glutamate receptor 2; l 100.0 7.4E-48 2.5E-52 431.5 33.9 366 17-403 1-373 (376)
5 3om0_A Glutamate receptor, ion 100.0 1.6E-46 5.3E-51 424.0 35.7 372 17-404 3-381 (393)
6 3saj_A Glutamate receptor 1; r 100.0 3.1E-46 1.1E-50 419.8 36.9 366 14-403 6-376 (384)
7 3h6g_A Glutamate receptor, ion 100.0 4.6E-46 1.6E-50 420.6 37.7 371 16-403 2-382 (395)
8 4gpa_A Glutamate receptor 4; P 100.0 2.1E-45 7.3E-50 414.6 40.0 371 15-403 2-377 (389)
9 2e4u_A Metabotropic glutamate 100.0 1.3E-44 4.6E-49 425.6 41.9 391 15-432 11-485 (555)
10 1jdp_A NPR-C, atrial natriuret 100.0 8.1E-45 2.8E-49 416.6 38.8 377 15-425 6-414 (441)
11 1dp4_A Atrial natriuretic pept 100.0 5.2E-45 1.8E-49 417.8 36.1 381 17-430 1-419 (435)
12 3sm9_A Mglur3, metabotropic gl 100.0 1.8E-44 6.3E-49 415.1 37.9 385 15-424 10-478 (479)
13 3qek_A NMDA glutamate receptor 100.0 1E-44 3.5E-49 407.7 33.4 353 15-423 2-384 (384)
14 3ks9_A Mglur1, metabotropic gl 100.0 3.3E-43 1.1E-47 406.5 39.4 393 15-430 14-496 (496)
15 3mq4_A Mglur7, metabotropic gl 100.0 3.2E-44 1.1E-48 414.3 27.7 384 15-421 13-480 (481)
16 3qel_B Glutamate [NMDA] recept 100.0 7.6E-40 2.6E-44 362.7 27.7 346 16-422 2-363 (364)
17 3h5l_A Putative branched-chain 100.0 1.3E-39 4.4E-44 370.8 27.1 372 12-429 8-414 (419)
18 3i45_A Twin-arginine transloca 100.0 1.6E-38 5.5E-43 357.8 32.9 350 15-402 2-364 (387)
19 4f06_A Extracellular ligand-bi 100.0 3E-38 1E-42 353.0 34.4 347 15-396 2-361 (371)
20 3td9_A Branched chain amino ac 100.0 3.5E-37 1.2E-41 344.2 32.5 340 16-399 14-364 (366)
21 4gnr_A ABC transporter substra 100.0 3.1E-37 1.1E-41 342.8 31.7 336 14-393 3-349 (353)
22 3i09_A Periplasmic branched-ch 100.0 1.2E-36 4.2E-41 341.0 33.8 331 16-386 2-339 (375)
23 3ipc_A ABC transporter, substr 100.0 4.8E-37 1.7E-41 341.7 29.8 342 17-398 1-352 (356)
24 3hut_A Putative branched-chain 100.0 2.9E-36 9.8E-41 335.7 33.6 343 16-397 2-353 (358)
25 4evq_A Putative ABC transporte 100.0 7.2E-36 2.4E-40 334.8 33.6 347 11-397 9-363 (375)
26 3n0w_A ABC branched chain amin 100.0 2.9E-36 9.8E-41 338.4 29.8 332 15-386 3-343 (379)
27 3n0x_A Possible substrate bind 100.0 2.7E-36 9.3E-41 337.8 29.0 332 16-388 2-348 (374)
28 1usg_A Leucine-specific bindin 100.0 5.1E-36 1.7E-40 332.0 29.8 336 17-391 1-344 (346)
29 3lkb_A Probable branched-chain 100.0 2.3E-36 7.8E-41 341.0 26.4 353 15-402 4-379 (392)
30 4eyg_A Twin-arginine transloca 100.0 2E-35 6.7E-40 330.3 33.6 343 15-397 3-359 (368)
31 3eaf_A ABC transporter, substr 100.0 1.5E-35 5.2E-40 333.9 29.3 346 16-401 2-375 (391)
32 3lop_A Substrate binding perip 100.0 3E-35 1E-39 328.2 30.4 336 16-388 3-352 (364)
33 3sg0_A Extracellular ligand-bi 100.0 1.9E-34 6.4E-39 324.7 22.3 343 13-391 22-384 (386)
34 1pea_A Amidase operon; gene re 100.0 1E-32 3.5E-37 310.1 33.9 342 15-392 4-354 (385)
35 3snr_A Extracellular ligand-bi 100.0 3.5E-33 1.2E-37 311.3 24.4 340 14-391 3-360 (362)
36 2h4a_A YRAM (HI1655); perplasm 99.9 5.6E-27 1.9E-31 253.5 21.5 303 20-388 2-312 (325)
37 3ckm_A YRAM (HI1655), LPOA; pe 99.9 7.4E-27 2.5E-31 255.6 21.8 309 18-392 2-319 (327)
38 1yae_A Glutamate receptor, ion 99.9 1.5E-26 5.1E-31 251.6 14.8 277 435-809 10-305 (312)
39 3g3k_A Glutamate receptor, ion 99.9 1.4E-24 4.9E-29 229.3 14.0 238 436-795 2-258 (259)
40 2a5s_A N-methyl-D-aspartate re 99.9 2.6E-25 8.8E-30 238.2 6.2 243 433-795 24-283 (284)
41 4h5g_A Amino acid ABC superfam 99.9 5E-24 1.7E-28 222.7 13.6 225 437-790 11-238 (243)
42 1pb7_A N-methyl-D-aspartate re 99.9 2.6E-24 9E-29 231.2 11.5 234 438-795 41-291 (292)
43 2rc8_A Glutamate [NMDA] recept 99.9 3.3E-24 1.1E-28 230.8 10.6 213 467-795 67-293 (294)
44 4gvo_A LMO2349 protein; struct 99.9 7.7E-24 2.6E-28 221.2 12.7 224 436-790 7-236 (243)
45 2v3u_A Glutamate receptor delt 99.9 4.9E-23 1.7E-27 218.2 16.2 240 436-795 1-264 (265)
46 4f3p_A Glutamine-binding perip 99.9 7.2E-22 2.5E-26 207.1 17.3 225 434-792 20-245 (249)
47 3k4u_A Binding component of AB 99.9 4.1E-22 1.4E-26 208.4 15.0 229 436-794 3-233 (245)
48 1mqi_A Glutamate receptor 2; G 99.9 7.5E-22 2.6E-26 208.8 16.8 236 437-795 3-262 (263)
49 3kzg_A Arginine 3RD transport 99.9 4.2E-22 1.4E-26 207.2 14.5 224 437-794 2-235 (237)
50 3i6v_A Periplasmic His/Glu/Gln 99.9 5E-22 1.7E-26 205.9 13.6 221 436-797 3-225 (232)
51 3del_B Arginine binding protei 99.9 2.3E-21 8E-26 202.1 15.6 222 436-794 9-237 (242)
52 3hv1_A Polar amino acid ABC up 99.9 2.1E-21 7.3E-26 206.0 15.6 222 436-790 19-249 (268)
53 3kbr_A Cyclohexadienyl dehydra 99.9 7E-22 2.4E-26 205.7 11.5 223 436-789 13-237 (239)
54 1ii5_A SLR1257 protein; membra 99.9 9.5E-21 3.3E-25 196.1 17.8 220 437-790 3-227 (233)
55 3tql_A Arginine-binding protei 99.8 7.2E-21 2.5E-25 196.0 15.1 219 438-788 2-227 (227)
56 4dz1_A DALS D-alanine transpor 99.8 1E-20 3.5E-25 199.6 16.0 222 436-790 27-254 (259)
57 3h7m_A Sensor protein; histidi 99.8 1.5E-20 5E-25 194.8 15.3 222 435-790 8-231 (234)
58 1wdn_A GLNBP, glutamine bindin 99.8 2.9E-20 1E-24 191.3 16.6 220 438-791 3-224 (226)
59 3mpk_A Virulence sensor protei 99.8 1.7E-20 5.7E-25 198.9 13.6 220 437-790 31-253 (267)
60 2y7i_A STM4351; arginine-bindi 99.8 4.4E-20 1.5E-24 190.5 16.2 218 436-789 4-228 (229)
61 1lst_A Lysine, arginine, ornit 99.8 3.5E-20 1.2E-24 192.8 15.1 222 437-790 3-233 (239)
62 2iee_A ORF2, probable ABC tran 99.8 7.7E-21 2.6E-25 202.0 9.5 222 436-789 19-246 (271)
63 4eq9_A ABC transporter substra 99.8 3.3E-20 1.1E-24 193.8 13.1 222 436-790 6-236 (246)
64 2q88_A EHUB, putative ABC tran 99.8 9.1E-20 3.1E-24 192.0 13.5 223 437-788 12-239 (257)
65 2pyy_A Ionotropic glutamate re 99.8 1.7E-19 5.9E-24 185.8 14.4 221 437-790 2-223 (228)
66 2pvu_A ARTJ; basic amino acid 99.8 4.5E-19 1.5E-23 188.5 17.9 221 435-790 39-263 (272)
67 3qax_A Probable ABC transporte 99.8 9E-19 3.1E-23 185.5 16.7 220 436-791 29-255 (268)
68 2vha_A Periplasmic binding tra 99.8 5.6E-19 1.9E-23 189.3 14.3 226 437-793 16-252 (287)
69 4i62_A Amino acid ABC transpor 99.8 4.8E-19 1.7E-23 187.6 13.7 223 437-790 38-265 (269)
70 2yln_A Putative ABC transporte 99.8 6.2E-19 2.1E-23 188.4 13.6 219 437-791 56-279 (283)
71 1xt8_A Putative amino-acid tra 99.8 9.4E-19 3.2E-23 188.1 13.0 218 437-789 43-265 (292)
72 2yjp_A Putative ABC transporte 99.8 1.3E-18 4.4E-23 186.8 13.5 218 437-789 54-276 (291)
73 2v25_A Major cell-binding fact 99.7 1.7E-16 5.7E-21 166.9 10.2 214 437-788 37-258 (259)
74 2ozz_A Hypothetical protein YH 98.7 1.7E-08 5.9E-13 100.6 6.2 182 465-788 27-223 (231)
75 3n5l_A Binding protein compone 98.7 5.6E-08 1.9E-12 104.2 10.3 122 663-788 104-242 (310)
76 3p7i_A PHND, subunit of alkylp 98.6 1E-07 3.5E-12 102.4 10.8 122 663-788 114-251 (321)
77 3brq_A HTH-type transcriptiona 98.4 5.2E-06 1.8E-10 88.2 16.6 210 15-242 16-233 (296)
78 2qu7_A Putative transcriptiona 98.3 5E-06 1.7E-10 88.1 14.6 207 16-242 6-220 (288)
79 1dbq_A Purine repressor; trans 98.3 2.5E-05 8.4E-10 82.7 18.8 211 16-242 5-220 (289)
80 2qh8_A Uncharacterized protein 98.3 2.3E-05 7.9E-10 83.6 18.5 189 15-217 5-202 (302)
81 2h3h_A Sugar ABC transporter, 98.2 3.1E-05 1E-09 83.1 18.4 208 19-244 2-216 (313)
82 3d02_A Putative LACI-type tran 98.2 5.2E-05 1.8E-09 80.7 19.7 210 17-243 3-222 (303)
83 3ksm_A ABC-type sugar transpor 98.2 2.9E-05 1E-09 81.4 16.9 209 19-244 1-221 (276)
84 3lkv_A Uncharacterized conserv 98.2 7.1E-05 2.4E-09 79.7 19.8 206 14-233 4-221 (302)
85 3l49_A ABC sugar (ribose) tran 98.2 4.2E-05 1.4E-09 80.9 17.7 209 16-244 3-224 (291)
86 3rot_A ABC sugar transporter, 98.1 2.8E-05 9.5E-10 82.7 15.7 204 18-237 3-216 (297)
87 2rjo_A Twin-arginine transloca 98.1 6.7E-05 2.3E-09 81.2 18.8 205 17-234 4-222 (332)
88 2fep_A Catabolite control prot 98.1 5.7E-05 1.9E-09 79.9 17.6 210 15-242 13-228 (289)
89 3brs_A Periplasmic binding pro 98.1 9E-05 3.1E-09 78.3 19.1 211 17-244 4-224 (289)
90 2h0a_A TTHA0807, transcription 98.1 1.5E-05 5.3E-10 83.6 12.7 204 20-243 1-214 (276)
91 3h75_A Periplasmic sugar-bindi 98.1 0.00013 4.3E-09 79.6 20.4 215 18-242 3-238 (350)
92 1tjy_A Sugar transport protein 98.1 6.9E-05 2.4E-09 80.4 17.8 206 20-244 5-222 (316)
93 3c3k_A Alanine racemase; struc 98.1 0.00011 3.8E-09 77.4 18.6 205 16-242 6-217 (285)
94 3dbi_A Sugar-binding transcrip 98.1 7.2E-05 2.5E-09 81.2 17.0 210 16-242 59-275 (338)
95 2vk2_A YTFQ, ABC transporter p 98.1 9.4E-05 3.2E-09 78.9 17.7 210 18-242 2-224 (306)
96 2fvy_A D-galactose-binding per 98.0 0.00015 5.2E-09 77.3 19.2 204 19-232 3-226 (309)
97 3o1i_D Periplasmic protein TOR 98.0 5.6E-05 1.9E-09 80.6 15.6 206 16-234 3-218 (304)
98 2o20_A Catabolite control prot 98.0 8.5E-05 2.9E-09 80.3 17.0 210 16-243 61-273 (332)
99 2hsg_A Glucose-resistance amyl 98.0 7.6E-05 2.6E-09 80.7 16.6 209 16-242 58-272 (332)
100 2x7x_A Sensor protein; transfe 98.0 9.6E-05 3.3E-09 79.6 17.0 211 16-244 4-222 (325)
101 2iks_A DNA-binding transcripti 98.0 0.00011 3.7E-09 77.9 16.9 208 16-242 18-230 (293)
102 2fn9_A Ribose ABC transporter, 98.0 0.00012 4.2E-09 77.3 17.2 197 19-233 3-215 (290)
103 3g1w_A Sugar ABC transporter; 98.0 0.00021 7.3E-09 76.0 19.2 212 18-245 4-222 (305)
104 2rgy_A Transcriptional regulat 98.0 4.3E-05 1.5E-09 80.9 13.5 209 16-242 6-222 (290)
105 3d8u_A PURR transcriptional re 98.0 9.9E-05 3.4E-09 77.3 16.2 208 18-243 3-215 (275)
106 3clk_A Transcription regulator 98.0 5.4E-05 1.8E-09 80.1 14.2 208 16-242 6-218 (290)
107 3k4h_A Putative transcriptiona 98.0 7.5E-05 2.6E-09 79.0 15.2 211 15-242 5-225 (292)
108 3gbv_A Putative LACI-family tr 98.0 9.7E-05 3.3E-09 78.6 16.2 215 15-245 5-233 (304)
109 3lft_A Uncharacterized protein 98.0 0.00041 1.4E-08 73.4 20.6 200 18-233 2-210 (295)
110 3bbl_A Regulatory protein of L 98.0 6.9E-05 2.3E-09 79.2 14.3 207 18-242 4-221 (287)
111 3egc_A Putative ribose operon 97.9 9.6E-05 3.3E-09 78.2 14.9 210 15-242 5-219 (291)
112 3l6u_A ABC-type sugar transpor 97.9 0.00022 7.6E-09 75.4 17.7 210 15-244 5-228 (293)
113 1qpz_A PURA, protein (purine n 97.9 0.00035 1.2E-08 75.8 19.0 211 16-242 56-271 (340)
114 2ioy_A Periplasmic sugar-bindi 97.9 0.00052 1.8E-08 72.1 19.5 205 20-244 3-216 (283)
115 8abp_A L-arabinose-binding pro 97.9 0.0003 1E-08 74.9 17.5 215 18-245 2-233 (306)
116 3gyb_A Transcriptional regulat 97.9 4.6E-05 1.6E-09 80.1 10.7 204 16-242 3-209 (280)
117 3o74_A Fructose transport syst 97.9 0.00031 1.1E-08 73.2 17.1 206 19-244 3-215 (272)
118 3ctp_A Periplasmic binding pro 97.9 9.3E-05 3.2E-09 80.0 13.3 203 16-242 58-264 (330)
119 3k9c_A Transcriptional regulat 97.8 0.00066 2.3E-08 71.6 19.2 207 15-242 9-218 (289)
120 3gv0_A Transcriptional regulat 97.8 0.00023 8E-09 75.0 15.4 209 16-242 6-221 (288)
121 1jx6_A LUXP protein; protein-l 97.8 0.00045 1.5E-08 74.9 17.2 209 15-233 40-258 (342)
122 3kke_A LACI family transcripti 97.8 0.00031 1.1E-08 74.7 15.4 208 15-242 12-230 (303)
123 2x26_A Periplasmic aliphatic s 97.7 0.00016 5.4E-09 77.2 12.6 118 663-788 97-231 (308)
124 3hcw_A Maltose operon transcri 97.7 0.00058 2E-08 72.3 16.6 210 15-243 4-226 (295)
125 3m9w_A D-xylose-binding peripl 97.7 0.00077 2.6E-08 72.0 17.6 200 18-234 2-213 (313)
126 3kjx_A Transcriptional regulat 97.7 0.00048 1.7E-08 74.7 16.0 211 15-243 65-281 (344)
127 3jy6_A Transcriptional regulat 97.7 0.00088 3E-08 70.0 17.2 205 15-243 4-215 (276)
128 3tb6_A Arabinose metabolism tr 97.7 0.00027 9.3E-09 74.8 13.3 208 19-243 16-235 (298)
129 3g85_A Transcriptional regulat 97.7 0.00019 6.6E-09 75.7 11.9 209 15-243 8-222 (289)
130 3uif_A Sulfonate ABC transport 97.7 0.00015 5E-09 79.1 10.8 63 663-731 111-178 (348)
131 3qk7_A Transcriptional regulat 97.6 0.0004 1.4E-08 73.5 13.8 208 16-242 4-220 (294)
132 3bil_A Probable LACI-family tr 97.6 0.0011 3.6E-08 72.1 16.7 208 16-242 64-274 (348)
133 3un6_A Hypothetical protein sa 97.6 7.7E-05 2.6E-09 81.0 7.5 120 663-789 145-283 (341)
134 1byk_A Protein (trehalose oper 97.5 0.0026 9E-08 65.4 18.0 199 19-244 3-205 (255)
135 3h5o_A Transcriptional regulat 97.5 0.0018 6E-08 70.1 17.2 209 16-243 60-273 (339)
136 3hs3_A Ribose operon repressor 97.5 0.0011 3.7E-08 69.4 14.3 200 15-243 7-212 (277)
137 3e3m_A Transcriptional regulat 97.5 0.003 1E-07 68.7 18.2 210 16-243 68-284 (355)
138 3e61_A Putative transcriptiona 97.4 0.00075 2.6E-08 70.6 12.6 202 16-243 6-211 (277)
139 2dri_A D-ribose-binding protei 97.4 0.0053 1.8E-07 63.8 19.0 205 20-244 3-215 (271)
140 3miz_A Putative transcriptiona 97.4 0.00033 1.1E-08 74.4 9.6 210 15-242 10-230 (301)
141 3huu_A Transcription regulator 97.4 0.0012 4.2E-08 70.1 13.8 206 15-242 19-235 (305)
142 3uug_A Multiple sugar-binding 97.4 0.0017 5.9E-08 69.8 15.2 206 17-237 2-232 (330)
143 3cs3_A Sugar-binding transcrip 97.4 0.0032 1.1E-07 65.7 16.5 200 16-243 6-211 (277)
144 3ksx_A Nitrate transport prote 97.4 0.00097 3.3E-08 71.6 12.8 68 663-736 123-195 (324)
145 3jvd_A Transcriptional regulat 97.4 0.0044 1.5E-07 66.7 17.8 199 16-242 62-264 (333)
146 2fqx_A Membrane lipoprotein TM 97.3 0.0057 2E-07 65.3 17.5 207 17-243 3-221 (318)
147 3s99_A Basic membrane lipoprot 97.3 0.01 3.6E-07 63.9 19.4 205 10-233 18-230 (356)
148 4fe7_A Xylose operon regulator 97.2 0.005 1.7E-07 68.5 16.8 209 14-242 21-236 (412)
149 2hqb_A Transcriptional activat 97.2 0.029 1E-06 59.0 21.3 196 16-232 3-204 (296)
150 1gud_A ALBP, D-allose-binding 97.2 0.012 4.2E-07 61.6 18.2 212 20-245 3-228 (288)
151 3qsl_A Putative exported prote 97.1 0.0017 5.6E-08 70.4 11.3 136 480-737 59-205 (346)
152 3ix1_A N-formyl-4-amino-5-amin 97.1 0.00041 1.4E-08 73.7 6.2 78 465-552 14-95 (302)
153 2f5x_A BUGD; periplasmic bindi 97.1 0.0038 1.3E-07 66.0 12.8 122 662-788 122-276 (312)
154 1jye_A Lactose operon represso 97.0 0.017 5.7E-07 62.6 18.2 206 16-243 59-272 (349)
155 2dvz_A BUGE, putative exported 96.9 0.0048 1.6E-07 65.3 12.2 121 663-788 127-280 (314)
156 2k1e_A Water soluble analogue 96.8 0.0021 7.1E-08 55.5 6.6 77 578-658 19-97 (103)
157 4ddd_A Immunogenic protein; ss 96.8 0.0024 8.4E-08 68.4 8.7 59 663-727 138-203 (327)
158 2qpq_A Protein BUG27; alpha/be 96.7 0.0065 2.2E-07 64.0 11.1 119 663-788 114-267 (301)
159 3h5t_A Transcriptional regulat 96.6 0.0094 3.2E-07 65.0 11.8 212 16-242 66-301 (366)
160 2ih3_C Voltage-gated potassium 96.3 0.0059 2E-07 54.5 6.6 75 579-657 41-117 (122)
161 3qi7_A Putative transcriptiona 96.2 0.088 3E-06 56.0 15.5 217 16-236 10-252 (371)
162 2a9h_A Voltage-gated potassium 96.0 0.017 5.7E-07 53.8 7.9 77 579-659 64-142 (155)
163 4h33_A LMO2059 protein; bilaye 95.7 0.029 9.8E-07 51.1 8.1 57 602-658 42-100 (137)
164 3ho7_A OXYR; beta-alpha-barrel 95.6 0.052 1.8E-06 54.2 10.8 69 471-553 25-93 (232)
165 3eff_K Voltage-gated potassium 95.6 0.026 8.9E-07 51.7 7.6 73 580-656 21-95 (139)
166 2x7q_A Ca3427, possible thiami 95.6 0.045 1.5E-06 58.3 10.8 87 663-759 112-209 (321)
167 3fzv_A Probable transcriptiona 95.5 0.32 1.1E-05 50.8 17.1 181 470-775 108-295 (306)
168 3ixl_A Amdase, arylmalonate de 95.5 0.15 5.1E-06 51.4 13.2 119 74-221 58-193 (240)
169 2g29_A Nitrate transport prote 95.4 0.031 1.1E-06 62.1 8.6 103 667-776 151-272 (417)
170 3jv9_A OXYR, transcriptional r 95.3 0.24 8.3E-06 48.4 14.2 69 471-553 18-86 (219)
171 2ql3_A Probable transcriptiona 95.1 0.69 2.4E-05 44.8 16.9 68 471-552 19-86 (209)
172 4ab5_A Transcriptional regulat 94.9 0.06 2E-06 53.2 8.4 70 470-553 21-90 (222)
173 3oxn_A Putative transcriptiona 94.8 0.14 4.9E-06 51.4 11.2 86 435-553 16-101 (241)
174 1zbm_A Hypothetical protein AF 94.8 0.094 3.2E-06 54.5 10.0 98 667-776 99-209 (280)
175 2zzv_A ABC transporter, solute 94.4 0.24 8.3E-06 53.5 12.2 59 661-730 164-222 (361)
176 1us5_A Putative GLUR0 ligand b 94.3 0.18 6E-06 53.3 10.7 58 663-726 123-187 (314)
177 3ldc_A Calcium-gated potassium 93.9 0.17 5.8E-06 41.2 7.3 52 603-654 28-81 (82)
178 2y7p_A LYSR-type regulatory pr 93.7 0.36 1.2E-05 47.6 11.2 70 470-553 21-90 (218)
179 3ouf_A Potassium channel prote 93.7 0.1 3.4E-06 44.2 5.8 58 602-659 31-90 (97)
180 2dgd_A 223AA long hypothetical 93.2 0.62 2.1E-05 46.3 11.9 80 139-221 96-184 (223)
181 1i6a_A OXYR, hydrogen peroxide 93.1 0.3 1E-05 48.0 9.5 70 470-553 18-87 (219)
182 1atg_A MODA, periplasmic molyb 93.1 1 3.5E-05 44.3 13.5 69 473-552 15-89 (231)
183 2q67_A Potassium channel prote 93.0 0.21 7.3E-06 43.6 7.0 55 603-657 49-105 (114)
184 2fyi_A HTH-type transcriptiona 92.7 3.4 0.00012 40.5 16.8 70 470-552 27-96 (228)
185 4gx0_A TRKA domain protein; me 92.1 0.24 8.2E-06 57.3 8.0 118 603-727 51-179 (565)
186 1orq_C Potassium channel; volt 92.0 0.29 9.9E-06 48.8 7.6 74 579-656 145-220 (223)
187 1al3_A Cys regulon transcripti 92.0 7.1 0.00024 40.8 19.1 193 470-789 106-305 (324)
188 1p7b_A Integral membrane chann 92.0 0.33 1.1E-05 51.2 8.1 61 600-660 93-155 (333)
189 3pjs_K KCSA, voltage-gated pot 91.8 0.015 5.2E-07 55.0 -2.1 58 599-656 63-122 (166)
190 2xed_A Putative maleate isomer 91.7 1.5 5E-05 45.0 12.6 119 75-221 82-221 (273)
191 3fxq_A LYSR type regulator of 91.6 2 6.9E-05 44.6 14.1 180 470-775 105-292 (305)
192 2hxr_A HTH-type transcriptiona 91.5 3.4 0.00012 40.7 15.1 69 470-552 43-111 (238)
193 2pfy_A Putative exported prote 91.5 0.96 3.3E-05 47.3 11.2 55 661-726 129-183 (301)
194 3r26_A Molybdate-binding perip 91.2 2.3 7.9E-05 42.5 13.4 113 663-787 107-232 (237)
195 3vou_A ION transport 2 domain 91.2 0.39 1.3E-05 44.2 6.9 54 602-655 51-106 (148)
196 2pfz_A Putative exported prote 91.1 0.96 3.3E-05 47.3 10.7 56 661-727 128-183 (301)
197 1ixc_A CBNR, LYSR-type regulat 91.0 2.1 7.3E-05 44.0 13.4 69 470-552 104-172 (294)
198 1xl4_A Inward rectifier potass 90.9 0.49 1.7E-05 49.2 8.1 60 599-658 78-139 (301)
199 2i49_A Bicarbonate transporter 90.9 0.35 1.2E-05 53.6 7.4 106 666-776 153-280 (429)
200 2hzl_A Trap-T family sorbitol/ 90.8 1.3 4.4E-05 47.8 11.7 57 661-729 163-219 (365)
201 2esn_A Probable transcriptiona 90.6 2.3 7.8E-05 44.3 13.3 103 664-775 193-302 (310)
202 4esw_A Pyrimidine biosynthesis 90.4 0.83 2.8E-05 48.8 9.7 63 663-731 103-168 (342)
203 3gzg_A Molybdate-binding perip 89.9 1.4 4.7E-05 44.7 10.3 70 473-553 38-113 (253)
204 2h98_A HTH-type transcriptiona 88.9 8.7 0.0003 39.9 16.2 69 470-552 103-171 (313)
205 3beh_A MLL3241 protein; transm 88.7 0.46 1.6E-05 51.1 6.0 74 579-656 141-216 (355)
206 1lnq_A MTHK channels, potassiu 88.5 0.29 9.9E-06 52.3 4.2 122 603-732 45-169 (336)
207 2qks_A KIR3.1-prokaryotic KIR 87.6 1.3 4.3E-05 46.5 8.3 57 603-659 78-136 (321)
208 1uth_A LYSR-type regulatory pr 86.9 4.6 0.00016 42.1 12.5 68 471-552 119-186 (315)
209 2h9b_A HTH-type transcriptiona 86.6 14 0.00049 38.1 16.2 69 470-552 103-171 (312)
210 1xs5_A 29 kDa protein, membran 84.8 13 0.00045 37.0 13.8 36 476-521 21-56 (241)
211 3kos_A HTH-type transcriptiona 84.4 8.6 0.0003 37.0 12.4 103 664-774 96-203 (219)
212 2r9r_B Paddle chimera voltage 82.9 2.1 7.3E-05 48.2 7.8 72 581-656 357-430 (514)
213 2fqx_A Membrane lipoprotein TM 81.4 14 0.00048 38.6 13.2 126 20-152 131-264 (318)
214 1sw5_A Osmoprotection protein 80.8 3.1 0.0001 42.7 7.6 113 663-786 125-252 (275)
215 3bfj_A 1,3-propanediol oxidore 80.1 10 0.00035 40.9 11.8 88 141-228 23-114 (387)
216 3ukm_A Potassium channel subfa 79.9 2.1 7E-05 43.7 5.6 67 602-668 200-275 (280)
217 1twy_A ABC transporter, peripl 78.6 31 0.001 34.7 14.6 71 471-552 41-112 (290)
218 3onm_A Transcriptional regulat 77.9 18 0.00063 35.3 12.3 68 470-553 40-107 (238)
219 3s99_A Basic membrane lipoprot 77.5 14 0.00049 39.2 11.7 91 18-117 149-239 (356)
220 2zsk_A PH1733, 226AA long hypo 75.5 8.6 0.00029 37.9 8.7 79 76-183 66-144 (226)
221 3ox4_A Alcohol dehydrogenase 2 74.8 4.1 0.00014 44.0 6.6 91 139-229 19-111 (383)
222 2pju_A Propionate catabolism o 74.4 21 0.00073 35.0 11.0 136 57-234 39-174 (225)
223 2q5c_A NTRC family transcripti 74.2 27 0.00092 33.4 11.6 159 19-235 5-163 (196)
224 3k6v_A Solute-binding protein 72.7 49 0.0017 35.0 14.2 69 474-553 59-133 (354)
225 1nh8_A ATP phosphoribosyltrans 72.1 16 0.00053 37.4 9.5 101 663-775 121-224 (304)
226 2hpg_A ABC transporter, peripl 71.1 18 0.00061 38.0 10.4 59 661-729 148-206 (327)
227 2xwv_A Sialic acid-binding per 70.8 25 0.00085 36.5 11.4 60 661-730 133-192 (312)
228 1jfl_A Aspartate racemase; alp 70.3 6.8 0.00023 38.7 6.6 83 71-182 62-144 (228)
229 3s81_A Putative aspartate race 68.6 8.3 0.00028 39.2 6.8 43 70-113 86-128 (268)
230 1rrm_A Lactaldehyde reductase; 68.1 7.7 0.00026 41.9 6.9 88 142-229 22-111 (386)
231 2hqb_A Transcriptional activat 67.4 32 0.0011 35.3 11.3 122 19-153 127-248 (296)
232 2czl_A Hypothetical protein TT 67.3 10 0.00035 38.4 7.4 59 666-731 91-150 (272)
233 3tmg_A Glycine betaine, L-prol 66.6 26 0.00087 35.8 10.2 41 472-523 31-71 (280)
234 2jfn_A Glutamate racemase; cel 66.5 17 0.00058 37.2 8.8 42 72-113 73-114 (285)
235 1r9l_A Glycine betaine-binding 66.3 18 0.00063 37.5 9.2 41 473-523 24-64 (309)
236 3m9w_A D-xylose-binding peripl 65.6 52 0.0018 33.7 12.8 79 152-233 3-84 (313)
237 1vlj_A NADH-dependent butanol 64.7 16 0.00053 39.8 8.5 88 141-228 33-123 (407)
238 3szp_A Transcriptional regulat 64.4 5.1 0.00017 40.8 4.4 66 470-552 104-169 (291)
239 2gzm_A Glutamate racemase; enz 63.7 17 0.00057 36.9 8.0 115 77-219 59-187 (267)
240 3um7_A Potassium channel subfa 63.4 13 0.00046 38.3 7.1 54 603-656 224-285 (309)
241 2eq5_A 228AA long hypothetical 63.0 8.1 0.00028 38.2 5.4 110 79-220 71-186 (228)
242 3hhf_B Transcriptional regulat 62.5 2.7 9.4E-05 40.4 1.8 65 471-552 21-85 (213)
243 2oho_A Glutamate racemase; iso 62.1 14 0.00049 37.6 7.2 40 74-113 65-104 (273)
244 1o2d_A Alcohol dehydrogenase, 61.7 21 0.00073 38.1 8.8 87 141-228 31-120 (371)
245 2l69_A Rossmann 2X3 fold prote 61.5 40 0.0014 26.9 7.8 64 133-205 58-121 (134)
246 3sya_A G protein-activated inw 61.5 17 0.00058 38.0 7.6 60 601-660 89-152 (340)
247 1p99_A Hypothetical protein PG 60.9 38 0.0013 34.8 10.2 36 476-521 56-91 (295)
248 3l6g_A Betaine ABC transporter 60.5 16 0.00056 36.7 7.2 43 471-524 16-58 (256)
249 3qvl_A Putative hydantoin race 59.9 51 0.0017 32.8 10.6 162 19-219 2-185 (245)
250 3um7_A Potassium channel subfa 59.2 7.9 0.00027 40.0 4.5 54 602-655 114-169 (309)
251 2dwu_A Glutamate racemase; iso 59.0 43 0.0015 34.0 10.1 124 75-226 61-199 (276)
252 3uhj_A Probable glycerol dehyd 58.9 10 0.00036 40.8 5.7 74 142-219 44-117 (387)
253 2rin_A Putative glycine betain 58.9 16 0.00054 37.8 7.0 61 663-729 105-181 (298)
254 2de3_A Dibenzothiophene desulf 58.3 4.9 0.00017 43.1 3.0 120 660-788 108-298 (365)
255 3cij_A UPF0100 protein AF_0094 57.7 1.3E+02 0.0045 30.4 14.0 68 474-552 21-94 (295)
256 1mkz_A Molybdenum cofactor bio 57.7 35 0.0012 31.8 8.5 64 152-217 11-78 (172)
257 2hxw_A Major antigenic peptide 57.2 42 0.0014 32.7 9.7 67 474-552 17-90 (237)
258 3dbi_A Sugar-binding transcrip 57.2 24 0.00082 36.9 8.3 89 142-233 52-144 (338)
259 2klu_A T-cell surface glycopro 55.4 27 0.00093 26.1 5.4 14 819-832 13-26 (70)
260 2vvt_A Glutamate racemase; iso 55.1 32 0.0011 35.2 8.5 119 72-219 76-208 (290)
261 2l82_A Designed protein OR32; 53.1 95 0.0033 25.6 11.9 97 128-233 4-104 (162)
262 3ist_A Glutamate racemase; str 53.1 29 0.001 35.1 7.6 116 77-219 61-189 (269)
263 3o74_A Fructose transport syst 53.1 42 0.0014 33.4 9.1 79 152-233 3-83 (272)
264 2jfq_A Glutamate racemase; cel 52.6 36 0.0012 34.8 8.3 38 76-113 77-114 (286)
265 3spc_A Inward-rectifier K+ cha 52.5 36 0.0012 35.6 8.3 60 601-660 92-155 (343)
266 1h3d_A ATP-phosphoribosyltrans 52.3 73 0.0025 32.5 10.3 101 663-776 116-219 (299)
267 1zuw_A Glutamate racemase 1; ( 50.5 43 0.0015 33.9 8.4 120 72-219 55-188 (272)
268 3jy6_A Transcriptional regulat 50.3 35 0.0012 34.3 7.9 78 151-233 7-86 (276)
269 3gbv_A Putative LACI-family tr 50.0 33 0.0011 34.9 7.8 84 150-233 7-95 (304)
270 3ce9_A Glycerol dehydrogenase; 49.9 31 0.0011 36.5 7.6 109 126-245 12-122 (354)
271 3fd3_A Chromosome replication 49.6 34 0.0012 32.1 7.3 68 470-552 15-82 (208)
272 4dik_A Flavoprotein; TM0755, e 49.5 2E+02 0.0067 31.0 14.0 131 152-287 266-408 (410)
273 3l49_A ABC sugar (ribose) tran 49.4 34 0.0012 34.6 7.7 79 152-233 6-87 (291)
274 2xxp_A CPS2A; replication, pep 48.6 5.9 0.0002 42.9 1.6 63 661-732 26-95 (398)
275 3cfz_A UPF0100 protein MJ1186; 48.4 1.3E+02 0.0043 30.5 11.9 68 474-552 21-94 (292)
276 3h5o_A Transcriptional regulat 48.4 41 0.0014 35.1 8.4 87 143-233 54-142 (339)
277 1jq5_A Glycerol dehydrogenase; 48.3 27 0.00094 37.2 6.9 95 142-244 23-119 (370)
278 3hn0_A Nitrate transport prote 48.2 37 0.0013 34.5 7.7 61 669-736 94-160 (283)
279 3h75_A Periplasmic sugar-bindi 48.2 28 0.00097 36.6 7.0 80 151-233 3-87 (350)
280 1b73_A Glutamate racemase; iso 47.9 27 0.00091 35.1 6.4 119 72-219 52-181 (254)
281 3tb6_A Arabinose metabolism tr 47.3 45 0.0015 33.8 8.3 79 152-233 16-100 (298)
282 3uug_A Multiple sugar-binding 46.0 37 0.0013 35.1 7.5 79 152-233 4-85 (330)
283 4ef1_A Pheromone COB1/lipoprot 45.6 1.4E+02 0.0049 29.4 11.0 38 475-522 21-58 (246)
284 3l6u_A ABC-type sugar transpor 44.5 38 0.0013 34.2 7.2 80 151-233 8-90 (293)
285 3g1w_A Sugar ABC transporter; 44.4 32 0.0011 35.2 6.6 80 152-233 5-87 (305)
286 2ks1_B Epidermal growth factor 44.4 30 0.001 23.9 4.0 15 827-841 27-41 (44)
287 3ojc_A Putative aspartate/glut 44.1 20 0.00069 35.4 4.6 82 73-183 66-148 (231)
288 4edp_A ABC transporter, substr 43.4 1.1E+02 0.0037 31.7 10.8 82 700-786 215-298 (351)
289 3ukm_A Potassium channel subfa 42.1 21 0.00072 36.2 4.4 56 601-656 91-148 (280)
290 2l2t_A Receptor tyrosine-prote 42.0 35 0.0012 23.6 4.0 11 831-841 30-40 (44)
291 3rvy_A ION transport protein; 41.9 27 0.00092 35.7 5.4 58 601-658 178-243 (285)
292 3e3m_A Transcriptional regulat 41.7 52 0.0018 34.6 7.8 87 143-233 62-150 (355)
293 3rfq_A Pterin-4-alpha-carbinol 41.1 61 0.0021 30.5 7.2 64 152-217 31-98 (185)
294 1y5e_A Molybdenum cofactor bio 40.9 83 0.0028 29.1 8.1 66 150-217 12-81 (169)
295 8abp_A L-arabinose-binding pro 40.6 53 0.0018 33.4 7.6 78 152-233 3-83 (306)
296 4a8p_A Putrescine carbamoyltra 40.4 2.1E+02 0.0073 29.9 11.8 131 20-186 43-184 (355)
297 3out_A Glutamate racemase; str 40.3 31 0.0011 34.9 5.4 35 78-112 64-99 (268)
298 3ksm_A ABC-type sugar transpor 40.3 40 0.0014 33.7 6.4 122 17-146 126-254 (276)
299 3kke_A LACI family transcripti 39.8 43 0.0015 34.2 6.7 87 143-233 7-95 (303)
300 3i42_A Response regulator rece 39.6 1.4E+02 0.0047 25.1 9.2 57 166-231 14-72 (127)
301 2pjk_A 178AA long hypothetical 39.1 90 0.0031 29.1 8.1 67 149-217 13-90 (178)
302 3brq_A HTH-type transcriptiona 39.1 78 0.0027 31.8 8.6 84 146-233 14-102 (296)
303 2qsx_A Putative transcriptiona 38.4 1.3E+02 0.0045 28.4 9.8 70 699-775 140-211 (218)
304 4a8t_A Putrescine carbamoyltra 38.4 2.1E+02 0.0071 29.8 11.3 130 20-186 65-206 (339)
305 3jvd_A Transcriptional regulat 38.2 1.5E+02 0.0052 30.5 10.9 117 19-147 175-298 (333)
306 3lr1_A Tungstate ABC transport 38.1 20 0.00069 35.5 3.5 76 469-555 18-96 (236)
307 3p6l_A Sugar phosphate isomera 37.6 95 0.0032 30.8 8.7 94 139-233 24-129 (262)
308 3k9c_A Transcriptional regulat 37.5 51 0.0017 33.4 6.7 83 145-233 6-89 (289)
309 2is8_A Molybdopterin biosynthe 37.3 79 0.0027 29.0 7.3 63 153-217 3-71 (164)
310 2qip_A Protein of unknown func 36.8 1.4E+02 0.0047 27.3 9.0 92 140-233 36-134 (165)
311 2fn9_A Ribose ABC transporter, 36.8 59 0.002 32.7 7.1 79 152-233 3-84 (290)
312 3uhf_A Glutamate racemase; str 36.8 1E+02 0.0036 31.0 8.6 37 77-113 80-116 (274)
313 3mz1_A Putative transcriptiona 36.5 33 0.0011 34.7 5.1 66 470-552 101-166 (300)
314 1jye_A Lactose operon represso 36.5 69 0.0023 33.5 7.8 86 146-233 56-143 (349)
315 3hl0_A Maleylacetate reductase 36.4 66 0.0023 33.9 7.5 96 141-245 24-121 (353)
316 3pzy_A MOG; ssgcid, seattle st 36.2 65 0.0022 29.7 6.5 62 152-216 8-74 (164)
317 1tjy_A Sugar transport protein 36.2 36 0.0012 35.1 5.4 80 152-233 4-86 (316)
318 2fvy_A D-galactose-binding per 36.1 74 0.0025 32.3 7.8 79 152-233 3-85 (309)
319 3lmz_A Putative sugar isomeras 35.9 85 0.0029 31.1 8.0 94 139-233 32-127 (257)
320 3lte_A Response regulator; str 35.4 1.7E+02 0.0057 24.7 9.1 58 166-232 17-76 (132)
321 3qk7_A Transcriptional regulat 35.3 2E+02 0.0068 28.8 11.0 78 151-233 6-89 (294)
322 3k4h_A Putative transcriptiona 35.3 51 0.0018 33.2 6.4 80 150-233 7-93 (292)
323 2iks_A DNA-binding transcripti 34.7 37 0.0013 34.5 5.1 88 143-233 12-101 (293)
324 3jzd_A Iron-containing alcohol 34.5 62 0.0021 34.2 6.9 96 141-245 26-123 (358)
325 3gt7_A Sensor protein; structu 34.5 1.7E+02 0.0057 25.8 9.1 58 166-232 18-77 (154)
326 3bil_A Probable LACI-family tr 34.4 50 0.0017 34.6 6.3 78 152-233 67-146 (348)
327 1jx6_A LUXP protein; protein-l 34.4 71 0.0024 33.1 7.5 82 152-233 44-129 (342)
328 4euo_A ABC transporter, substr 34.3 3.8E+02 0.013 27.1 13.9 85 697-787 175-259 (320)
329 2yxb_A Coenzyme B12-dependent 34.1 2.7E+02 0.0092 25.3 10.5 86 152-244 19-108 (161)
330 3huu_A Transcription regulator 33.9 37 0.0013 34.7 5.0 87 143-233 14-107 (305)
331 3muq_A Uncharacterized conserv 33.9 30 0.001 34.2 4.0 76 469-555 18-96 (237)
332 3gd5_A Otcase, ornithine carba 33.9 2.3E+02 0.0078 29.2 10.7 131 20-186 50-188 (323)
333 3tpf_A Otcase, ornithine carba 33.5 2.3E+02 0.0078 29.0 10.6 130 20-186 38-177 (307)
334 3gl9_A Response regulator; bet 33.3 1.5E+02 0.0052 24.8 8.3 58 166-232 13-72 (122)
335 4ep1_A Otcase, ornithine carba 33.0 2.2E+02 0.0074 29.7 10.4 132 20-186 72-210 (340)
336 2o20_A Catabolite control prot 32.9 66 0.0023 33.3 6.9 84 146-233 58-143 (332)
337 2fep_A Catabolite control prot 32.9 75 0.0026 32.0 7.2 78 152-233 17-96 (289)
338 3d02_A Putative LACI-type tran 32.9 71 0.0024 32.3 7.0 80 152-233 5-87 (303)
339 1ta9_A Glycerol dehydrogenase; 32.4 60 0.002 35.6 6.5 96 141-244 81-178 (450)
340 2jfz_A Glutamate racemase; cel 32.1 75 0.0025 31.7 6.7 37 76-112 55-91 (255)
341 3iwt_A 178AA long hypothetical 31.8 1.2E+02 0.0041 28.1 7.7 63 153-217 17-90 (178)
342 3t6k_A Response regulator rece 31.7 1.7E+02 0.0059 25.0 8.6 58 166-232 15-74 (136)
343 3kjx_A Transcriptional regulat 31.5 1.1E+02 0.0039 31.6 8.5 78 152-233 69-148 (344)
344 3grc_A Sensor protein, kinase; 31.1 1.5E+02 0.005 25.5 8.0 57 166-231 17-75 (140)
345 2jwa_A Receptor tyrosine-prote 31.1 90 0.0031 21.5 4.6 22 819-840 18-39 (44)
346 3brs_A Periplasmic binding pro 31.1 3.3E+02 0.011 26.8 11.9 119 19-146 132-257 (289)
347 2ioy_A Periplasmic sugar-bindi 30.8 72 0.0025 32.0 6.6 79 152-233 2-83 (283)
348 3cvg_A Putative metal binding 30.8 47 0.0016 34.0 5.1 75 470-554 33-116 (294)
349 3egc_A Putative ribose operon 30.5 44 0.0015 33.8 4.9 80 150-233 7-88 (291)
350 3hcw_A Maltose operon transcri 30.0 1.9E+02 0.0065 29.0 9.7 116 20-147 133-259 (295)
351 1y80_A Predicted cobalamin bin 29.0 2.6E+02 0.0087 26.6 9.9 88 152-245 89-180 (210)
352 3cs3_A Sugar-binding transcrip 28.9 2.4E+02 0.0082 27.8 10.2 115 20-146 120-243 (277)
353 3l4e_A Uncharacterized peptida 28.6 94 0.0032 29.8 6.5 96 140-244 16-120 (206)
354 3rot_A ABC sugar transporter, 28.5 2E+02 0.0069 28.8 9.6 119 18-146 130-258 (297)
355 3u65_B TP33 protein; tetratric 28.3 74 0.0025 33.2 6.1 60 661-730 145-206 (328)
356 2dri_A D-ribose-binding protei 28.2 91 0.0031 31.0 6.8 79 152-233 2-83 (271)
357 3gyb_A Transcriptional regulat 28.0 82 0.0028 31.4 6.4 117 20-147 120-243 (280)
358 2pln_A HP1043, response regula 27.9 2E+02 0.0067 24.5 8.2 55 166-231 29-83 (137)
359 2lpm_A Two-component response 27.8 80 0.0027 27.4 5.3 67 156-233 12-80 (123)
360 4ecf_A ABC-type phosphate tran 27.7 1.1E+02 0.0037 30.6 7.1 71 472-553 18-91 (264)
361 3grf_A Ornithine carbamoyltran 27.7 4.9E+02 0.017 26.8 12.0 131 20-185 46-192 (328)
362 2g2c_A Putative molybdenum cof 27.7 1E+02 0.0034 28.4 6.3 63 153-217 7-78 (167)
363 3d8u_A PURR transcriptional re 27.3 87 0.003 31.1 6.4 78 152-233 4-83 (275)
364 3lua_A Response regulator rece 27.1 1.8E+02 0.006 25.0 7.8 56 166-230 15-75 (140)
365 1j3m_A The conserved hypotheti 27.0 3E+02 0.01 23.7 9.3 71 165-244 13-85 (129)
366 3e61_A Putative transcriptiona 26.9 83 0.0029 31.3 6.2 77 151-233 8-87 (277)
367 3to5_A CHEY homolog; alpha(5)b 26.5 1.7E+02 0.0058 25.7 7.3 67 155-232 15-83 (134)
368 2bon_A Lipid kinase; DAG kinas 26.5 2.8E+02 0.0097 28.6 10.3 93 128-230 12-104 (332)
369 1i4n_A Indole-3-glycerol phosp 26.4 3E+02 0.01 27.2 9.7 85 141-234 65-152 (251)
370 2l69_A Rossmann 2X3 fold prote 26.3 2.2E+02 0.0077 22.6 6.9 57 125-185 25-81 (134)
371 3r6u_A Choline-binding protein 26.2 3.1E+02 0.011 27.6 10.2 60 663-727 131-198 (284)
372 2vpn_A Periplasmic substrate b 26.0 50 0.0017 34.2 4.3 59 661-729 130-188 (316)
373 2x7x_A Sensor protein; transfe 25.8 1.3E+02 0.0046 30.7 7.7 80 151-233 6-88 (325)
374 3gv0_A Transcriptional regulat 25.7 85 0.0029 31.6 6.0 80 150-233 7-90 (288)
375 3cnb_A DNA-binding response re 25.5 2.7E+02 0.0093 23.6 8.8 58 166-231 19-79 (143)
376 1ccw_A Protein (glutamate muta 25.4 2.2E+02 0.0074 25.0 7.9 85 153-244 5-93 (137)
377 1oj7_A Hypothetical oxidoreduc 25.4 73 0.0025 34.4 5.6 83 142-228 43-128 (408)
378 4es6_A Uroporphyrinogen-III sy 25.4 54 0.0019 32.6 4.3 86 136-230 113-206 (254)
379 3kbq_A Protein TA0487; structu 25.3 1.3E+02 0.0044 27.9 6.4 61 153-216 5-70 (172)
380 2zay_A Response regulator rece 25.1 2.2E+02 0.0076 24.5 8.2 56 166-230 19-76 (147)
381 3ezx_A MMCP 1, monomethylamine 25.0 3.3E+02 0.011 26.0 9.7 88 152-245 93-186 (215)
382 2rgy_A Transcriptional regulat 24.9 76 0.0026 32.0 5.5 79 151-233 8-91 (290)
383 2qr3_A Two-component system re 24.8 2.1E+02 0.0071 24.3 7.8 57 166-231 14-77 (140)
384 3tsm_A IGPS, indole-3-glycerol 24.6 4.2E+02 0.014 26.5 10.6 87 140-234 82-171 (272)
385 2qxy_A Response regulator; reg 24.4 2.5E+02 0.0085 24.0 8.3 58 166-232 15-73 (142)
386 3umf_A Adenylate kinase; rossm 24.3 20 0.0007 34.9 0.8 35 79-113 26-60 (217)
387 3isp_A HTH-type transcriptiona 24.3 1.5E+02 0.005 29.8 7.6 45 504-552 128-172 (303)
388 3hdv_A Response regulator; PSI 24.3 2.4E+02 0.0083 23.8 8.1 58 166-232 18-78 (136)
389 2h3h_A Sugar ABC transporter, 24.3 1.1E+02 0.0036 31.3 6.5 79 153-233 3-83 (313)
390 2vd3_A ATP phosphoribosyltrans 24.3 1E+02 0.0035 31.2 5.9 100 663-775 106-208 (289)
391 3r7f_A Aspartate carbamoyltran 23.9 1.5E+02 0.0052 30.3 7.2 134 20-185 38-179 (304)
392 3cg4_A Response regulator rece 23.5 3.4E+02 0.012 23.0 13.8 56 166-230 18-75 (142)
393 2vk2_A YTFQ, ABC transporter p 23.4 87 0.003 31.8 5.6 79 152-233 3-84 (306)
394 3c3m_A Response regulator rece 23.3 3.4E+02 0.012 23.0 9.0 57 166-231 14-72 (138)
395 3miz_A Putative transcriptiona 23.3 2E+02 0.0068 28.9 8.4 86 143-233 5-93 (301)
396 2hsg_A Glucose-resistance amyl 23.1 1.1E+02 0.0036 31.6 6.3 79 151-233 60-140 (332)
397 2rjo_A Twin-arginine transloca 23.1 92 0.0031 32.1 5.8 79 152-233 6-89 (332)
398 2j48_A Two-component sensor ki 23.1 2.9E+02 0.0099 22.2 8.2 58 166-232 12-71 (119)
399 3kn3_A Putative periplasmic pr 22.7 48 0.0016 32.8 3.1 74 470-554 19-95 (242)
400 3hs3_A Ribose operon repressor 22.5 1.1E+02 0.0039 30.4 6.2 70 144-216 3-75 (277)
401 3c3k_A Alanine racemase; struc 22.5 1.8E+02 0.0061 29.0 7.7 78 151-233 8-87 (285)
402 1jlj_A Gephyrin; globular alph 22.2 1.9E+02 0.0064 27.2 7.1 67 149-217 12-87 (189)
403 3g85_A Transcriptional regulat 22.0 2.1E+02 0.0072 28.4 8.2 121 20-147 129-257 (289)
404 3kto_A Response regulator rece 21.7 2E+02 0.0069 24.5 7.0 58 166-232 17-78 (136)
405 3okf_A 3-dehydroquinate syntha 21.7 2.4E+02 0.008 30.1 8.5 95 145-244 56-158 (390)
406 3hv2_A Response regulator/HD d 21.7 2.5E+02 0.0084 24.5 7.8 58 166-232 25-84 (153)
407 3dmy_A Protein FDRA; predicted 21.4 8.1E+02 0.028 26.7 12.9 77 152-232 113-198 (480)
408 3f6p_A Transcriptional regulat 21.3 2.8E+02 0.0094 22.9 7.7 57 166-231 13-71 (120)
409 1nrz_A PTS system, sorbose-spe 21.3 2.1E+02 0.0071 26.3 6.9 85 138-234 14-98 (164)
410 4gd5_A Phosphate ABC transport 20.7 1.4E+02 0.0047 30.0 6.3 50 505-554 74-123 (279)
411 2b4l_A Glycine betaine-binding 20.7 1.1E+02 0.0038 30.7 5.5 40 473-523 181-220 (268)
412 1sg6_A Pentafunctional AROM po 20.4 3.8E+02 0.013 28.5 10.0 94 146-244 31-140 (393)
413 3eod_A Protein HNR; response r 20.3 2.9E+02 0.01 23.0 7.8 58 166-232 18-77 (130)
414 3rf7_A Iron-containing alcohol 20.3 1.8E+02 0.0063 30.8 7.3 82 142-227 41-130 (375)
415 1gud_A ALBP, D-allose-binding 20.3 1.2E+02 0.0042 30.3 5.9 81 152-233 2-85 (288)
416 2i6u_A Otcase, ornithine carba 20.2 6.9E+02 0.024 25.4 12.0 135 19-187 40-181 (307)
417 1vsq_C Mannose-specific phosph 20.2 1.8E+02 0.0062 26.7 6.3 85 138-234 17-101 (165)
418 1q9u_A Uncharacterized protein 20.1 4E+02 0.014 22.9 8.5 70 165-243 16-87 (130)
419 3nhm_A Response regulator; pro 20.0 3.3E+02 0.011 22.7 8.1 57 166-232 15-73 (133)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=9.6e-99 Score=934.16 Aligned_cols=772 Identities=19% Similarity=0.290 Sum_probs=642.7
Q ss_pred ccEEEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCC-CHHHHHHHHHHHHhcCCeEEEEccCChhH
Q 002352 17 IPVNVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKG-DVVAAAAAALDLLNNVLVQAILGPEKSMQ 95 (932)
Q Consensus 17 ~~i~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~-~~~~a~~~a~~li~~~~v~aiiGp~~s~~ 95 (932)
++|+||+++|++|. ....|+++|+|+||+++ ++|+++++|+++ ++..++.++++++++ +|.|||||.+|..
T Consensus 1 ~~ikIG~l~~~tg~---~~~~a~~lAveeiN~~~----~~l~~~~~D~~~~~~~~a~~~~~~l~~~-~V~aiiG~~~S~~ 72 (823)
T 3kg2_A 1 NSIQIGGLFPRGAD---QEYSAFRVGMVQFSTSE----FRLTPHIDNLEVANSFAVTNAFCSQFSR-GVYAIFGFYDKKS 72 (823)
T ss_dssp CEEEEEEEEETTCH---HHHHHHHHHHHHTCCSS----CEEEEEEEEECTTCHHHHHHHHHHHHHT-TCSEEEECCCTTT
T ss_pred CcceEEEEeCCCCh---HHHHHHHHHHHHHhcCC----eEEEEEEEEcCCCChHHHHHHHHHHHhc-CcEEEEcCCChhH
Confidence 36999999999996 77999999999999986 899999999999 999999999999987 9999999999999
Q ss_pred HHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHH
Q 002352 96 TNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDAL 175 (932)
Q Consensus 96 a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l 175 (932)
+.+++.+++.+++|+|+++. +.. ..++|+||+.|+ ++.++++++++|||++|++|| |++||.+..+.+.+++
T Consensus 73 ~~a~~~i~~~~~iP~is~~~--~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~ 144 (823)
T 3kg2_A 73 VNTITSFCGTLHVSFITPSF--PTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (823)
T ss_dssp HHHHHHHHHHTTCEEEECSC--CCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCceeeccc--CCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-eCChhHHHHHHHHHHh
Confidence 99999999999999999733 322 357999999998 899999999999999999999 8889999999999999
Q ss_pred HhCCceeeeeeecCCC--CChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecccchhcccC
Q 002352 176 QAIDTRVPYRSVISPL--ATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTNLLRTL 253 (932)
Q Consensus 176 ~~~g~~v~~~~~~~~~--~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~~~~~~~ 253 (932)
++.|++|++...++.. .++.|+..++++|+++++|+|++++..+.+..++++|++.||+.++|+||.++......+..
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 224 (823)
T 3kg2_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLL 224 (823)
T ss_dssp HHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSSSSCCS
T ss_pred hccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCeEEEEecccccccchH
Confidence 9999999998877654 23678999999999999999999999999999999999999999999999998543322221
Q ss_pred ChhhhhhccceEEEeecCCCChhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHHHHHhcccccccccccc
Q 002352 254 EPSVIDSMQGVIGVRPYVPKTKAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEKAGITSFGFDKTNV 333 (932)
Q Consensus 254 ~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~Al~~~~~~~~~~~~~~~ 333 (932)
...+...|++++.++.++.+.+++|.++|+++|+++++......++.+++++||||+++|+|+++++..........
T Consensus 225 --~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~~~- 301 (823)
T 3kg2_A 225 --KIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRG- 301 (823)
T ss_dssp --SSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSS-
T ss_pred --HhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHHHHHHhhccccccCC-
Confidence 22344567999999999999999999999999998777655556888999999999999999999987543322211
Q ss_pred CCCCCccccc--cccCChHHHHHHhhcceeeeeeeeEEee-CCccccccEEEEEee-cCeEEEEEEcCCCCccccccCCC
Q 002352 334 SSNATDLEAF--GISRNGPKLLQALSSTRFKGLTGDYVFV-DGQLQSSAFEIINVN-NGARGVGFWTPEKGLTLKLRSNS 409 (932)
Q Consensus 334 ~~~~~~~~~~--~~~~~g~~l~~~L~~~~f~G~tG~~~f~-~g~~~~~~~~I~n~~-~g~~~vG~w~~~~g~~~~~~~~~ 409 (932)
...+|... ..|.+|.+|.++|++++|+|++|++.|+ +|++....|+|+|++ +|++.||.|++..|+.....
T Consensus 302 --~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~w~~~~g~~~~~~--- 376 (823)
T 3kg2_A 302 --NAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVLTED--- 376 (823)
T ss_dssp --CCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEEEEEEETTTEEEECCC---
T ss_pred --CCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCeeEEEEcCCCCceeccC---
Confidence 11233332 4678999999999999999999999997 899988999999999 88999999999887753211
Q ss_pred ccCCCccceEeCCCCCCCCCCCCcCCCCCcEEEEeecccCcccceEEEe--cCCCCCCceEEEEeHHHHHHHHHHCCCcc
Q 002352 410 TTKSKLRPIIWPGDSTSDPKGWEIPTNKRKLRIGVPVTKGFSDFVKVTI--DPNTRESASVTGYSIAVFKAVIEELPYAV 487 (932)
Q Consensus 410 ~~~~~~~~i~Wpg~~~~~P~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~G~~~dl~~~la~~l~f~~ 487 (932)
+. ....+++|+|++...+|| ++... ++.++ ++++.|||+||+++++++|||++
T Consensus 377 -------------------~~--~~~~~~~l~v~~~~~~P~---~~~~~~~~~~~~-~~~~~G~~~dl~~~~a~~l~~~~ 431 (823)
T 3kg2_A 377 -------------------DT--SGLEQKTVVVTTILESPY---VMMKANHAALAG-NERYEGYCVDLAAEIAKHCGFKY 431 (823)
T ss_dssp -------------------CC--SSCCCCCEEEEECCCTTT---SEECTTGGGCCG-GGGEESHHHHHHHHHHHHHTCCE
T ss_pred -------------------cc--cccCCCEEEEEEecCCCc---EEEecCccccCC-CCceEEEHHHHHHHHHHHcCCcE
Confidence 11 124588999999766665 44421 22334 78999999999999999999876
Q ss_pred cEEEEeccCCCC---CCCCCHHHHHHHHHcCcccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEec
Q 002352 488 AYDFVPYAQPDG---TSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQ 564 (932)
Q Consensus 488 ~~~~~~~~~~~g---~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~ 564 (932)
+++.++.+ .+| ..||+|++++++|.+|++|++++++++|++|.+.+|||.||+.+++++++|++....+++|.|++
T Consensus 432 ~~~~~~~~-~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~~~~~~~~~~~~fl~ 510 (823)
T 3kg2_A 432 KLTIVGDG-KYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLD 510 (823)
T ss_dssp EEEECSSC-CCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEEEECCCCCCCCGGGTTT
T ss_pred EEEEccCC-cccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEEEEEECCCcccccchHhhc
Confidence 55554421 223 25789999999999999999999999999999999999999999999999998777778999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhcccCCCCCCcc--------------cccccchhhhHHHHhhhcCcc-cccccchh
Q 002352 565 PLTLDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGPA--------------QHQVGTSFWFSFSTMVFSHRE-RVISNLAR 629 (932)
Q Consensus 565 PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~-~~~s~~~R 629 (932)
||++.+|++++++++++++++|+++|+.+.+|+.+. ..++.+++|++++++++++.. .|++.+.|
T Consensus 511 Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~p~~~~~R 590 (823)
T 3kg2_A 511 PLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGR 590 (823)
T ss_dssp TSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTTSCC------CCCHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHHHHHHHHhcCCCcCCcchhhh
Confidence 999999999999999999999999998755443221 234678999999999988854 57999999
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCC-cEEEEcChhHHHHHHhcCCCc-c----------c
Q 002352 630 FVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGD-NVGYRKDSFVFGILKQLGFDE-K----------K 697 (932)
Q Consensus 630 ~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~-~vg~~~~s~~~~~l~~~~~~~-~----------~ 697 (932)
+++++|||++|||+++|||+|+|+||++++.++|+|++||.+++. ++|+..++....++++..... . .
T Consensus 591 ~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (823)
T 3kg2_A 591 IVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEP 670 (823)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHCCCHHHHHHHHHHHHCSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHHhccchHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999998654 788887777788887643321 0 0
Q ss_pred ccccCCHHHHHHHhhc-ccCCCceeEEEecccccccccccC-CcceEEecccccccceEEEecCCCCChHHHHHHHHhhh
Q 002352 698 LIAYSSPEECDELFQK-GSAGGGIAAAFDEIPYTKPFIGQY-CSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVT 775 (932)
Q Consensus 698 ~~~~~~~~~~~~~l~~-g~~~~g~~a~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~k~s~l~~~in~~il~l~ 775 (932)
...+++.+++++.+.+ +. .+|++.+.+.++|+.++. |+ ++++++.+...++++++||||||++.||++|++++
T Consensus 671 ~~~~~~~~~~~~~~~~~~~----~~A~~~~~~~~~y~~~~~~c~-l~~v~~~~~~~~~~~~~~k~spl~~~~~~~il~l~ 745 (823)
T 3kg2_A 671 SVFVRTTAEGVARVRKSKG----KYAYLLESTMNEYIEQRKPCD-TMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLS 745 (823)
T ss_dssp CCCBSSHHHHHHHHHTTTT----SEEEEEEHHHHHHHHTSTTCC-EEEESCCSSCEEECCEEETTCSSHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHhccCC----ceEEEechHHHHHHHhcCCCc-eEEccccccccceeEeecCCChHHHHHHHHHHHHH
Confidence 1134588999999973 33 689999999999888877 87 89999999999999999999999999999999999
Q ss_pred ccchHHHHHHHhccCCCCCCCCCC--CCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 002352 776 EGNKMKEIEDEWFKKRASCPDASN--AGSSHSLGLNSFRGLFLIAGTAATSALIIFLAVFVCEHRNVLKR 843 (932)
Q Consensus 776 e~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~l~~~~g~f~il~~g~~ls~~vf~~E~~~~~~~~~~~ 843 (932)
|+|++++|.++|+.+.+.|..... .....+|+++++.|+|++|++|+++|+++|++|++|++|+++++
T Consensus 746 e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~~~~~~~~~~~ 815 (823)
T 3kg2_A 746 EQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAKR 815 (823)
T ss_dssp HTTHHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred hCCcHHHHHHhhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 999999999999988889987642 24567999999999999999999999999999999998877644
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=2.7e-49 Score=444.61 Aligned_cols=371 Identities=16% Similarity=0.213 Sum_probs=318.6
Q ss_pred CCccEEEEEEEeCCCccchhHHHHHHHHHHHHhcCCCC--CCcEEEEEEecCCC-CHHHHHHHHHHHHhcCCeEEEEccC
Q 002352 15 TTIPVNVGLVLDMNGEDGKIALSCINMSLSDFYNSNSH--YKTRLLLNTRNSKG-DVVAAAAAALDLLNNVLVQAILGPE 91 (932)
Q Consensus 15 ~~~~i~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~--~g~~l~~~~~D~~~-~~~~a~~~a~~li~~~~v~aiiGp~ 91 (932)
.+++|+||+++|++|. ..+.|+++|+++||+++++ .|++|+++++|++| |+..|+.++++|+++ +|.|||||.
T Consensus 2 ~~~~i~IG~i~~~sg~---~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~-~V~aiiG~~ 77 (389)
T 3o21_A 2 FPNTISIGGLFMRNTV---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSR-GVYAIFGFY 77 (389)
T ss_dssp CCSEEEEEEEECTTCH---HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTT-TCSCEEECC
T ss_pred CCceeEEEEEeCCCCH---HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEeCC
Confidence 3678999999999996 7899999999999999988 38999999999988 999999999999988 999999999
Q ss_pred ChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHH
Q 002352 92 KSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSL 171 (932)
Q Consensus 92 ~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l 171 (932)
+|..+.+++++++.++||+|++++ +.++ ..+|.||+.|+ |+.+++++++++||++|++|| |++||....+.|
T Consensus 78 ~S~~~~a~~~i~~~~~iP~Is~s~--~~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~ 149 (389)
T 3o21_A 78 DQMSMNTLTSFCGALHTSFVTPSF--PTDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERGFSVLQAI 149 (389)
T ss_dssp CTTTHHHHHHHHHHHTCCEEECSC--CCSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTCSHHHHHH
T ss_pred ChhHHHHHHHHhccCCCceeecCC--CCcc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-cCcHHHHHHHHH
Confidence 999999999999999999998754 3333 35667777776 899999999999999999999 889999999999
Q ss_pred HHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecccchhcc
Q 002352 172 TDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTNLLR 251 (932)
Q Consensus 172 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~~~~~ 251 (932)
.+.+++.|++|+....++. ..+.|+..+|++|+++++|+||+++..+.+..++++|+++||+.++|+||+++.+....+
T Consensus 150 ~~~~~~~g~~v~~~~~~~~-~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~~ 228 (389)
T 3o21_A 150 MEAAVQNNWQVTARSVGNI-KDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDIL 228 (389)
T ss_dssp HHHHHHTTCEEEEEECTTC-CCTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEEEECCTTGGGCC
T ss_pred HHHhhcCCCeEEEEEecCC-CCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEccCCccccc
Confidence 9999999999998876643 244589999999999999999999999999999999999999999999999886654433
Q ss_pred cCChhhhhhccceEEEeecCCCChhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHHHHHhcccccccccc
Q 002352 252 TLEPSVIDSMQGVIGVRPYVPKTKAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEKAGITSFGFDKT 331 (932)
Q Consensus 252 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~Al~~~~~~~~~~~~~ 331 (932)
. ........|++++..+.+++|.+++|+++|+++|++++|+.+...++.+++++|||++++|+|+++++.........
T Consensus 229 ~--~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~ 306 (389)
T 3o21_A 229 L--ERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDVSRR 306 (389)
T ss_dssp C--HHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC--
T ss_pred H--HHHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhCcccccC
Confidence 2 23445677899999999999999999999999998766543333568899999999999999999997543222111
Q ss_pred ccCCCCCcc--ccccccCChHHHHHHhhcceeeeeeeeEEee-CCccccccEEEEEee-cCeEEEEEEcCCCCccc
Q 002352 332 NVSSNATDL--EAFGISRNGPKLLQALSSTRFKGLTGDYVFV-DGQLQSSAFEIINVN-NGARGVGFWTPEKGLTL 403 (932)
Q Consensus 332 ~~~~~~~~~--~~~~~~~~g~~l~~~L~~~~f~G~tG~~~f~-~g~~~~~~~~I~n~~-~g~~~vG~w~~~~g~~~ 403 (932)
+...+| +...+|.+|.+|+++|++++|+|++|++.|| +|++....|+|+|+. +|+++||+|++..|++.
T Consensus 307 ---~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~~~ 379 (389)
T 3o21_A 307 ---GSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYERFVP 379 (389)
T ss_dssp ------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTEEEC
T ss_pred ---CCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCceeeeEEcCCCCccc
Confidence 111233 3346789999999999999999999999997 999888899999999 88999999999999875
No 3
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=6.2e-48 Score=441.56 Aligned_cols=386 Identities=19% Similarity=0.234 Sum_probs=324.6
Q ss_pred CCCCccEEEEEEEeCCCc-----cchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhc-CCeEE
Q 002352 13 KNTTIPVNVGLVLDMNGE-----DGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNN-VLVQA 86 (932)
Q Consensus 13 ~~~~~~i~IG~i~~~s~~-----~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~~v~a 86 (932)
+.+.++|+||+++|++|. .|.....|+++|++++|+++.+.|++|+++++|+++++..|+.++++|+.+ ++|.+
T Consensus 9 ~~~~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~a 88 (433)
T 4f11_A 9 PPSSPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNESLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLM 88 (433)
T ss_dssp --CCCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHTTTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCSE
T ss_pred cCCCCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCCceEE
Confidence 345678999999999993 477899999999999999944448999999999999999999999999987 49999
Q ss_pred EEccCChhHHHHHHHhcCCCCccEEecccCCCCccC-CCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCC
Q 002352 87 ILGPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTS-IRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGE 165 (932)
Q Consensus 87 iiGp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~-~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~ 165 (932)
||||.+|..+.+++++++.+++|+|+++++++.+++ ..+||+||+.|++..++.+++++++++||++|++||+|++||.
T Consensus 89 viG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~ 168 (433)
T 4f11_A 89 VFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFS 168 (433)
T ss_dssp EEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHH
T ss_pred EECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecchhhH
Confidence 999999999999999999999999999999999987 4689999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecc
Q 002352 166 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEG 245 (932)
Q Consensus 166 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~ 245 (932)
...+.|.+.+++.|++|+....++ .|+..++.+|+++++|+|++++.+.++..++++|++.|++.++|+||.+++
T Consensus 169 ~~~~~~~~~~~~~g~~v~~~~~~~-----~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~ 243 (433)
T 4f11_A 169 EVRNDLTGVLYGEDIEISDTESFS-----NDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGW 243 (433)
T ss_dssp HHHHHHHHHSSSSSCEEEEEEEES-----SCCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEEEEESC
T ss_pred HHHHHHHHHHHHcCceEEEEeccC-----cCHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEEEEcCc
Confidence 999999999999999999988775 257889999999999999999999999999999999999988899999998
Q ss_pred cchhcc-----------cCChhhhhhccceEEEeecCCCC--------hhHHHHHHHHHHh-hhccCCCCCccccchhhH
Q 002352 246 MTNLLR-----------TLEPSVIDSMQGVIGVRPYVPKT--------KAFENFRVRWKRK-FLQENPSLFDVELNILGL 305 (932)
Q Consensus 246 ~~~~~~-----------~~~~~~~~~~~g~l~~~~~~~~~--------~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~a~ 305 (932)
....+. .......+.++|++++.++.+.. +..++|.++|+++ ++. +++.+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~~~--------~~~~~a~ 315 (433)
T 4f11_A 244 YEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSGV--------GPSKFHG 315 (433)
T ss_dssp SCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHTTS--------CCCTTHH
T ss_pred chHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcCCC--------Ccccchh
Confidence 432221 12234567899999999876532 3478899999987 554 6788999
Q ss_pred HHHHHHHHHHHHHHHhccccccccccccCCCCCccccccccCChHHHHHHhhcceeeeeeeeEEeeCCccccccEEEEEe
Q 002352 306 FAYDATRALAVAVEKAGITSFGFDKTNVSSNATDLEAFGISRNGPKLLQALSSTRFKGLTGDYVFVDGQLQSSAFEIINV 385 (932)
Q Consensus 306 ~~YDav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~~f~~g~~~~~~~~I~n~ 385 (932)
++||||+++|+|+++++...... ..+...+......|.++.+|.++|++++|+|++|++.|++|++. ..|.|+++
T Consensus 316 ~~YDAv~~la~Al~~a~~~~~~~----~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f~~Gd~~-~~~~I~~~ 390 (433)
T 4f11_A 316 YAYDGIWVIAKTLQRAMETLHAS----SRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVFRNGERM-GTIKFTQF 390 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS----SSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEEETTEEE-CEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHhcc----CCCCcccccccccHHHHHHHHHHHHhcEEEccceEEEEecCcee-eeEEEEEE
Confidence 99999999999999987542100 00110010112235568999999999999999999999999976 89999999
Q ss_pred e-cCeEEEEEEcCCCCccccccCCCccCCCccceEeCCCCC
Q 002352 386 N-NGARGVGFWTPEKGLTLKLRSNSTTKSKLRPIIWPGDST 425 (932)
Q Consensus 386 ~-~g~~~vG~w~~~~g~~~~~~~~~~~~~~~~~i~Wpg~~~ 425 (932)
+ ++++.||.|++...- +. ...+.|.|||+.+
T Consensus 391 ~~g~~~~VG~~~~~~~~---l~------~~~~~i~W~~~~~ 422 (433)
T 4f11_A 391 QDSREVKVGEYNAVADT---LE------IINDTIRFQGSEP 422 (433)
T ss_dssp ETTEEEEEEEEETTTTE---EE------ECTTTCCCSSSSC
T ss_pred ECCceEEEEEEECCCCe---EE------EeCCceECCCCCC
Confidence 9 669999999875321 11 1346799999874
No 4
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=7.4e-48 Score=431.54 Aligned_cols=366 Identities=18% Similarity=0.244 Sum_probs=295.9
Q ss_pred ccEEEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCC-CCHHHHHHHHHHHHhcCCeEEEEccCChhH
Q 002352 17 IPVNVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSK-GDVVAAAAAALDLLNNVLVQAILGPEKSMQ 95 (932)
Q Consensus 17 ~~i~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~-~~~~~a~~~a~~li~~~~v~aiiGp~~s~~ 95 (932)
++|+||+++|++|. ..+.|+++|+++||++ |++|+++++|++ +|+..+++++++|+++ +|.+||||.+|..
T Consensus 1 ~~i~IG~i~~~sg~---~~~~~~~lAv~~iN~~----g~~l~~~~~d~~~~d~~~a~~~~~~li~~-~V~aiiG~~~S~~ 72 (376)
T 3hsy_A 1 NSIQIGGLFPRGAD---QEYSAFRVGMVQFSTS----EFRLTPHIDNLEVANSFAVTNAFCSQFSR-GVYAIFGFYDKKS 72 (376)
T ss_dssp CEEEEEEEEETTCH---HHHHHHHHHHHHTCCS----SCEEEEEEEEECTTCHHHHHHHHHHHHHT-TCSEEEECCCTTT
T ss_pred CceeEEEEeCCCCH---HHHHHHHHHHHHHhcC----CeEEEEEEeecCCCChHHHHHHHHHHHhc-CcEEEECCCchhH
Confidence 36999999999984 5689999999999998 689999999965 4999999999999987 9999999999999
Q ss_pred HHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHH
Q 002352 96 TNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDAL 175 (932)
Q Consensus 96 a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l 175 (932)
+.+++++++.+++|+|+++++ . ....+|+||+.|+ |+.+++++++++||++|++|| |++||.+..+.|.+.+
T Consensus 73 ~~av~~~~~~~~ip~is~~~~--~--~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~ 144 (376)
T 3hsy_A 73 VNTITSFCGTLHVSFITPSFP--T--DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (376)
T ss_dssp HHHHHHHHHHHTCEEEECSCC--C--CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHH
T ss_pred HHHHHHHhccCcCceeecCCC--C--cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-eCchhHHHHHHHHHHh
Confidence 999999999999999998763 2 2347899999886 899999999999999999999 8999999999999999
Q ss_pred HhCCceeeeeeecCCC--CChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecccchhcccC
Q 002352 176 QAIDTRVPYRSVISPL--ATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTNLLRTL 253 (932)
Q Consensus 176 ~~~g~~v~~~~~~~~~--~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~~~~~~~ 253 (932)
++.|++|+....++.. .++.|+..+|.+|+++++|+||+++....+..++++++++||+.++|+||+++......+..
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~~ 224 (376)
T 3hsy_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLL 224 (376)
T ss_dssp HHHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTTSTTGG
T ss_pred hhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccCCCCcEEEEcCCCccccchH
Confidence 9999999987766543 24678999999999999999999999999999999999999999999999997432221111
Q ss_pred ChhhhhhccceEEEeecCCCChhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHHHHHhcccccccccccc
Q 002352 254 EPSVIDSMQGVIGVRPYVPKTKAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEKAGITSFGFDKTNV 333 (932)
Q Consensus 254 ~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~Al~~~~~~~~~~~~~~~ 333 (932)
+......+++++.++.+++|.+++|.++|+++|++++++.+...++.+++++|||++++|+|++++++......+.
T Consensus 225 --~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~~-- 300 (376)
T 3hsy_A 225 --KIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRR-- 300 (376)
T ss_dssp --GSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSCC--
T ss_pred --HhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhcCCccccC--
Confidence 1122234588888888889999999999999998876654334588999999999999999999998643222211
Q ss_pred CCCCCcc--ccccccCChHHHHHHhhcceeeeeeeeEEee-CCccccccEEEEEee-cCeEEEEEEcCCCCccc
Q 002352 334 SSNATDL--EAFGISRNGPKLLQALSSTRFKGLTGDYVFV-DGQLQSSAFEIINVN-NGARGVGFWTPEKGLTL 403 (932)
Q Consensus 334 ~~~~~~~--~~~~~~~~g~~l~~~L~~~~f~G~tG~~~f~-~g~~~~~~~~I~n~~-~g~~~vG~w~~~~g~~~ 403 (932)
....+| +...+|.+|.+|+++|++++|+|++|++.|| +|++....|+|+|+. +|+++||+|++..|++.
T Consensus 301 -~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~~~ 373 (376)
T 3hsy_A 301 -GNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVV 373 (376)
T ss_dssp -CCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred -CCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCceEEEEEcCCCCcee
Confidence 111234 4456788999999999999999999999997 999988999999999 88999999999998864
No 5
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=1.6e-46 Score=423.98 Aligned_cols=372 Identities=15% Similarity=0.219 Sum_probs=307.1
Q ss_pred ccEEEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCC-CcEEEEEEecCCCCH-HHHHHHHHHHHhcCCeEEEEccCChh
Q 002352 17 IPVNVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHY-KTRLLLNTRNSKGDV-VAAAAAALDLLNNVLVQAILGPEKSM 94 (932)
Q Consensus 17 ~~i~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~-g~~l~~~~~D~~~~~-~~a~~~a~~li~~~~v~aiiGp~~s~ 94 (932)
.+||||+++|+++..|+..+.|+++|+++||++++++ |++|+++++|+++++ ..+..++|+++. ++|.+||||.+|.
T Consensus 3 ~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~-~~V~aiiG~~~S~ 81 (393)
T 3om0_A 3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILP-KGVVSVLGPSSSP 81 (393)
T ss_dssp CEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGG-GCCSCEECCSSCH
T ss_pred cceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHHh-cCcEEEECCCCch
Confidence 4799999999999999999999999999999999987 689999999999975 456678888885 5999999999995
Q ss_pred -HHHHHHHhcCCCCccEEecccCCCCccCCCCCce--EecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHH
Q 002352 95 -QTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYF--FRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSL 171 (932)
Q Consensus 95 -~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~--~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l 171 (932)
++.+++++++.+++|+|++++++ .....+|++ ||+.|++..|+.+++++++++||++|++||+|++||..+.+.+
T Consensus 82 ~~~~a~~~i~~~~~ip~is~~a~~--~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g~~l~~~~ 159 (393)
T 3om0_A 82 ASASTVSHICGEKEIPHIKVGPEE--TPRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELV 159 (393)
T ss_dssp HHHHHHHHHHHHHTCCEEECSCCC--CC----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHHHHTHHHH
T ss_pred hHHHHHHHHHhccCCCeEeccCCc--CccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHH
Confidence 45799999999999999998764 122458888 9999999999999999999999999999999999998765544
Q ss_pred HHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecccchhcc
Q 002352 172 TDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTNLLR 251 (932)
Q Consensus 172 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~~~~~ 251 (932)
+.+.+.|++|.... ++ .+.|+..++.+|+++++|+|++++.+.++..++++|+++||+.++|+||++++.....+
T Consensus 160 -~~~~~~g~~v~~~~-~~---~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~ 234 (393)
T 3om0_A 160 -RGFLISKETLSVRM-LD---DSRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPILH 234 (393)
T ss_dssp -HHHHHSSSCEEEEE-CC----CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECCTTGGGCC
T ss_pred -HhhhccCCeEEEEe-cC---CCCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEecccccccc
Confidence 55777899987654 32 34579999999999999999999999999999999999999999999999987654433
Q ss_pred cCChhhhhhccceEEEeecCCCChhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHHHHHhcccccccccc
Q 002352 252 TLEPSVIDSMQGVIGVRPYVPKTKAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEKAGITSFGFDKT 331 (932)
Q Consensus 252 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~Al~~~~~~~~~~~~~ 331 (932)
... ......|++++..+.++.+.+++|.++|+++|+......+...++.+++++|||++++|+|++++++.. ..
T Consensus 235 l~~--~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~~~~~~-~~--- 308 (393)
T 3om0_A 235 LDG--IVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQ-EI--- 308 (393)
T ss_dssp CTT--TCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHHHTTTS-CC---
T ss_pred hhh--hhccCCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHHHHHHHHHhhcc-cC---
Confidence 211 234567899999888889999999999999998422111112578899999999999999999997532 11
Q ss_pred ccCCCCCccccccccCChHHHHHHhhcceeeeeeeeEEee-CCccccccEEEEEee-cCeEEEEEEcCCCCcccc
Q 002352 332 NVSSNATDLEAFGISRNGPKLLQALSSTRFKGLTGDYVFV-DGQLQSSAFEIINVN-NGARGVGFWTPEKGLTLK 404 (932)
Q Consensus 332 ~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~~f~-~g~~~~~~~~I~n~~-~g~~~vG~w~~~~g~~~~ 404 (932)
.....+|...+.|.+|.+|.++|++++|+|++|++.|+ +|++....|+|+|++ +|++.||+|++..|+...
T Consensus 309 --~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~gl~~~ 381 (393)
T 3om0_A 309 --GVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIGVWYSNRTLAMN 381 (393)
T ss_dssp --CCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEEEEEEEEECC------
T ss_pred --cCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCceEeeeEcCCCCcccc
Confidence 12234566677899999999999999999999999997 999888999999999 889999999999888643
No 6
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=3.1e-46 Score=419.81 Aligned_cols=366 Identities=16% Similarity=0.219 Sum_probs=311.1
Q ss_pred CCCccEEEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCC-CHHHHHHHHHHHHhcCCeEEEEccCC
Q 002352 14 NTTIPVNVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKG-DVVAAAAAALDLLNNVLVQAILGPEK 92 (932)
Q Consensus 14 ~~~~~i~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~-~~~~a~~~a~~li~~~~v~aiiGp~~ 92 (932)
.++++||||+++|++|. ....|+++|++++|+++ +|+++++|+++ |+..++.++++|+.+ +|.+||||.+
T Consensus 6 ~~~~~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g-----~l~~~~~D~~~~d~~~a~~~~~~l~~~-~V~aiiG~~~ 76 (384)
T 3saj_A 6 AMPNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPP-----KLLPQIDIVNISDSFEMTYRFCSQFSK-GVYAIFGFYE 76 (384)
T ss_dssp CCCSEEEEEEEESCSSS---HHHHHHHHHHTTCCSSS-----EEEEEEEECCTTCHHHHHHHHHHHHHT-TCSCEEECCC
T ss_pred CCCcceeEEEEecCCCH---HHHHHHHHHHHHHhcCC-----ccceeeEecccCchhhHHHHHHHHHhc-CeEEEECCCC
Confidence 45788999999999997 67999999999999985 89999999887 999999999999987 9999999999
Q ss_pred hhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHH
Q 002352 93 SMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLT 172 (932)
Q Consensus 93 s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~ 172 (932)
|..+.+++++++.+++|+|+++ ++.++ ..+|+||+.|+ ++.+++++++++||++|++|| |++||....+.|.
T Consensus 77 S~~~~a~~~~~~~~~iP~is~~--~~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~ 148 (384)
T 3saj_A 77 RRTVNMLTSFCGALHVCFITPS--FPVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-DADRGLSVLQRVL 148 (384)
T ss_dssp HHHHHHHHHHHHHHTCCEEECS--CCCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCeEecc--ccCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-eCchhHHHHHHHH
Confidence 9999999999999999999984 34443 46778888887 899999999999999999999 7799999999999
Q ss_pred HHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecccchhccc
Q 002352 173 DALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTNLLRT 252 (932)
Q Consensus 173 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~~~~~~ 252 (932)
+.+++.|++|+....++ .++.|+..++.+|+++++|+|++++.+.++..++++|+++||+.++|+||+++.+....+.
T Consensus 149 ~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~ 226 (384)
T 3saj_A 149 DTAAEKNWQVTAVNILT--TTEEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMDIDL 226 (384)
T ss_dssp HHHHHHTCEEEEEEGGG--CCHHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEEESSSCGGGSCH
T ss_pred HHhhhcCceEEEEEecc--CCchhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEECCCcccccH
Confidence 99999999999877543 4677899999999999999999999999999999999999999999999999854332221
Q ss_pred CChhhhhhccceEEEeecCCCChhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHHHHHhccccccccccc
Q 002352 253 LEPSVIDSMQGVIGVRPYVPKTKAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEKAGITSFGFDKTN 332 (932)
Q Consensus 253 ~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~Al~~~~~~~~~~~~~~ 332 (932)
........|++++.++.++++.+++|.++|+++|++++|......++.+++++|||++++++|++++++.........
T Consensus 227 --~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~Al~~~~~~~~~~~~~~ 304 (384)
T 3saj_A 227 --NKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRIDISRRG 304 (384)
T ss_dssp --HHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred --HHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhccceecCC
Confidence 123445677999999999999999999999999988766444335688999999999999999999986432222111
Q ss_pred cCCCCCccccc--cccCChHHHHHHhhcceeeeeeeeEEee-CCccccccEEEEEee-cCeEEEEEEcCCCCccc
Q 002352 333 VSSNATDLEAF--GISRNGPKLLQALSSTRFKGLTGDYVFV-DGQLQSSAFEIINVN-NGARGVGFWTPEKGLTL 403 (932)
Q Consensus 333 ~~~~~~~~~~~--~~~~~g~~l~~~L~~~~f~G~tG~~~f~-~g~~~~~~~~I~n~~-~g~~~vG~w~~~~g~~~ 403 (932)
...+|... ..|.+|.+|+++|++++|+|++|++.|+ +|++....|+|++++ +|+++||+|++..|+..
T Consensus 305 ---~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~W~~~~gl~~ 376 (384)
T 3saj_A 305 ---NAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDKFVP 376 (384)
T ss_dssp ---SCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred ---CCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCcceeEEEcCCCCccc
Confidence 11234432 4578999999999999999999999997 999988999999999 88999999999888753
No 7
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=4.6e-46 Score=420.58 Aligned_cols=371 Identities=19% Similarity=0.259 Sum_probs=316.5
Q ss_pred CccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCC-CcEEEEEEecCC-CCHHHHHHHHHHHHhcCCeEEEEccCC
Q 002352 16 TIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHY-KTRLLLNTRNSK-GDVVAAAAAALDLLNNVLVQAILGPEK 92 (932)
Q Consensus 16 ~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~-g~~l~~~~~D~~-~~~~~a~~~a~~li~~~~v~aiiGp~~ 92 (932)
+++|+||+++|++| ..|.....|+++|+++||++++++ +++|++++.|.. .|+..+...+++|+++ +|.+||||.+
T Consensus 2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~~-~V~aiiG~~~ 80 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSL-GVAAIFGPSH 80 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHHH-CCSCEECCSS
T ss_pred CcceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhhc-CcEEEECCCC
Confidence 57899999999988 568889999999999999999998 469999998877 5888999999999975 9999999999
Q ss_pred hhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHH
Q 002352 93 SMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLT 172 (932)
Q Consensus 93 s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~ 172 (932)
|..+.+++++++.+++|+|+++++++.+++ ..+|+||+.|++..++.+++++++++||++|++|| |++||....+.+.
T Consensus 81 S~~~~a~~~~~~~~~ip~is~~~~~~~l~~-~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~ 158 (395)
T 3h6g_A 81 SSSANAVQSICNALGVPHIQTRWKHQVSDN-KDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTGLIRLQELI 158 (395)
T ss_dssp HHHHHHHHHHHHHTTCCEEECSCCCCCTTC-CCCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHHHHHTHHHH
T ss_pred hhHHHHHHHHHhcCCCCeEeeccCcccccc-cCceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-EChhHHHHHHHHH
Confidence 999999999999999999999999988875 37899999999999999999999999999999998 7789999999999
Q ss_pred HHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecccchhccc
Q 002352 173 DALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTNLLRT 252 (932)
Q Consensus 173 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~~~~~~ 252 (932)
+.+++.|++|+... ++. .+.|+..++.+|+++++|+|++++.+.++..++++++++||+.++|+||++.......+.
T Consensus 159 ~~~~~~g~~v~~~~-~~~--~~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~~~~~~~~~ 235 (395)
T 3h6g_A 159 KAPSRYNLRLKIRQ-LPA--DTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDV 235 (395)
T ss_dssp TGGGTSSCEEEEEE-CCS--SGGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCTTGGGBCC
T ss_pred HhhhcCCceEEEEE-eCC--CchhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCCceEEEEecCceeEech
Confidence 99999999998865 653 467899999999999999999999999999999999999999999999998654332222
Q ss_pred CChhhhhhccceEEEeecCCCChhHHHHHHHHHHhhhccCCCCCc----cccchhhHHHHHHHHHHHHHHHHhccccccc
Q 002352 253 LEPSVIDSMQGVIGVRPYVPKTKAFENFRVRWKRKFLQENPSLFD----VELNILGLFAYDATRALAVAVEKAGITSFGF 328 (932)
Q Consensus 253 ~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~----~~~~~~a~~~YDav~~la~Al~~~~~~~~~~ 328 (932)
... .....++.++..+.++++..++|.++|++++....|.... ..++.+++++|||++++++|++++++..
T Consensus 236 ~~~--~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a~~~~--- 310 (395)
T 3h6g_A 236 EPY--RYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMT--- 310 (395)
T ss_dssp TTT--TTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCTTCC---
T ss_pred HHh--ccCccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHHHHHhhhcCC---
Confidence 111 1112236788888888999999999999877543332111 1357899999999999999999987542
Q ss_pred cccccCCCCCccccccccCChHHHHHHhhcceeeeeeeeEEee--CCccccccEEEEEee-cCeEEEEEEcCCCCccc
Q 002352 329 DKTNVSSNATDLEAFGISRNGPKLLQALSSTRFKGLTGDYVFV--DGQLQSSAFEIINVN-NGARGVGFWTPEKGLTL 403 (932)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~~f~--~g~~~~~~~~I~n~~-~g~~~vG~w~~~~g~~~ 403 (932)
....+|...+.|.++.+|.++|++++|+|++|++.|+ +|++....|.|++++ +|++.||+|++..|+..
T Consensus 311 ------~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~~ 382 (395)
T 3h6g_A 311 ------VSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNM 382 (395)
T ss_dssp ------CCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEEEEEEEEETTTEECC
T ss_pred ------CcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCceEEEEEcCCCCccc
Confidence 1224566667899999999999999999999999995 899988899999999 88999999999988864
No 8
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=2.1e-45 Score=414.61 Aligned_cols=371 Identities=16% Similarity=0.191 Sum_probs=310.5
Q ss_pred CCccEEEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEe--cC-CCCHHHHHHHHHHHHhcCCeEEEEccC
Q 002352 15 TTIPVNVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTR--NS-KGDVVAAAAAALDLLNNVLVQAILGPE 91 (932)
Q Consensus 15 ~~~~i~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~--D~-~~~~~~a~~~a~~li~~~~v~aiiGp~ 91 (932)
-+++|+||+++|.++ .....|+++|+++||++++++|.++++... |+ .+++..+++.+|+++++ +|.|||||.
T Consensus 2 ~P~~I~IG~lf~~~~---~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~V~aiiG~~ 77 (389)
T 4gpa_A 2 FPSSVQIGGLFIRNT---DQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSR-GVFAIFGLY 77 (389)
T ss_dssp CCSEEEEEEEECTTC---HHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHHHT-TCSEEEECC
T ss_pred CCCeEEEEEEEcCCC---hHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHHhc-CCEEEEeCC
Confidence 467899999999886 456889999999999999998766555544 33 45888999999999986 999999999
Q ss_pred ChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHH
Q 002352 92 KSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSL 171 (932)
Q Consensus 92 ~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l 171 (932)
+|..+.+++.+++.++||+++++++.+.. .+|++++| |. +.+++++++++|+|++|++||+++.++. ..+.+
T Consensus 78 ~S~~~~~v~~i~~~~~ip~is~~~~~~~~--~~~~~~~~--~~---~~~a~~~l~~~~~w~~vaii~~~d~~~~-~~~~~ 149 (389)
T 4gpa_A 78 DKRSVHTLTSFCSALHISLITPSFPTEGE--SQFVLQLR--PS---LRGALLSLLDHYEWNCFVFLYDTDRGYS-ILQAI 149 (389)
T ss_dssp CTTTHHHHHHHHHHTTCEEEECSCCCSSC--CSSEEECS--CC---CHHHHHHHHHHTTCCEEEEEECSTTCSH-HHHHH
T ss_pred ccHHHHHHHHHHHHhCCCceecccccccc--ccCCcccc--CC---HHHHHHHHHHHcCCcEEEEEEecchhhH-HHHHH
Confidence 99999999999999999999987654422 33555554 43 3578999999999999999998777665 56778
Q ss_pred HHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecccchhcc
Q 002352 172 TDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTNLLR 251 (932)
Q Consensus 172 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~~~~~ 251 (932)
.+.+.+.|++|+....++ ..+.++..+|.++++.++++||+.+....+..++++|+++||+.++|+||+++.+.....
T Consensus 150 ~~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~ 227 (389)
T 4gpa_A 150 MEKAGQNGWHVSAICVEN--FNDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDIS 227 (389)
T ss_dssp HHHHHTTTCEEEEEECTT--CCHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEEEECSSBGGGSC
T ss_pred HHHHHhcCceEEEEeecC--CcchhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEEEEeCccccchh
Confidence 889999999999876643 567889999999999999999999999999999999999999999999999988765433
Q ss_pred cCChhhhhhccceEEEeecCCCChhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHHHHHhcccccccccc
Q 002352 252 TLEPSVIDSMQGVIGVRPYVPKTKAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEKAGITSFGFDKT 331 (932)
Q Consensus 252 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~Al~~~~~~~~~~~~~ 331 (932)
. ........|+.+++.+.+..+.+++|.++|++.+.+.++... ..++.+++++||||+++|+|++++..........
T Consensus 228 ~--~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~~~~ 304 (389)
T 4gpa_A 228 L--ERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSE-TPPKYTSALTYDGVLVMAETFRSLRRQKIDISRR 304 (389)
T ss_dssp C--HHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTT-SCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCT
T ss_pred h--hhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhcccCC-CChhHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 2 345667889999999999999999999999998877554332 3678999999999999999999998765433222
Q ss_pred ccCCCCCccccccccCChHHHHHHhhcceeeeeeeeEEee-CCccccccEEEEEee-cCeEEEEEEcCCCCccc
Q 002352 332 NVSSNATDLEAFGISRNGPKLLQALSSTRFKGLTGDYVFV-DGQLQSSAFEIINVN-NGARGVGFWTPEKGLTL 403 (932)
Q Consensus 332 ~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~~f~-~g~~~~~~~~I~n~~-~g~~~vG~w~~~~g~~~ 403 (932)
. .+....|....+|.+|..|+++|++++|+|+||++.|| +|+|....|+|+|++ +|+++||+|++.+|+..
T Consensus 305 ~-~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~~VG~W~~~~gl~~ 377 (389)
T 4gpa_A 305 G-NAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKLVL 377 (389)
T ss_dssp T-CCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred C-CccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEEEEEEEEECCCCeEE
Confidence 1 22223455566899999999999999999999999997 999988899999999 88999999999998864
No 9
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=1.3e-44 Score=425.56 Aligned_cols=391 Identities=19% Similarity=0.278 Sum_probs=324.7
Q ss_pred CCccEEEEEEEeCCCc-------------cchhHHHHHHHHHHHHhcCCCCC-CcEEEEEEecCCCCHHHHHHHHHHHHh
Q 002352 15 TTIPVNVGLVLDMNGE-------------DGKIALSCINMSLSDFYNSNSHY-KTRLLLNTRNSKGDVVAAAAAALDLLN 80 (932)
Q Consensus 15 ~~~~i~IG~i~~~s~~-------------~g~~~~~a~~lAv~~iN~~~~~~-g~~l~~~~~D~~~~~~~a~~~a~~li~ 80 (932)
.+++|+||+++|++|. .|.....|+.+|+|+||++++++ |++|+++++|+++++..|++++.++++
T Consensus 11 ~~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l~ 90 (555)
T 2e4u_A 11 IEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFVR 90 (555)
T ss_dssp ECCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHHHHHh
Confidence 4678999999999873 36678899999999999999998 999999999999999999999998885
Q ss_pred ------------------------cCCeEEEEccCChhHHHHHHHhcCCCCccEEecccCCCCccC-CCCCceEecccCc
Q 002352 81 ------------------------NVLVQAILGPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTS-IRSSYFFRGSLND 135 (932)
Q Consensus 81 ------------------------~~~v~aiiGp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~-~~~p~~~r~~ps~ 135 (932)
+++|.|||||.+|..+.+++.+++.+++|+|+++++++.|++ .++|||||+.|++
T Consensus 91 ~~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~d 170 (555)
T 2e4u_A 91 ASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPD 170 (555)
T ss_dssp TTC--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCH
T ss_pred CcCcccCCCCcccCCCccccccccCCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCCh
Confidence 568999999999999999999999999999999999999987 4799999999999
Q ss_pred hhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHh-cCCceEEEE
Q 002352 136 SSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLF-TMQTRVFIL 214 (932)
Q Consensus 136 ~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~-~~~~~viil 214 (932)
..|+.++++++++|||++|++|++|++||....+.|++.+++.|++|++...++...+..++..++.+|+ ++++||||+
T Consensus 171 ~~~~~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~~s~a~vIi~ 250 (555)
T 2e4u_A 171 FYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVL 250 (555)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEE
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeCCCCChHHHHHHHHHHhccCCCCEEEE
Confidence 9999999999999999999999999999999999999999999999999888876556788999999996 479999999
Q ss_pred EeChhhHHHHHHHHHhCCccccceEEEEecccchhcccCChhhhhhccceEEEeecCCCChhHHH---------------
Q 002352 215 HMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTNLLRTLEPSVIDSMQGVIGVRPYVPKTKAFEN--------------- 279 (932)
Q Consensus 215 ~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~--------------- 279 (932)
++...++..+++++++.|+ +++||.+++|........ ...+.++|++++.++....+.+++
T Consensus 251 ~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~~~-~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~~p~~~~ 326 (555)
T 2e4u_A 251 FMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESIVK-GSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNHRNPW 326 (555)
T ss_dssp ECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGGTT-TCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTT
T ss_pred EcCHHHHHHHHHHHHHhcC---CeEEEEeccccccchhhc-cchhhcceEEEEEeccCCCCcHHHHHhhCCcccCCCCHH
Confidence 9999999999999999997 789999998875432221 124568999999987665555554
Q ss_pred HHHHHHHhhhccCCCC----------Cc-----cccchhhHHHHHHHHHHHHHHHHhccccccccccccCCCCCcccccc
Q 002352 280 FRVRWKRKFLQENPSL----------FD-----VELNILGLFAYDATRALAVAVEKAGITSFGFDKTNVSSNATDLEAFG 344 (932)
Q Consensus 280 f~~~~~~~~~~~~~~~----------~~-----~~~~~~a~~~YDav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (932)
|.+.|+++|+|..+.. +. ..+..+++.+||||+++|+||++++....... . ..|.. .
T Consensus 327 ~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~~----~---~~~~~-~ 398 (555)
T 2e4u_A 327 FRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQT----T---KLCDA-M 398 (555)
T ss_dssp HHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTTC----S---SCCGG-G
T ss_pred HHHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCCC----C---ccccc-c
Confidence 4557888898853210 00 11456889999999999999999874211100 0 11222 1
Q ss_pred ccCChHHHHH-Hhhcceee------eeeee-EEee-CCccccccEEEEEee--cC---eEEEEEEcCCCCccccccCCCc
Q 002352 345 ISRNGPKLLQ-ALSSTRFK------GLTGD-YVFV-DGQLQSSAFEIINVN--NG---ARGVGFWTPEKGLTLKLRSNST 410 (932)
Q Consensus 345 ~~~~g~~l~~-~L~~~~f~------G~tG~-~~f~-~g~~~~~~~~I~n~~--~g---~~~vG~w~~~~g~~~~~~~~~~ 410 (932)
...++++|++ +|++++|+ |++|+ +.|| +|++. ..|+|+|++ +| +++||.|++ .+.
T Consensus 399 ~~~~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~~-~~y~I~~~~~~~g~~~~~~VG~~~~--~l~-------- 467 (555)
T 2e4u_A 399 KILDGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDGM-GRYNVFNLQQTGGKYSYLKVGHWAE--TLS-------- 467 (555)
T ss_dssp TSCCHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCCC-CCEEEEEEECTTSSCEEEEEEEESS--SEE--------
T ss_pred CCCCcccccHHhHhceeecccccccCCCCCeEEEcCCCCcc-ceEEEEEEEecCCcEEEEEEEEecc--eEE--------
Confidence 2357889999 99999999 99998 9997 99964 789999996 43 899999995 232
Q ss_pred cCCCccceEeCCCCCCCCCCCC
Q 002352 411 TKSKLRPIIWPGDSTSDPKGWE 432 (932)
Q Consensus 411 ~~~~~~~i~Wpg~~~~~P~~~~ 432 (932)
.+.+.|.|++ .++|++.|
T Consensus 468 --i~~~~I~W~~--~~~P~S~C 485 (555)
T 2e4u_A 468 --LDVDSIHWSR--NSVPTSQC 485 (555)
T ss_dssp --CCGGGCCCTT--SSCCCCCS
T ss_pred --EeccccccCC--CCCcceee
Confidence 2356799988 67899987
No 10
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=8.1e-45 Score=416.59 Aligned_cols=377 Identities=15% Similarity=0.158 Sum_probs=301.0
Q ss_pred CCccEEEEEEEeCCCc---cchhHHHHHHHHHHHHhcCCC----CC-CcEEEEEEecCCCCHHHHHHHHHHHHh---cCC
Q 002352 15 TTIPVNVGLVLDMNGE---DGKIALSCINMSLSDFYNSNS----HY-KTRLLLNTRNSKGDVVAAAAAALDLLN---NVL 83 (932)
Q Consensus 15 ~~~~i~IG~i~~~s~~---~g~~~~~a~~lAv~~iN~~~~----~~-g~~l~~~~~D~~~~~~~a~~~a~~li~---~~~ 83 (932)
.+++|+||+++|++|. .|.....|+++|+++||++++ ++ |++|+++++|++|++. |+..+.+++. +++
T Consensus 6 ~~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~ 84 (441)
T 1jdp_A 6 PPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGAK 84 (441)
T ss_dssp CCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTCC
T ss_pred CCCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHHHHHHHHHhhccCC
Confidence 4568999999999983 356678999999999999987 55 8999999999999998 7766666553 338
Q ss_pred eEEEEccCChhHHHHHHHhcCCCCccEEecccCCCCccCC--CCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcC
Q 002352 84 VQAILGPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTSI--RSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDN 161 (932)
Q Consensus 84 v~aiiGp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~--~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~ 161 (932)
|.+||||.+|..+.+++.+++.+++|+|+++++++.+++. .+||+||+.|++..++.++++++++|||++|++|++|+
T Consensus 85 v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d~ 164 (441)
T 1jdp_A 85 PDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDD 164 (441)
T ss_dssp CSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred ceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 9999999999999999999999999999999999999874 69999999999999999999999999999999999999
Q ss_pred CcCCC---hHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccce
Q 002352 162 QYGEE---MIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGC 238 (932)
Q Consensus 162 ~~g~~---~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~ 238 (932)
+||+. ..+.|.+.+++.|+||+....++. +..++..++++|+ +++|||++++...++..+++++++.||+.+.|
T Consensus 165 ~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~--~~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~~~~~ 241 (441)
T 1jdp_A 165 KLERNCYFTLEGVHEVFQEEGLHTSIYSFDET--KDLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMTSGDY 241 (441)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTCEEEEEEECTT--SCCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCTTTTC
T ss_pred CcccchHHHHHHHHHHHHhcCcEEEEEEecCC--cccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCCCCCE
Confidence 99999 999999999999999998876653 3346899999999 99999999999999999999999999998889
Q ss_pred EEEEecc----------cchhcccCChhhhhhccceEEEeecCCCChhHHHHHHHHHHhhhcc-CCCCCccccchhhHHH
Q 002352 239 VWIMTEG----------MTNLLRTLEPSVIDSMQGVIGVRPYVPKTKAFENFRVRWKRKFLQE-NPSLFDVELNILGLFA 307 (932)
Q Consensus 239 ~wi~t~~----------~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~a~~~ 307 (932)
+||.++. |... +...........++.++..+.+..|.+++|.++|++++... +. ....++.+++.+
T Consensus 242 v~i~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~~~~--~~~~~~~~~~~~ 318 (441)
T 1jdp_A 242 AFFNIELFNSSSYGDGSWKRG-DKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLN--MEDYVNMFVEGF 318 (441)
T ss_dssp EEEEECSSCCCSTTTCTTCCS-STTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCC--CCSSCCHHHHHH
T ss_pred EEEEEeccccccccCCCCccC-CcccHHHHHHHHhheEEeecCCCCchHHHHHHHHHHHHhhCCCC--ccchhhhHHHHH
Confidence 9999883 3211 11111111345667777777778899999999999884321 11 001356788999
Q ss_pred HHHHHHHHHHHHHhccccccccccccCCCCCccccccccCChHHHHHHhhcceeeeeeeeEEee-CCccccccEEEEEee
Q 002352 308 YDATRALAVAVEKAGITSFGFDKTNVSSNATDLEAFGISRNGPKLLQALSSTRFKGLTGDYVFV-DGQLQSSAFEIINVN 386 (932)
Q Consensus 308 YDav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~~f~-~g~~~~~~~~I~n~~ 386 (932)
||||+++|+|++++.... ..+.++++|.++|++++|+|++|++.|+ +|++. ..|+|+|++
T Consensus 319 YdAv~~~A~Al~~~~~~~------------------~~~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~~-~~~~I~~~~ 379 (441)
T 1jdp_A 319 HDAILLYVLALHEVLRAG------------------YSKKDGGKIIQQTWNRTFEGIAGQVSIDANGDRY-GDFSVIAMT 379 (441)
T ss_dssp HHHHHHHHHHHHHHHHTT------------------CCTTCHHHHHHHHSSEEEEETTEEEEECTTSBBC-CEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhC------------------CCCCCHHHHHHHHhCCeeECCccceEECCCCCcc-ccEEEEecc
Confidence 999999999999985321 0134689999999999999999999997 89975 889999997
Q ss_pred ---cC-eEEEEEEcCCCCccccccCCCccCCCccceEeCCCCC
Q 002352 387 ---NG-ARGVGFWTPEKGLTLKLRSNSTTKSKLRPIIWPGDST 425 (932)
Q Consensus 387 ---~g-~~~vG~w~~~~g~~~~~~~~~~~~~~~~~i~Wpg~~~ 425 (932)
+| ++.||.|++.++..... ...+|+|||+..
T Consensus 380 ~~~~g~~~~VG~~~~~~~~~~~~--------~~~~i~w~g~~l 414 (441)
T 1jdp_A 380 DVEAGTQEVIGDYFGKEGRFEMR--------PNVKYPWGPLKL 414 (441)
T ss_dssp ETTTTEEEEEEEEETTTTEEEEC--------C-----------
T ss_pred cCCCCceEEEEEEcCCCCeEEEC--------CCceeeCCCCCc
Confidence 56 89999999977543221 246789998754
No 11
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=5.2e-45 Score=417.79 Aligned_cols=381 Identities=17% Similarity=0.165 Sum_probs=315.8
Q ss_pred ccEEEEEEEeCCC---ccchhHHH-HHHHHHHHHhcCCCCC-CcEEEEEEecC-----CCCHHHHHHHHHHHHhcCCeEE
Q 002352 17 IPVNVGLVLDMNG---EDGKIALS-CINMSLSDFYNSNSHY-KTRLLLNTRNS-----KGDVVAAAAAALDLLNNVLVQA 86 (932)
Q Consensus 17 ~~i~IG~i~~~s~---~~g~~~~~-a~~lAv~~iN~~~~~~-g~~l~~~~~D~-----~~~~~~a~~~a~~li~~~~v~a 86 (932)
++|+||+++|++| ..|..... |+++|+++||++++++ |++|+++++|+ +|++..++..+++++.+++|.+
T Consensus 1 g~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~a 80 (435)
T 1dp4_A 1 SDLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAV 80 (435)
T ss_dssp CEEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSE
T ss_pred CceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceE
Confidence 3699999999997 45666667 9999999999999988 99999999999 5556688889999988889999
Q ss_pred EEccCChhHHHHHHHhcCCCCccEEecccCCCCccCC-CCCceEecccCchhHHHHHHHHHHHcCCeEEEEE------EE
Q 002352 87 ILGPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTSI-RSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPI------YV 159 (932)
Q Consensus 87 iiGp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~-~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii------~~ 159 (932)
||||.+|..+.+++.+++.+++|+|+++++++.+++. .+||+||+.|++..++.++++++++|+|++|++| ++
T Consensus 81 viG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~~~ 160 (435)
T 1dp4_A 81 FLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGD 160 (435)
T ss_dssp EECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSS
T ss_pred EECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCCCC
Confidence 9999999999999999999999999999999999874 5999999999999999999999999999999999 66
Q ss_pred cCCcCCChHHHHHHHHHh-CCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccce
Q 002352 160 DNQYGEEMIPSLTDALQA-IDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGC 238 (932)
Q Consensus 160 d~~~g~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~ 238 (932)
+++|| ...+.+.+.+.+ .|++|+....++ .+..++..++++|++ ++|+|++++...++..++++|++.|+..+++
T Consensus 161 ~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~ 236 (435)
T 1dp4_A 161 DRPCF-FIVEGLYMRVRERLNITVNHQEFVE--GDPDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGLTGEDY 236 (435)
T ss_dssp CCHHH-HHHHHHHHHHHHHHCCEEEEEEECT--TCGGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTTCCTTTC
T ss_pred cchHH-HHHHHHHHHHHhhcCeEEEEEEEec--CchhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHHHHcCCCCCCE
Confidence 67777 456778888888 999999887653 356789999999998 9999999999999999999999999988789
Q ss_pred EEEEecccchhcc---------------cCChhhhhhccceEEEeecCCCChhHHHHHHHHHHhhhccCC-CCCccccch
Q 002352 239 VWIMTEGMTNLLR---------------TLEPSVIDSMQGVIGVRPYVPKTKAFENFRVRWKRKFLQENP-SLFDVELNI 302 (932)
Q Consensus 239 ~wi~t~~~~~~~~---------------~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~ 302 (932)
+||.++.+..... .......+.++|++++.++.+.++.+++|.++|+++++.... ......++.
T Consensus 237 ~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 316 (435)
T 1dp4_A 237 VFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVEDGLKNI 316 (435)
T ss_dssp EEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCCCCSGGGH
T ss_pred EEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCCChhHHHHHHHHHHHhcCCCCcccccchhhH
Confidence 9999998765321 001234567899999988888889999999999888753100 000013677
Q ss_pred hhHHHHHHHHHHHHHHHHhccccccccccccCCCCCccccccccCChHHHHHHhhcceeeeeeeeEEee-CCccccccEE
Q 002352 303 LGLFAYDATRALAVAVEKAGITSFGFDKTNVSSNATDLEAFGISRNGPKLLQALSSTRFKGLTGDYVFV-DGQLQSSAFE 381 (932)
Q Consensus 303 ~a~~~YDav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~~f~-~g~~~~~~~~ 381 (932)
+++++|||++++|+|++++.... +.+.++++|.++|++++|+|++|++.|+ +|++. ..|.
T Consensus 317 ~~~~~ydav~~~a~Al~~~~~~~------------------~~~~~~~~l~~~l~~~~f~g~~G~v~fd~~g~~~-~~~~ 377 (435)
T 1dp4_A 317 IPASFHDGLLLYVQAVTETLAQG------------------GTVTDGENITQRMWNRSFQGVTGYLKIDRNGDRD-TDFS 377 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT------------------CCTTCHHHHHHTTTTEEEEETTEEEEECTTSBBC-CCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC------------------CCCCCHHHHHHHHhCceeeccceeEEECCCCCcc-ceeE
Confidence 89999999999999999985321 1134689999999999999999999997 89976 6999
Q ss_pred EEEee--cC-eEEEEEEcCCCCccccccCCCccCCCccceEeCCCCCCCCCC
Q 002352 382 IINVN--NG-ARGVGFWTPEKGLTLKLRSNSTTKSKLRPIIWPGDSTSDPKG 430 (932)
Q Consensus 382 I~n~~--~g-~~~vG~w~~~~g~~~~~~~~~~~~~~~~~i~Wpg~~~~~P~~ 430 (932)
|+++. +| ++.||.|++..+-. .+ .+.+.|+||++ .+|++
T Consensus 378 i~~~~~~~g~~~~vg~~~~~~~~l-~~-------~~~~~i~W~~~--~~P~~ 419 (435)
T 1dp4_A 378 LWDMDPETGAFRVVLNYNGTSQEL-MA-------VSEHKLYWPLG--YPPPD 419 (435)
T ss_dssp EEEECTTTCCEEEEEEECTTTCCE-EE-------STTCCCCCTTS--SCCCS
T ss_pred EEEecCCCCcEEEEEEecCCCceE-EE-------cCCceeeCCCC--CCCCC
Confidence 99994 55 99999999876411 11 03467999987 44543
No 12
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=1.8e-44 Score=415.08 Aligned_cols=385 Identities=19% Similarity=0.270 Sum_probs=317.0
Q ss_pred CCccEEEEEEEeCC---------C---c-cchhHHHHHHHHHHHHhcCCCCC-CcEEEEEEecCCCCHHHHHHHHHHHHh
Q 002352 15 TTIPVNVGLVLDMN---------G---E-DGKIALSCINMSLSDFYNSNSHY-KTRLLLNTRNSKGDVVAAAAAALDLLN 80 (932)
Q Consensus 15 ~~~~i~IG~i~~~s---------~---~-~g~~~~~a~~lAv~~iN~~~~~~-g~~l~~~~~D~~~~~~~a~~~a~~li~ 80 (932)
.+++|.||+++|++ + . .|.+...|+.+|+|+||++++++ |++|+++++|+++++..|++++.+|++
T Consensus 10 ~~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~ll~ 89 (479)
T 3sm9_A 10 IEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFVR 89 (479)
T ss_dssp ECCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHHHHHHh
Confidence 46789999999996 2 2 57788999999999999999998 999999999999999999999999998
Q ss_pred c------------------------CCeEEEEccCChhHHHHHHHhcCCCCccEEecccCCCCccC-CCCCceEecccCc
Q 002352 81 N------------------------VLVQAILGPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTS-IRSSYFFRGSLND 135 (932)
Q Consensus 81 ~------------------------~~v~aiiGp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~-~~~p~~~r~~ps~ 135 (932)
+ ++|.|||||.+|..+.+++.+++.+++|+|+++++++.|++ .++||+||+.|++
T Consensus 90 ~~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd 169 (479)
T 3sm9_A 90 ASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPD 169 (479)
T ss_dssp TCC-----------------------CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCCT
T ss_pred CCCccCCCCCCccCCCCccccccCCCceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCcH
Confidence 6 47999999999999999999999999999999999999998 4699999999999
Q ss_pred hhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHH-HHHhcCCceEEEE
Q 002352 136 SSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKEL-YKLFTMQTRVFIL 214 (932)
Q Consensus 136 ~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l-~~l~~~~~~viil 214 (932)
..++.++++++++|||+||++|++|++||....+.|++++++.|+||++.+.++....+.++..++ +.++++++||||+
T Consensus 170 ~~~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vIi~ 249 (479)
T 3sm9_A 170 FYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVL 249 (479)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEEEE
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCCeEEEE
Confidence 999999999999999999999999999999999999999999999999999887666678899999 6688899999999
Q ss_pred EeChhhHHHHHHHHHhCCccccceEEEEecccchhcccCChhhhhhccceEEEeecCCCChhHHHHHH------------
Q 002352 215 HMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTNLLRTLEPSVIDSMQGVIGVRPYVPKTKAFENFRV------------ 282 (932)
Q Consensus 215 ~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~------------ 282 (932)
++...++..+++++++.|+. ++||.+++|........ ...+.++|++++.++..+.|.+++|..
T Consensus 250 ~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~ 325 (479)
T 3sm9_A 250 FMRSDDSRELIAAASRANAS---FTWVASDGWGAQESIIK-GSEHVAYGAITLELASQPVRQFDRYFQSLNPYNNHRNPW 325 (479)
T ss_dssp ECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHHT-TCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTT
T ss_pred EcChHHHHHHHHHHHHhCCE---EEEEEechhhcCccccc-cccccCceEEEEEeccCCCcchhhHhhccCcCcCCCCHH
Confidence 99999999999999999985 89999999975322111 123568999999999999999888754
Q ss_pred ---HHHHhhhccCCCCC----------c-----cccchhhHHHHHHHHHHHHHHHHhccccccccccccCCCCCcccccc
Q 002352 283 ---RWKRKFLQENPSLF----------D-----VELNILGLFAYDATRALAVAVEKAGITSFGFDKTNVSSNATDLEAFG 344 (932)
Q Consensus 283 ---~~~~~~~~~~~~~~----------~-----~~~~~~a~~~YDav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (932)
.|+..|+|..+... . .........+||||+++|+|||++....+... . ..|...
T Consensus 326 ~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~----~---~~c~~~- 397 (479)
T 3sm9_A 326 FRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPNT----T---KLCDAM- 397 (479)
T ss_dssp HHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTC----S---SCCHHH-
T ss_pred HHHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCCC----C---cCCCCC-
Confidence 68888988643211 0 01123346899999999999999865322110 0 122221
Q ss_pred ccCChHHHH-HHhhcceeeee-------eeeEEee-CCccccccEEEEEee--cC---eEEEEEEcCCCCccccccCCCc
Q 002352 345 ISRNGPKLL-QALSSTRFKGL-------TGDYVFV-DGQLQSSAFEIINVN--NG---ARGVGFWTPEKGLTLKLRSNST 410 (932)
Q Consensus 345 ~~~~g~~l~-~~L~~~~f~G~-------tG~~~f~-~g~~~~~~~~I~n~~--~g---~~~vG~w~~~~g~~~~~~~~~~ 410 (932)
...++++|+ ++|++++|.+. .+.+.|| +|+. ...|+|+||+ +| +++||.|+ ..+.
T Consensus 398 ~~~~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~-~~~YdI~n~~~~~~~~~~~~VG~~~--~~l~-------- 466 (479)
T 3sm9_A 398 KILDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDG-MGRYNVFNFQNVGGKYSYLKVGHWA--ETLS-------- 466 (479)
T ss_dssp HSCCHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBC-CCCEEEEEEEESSSCEEEEEEEEES--SSEE--------
T ss_pred CCcChHHHHHHHhcceeeccccCccccCCCeEEECCCCCc-ccceEEEEEEECCCcEEEEEEEEEe--ceEE--------
Confidence 234688999 99999999998 4568887 9996 5799999998 44 78999998 2332
Q ss_pred cCCCccceEeCCCC
Q 002352 411 TKSKLRPIIWPGDS 424 (932)
Q Consensus 411 ~~~~~~~i~Wpg~~ 424 (932)
.+.+.|.|||+.
T Consensus 467 --i~~~~I~W~~~~ 478 (479)
T 3sm9_A 467 --LDVNSIHWSRNS 478 (479)
T ss_dssp --ECGGGCCCC---
T ss_pred --EecceeEeCCCC
Confidence 245679999864
No 13
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=1e-44 Score=407.73 Aligned_cols=353 Identities=19% Similarity=0.285 Sum_probs=291.2
Q ss_pred CCccEEEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHH-HHhcCCeEEEEc----
Q 002352 15 TTIPVNVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALD-LLNNVLVQAILG---- 89 (932)
Q Consensus 15 ~~~~i~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~-li~~~~v~aiiG---- 89 (932)
.+++|+||+++|++ ....|+++|++++|++++..+++++++..|+++||.+++.++++ |+++ +|.||||
T Consensus 2 ~~~~i~IG~i~~~s-----~~~~~~~lAv~~iN~~~~~~~~~l~~~~~d~~~d~~~a~~~~~~~Li~~-~V~aiiG~~~~ 75 (384)
T 3qek_A 2 DPKIVNIGAVLSTK-----KHEQIFREAVNQANKRHFTRKIQLQATSVTHRPNAIQMALSVCEDLISS-QVYAILVSHPP 75 (384)
T ss_dssp CCEEEEEEEEESSH-----HHHHHHHHHHHHHHHHSCCSSEEEEEEEEECCSSHHHHHHHHHHHTGGG-TEEEEEECC--
T ss_pred CceEEEEeEEeeCc-----hHHHHHHHHHHHHhccccCCceEEEEEEecccCCHHHHHHHHHHHHHHc-CceEEEEecCC
Confidence 46789999999998 57899999999999998878999999999999999999977666 7876 9999999
Q ss_pred -cCChhHHHHHHHhcCCCCccEEecccCCCCccC-CCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCCh
Q 002352 90 -PEKSMQTNFIIQLGNKSQVPILSFSATSPSLTS-IRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEM 167 (932)
Q Consensus 90 -p~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~-~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~ 167 (932)
|.+|..+.+++.+++.+++|+|+++++++.+++ ..+||+||+.|++..++.+++++++++||++|++||+|++||++.
T Consensus 76 ~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G~~~ 155 (384)
T 3qek_A 76 APTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAA 155 (384)
T ss_dssp ------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHH
T ss_pred CCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHH
Confidence 678888999999999999999999999999987 568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCce-----------eeee-------eecC-CCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHH
Q 002352 168 IPSLTDALQAIDTR-----------VPYR-------SVIS-PLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKA 228 (932)
Q Consensus 168 ~~~l~~~l~~~g~~-----------v~~~-------~~~~-~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a 228 (932)
.+.|++.+++.|++ +.+. +.++ ...++.|+..++.+|+++++|+||+++.+..+..++++|
T Consensus 156 ~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a 235 (384)
T 3qek_A 156 QKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYKSA 235 (384)
T ss_dssp HHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECTTCSCCHHHHHHHHTSSCCEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCccccccccccceeeeccccCcccceecccCCchhhHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHH
Confidence 99999999999874 3332 2221 123456799999999999999999999999999999999
Q ss_pred HhCCccccceEEEEecccchhcccCChhhhhhccceEEEeecCCCChhHHHHHHHHHHhhhccCCCCCccccchhhHHHH
Q 002352 229 NEIGLMNKGCVWIMTEGMTNLLRTLEPSVIDSMQGVIGVRPYVPKTKAFENFRVRWKRKFLQENPSLFDVELNILGLFAY 308 (932)
Q Consensus 229 ~~~g~~~~~~~wi~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~Y 308 (932)
+++||++++|+||.++.+.... ...+.++|+++++.+.+. ..++++|
T Consensus 236 ~~~g~~~~~~~~i~~~~~~~~~-----~~~~~~~g~lg~~~~~~~----------------------------~~~~~~Y 282 (384)
T 3qek_A 236 AMLDMTGAGYVWLVGEREISGS-----ALRYAPDGIIGLQLINGK----------------------------NESAHIS 282 (384)
T ss_dssp HHTTCSSTTCEEECCSGGGSGG-----GGSSCCTTCEEEEETTTT----------------------------CHHHHHH
T ss_pred HHcCCccCCeEEEEeccccccc-----cccccCCccEEEEEcCCC----------------------------chhHHHH
Confidence 9999999899999999876432 233568999999987543 2378899
Q ss_pred HHHHHHHHHHHHhccccccccccccCCCCCcc-ccccccCChHHHHHHhhccee-eeeeeeEEee-CCccccccEEEEEe
Q 002352 309 DATRALAVAVEKAGITSFGFDKTNVSSNATDL-EAFGISRNGPKLLQALSSTRF-KGLTGDYVFV-DGQLQSSAFEIINV 385 (932)
Q Consensus 309 Dav~~la~Al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~L~~~~f-~G~tG~~~f~-~g~~~~~~~~I~n~ 385 (932)
|||+++|+|++++..... ..... .+| +...+|..+..|.+.+.+++| +|++|++.|+ +|++....|+|+|+
T Consensus 283 dAV~~~a~Al~~~~~~~~-~~~~~-----~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~~~~I~~~ 356 (384)
T 3qek_A 283 DAVAVVAQAIHELFEMEN-ITDPP-----RGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQYSIMNL 356 (384)
T ss_dssp HHHHHHHHHHHHHHTSSS-CCCCC-----SCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSCCEEEEEE
T ss_pred HHHHHHHHHHHHHHhccC-CCCCC-----CccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCcccEEEEEE
Confidence 999999999999875431 11111 123 234578899999999999998 9999999997 99987899999999
Q ss_pred e-cCeEEEEEEcCCCCccccccCCCccCCCccceEeCCC
Q 002352 386 N-NGARGVGFWTPEKGLTLKLRSNSTTKSKLRPIIWPGD 423 (932)
Q Consensus 386 ~-~g~~~vG~w~~~~g~~~~~~~~~~~~~~~~~i~Wpg~ 423 (932)
+ +++++||.|+.. .+. .+.+.|.||++
T Consensus 357 ~~~~~~~VG~w~~~-~l~----------i~~~~i~W~~~ 384 (384)
T 3qek_A 357 QNRKLVQVGIFNGS-YII----------QNDRKIIWPGG 384 (384)
T ss_dssp ETTEEEEEEEECSS-SEE----------ECSSCCCCSCC
T ss_pred cCCceEEEEEEeCC-eEe----------eccceeeCCCC
Confidence 9 889999999943 232 23567999975
No 14
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=3.3e-43 Score=406.47 Aligned_cols=393 Identities=19% Similarity=0.265 Sum_probs=312.2
Q ss_pred CCccEEEEEEEeCCC-----------------ccchhHHHHHHHHHHHHhcCCCCC-CcEEEEEEecCCCCHHHHHHHHH
Q 002352 15 TTIPVNVGLVLDMNG-----------------EDGKIALSCINMSLSDFYNSNSHY-KTRLLLNTRNSKGDVVAAAAAAL 76 (932)
Q Consensus 15 ~~~~i~IG~i~~~s~-----------------~~g~~~~~a~~lAv~~iN~~~~~~-g~~l~~~~~D~~~~~~~a~~~a~ 76 (932)
.+++|.||+++|... ..|.+...|+.+|+|+||++++++ |++|+++++|+++++..|++++.
T Consensus 14 ~~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~~~a~ 93 (496)
T 3ks9_A 14 MDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSI 93 (496)
T ss_dssp ECCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHHHHH
T ss_pred cCCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHHHHHH
Confidence 567899999999752 134678889999999999999887 89999999999999999999999
Q ss_pred HHH----------------------------hcCCeEEEEccCChhHHHHHHHhcCCCCccEEecccCCCCccC-CCCCc
Q 002352 77 DLL----------------------------NNVLVQAILGPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTS-IRSSY 127 (932)
Q Consensus 77 ~li----------------------------~~~~v~aiiGp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~-~~~p~ 127 (932)
+++ .+++|.|||||.+|..+.+++.+++.+++|+|+++++++.+++ ..+||
T Consensus 94 ~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~ 173 (496)
T 3ks9_A 94 EFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKY 173 (496)
T ss_dssp HHHSTTC--------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTT
T ss_pred HHHHhhhccccccCCCCccccCcccccccccCCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCCCc
Confidence 998 3568999999999999999999999999999999999999998 46999
Q ss_pred eEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcC
Q 002352 128 FFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM 207 (932)
Q Consensus 128 ~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~ 207 (932)
+||+.|++..++.++++++++|||+||++|++|++||....+.|++++++.|+||++.+.++...+..++..++.+|+++
T Consensus 174 ~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~~~ 253 (496)
T 3ks9_A 174 FLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRER 253 (496)
T ss_dssp EEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHTT
T ss_pred eEEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999998887667788999999999975
Q ss_pred --CceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecccchhcccCChhhhhhccceEEEeecCCCChhHHHHHH---
Q 002352 208 --QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTNLLRTLEPSVIDSMQGVIGVRPYVPKTKAFENFRV--- 282 (932)
Q Consensus 208 --~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~--- 282 (932)
+++||++++....+..+++++++.|++++ +.||.+++|........ .....++|++++.++.++.+.+++|..
T Consensus 254 ~~~a~vii~~~~~~~~~~l~~~~~~~g~~~k-~~~i~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~ 331 (496)
T 3ks9_A 254 LPKARVVVCFCEGMTVRGLLSAMRRLGVVGE-FSLIGSDGWADRDEVIE-GYEVEANGGITIKLQSPEVRSFDDYFLKLR 331 (496)
T ss_dssp TTTTCEEEEECCHHHHHHHHHHHHHHTCCSC-CEEEECTTTTTCHHHHT-TCHHHHTTCEEEEECCCCCHHHHHHHTTCC
T ss_pred cCceEEEEEecChHHHHHHHHHHHHhCCCCc-EEEEEechhcccccccc-ccccccCceEEEeccCCcCcchHhHhccCC
Confidence 88999999999999999999999998643 67999999975322222 234568999999999999999998854
Q ss_pred ------------HHHHhhhccCCCCC--------------c----cccchhhHHHHHHHHHHHHHHHHhccccccccccc
Q 002352 283 ------------RWKRKFLQENPSLF--------------D----VELNILGLFAYDATRALAVAVEKAGITSFGFDKTN 332 (932)
Q Consensus 283 ------------~~~~~~~~~~~~~~--------------~----~~~~~~a~~~YDav~~la~Al~~~~~~~~~~~~~~ 332 (932)
.|...|+|..+... . .........+|+||+++|+|||++....+...
T Consensus 332 p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~~~~--- 408 (496)
T 3ks9_A 332 LDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPGH--- 408 (496)
T ss_dssp TTTCCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTC---
T ss_pred cCCCCCCHHHHHHHHHHcCCCCCCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccCCCC---
Confidence 58888998643210 0 00111224699999999999999875322110
Q ss_pred cCCCCCccccccccCChHHHHHHhhcceeeeeeee-EEee-CCccccccEEEEEee---cC---eEEEEEEcCCCCcccc
Q 002352 333 VSSNATDLEAFGISRNGPKLLQALSSTRFKGLTGD-YVFV-DGQLQSSAFEIINVN---NG---ARGVGFWTPEKGLTLK 404 (932)
Q Consensus 333 ~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~-~~f~-~g~~~~~~~~I~n~~---~g---~~~vG~w~~~~g~~~~ 404 (932)
. ..|..... ..+++|++.|++++|.+.+|+ +.|| +|+. ...|+|+||+ +| +++||.|+.. .+.
T Consensus 409 -~---~~c~~~~~-~~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~-~~~YdI~n~~~~~~~~~~~~~VG~~~~~-~l~-- 479 (496)
T 3ks9_A 409 -V---GLCDAMKP-IDGSKLLDFLIKSSFIGVSGEEVWFDEKGDA-PGRYDIMNLQYTEANRYDYVHVGTWHEG-VLN-- 479 (496)
T ss_dssp -S---SCCGGGSS-CCHHHHHHHHHTCEEECTTSCEEECCTTSCC-CCEEEEEEEEECC--CEEEEEEEEEETT-EEE--
T ss_pred -C---CCCcCCCC-CCHHHHHHHHHhcCCcCCCCCEEEECCCCCc-cceEEEEEEEECCCCCEEEEEEEEEeCC-eEE--
Confidence 1 12322222 367899999999999999995 7887 9995 5799999998 44 7899999832 232
Q ss_pred ccCCCccCCCccceEeCCCCCCCCCC
Q 002352 405 LRSNSTTKSKLRPIIWPGDSTSDPKG 430 (932)
Q Consensus 405 ~~~~~~~~~~~~~i~Wpg~~~~~P~~ 430 (932)
.+.+.| |+++..++|+|
T Consensus 480 --------i~~~~i-w~~~~~~vP~~ 496 (496)
T 3ks9_A 480 --------IDDYKI-QMNKSGLVPRG 496 (496)
T ss_dssp --------ECTTTC------------
T ss_pred --------Eehhhc-ccCCCCCCCCC
Confidence 123456 88888888875
No 15
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=3.2e-44 Score=414.29 Aligned_cols=384 Identities=19% Similarity=0.291 Sum_probs=286.1
Q ss_pred CCccEEEEEEEeCCCc-------------cchhHHHHHHHHHHHHhcCCCCC-CcEEEEEEecCCCCHHHHHHHHHHHHh
Q 002352 15 TTIPVNVGLVLDMNGE-------------DGKIALSCINMSLSDFYNSNSHY-KTRLLLNTRNSKGDVVAAAAAALDLLN 80 (932)
Q Consensus 15 ~~~~i~IG~i~~~s~~-------------~g~~~~~a~~lAv~~iN~~~~~~-g~~l~~~~~D~~~~~~~a~~~a~~li~ 80 (932)
.+++|+||+++|+++. .|.....|+.+|+|+||++++++ |++|+++++|+++++..|++++.++++
T Consensus 13 ~~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a~~ll~ 92 (481)
T 3mq4_A 13 IEGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQ 92 (481)
T ss_dssp ECCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHHGGGGG
T ss_pred cCCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHHHHHHh
Confidence 4678999999999972 46788999999999999999998 899999999999999999999999987
Q ss_pred c----------------------CCeEEEEccCChhHHHHHHHhcCCCCccEEecccCCCCccC-CCCCceEecccCchh
Q 002352 81 N----------------------VLVQAILGPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTS-IRSSYFFRGSLNDSS 137 (932)
Q Consensus 81 ~----------------------~~v~aiiGp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~-~~~p~~~r~~ps~~~ 137 (932)
+ ++|.|||||.+|..+.+++.+++.+++|+|+++++++.|++ ..+||+||+.|++..
T Consensus 93 ~~~~~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~ 172 (481)
T 3mq4_A 93 ALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSF 172 (481)
T ss_dssp GGSCCCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCTHH
T ss_pred CCcccCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCchHH
Confidence 4 68999999999999999999999999999999999999998 579999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHh-CCceeeeeeecCCCCChh--HHHHHHHHHh-cCCceEEE
Q 002352 138 QVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQA-IDTRVPYRSVISPLATDD--QIEKELYKLF-TMQTRVFI 213 (932)
Q Consensus 138 ~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~--~~~~~l~~l~-~~~~~vii 213 (932)
++.++++++++|||+||++|++|++||....+.|++.+++ .|+||++.+.++...... ++..++.+++ ++++||||
T Consensus 173 ~~~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~~~~~~~d~~~~l~~i~~~s~a~vIi 252 (481)
T 3mq4_A 173 QAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAVV 252 (481)
T ss_dssp HHHHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHCC---CCCEECCCCCCCCC------CCSHHHHCCCCC----CEE
T ss_pred HHHHHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHHHHHHhCCEEEEEEEEcCCCCccchHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999999999999999999999998885 799999988886554334 7888999998 68999999
Q ss_pred EEeChhhHHHHHHHHHhCCccccceEEEEecccchhcccCChhhhhhccceEEEeecCCCChhHHHHHH-----------
Q 002352 214 LHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTNLLRTLEPSVIDSMQGVIGVRPYVPKTKAFENFRV----------- 282 (932)
Q Consensus 214 l~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~----------- 282 (932)
+++...++..+++++++.|+++ .++||.+++|........ .....++|++++.++....|.+++|..
T Consensus 253 ~~~~~~~~~~l~~~~~~~g~~~-~~~wI~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~ 330 (481)
T 3mq4_A 253 IFANDEDIKQILAAAKRADQVG-HFLWVGSDSWGSKINPLH-QHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNV 330 (481)
T ss_dssp ECCCSSHHHHHC-----------CCCEEEC------------------CCCEEEEECCCCCHHHHHHHHTCCTTTCTTCT
T ss_pred EEEChHHHHHHHHHHHHccCCc-ceEEEEECcccccccccc-ccchhhccEEEEecCcCccccHHHHhhcCCcCcCCCCH
Confidence 9999999999999999999864 389999999975433222 234678999999999999999998854
Q ss_pred ----HHHHhhhccCCCC--------------Cc------cccchhhHHHHHHHHHHHHHHHHhccccccccccccCCCCC
Q 002352 283 ----RWKRKFLQENPSL--------------FD------VELNILGLFAYDATRALAVAVEKAGITSFGFDKTNVSSNAT 338 (932)
Q Consensus 283 ----~~~~~~~~~~~~~--------------~~------~~~~~~a~~~YDav~~la~Al~~~~~~~~~~~~~~~~~~~~ 338 (932)
.|+..|+|..+.. +. .........+||||+++|+|||++....+... . .
T Consensus 331 ~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~----~---~ 403 (481)
T 3mq4_A 331 WFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADY----R---G 403 (481)
T ss_dssp THHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCCC----C---C
Confidence 5888888864321 00 01113456799999999999999875321110 0 1
Q ss_pred ccccccccCChHHHHHHhhcceeeeeee-eEEee-CCccccccEEEEEee---cC---eEEEEEEcCCCCccccccCCCc
Q 002352 339 DLEAFGISRNGPKLLQALSSTRFKGLTG-DYVFV-DGQLQSSAFEIINVN---NG---ARGVGFWTPEKGLTLKLRSNST 410 (932)
Q Consensus 339 ~~~~~~~~~~g~~l~~~L~~~~f~G~tG-~~~f~-~g~~~~~~~~I~n~~---~g---~~~vG~w~~~~g~~~~~~~~~~ 410 (932)
.|.... ...+++|++.|++++|.+.+| .+.|| +|+. ...|+|+||+ +| +++||.|+. .+.
T Consensus 404 ~c~~~~-~~~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~-~~~YdI~n~~~~~~~~~~~~~VG~~~~--~l~-------- 471 (481)
T 3mq4_A 404 VCPEME-QAGGKKLLKYIRNVNFNGSAGTPVMFNKNGDA-PGRYDIFQYQTTNTSNPGYRLIGQWTD--ELQ-------- 471 (481)
T ss_dssp CCHHHH-TSCHHHHHHHHHTCEEECTTSSEEECCTTSCC-CCEEEEEEEC-----CCCEEEEEEEET--TEE--------
T ss_pred CCCCCC-CcCHHHHHHHHhcceeecCCCCEEEECCCCCC-ceeEEEEEEEECCCCcEEEEEEEEEcC--ccE--------
Confidence 222211 236889999999999999999 78897 9995 5899999998 33 689999983 232
Q ss_pred cCCCccceEeC
Q 002352 411 TKSKLRPIIWP 421 (932)
Q Consensus 411 ~~~~~~~i~Wp 421 (932)
.+.+.|.|+
T Consensus 472 --i~~~~i~W~ 480 (481)
T 3mq4_A 472 --LNIEDMQWG 480 (481)
T ss_dssp --EECSCC---
T ss_pred --ecccccccC
Confidence 235678897
No 16
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=7.6e-40 Score=362.69 Aligned_cols=346 Identities=17% Similarity=0.195 Sum_probs=267.8
Q ss_pred CccEEEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEE-ecCCCCHHHHHHHHHHHHhcCCeEEEEc-cCCh
Q 002352 16 TIPVNVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNT-RNSKGDVVAAAAAALDLLNNVLVQAILG-PEKS 93 (932)
Q Consensus 16 ~~~i~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~-~D~~~~~~~a~~~a~~li~~~~v~aiiG-p~~s 93 (932)
+..+.||+++..+.. +.+++-|++..|..... .++..++ +.+.+||..+..++|+++...+|.|||| |.++
T Consensus 2 ~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s~ 74 (364)
T 3qel_B 2 PPSIGIAVILVGTSD-----EVAIKDAHEKDDFHHLS--VVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDTD 74 (364)
T ss_dssp CCEEEEEEEEESSCC-----HHHHTC---------CC--SEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESSC
T ss_pred CCceEEEEEEcccch-----hhhhccccCccccccCC--ccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCCC
Confidence 356899999976653 78899999999865432 4555543 4466799999999999998878999885 5555
Q ss_pred hHHHH--HHHhcCCCCccEEecccCCC-CccC-CCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHH
Q 002352 94 MQTNF--IIQLGNKSQVPILSFSATSP-SLTS-IRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIP 169 (932)
Q Consensus 94 ~~a~~--v~~~~~~~~iP~Is~~a~~~-~l~~-~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~ 169 (932)
..+.+ ++.+++.+++|+|+++++++ .|++ .++|||||+.|++..|+.++++++++|||++|++||+|+ ....
T Consensus 75 ~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~----~g~~ 150 (364)
T 3qel_B 75 QEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYF----PGYQ 150 (364)
T ss_dssp CTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESC----TTHH
T ss_pred chHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCC----ccHH
Confidence 44544 99999999999999999998 8887 569999999999999999999999999999999999984 2345
Q ss_pred HHHHHHHhC--C--ceeeeeeecCCCCChhHHHHHH-HHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEec
Q 002352 170 SLTDALQAI--D--TRVPYRSVISPLATDDQIEKEL-YKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTE 244 (932)
Q Consensus 170 ~l~~~l~~~--g--~~v~~~~~~~~~~~~~~~~~~l-~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~ 244 (932)
.|.+.+++. | +|+.+...++...+..++...+ ++|++++++|||++|+.+.+..++++|.+.||++++|+||+++
T Consensus 151 ~~~~~l~~~~~~~~ici~~~~~i~~~~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~wI~t~ 230 (364)
T 3qel_B 151 DFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPS 230 (364)
T ss_dssp HHHHHHHHHHHTCSSCCEEEEEEEECTTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEEECH
T ss_pred HHHHHHHHHhhccccceEEEEEEccCCCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEec
Confidence 666666654 4 4877776665554555677888 6899999999999999999999999999999999999999999
Q ss_pred ccchhcccCChhhhhhccceEEEeecCCCChhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHHHHHhccc
Q 002352 245 GMTNLLRTLEPSVIDSMQGVIGVRPYVPKTKAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEKAGIT 324 (932)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~Al~~~~~~ 324 (932)
.+....+... .+..+|+++++++. |++ .+.+++||||+++|+|++++...
T Consensus 231 ~~~~~~~~~~---~~~~~g~~~~~~~~------------W~~---------------~~~~~~yDaV~~~A~A~~~~~~~ 280 (364)
T 3qel_B 231 LVAGDTDTVP---SEFPTGLISVSYDE------------WDY---------------GLPARVRDGIAIITTAASDMLSE 280 (364)
T ss_dssp HHHCSTTCCC---TTSCTTCEECCBCT------------TTS---------------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCccccc---ccCCCceEEEeecc------------chh---------------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 8754443322 24578999988753 321 24678999999999999998754
Q ss_pred cccccccccCCCCCccccc--cccCChHHHHHHhhcceeeeeeeeEEee-CCccccccEEEEEee--cCeEEEEEEcCCC
Q 002352 325 SFGFDKTNVSSNATDLEAF--GISRNGPKLLQALSSTRFKGLTGDYVFV-DGQLQSSAFEIINVN--NGARGVGFWTPEK 399 (932)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~--~~~~~g~~l~~~L~~~~f~G~tG~~~f~-~g~~~~~~~~I~n~~--~g~~~vG~w~~~~ 399 (932)
...+.. ...+|... .+|..|..|+++|++++|+|+ ++.|+ +|+|.++.|+|+|++ +|+++||+|+. .
T Consensus 281 ~~~i~~-----~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~~~VG~W~~-~ 352 (364)
T 3qel_B 281 HSFIPE-----PKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKWERVGKWKD-K 352 (364)
T ss_dssp TSCCCC-----CCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCEEEEEEECS-S
T ss_pred cCCCCC-----CCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCcEEEEEECC-C
Confidence 322221 12344443 358899999999999999998 88997 999998999999998 57999999994 3
Q ss_pred CccccccCCCccCCCccceEeCC
Q 002352 400 GLTLKLRSNSTTKSKLRPIIWPG 422 (932)
Q Consensus 400 g~~~~~~~~~~~~~~~~~i~Wpg 422 (932)
++. .+.++||+
T Consensus 353 ~L~------------~~~~~Wp~ 363 (364)
T 3qel_B 353 SLQ------------MKYYVWPR 363 (364)
T ss_dssp CEE------------ESCSSCCC
T ss_pred eEE------------eCcCCCCC
Confidence 443 46789996
No 17
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=100.00 E-value=1.3e-39 Score=370.82 Aligned_cols=372 Identities=14% Similarity=0.081 Sum_probs=296.1
Q ss_pred CCCCCccEEEEEEEeCCCc---cchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCC-CCHHHHHHHHHHHHhcCCeEEE
Q 002352 12 SKNTTIPVNVGLVLDMNGE---DGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSK-GDVVAAAAAALDLLNNVLVQAI 87 (932)
Q Consensus 12 ~~~~~~~i~IG~i~~~s~~---~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~-~~~~~a~~~a~~li~~~~v~ai 87 (932)
++.+.++|+||+++|++|. .|.....|+++|++++|++|+++|++++++++|++ +++..++.++++|+.+++|.+|
T Consensus 8 ~a~~~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~ai 87 (419)
T 3h5l_A 8 QAQSSDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGILGRPIELVFADTQSKGVDVVIQSAQRLIDRDNASAL 87 (419)
T ss_dssp -----CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBTTBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEE
T ss_pred hhccCCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcCceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEE
Confidence 3446778999999999994 48889999999999999999999999999999987 6999999999999998899999
Q ss_pred EccCChhHHHHHHHhcCCCCccEEecccCCCCcc-----C-CCCCceEecccCchhHHHHHHHHHHHc--------CCeE
Q 002352 88 LGPEKSMQTNFIIQLGNKSQVPILSFSATSPSLT-----S-IRSSYFFRGSLNDSSQVGAITAIIKAF--------GWRE 153 (932)
Q Consensus 88 iGp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~-----~-~~~p~~~r~~ps~~~~~~ai~~~l~~~--------~w~~ 153 (932)
|||.+|..+.+++++++++++|+|++++ ++.+. + ..++|+||+.|++..++.+++++++++ +|++
T Consensus 88 iG~~~s~~~~a~~~~~~~~~ip~i~~~~-~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (419)
T 3h5l_A 88 IAGYNLENGTALHDVAADAGVIAMHANT-VAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNK 166 (419)
T ss_dssp ECSCCSSCSCHHHHHHHHHTCEEEECCC-CHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSE
T ss_pred EccccchhHHHhHHHHHHcCCeEEEcCc-chhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCE
Confidence 9999999999999999999999999643 33322 2 368999999999999999999999886 8999
Q ss_pred EEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeC-hhhHHHHHHHHHhCC
Q 002352 154 AVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML-PSLGSRIFEKANEIG 232 (932)
Q Consensus 154 v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~-~~~~~~l~~~a~~~g 232 (932)
|++|+++++||....+.|++.+++.|++|+....++. ++.|+..++.+|++.++|+|++.+. ++++..+++++++.|
T Consensus 167 vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~--~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~g 244 (419)
T 3h5l_A 167 IAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAI--PVSDWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFMTDP 244 (419)
T ss_dssp EEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCS--SCSCCHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHTTSC
T ss_pred EEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCC--CCccHHHHHHHHHhcCCCEEEEccccCchHHHHHHHHHHcC
Confidence 9999999999999999999999999999998887764 3467999999999999999999865 578999999999999
Q ss_pred ccccceEEEEecccchhcccCChhhhhhccceEEEeec-CCCChhHHHHHHHHHHhhhccCCCCCcccc-chhhHHHHHH
Q 002352 233 LMNKGCVWIMTEGMTNLLRTLEPSVIDSMQGVIGVRPY-VPKTKAFENFRVRWKRKFLQENPSLFDVEL-NILGLFAYDA 310 (932)
Q Consensus 233 ~~~~~~~wi~t~~~~~~~~~~~~~~~~~~~g~l~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~a~~~YDa 310 (932)
+. ..|+.++++... +. .....+..+|++....+ .+.++..++|.++|+++|+. .+ +.+++.+|||
T Consensus 245 ~~---~~~~~~~~~~~~-~~-~~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g~--------~p~~~~a~~~Yda 311 (419)
T 3h5l_A 245 TN---SLVYLQYGASLA-AF-RDIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERYGD--------LSSTASGCQTYSA 311 (419)
T ss_dssp CS---CEEEECSGGGSH-HH-HHHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHHCT--------TSCHHHHHHHHHH
T ss_pred CC---ceEEecCCCCcH-HH-HHhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHhCC--------CCCcchhHHHHHH
Confidence 83 347777776531 11 11233567888776554 34578899999999999987 44 4699999999
Q ss_pred HHHHHHHHHHhccccccccccccCCCCCccccccccCChHHHHHHhhcceeeeeeeeEEee-CCccc------------c
Q 002352 311 TRALAVAVEKAGITSFGFDKTNVSSNATDLEAFGISRNGPKLLQALSSTRFKGLTGDYVFV-DGQLQ------------S 377 (932)
Q Consensus 311 v~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~~f~-~g~~~------------~ 377 (932)
+++++.|++++++.. ..+.+.++..|.++|++++|+|++|.+.|+ +|++. .
T Consensus 312 ~~~~~~a~~~a~~~~----------------~~g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~~~~~~~ 375 (419)
T 3h5l_A 312 LYAYSIAAALAGGPG----------------APYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETNDPSLG 375 (419)
T ss_dssp HHHHHHHHHHTTSCC----------------CTTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCSCTTSS
T ss_pred HHHHHHHHHHhcCCc----------------cCCCccCHHHHHHHHHhCCcccCceEEEECCCCCccccccCccCCcccc
Confidence 999999999987531 112234689999999999999999999997 88742 2
Q ss_pred ccEEEEEeecC-eEEEEEEcCCCCccccccCCCccCCCccceEeCCCCCCCCC
Q 002352 378 SAFEIINVNNG-ARGVGFWTPEKGLTLKLRSNSTTKSKLRPIIWPGDSTSDPK 429 (932)
Q Consensus 378 ~~~~I~n~~~g-~~~vG~w~~~~g~~~~~~~~~~~~~~~~~i~Wpg~~~~~P~ 429 (932)
..+.|++|++| ++.+-.|.... ...+++||....+.|.
T Consensus 376 ~~~~i~q~q~g~~~~~~V~P~~~--------------a~~~~~~P~~~~~~~~ 414 (419)
T 3h5l_A 376 MPHIFSQIFDKAEDGVLIAPAPY--------------KKAGFKMPPWMKGEGH 414 (419)
T ss_dssp EECEEEECCCTTSCCEEEESTTS--------------CSSCCCCCTTC-----
T ss_pred CCceEEEeeCCceeeEEECCchh--------------hcCcccCCccccCCCc
Confidence 23567887744 52222354321 2355778877655543
No 18
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=100.00 E-value=1.6e-38 Score=357.81 Aligned_cols=350 Identities=16% Similarity=0.158 Sum_probs=300.2
Q ss_pred CCccEEEEEEEeCCC--ccchhHHHHHHHHHHHHhcCCCCCC-cEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccC
Q 002352 15 TTIPVNVGLVLDMNG--EDGKIALSCINMSLSDFYNSNSHYK-TRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPE 91 (932)
Q Consensus 15 ~~~~i~IG~i~~~s~--~~g~~~~~a~~lAv~~iN~~~~~~g-~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~ 91 (932)
..++|+||+++|++| .+|.....|+++|++++|++|+++| ++++++++|+++++..+++.+++|+.+++|.+||||.
T Consensus 2 s~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~ 81 (387)
T 3i45_A 2 SLEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGTF 81 (387)
T ss_dssp CCCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEECC
T ss_pred CCCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEECCc
Confidence 356899999999999 4577889999999999999999998 9999999999999999999999999977999999999
Q ss_pred ChhHHHHHHHhcCCCCccEEecccCCCCccC-CCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHH
Q 002352 92 KSMQTNFIIQLGNKSQVPILSFSATSPSLTS-IRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPS 170 (932)
Q Consensus 92 ~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~-~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~ 170 (932)
+|..+.+++++++..++|+|++.++++.++. ..+||+||+.|++..++.++++++.++||++|++|+.+++||....+.
T Consensus 82 ~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~ 161 (387)
T 3i45_A 82 LSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVAR 161 (387)
T ss_dssp SHHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHhHHHHHH
Confidence 9999999999999999999999988888874 568999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC--CceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecccc-
Q 002352 171 LTDALQAI--DTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMT- 247 (932)
Q Consensus 171 l~~~l~~~--g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~- 247 (932)
+++.+++. |++++....++.. ..|+...+.++++.++|+|++.+.+..+..+++++++.|+... +++.+....
T Consensus 162 ~~~~l~~~~~g~~vv~~~~~~~~--~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~--~~i~~~~~~~ 237 (387)
T 3i45_A 162 FKELLLAARPEVTFVAEQWPALY--KLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAG--RQVVSMLTGE 237 (387)
T ss_dssp HHHHHHHHCTTCEEEEEECCCTT--CCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSSTT--CEEEEEEEES
T ss_pred HHHHHHHhCCCcEEEeeecCCCC--CcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCCCCC--CeEEeecCCC
Confidence 99999998 8998877666533 4569999999999999999999999999999999999998543 344443321
Q ss_pred -hhcccCChhhhhhccceEEEe-ecC-CCChhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHHHHHhccc
Q 002352 248 -NLLRTLEPSVIDSMQGVIGVR-PYV-PKTKAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEKAGIT 324 (932)
Q Consensus 248 -~~~~~~~~~~~~~~~g~l~~~-~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~Al~~~~~~ 324 (932)
..+..+. .+..+|++... ++. .+++..++|.++|+++|+. .|+.+++.+|||++++++|++++++.
T Consensus 238 ~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--------~p~~~~~~~Yda~~~~a~Al~~ag~~ 306 (387)
T 3i45_A 238 PEYLNPLK---DEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWKE--------DPFVGSLVGYNTLTAMAVAFEKAGGT 306 (387)
T ss_dssp HHHHGGGG---GGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHHSS--------CCCHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHhh---hhccCceEEecccccCCCCHHHHHHHHHHHHHHCC--------CCCcHHHHHHHHHHHHHHHHHHhCCC
Confidence 2222111 13467877653 233 5789999999999999986 67889999999999999999998643
Q ss_pred cccccccccCCCCCccccccccCChHHHHHHhhcceeeeeeeeEEee-CCccccccEEEEEee--cCeEEEEEEcCCCCc
Q 002352 325 SFGFDKTNVSSNATDLEAFGISRNGPKLLQALSSTRFKGLTGDYVFV-DGQLQSSAFEIINVN--NGARGVGFWTPEKGL 401 (932)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~~f~-~g~~~~~~~~I~n~~--~g~~~vG~w~~~~g~ 401 (932)
++..|.++|++++|+|++|++.|+ ++++......|.+++ +|.+.++.|.+..|.
T Consensus 307 -----------------------~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~~~i~~w~~~~~~ 363 (387)
T 3i45_A 307 -----------------------ESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGKGVMVDWRYVDGG 363 (387)
T ss_dssp -----------------------CHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTEEEEEEEEEECGG
T ss_pred -----------------------CHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCceeEEeeEEeCch
Confidence 589999999999999999999997 444456778888876 678999999887665
Q ss_pred c
Q 002352 402 T 402 (932)
Q Consensus 402 ~ 402 (932)
.
T Consensus 364 ~ 364 (387)
T 3i45_A 364 S 364 (387)
T ss_dssp G
T ss_pred h
Confidence 3
No 19
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=100.00 E-value=3e-38 Score=353.02 Aligned_cols=347 Identities=15% Similarity=0.163 Sum_probs=293.7
Q ss_pred CCccEEEEEEEeCCC---ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCC-CHHHHHHHHHHHHhcCCeEEEEcc
Q 002352 15 TTIPVNVGLVLDMNG---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKG-DVVAAAAAALDLLNNVLVQAILGP 90 (932)
Q Consensus 15 ~~~~i~IG~i~~~s~---~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~-~~~~a~~~a~~li~~~~v~aiiGp 90 (932)
++++||||+++|+|| ..|.....|+++|++++| +++.|++|+++++|+++ +|..++.++.+|+.+++|.+||||
T Consensus 2 ~Ad~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~n--ggi~G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG~ 79 (371)
T 4f06_A 2 NADTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHG--NKVAGHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAGL 79 (371)
T ss_dssp --CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHC--SEETTEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhC--CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 467899999999999 457889999999999998 67889999999999986 899999999999999999999999
Q ss_pred CChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHH
Q 002352 91 EKSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPS 170 (932)
Q Consensus 91 ~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~ 170 (932)
.+|..+.++++++++.++|+|+++++++.++.. .||+||+.+++..++.+++++++..+|++|++|+.|++||.+..+.
T Consensus 80 ~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~~ 158 (371)
T 4f06_A 80 YFTPNAMAVAPLLQEAKVPMVVMNAATSSITEK-SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDAETA 158 (371)
T ss_dssp CSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred ccccchHHHHHHHHhhcCCccccccccchhccc-CCcceecccchhhhhhhhhhhhhhcCceEEEEEcCCcccchhHHHH
Confidence 999999999999999999999999998888654 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeC-hhhHHHHHHHHHhCCccccceEEEEecccchh
Q 002352 171 LTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML-PSLGSRIFEKANEIGLMNKGCVWIMTEGMTNL 249 (932)
Q Consensus 171 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~-~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~~~ 249 (932)
+++.+++.|++|+....++.+ +.|+..++.+|++.++|+|++.+. +..+..+++++++.|+...++.++.+......
T Consensus 159 ~~~~~~~~g~~vv~~~~~~~~--~~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 236 (371)
T 4f06_A 159 FKKTFEAEGGKVVEAVRMPLS--TTDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMSTGDVVTE 236 (371)
T ss_dssp HHHHHHHTTCEEEEEEEECTT--CCCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEEGGGGCG
T ss_pred HHHHHHhcCCceEEEEecCcc--cccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEecccCCH
Confidence 999999999999998888744 456999999999999999988775 46788899999999998777777766543321
Q ss_pred cccCChhhhhhccceEEEeecCC--CChhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHHHHHhcccccc
Q 002352 250 LRTLEPSVIDSMQGVIGVRPYVP--KTKAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEKAGITSFG 327 (932)
Q Consensus 250 ~~~~~~~~~~~~~g~l~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~Al~~~~~~~~~ 327 (932)
.. + ....+...|++...++.+ ++|..++|+++|+++++... .++.+++.+||++++++.|+++....
T Consensus 237 ~~-~-~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~------~~~~~a~~~Yda~~~l~~Ai~~~ag~--- 305 (371)
T 4f06_A 237 PD-L-PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAKLD------EVTMTSVAAYDGARLIYKMIEATSGK--- 305 (371)
T ss_dssp GG-H-HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCCGG------GCCHHHHHHHHHHHHHHHHHHHTTTS---
T ss_pred HH-H-HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCCCC------CccchHHHHHHHHHHHHHHHHHhcCC---
Confidence 11 1 123456778888777654 47889999999999887421 57889999999999999999874321
Q ss_pred ccccccCCCCCccccccccCChHHHHHHhhcceeeeeeeeEEee-CCccccccEEEEEee--cC---eEEEEEEc
Q 002352 328 FDKTNVSSNATDLEAFGISRNGPKLLQALSSTRFKGLTGDYVFV-DGQLQSSAFEIINVN--NG---ARGVGFWT 396 (932)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~~f~-~g~~~~~~~~I~n~~--~g---~~~vG~w~ 396 (932)
.+++++.++|++++|+|++|++.|+ +++.....+.|.+++ +| ++.++.+.
T Consensus 306 -------------------~d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~~~dGk~v~~~~~~~~ 361 (371)
T 4f06_A 306 -------------------SDPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVEKVDGKLINRELETFK 361 (371)
T ss_dssp -------------------CCHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred -------------------CCHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEEecCCEEEEEEEEEEe
Confidence 2689999999999999999999997 666556778888887 56 34444443
No 20
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=3.5e-37 Score=344.20 Aligned_cols=340 Identities=19% Similarity=0.259 Sum_probs=296.5
Q ss_pred CccEEEEEEEeCCC---ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCC
Q 002352 16 TIPVNVGLVLDMNG---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEK 92 (932)
Q Consensus 16 ~~~i~IG~i~~~s~---~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~ 92 (932)
+.+++||+++|++| ..|.....|+++|++++|+ ++|++++++++|+++++..+.+.+.+|+.+++|.+||||.+
T Consensus 14 ~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~---i~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG~~~ 90 (366)
T 3td9_A 14 RKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT---VLGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGEVA 90 (366)
T ss_dssp --CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE---ETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSS
T ss_pred cceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh---cCCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEccCC
Confidence 56799999999999 4578899999999999998 66899999999999999999999999999878999999999
Q ss_pred hhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHH-HHcCCeEEEEEEE-cCCcCCChHHH
Q 002352 93 SMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAII-KAFGWREAVPIYV-DNQYGEEMIPS 170 (932)
Q Consensus 93 s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l-~~~~w~~v~ii~~-d~~~g~~~~~~ 170 (932)
+..+.+++.+++++++|+|++.++++.++. .+||+||+.|++..++.++++++ +++||++|++||. +++||....+.
T Consensus 91 s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~ 169 (366)
T 3td9_A 91 SAHSLAIAPIAEENKVPMVTPASTNPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGLSNF 169 (366)
T ss_dssp HHHHHHHHHHHHHTTCCEEESSCCCGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHHHHHHHH
T ss_pred chhHHHHHHHHHhCCCeEEecCCCCccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHHHHH
Confidence 999999999999999999999988887754 57999999999999999999999 5689999999987 78899999999
Q ss_pred HHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecccchhc
Q 002352 171 LTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTNLL 250 (932)
Q Consensus 171 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~~~~ 250 (932)
+.+++++.|++++... ++. +..++...+.++++.++++|++.+....+..+++++++.|+..+ |+.++++...
T Consensus 170 ~~~~~~~~G~~v~~~~-~~~--~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~- 242 (366)
T 3td9_A 170 FINKFTELGGQVKRVF-FRS--GDQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFTGY---ILAGDGADAP- 242 (366)
T ss_dssp HHHHHHHTTCEEEEEE-ECT--TCCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCCSE---EEECGGGCST-
T ss_pred HHHHHHHCCCEEEEEE-eCC--CCccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCCce---EEeeCCcCCH-
Confidence 9999999999998776 654 34568889999999999999999999999999999999999765 7777766431
Q ss_pred ccCChhhhhhccceEEEeecCCC---ChhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHHHHHhcccccc
Q 002352 251 RTLEPSVIDSMQGVIGVRPYVPK---TKAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEKAGITSFG 327 (932)
Q Consensus 251 ~~~~~~~~~~~~g~l~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~Al~~~~~~~~~ 327 (932)
. ......+..+|++....+.+. .+..++|.++|+++|+. .|+.+++.+|||++++++|++++++.
T Consensus 243 ~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~--------~p~~~~~~~yda~~~~~~al~~ag~~--- 310 (366)
T 3td9_A 243 E-LIEIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKYGK--------EPAALNALGYDAYMVLLDAIERAGSF--- 310 (366)
T ss_dssp H-HHHHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHHSS--------CCCHHHHHHHHHHHHHHHHHHHHTSC---
T ss_pred H-HHHHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHCC--------CCchhHHHHHHHHHHHHHHHHHhCCC---
Confidence 1 111234567899888876554 67899999999999987 67899999999999999999998743
Q ss_pred ccccccCCCCCccccccccCChHHHHHHhhcce-eeeeeeeEEee-CCccccccEEEEEeec-CeEEEEEEcCCC
Q 002352 328 FDKTNVSSNATDLEAFGISRNGPKLLQALSSTR-FKGLTGDYVFV-DGQLQSSAFEIINVNN-GARGVGFWTPEK 399 (932)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~-f~G~tG~~~f~-~g~~~~~~~~I~n~~~-g~~~vG~w~~~~ 399 (932)
++..|.++|++++ |+|++|++.|+ +|++. ..+.|+++++ +++.|+.|+++.
T Consensus 311 --------------------~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~~~ 364 (366)
T 3td9_A 311 --------------------DREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKNGSVDFEAVINPDD 364 (366)
T ss_dssp --------------------CHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEETTEEEEEEEECGGG
T ss_pred --------------------CHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEECCEEEEEEecChhh
Confidence 6899999999998 99999999997 89876 4599999994 499999999753
No 21
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=100.00 E-value=3.1e-37 Score=342.77 Aligned_cols=336 Identities=18% Similarity=0.273 Sum_probs=277.9
Q ss_pred CCCccEEEEEEEeCCC---ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcc
Q 002352 14 NTTIPVNVGLVLDMNG---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGP 90 (932)
Q Consensus 14 ~~~~~i~IG~i~~~s~---~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp 90 (932)
.+.++||||+++|+|| ..|.....|+++|++++|++||++|++|+++++|++++|..+++++.+|+.+++|.+|+||
T Consensus 3 ~~~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~Gr~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g~ 82 (353)
T 4gnr_A 3 VEEKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDGKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVGP 82 (353)
T ss_dssp ---CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECC
T ss_pred CCCCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEecc
Confidence 4577899999999999 4588899999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCC-eEEEEEEEc-CCcCCChH
Q 002352 91 EKSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGW-REAVPIYVD-NQYGEEMI 168 (932)
Q Consensus 91 ~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w-~~v~ii~~d-~~~g~~~~ 168 (932)
.+|..+.+++++++++++|+|+++++++.++. ..+|+||+.|++..++.+++.++...++ +++++++.+ ++||.+..
T Consensus 83 ~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~ 161 (353)
T 4gnr_A 83 ATSGATAAAVANATKAGVPLISPSATQDGLTK-GQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGIA 161 (353)
T ss_dssp CSHHHHHHHHHHHHHTTCCEEESSCCCTTTTT-TCTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHHH
T ss_pred ccCcccceehhhhhccCcceEeeccccccccc-CCccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHHHHHH
Confidence 99999999999999999999999998888864 3689999999999999999999976554 555555554 45777666
Q ss_pred HHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecccch
Q 002352 169 PSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTN 248 (932)
Q Consensus 169 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~~ 248 (932)
+.+.+ ..|.+++....++.. +.|+..++.++++.++|+|++.+.+.++..++++++++|+..+ |+.++++..
T Consensus 162 ~~~~~---~~g~~vv~~~~~~~~--~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~ 233 (353)
T 4gnr_A 162 KSFRE---SYKGEIVADETFVAG--DTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKP---IVGGDGFNG 233 (353)
T ss_dssp HHHHH---HCCSEEEEEEEECTT--CCCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCSC---EEECGGGCS
T ss_pred HHHHH---HcCCEEEEEEeeCCC--CCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCCc---EEEeccccc
Confidence 55543 457888888887644 4569999999999999999999999999999999999999877 677665543
Q ss_pred hcccCChhhhhhccceEEEeecCC---CChhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHHHHHhcccc
Q 002352 249 LLRTLEPSVIDSMQGVIGVRPYVP---KTKAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEKAGITS 325 (932)
Q Consensus 249 ~~~~~~~~~~~~~~g~l~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~Al~~~~~~~ 325 (932)
... ......+...|.+....+.+ .++..++|.++|+++|+. .|+.+++.+|||++++++|++++.
T Consensus 234 ~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~--------~p~~~a~~~Yda~~~la~Ai~~a~--- 301 (353)
T 4gnr_A 234 EEF-VQQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKYNE--------EPSTFAALAYDSVHLVANAAKGAK--- 301 (353)
T ss_dssp HHH-HHHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHHSS--------CCCHHHHHHHHHHHHHHHHHTTCS---
T ss_pred chh-hhhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHhCC--------CCChhHHHHHHHHHHHHHHHhcCC---
Confidence 110 00111245677777665543 367899999999999987 788999999999999999998653
Q ss_pred ccccccccCCCCCccccccccCChHHHHHHhhcc-eeeeeeeeEEee-CCccccccEEEEEeecC-eEEEE
Q 002352 326 FGFDKTNVSSNATDLEAFGISRNGPKLLQALSST-RFKGLTGDYVFV-DGQLQSSAFEIINVNNG-ARGVG 393 (932)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~-~f~G~tG~~~f~-~g~~~~~~~~I~n~~~g-~~~vG 393 (932)
++..+.++|+++ .|+|++|++.|+ +|++. ..+.|++++|| ++.+.
T Consensus 302 ----------------------~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~v~~Gk~~~~~ 349 (353)
T 4gnr_A 302 ----------------------NSGEIKDNLAXTKDFEGVTGQTSFDADHNTV-KTAYMMTMNNGKVEAAE 349 (353)
T ss_dssp ----------------------SHHHHHHHHHTCCCEEETTEEECCCTTSCCC-CCEEEEEEETTEEEEEE
T ss_pred ----------------------CHHHHHHHHHhcCCCccCceeEEECCCcCCc-CCeEEEEEECCEEEEEE
Confidence 467899999988 599999999997 88864 56778888866 55553
No 22
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=100.00 E-value=1.2e-36 Score=340.97 Aligned_cols=331 Identities=15% Similarity=0.182 Sum_probs=290.5
Q ss_pred CccEEEEEEEeCCCc---c-chhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccC
Q 002352 16 TIPVNVGLVLDMNGE---D-GKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPE 91 (932)
Q Consensus 16 ~~~i~IG~i~~~s~~---~-g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~ 91 (932)
.++|+||+++|++|. . |.....|+++|++++ .++++|++++++++|+++++..+.+.+++|+.+++|.+||||.
T Consensus 2 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~--~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~~ 79 (375)
T 3i09_A 2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADF--GGKVNGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGGT 79 (375)
T ss_dssp CSSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHH--TSEETTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEECS
T ss_pred CCCeEEEEEeCCCcccccccCHHHHHHHHHHHHHh--CCCCCCeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECCC
Confidence 468999999999984 3 777999999999999 4677899999999999999999999999999977999999999
Q ss_pred ChhHHHHHHHhcCCCCccEEecccCCCCccC-CCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHH
Q 002352 92 KSMQTNFIIQLGNKSQVPILSFSATSPSLTS-IRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPS 170 (932)
Q Consensus 92 ~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~-~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~ 170 (932)
+|..+.+++++++++++|+|+++++++.++. ..+||+||+.+++..++.++++++.++||++|++|+.++++|....+.
T Consensus 80 ~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~ 159 (375)
T 3i09_A 80 NSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEKN 159 (375)
T ss_dssp CHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecccHHHHHHHHH
Confidence 9999999999999999999999988888876 468999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecccchhc
Q 002352 171 LTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTNLL 250 (932)
Q Consensus 171 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~~~~ 250 (932)
+++.+++.|++|+....++.. ..|+...+.++++.++|+|++.+....+..+++++++.|+..+. .++..+.+...+
T Consensus 160 ~~~~~~~~G~~v~~~~~~~~~--~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~i~g~~~~~~~~ 236 (375)
T 3i09_A 160 TADVVKANGGKVLGEVRHPLS--ASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTM-KLAALLMFINDV 236 (375)
T ss_dssp HHHHHHHTTCEEEEEEEECTT--CSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTC-EEEESSCCHHHH
T ss_pred HHHHHHHcCCEEeeeeeCCCC--CccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcCc-eEEecccchhhH
Confidence 999999999999887777643 45688999999999999999999999999999999999998876 445444443322
Q ss_pred ccCChhhhhhccceEEEeecCCC-ChhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHHHHHhcccccccc
Q 002352 251 RTLEPSVIDSMQGVIGVRPYVPK-TKAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEKAGITSFGFD 329 (932)
Q Consensus 251 ~~~~~~~~~~~~g~l~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~Al~~~~~~~~~~~ 329 (932)
..+ ..+..+|++...++.++ ++..++|.++|+++|+. .|+.+++.+|||++++++|++++++.
T Consensus 237 ~~~---~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g~--------~p~~~a~~~Yda~~~~~~Al~~ag~~----- 300 (375)
T 3i09_A 237 HAL---GLETTQGLVLTDSWYWNRDQASRQWAQRYFAKMKK--------MPSSLQAADYSSVTTYLKAVQAAGST----- 300 (375)
T ss_dssp HHH---CHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHSS--------CCCHHHHHHHHHHHHHHHHHHHHTSC-----
T ss_pred hhh---ChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHHCC--------CCcHHHHHHHHHHHHHHHHHHHhCCC-----
Confidence 111 12467898887776554 68899999999999987 78899999999999999999998743
Q ss_pred ccccCCCCCccccccccCChHHHHHHhhcceeeeeeeeEEee-CCccccccEEEEEee
Q 002352 330 KTNVSSNATDLEAFGISRNGPKLLQALSSTRFKGLTGDYVFV-DGQLQSSAFEIINVN 386 (932)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~~f~-~g~~~~~~~~I~n~~ 386 (932)
++..|.++|++++|+|++|.+.|+ +|++. ..+.|++++
T Consensus 301 ------------------~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~-~~~~i~~v~ 339 (375)
T 3i09_A 301 ------------------DSDKVMAQLKKMKIDDFYAKGYIRTDGSMI-HDMYLMEVK 339 (375)
T ss_dssp ------------------CHHHHHHHHTTSCEESSSCEEEECTTSBEE-CCEEEEEEC
T ss_pred ------------------CHHHHHHHHhCCCccCCCCceEECCCCCee-eeeEEEEEe
Confidence 579999999999999999999997 89875 578899887
No 23
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=100.00 E-value=4.8e-37 Score=341.72 Aligned_cols=342 Identities=15% Similarity=0.145 Sum_probs=296.7
Q ss_pred ccEEEEEEEeCCCc---cchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCCh
Q 002352 17 IPVNVGLVLDMNGE---DGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKS 93 (932)
Q Consensus 17 ~~i~IG~i~~~s~~---~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s 93 (932)
.+|+||+++|++|. +|.....|+++|++++|+++++.|++++++++|+++++..+.+.+++|+. ++|.+||||.++
T Consensus 1 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~~-~~v~~iig~~~s 79 (356)
T 3ipc_A 1 MDVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQGISVANKFVA-DGVKFVVGHANS 79 (356)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBCEEEEEEECTTCHHHHHHHHHHHHH-TTCCEEEECSSH
T ss_pred CeEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHHHHHHHH-CCCcEEEcCCCc
Confidence 36999999999984 57889999999999999999999999999999999999999999999999 599999999999
Q ss_pred hHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHH-HHcCCeEEEEEEEcCCcCCChHHHHH
Q 002352 94 MQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAII-KAFGWREAVPIYVDNQYGEEMIPSLT 172 (932)
Q Consensus 94 ~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l-~~~~w~~v~ii~~d~~~g~~~~~~l~ 172 (932)
..+.+++.+++..++|+|++.++++.+++..+|++||+.|++..++.++++++ +++||++|++|+.++++|....+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~ 159 (356)
T 3ipc_A 80 GVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETK 159 (356)
T ss_dssp HHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHH
Confidence 99999999999999999999998888887778999999999999999999976 55799999999999999999999999
Q ss_pred HHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecccchhccc
Q 002352 173 DALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTNLLRT 252 (932)
Q Consensus 173 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~~~~~~ 252 (932)
+++++.|++++....++. +..++...+.++++.++++|++.+....+..+++++++.|+..+ |+.++++... ..
T Consensus 160 ~~l~~~g~~v~~~~~~~~--~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~-~~ 233 (356)
T 3ipc_A 160 KAANAAGVTEVMYEGVNV--GDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKAK---LVSGDGIVSN-EL 233 (356)
T ss_dssp HHHHHTTCCCSEEEECCT--TCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCCE---EEECGGGCSH-HH
T ss_pred HHHHHcCCEEEEEEeeCC--CCCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCCc---EEEeccccCH-HH
Confidence 999999999887766653 34568889999999999999999999999999999999999766 7777665431 11
Q ss_pred CChhhhhhccceEEEeecCC-CChhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHHHHHhcccccccccc
Q 002352 253 LEPSVIDSMQGVIGVRPYVP-KTKAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEKAGITSFGFDKT 331 (932)
Q Consensus 253 ~~~~~~~~~~g~l~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~Al~~~~~~~~~~~~~ 331 (932)
. .......+|++...++.+ ..+..++|.++|+++ +. .|+.+++.+|||++++++|++++++.
T Consensus 234 ~-~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~~--------~p~~~~~~~yda~~~~~~al~~ag~~------- 296 (356)
T 3ipc_A 234 A-SIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA-GF--------NPEAYTLYSYAAMQAIAGAAKAAGSV------- 296 (356)
T ss_dssp H-HHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-TC--------CCCTTHHHHHHHHHHHHHHHHHHTCC-------
T ss_pred H-HHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-CC--------CcchhHHHHHHHHHHHHHHHHHhCCC-------
Confidence 0 123345788887776654 478899999999998 65 57789999999999999999998642
Q ss_pred ccCCCCCccccccccCChHHHHHHhhcceeeeeeeeEEee-CCccccccEEEEEee-c--C-eEEEEEEcCC
Q 002352 332 NVSSNATDLEAFGISRNGPKLLQALSSTRFKGLTGDYVFV-DGQLQSSAFEIINVN-N--G-ARGVGFWTPE 398 (932)
Q Consensus 332 ~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~~f~-~g~~~~~~~~I~n~~-~--g-~~~vG~w~~~ 398 (932)
++..|.++|++.+|+|++|++.|+ +|++....+.|++++ + | |+.+..|.+.
T Consensus 297 ----------------~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~ 352 (356)
T 3ipc_A 297 ----------------EPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSHH 352 (356)
T ss_dssp ----------------CHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC----
T ss_pred ----------------CHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEeccccc
Confidence 589999999999999999999997 899877889999998 5 7 8888777653
No 24
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=100.00 E-value=2.9e-36 Score=335.75 Aligned_cols=343 Identities=17% Similarity=0.185 Sum_probs=295.7
Q ss_pred CccEEEEEEEeCCCc---cchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCC
Q 002352 16 TIPVNVGLVLDMNGE---DGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEK 92 (932)
Q Consensus 16 ~~~i~IG~i~~~s~~---~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~ 92 (932)
.++|+||+++|++|. +|.....|+++|++++|++++++|+++++++.|+++++..+.+.+.+|+.+++|.+||||.+
T Consensus 2 ~~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 81 (358)
T 3hut_A 2 SLALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDFS 81 (358)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECSS
T ss_pred CccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCCC
Confidence 467999999999984 57889999999999999999999999999999999999999999999997779999999999
Q ss_pred hhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHH
Q 002352 93 SMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLT 172 (932)
Q Consensus 93 s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~ 172 (932)
+..+.+++.+++..++|+|++.++++.++... |++||+.|++..++.++++++...||++|++|+.++.+|....+.++
T Consensus 82 s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~ 160 (358)
T 3hut_A 82 STVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAFR 160 (358)
T ss_dssp HHHHHHHHHHHHHHTCCEEESSCCCGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCcEEecCCCCcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHHH
Confidence 99999999999999999999988888777544 99999999999999999999988899999999999999999999999
Q ss_pred HHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecccchhccc
Q 002352 173 DALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTNLLRT 252 (932)
Q Consensus 173 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~~~~~~ 252 (932)
+++++.|+++.....++. +..++...+.++++.++++|++.++...+..+++++++.|+..+ |+.++++... ..
T Consensus 161 ~~l~~~g~~v~~~~~~~~--~~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~p---~~~~~~~~~~-~~ 234 (358)
T 3hut_A 161 KAFELRGGAVVVNEEVPP--GNRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSALP---VYGSSALYSP-KF 234 (358)
T ss_dssp HHHHHTTCEEEEEEEECT--TCCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCCCC---EEECGGGCSH-HH
T ss_pred HHHHHcCCEEEEEEecCC--CCccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCCCc---EEecCcccCH-HH
Confidence 999999999987766653 34568888999998999999999999899999999999999776 8887766421 11
Q ss_pred CChhhhhhccceEEEeecCC--CChhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHHHHHhccccccccc
Q 002352 253 LEPSVIDSMQGVIGVRPYVP--KTKAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEKAGITSFGFDK 330 (932)
Q Consensus 253 ~~~~~~~~~~g~l~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~Al~~~~~~~~~~~~ 330 (932)
. ....+..+|++...++.+ ..+..++|.++|+++|+. .|+.+++.+|||+++++.|++++++.
T Consensus 235 ~-~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--------~p~~~~~~~yda~~~~~~al~~ag~~------ 299 (358)
T 3hut_A 235 I-DLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLYGA--------IPTLFAAHGYDAVGIMLAAVGRAGPE------ 299 (358)
T ss_dssp H-HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHSS--------CCCHHHHHHHHHHHHHHHHHHHHCTT------
T ss_pred H-HHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHHCC--------CCCHHHHHHHHHHHHHHHHHHHhCCC------
Confidence 1 123356889988887765 478899999999999987 68899999999999999999998743
Q ss_pred cccCCCCCccccccccCChHH-HHHHhhcc-eeeeeeeeEEee-CCccccccEEEEEeecC-eEEEEEEcC
Q 002352 331 TNVSSNATDLEAFGISRNGPK-LLQALSST-RFKGLTGDYVFV-DGQLQSSAFEIINVNNG-ARGVGFWTP 397 (932)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~g~~-l~~~L~~~-~f~G~tG~~~f~-~g~~~~~~~~I~n~~~g-~~~vG~w~~ 397 (932)
++.+ +.++|+++ +|+|++|++.|+ +|++....+.|+++++| ++.+....+
T Consensus 300 -----------------~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~~~~~~~~~~ 353 (358)
T 3hut_A 300 -----------------VTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVIDREGH 353 (358)
T ss_dssp -----------------CCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTEEEEC-----
T ss_pred -----------------ChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCEEEEeccccc
Confidence 4577 99999999 899999999997 88875678999999855 666654443
No 25
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=100.00 E-value=7.2e-36 Score=334.83 Aligned_cols=347 Identities=14% Similarity=0.164 Sum_probs=297.0
Q ss_pred cCCCCCccEEEEEEEeCCC---ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEE
Q 002352 11 TSKNTTIPVNVGLVLDMNG---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAI 87 (932)
Q Consensus 11 ~~~~~~~~i~IG~i~~~s~---~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~ai 87 (932)
.+.++.++|+||+++|++| .+|.....|+++|++++| +++.|++++++++|+++++..+.+.+.+|+.+++|.+|
T Consensus 9 ~~~a~~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~n--g~~~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~i 86 (375)
T 4evq_A 9 PSYAQAGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQG--GKLGGRSISFVKVDDESAPPKATELTTKLIQSEKADVL 86 (375)
T ss_dssp ------CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTT--TEETTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEE
T ss_pred cchhhCCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhC--CCcCCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEE
Confidence 3445667899999999998 457789999999999998 56779999999999999999999999999987799999
Q ss_pred EccCChhHHHHHHHhcCCCCccEEecccCCCCccCC-CCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCC
Q 002352 88 LGPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTSI-RSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEE 166 (932)
Q Consensus 88 iGp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~-~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~ 166 (932)
|||.++..+.+++.+++..++|+|++.++++.+.+. .+|++||+.+++..++.++++++.++||++|++|+.++.+|..
T Consensus 87 ig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~ 166 (375)
T 4evq_A 87 IGTVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEE 166 (375)
T ss_dssp EECSSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHH
T ss_pred EcCCccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecCchHHHH
Confidence 999999999999999999999999999988888763 4899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEeccc
Q 002352 167 MIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGM 246 (932)
Q Consensus 167 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~ 246 (932)
..+.+++++++.|++++....++.. ..++...++++++.++++|++.++...+..+++++++.|+..+ |+.++ +
T Consensus 167 ~~~~~~~~l~~~G~~v~~~~~~~~~--~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~vp---~~~~~-~ 240 (375)
T 4evq_A 167 MVSGFKKSFTAGKGEVVKDITIAFP--DVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGIP---LWGPG-F 240 (375)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECTT--CCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCCCC---EEEEG-G
T ss_pred HHHHHHHHHHHcCCeEEEEEecCCC--CccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---EEecC-c
Confidence 9999999999999999877666533 4468888999998999999999999999999999999999765 66554 4
Q ss_pred chhcccCChhhhhhccceEEEeecCC--CChhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHHHHHhccc
Q 002352 247 TNLLRTLEPSVIDSMQGVIGVRPYVP--KTKAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEKAGIT 324 (932)
Q Consensus 247 ~~~~~~~~~~~~~~~~g~l~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~Al~~~~~~ 324 (932)
.. .... ....+..+|++...++.+ +.+..++|.++|+++|+. .|+.+++.+|||++++++|+++++..
T Consensus 241 ~~-~~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--------~p~~~~~~~yda~~~~~~al~~~g~~ 310 (375)
T 4evq_A 241 LT-DGVE-AAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAYKI--------PPDVFAVQGWDAGQLLDAGVKAVGGD 310 (375)
T ss_dssp GT-TTTH-HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHSS--------CCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CC-HHHH-HhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHHCC--------CCcHHHHHHHHHHHHHHHHHHHhCCC
Confidence 21 1111 123456889998877755 368899999999999987 78899999999999999999998642
Q ss_pred cccccccccCCCCCccccccccCChHHHHHHhhcceeeeeeeeEEee-CCccccccEEEEEee-cCeEEEEEEcC
Q 002352 325 SFGFDKTNVSSNATDLEAFGISRNGPKLLQALSSTRFKGLTGDYVFV-DGQLQSSAFEIINVN-NGARGVGFWTP 397 (932)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~~f~-~g~~~~~~~~I~n~~-~g~~~vG~w~~ 397 (932)
+.++..|.++|++++|+|++|++.|+ +|++. ..+.|++++ ++++.|+.+.+
T Consensus 311 ---------------------~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~ 363 (375)
T 4evq_A 311 ---------------------VAKRKELNAAMAAASFASPRGPFKLSAAHNPV-QNFYLRELKGGKSVNLGLAAP 363 (375)
T ss_dssp ---------------------TTCHHHHHHHHHTCEEEETTEEEEBCTTSCBC-CCEEEEEEETTEEEEEEEEEC
T ss_pred ---------------------CCCHHHHHHHHhcCCcccCCcceeECCCCCcc-ccEEEEEEECCCcEEeeehhh
Confidence 23689999999999999999999997 88874 589999999 55898988754
No 26
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=100.00 E-value=2.9e-36 Score=338.41 Aligned_cols=332 Identities=16% Similarity=0.124 Sum_probs=287.4
Q ss_pred CCccEEEEEEEeCCCc---c-chhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcc
Q 002352 15 TTIPVNVGLVLDMNGE---D-GKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGP 90 (932)
Q Consensus 15 ~~~~i~IG~i~~~s~~---~-g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp 90 (932)
+.++|+||+++|++|. . |.....|+++|++++ +++++|++++++++|+++++..+++.+++|+.+++|.+||||
T Consensus 3 ~~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i--~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~ 80 (379)
T 3n0w_A 3 STGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDV--GGKALGQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFDV 80 (379)
T ss_dssp ---CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHT--TTEETTEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred CCCcEEEEEEeCCccccccccCHHHHHHHHHHHHHh--cCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 4568999999999983 3 778999999999999 467789999999999999999999999999997799999999
Q ss_pred CChhHHHHHHHhcCCCCccEEecccCCCCccC-CCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHH
Q 002352 91 EKSMQTNFIIQLGNKSQVPILSFSATSPSLTS-IRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIP 169 (932)
Q Consensus 91 ~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~-~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~ 169 (932)
.+|..+.+++++++++++|+|++.++++.++. ..+||+||+.+++..++.++++++.++||++|++|+.++++|....+
T Consensus 81 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~ 160 (379)
T 3n0w_A 81 VNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMNA 160 (379)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecccchhHHHHH
Confidence 99999999999999999999999988888876 45899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecccc-h
Q 002352 170 SLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMT-N 248 (932)
Q Consensus 170 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~-~ 248 (932)
.+++.+++.|++|+....++.. ..|+...+.++++.++|+|++.+.+..+..+++++++.|+..+.+ ++.+..+. .
T Consensus 161 ~~~~~~~~~G~~v~~~~~~~~~--~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~ 237 (379)
T 3n0w_A 161 AIRRELTAGGGQIVGSVRFPFE--TQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKTQ-KVGGMIDILT 237 (379)
T ss_dssp HHHHHHHHHTCEEEEEEEECTT--CCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSSC-EEECCBCCHH
T ss_pred HHHHHHHHcCCEEEEEEeCCCC--CCCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCCCCc-EEEecccchH
Confidence 9999999999999888777644 456889999999999999999999999999999999999987654 44444332 2
Q ss_pred hcccCChhhhhhccceEEEeecCCC-ChhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHHHHHhcccccc
Q 002352 249 LLRTLEPSVIDSMQGVIGVRPYVPK-TKAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEKAGITSFG 327 (932)
Q Consensus 249 ~~~~~~~~~~~~~~g~l~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~Al~~~~~~~~~ 327 (932)
.+..+ ..+..+|++...++.++ ++..++|.++|+++|+. .|+.+++.+|||++++++|++++++.
T Consensus 238 ~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g~--------~p~~~~~~~Yda~~~~~~Al~~ag~~--- 303 (379)
T 3n0w_A 238 DVKSA---GLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKMGK--------MPTNNQAGGYSAALQYLKAVNAIGSK--- 303 (379)
T ss_dssp HHHHH---CHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHSS--------CCCHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHhh---CHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHHCC--------CCChHHHHHHHHHHHHHHHHHHhCCC---
Confidence 22111 12467898887776554 68899999999999987 68899999999999999999998743
Q ss_pred ccccccCCCCCccccccccCChHHHHHHhhcceeeeeeee-EEee-CCccccccEEEEEee
Q 002352 328 FDKTNVSSNATDLEAFGISRNGPKLLQALSSTRFKGLTGD-YVFV-DGQLQSSAFEIINVN 386 (932)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~-~~f~-~g~~~~~~~~I~n~~ 386 (932)
++..|.++|++++|+|+.|. +.|+ +|++. ..+.|++++
T Consensus 304 --------------------~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~~-~~~~i~~~~ 343 (379)
T 3n0w_A 304 --------------------DPQKVFAYLKTIKFDDAVTRHGTLRPGGRLV-RDMYLVRAK 343 (379)
T ss_dssp --------------------CHHHHHHHHTTCCBCSSSCCSBEECTTSBEE-CCEEEEEEC
T ss_pred --------------------CHHHHHHHHhcCCccccCCCceeECCCCCcc-cceEEEEEE
Confidence 68999999999999999886 8897 88864 678899987
No 27
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=100.00 E-value=2.7e-36 Score=337.77 Aligned_cols=332 Identities=15% Similarity=0.192 Sum_probs=276.2
Q ss_pred CccEEEEEEEeCCCc---cchhHHHHHHHHHHHHhc-CCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccC
Q 002352 16 TIPVNVGLVLDMNGE---DGKIALSCINMSLSDFYN-SNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPE 91 (932)
Q Consensus 16 ~~~i~IG~i~~~s~~---~g~~~~~a~~lAv~~iN~-~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~ 91 (932)
.++|+||+++|++|. .|.....|+++|++++|+ .+++.|++|+++++|++++|..++.++++|+.+++|.+||||.
T Consensus 2 ~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~ 81 (374)
T 3n0x_A 2 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 81 (374)
T ss_dssp --CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCcCCEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcCC
Confidence 457999999999994 478899999999999998 6888899999999999999999999999999988999999999
Q ss_pred ChhHHHHHHHhcCCCCccEEecccCCCCccCC-CCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHH
Q 002352 92 KSMQTNFIIQLGNKSQVPILSFSATSPSLTSI-RSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPS 170 (932)
Q Consensus 92 ~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~-~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~ 170 (932)
+|..+.+++++++.+++|+|++.++++.+++. .+||+||+.|++..++.+++.++++++| +|++|+.|++||....+.
T Consensus 82 ~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g~~~~~~ 160 (374)
T 3n0x_A 82 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFGRDGVAA 160 (374)
T ss_dssp SHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCchHHHHHHHH
Confidence 99999999999999999999988888888764 4899999999999999999987888888 799999999999999999
Q ss_pred HHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCC-----ceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecc
Q 002352 171 LTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ-----TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEG 245 (932)
Q Consensus 171 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~-----~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~ 245 (932)
+++.+++.|++|+....++.+ ..|+..++.+|++.+ +|+|++.+.+... .+.++.+.++...++.++....
T Consensus 161 ~~~~~~~~G~~vv~~~~~~~~--~~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~~~~~~~g~~~~~~~~ 236 (374)
T 3n0x_A 161 FKEALAKTGATLATEEYVPTT--TTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQDMDPKRYGIELSTGGN 236 (374)
T ss_dssp HHHHHTTTTCEEEEEEEECTT--CCCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHHTCGGGGTEEEEECCC
T ss_pred HHHHHHHcCCEEeeeecCCCC--CccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHHcchhhcCCeeeeccc
Confidence 999999999999988877643 556999999999888 9999987544322 2455666666555665554432
Q ss_pred cchhcccCChhhhhhccceEEEeec---CCCChhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHHHHHhc
Q 002352 246 MTNLLRTLEPSVIDSMQGVIGVRPY---VPKTKAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEKAG 322 (932)
Q Consensus 246 ~~~~~~~~~~~~~~~~~g~l~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~Al~~~~ 322 (932)
...... ......|+.+...+ .++++..++|.++|+++|+. .|+.+++.+|||++++++|+++++
T Consensus 237 ~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~g~--------~p~~~a~~~Yda~~~l~~Al~~ag 303 (374)
T 3n0x_A 237 ILPALA-----AYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNA--------PPDFFTAGGFSAAMAVVTAVQKAK 303 (374)
T ss_dssp CTTGGG-----GGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHHSS--------CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhh-----hhhhhcCccccceeccCCCCCHHHHHHHHHHHHHHCC--------CCChhHHHHHHHHHHHHHHHHHhC
Confidence 221111 11345676666543 34578899999999999986 788999999999999999999987
Q ss_pred cccccccccccCCCCCccccccccCChHHHHHHhhcceeeeeeeeEEee-CCccccccEEEEEee-cC
Q 002352 323 ITSFGFDKTNVSSNATDLEAFGISRNGPKLLQALSSTRFKGLTGDYVFV-DGQLQSSAFEIINVN-NG 388 (932)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~~f~-~g~~~~~~~~I~n~~-~g 388 (932)
+. ++..|.++|++++|+|++|++.|+ ++++....+.|++++ +|
T Consensus 304 ~~-----------------------~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~ 348 (374)
T 3n0x_A 304 ST-----------------------DTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVDP 348 (374)
T ss_dssp SC-----------------------CHHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEEEECCT
T ss_pred CC-----------------------CHHHHHHHHhcCCccCCCCCEEECcccCccccceEEEEEEeCC
Confidence 43 679999999999999999999997 433345789999998 44
No 28
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=100.00 E-value=5.1e-36 Score=332.05 Aligned_cols=336 Identities=19% Similarity=0.206 Sum_probs=288.4
Q ss_pred ccEEEEEEEeCCCc---cchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCCh
Q 002352 17 IPVNVGLVLDMNGE---DGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKS 93 (932)
Q Consensus 17 ~~i~IG~i~~~s~~---~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s 93 (932)
++|+||+++|++|. +|.....|+++|++++|++|++.|+++++++.|+++++..+.+.+.+|+++ +|.+||||.++
T Consensus 1 ~~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~d~~~~~~~~~~~~~~l~~~-~v~~iig~~~s 79 (346)
T 1usg_A 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVND-GIKYVIGHLCS 79 (346)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHT-TCCEEECCSSH
T ss_pred CcEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhC-CCCEEEcCCCc
Confidence 36999999999984 577889999999999999999999999999999999999999999999975 99999999999
Q ss_pred hHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHH-HHcCCeEEEEEEEcCCcCCChHHHHH
Q 002352 94 MQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAII-KAFGWREAVPIYVDNQYGEEMIPSLT 172 (932)
Q Consensus 94 ~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l-~~~~w~~v~ii~~d~~~g~~~~~~l~ 172 (932)
..+.+++.++++.++|+|++.++++.+++..+|++||+.|++..++.++++++ +++||++|++|+.++.+|....+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~ 159 (346)
T 1usg_A 80 SSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQ 159 (346)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHH
Confidence 99999999999999999999888877776558999999999999999999998 45799999999999889998899999
Q ss_pred HHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecccchhccc
Q 002352 173 DALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTNLLRT 252 (932)
Q Consensus 173 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~~~~~~ 252 (932)
+++++.|+++.....++.. ..++...++++++.++++|++.+....+..+++++++.|+..+ |+.++++... ..
T Consensus 160 ~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~-~~ 233 (346)
T 1usg_A 160 DGLKAANANVVFFDGITAG--EKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQ---FMGPEGVGNA-SL 233 (346)
T ss_dssp HHHHHTTCCEEEEEECCTT--CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCCT-TH
T ss_pred HHHHHcCCEEEEEeccCCC--CcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCCe---EEecCCCCcH-HH
Confidence 9999999998876665433 3457788999998999999999988889999999999999776 8888776431 11
Q ss_pred CChhhhhhccceEEEeecC-CCChhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHHHHHhcccccccccc
Q 002352 253 LEPSVIDSMQGVIGVRPYV-PKTKAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEKAGITSFGFDKT 331 (932)
Q Consensus 253 ~~~~~~~~~~g~l~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~Al~~~~~~~~~~~~~ 331 (932)
. ....+..+|+++..++. ...+..++|.++|+++|+. .++.+++.+|||++++++|++++++.
T Consensus 234 ~-~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~--------~~~~~~~~~yda~~~~~~al~~~g~~------- 297 (346)
T 1usg_A 234 S-NIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKKD--------PSGPYVWITYAAVQSLATALERTGSD------- 297 (346)
T ss_dssp H-HHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTTCC--------CCCHHHHHHHHHHHHHHHHHHHHCCC-------
T ss_pred H-HHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHhCC--------CCchhHHHHHHHHHHHHHHHHHhCCC-------
Confidence 0 11234678988877653 3467899999999998875 67889999999999999999998632
Q ss_pred ccCCCCCccccccccCChHHHHHHhhcceeeeeeeeEEee-CCccccccEEEEEee-cC-eEE
Q 002352 332 NVSSNATDLEAFGISRNGPKLLQALSSTRFKGLTGDYVFV-DGQLQSSAFEIINVN-NG-ARG 391 (932)
Q Consensus 332 ~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~~f~-~g~~~~~~~~I~n~~-~g-~~~ 391 (932)
++..|.++|++.+|+|++|++.|+ +|++....|.|++++ +| ++.
T Consensus 298 ----------------~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~~ 344 (346)
T 1usg_A 298 ----------------EPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTK 344 (346)
T ss_dssp ----------------CHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEE
T ss_pred ----------------CHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEEe
Confidence 578999999999999999999997 899876789999998 77 443
No 29
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=100.00 E-value=2.3e-36 Score=340.95 Aligned_cols=353 Identities=10% Similarity=0.027 Sum_probs=298.4
Q ss_pred CCccEEEEEEEeCCCc---cchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccC
Q 002352 15 TTIPVNVGLVLDMNGE---DGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPE 91 (932)
Q Consensus 15 ~~~~i~IG~i~~~s~~---~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~ 91 (932)
+.++|+||+++|++|. .|.....|+++|++++|++++++|++++++++|+++++..+.+.+.+|+.+++|.+||| .
T Consensus 4 a~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig-~ 82 (392)
T 3lkb_A 4 GQQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVPGVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLS-Y 82 (392)
T ss_dssp CCEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSSTTEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEE-C
T ss_pred cCCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcCCeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEe-C
Confidence 4678999999999994 57789999999999999999999999999999999999999999999999889999999 6
Q ss_pred ChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHH-cCCeEEEEEEEcCCcCCChHHH
Q 002352 92 KSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKA-FGWREAVPIYVDNQYGEEMIPS 170 (932)
Q Consensus 92 ~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~-~~w~~v~ii~~d~~~g~~~~~~ 170 (932)
+|..+.+++.+++..++|+|+++++++......+||+||+.|++..++.++++++.. +||++|++|+.+++||....+.
T Consensus 83 ~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~~~ 162 (392)
T 3lkb_A 83 ATGANLQLKPLIQELRIPTIPASMHIELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPVED 162 (392)
T ss_dssp CHHHHHHHHHHHHHHTCCEEESCCCGGGGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTTHHH
T ss_pred CcHHHHHHHHHHHhCCceEEecccChhhccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchhhhHHHH
Confidence 888899999999999999999876544233356899999999999999999999866 6999999999999999999999
Q ss_pred HHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecccchhc
Q 002352 171 LTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTNLL 250 (932)
Q Consensus 171 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~~~~ 250 (932)
+++++++.|++++....++. ...++...+.++++.++++|++.+....+..+++++++.|+..+ |+.++++...
T Consensus 163 ~~~~l~~~G~~v~~~~~~~~--~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~- 236 (392)
T 3lkb_A 163 ARKAARELGLQIVDVQEVGS--GNLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKMR---HLGAHYTGGP- 236 (392)
T ss_dssp HHHHHHHHTCEEEEEEECCT--TCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCSH-
T ss_pred HHHHHHHcCCeEEEEEeeCC--CCcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---EEEecCcccH-
Confidence 99999999999988776653 34568899999999999999999999999999999999999766 7776554321
Q ss_pred ccCChhhhhhccceEEEeecCCC--ChhHHHHHHHHHHhhhccCCCCCccccch----hhHHHHHHHHHHHHHHHHhccc
Q 002352 251 RTLEPSVIDSMQGVIGVRPYVPK--TKAFENFRVRWKRKFLQENPSLFDVELNI----LGLFAYDATRALAVAVEKAGIT 324 (932)
Q Consensus 251 ~~~~~~~~~~~~g~l~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~----~a~~~YDav~~la~Al~~~~~~ 324 (932)
... .......+|++...++.+. .+..++|.++|+++|+. .++. +++.+|||+++++.|++++++.
T Consensus 237 ~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--------~p~~~~~~~~~~~yda~~~~~~al~~ag~~ 307 (392)
T 3lkb_A 237 DLI-ALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKYGR--------PENFIESVNYTNGMLAAAIAVEAIRRAQER 307 (392)
T ss_dssp HHH-HHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHTTC--------CHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHhCC--------CcccccchhHHHHHHHHHHHHHHHHHhhcc
Confidence 111 1233468899888876442 55688999999999986 4444 4789999999999999998752
Q ss_pred cccccccccCCCCCccccccccCChHHHHHHhhcce----ee-------eeeeeEEee-CCccccccEEEEEee-cCeEE
Q 002352 325 SFGFDKTNVSSNATDLEAFGISRNGPKLLQALSSTR----FK-------GLTGDYVFV-DGQLQSSAFEIINVN-NGARG 391 (932)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~----f~-------G~tG~~~f~-~g~~~~~~~~I~n~~-~g~~~ 391 (932)
. .+.++..|.++|++++ |+ |++|++.|+ +|++....+.|++++ .+++.
T Consensus 308 ~-------------------~~~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~~~g~~~~ 368 (392)
T 3lkb_A 308 F-------------------KRITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEAKGGRFVP 368 (392)
T ss_dssp H-------------------SSCCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEEETTEEEE
T ss_pred C-------------------CCCCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEEEeCCEEEE
Confidence 1 1247899999999997 98 999999997 777666778999998 45999
Q ss_pred EEEEcCCCCcc
Q 002352 392 VGFWTPEKGLT 402 (932)
Q Consensus 392 vG~w~~~~g~~ 402 (932)
|+.|....++.
T Consensus 369 v~~w~~~~~~~ 379 (392)
T 3lkb_A 369 VTEPFTSALFR 379 (392)
T ss_dssp CSCCBCCHHHH
T ss_pred eccccchhHHH
Confidence 99998776554
No 30
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=100.00 E-value=2e-35 Score=330.34 Aligned_cols=343 Identities=16% Similarity=0.210 Sum_probs=292.9
Q ss_pred CCccEEEEEEEeCCCc---cchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccC
Q 002352 15 TTIPVNVGLVLDMNGE---DGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPE 91 (932)
Q Consensus 15 ~~~~i~IG~i~~~s~~---~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~ 91 (932)
+.++|+||+++|++|. +|.....|+++|++++|. ++.|++++++++|+++++..+.+.+.+|+.+++|.+||||.
T Consensus 3 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~--~i~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~~ 80 (368)
T 4eyg_A 3 AEDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGD--TVAGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGFG 80 (368)
T ss_dssp -CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCS--EETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCC--CCCCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECCC
Confidence 4678999999999984 477899999999999973 36789999999999999999999999999977999999999
Q ss_pred ChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHH
Q 002352 92 KSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSL 171 (932)
Q Consensus 92 ~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l 171 (932)
++..+.+++.+++..++|+|+++++++.+++. +||+||+.|++..++.++++++.++||++|++|+.++.+|....+.+
T Consensus 81 ~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~~ 159 (368)
T 4eyg_A 81 ITPAALAAAPLATQAKVPEIVMAAGTSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAFF 159 (368)
T ss_dssp SHHHHHHHHHHHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhCCceEEeccCCChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHhHHHHHHH
Confidence 99999999999999999999999888877665 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecccc--hh
Q 002352 172 TDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMT--NL 249 (932)
Q Consensus 172 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~--~~ 249 (932)
.+++++.|++++....++.. ..++...+.++++.++++|++.+.+..+..+++++++.|+..+++.|+.++++. ..
T Consensus 160 ~~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~ 237 (368)
T 4eyg_A 160 KERFTAGGGEIVEEIKVPLA--NPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPGDVMDDDL 237 (368)
T ss_dssp HHHHHHTTCEEEEEEEECSS--SCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEETTTTCHHH
T ss_pred HHHHHHcCCEEEEEEeCCCC--CCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEecCcccCHHH
Confidence 99999999999887776543 456889999999999999999999889999999999999986667788887433 22
Q ss_pred cccCChhhhhhccceEEEeecCC--CChhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHHHHHhcccccc
Q 002352 250 LRTLEPSVIDSMQGVIGVRPYVP--KTKAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEKAGITSFG 327 (932)
Q Consensus 250 ~~~~~~~~~~~~~g~l~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~Al~~~~~~~~~ 327 (932)
+... .+..+|++...++.+ .++..++|.++| ++|+.. .++.+++.+|||++++++|+++++..
T Consensus 238 ~~~~----g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~-------~p~~~~~~~yda~~~~~~al~~~g~~--- 302 (368)
T 4eyg_A 238 LNSM----GDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEFGQ-------RPGFMAVGGYDGIHLVFEALKKTGGK--- 302 (368)
T ss_dssp HTTC----CGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHHSS-------CCCHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHhh----hhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhCCC-------CCChHHHHHHHHHHHHHHHHHHhCCC---
Confidence 2222 245788888877654 468899999999 888432 67899999999999999999998622
Q ss_pred ccccccCCCCCccccccccCChHHHHHHhhcceeeeeeeeEEee--CCccccccEEEEEee--cC-e--EEEEEEcC
Q 002352 328 FDKTNVSSNATDLEAFGISRNGPKLLQALSSTRFKGLTGDYVFV--DGQLQSSAFEIINVN--NG-A--RGVGFWTP 397 (932)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~~f~--~g~~~~~~~~I~n~~--~g-~--~~vG~w~~ 397 (932)
.++..|.++|++++|+|++|++.|+ +|+ ....+.|++++ +| + ..++.|.+
T Consensus 303 -------------------~~~~~l~~al~~~~~~g~~G~i~f~~~~~~-~~~~~~i~~~~~~~G~~~~v~~~~~~~ 359 (368)
T 4eyg_A 303 -------------------ADGDSLIAAMKGMKWESPRGPISIDPETRD-IVQNIYIRKVEKVDGELYNIEFAKFDA 359 (368)
T ss_dssp -------------------CSHHHHHHHHTTCEEEETTEEEEECTTTCC-EEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred -------------------CCHHHHHHHHHcCCcccCCCCeEECcccCC-cccceEEEEEEecCCeEEEEEeecccc
Confidence 2689999999999999999999997 555 45678899998 66 4 44445443
No 31
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=100.00 E-value=1.5e-35 Score=333.90 Aligned_cols=346 Identities=17% Similarity=0.165 Sum_probs=292.0
Q ss_pred CccEEEEEEEeCCCc---cchhHHHHHHHHHHHHhcCCCC--CCc--EEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEE
Q 002352 16 TIPVNVGLVLDMNGE---DGKIALSCINMSLSDFYNSNSH--YKT--RLLLNTRNSKGDVVAAAAAALDLLNNVLVQAIL 88 (932)
Q Consensus 16 ~~~i~IG~i~~~s~~---~g~~~~~a~~lAv~~iN~~~~~--~g~--~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aii 88 (932)
.++|+||+++|++|. .|.....|+++|++++|++|++ .|+ +++++++|+++++..+.+.+.+|+.+++|.+||
T Consensus 2 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~ii 81 (391)
T 3eaf_A 2 SLTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAII 81 (391)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEE
T ss_pred CccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEE
Confidence 468999999999994 5778899999999999999999 899 999999999999999999999999777999999
Q ss_pred ccCChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHH-cCCeEEEEEEE-cCCcCCC
Q 002352 89 GPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKA-FGWREAVPIYV-DNQYGEE 166 (932)
Q Consensus 89 Gp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~-~~w~~v~ii~~-d~~~g~~ 166 (932)
| .+|..+.+++.+++..++|+|+++++++ +. .+||+||+.|++..++.++++++.. +||++|++|+. +++||..
T Consensus 82 G-~~s~~~~a~~~~~~~~~iP~i~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g~~ 157 (391)
T 3eaf_A 82 G-WGTADTEKLSDQVDTDKITYISASYSAK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYSRS 157 (391)
T ss_dssp E-CCHHHHHHHHHHHHHHTCEEEESCCCGG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHHHT
T ss_pred E-cCcHHHHHHHHHHhhcCCeEEecccchh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhHHH
Confidence 9 6899999999999999999999876544 33 5899999999999999999999877 79999999999 9999999
Q ss_pred hHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHH--HhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEec
Q 002352 167 MIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYK--LFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTE 244 (932)
Q Consensus 167 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~--l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~ 244 (932)
..+.+++++++.|++++....++. +..|+...+.+ |++.++++|++.+++..+..+++++++.|+..+ ++.++
T Consensus 158 ~~~~~~~~l~~~G~~v~~~~~~~~--~~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~ 232 (391)
T 3eaf_A 158 PIGAIKKAAPSLGLQVVGDYDLPL--RATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLDAF---LLTNV 232 (391)
T ss_dssp THHHHHHHTGGGTEEEEEEEECCT--TCCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCCCE---EEECG
T ss_pred HHHHHHHHHHHcCCceeeeeccCC--CCcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCCce---EEEec
Confidence 999999999999999988777653 45579999999 999999999999999999999999999999766 56554
Q ss_pred ccchhcccCChhhhhhccc-eEEEeecC-----CCChhHHHHHHHHHHhhhccCCCCCcccc--chhhHHHHHHHHHHHH
Q 002352 245 GMTNLLRTLEPSVIDSMQG-VIGVRPYV-----PKTKAFENFRVRWKRKFLQENPSLFDVEL--NILGLFAYDATRALAV 316 (932)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~g-~l~~~~~~-----~~~~~~~~f~~~~~~~~~~~~~~~~~~~~--~~~a~~~YDav~~la~ 316 (932)
+... .... ....+..+| ++...++. .+.+. .+|.++|+++|+.. .| +.+++.+|||++++++
T Consensus 233 ~~~~-~~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~-------~p~~~~~~~~~yda~~~l~~ 302 (391)
T 3eaf_A 233 WGFD-ERSP-QLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNGVS-------EDQINLRVVQGFVNVWLLIK 302 (391)
T ss_dssp GGCS-TTHH-HHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTTCC-------GGGCCHHHHHHHHHHHHHHH
T ss_pred cCCC-HHHH-HhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhCCC-------CcccccHHHHHHHHHHHHHH
Confidence 3321 1111 123346889 88777665 34555 67999999999831 34 4899999999999999
Q ss_pred HHHHh---ccccccccccccCCCCCccccccccCChHHHHHHhhcceee--eeee-eEEee-CCccccccEEEEEe-ecC
Q 002352 317 AVEKA---GITSFGFDKTNVSSNATDLEAFGISRNGPKLLQALSSTRFK--GLTG-DYVFV-DGQLQSSAFEIINV-NNG 388 (932)
Q Consensus 317 Al~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~--G~tG-~~~f~-~g~~~~~~~~I~n~-~~g 388 (932)
|++++ +. ...++..|.++|++.+|+ |++| ++.|+ +|++....+.|+++ ++|
T Consensus 303 Al~~a~~~g~---------------------~~~~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~~~G 361 (391)
T 3eaf_A 303 AIESVTSQDL---------------------QERGGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLGENG 361 (391)
T ss_dssp HHTTSCHHHH---------------------HHHTHHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEECTTS
T ss_pred HHHHHHhcCC---------------------CCCCHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEecCC
Confidence 99987 40 012679999999998898 9999 99997 56656788999999 465
Q ss_pred -eEEEEEEcCCCCc
Q 002352 389 -ARGVGFWTPEKGL 401 (932)
Q Consensus 389 -~~~vG~w~~~~g~ 401 (932)
++.|+.|+.....
T Consensus 362 ~~~~v~~~~~~~~~ 375 (391)
T 3eaf_A 362 ELQLMGKFEAPSQV 375 (391)
T ss_dssp SEEEEEEECCCTTC
T ss_pred EEEEeeeecCcccc
Confidence 9999999876644
No 32
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=100.00 E-value=3e-35 Score=328.19 Aligned_cols=336 Identities=13% Similarity=0.127 Sum_probs=287.4
Q ss_pred CccEEEEEEEeCCC---ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCC
Q 002352 16 TIPVNVGLVLDMNG---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEK 92 (932)
Q Consensus 16 ~~~i~IG~i~~~s~---~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~ 92 (932)
.++|+||+++|++| .+|.....|+++|++++|++|++.|++++++++|+++++..+.+.+.+|+.+++|.+||||.+
T Consensus 3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 82 (364)
T 3lop_A 3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGINGETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTVVG 82 (364)
T ss_dssp --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECCCC
T ss_pred CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcCCeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEecCC
Confidence 56899999999998 457788999999999999999999999999999999999999999999999889999999999
Q ss_pred hhHHHHHHH--hcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHH
Q 002352 93 SMQTNFIIQ--LGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPS 170 (932)
Q Consensus 93 s~~a~~v~~--~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~ 170 (932)
+..+.++++ +++..++|+|++.++++.+++ +|++||+.|++..++.++++++.++||++|++|+.+++||....+.
T Consensus 83 s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~~~ 160 (364)
T 3lop_A 83 TANVEALMREGVLAEARLPLVGPATGASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAITG 160 (364)
T ss_dssp HHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHHHHHHHH
T ss_pred CHHHHhhCchhhHHhcCCcEEEcccCcHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhhHHHHHH
Confidence 999999999 999999999999888877765 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecccchhc
Q 002352 171 LTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTNLL 250 (932)
Q Consensus 171 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~~~~ 250 (932)
+++++++.|++++....++. +..++...+.++++.++++|++.+....+..+++++++.|+..+ |+..+++...
T Consensus 161 ~~~~~~~~G~~v~~~~~~~~--~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~i~~~~~~~~- 234 (364)
T 3lop_A 161 VERTLKAHALAITAMASYPR--NTANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEAQ---LLGLSSIDPG- 234 (364)
T ss_dssp HHHHHHTTTCCCSEEEEECT--TSCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCCE---EEECTTSCHH-
T ss_pred HHHHHHHcCCcEEEEEEecC--CCccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCCe---EEEeccCChH-
Confidence 99999999999887766653 34568899999999999999999999999999999999999776 7777665421
Q ss_pred ccCChhhh-hhccceEEEee----cCCCChhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHHHHHhcccc
Q 002352 251 RTLEPSVI-DSMQGVIGVRP----YVPKTKAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEKAGITS 325 (932)
Q Consensus 251 ~~~~~~~~-~~~~g~l~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~Al~~~~~~~ 325 (932)
... .... +..+|++.... +....+..++|.++|+++++... .|+.+++.+|||+++++.|+++++.
T Consensus 235 ~~~-~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~------~p~~~a~~~yda~~~~~~al~~ag~-- 305 (364)
T 3lop_A 235 ILQ-KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAKDV------DLSFRAVEGFVAAKVLAEAIRRAGP-- 305 (364)
T ss_dssp HHH-HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCTTC------CCCHHHHHHHHHHHHHHHHHHHHCS--
T ss_pred HHH-HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCC------CCChHHHHHHHHHHHHHHHHHHhCC--
Confidence 111 1123 56788877652 22567899999999999887521 4688999999999999999999862
Q ss_pred ccccccccCCCCCccccccccCChHHHHHHhhcc-eeee-eeeeEEee-CCccccccEEEEEee-cC
Q 002352 326 FGFDKTNVSSNATDLEAFGISRNGPKLLQALSST-RFKG-LTGDYVFV-DGQLQSSAFEIINVN-NG 388 (932)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~-~f~G-~tG~~~f~-~g~~~~~~~~I~n~~-~g 388 (932)
+.++..|.++|+++ .|+| ++|++.|+ +++.......|..+. ++
T Consensus 306 --------------------~~~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~ 352 (364)
T 3lop_A 306 --------------------KPTREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNG 352 (364)
T ss_dssp --------------------SCCHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTS
T ss_pred --------------------CCCHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCC
Confidence 23689999999999 6999 99999997 555454566777776 44
No 33
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=100.00 E-value=1.9e-34 Score=324.67 Aligned_cols=343 Identities=15% Similarity=0.185 Sum_probs=282.7
Q ss_pred CCCCccEEEEEEEeCCCc---cchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEc
Q 002352 13 KNTTIPVNVGLVLDMNGE---DGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILG 89 (932)
Q Consensus 13 ~~~~~~i~IG~i~~~s~~---~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiG 89 (932)
..+.++|+||+++|++|. .|.....|+++|++++| |+++++++.|+++++..+.+.+++|+.+++|.+|||
T Consensus 22 ~~a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~------G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig 95 (386)
T 3sg0_A 22 TAAQAEIKIGITMSASGPGAALGQPQSKTVAALPKEIG------GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIG 95 (386)
T ss_dssp ---CCCEEEEEEECCSSTTHHHHHHHHHHGGGSCSEET------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEC
T ss_pred ccCCCceEEEEEeccCCchhhhcHHHHHHHHHHHHHcC------CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEEC
Confidence 456788999999999984 57788999999999884 689999999999999999999999999889999999
Q ss_pred cCChhHHHHHHHhcCCCCccEEecccCCCCcc--CCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCCh
Q 002352 90 PEKSMQTNFIIQLGNKSQVPILSFSATSPSLT--SIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEM 167 (932)
Q Consensus 90 p~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~--~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~ 167 (932)
|.++..+.++..++++.++|+|++.++++.+. ...+||+||+.+++..++.++++++..+||++|++|+.++.+|.+.
T Consensus 96 ~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~ 175 (386)
T 3sg0_A 96 SSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGY 175 (386)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHH
T ss_pred CCCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHHHHH
Confidence 99999999999999999999999998877776 3568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecccc
Q 002352 168 IPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMT 247 (932)
Q Consensus 168 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~ 247 (932)
.+.+++++++.|++++....++.. +.++...+.++++.++++|++.+++..+..+++++++.|+..+ ++.++++.
T Consensus 176 ~~~~~~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~ 250 (386)
T 3sg0_A 176 YKVLAAAAPKLGFELTTHEVYARS--DASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGA---IYQTHGVA 250 (386)
T ss_dssp HHHHHHHHHHHTCEECCCEEECTT--CSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCCSE---EECCGGGC
T ss_pred HHHHHHHHHHcCCEEEEEEeeCCC--CCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCCc---EEeccccC
Confidence 999999999999999876666533 4568889999999999999999998999999999999999765 66666654
Q ss_pred hhcccCChhhhhhccceEEEeec------CC-CC---hhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHH
Q 002352 248 NLLRTLEPSVIDSMQGVIGVRPY------VP-KT---KAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVA 317 (932)
Q Consensus 248 ~~~~~~~~~~~~~~~g~l~~~~~------~~-~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~A 317 (932)
.. ... ....+..+|++....+ .+ .+ +..++|.++|+++|+.. .++.+++.+||+++++++|
T Consensus 251 ~~-~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-------~p~~~~~~~yda~~~~~~a 321 (386)
T 3sg0_A 251 TE-EFI-KLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGGA-------APTIFGVHLWDSMTLVENA 321 (386)
T ss_dssp SH-HHH-HHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTTTC-------CCCHHHHHHHHHHHHHHHH
T ss_pred CH-HHH-HhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhCCC-------CCChhHHHHHHHHHHHHHH
Confidence 31 111 1233567888876542 12 22 45899999999999863 4688999999999999999
Q ss_pred HHHhccccccccccccCCCCCccccccccCChHHHHHHhhcc-eeeeeeeeEEee-CCcc--ccccEEEEEeecC-eEE
Q 002352 318 VEKAGITSFGFDKTNVSSNATDLEAFGISRNGPKLLQALSST-RFKGLTGDYVFV-DGQL--QSSAFEIINVNNG-ARG 391 (932)
Q Consensus 318 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~-~f~G~tG~~~f~-~g~~--~~~~~~I~n~~~g-~~~ 391 (932)
+++++... ..|.+.++..|.++|+++ +|+|++|++.|+ ++++ ....+.|+++++| ++.
T Consensus 322 l~~a~~~~----------------~~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~~~ 384 (386)
T 3sg0_A 322 IPAALKAA----------------KPGTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRDGAFRL 384 (386)
T ss_dssp HHHHHHHC----------------CTTSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEETTEEEE
T ss_pred HHHhhhcc----------------CCCCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEECCEEEe
Confidence 99985431 001233578999999999 899999999996 4332 2356889888855 543
No 34
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=100.00 E-value=1e-32 Score=310.07 Aligned_cols=342 Identities=13% Similarity=0.087 Sum_probs=280.8
Q ss_pred CCccEEEEEEEeCCCc---cchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccC
Q 002352 15 TTIPVNVGLVLDMNGE---DGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPE 91 (932)
Q Consensus 15 ~~~~i~IG~i~~~s~~---~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~ 91 (932)
+.++++||+++|++|. ++.....|+++|++++|++|+++|+++++++.|+++++..+.+.+.+|+.+++|.+||||.
T Consensus 4 ~~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~ 83 (385)
T 1pea_A 4 HQERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCY 83 (385)
T ss_dssp ----CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBTTBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred CCCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECCC
Confidence 4567999999999874 6778899999999999999999999999999999999999999999999866999999999
Q ss_pred ChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHH
Q 002352 92 KSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSL 171 (932)
Q Consensus 92 ~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l 171 (932)
++..+.++..+++..++|+|++.++.. ...++++||+.+++..++.++++++...+|++|++|+.++.++....+.+
T Consensus 84 ~s~~~~~~~~~~~~~~iP~v~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~ 160 (385)
T 1pea_A 84 MSHTRKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVM 160 (385)
T ss_dssp SHHHHHHHHHHHHHTTCEEEECSCCCC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCceEEECCcccC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCChHHHHHHHHH
Confidence 998888999999999999999876421 12368999999999999999999999999999999999888898889999
Q ss_pred HHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecccch-hc
Q 002352 172 TDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTN-LL 250 (932)
Q Consensus 172 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~~-~~ 250 (932)
++++++.|+++.....++......++...+.+|++.++++|++.++...+..+++++++.|+..+.+.++.. .+.. .+
T Consensus 161 ~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~~~-~~~~~~~ 239 (385)
T 1pea_A 161 RHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASL-TTSEAEV 239 (385)
T ss_dssp HHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEEES-SCCHHHH
T ss_pred HHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCCceEEec-ccchHHH
Confidence 999999999988665554333577899999999988999999988888899999999999987544444544 3432 22
Q ss_pred ccCChhhhhhccceEEEeecCC--CChhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHHHHHhccccccc
Q 002352 251 RTLEPSVIDSMQGVIGVRPYVP--KTKAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEKAGITSFGF 328 (932)
Q Consensus 251 ~~~~~~~~~~~~g~l~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~Al~~~~~~~~~~ 328 (932)
.... .+..+|+++..++.+ +++..++|.++|+++|+... .++.+++.+|||++++++|++++++.
T Consensus 240 ~~~~---~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~------~~~~~~~~~yda~~~~~~Al~~ag~~---- 306 (385)
T 1pea_A 240 AKME---SDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPENA------TITAWAEAAYWQTLLLGRAAQAAGNW---- 306 (385)
T ss_dssp TTSC---HHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCTTC------CCCHHHHHHHHHHHHHHHHHHHHTSC----
T ss_pred HhcC---chhhCCeEEecccccccCCHHHHHHHHHHHHHhCCCC------CCChHHHHHHHHHHHHHHHHHHhCCC----
Confidence 1121 245789888876653 47889999999999887521 46789999999999999999998632
Q ss_pred cccccCCCCCccccccccCChHHHHHHhhcceeeeeeeeEEee-CCccccccEEEEEee-cC-eEEE
Q 002352 329 DKTNVSSNATDLEAFGISRNGPKLLQALSSTRFKGLTGDYVFV-DGQLQSSAFEIINVN-NG-ARGV 392 (932)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~~f~-~g~~~~~~~~I~n~~-~g-~~~v 392 (932)
++..|.++|++++|+|++|.+.|+ +++.....+.|+++. +| ++.|
T Consensus 307 -------------------~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v 354 (385)
T 1pea_A 307 -------------------RVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVR 354 (385)
T ss_dssp -------------------CHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEE
T ss_pred -------------------CHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEe
Confidence 579999999999999999999997 455445677888884 55 5555
No 35
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=100.00 E-value=3.5e-33 Score=311.26 Aligned_cols=340 Identities=15% Similarity=0.151 Sum_probs=280.7
Q ss_pred CCCccEEEEEEEeCCCc---cchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcc
Q 002352 14 NTTIPVNVGLVLDMNGE---DGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGP 90 (932)
Q Consensus 14 ~~~~~i~IG~i~~~s~~---~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp 90 (932)
++.++|+||+++|++|. +|.....|+++|++++| |+++++++.|+++++..+.+.+.+|+.+++|.+||||
T Consensus 3 aa~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~------g~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 76 (362)
T 3snr_A 3 AETNEITVGISVTTTGPAAALGIPERNALEFVVKEIS------GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGS 76 (362)
T ss_dssp -CCCCEEEEEEECCSSTTHHHHHHHHHGGGGSCSEET------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCCCeEEEEEecccCchhhcCHHHHHHHHHHHHHhC------CeEEEEEEecCCCCHHHHHHHHHHHHhccCceEEEcC
Confidence 45678999999999984 46778899999999984 6899999999999999999999999998899999999
Q ss_pred CChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHH
Q 002352 91 EKSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPS 170 (932)
Q Consensus 91 ~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~ 170 (932)
.++..+.++..+++..++|+|++.++ + +....+|++||+.+++..++.++++++.++||++|++|+.++.+|....+.
T Consensus 77 ~~s~~~~~~~~~~~~~~ip~v~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~ 154 (362)
T 3snr_A 77 SVTPPSVAISNVANEAQIPHIALAPL-P-ITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFND 154 (362)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCC-C-CCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCccEEEecCC-c-cccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHH
Confidence 99999999999999999999998876 4 334568999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecccchhc
Q 002352 171 LTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTNLL 250 (932)
Q Consensus 171 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~~~~ 250 (932)
+++++++.|++++....++.. ..++...+.++++.++++|++.+....+..+++++++.|+..+ ++...++....
T Consensus 155 ~~~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~p---~i~~~g~~~~~ 229 (362)
T 3snr_A 155 LKKQGEAMGLKIVGEERFARP--DTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNGL---IYQTHGAASMD 229 (362)
T ss_dssp HHHHHHHTTCEEEEEEEECTT--CSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHTTCCSE---EEECGGGCSHH
T ss_pred HHHHHHHcCCEEEEEeecCCC--CCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCcc---EEeccCcCcHH
Confidence 999999999998877666533 4568888999998999999999989999999999999999776 56666654311
Q ss_pred ccCChhhhhhccceEEEeec-------C---CCChhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHHHHH
Q 002352 251 RTLEPSVIDSMQGVIGVRPY-------V---PKTKAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEK 320 (932)
Q Consensus 251 ~~~~~~~~~~~~g~l~~~~~-------~---~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~Al~~ 320 (932)
.. .......+|++....+ . +..+..++|.++|+++|+.. .++.+++.+|||++++++|+++
T Consensus 230 -~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-------~p~~~~~~~yda~~~~~~al~~ 300 (362)
T 3snr_A 230 -FI-RIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYGPS-------SRSQFAGHSYDAFKVLERVVPV 300 (362)
T ss_dssp -HH-HHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHHCTT-------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred -HH-HHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHhCCC-------CCCchhHhHHHHHHHHHHHHHH
Confidence 11 1233467888876642 1 22356899999999999863 4688999999999999999999
Q ss_pred hccccccccccccCCCCCccccccccCChHHHHHHhhcc-eeeeeeeeEEee-CCcc--ccccEEEEEeecC-eEE
Q 002352 321 AGITSFGFDKTNVSSNATDLEAFGISRNGPKLLQALSST-RFKGLTGDYVFV-DGQL--QSSAFEIINVNNG-ARG 391 (932)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~-~f~G~tG~~~f~-~g~~--~~~~~~I~n~~~g-~~~ 391 (932)
+++.. ..|.+.++..|.++|+++ +|+|++|++.|+ ++++ ....+.|+++++| ++.
T Consensus 301 a~~~~----------------~~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~~~ 360 (362)
T 3snr_A 301 ALKKA----------------KPGTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRILLTVKNGKYVI 360 (362)
T ss_dssp HHHHC----------------CTTSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCEEEEEETTEEEE
T ss_pred hhccc----------------cCCCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeEEEEEECCEEEE
Confidence 86431 012234679999999999 899999999996 4332 2456889888855 543
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.95 E-value=5.6e-27 Score=253.49 Aligned_cols=303 Identities=13% Similarity=0.111 Sum_probs=237.9
Q ss_pred EEEEEEeCCC---ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChhHH
Q 002352 20 NVGLVLDMNG---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSMQT 96 (932)
Q Consensus 20 ~IG~i~~~s~---~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~~a 96 (932)
|||+++|+|| .+|...+.|+++|. .|.+++++++|+++++ +..++.++++ ++|.+||||.+|..+
T Consensus 2 kIG~llplSG~~a~~G~~~~~G~~lA~---------~G~~i~l~~~D~~~~~--a~~~~~~l~~-~~v~~IiGp~~s~~~ 69 (325)
T 2h4a_A 2 QIGLLLPLSGDGQILGTTIQSGFNDAK---------GNSTIPVQVFDTSMNS--VQDIIAQAKQ-AGIKTLVGPLLKQNL 69 (325)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHH---------TTCCSCEEEEETTTSC--HHHHHHHHHH-TTCCEEECCCSHHHH
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHhc---------cCCCceEEEEECCCCh--HHHHHHHHHH-CCCCEEEeeCCHHHH
Confidence 6999999999 55888999999986 3688999999999987 5666777774 599999999999999
Q ss_pred HHHHHhc-CCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHH
Q 002352 97 NFIIQLG-NKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDAL 175 (932)
Q Consensus 97 ~~v~~~~-~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l 175 (932)
.+++..+ ...++|+|++++++. .....+.|+||+.| ..+++++++++...|.+++++|+.+++||.+..+.|++++
T Consensus 70 ~a~~~~~~~~~~vp~i~~~~~~~-~~~~~~~~~f~~~~--~~~~~~~a~~a~~~g~k~vail~~~~~yG~~~~~~F~~~~ 146 (325)
T 2h4a_A 70 DVILADPAQIQGMDVLALNATPN-SRAIPQLCYYGLSP--EDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRW 146 (325)
T ss_dssp HHHHHCGGGGTTCEEEESCCCSS-CCCCTTEEECCCCH--HHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHhhhhccCCCcEEECCCCcc-ccCCCCeEEEECCH--HHHHHHHHHHHHHcCCCeEEEEEcCCcHHHHHHHHHHHHH
Confidence 9999999 789999999877542 22233556677554 4578999999988899999999999999999999999999
Q ss_pred HhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecccchhcccCCh
Q 002352 176 QAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTNLLRTLEP 255 (932)
Q Consensus 176 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~~~~~~~~~ 255 (932)
++.|++|+..+.+.. . +|+..+|+++ ..++|+|++...+.++..+.++++..|...+ .+.++++......+..
T Consensus 147 ~~~Gg~vv~~~~y~~--~-~d~~~~l~~i-~~~pDaV~~~~~~~~~~~i~~~~~~~g~~~p---l~~~~~~~~~s~~~~~ 219 (325)
T 2h4a_A 147 QQLAGTDANIRYYNL--P-ADVTYFVQEN-NSNTTALYAVASPTELAEXKGYLTNIVPNLA---IYASSRASASATNTNT 219 (325)
T ss_dssp HHHHSSCCEEEEESS--T-THHHHHHHHS-TTCCCEEEECCCHHHHHHHHHHHTTTCTTCE---EEECGGGCCHHHHTCH
T ss_pred HHcCCCcceeEecCC--H-HHHHHHHHhc-CCCCCEEEEeCCHHHHhhhhhhHhhcCCCCC---EEEeccccccCCCCCc
Confidence 999999998887753 3 5899999998 4899999999999999888889888877666 7777777621112223
Q ss_pred hhhhhccceEEEe-ecC--CCChhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHHHHHhccccccccccc
Q 002352 256 SVIDSMQGVIGVR-PYV--PKTKAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEKAGITSFGFDKTN 332 (932)
Q Consensus 256 ~~~~~~~g~l~~~-~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~Al~~~~~~~~~~~~~~ 332 (932)
.....++|++... ++. ++.+.+++|.++|+.++ .+..+.+++|||+.+++++ .++.
T Consensus 220 ~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~----------~~~rl~AlgyDA~~l~~~l-~~l~---------- 278 (325)
T 2h4a_A 220 DFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY----------QLMRLYAMGADAWLLINQF-NELR---------- 278 (325)
T ss_dssp HHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH----------HHHHHHHHHHHHHHHHHTH-HHHH----------
T ss_pred hhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc----------chHHHHHHHHHHHHHHHHH-HHHh----------
Confidence 4456789987665 443 44677888887775443 2455679999999986554 3221
Q ss_pred cCCCCCccccccccCChHHHHHHhhcceeeeeeeeEEee-CCccccccEEEEEeecC
Q 002352 333 VSSNATDLEAFGISRNGPKLLQALSSTRFKGLTGDYVFV-DGQLQSSAFEIINVNNG 388 (932)
Q Consensus 333 ~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~~f~-~g~~~~~~~~I~n~~~g 388 (932)
.+.+..|+|+||.+.|+ +|+. ...+.+.++++|
T Consensus 279 ----------------------~~~~~~~~G~tG~l~~~~~g~~-~R~l~~~~~~~G 312 (325)
T 2h4a_A 279 ----------------------QVPGYRLSGLTGILSADTNCNV-ERDMTWYQYQDG 312 (325)
T ss_dssp ----------------------HSTTCCEEETTEEEEECTTCBE-EEECEEEEEETT
T ss_pred ----------------------hCCCCeeccCceeEEECCCCeE-EEeechhhccCC
Confidence 13346799999999997 8884 566788887755
No 37
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.95 E-value=7.4e-27 Score=255.59 Aligned_cols=309 Identities=13% Similarity=0.077 Sum_probs=238.0
Q ss_pred cEEEEEEEeCCC---ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChh
Q 002352 18 PVNVGLVLDMNG---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSM 94 (932)
Q Consensus 18 ~i~IG~i~~~s~---~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~ 94 (932)
.+|||+++|+|| ..|...+.|+++|++ |++++++++|++++|..+ +.+++.+++|.+||||.+|+
T Consensus 2 V~kIG~l~PlSG~~a~~G~~~~~g~~lA~~---------g~~i~l~~~D~~~~~~~a---a~~~~~~~~v~~iiGp~~s~ 69 (327)
T 3ckm_A 2 VSQIGLLLPLSGDGQILGTTIQSGFNDAKG---------NSTIPVQVFDTSMNSVQD---IIAQAKQAGIKTLVGPLLKQ 69 (327)
T ss_dssp -CCEEEEECCSSTTHHHHHHHHHHHHHHHT---------TCCSCEEEEETTTSCHHH---HHHHHHHTTCCEEECCCSHH
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHhCC---------CCCceEEEEeCCCCHHHH---HHHHHHHcCCeEEEEccccc
Confidence 379999999999 458889999999964 467899999999998665 34566677999999999998
Q ss_pred HHHHHHHhc-CCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHH
Q 002352 95 QTNFIIQLG-NKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTD 173 (932)
Q Consensus 95 ~a~~v~~~~-~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~ 173 (932)
.+.+++... +...+|+++.++++.. ...+++||+.+++..++.++++++...|++++++|+.+++||.+..+.|++
T Consensus 70 ~~~a~~~~~~~~~~v~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg~~~~~~f~~ 146 (327)
T 3ckm_A 70 NLDVILADPAQIQGMDVLALNATPNS---RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNV 146 (327)
T ss_dssp HHHHHHHCGGGGTTCEEEESCCCTTC---CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHH
T ss_pred cchhhHHHHHhccCceEeccCcCccc---ccCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecCChHHHHHHHHHHH
Confidence 888766654 5566777765443332 235899999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecccchhcccC
Q 002352 174 ALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTNLLRTL 253 (932)
Q Consensus 174 ~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~~~~~~~~~ 253 (932)
.+++.|++|+....++. ++ ....+.+++..++|+|++...+.++..+.+++++.|+..+ ++.++++.......
T Consensus 147 ~~~~~Gg~vv~~~~~~~--~~--~~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~~~~---~~~~~~~~~~~~~~ 219 (327)
T 3ckm_A 147 RWQQLAGTDANIRYYNL--PA--DVTYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPNLA---IYASSRASASATNT 219 (327)
T ss_dssp HHHHHHSSCCEEEEESS--TT--HHHHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTTCE---EEECGGGCCHHHHT
T ss_pred HHHHCCCeEEEEEECCC--Cc--hhhHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhccCC---EEeeeccccccchh
Confidence 99999999998887742 23 3356678889999999999999999999999999998766 77777665322222
Q ss_pred ChhhhhhccceEEEee-c--CCCChhHHHHHHHHHHhhhccCCCCCccccchhhHHHHHHHHHHHHHHHHhccccccccc
Q 002352 254 EPSVIDSMQGVIGVRP-Y--VPKTKAFENFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEKAGITSFGFDK 330 (932)
Q Consensus 254 ~~~~~~~~~g~l~~~~-~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~la~Al~~~~~~~~~~~~ 330 (932)
.......++|++.... + .++.+..++|.++|+++++. ..+.+++|||+.+++.+.+..
T Consensus 220 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~----------~~~~AlgyDA~~l~~~l~~~~--------- 280 (327)
T 3ckm_A 220 NTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQL----------MRLYAMGADAWLLINQFNELR--------- 280 (327)
T ss_dssp CHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHHH----------HHHHHHHHHHHHHHHTHHHHH---------
T ss_pred cchhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhcCC----------CchHHHHHHHHHHHHHHHHhc---------
Confidence 2223344677665543 3 34578889999988887754 236788999998776544332
Q ss_pred cccCCCCCccccccccCChHHHHHHhhcceeeeeeeeEEee-CCccccccEEEEEeecC-eEEE
Q 002352 331 TNVSSNATDLEAFGISRNGPKLLQALSSTRFKGLTGDYVFV-DGQLQSSAFEIINVNNG-ARGV 392 (932)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~g~~l~~~L~~~~f~G~tG~~~f~-~g~~~~~~~~I~n~~~g-~~~v 392 (932)
.+....|+|+||.+.|+ +|+ ....+.++++++| ++.|
T Consensus 281 ------------------------~~~~~~f~G~tG~i~fd~~G~-~~r~l~~~~~~~G~~vpv 319 (327)
T 3ckm_A 281 ------------------------QVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAIVPV 319 (327)
T ss_dssp ------------------------HSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEEEEC
T ss_pred ------------------------CCCCCCceeceEEEEECCCCC-CccccEEEEEECCEEEEc
Confidence 12235799999999997 887 3466778887765 5554
No 38
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.94 E-value=1.5e-26 Score=251.63 Aligned_cols=277 Identities=19% Similarity=0.353 Sum_probs=192.2
Q ss_pred CCCCcEEEEeecccCcccceEEEe-c-CCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCC---CCCCHHHHH
Q 002352 435 TNKRKLRIGVPVTKGFSDFVKVTI-D-PNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGT---SSGSYNDLM 509 (932)
Q Consensus 435 ~~~~~l~v~~~~~~~~~~~~~~~~-~-~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~---~ngs~~~li 509 (932)
..+++|+|++...| ||.+.+. + .... ++++.|+++||+++++++||++++++.++.. .+|. .+++|++++
T Consensus 10 ~~~~~l~V~~~~~~---P~~~~~~~~~~~~~-~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~-~~g~~~~~~~~~~~~~ 84 (312)
T 1yae_A 10 LSNRSLIVTTILEE---PYVLFKKSDKPLYG-NDRFEGYCIDLLRELSTILGFTYEIRLVEDG-KYGAQDDVNGQWNGMV 84 (312)
T ss_dssp TCSCEEEEEECCBT---TTBEECCCSSCCCG-GGGEESHHHHHHHHHHHHHCCEEEEEECSSC-CCCCBCTTTCCBCSHH
T ss_pred hcCceEEEEEeccC---CeeEEeccccccCC-CceEEEEEHHHHHHHHHHcCCeEEEEecCCC-ccceeccCCCcchHHH
Confidence 45788999997654 4565441 0 0112 6789999999999999999976444433221 2232 147899999
Q ss_pred HHHHcCcccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhh
Q 002352 510 YQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLE 589 (932)
Q Consensus 510 ~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~ 589 (932)
.+|.+|++|++++++++|++|.+.++||.||+..+.+++++++.....++|.|+.||+..
T Consensus 85 ~~l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~~-------------------- 144 (312)
T 1yae_A 85 RELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLV-------------------- 144 (312)
T ss_dssp HHHHTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC--------------------------------------
T ss_pred HHHhCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccccC--------------------
Confidence 999999999999999999999999999999999999999998865667899999999900
Q ss_pred cccCCCCCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHH
Q 002352 590 HRVNEDFRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQML 669 (932)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL 669 (932)
|+ |++++...|++++||
T Consensus 145 ---------------------------------p~------------------------------tv~~~~~~i~~~~dL 161 (312)
T 1yae_A 145 ---------------------------------PR------------------------------GSERMESPIDSADDL 161 (312)
T ss_dssp -------------------------------------------------------------------------CCSHHHH
T ss_pred ---------------------------------Cc------------------------------ccccccCCCCCHHHH
Confidence 00 455666779999999
Q ss_pred HhCCC---cEEEEcChhHHHHHHhcCCCc-----------ccccccCCHHHHHHHhhcccCCCceeEEEecccccccccc
Q 002352 670 IKSGD---NVGYRKDSFVFGILKQLGFDE-----------KKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIG 735 (932)
Q Consensus 670 ~~~~~---~vg~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~ 735 (932)
. ++ ++|+..++....++.+...+. .++..+++.++++++|.+|+ +|++.+...+.|+++
T Consensus 162 ~--g~~~~~vg~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~-----Da~i~~~~~~~~~~~ 234 (312)
T 1yae_A 162 A--KQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-----YAFLMESTTIEFVTQ 234 (312)
T ss_dssp H--TCSSSEEECBTTSHHHHHHHHCCBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHHSS-----EEEEEEHHHHHHHHT
T ss_pred h--hccCceEEEEeCChHHHHHHhccCchHHHHHHHHHhcCCCcccCCHHHHHHHHHcCC-----cEEEeccHHHHHHHh
Confidence 9 65 799776665667776543321 24567899999999999987 889999989999988
Q ss_pred cCCcceEEecccccccceEEEecCCCCChHHHHHHHHhhhccchHHHHHHHhccCCCCCCCCCCCCCccccccc
Q 002352 736 QYCSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASCPDASNAGSSHSLGLN 809 (932)
Q Consensus 736 ~~~~~l~~~~~~~~~~~~~~~~~k~s~l~~~in~~il~l~e~G~~~~~~~~~~~~~~~~~~~~~~~~~~~L~l~ 809 (932)
+.|+ +.++++.+...+++++++|+++|++.||++|.+|.++|.++++.+||++. ..|...... +...++++
T Consensus 235 ~~~~-l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~-~~c~~~~~~-~~~~~~~~ 305 (312)
T 1yae_A 235 RNCN-LTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRG-NGCPEEESK-EASALGVQ 305 (312)
T ss_dssp TCTT-EEEESSCSSCEEEEEEEETTCSSHHHHHHHHHHHHHHTHHHHHHHHHHCC-SCC---------------
T ss_pred cCCC-EEEecccccccceEEEEeCCCCcHHHHHHHHHHHHHcCCHHHHHhhhcCC-CCCCCCCCc-cchhhhhh
Confidence 8876 88898888888999999999999999999999999999999999999985 589865432 34444443
No 39
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.91 E-value=1.4e-24 Score=229.26 Aligned_cols=238 Identities=20% Similarity=0.355 Sum_probs=192.5
Q ss_pred CCCcEEEEeecccCcccceEEEec--CCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCC---CCCCHHHHHH
Q 002352 436 NKRKLRIGVPVTKGFSDFVKVTID--PNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGT---SSGSYNDLMY 510 (932)
Q Consensus 436 ~~~~l~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~---~ngs~~~li~ 510 (932)
++++|+|++...|| |.+.+.+ +.++ ++++.||++||++++++++|+++++++++.. ..|. .+++|++++.
T Consensus 2 ~~~~l~v~~~~~~P---~~~~~~~~~~~~~-~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~-~~g~~~~~~~~~~~~~~ 76 (259)
T 3g3k_A 2 SNRSLIVTTILEEP---YVLFKKSDKPLYG-NDRFEGYCIDLLRELSTHLGFTYEIRLVEDG-KYGAQDDVNGQWNGMVR 76 (259)
T ss_dssp -CCCEEEEECCBTT---TBEECCCSSCCCG-GGGEESHHHHHHHHHHHHHTCCEEEEECTTC-CCCCBCTTTCCBCHHHH
T ss_pred CCcEEEEEEecCCC---eEEEeecccccCC-CceeeeEHHHHHHHHHHHcCCeEEEEECCCC-CcCcccCCCCcchHHHH
Confidence 36789999986655 4555432 1223 5899999999999999999976555544432 1121 1468999999
Q ss_pred HHHcCcccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhc
Q 002352 511 QVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEH 590 (932)
Q Consensus 511 ~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~ 590 (932)
+|.+|++|++++++++|++|.+.++||.||+..+.+++++++..
T Consensus 77 ~l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~------------------------------------ 120 (259)
T 3g3k_A 77 ELIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGTP------------------------------------ 120 (259)
T ss_dssp HHHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSSS------------------------------------
T ss_pred HHhcCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCcc------------------------------------
Confidence 99999999999999999999999999999999999999986531
Q ss_pred ccCCCCCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHH
Q 002352 591 RVNEDFRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLI 670 (932)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~ 670 (932)
|++++||.
T Consensus 121 ------------------------------------------------------------------------i~~~~dL~ 128 (259)
T 3g3k_A 121 ------------------------------------------------------------------------IDSADDLA 128 (259)
T ss_dssp ------------------------------------------------------------------------CCSHHHHH
T ss_pred ------------------------------------------------------------------------ccCHHHhc
Confidence 78999999
Q ss_pred hCCCc---EEEEcChhHHHHHHhcCCCc-----------ccccccCCHHHHHHHhhcccCCCceeEEEeccccccccccc
Q 002352 671 KSGDN---VGYRKDSFVFGILKQLGFDE-----------KKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQ 736 (932)
Q Consensus 671 ~~~~~---vg~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~ 736 (932)
+++ +|+..++....++.+.+... ..+..+++.++++++|.+|+ +|++.+...+.|+.++
T Consensus 129 --g~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-----da~i~~~~~~~~~~~~ 201 (259)
T 3g3k_A 129 --KQTKIEYGAVEDGATMTFFKRSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-----YAFLMESTTIEFVTQR 201 (259)
T ss_dssp --TCSSSEEEEETTSHHHHHHHHCCSHHHHHHHHHHHHTHHHHEESSHHHHHHHHHHSS-----EEEEEEHHHHHHHHHH
T ss_pred --cCCCceEEEecCcHHHHHHhhccchhHHHHHHHHHhcCCCcccCCHHHHHHHHHhCC-----eEEEechHHHHHHhcC
Confidence 654 89888888888877644321 13356789999999999996 7999999899998888
Q ss_pred CCcceEEecccccccceEEEecCCCCChHHHHHHHHhhhccchHHHHHHHhccCCCCCC
Q 002352 737 YCSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASCP 795 (932)
Q Consensus 737 ~~~~l~~~~~~~~~~~~~~~~~k~s~l~~~in~~il~l~e~G~~~~~~~~~~~~~~~~~ 795 (932)
.|+ +.+++..+...+++++++|++||+..||++|.+|.++|.+++|.+|||+ ...|+
T Consensus 202 ~~~-l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~-~~~c~ 258 (259)
T 3g3k_A 202 NCN-LTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWR-GNGCP 258 (259)
T ss_dssp CTT-EEEESSCSSCEEECCEEETTCTHHHHHHHHHHHHHHTC-CHHHHHHHHC-C--CC
T ss_pred Cce-EEEecccceeeeEEEEECCCCccHHHHHHHHHHHHhcChHHHHHHhhcC-CCCCC
Confidence 776 8889888888999999999999999999999999999999999999998 45686
No 40
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.91 E-value=2.6e-25 Score=238.18 Aligned_cols=243 Identities=20% Similarity=0.318 Sum_probs=189.4
Q ss_pred cCCCCCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccC-CCCC-CCCCHHHHHH
Q 002352 433 IPTNKRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQ-PDGT-SSGSYNDLMY 510 (932)
Q Consensus 433 ~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~-~~g~-~ngs~~~li~ 510 (932)
.|.+|++|||||+..++|++|.... ++.++ .+++.|+++|+++++++++|++ ++++.+.. .+|. .+++|++++.
T Consensus 24 ~~~~~~~lrvgv~~~~~~~~~~~~~-~~~~~-~~~~~G~~~dl~~~i~~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~ 99 (284)
T 2a5s_A 24 DPLTETCVRNTVPCRKFVKINNSTN-EGMNV-KKCCKGFCIDILKKLSRTVKFT--YDLYLVTNGKHGKKVNNVWNGMIG 99 (284)
T ss_dssp CCC-CCCCTTCEEEEEEEESSSSSS-CEEEE-EEEEESHHHHHHHHHHHHHTCC--EEEEECCSSSSCCEETTEECHHHH
T ss_pred CCCCCcccccccccccccccccccc-CCCCC-cceeeEEhHHHHHHHHHHCCCC--EEEEEccCCccCcccCCCHHHHHH
Confidence 3567888999999888887774321 11111 3479999999999999999976 55554432 1222 3568999999
Q ss_pred HHHcCcccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhc
Q 002352 511 QVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEH 590 (932)
Q Consensus 511 ~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~ 590 (932)
+|.+|++|++++++++|++|.+.++||.||+.++.+++++++..
T Consensus 100 ~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------ 143 (284)
T 2a5s_A 100 EVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQ------------------------------------ 143 (284)
T ss_dssp HHHTTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTCC------------------------------------
T ss_pred HHhcCCcCEEEEEEEEeccccceEEeccCchhcCEEEEEECCcc------------------------------------
Confidence 99999999999999999999999999999999999999997632
Q ss_pred ccCCCCCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHH
Q 002352 591 RVNEDFRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLI 670 (932)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~ 670 (932)
+++++||.
T Consensus 144 ------------------------------------------------------------------------~~~~~dl~ 151 (284)
T 2a5s_A 144 ------------------------------------------------------------------------VTGLSDKK 151 (284)
T ss_dssp ------------------------------------------------------------------------CCSTTSHH
T ss_pred ------------------------------------------------------------------------cccccccc
Confidence 33444443
Q ss_pred h-------CCCcEEEEcChhHHHHHHhcCCCcc--ccccc--CCHHHHHHHhhcccCCCceeEEEecccccccccccC--
Q 002352 671 K-------SGDNVGYRKDSFVFGILKQLGFDEK--KLIAY--SSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQY-- 737 (932)
Q Consensus 671 ~-------~~~~vg~~~~s~~~~~l~~~~~~~~--~~~~~--~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~-- 737 (932)
. .++++|+..++.....+.+. ++.. ++..| .+.++++++|.+|+ +||++.+...+.++++++
T Consensus 152 ~~~~~~l~~~~~vg~v~~~s~~~~l~~~-~~~~~~~i~~~~~~~~~~~l~~l~~G~----vDa~i~d~~~~~~~~~~~~~ 226 (284)
T 2a5s_A 152 FQRPHDYSPPFRFGTVPNGSTERNIRNN-YPYMHQYMTRFNQRGVEDALVSLKTGK----LDAFIYDAAVLNYKAGRDEG 226 (284)
T ss_dssp HHSGGGSSSCCCEECCTTSHHHHHHHTT-CHHHHHHHGGGCCSSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHTCTT
T ss_pred cCChhHcCCCceEEEEeCCchHHHHHHH-HHHHHHHHHhccCCCHHHHHHHHHcCC----eeEEEEchHHHHHHHhcCCC
Confidence 2 25689977544445555542 3321 35566 79999999999999 999999999999988876
Q ss_pred CcceEEec--ccccccceEEEecCCCCChHHHHHHHHhhhccchHHHHHHHhccCCCCCC
Q 002352 738 CSKYTLIE--RTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASCP 795 (932)
Q Consensus 738 ~~~l~~~~--~~~~~~~~~~~~~k~s~l~~~in~~il~l~e~G~~~~~~~~~~~~~~~~~ 795 (932)
|+ +.+++ ..+...+++++++|+++|++.||++|.++.++|.+++|.+||+.. .|.
T Consensus 227 ~~-l~~~~~~~~~~~~~~~~a~~k~~~l~~~ln~~l~~l~~~g~~~~i~~kw~~~--~c~ 283 (284)
T 2a5s_A 227 CK-LVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLTG--ICH 283 (284)
T ss_dssp SC-EEEEECCCGGGCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHTCC--CCC
T ss_pred CC-EEEeCCccccccCceEEEecCCCHHHHHHHHHHHHHHhCChHHHHHHHhhhc--cCC
Confidence 75 77774 567788999999999999999999999999999999999999963 675
No 41
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.90 E-value=5e-24 Score=222.70 Aligned_cols=225 Identities=18% Similarity=0.283 Sum_probs=188.8
Q ss_pred CCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCc
Q 002352 437 KRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGK 516 (932)
Q Consensus 437 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~ 516 (932)
.++|+||+ .+.|+||.+... .++ ++++.||++||++++++++|+ ++++++.. |++++.+|.+|+
T Consensus 11 ~g~L~Vg~--~~~~pP~~~~~~--~d~-~g~~~G~~vdl~~~ia~~lg~--~~~~~~~~---------~~~~~~~l~~g~ 74 (243)
T 4h5g_A 11 KGKLVVAT--SPDYAPFEFQSL--VDG-KNQVVGADIDMAQAIADELGV--KLEILSMS---------FDNVLTSLQTGK 74 (243)
T ss_dssp HTEEEEEE--CCCBTTTBEEEE--ETT-EEEEESHHHHHHHHHHHHHTS--EEEEEECC---------GGGHHHHHHTTS
T ss_pred CCEEEEEE--CCCCCCcEeeec--cCC-CCcEEEeHHHHHHHHHHHhCC--ceEEeccc---------HHHHHHHHHcCC
Confidence 45799998 466778877532 112 678999999999999999995 56776654 999999999999
Q ss_pred ccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 002352 517 FDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNEDF 596 (932)
Q Consensus 517 ~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~~~ 596 (932)
+|++++++++|++|.+.++||.||+..+.++++++.+...
T Consensus 75 ~d~~~~~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~~~~---------------------------------------- 114 (243)
T 4h5g_A 75 ADLAVAGISATDERKEVFDFSIPYYENKISFLVHKADVEK---------------------------------------- 114 (243)
T ss_dssp CSEECSSCBCCHHHHTTEEECSCSBCCCEEEEEEGGGTTT----------------------------------------
T ss_pred CCcccccccCChhHccEEEccCccccCccccccccccccc----------------------------------------
Confidence 9999999999999999999999999999999998764332
Q ss_pred CCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCCcE
Q 002352 597 RGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGDNV 676 (932)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v 676 (932)
+++++||. |++|
T Consensus 115 ------------------------------------------------------------------~~~~~dl~--g~~i 126 (243)
T 4h5g_A 115 ------------------------------------------------------------------YKDLTSLE--SANI 126 (243)
T ss_dssp ------------------------------------------------------------------CCSHHHHH--TSEE
T ss_pred ------------------------------------------------------------------ccccccCC--CCEE
Confidence 78999999 9999
Q ss_pred EEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCCc-ceEEe-cccccccceE
Q 002352 677 GYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYCS-KYTLI-ERTFETAGFG 754 (932)
Q Consensus 677 g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~-~l~~~-~~~~~~~~~~ 754 (932)
|+..|+....++.+. .+..+++.+++.++++++|.+|+ +|+++.+...+.+++.++.. .+..+ .......+++
T Consensus 127 ~v~~g~~~~~~l~~~-~~~~~i~~~~~~~~~~~~l~~Gr----vD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (243)
T 4h5g_A 127 AAQKGTVPESMVKEQ-LPKAQLTSLTNMGEAVNELQAGK----IDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANA 201 (243)
T ss_dssp EEETTSHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHTS----CSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBC
T ss_pred EecCCcHHHHHHHHh-cccceeEEeCCHHHHHHHHHcCC----ccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEE
Confidence 999999998888774 56678889999999999999999 99999998888877776643 12222 3344556789
Q ss_pred EEecCCCC-ChHHHHHHHHhhhccchHHHHHHHhccC
Q 002352 755 FAFPLHSP-LVPEVSRAILNVTEGNKMKEIEDEWFKK 790 (932)
Q Consensus 755 ~~~~k~s~-l~~~in~~il~l~e~G~~~~~~~~~~~~ 790 (932)
++++|++| |+..||++|.+|+++|.+++|.+||+.-
T Consensus 202 ~a~~k~~~~L~~~~n~aL~~l~~dG~~~~i~~Kw~~~ 238 (243)
T 4h5g_A 202 VALRKNSDDLKEVVDKVIQKLKDEGTYQSYLEKAASL 238 (243)
T ss_dssp CEEESSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTS
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 99999886 9999999999999999999999999853
No 42
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.90 E-value=2.6e-24 Score=231.17 Aligned_cols=234 Identities=20% Similarity=0.308 Sum_probs=183.8
Q ss_pred CcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccC-CCCC-------CCCCHHHHH
Q 002352 438 RKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQ-PDGT-------SSGSYNDLM 509 (932)
Q Consensus 438 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~-~~g~-------~ngs~~~li 509 (932)
+.++|++. +.|+||.+.+. ++++.||++||+++|++++|++ ++++.+.. .+|. ++++|++++
T Consensus 41 ~~l~vg~~--~~~~P~~~~~~------~g~~~G~~vDll~~ia~~lg~~--~~~~~~~d~~~g~~~~~~~~~~~~w~~~~ 110 (292)
T 1pb7_A 41 KVICTGPN--DTSPGSPRHTV------PQCCYGFCIDLLIKLARTMNFT--YEVHLVADGKFGTQERVNNSNKKEWNGMM 110 (292)
T ss_dssp CEEEEEEC----------CEE------EEEEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCEEECTTSSCEEECHHH
T ss_pred ceeecccC--CCCCCcccccc------ccCcceeHHHHHHHHHHHcCce--EEEEEecCCcccccccccccccCcHHHHH
Confidence 45666653 33444444333 5689999999999999999976 55554321 2232 125899999
Q ss_pred HHHHcCcccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhh
Q 002352 510 YQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLE 589 (932)
Q Consensus 510 ~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~ 589 (932)
.+|.+|++|++++++++|++|.+.++||.||+..+.+++++++..
T Consensus 111 ~~l~~g~~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~~----------------------------------- 155 (292)
T 1pb7_A 111 GELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTR----------------------------------- 155 (292)
T ss_dssp HHHHHTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTCC-----------------------------------
T ss_pred HHHHcCCcCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCcC-----------------------------------
Confidence 999999999999999999999999999999999999999986632
Q ss_pred cccCCCCCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHH
Q 002352 590 HRVNEDFRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQML 669 (932)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL 669 (932)
+++++||
T Consensus 156 -------------------------------------------------------------------------i~~~~dl 162 (292)
T 1pb7_A 156 -------------------------------------------------------------------------ITGINDP 162 (292)
T ss_dssp -------------------------------------------------------------------------CCSTTCH
T ss_pred -------------------------------------------------------------------------CCCCcCc
Confidence 5567777
Q ss_pred HhCC---Cc-EEEEcChhHHHHHHhc-CC----CcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCCcc
Q 002352 670 IKSG---DN-VGYRKDSFVFGILKQL-GF----DEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYCSK 740 (932)
Q Consensus 670 ~~~~---~~-vg~~~~s~~~~~l~~~-~~----~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~ 740 (932)
...+ ++ +|+..++....++++. .+ +..++..+.+.++++++|.+|+ +||++.+...+.|+++++|+
T Consensus 163 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~----vDa~i~d~~~~~~~~~~~~~- 237 (292)
T 1pb7_A 163 RLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNK----LHAFIWDSAVLEFEASQKCD- 237 (292)
T ss_dssp HHHSCBTTBCEECBTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHHCTT-
T ss_pred cccCcccceEEEEEcCchHHHHhhhcccHHHHHHHHHhhcCCCHHHHHHHHHcCC----ceEEEEcHHHHHHHHhcCCC-
Confidence 6333 23 5788888777777542 00 1224567889999999999999 99999999999999988886
Q ss_pred eEEecccccccceEEEecCCCCChHHHHHHHHhhhccchHHHHHHHhccCCCCCC
Q 002352 741 YTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASCP 795 (932)
Q Consensus 741 l~~~~~~~~~~~~~~~~~k~s~l~~~in~~il~l~e~G~~~~~~~~~~~~~~~~~ 795 (932)
+.+++..+...+++++++|+++|++.||++|.++.++|.+++|.+||+. ...|.
T Consensus 238 l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~G~~~~l~~kw~~-~~~c~ 291 (292)
T 1pb7_A 238 LVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVR-YQECD 291 (292)
T ss_dssp EEECSSCSEEEEECCEEETTCSSHHHHHHHHHHHHHSSHHHHHHHHHTS-SSCCC
T ss_pred EEEcCccccCCceEEEEeCCCHHHHHHHHHHHHHHhCCCHHHHHHhhCC-CCCCC
Confidence 8888888888899999999999999999999999999999999999997 45685
No 43
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.90 E-value=3.3e-24 Score=230.79 Aligned_cols=213 Identities=18% Similarity=0.384 Sum_probs=176.1
Q ss_pred eEEEEeHHHHHHHHHHCCCcccEEEEeccC-CCCC-CCCCHHHHHHHHHcCcccEEEeeeeeeccccccccccccccccC
Q 002352 467 SVTGYSIAVFKAVIEELPYAVAYDFVPYAQ-PDGT-SSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESG 544 (932)
Q Consensus 467 ~~~G~~~dl~~~la~~l~f~~~~~~~~~~~-~~g~-~ngs~~~li~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~ 544 (932)
++.||++||+++|++++|++ ++++++.. .+|. .+++|++++.+|.+|++|++++++++|++|.+.++||.||+..+
T Consensus 67 ~~~G~~vdll~~ia~~lg~~--~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~ 144 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFD--FDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTS 144 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEE--EEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEE
T ss_pred CceEEhHHHHHHHHHHcCCc--EEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcc
Confidence 37999999999999999965 55544321 1221 35689999999999999999999999999999999999999999
Q ss_pred eEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCCCCCCcccccccchhhhHHHHhhhcCccccc
Q 002352 545 VSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGPAQHQVGTSFWFSFSTMVFSHRERVI 624 (932)
Q Consensus 545 ~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 624 (932)
.+++++++..
T Consensus 145 ~~i~~~~~~~---------------------------------------------------------------------- 154 (294)
T 2rc8_A 145 LGILVRTRGT---------------------------------------------------------------------- 154 (294)
T ss_dssp EEEEEETTSC----------------------------------------------------------------------
T ss_pred eEEEEECCCC----------------------------------------------------------------------
Confidence 9999987632
Q ss_pred ccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHH----hCCCcEEEEcChhHHHHHHhcCCCcc----
Q 002352 625 SNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLI----KSGDNVGYRKDSFVFGILKQLGFDEK---- 696 (932)
Q Consensus 625 s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~----~~~~~vg~~~~s~~~~~l~~~~~~~~---- 696 (932)
.|++++||. ..|+++|+..|+....++++. ++..
T Consensus 155 -------------------------------------~i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~~-~~~~~~~i 196 (294)
T 2rc8_A 155 -------------------------------------ELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQS-FPEMHEYM 196 (294)
T ss_dssp -------------------------------------CCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHH-CHHHHHHH
T ss_pred -------------------------------------CcCChhhhhhcCcccCeEEEEEcCChHHHHHHHH-HHHHHHHH
Confidence 167788886 247899999999988888774 2211
Q ss_pred cccccCCHHHHHHHhhc--ccCCCceeEEEecccccccccccC--CcceEEecccccccceEEEecCCCCChHHHHHHHH
Q 002352 697 KLIAYSSPEECDELFQK--GSAGGGIAAAFDEIPYTKPFIGQY--CSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAIL 772 (932)
Q Consensus 697 ~~~~~~~~~~~~~~l~~--g~~~~g~~a~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~k~s~l~~~in~~il 772 (932)
+...+.+.++++++|.+ |+ +||++.+...+.|+++++ |+ +++++..+...+++++++|+++|++.||++|.
T Consensus 197 ~~~~~~~~~~~~~~l~~~~Gr----vDa~i~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~ 271 (294)
T 2rc8_A 197 RRYNVPATPDGVQYLKNDPEK----LDAFIMDKALLDYEVSIDADCK-LLTVGKPFAIEGYGIGLPPNSPLTSNISELIS 271 (294)
T ss_dssp GGGCBSSHHHHHHHHHSSSCC----CSEEEEEHHHHHHHHHTCSSSC-EEECSCCEEEEEECCEECTTCTHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHhccCc----eeEEEecHHHHHHHHhhCCCCC-EEEcCCcccccceEEEecCCCHHHHHHHHHHH
Confidence 12357899999999999 88 999999999999988764 65 88888888888999999999999999999999
Q ss_pred hhhccchHHHHHHHhccCCCCCC
Q 002352 773 NVTEGNKMKEIEDEWFKKRASCP 795 (932)
Q Consensus 773 ~l~e~G~~~~~~~~~~~~~~~~~ 795 (932)
++.++|.++++.+||++ ...|.
T Consensus 272 ~l~~~G~~~~l~~kw~~-~~~c~ 293 (294)
T 2rc8_A 272 QYKSHGFMDVLHDKWYK-VVPCG 293 (294)
T ss_dssp HHHHTTHHHHHHHHHCC-C----
T ss_pred HHHhCCCHHHHHHhhcC-CCCCC
Confidence 99999999999999997 45675
No 44
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.90 E-value=7.7e-24 Score=221.25 Aligned_cols=224 Identities=16% Similarity=0.205 Sum_probs=183.9
Q ss_pred CCCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHC-CCcccEEEEeccCCCCCCCCCHHHHHHHHHc
Q 002352 436 NKRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEEL-PYAVAYDFVPYAQPDGTSSGSYNDLMYQVFR 514 (932)
Q Consensus 436 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l-~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~ 514 (932)
+.++|+||+ .+.|+||.+.+. ++++.||++||+++++++| | +++++++.+ |++++..|.+
T Consensus 7 ~~~tl~vg~--~~~~pP~~~~d~------~G~~~G~~vdl~~~ia~~l~g--~~~~~~~~~---------~~~~~~~l~~ 67 (243)
T 4gvo_A 7 KVQTITVGT--GTQFPNVCFLDE------NGKLTGYDVELVKEIDKRLPG--YKFKFKTMD---------FSNLLVSLGA 67 (243)
T ss_dssp -CEEEEEEE--CSEETTTEEECT------TSCEESHHHHHHHHHHHTCTT--EEEEEEECC---------GGGHHHHHHT
T ss_pred cCCeEEEEE--CCCCCCeEEECC------CCcEEEhHHHHHHHHHHhccC--CeEEEEECC---------HHHHHHHHHC
Confidence 467899998 456778887764 7789999999999999998 8 456666643 9999999999
Q ss_pred CcccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCC
Q 002352 515 GKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNE 594 (932)
Q Consensus 515 g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~ 594 (932)
|++|++++++++|++|.+.++||.||+.....+++.++...
T Consensus 68 g~~D~~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~--------------------------------------- 108 (243)
T 4gvo_A 68 GKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNN--------------------------------------- 108 (243)
T ss_dssp TSCSEECSCCBCCHHHHHHSEECSSCCEECCEEEEEETTCC---------------------------------------
T ss_pred CCCCEecccCCCCHHHhhhhhhhhhhcccccceEEEecccc---------------------------------------
Confidence 99999999999999999999999998876665555444322
Q ss_pred CCCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCC
Q 002352 595 DFRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGD 674 (932)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~ 674 (932)
.+++++||. |+
T Consensus 109 -------------------------------------------------------------------~~~~~~dL~--g~ 119 (243)
T 4gvo_A 109 -------------------------------------------------------------------SINSTKDLA--GK 119 (243)
T ss_dssp -------------------------------------------------------------------SCSSGGGGT--TC
T ss_pred -------------------------------------------------------------------ccCchHHhc--CC
Confidence 278999998 99
Q ss_pred cEEEEcChhHHHHHHh----cCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCCcceEEecccccc
Q 002352 675 NVGYRKDSFVFGILKQ----LGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYCSKYTLIERTFET 750 (932)
Q Consensus 675 ~vg~~~~s~~~~~l~~----~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 750 (932)
+||+..|+....+++. ..........+.+.++++++|..|+ +||++.+...+.++.++....+.++++.+..
T Consensus 120 ~v~v~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (243)
T 4gvo_A 120 RVITSATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGR----ADATISTPFAVDFQNKTSAIKEKVVGDVLSN 195 (243)
T ss_dssp EEEECTTCHHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHHTS----CSBEEECHHHHHHHHHTCSSCEEEEEEEEEC
T ss_pred eEEEecCchHHHHHHHHHHhccccceeccccCChHHHHHHHHcCC----ccEEEccHHHHHHHHhhCCCceEEeccCCCC
Confidence 9999999877666654 2222222335678889999999999 9999999988888887764447778888888
Q ss_pred cceEEEecCCCC-ChHHHHHHHHhhhccchHHHHHHHhccC
Q 002352 751 AGFGFAFPLHSP-LVPEVSRAILNVTEGNKMKEIEDEWFKK 790 (932)
Q Consensus 751 ~~~~~~~~k~s~-l~~~in~~il~l~e~G~~~~~~~~~~~~ 790 (932)
.+++++++|+++ |++.||++|.+|+++|.+++|.+|||+.
T Consensus 196 ~~~~~~~~k~~~~l~~~in~~l~~l~~~G~~~~i~~kw~g~ 236 (243)
T 4gvo_A 196 AKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLGA 236 (243)
T ss_dssp CEECCEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCG
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHCCC
Confidence 899999999776 9999999999999999999999999963
No 45
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.89 E-value=4.9e-23 Score=218.18 Aligned_cols=240 Identities=21% Similarity=0.316 Sum_probs=187.1
Q ss_pred CCCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccC-CCCC--CCCCHHHHHHHH
Q 002352 436 NKRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQ-PDGT--SSGSYNDLMYQV 512 (932)
Q Consensus 436 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~-~~g~--~ngs~~~li~~l 512 (932)
+|++|+|++...| ||.+.+.++.++ .+++.|+++||++++++++|++ ++++.+.. ..|. .+++|++++.+|
T Consensus 1 ~~~~l~v~~~~~p---P~~~~~~~~~g~-~g~~~G~~~dl~~~i~~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~~l 74 (265)
T 2v3u_A 1 GGVVLRVVTVLEE---PFVMVSENVLGK-PKKYQGFSIDVLDALSNYLGFN--YEIYVAPDHKYGSPQEDGTWNGLVGEL 74 (265)
T ss_dssp CCCEEEEEECCBT---TTBEEECCSTTC-CCEEESHHHHHHHHHHHHHTCE--EEEEECTTCCCCCBCTTSCBCHHHHHH
T ss_pred CCeEEEEEEeccC---CeEEEecCCCCC-cceEeEEEHHHHHHHHHHcCCc--EEEEEccCCcccccCCCCCcchHHHHH
Confidence 4788999998664 557666543332 4799999999999999999965 55554321 1221 246899999999
Q ss_pred HcCcccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhccc
Q 002352 513 FRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRV 592 (932)
Q Consensus 513 ~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~ 592 (932)
.+|++|++++++++|++|.+.++||.||+..+.++++++...
T Consensus 75 ~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~-------------------------------------- 116 (265)
T 2v3u_A 75 VFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTS-------------------------------------- 116 (265)
T ss_dssp HTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCC--------------------------------------
T ss_pred HcCCcCeEEeeeEeehhhhccccccceeeeccEEEEEECCCC--------------------------------------
Confidence 999999999889999999999999999999999999986531
Q ss_pred CCCCCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhC
Q 002352 593 NEDFRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKS 672 (932)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~ 672 (932)
|++++||.+.
T Consensus 117 ----------------------------------------------------------------------i~~~~dL~~~ 126 (265)
T 2v3u_A 117 ----------------------------------------------------------------------IQSLQDLSKQ 126 (265)
T ss_dssp ----------------------------------------------------------------------CCSHHHHHTC
T ss_pred ----------------------------------------------------------------------ccchhhhhhh
Confidence 7889999821
Q ss_pred -CCcEEEEcChhHHHHHHhcCCCcc------------------cccccCCHHHHHHHhhcccCCCceeEEEecccccccc
Q 002352 673 -GDNVGYRKDSFVFGILKQLGFDEK------------------KLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPF 733 (932)
Q Consensus 673 -~~~vg~~~~s~~~~~l~~~~~~~~------------------~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~ 733 (932)
+...|...++....++++.+.... ++..+.+.++++++|.+|+ + |++.+...+.++
T Consensus 127 v~v~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~G~----~-a~~~~~~~~~~~ 201 (265)
T 2v3u_A 127 TDIPYGTVLDSAVYQHVRMKGLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKYGN----Y-AFVWDAAVLEYV 201 (265)
T ss_dssp SSSCEECBTTSHHHHHHHHHHTCTTCSCTHHHHHHHHHCC-----CCBSSHHHHHHHHHHSS----C-EEEEEHHHHHHH
T ss_pred hcEEEEEeccHHHHHHHHhcCCCcccccHHHHHHHHHHHhhcCcccccCCHHHHHHHHHcCC----E-EEEEcchHHHHH
Confidence 224566666666777765433211 2346789999999999999 8 888888888888
Q ss_pred cccC--CcceEEecccccccceEEEecCCCCChHHHHHHHHhhhccchHHHHHHHhccCCCCCC
Q 002352 734 IGQY--CSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASCP 795 (932)
Q Consensus 734 ~~~~--~~~l~~~~~~~~~~~~~~~~~k~s~l~~~in~~il~l~e~G~~~~~~~~~~~~~~~~~ 795 (932)
++++ |. +.+++..+...+++++++|+++|++.||++|.+|.++|.+++|.++|++....|.
T Consensus 202 ~~~~~~~~-l~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~kw~~~~~~c~ 264 (265)
T 2v3u_A 202 AINDPDCS-FYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKNGQCD 264 (265)
T ss_dssp HHHCTTCC-EEEEC---CCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHCCCCCC--
T ss_pred HhcCCCcc-EEEeccccCCcceEEEEeCCCccHHHHHHHHHHHhhCChHHHHHhhcCCCcCcCC
Confidence 7654 54 8888888888889999999999999999999999999999999999999888885
No 46
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.87 E-value=7.2e-22 Score=207.11 Aligned_cols=225 Identities=18% Similarity=0.383 Sum_probs=193.2
Q ss_pred CCCCCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHH
Q 002352 434 PTNKRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVF 513 (932)
Q Consensus 434 ~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~ 513 (932)
+...++|+|++. +.|+||.+. . ++++.|+++||++++++++|++ +++++.. |..++.+|.
T Consensus 20 ~~~~~~l~v~~~--~~~~P~~~~-~------~g~~~G~~~dl~~~i~~~~g~~--~~~~~~~---------~~~~~~~l~ 79 (249)
T 4f3p_A 20 GSMAKELVVGTD--TSFMPFEFK-Q------GDKYVGFDLDLWAEIAKGAGWT--YKIQPMD---------FAGLIPALQ 79 (249)
T ss_dssp ----CCEEEEEE--SCBTTTBEE-E------TTEEESHHHHHHHHHHHHHTCC--EEEEEEC---------GGGHHHHHH
T ss_pred cccCceEEEEeC--CCCCCeEEe-c------CCeEEEEhHHHHHHHHHHcCCc--eEEEecC---------HHHHHHHHH
Confidence 345778999996 456667765 3 7789999999999999999965 5555543 899999999
Q ss_pred cCcccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccC
Q 002352 514 RGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVN 593 (932)
Q Consensus 514 ~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~ 593 (932)
+|++|++++++..+++|.+.+.||.||+....++++++...
T Consensus 80 ~g~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~--------------------------------------- 120 (249)
T 4f3p_A 80 TQNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNT--------------------------------------- 120 (249)
T ss_dssp TTSCSEEEEEEECCHHHHTTEEECSCCEEEEEEEEEETTCC---------------------------------------
T ss_pred CCCCCEEEeccccCHHHHcCcceecceeeccEEEEEECCCC---------------------------------------
Confidence 99999999999999999999999999999999999986632
Q ss_pred CCCCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCC
Q 002352 594 EDFRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSG 673 (932)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~ 673 (932)
.+++++||. |
T Consensus 121 --------------------------------------------------------------------~i~~~~dL~--g 130 (249)
T 4f3p_A 121 --------------------------------------------------------------------TIKSIDDLN--G 130 (249)
T ss_dssp --------------------------------------------------------------------SCCSSGGGT--T
T ss_pred --------------------------------------------------------------------CcCChHHhC--C
Confidence 278999998 9
Q ss_pred CcEEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccC-CcceEEecccccccc
Q 002352 674 DNVGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQY-CSKYTLIERTFETAG 752 (932)
Q Consensus 674 ~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~ 752 (932)
++||+..|+....++++. .+..++..+++.++++++|.+|+ +|+++.+...+.+++++. ...+.++...+....
T Consensus 131 ~~i~v~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 205 (249)
T 4f3p_A 131 KVIAAKTGTATIDWIKAH-LKPKEIRQFPNIDQAYLALEAGR----VDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDK 205 (249)
T ss_dssp SEEEEETTSHHHHHHHHH-CCCSEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEE
T ss_pred CEEEEeCCChHHHHHHhc-CCCceEEEcCCHHHHHHHHHcCC----eeEEEeCcHHHHHHHHhCCCCceEEecCCCCCcc
Confidence 999999999988888874 35567888999999999999999 999999999999988876 345778888888889
Q ss_pred eEEEecCCCCChHHHHHHHHhhhccchHHHHHHHhccCCC
Q 002352 753 FGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRA 792 (932)
Q Consensus 753 ~~~~~~k~s~l~~~in~~il~l~e~G~~~~~~~~~~~~~~ 792 (932)
++++++|++++.+.||++|.++.++|.++++.++|++...
T Consensus 206 ~~~~~~k~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~ 245 (249)
T 4f3p_A 206 YGIGFPKGSPLVAKVNAELARMKADGRYAKIYKKWFGSEP 245 (249)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHTHHHHHHHHHHSSCC
T ss_pred EEEEEcCCchHHHHHHHHHHHHHhCCcHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999997543
No 47
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.87 E-value=4.1e-22 Score=208.40 Aligned_cols=229 Identities=19% Similarity=0.329 Sum_probs=197.6
Q ss_pred CCCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcC
Q 002352 436 NKRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRG 515 (932)
Q Consensus 436 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g 515 (932)
+.++|+|++. +.|+||.+.+. ++++.|+++|+++++++++|+ ++++++.. |..++.+|.+|
T Consensus 3 ~~~~l~v~~~--~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~g~--~~~~~~~~---------~~~~~~~l~~g 63 (245)
T 3k4u_A 3 LRGELRVGLE--PGYLPFEMKDK------KGNVIGFDVDLAREMAKAMGV--KLKLVPTS---------WDGLIPGLVTE 63 (245)
T ss_dssp CCSEEEEEEC--TTSTTTCEEET------TTEEESHHHHHHHHHHHHHTC--EEEEEECC---------GGGHHHHHHTT
T ss_pred cCCeEEEEEC--CCcCCeeEECC------CCCCccchHHHHHHHHHHhCC--eEEEEEcc---------HHHHHHHHhCC
Confidence 3578999996 56777777654 678999999999999999995 46666643 89999999999
Q ss_pred cccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 002352 516 KFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNED 595 (932)
Q Consensus 516 ~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~~ 595 (932)
++|+++++++.+++|.+.+.||.||+....++++++....
T Consensus 64 ~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~---------------------------------------- 103 (245)
T 3k4u_A 64 KFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEK---------------------------------------- 103 (245)
T ss_dssp SCSEECSSCBCCHHHHTTSEECSCSEEECEEEEEETTTTT----------------------------------------
T ss_pred CcCEEEecCcCCHHHHhhcCcchhhheeceEEEEECCccc----------------------------------------
Confidence 9999988899999999999999999999999999876322
Q ss_pred CCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCCc
Q 002352 596 FRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGDN 675 (932)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~ 675 (932)
.+++++||.+.|++
T Consensus 104 ------------------------------------------------------------------~i~~~~dL~~~g~~ 117 (245)
T 3k4u_A 104 ------------------------------------------------------------------GVKSYKDLDKPELT 117 (245)
T ss_dssp ------------------------------------------------------------------TCCSGGGGCCSSCE
T ss_pred ------------------------------------------------------------------ccCCHHHhccCCcE
Confidence 27899999877889
Q ss_pred EEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCC-cceEEecccccccceE
Q 002352 676 VGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYC-SKYTLIERTFETAGFG 754 (932)
Q Consensus 676 vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~ 754 (932)
||+..|+....++.+. .+..++..+++.++++++|.+|+ +|+++.+...+.+++++.. ..+..+...+...+++
T Consensus 118 i~v~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (245)
T 3k4u_A 118 LVTKFGVSAEYAAKRL-FKNAKLKTYDTEAEAVQEVLNGK----ADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLG 192 (245)
T ss_dssp EEEETTSHHHHHHHHH-CSSSEEEEESSHHHHHHHHHSSS----SEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEEC
T ss_pred EEEeCCcHHHHHHHhh-CCcCCEEEeCCHHHHHHHHHcCC----CcEEEEcHHHHHHHHhcCCccceeecCCCcccccEE
Confidence 9999999999988874 45567889999999999999999 9999999988888877663 4577778888888999
Q ss_pred EEecCCCC-ChHHHHHHHHhhhccchHHHHHHHhccCCCCC
Q 002352 755 FAFPLHSP-LVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794 (932)
Q Consensus 755 ~~~~k~s~-l~~~in~~il~l~e~G~~~~~~~~~~~~~~~~ 794 (932)
++++|++| ++..||++|.++.++|.++++.++|++...-+
T Consensus 193 ~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~~~~ 233 (245)
T 3k4u_A 193 WAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTKWL 233 (245)
T ss_dssp CEECTTCHHHHHHHHHHHHHHHHHSHHHHHHHHHHTCCSGG
T ss_pred EEEcCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhcCccccc
Confidence 99999887 99999999999999999999999999865443
No 48
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.87 E-value=7.5e-22 Score=208.83 Aligned_cols=236 Identities=17% Similarity=0.295 Sum_probs=186.0
Q ss_pred CCcEEEEeecccCcccceEEEec--CCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccC-CCC--CCCC-CHHHHHH
Q 002352 437 KRKLRIGVPVTKGFSDFVKVTID--PNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQ-PDG--TSSG-SYNDLMY 510 (932)
Q Consensus 437 ~~~l~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~-~~g--~~ng-s~~~li~ 510 (932)
+++|+|++.. |+||.+.+.+ +..+ ++++.||++||++++++++|++ ++++.... ..| ..++ +|++++.
T Consensus 3 ~~~l~v~~~~---~pP~~~~~~~~~~~~~-~g~~~G~~~dl~~~ia~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~~ 76 (263)
T 1mqi_A 3 NKTVVVTTIL---ESPYVMMKKNHEMLEG-NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVG 76 (263)
T ss_dssp CCCEEEEECC---BTTTBEECTTGGGCCG-GGGEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCBCTTTCCBCHHHH
T ss_pred CeEEEEEEec---CCCcEEEecCcccccC-CCceeeeHHHHHHHHHHHcCce--EEEEEccccccCccCCCCCCcHHHHH
Confidence 5789999975 4566765431 1111 4789999999999999999965 56665421 111 1222 7999999
Q ss_pred HHHcCcccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhc
Q 002352 511 QVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEH 590 (932)
Q Consensus 511 ~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~ 590 (932)
+|.+|++|++++++++|++|.+.++||.||+..+.++++++..+
T Consensus 77 ~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------ 120 (263)
T 1mqi_A 77 ELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTP------------------------------------ 120 (263)
T ss_dssp HHHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCS------------------------------------
T ss_pred HHHcCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCccc------------------------------------
Confidence 99999999999889999999999999999999999999986531
Q ss_pred ccCCCCCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHH
Q 002352 591 RVNEDFRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLI 670 (932)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~ 670 (932)
+++++||.
T Consensus 121 ------------------------------------------------------------------------i~~~~dL~ 128 (263)
T 1mqi_A 121 ------------------------------------------------------------------------IESAEDLS 128 (263)
T ss_dssp ------------------------------------------------------------------------CCSHHHHH
T ss_pred ------------------------------------------------------------------------cCCHHHHh
Confidence 78999998
Q ss_pred hCCCc---EEEE-cChhHHHHHHhcCCC-----------cccccccCCHHHHHHHh--hcccCCCceeEEEecccccccc
Q 002352 671 KSGDN---VGYR-KDSFVFGILKQLGFD-----------EKKLIAYSSPEECDELF--QKGSAGGGIAAAFDEIPYTKPF 733 (932)
Q Consensus 671 ~~~~~---vg~~-~~s~~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~l--~~g~~~~g~~a~~~~~~~~~~~ 733 (932)
|++ +|+. .++. ...+.+.... ...+..+.+.++++++| .+|+ +|++.+...+.++
T Consensus 129 --g~~~~~ig~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-----da~~~~~~~~~~~ 200 (263)
T 1mqi_A 129 --KQTEIAYGTLDSGST-KEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGK-----YAYLLESTMNEYI 200 (263)
T ss_dssp --TCSSSEEECBSSSHH-HHHHHHCCSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHHTTTS-----EEEEEEHHHHHHH
T ss_pred --cccCeeEEEEeccHH-HHHHHhccchhHHHHHHHHhhCCCceecCCHHHHHHHHhhcCCc-----EEEEechHHHHHH
Confidence 776 5754 4554 4444443221 12456788999999999 7777 5888888888888
Q ss_pred cccC-CcceEEecccccccceEEEecCCCCChHHHHHHHHhhhccchHHHHHHHhccCCCCCC
Q 002352 734 IGQY-CSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASCP 795 (932)
Q Consensus 734 ~~~~-~~~l~~~~~~~~~~~~~~~~~k~s~l~~~in~~il~l~e~G~~~~~~~~~~~~~~~~~ 795 (932)
+++. |+ +.++++.+....++++++|+++|++.||++|.+|.++|.+++|.+||+.....|+
T Consensus 201 ~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~k~~~~~~~C~ 262 (263)
T 1mqi_A 201 EQRKPCD-TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECG 262 (263)
T ss_dssp TTSTTCC-EEEESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHTTTCSCC
T ss_pred HhcCCCc-eEEcCCcccccceEEEEeCCCccHHHHHHHHHHHHhcccHHHHHHHHcCCCCCCC
Confidence 8776 54 7778777888889999999999999999999999999999999999999888896
No 49
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.87 E-value=4.2e-22 Score=207.20 Aligned_cols=224 Identities=20% Similarity=0.318 Sum_probs=188.8
Q ss_pred CCcEEEEeecccCcccceEE-EecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcC
Q 002352 437 KRKLRIGVPVTKGFSDFVKV-TIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRG 515 (932)
Q Consensus 437 ~~~l~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g 515 (932)
.++|+||+. +.|+||.+. +. ++++.|+++|+++++++++|++ +++++.. |..++.+|.+|
T Consensus 2 ~~~l~v~~~--~~~~P~~~~~~~------~g~~~G~~~dl~~~i~~~~g~~--~~~~~~~---------~~~~~~~l~~g 62 (237)
T 3kzg_A 2 SLNLTIGTS--KFNPPFEVWSGN------NSSLYGFDIDLMQEICRRLHAT--CTFEAYI---------FDDLFPALKNR 62 (237)
T ss_dssp CCEEEEEEE--SEETTTEECCCT------TSCCBSHHHHHHHHHHHHTTCE--EEEEEEC---------GGGHHHHHHTT
T ss_pred CceEEEEEC--CCCCCeEEEeCC------CCCEeeehHHHHHHHHHHhCCc--eEEEEcC---------HHHHHHHHhCC
Confidence 367999996 346677775 32 6789999999999999999965 5555543 89999999999
Q ss_pred cccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 002352 516 KFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNED 595 (932)
Q Consensus 516 ~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~~ 595 (932)
++|+++++++.+++|.+.++||.||+....++++++...
T Consensus 63 ~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~~----------------------------------------- 101 (237)
T 3kzg_A 63 EVDLVIASMIITDERKKHFIFSLPYMESNSQYITTVDSK----------------------------------------- 101 (237)
T ss_dssp SSSEECSSCBCCTTGGGTCEECCCSBCCEEEEEEETTCS-----------------------------------------
T ss_pred CCCEEEEccccChhHhccceeeeeeeecceEEEEECCCC-----------------------------------------
Confidence 999999999999999999999999999999999986531
Q ss_pred CCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCCc
Q 002352 596 FRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGDN 675 (932)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~ 675 (932)
+++++||. |++
T Consensus 102 -------------------------------------------------------------------~~~~~dL~--g~~ 112 (237)
T 3kzg_A 102 -------------------------------------------------------------------ISTFDDLH--GKK 112 (237)
T ss_dssp -------------------------------------------------------------------CCSGGGGT--TCE
T ss_pred -------------------------------------------------------------------CCCHHHhC--CCE
Confidence 68999998 999
Q ss_pred EEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCC------c-ceEEecccc
Q 002352 676 VGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYC------S-KYTLIERTF 748 (932)
Q Consensus 676 vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~------~-~l~~~~~~~ 748 (932)
||+..|+.....+.+. .+..++..+.+.++++++|.+|+ +|+++.+...+.++++++. . .+.+++..+
T Consensus 113 i~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 187 (237)
T 3kzg_A 113 IGVRKGTPYARQVLSE-NRNNQVIFYELIQDMLLGLSNNQ----VDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKI 187 (237)
T ss_dssp EEEETTSTHHHHHHHT-CSSCEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEE
T ss_pred EEEecCCHHHHHHHHh-CCCCcEEEeCCHHHHHHHHHcCC----CCEEEeCcHHHHHHHHhCCccccccCCceEEecCcc
Confidence 9999999877777664 44567888999999999999999 9999999999999888754 2 588888777
Q ss_pred -cccceEEEecCCC-CChHHHHHHHHhhhccchHHHHHHHhccCCCCC
Q 002352 749 -ETAGFGFAFPLHS-PLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794 (932)
Q Consensus 749 -~~~~~~~~~~k~s-~l~~~in~~il~l~e~G~~~~~~~~~~~~~~~~ 794 (932)
...+++++++|++ .++..||++|.++.++|.+++|.+||+.....|
T Consensus 188 ~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~G~~~~i~~k~~~~~~~~ 235 (237)
T 3kzg_A 188 SIGEGYSIMANPDQFVLIKKINKILLEMEADGTYLRLYSEYFEGHHHH 235 (237)
T ss_dssp ECTTCBCCEECGGGHHHHHHHHHHHHHHHHSSHHHHHHHHHC------
T ss_pred ccCccEEEEEcCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHhCccccc
Confidence 8888999999985 599999999999999999999999999765554
No 50
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.87 E-value=5e-22 Score=205.93 Aligned_cols=221 Identities=17% Similarity=0.337 Sum_probs=185.8
Q ss_pred CCCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcC
Q 002352 436 NKRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRG 515 (932)
Q Consensus 436 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g 515 (932)
..++|+|++. +.|+||.+.+. ++++.|+++||++++++++|++ ++++... |.+++.+|.+|
T Consensus 3 ~a~~l~v~~~--~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~g~~--~~~~~~~---------~~~~~~~l~~g 63 (232)
T 3i6v_A 3 LADTVRMGTE--GAYPPYNFIND------AGEVDGFERELGDELCKRAGLT--CEWVKND---------WDSIIPNLVSG 63 (232)
T ss_dssp ---CEEEEEC--SEETTTEEECT------TSCEESHHHHHHHHHHHHHTCC--EEEEECC---------GGGHHHHHHTT
T ss_pred CCCEEEEEEC--CCCCCeeEECC------CCCEeeehHHHHHHHHHHcCCc--eEEEECC---------HHHHHHHHHCC
Confidence 3578999985 45667777653 6789999999999999999965 6666643 99999999999
Q ss_pred cccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 002352 516 KFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNED 595 (932)
Q Consensus 516 ~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~~ 595 (932)
++|+++++++.|++|.+.++||.||+..+.++++++..
T Consensus 64 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------ 101 (232)
T 3i6v_A 64 NYDTIIAGMSITDERDEVIDFTQNYIPPTASSYVATSD------------------------------------------ 101 (232)
T ss_dssp SCSEECSSCBCCHHHHTTSEEEEEEECCCEEEEEESST------------------------------------------
T ss_pred CCCEEEeCCcCCHHHHhhcCcccccccCCeEEEEECCC------------------------------------------
Confidence 99999999999999999999999999999999997551
Q ss_pred CCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCCc
Q 002352 596 FRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGDN 675 (932)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~ 675 (932)
++||. | +
T Consensus 102 ----------------------------------------------------------------------~~dL~--g-~ 108 (232)
T 3i6v_A 102 ----------------------------------------------------------------------GADLS--G-I 108 (232)
T ss_dssp ----------------------------------------------------------------------TCCTT--S-E
T ss_pred ----------------------------------------------------------------------hHHhC--C-C
Confidence 45676 8 9
Q ss_pred EEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCCcceEEecc-cccccceE
Q 002352 676 VGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYCSKYTLIER-TFETAGFG 754 (932)
Q Consensus 676 vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ 754 (932)
||+..|+....++++. ..++..+++.++++++|.+|+ +|+++.+...+.+++++...++.++.. .+...+++
T Consensus 109 igv~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (232)
T 3i6v_A 109 VAAQTATIQAGYIAES---GATLVEFATPEETIAAVRNGE----ADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVG 181 (232)
T ss_dssp EEEETTSHHHHHHHHS---SSEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEE
T ss_pred EEEecCchHHHHHHhc---CCeEEEeCCHHHHHHHHHcCC----cCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEE
Confidence 9999999999999886 357788999999999999999 999999999999998887334777765 45677899
Q ss_pred EEecCCCC-ChHHHHHHHHhhhccchHHHHHHHhccCCCCCCCC
Q 002352 755 FAFPLHSP-LVPEVSRAILNVTEGNKMKEIEDEWFKKRASCPDA 797 (932)
Q Consensus 755 ~~~~k~s~-l~~~in~~il~l~e~G~~~~~~~~~~~~~~~~~~~ 797 (932)
++++|+++ ++..||++|.++.++|.++++.+||++....|...
T Consensus 182 ~~~~k~~~~l~~~ln~~l~~l~~~G~~~~i~~k~~~~~~~~~~~ 225 (232)
T 3i6v_A 182 MGLRESDGELRGKFDAAITSMKEDGTLNTMIKKWFGEDAAVYEE 225 (232)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHHTSHHHHHHHHHHCTTSCCC--
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHCChHHHHHHHHcCCCCCcccc
Confidence 99999875 99999999999999999999999999866555443
No 51
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.86 E-value=2.3e-21 Score=202.13 Aligned_cols=222 Identities=16% Similarity=0.279 Sum_probs=191.8
Q ss_pred CCCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcC
Q 002352 436 NKRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRG 515 (932)
Q Consensus 436 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g 515 (932)
..++|+|++ .+.|+||.+.+. ++++.|+++|+++++++++|+ ++++++.. |..++.+|.+|
T Consensus 9 ~~~~l~v~~--~~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~g~--~~~~~~~~---------~~~~~~~l~~g 69 (242)
T 3del_B 9 NSEKFIVGT--NATYPPFEFVDK------RGEVVGFDIDLAREISNKLGK--TLDVREFS---------FDALILNLKQH 69 (242)
T ss_dssp --CEEEEEE--CSCBTTTBEECT------TSCEESHHHHHHHHHHHHHTC--EEEEEECC---------GGGHHHHHHTT
T ss_pred cCCcEEEEe--CCCCCCeeEECC------CCCEEEeeHHHHHHHHHHcCC--ceEEEEcC---------HHHHHHHHhCC
Confidence 356799999 455677777643 678999999999999999995 56666643 89999999999
Q ss_pred cccEEEeeeeeecccccccccccccc--ccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccC
Q 002352 516 KFDAVVGDTTILANRSKFVEFTLPYT--ESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVN 593 (932)
Q Consensus 516 ~~D~~~~~~~it~~R~~~vdfs~p~~--~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~ 593 (932)
++|++++++..+++|.+.++| .||+ ..+.++++++..
T Consensus 70 ~~D~~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~---------------------------------------- 108 (242)
T 3del_B 70 RIDAVITGMSITPSRLKEILM-IPYYGEEIKHLVLVFKGE---------------------------------------- 108 (242)
T ss_dssp SSSEECSSBBCCHHHHTTEEE-EEEEEEEESEEEEEEESC----------------------------------------
T ss_pred CcCEEEecCcCCHHHHhcccc-eeeeecCCceEEEEeCCC----------------------------------------
Confidence 999998889999999999999 9999 899999998662
Q ss_pred CCCCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCC
Q 002352 594 EDFRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSG 673 (932)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~ 673 (932)
.+++++||. |
T Consensus 109 --------------------------------------------------------------------~i~~~~dL~--g 118 (242)
T 3del_B 109 --------------------------------------------------------------------NKHPLPLTQ--Y 118 (242)
T ss_dssp --------------------------------------------------------------------CSCCCCGGG--S
T ss_pred --------------------------------------------------------------------CCCCHHHhC--C
Confidence 178899998 9
Q ss_pred CcEEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCCcceEEecccccccc-
Q 002352 674 DNVGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYCSKYTLIERTFETAG- 752 (932)
Q Consensus 674 ~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 752 (932)
++||+..|+....++.+ .+..+++.+++.++++++|.+|+ +|+++.+...+.++++++.. +.++...+....
T Consensus 119 ~~i~v~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~L~~g~----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 191 (242)
T 3del_B 119 RSVAVQTGTYQEAYLQS--LSEVHIRSFDSTLEVLMEVMHGK----SPVAVLEPSIAQVVLKDFPA-LSTATIDLPEDQW 191 (242)
T ss_dssp SCEEEETTSHHHHHHHH--STTCCEEEESSHHHHHHHHHTTS----SSEEEECHHHHHHHGGGCTT-EEEEEEECCGGGC
T ss_pred CEEEEEcCcHHHHHHHh--CCCceEEEECCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhCCC-eEEecCccCcccc
Confidence 99999999999999887 45567888999999999999999 99999999999999988765 778877777777
Q ss_pred ---eEEEecCCCC-ChHHHHHHHHhhhccchHHHHHHHhccCCCCC
Q 002352 753 ---FGFAFPLHSP-LVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794 (932)
Q Consensus 753 ---~~~~~~k~s~-l~~~in~~il~l~e~G~~~~~~~~~~~~~~~~ 794 (932)
++++++|+++ +++.||++|.++.++|.+++|.+||+...+.+
T Consensus 192 ~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~~~ 237 (242)
T 3del_B 192 VLGYGIGVASDRPALALKIEAAVQEIRKEGVLAELEQKWGLNNLEH 237 (242)
T ss_dssp EEEEEEEEETTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTGGGCSS
T ss_pred cceEEEEEeCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHCCCCCcc
Confidence 9999999876 99999999999999999999999999865443
No 52
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.86 E-value=2.1e-21 Score=205.96 Aligned_cols=222 Identities=15% Similarity=0.297 Sum_probs=192.2
Q ss_pred CCCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcC
Q 002352 436 NKRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRG 515 (932)
Q Consensus 436 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g 515 (932)
..++|+||+. +.|+||.+.+. ++++.|+++|+++.+++++|+ ++++++.. |..++.+|.+|
T Consensus 19 ~~~~l~v~~~--~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~g~--~~~~~~~~---------~~~~~~~l~~g 79 (268)
T 3hv1_A 19 KEKKIKIGFD--ATFVPMGYEEK------DGSYIGFDIDLANAVFKLYGI--DVEWQAID---------WDMKETELKNG 79 (268)
T ss_dssp HHTEEEEEEC--TEETTTEEECT------TSCEECHHHHHHHHHHHTTTC--EEEEEECC---------GGGHHHHHHHT
T ss_pred cCCcEEEEEC--CCCCCceEECC------CCCEEEehHHHHHHHHHHhCC--cEEEEECC---------HHHHHHHHHCC
Confidence 3567999995 35667777653 678999999999999999995 46666643 89999999999
Q ss_pred cccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 002352 516 KFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNED 595 (932)
Q Consensus 516 ~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~~ 595 (932)
++|++++++..+++|.+.+.||.||+....++++++.. .
T Consensus 80 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~--~--------------------------------------- 118 (268)
T 3hv1_A 80 TIDLIWNGYSVTDERKQSADFTEPYMVNEQVLVTKKSS--G--------------------------------------- 118 (268)
T ss_dssp SCSEECSSCBCCHHHHTTCEECCCCEEECEEEEEEGGG--C---------------------------------------
T ss_pred CCCEEEecCccCHHHHhcCcCcHHHeeCceEEEEECCC--C---------------------------------------
Confidence 99999888999999999999999999999999998763 1
Q ss_pred CCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCCc
Q 002352 596 FRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGDN 675 (932)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~ 675 (932)
|++++||. |++
T Consensus 119 -------------------------------------------------------------------i~~~~dL~--g~~ 129 (268)
T 3hv1_A 119 -------------------------------------------------------------------IDSVAGMA--GKT 129 (268)
T ss_dssp -------------------------------------------------------------------CCSSGGGT--TCC
T ss_pred -------------------------------------------------------------------CCCHHHhC--CCE
Confidence 78999998 999
Q ss_pred EEEEcChhHHHHHHhcC------CCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCC--cceEEeccc
Q 002352 676 VGYRKDSFVFGILKQLG------FDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYC--SKYTLIERT 747 (932)
Q Consensus 676 vg~~~~s~~~~~l~~~~------~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~--~~l~~~~~~ 747 (932)
||+..|+....++.+.. .+..++..+++.++++++|.+|+ +|+++.+...+.+++++.. ..+.+++..
T Consensus 130 i~v~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (268)
T 3hv1_A 130 LGAQAGSSGYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGR----IDGLLIDRVYANYYLEKSGVLDQYNVMPAG 205 (268)
T ss_dssp EEEETTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTS----CSEEEEEHHHHHHHHHHTTCGGGEEEEECS
T ss_pred EEEEeCCchHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCC----CCEEEeCHHHHHHHHHhCCCCCceEECCCC
Confidence 99999999988887643 23356778899999999999999 9999999999998888763 558888887
Q ss_pred ccccceEEEecCCCC-ChHHHHHHHHhhhccchHHHHHHHhccC
Q 002352 748 FETAGFGFAFPLHSP-LVPEVSRAILNVTEGNKMKEIEDEWFKK 790 (932)
Q Consensus 748 ~~~~~~~~~~~k~s~-l~~~in~~il~l~e~G~~~~~~~~~~~~ 790 (932)
+...+++++++|+++ ++..||++|.++.++|.++++.++|++.
T Consensus 206 ~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~ 249 (268)
T 3hv1_A 206 YEGESFAVGARKVDKTLIKKINQGFETLYKNGEFQKISNKWFGE 249 (268)
T ss_dssp SCCEEECCEECTTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHSS
T ss_pred CCCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHhcCC
Confidence 888889999999875 9999999999999999999999999975
No 53
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.86 E-value=7e-22 Score=205.71 Aligned_cols=223 Identities=12% Similarity=0.210 Sum_probs=189.9
Q ss_pred CCCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcC
Q 002352 436 NKRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRG 515 (932)
Q Consensus 436 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g 515 (932)
..++|+||+. +.|+||.+.+. ++++.|+++|+++++++++|+ ++++++.. |..++.+|.+|
T Consensus 13 ~~~~l~v~~~--~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~g~--~~~~~~~~---------~~~~~~~l~~g 73 (239)
T 3kbr_A 13 ESGVLRVATT--GDYKPFSYRTE------EGGYAGFDVDMAQRLAESLGA--KLVVVPTS---------WPNLMRDFADD 73 (239)
T ss_dssp HHTEEEEEEC--SEETTTEEECT------TSCEESHHHHHHHHHHHHTTC--EEEEEECC---------TTTHHHHHHTT
T ss_pred hCCeEEEEEC--CCCCCeeEECC------CCCEEeehHHHHHHHHHHHCC--ceEEEEeC---------HHHHHHHHHCC
Confidence 3567999994 44667777653 678999999999999999995 46666643 88999999999
Q ss_pred cccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 002352 516 KFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNED 595 (932)
Q Consensus 516 ~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~~ 595 (932)
++|+++++++.+++|.+.++||.||+..+.++++++.....
T Consensus 74 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~--------------------------------------- 114 (239)
T 3kbr_A 74 RFDIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSEEAR--------------------------------------- 114 (239)
T ss_dssp CCSEECSSCBCCHHHHTTCEECSCSEEECEEEEEEGGGGGG---------------------------------------
T ss_pred CcCEEEeCCcCCHHHcCccccchHHhccCcEEEEECCcccc---------------------------------------
Confidence 99999889999999999999999999999999998764321
Q ss_pred CCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCCc
Q 002352 596 FRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGDN 675 (932)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~ 675 (932)
+++++||...|++
T Consensus 115 -------------------------------------------------------------------i~~~~dL~~~g~~ 127 (239)
T 3kbr_A 115 -------------------------------------------------------------------FQTLEQIDQPGVT 127 (239)
T ss_dssp -------------------------------------------------------------------GSSHHHHSSTTCE
T ss_pred -------------------------------------------------------------------cCCHHHhcCCCcE
Confidence 7899999876789
Q ss_pred EEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCCcceEEec--ccccccce
Q 002352 676 VGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYCSKYTLIE--RTFETAGF 753 (932)
Q Consensus 676 vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~ 753 (932)
+|+..|+....++++. .+..++..+++.++++++|.+|+ +|+++.+...+.++++++.. +.++. ..+...++
T Consensus 128 v~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~gr----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 201 (239)
T 3kbr_A 128 AIVNPGGTNEKFARAN-LKKARILVHPDNVTIFQQIVDGK----ADLMMTDAIEARLQSRLHPE-LCAVHPQQPFDFAEK 201 (239)
T ss_dssp EEECTTSHHHHHHHHH-CSSSEEEECCCTTTHHHHHHTTS----CSEEEEEHHHHHHHHHHCTT-EEECCCC-CCCCEEE
T ss_pred EEEcCCCcHHHHHHHh-CCCCceEEeCCHHHHHHHHHcCC----cCEEEEchHHHHHHHHhCCC-cEEecCCCCccccce
Confidence 9999999999988874 45667888999999999999999 99999999999998887754 55554 44677788
Q ss_pred EEEecCCCCChHHHHHHHHhhhccchHHHHHHHhcc
Q 002352 754 GFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFK 789 (932)
Q Consensus 754 ~~~~~k~s~l~~~in~~il~l~e~G~~~~~~~~~~~ 789 (932)
+++++|+..++..||++|.++.++|.++++.++|++
T Consensus 202 ~~~~~k~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~ 237 (239)
T 3kbr_A 202 AYLLPRDEAFKRYVDQWLHIAEQSGLLRQRMEHWLE 237 (239)
T ss_dssp CCEECSCHHHHHHHHHHHHHHHHHTHHHHHHHHHC-
T ss_pred EEEEcCCHHHHHHHHHHHHHHHHCCcHHHHHHHHhc
Confidence 999999666999999999999999999999999996
No 54
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.85 E-value=9.5e-21 Score=196.06 Aligned_cols=220 Identities=21% Similarity=0.313 Sum_probs=187.5
Q ss_pred CCcEEEEeecccCcccceEE--EecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHc
Q 002352 437 KRKLRIGVPVTKGFSDFVKV--TIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFR 514 (932)
Q Consensus 437 ~~~l~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~ 514 (932)
.++|+||+.. |+||.+. +. ++++.|+++|+++.+++++|+ +++++... +|..++.+|.+
T Consensus 3 ~~~l~v~~~~---~~P~~~~~~~~------~g~~~G~~~dl~~~i~~~~g~--~~~~~~~~--------~~~~~~~~l~~ 63 (233)
T 1ii5_A 3 AMALKVGVVG---NPPFVFYGEGK------NAAFTGISLDVWRAVAESQKW--NSEYVRQN--------SISAGITAVAE 63 (233)
T ss_dssp SCCEEEEECC---CTTTCEEC-----------CEESHHHHHHHHHHHHHTC--CEEEEECS--------CHHHHHHHHHT
T ss_pred CceEEEEecC---CCCeEEEecCC------CCCEEEEeHHHHHHHHHHcCC--cEEEEEeC--------CHHHHHHHHHC
Confidence 4679999963 5677776 32 678999999999999999995 46666652 49999999999
Q ss_pred CcccEEEeeeeeecccc--ccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhccc
Q 002352 515 GKFDAVVGDTTILANRS--KFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRV 592 (932)
Q Consensus 515 g~~D~~~~~~~it~~R~--~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~ 592 (932)
|++|++++++..+++|. +.+.||.||+....++++++....
T Consensus 64 g~~D~~~~~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~~------------------------------------- 106 (233)
T 1ii5_A 64 GELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIPGTATP------------------------------------- 106 (233)
T ss_dssp TSCSEEEEEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGTT-------------------------------------
T ss_pred CCcCEEEeeeecCccccccceeEEccceeecCeEEEEECCCCC-------------------------------------
Confidence 99999998899999999 999999999999999999876421
Q ss_pred CCCCCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhC
Q 002352 593 NEDFRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKS 672 (932)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~ 672 (932)
.+++++||.
T Consensus 107 ---------------------------------------------------------------------~i~~~~dL~-- 115 (233)
T 1ii5_A 107 ---------------------------------------------------------------------LFRSVGDLK-- 115 (233)
T ss_dssp ---------------------------------------------------------------------TCSSGGGGT--
T ss_pred ---------------------------------------------------------------------CCCCHHHhC--
Confidence 278999998
Q ss_pred CCcEEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCC-cceEEeccccccc
Q 002352 673 GDNVGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYC-SKYTLIERTFETA 751 (932)
Q Consensus 673 ~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~ 751 (932)
|+++|+..|+....++++.+ .++..+.+.++++++|.+|+ +|+++.+...+.+++++.. ..+.+++..+...
T Consensus 116 g~~v~~~~g~~~~~~l~~~~---~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (233)
T 1ii5_A 116 NKEVAVVRDTTAVDWANFYQ---ADVRETNNLTAAITLLQKKQ----VEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLE 188 (233)
T ss_dssp TCEEEEETTSHHHHHHHHTT---CEEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEE
T ss_pred CCeEEEECCccHHHHHHHcC---CCeEEcCCHHHHHHHHHcCC----ccEEEeCHHHHHHHHHhCCCCcEEEeCcccccc
Confidence 99999999999988888753 36678899999999999999 9999999988888887763 3577777777778
Q ss_pred ceEEEecCCCCChHHHHHHHHhhhccchHHHHHHHhccC
Q 002352 752 GFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKK 790 (932)
Q Consensus 752 ~~~~~~~k~s~l~~~in~~il~l~e~G~~~~~~~~~~~~ 790 (932)
.++++++|++++...+|++|.++.++|.++++.+||+..
T Consensus 189 ~~~~~~~k~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~ 227 (233)
T 1ii5_A 189 PYGFVLKENSPLQKTINVEMLNLLYSRVIAEFTERWLGP 227 (233)
T ss_dssp EEEEEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHC-
T ss_pred ceEEEEcCCchHHHHHHHHHHHHHhCCcHHHHHHHHcCC
Confidence 899999999999999999999999999999999999964
No 55
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.85 E-value=7.2e-21 Score=196.02 Aligned_cols=219 Identities=22% Similarity=0.339 Sum_probs=182.6
Q ss_pred CcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcc
Q 002352 438 RKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKF 517 (932)
Q Consensus 438 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~ 517 (932)
++|+||+. +.|+||.+.+. ++++.|+++|+++++++++|++ +++++. +|..++.+|.+|++
T Consensus 2 ~~l~v~~~--~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~g~~--~~~~~~---------~~~~~~~~l~~g~~ 62 (227)
T 3tql_A 2 DTIKFATE--ATYPPYVYMGP------SGQVEGFGADIVKAVCKQMQAV--CTISNQ---------PWDSLIPSLKLGKF 62 (227)
T ss_dssp CEEEEEEC--SCBTTTBEEC--------CCEESHHHHHHHHHHHHTTCE--EEEEEC---------CHHHHHHHHHHTSC
T ss_pred ceEEEEEc--CCCCCeeEECC------CCCcccchHHHHHHHHHHhCCe--EEEEeC---------CHHHHHHHHhCCCC
Confidence 57999995 35667777654 6789999999999999999965 566554 39999999999999
Q ss_pred cEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 002352 518 DAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNEDFR 597 (932)
Q Consensus 518 D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~~~~ 597 (932)
|++++++..+++|.+.+.||.||.....++++++....
T Consensus 63 D~~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~~------------------------------------------ 100 (227)
T 3tql_A 63 DALFGGMNITTARQKEVDFTDPYYTNSVSFIADKNTPL------------------------------------------ 100 (227)
T ss_dssp SEECSSCBCCTTGGGTEEECSCSBCCEEEEEEETTSCC------------------------------------------
T ss_pred CEEEecCcCCHhHHhheecccceeccceEEEEeCCCCC------------------------------------------
Confidence 99988899999999999999999999999999876421
Q ss_pred CcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCCcEE
Q 002352 598 GPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGDNVG 677 (932)
Q Consensus 598 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~vg 677 (932)
+++++||. |+++|
T Consensus 101 -----------------------------------------------------------------~~~~~dL~--g~~v~ 113 (227)
T 3tql_A 101 -----------------------------------------------------------------TLSKQGLK--GKIIG 113 (227)
T ss_dssp -----------------------------------------------------------------CCSTTTTT--TCEEE
T ss_pred -----------------------------------------------------------------CCCHHHhC--CCEEE
Confidence 36889998 99999
Q ss_pred EEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCC-cceEEecccccc-----c
Q 002352 678 YRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYC-SKYTLIERTFET-----A 751 (932)
Q Consensus 678 ~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~-~~l~~~~~~~~~-----~ 751 (932)
+..|+....++++......++..+.+.++++++|.+|+ +|+++.+...+.+++++.. ..+.+++..+.. .
T Consensus 114 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~gr----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (227)
T 3tql_A 114 VQGGTTFDSYLQDSFGNSITIQRYPSEEDALMDLTSGR----VDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGK 189 (227)
T ss_dssp EETTSHHHHHHHHHHGGGSEEEEESSHHHHHHHHTTTS----SSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCS
T ss_pred EEecccHHHHHHHhccccceEEEcCCHHHHHHHHHcCC----cCEEEeChHHHHHHHHhCCCCCEEEecCcccCcccccc
Confidence 99999998888774322157788999999999999999 9999999999988888763 236666544433 3
Q ss_pred ceEEEecCCCC-ChHHHHHHHHhhhccchHHHHHHHhc
Q 002352 752 GFGFAFPLHSP-LVPEVSRAILNVTEGNKMKEIEDEWF 788 (932)
Q Consensus 752 ~~~~~~~k~s~-l~~~in~~il~l~e~G~~~~~~~~~~ 788 (932)
+++++++|++| +...||++|.++.++|.++++.++||
T Consensus 190 ~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~ 227 (227)
T 3tql_A 190 GVGIAVKKGNQALLLKLNKALAAIKANGVYAAIVQKYF 227 (227)
T ss_dssp CBCCEEETTCHHHHHHHHHHHHHHHHTSHHHHHHHHHC
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHhCChHHHHHHhhC
Confidence 45899999876 99999999999999999999999997
No 56
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.84 E-value=1e-20 Score=199.58 Aligned_cols=222 Identities=18% Similarity=0.287 Sum_probs=188.8
Q ss_pred CCCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcC
Q 002352 436 NKRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRG 515 (932)
Q Consensus 436 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g 515 (932)
..++|+|++. +.|+||.+.+. ++++.|+++|+++++++++|++ +++++.+ |..++.+|.+|
T Consensus 27 ~~~~l~v~~~--~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~g~~--~~~~~~~---------~~~~~~~l~~g 87 (259)
T 4dz1_A 27 EGRTLNVAVS--PASPPMLFKSA------DGKLQGIDLELFSSYCQSRHCK--LNITEYA---------WDGMLGAVASG 87 (259)
T ss_dssp TTCEEEEEEC--CCBTTTBEECT------TCCEESHHHHHHHHHHHHHTCE--EEEEECC---------HHHHHHHHHHT
T ss_pred cCCeEEEEEC--CCCCCeEEECC------CCCEEEeHHHHHHHHHHHhCCe--EEEEEcC---------HHHHHHHHhCC
Confidence 4578999994 45667777653 6789999999999999999954 6666643 99999999999
Q ss_pred cccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 002352 516 KFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNED 595 (932)
Q Consensus 516 ~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~~ 595 (932)
++|+++++++.+++|.+.++||.||+..+..++++++...
T Consensus 88 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~---------------------------------------- 127 (259)
T 4dz1_A 88 QADVAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHKI---------------------------------------- 127 (259)
T ss_dssp SSSEEEEEEECCHHHHTTEEECCCSEEEEEEEEEETTSCC----------------------------------------
T ss_pred CCCEEEECCcCCHHHhhccccccchhhCceEEEEEcCCCC----------------------------------------
Confidence 9999999999999999999999999999999999876432
Q ss_pred CCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCCc
Q 002352 596 FRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGDN 675 (932)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~ 675 (932)
.|++++||. |++
T Consensus 128 ------------------------------------------------------------------~i~~~~dL~--g~~ 139 (259)
T 4dz1_A 128 ------------------------------------------------------------------TLNNLNELN--KYS 139 (259)
T ss_dssp ------------------------------------------------------------------CCCSGGGGG--GSC
T ss_pred ------------------------------------------------------------------CCCCHHHhC--CCE
Confidence 288999999 999
Q ss_pred EEEEcChhHHHHHHhcCCCc------ccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCCcceEEeccccc
Q 002352 676 VGYRKDSFVFGILKQLGFDE------KKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYCSKYTLIERTFE 749 (932)
Q Consensus 676 vg~~~~s~~~~~l~~~~~~~------~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~ 749 (932)
||+..|+....++++. .+. .++..+++.++++++|.+|+ +||++.+...+.+++++....+........
T Consensus 140 v~v~~g~~~~~~l~~~-~~~~g~~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (259)
T 4dz1_A 140 IGYPRGMAYSDLIKND-LEPKGYYSLSKVKLYPTYNETMADLKNGN----LDLAFIEEPVYFTFKNKKKMPIESRYVFKN 214 (259)
T ss_dssp EEEETTSTHHHHHHHH-TGGGTSCCGGGCEEESSHHHHHHHHHHTS----CSEEEEEHHHHHHHHHTSCCCEEEEEEEEE
T ss_pred EEEeCCcHHHHHHHHh-cccccccccceeEecCCHHHHHHHHHcCC----CCEEEecHHHHHHHhccCCCceEeecccCC
Confidence 9999999988888763 222 57788999999999999999 999999988887777665434666666666
Q ss_pred ccceEEEecCCCCChHHHHHHHHhhhccchHHHHHHHhccC
Q 002352 750 TAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKK 790 (932)
Q Consensus 750 ~~~~~~~~~k~s~l~~~in~~il~l~e~G~~~~~~~~~~~~ 790 (932)
..+++++++|++++++.||++|.+ ..++.++++.++|...
T Consensus 215 ~~~~~~~~~k~~~l~~~ln~~l~~-~g~~~l~~~~~~~~~~ 254 (259)
T 4dz1_A 215 VDQLGIAFKKGSPVRDDFNLWLKE-QGPQKISGIVDSWMKH 254 (259)
T ss_dssp EEEEEEEEETTCHHHHHHHHHHHH-HCHHHHHHHHHHHTCC
T ss_pred CceEEEEEeCChHHHHHHHHHHHh-CCCeehHHHHHHHHhh
Confidence 788999999988999999999999 9999999999999963
No 57
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.84 E-value=1.5e-20 Score=194.77 Aligned_cols=222 Identities=15% Similarity=0.281 Sum_probs=189.9
Q ss_pred CCCCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHc
Q 002352 435 TNKRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFR 514 (932)
Q Consensus 435 ~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~ 514 (932)
...++|+|++. +.|+||.+.+. ++++.|+++|+++++++++|++ +++++. +|..++.+|.+
T Consensus 8 ~~~~~l~v~~~--~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~g~~--~~~~~~---------~~~~~~~~l~~ 68 (234)
T 3h7m_A 8 DRHRTIVVGGD--RDYPPYEFIDQ------NGKPAGYNVELTRAIAEVMGMT--VEFRLG---------AWSEMFSALKS 68 (234)
T ss_dssp CSSSCEEEEEE--TEETTTEEECT------TSCEESHHHHHHHHHHHHHTCC--EEEEEE---------CGGGHHHHHHT
T ss_pred CCCCEEEEEec--CCCCCeEEECC------CCCEeeeEHHHHHHHHHHcCCc--eEEEeC---------CHHHHHHHHhC
Confidence 34678999983 45667777653 6789999999999999999965 555443 28999999999
Q ss_pred CcccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCC
Q 002352 515 GKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNE 594 (932)
Q Consensus 515 g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~ 594 (932)
|++|++ .++..+++|.+.+.||.||.....++++++...
T Consensus 69 g~~D~~-~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~---------------------------------------- 107 (234)
T 3h7m_A 69 GRVDVL-QGISWSEKRARQIDFTPPHTIVYHAIFARRDSP---------------------------------------- 107 (234)
T ss_dssp TSSSEE-EEEECCHHHHTTEEEEEEEEEEEEEEEEESSSC----------------------------------------
T ss_pred CCeeEE-EeccCCHhHHhhcCCCccccccceEEEEECCCC----------------------------------------
Confidence 999995 679999999999999999999999999987643
Q ss_pred CCCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCC
Q 002352 595 DFRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGD 674 (932)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~ 674 (932)
.+++++||. |+
T Consensus 108 -------------------------------------------------------------------~~~~~~dL~--g~ 118 (234)
T 3h7m_A 108 -------------------------------------------------------------------PAAGLEDLR--GR 118 (234)
T ss_dssp -------------------------------------------------------------------CCSSGGGGT--TS
T ss_pred -------------------------------------------------------------------CCCCHHHhC--CC
Confidence 178999998 99
Q ss_pred cEEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccC-CcceEEecccccccce
Q 002352 675 NVGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQY-CSKYTLIERTFETAGF 753 (932)
Q Consensus 675 ~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~ 753 (932)
++|+..|+....++++. .+..++..+++.++++++|.+|+ +|+++.+...+.+++++. ...+.++...+...++
T Consensus 119 ~i~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (234)
T 3h7m_A 119 KVALHRDGIMHEYLAER-GYGKDLVLTPTPADALRLLAAGG----CDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRY 193 (234)
T ss_dssp CEEEETTSHHHHHHHTT-TCGGGEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEE
T ss_pred EEEEEeCchHHHHHHhc-CCCceEEEeCCHHHHHHHHHcCC----ceEEEeccHHHHHHHHhcCCCceEEeccccCCCce
Confidence 99999999999988875 34557788999999999999999 999999998888888765 3457777777788889
Q ss_pred EEEecCCCC-ChHHHHHHHHhhhccchHHHHHHHhccC
Q 002352 754 GFAFPLHSP-LVPEVSRAILNVTEGNKMKEIEDEWFKK 790 (932)
Q Consensus 754 ~~~~~k~s~-l~~~in~~il~l~e~G~~~~~~~~~~~~ 790 (932)
+++++|+++ +++.||++|.++.++|.++++.++|++.
T Consensus 194 ~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 231 (234)
T 3h7m_A 194 GYAVRQGDAELLARFSEGLAILRKTGQYEAIRAKWLGV 231 (234)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTHHHHHHHHSTTC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHcCcHHHHHHHhccc
Confidence 999999875 9999999999999999999999999964
No 58
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.83 E-value=2.9e-20 Score=191.29 Aligned_cols=220 Identities=20% Similarity=0.361 Sum_probs=187.1
Q ss_pred CcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcc
Q 002352 438 RKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKF 517 (932)
Q Consensus 438 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~ 517 (932)
++|+|++. +.|+||.+.+ ++++.|+++|+++.+++++|++ ++++... |..++.+|.+|++
T Consensus 3 ~~l~v~~~--~~~~P~~~~~-------~g~~~G~~~dl~~~~~~~~g~~--~~~~~~~---------~~~~~~~l~~g~~ 62 (226)
T 1wdn_A 3 KKLVVATD--TAFVPFEFKQ-------GDLYVGFDVDLWAAIAKELKLD--YELKPMD---------FSGIIPALQTKNV 62 (226)
T ss_dssp -CEEEEEE--SSBTTTBEEE-------TTEEESHHHHHHHHHHHHHTCC--EEEEEEC---------GGGHHHHHHTTSS
T ss_pred ceEEEEEC--CCCCCeeEec-------CCcEEEeeHHHHHHHHHHhCCE--EEEEECC---------HHHHHHHHhCCCC
Confidence 57999995 4566777654 4689999999999999999965 5555533 8999999999999
Q ss_pred cEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 002352 518 DAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNEDFR 597 (932)
Q Consensus 518 D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~~~~ 597 (932)
|++++++..+++|.+.+.|+.||.....++++++...
T Consensus 63 D~~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~------------------------------------------- 99 (226)
T 1wdn_A 63 DLALAGITITDERKKAIDFSDGYYKSGLLVMVKANNN------------------------------------------- 99 (226)
T ss_dssp SEEEEEEECCHHHHTTSEECSCCEEEEEEEEEETTCC-------------------------------------------
T ss_pred CEEEEcCcCCHHHhCccccccchhcCceEEEEeCCCC-------------------------------------------
Confidence 9999889999999999999999999999999986632
Q ss_pred CcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCCcEE
Q 002352 598 GPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGDNVG 677 (932)
Q Consensus 598 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~vg 677 (932)
.+++++||. |+++|
T Consensus 100 ----------------------------------------------------------------~i~~~~dL~--g~~i~ 113 (226)
T 1wdn_A 100 ----------------------------------------------------------------DVKSVKDLD--GKVVA 113 (226)
T ss_dssp ----------------------------------------------------------------SCSSSTTTT--TCEEE
T ss_pred ----------------------------------------------------------------CCCCHHHhC--CCEEE
Confidence 178899998 99999
Q ss_pred EEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCC-cceEEecccccccceEEE
Q 002352 678 YRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYC-SKYTLIERTFETAGFGFA 756 (932)
Q Consensus 678 ~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ 756 (932)
+..|+....++++. ++..++..+.+.++++++|.+|+ +|+++.+...+.+++++.. ..+.+++..+....++++
T Consensus 114 ~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 188 (226)
T 1wdn_A 114 VKSGTGSVDYAKAN-IKTKDLRQFPNIDNAYMELGTNR----ADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIA 188 (226)
T ss_dssp EETTSHHHHHHHHH-CCCSEEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEE
T ss_pred EEcCCcHHHHHHHh-CCCceEEEeCCHHHHHHHHHcCC----cCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEE
Confidence 99999988888875 34456778899999999999999 9999999988888877762 347777777777788999
Q ss_pred ecCCC-CChHHHHHHHHhhhccchHHHHHHHhccCC
Q 002352 757 FPLHS-PLVPEVSRAILNVTEGNKMKEIEDEWFKKR 791 (932)
Q Consensus 757 ~~k~s-~l~~~in~~il~l~e~G~~~~~~~~~~~~~ 791 (932)
++|++ .+...+|++|.++.++|.++++.+||++..
T Consensus 189 ~~k~~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~~ 224 (226)
T 1wdn_A 189 FPKGSDELRDKVNGALKTLRENGTYNEIYKKWFGTE 224 (226)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHTSHHHHHHHHHHSSC
T ss_pred EeCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCC
Confidence 99987 599999999999999999999999999753
No 59
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.83 E-value=1.7e-20 Score=198.95 Aligned_cols=220 Identities=16% Similarity=0.295 Sum_probs=186.6
Q ss_pred CCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCc
Q 002352 437 KRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGK 516 (932)
Q Consensus 437 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~ 516 (932)
.++|+||+. +.|+||.+.+. ++++.|+++|+++++++++|+ ++++++.. +|..++.+|.+|+
T Consensus 31 ~~~l~v~~~--~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~lg~--~~~~~~~~--------~~~~~~~~l~~G~ 92 (267)
T 3mpk_A 31 HPVVKVAVL--NLFAPFTLFRT------DEQFGGISAAVLQLLQLRTGL--DFEIIGVD--------TVEELIAKLRSGE 92 (267)
T ss_dssp CSEEEEEEE--TEETTTEECCT------TCCCBSHHHHHHHHHHHHHCC--EEEEEEES--------SHHHHHHHHHHTS
T ss_pred CCcEEEEeC--CCCCCeEEECC------CCcEeeeHHHHHHHHHHHHCC--eEEEEecC--------CHHHHHHHHHCCC
Confidence 567999995 44667777543 678999999999999999995 56666554 5999999999999
Q ss_pred ccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 002352 517 FDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNEDF 596 (932)
Q Consensus 517 ~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~~~ 596 (932)
+|+++ +++.+++|.+.+.||.||.....++++++...
T Consensus 93 ~D~~~-~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~------------------------------------------ 129 (267)
T 3mpk_A 93 ADMAG-ALFVNSARESFLSFSRPYVRNGMVIVTRQDPD------------------------------------------ 129 (267)
T ss_dssp CSEEE-EEECCGGGTTTEEECSCSEEECEEEEEESSTT------------------------------------------
T ss_pred ccEEe-cccCChhhhcceEechhhccCceEEEEECCCC------------------------------------------
Confidence 99975 79999999999999999999999999986632
Q ss_pred CCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCCcE
Q 002352 597 RGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGDNV 676 (932)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v 676 (932)
.+++++||. |++|
T Consensus 130 -----------------------------------------------------------------~i~~~~dL~--g~~i 142 (267)
T 3mpk_A 130 -----------------------------------------------------------------APVDADHLD--GRTV 142 (267)
T ss_dssp -----------------------------------------------------------------SCSSGGGCT--TCEE
T ss_pred -----------------------------------------------------------------CCCCHHHHC--CCEE
Confidence 178999998 9999
Q ss_pred EEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccC-CcceEEecccc-cccceE
Q 002352 677 GYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQY-CSKYTLIERTF-ETAGFG 754 (932)
Q Consensus 677 g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~-~~~l~~~~~~~-~~~~~~ 754 (932)
|+..|+....++++. .+..++..+++.++++++|.+|+ +||++.+...+.+++++. ...+.++.... ...+++
T Consensus 143 ~v~~g~~~~~~l~~~-~~~~~~~~~~~~~~~l~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 217 (267)
T 3mpk_A 143 ALVRNSAAIPLLQRR-YPQAKVVTADNPSEAMLMVANGQ----ADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIA 217 (267)
T ss_dssp EEETTCTHHHHHHHH-CTTSEEEEESSHHHHHHHHHHTS----CSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEE
T ss_pred EEeCCchhHHHHHHh-CCCcEEEEeCCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEE
Confidence 999999999988874 45667889999999999999999 999999999998888874 34477765533 467889
Q ss_pred EEecCCCC-ChHHHHHHHHhhhccchHHHHHHHhccC
Q 002352 755 FAFPLHSP-LVPEVSRAILNVTEGNKMKEIEDEWFKK 790 (932)
Q Consensus 755 ~~~~k~s~-l~~~in~~il~l~e~G~~~~~~~~~~~~ 790 (932)
++++|+++ +...||++|.++.++| ++++.+||++.
T Consensus 218 ~~~~k~~~~l~~~ln~~l~~l~~~~-~~~i~~kw~~~ 253 (267)
T 3mpk_A 218 LATTRGQTELMSILNKALYSISNDE-LASIISRWRGS 253 (267)
T ss_dssp EEEETTCHHHHHHHHHHHHTSCHHH-HHHHHHTTC--
T ss_pred EEEcCCCHHHHHHHHHHHHhCCHHH-HHHHHHhhccC
Confidence 99999886 9999999999999996 99999999975
No 60
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.83 E-value=4.4e-20 Score=190.50 Aligned_cols=218 Identities=20% Similarity=0.369 Sum_probs=185.7
Q ss_pred CCCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcC
Q 002352 436 NKRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRG 515 (932)
Q Consensus 436 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g 515 (932)
..++|+|++. +.|+||.+.+. ++++.|+++|+++++++++|++ +++++. +|..++..|.+|
T Consensus 4 ~a~~l~v~~~--~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~g~~--~~~~~~---------~~~~~~~~l~~g 64 (229)
T 2y7i_A 4 SARTLHFGTS--ATYAPYEFVDA------DNKIVGFDIDVANAVCKEMQAE--CSFTNQ---------SFDSLIPSLRFK 64 (229)
T ss_dssp SCCEEEEEEC--CCBTTTBEECT------TSCEESHHHHHHHHHHHHTTCE--EEEEEC---------CGGGHHHHHHTT
T ss_pred cCCcEEEEeC--CCcCCceEECC------CCCCcceeHHHHHHHHHHhCCe--EEEEEc---------CHHHHHHHHhCC
Confidence 4678999994 55667776543 5789999999999999999965 566554 389999999999
Q ss_pred cccEEEeeeeeecccccccccccccccc-CeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCC
Q 002352 516 KFDAVVGDTTILANRSKFVEFTLPYTES-GVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNE 594 (932)
Q Consensus 516 ~~D~~~~~~~it~~R~~~vdfs~p~~~~-~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~ 594 (932)
++|++++++..+++|.+.+.|+.||... ..++++++..
T Consensus 65 ~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~----------------------------------------- 103 (229)
T 2y7i_A 65 KFDAVIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRKGA----------------------------------------- 103 (229)
T ss_dssp SCSEECSSCBCCHHHHTTSEECSCSBCCCCEEEEEETTS-----------------------------------------
T ss_pred CceEEEecCccCHHHhcceeeccccccCCcEEEEEeCCC-----------------------------------------
Confidence 9999987889999999999999999999 9999998652
Q ss_pred CCCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCC
Q 002352 595 DFRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGD 674 (932)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~ 674 (932)
+++++||. |+
T Consensus 104 --------------------------------------------------------------------~~~~~dL~--g~ 113 (229)
T 2y7i_A 104 --------------------------------------------------------------------YHTFADLK--GK 113 (229)
T ss_dssp --------------------------------------------------------------------CCSTGGGT--TC
T ss_pred --------------------------------------------------------------------CCCHHHHC--CC
Confidence 46899998 99
Q ss_pred cEEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCCcceEEeccccc-----
Q 002352 675 NVGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYCSKYTLIERTFE----- 749 (932)
Q Consensus 675 ~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~----- 749 (932)
+||+..|+....++++. .+..++..+.+.++++++|.+|+ +|+++.+...+.+++++.. ++.++...+.
T Consensus 114 ~v~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~gr----vDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 187 (229)
T 2y7i_A 114 KVGLENGTTHQRYLQDK-QQAITPVAYDSYLNAFTDLKNNR----LEGVFGDVAAIGKWLKNNP-DYAIMDERASDPDYY 187 (229)
T ss_dssp EEEEETTSHHHHHHHHH-CTTSEEEEESCHHHHHHHHHTTS----CSEEEEEHHHHHHHHTTCT-TEEECSCCBCCTTTS
T ss_pred EEEEecCCcHHHHHHHh-CCCCeEEecCCHHHHHHHHHcCC----cCEEEechHHHHHHHHhCC-CeEEecccccccccc
Confidence 99999999988888864 34457778899999999999999 9999999999988888776 4777765543
Q ss_pred ccceEEEecCCCC-ChHHHHHHHHhhhccchHHHHHHHhcc
Q 002352 750 TAGFGFAFPLHSP-LVPEVSRAILNVTEGNKMKEIEDEWFK 789 (932)
Q Consensus 750 ~~~~~~~~~k~s~-l~~~in~~il~l~e~G~~~~~~~~~~~ 789 (932)
...++++++|+++ ++..||++|.++.++|.++++.+||++
T Consensus 188 ~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 228 (229)
T 2y7i_A 188 GKGLGIAVRKDNDALLQEINAALDKVKASPEYAQMQEKWFT 228 (229)
T ss_dssp CCCBCCEECTTCHHHHHHHHHHHHHHHTSHHHHHHHHHHHC
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 2478899999876 999999999999999999999999985
No 61
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.83 E-value=3.5e-20 Score=192.75 Aligned_cols=222 Identities=15% Similarity=0.258 Sum_probs=181.6
Q ss_pred CCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCc
Q 002352 437 KRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGK 516 (932)
Q Consensus 437 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~ 516 (932)
.++|+|++ .+.|+||.+.+. ++++.|+++|+++++++++|++ ++++.. +|..++.+|.+|+
T Consensus 3 ~~~l~v~~--~~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~g~~--~~~~~~---------~~~~~~~~l~~g~ 63 (239)
T 1lst_A 3 PQTVRIGT--DTTYAPFSSKDA------KGEFIGFDIDLGNEMCKRMQVK--CTWVAS---------DFDALIPSLKAKK 63 (239)
T ss_dssp CSEEEEEE--CSCBTTTBEECT------TCCEESHHHHHHHHHHHHHTCE--EEEEEC---------CGGGHHHHHHTTS
T ss_pred cceEEEEE--CCCcCCeeEECC------CCCEeeEHHHHHHHHHHHHCCe--EEEEeC---------CHHHHHHHHhCCC
Confidence 56799999 345667776643 6789999999999999999955 566554 3899999999999
Q ss_pred ccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 002352 517 FDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNEDF 596 (932)
Q Consensus 517 ~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~~~ 596 (932)
+|+++++++.+++|.+.++||.||+....++++++..+.
T Consensus 64 ~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~~----------------------------------------- 102 (239)
T 1lst_A 64 IDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPI----------------------------------------- 102 (239)
T ss_dssp CSEECSSCBCCHHHHHHCEECSCSBCCCEEEEEETTCCC-----------------------------------------
T ss_pred CCEEEECcCcCHHHhhceeecccceeCceEEEEeCCCCC-----------------------------------------
Confidence 999988899999999999999999999999999876321
Q ss_pred CCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCCcE
Q 002352 597 RGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGDNV 676 (932)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v 676 (932)
..+++||. |++|
T Consensus 103 ------------------------------------------------------------------~~~~~dL~--g~~v 114 (239)
T 1lst_A 103 ------------------------------------------------------------------QPTLESLK--GKHV 114 (239)
T ss_dssp ------------------------------------------------------------------CSSHHHHT--TCEE
T ss_pred ------------------------------------------------------------------CCCHHHhC--CCEE
Confidence 24899998 9999
Q ss_pred EEEcChhHHHHHHhcCC-CcccccccCCHHHHHHHhhcccCCCceeEEEeccccccc-ccccC-CcceEEecccccc---
Q 002352 677 GYRKDSFVFGILKQLGF-DEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKP-FIGQY-CSKYTLIERTFET--- 750 (932)
Q Consensus 677 g~~~~s~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~-~~~~~-~~~l~~~~~~~~~--- 750 (932)
|+..|+....++++... +..++..+++.++++++|.+|+ +|+++.+...+.+ ++.+. ...+.+++..+..
T Consensus 115 ~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (239)
T 1lst_A 115 GVLQGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGR----LDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKY 190 (239)
T ss_dssp EEETTSHHHHHHHHHTGGGTCEEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHH
T ss_pred EEEcCccHHHHHHHhcccCCCeEEEcCCHHHHHHHHHcCC----CCEEEeCcHHHHHHHHhccCCCceEEeccccccccc
Confidence 99999998888876421 2346678899999999999999 9999998877643 44443 2347776655443
Q ss_pred --cceEEEecCCCC-ChHHHHHHHHhhhccchHHHHHHHhccC
Q 002352 751 --AGFGFAFPLHSP-LVPEVSRAILNVTEGNKMKEIEDEWFKK 790 (932)
Q Consensus 751 --~~~~~~~~k~s~-l~~~in~~il~l~e~G~~~~~~~~~~~~ 790 (932)
..++++++|+++ +.+.+|++|.++.++|.++++.++|++.
T Consensus 191 ~~~~~~~~~~k~~~~l~~~~~~~l~~l~~~G~~~~i~~k~~~~ 233 (239)
T 1lst_A 191 FGDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDF 233 (239)
T ss_dssp HCSSBCCEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHTTCSS
T ss_pred cCcceEEEEeCCCHHHHHHHHHHHHHHHHCccHHHHHHHHcCC
Confidence 368899999887 9999999999999999999999999964
No 62
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.82 E-value=7.7e-21 Score=202.03 Aligned_cols=222 Identities=16% Similarity=0.253 Sum_probs=182.8
Q ss_pred CCCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcC
Q 002352 436 NKRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRG 515 (932)
Q Consensus 436 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g 515 (932)
..++|+|++. +.|+||.+.+.+ ++ .+++.|+++|+++++++++|++ ++++..+ |..++.+|.+|
T Consensus 19 ~~~~l~v~~~--~~~pP~~~~~~~--~~-~g~~~G~~~dl~~~i~~~~g~~--v~~~~~~---------~~~~~~~l~~G 82 (271)
T 2iee_A 19 DKGKIVVATS--GTLYPTSYHDTD--SG-SDKLTGYEVEVVREAAKRLGLK--VEFKEMG---------IDGMLTAVNSG 82 (271)
T ss_dssp HHTEEEEEEC--SCBTTTBEEETT--TT-CCEEECHHHHHHHHHHHHTTCE--EEEEECC---------STTHHHHHHHT
T ss_pred cCCeEEEEEC--CCCCCeeEeCCC--CC-CCCceeeHHHHHHHHHHHcCCe--EEEEECC---------HHHHHHHHHCC
Confidence 4578999984 466777776531 11 2789999999999999999964 6666543 88999999999
Q ss_pred cccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 002352 516 KFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNED 595 (932)
Q Consensus 516 ~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~~ 595 (932)
++|+++++++.+++|.+.++||.||+....++++++....
T Consensus 83 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~---------------------------------------- 122 (271)
T 2iee_A 83 QVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLS---------------------------------------- 122 (271)
T ss_dssp SSSEECSSCBCCHHHHTTEEECCCSEEEEEEEEECTTTGG----------------------------------------
T ss_pred CcCEEEeCCcCChhhccceEEeecceeCCeEEEEECCCCC----------------------------------------
Confidence 9999998888999999999999999999999999866321
Q ss_pred CCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCCc
Q 002352 596 FRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGDN 675 (932)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~ 675 (932)
.|++++||. |++
T Consensus 123 ------------------------------------------------------------------~i~~~~dL~--g~~ 134 (271)
T 2iee_A 123 ------------------------------------------------------------------GIKTLKDLK--GKK 134 (271)
T ss_dssp ------------------------------------------------------------------GCSSGGGGT--TCE
T ss_pred ------------------------------------------------------------------CCCCHHHhC--CCE
Confidence 178999998 999
Q ss_pred EEEEcChhHHHHHHhcCCCcccccccCCHHHH--HHHhhcccCCCceeEEEecccccccccc-cC-CcceEEe-cccccc
Q 002352 676 VGYRKDSFVFGILKQLGFDEKKLIAYSSPEEC--DELFQKGSAGGGIAAAFDEIPYTKPFIG-QY-CSKYTLI-ERTFET 750 (932)
Q Consensus 676 vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~--~~~l~~g~~~~g~~a~~~~~~~~~~~~~-~~-~~~l~~~-~~~~~~ 750 (932)
||+..|+....++++.+. ++..+.+.+++ +++|.+|+ +| ++.+...+.+++. ++ ...+.++ ...+..
T Consensus 135 i~v~~g~~~~~~l~~~~~---~~~~~~~~~~~~l~~~L~~Gr----vD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (271)
T 2iee_A 135 AAGAATTVYMEVARKYGA---KEVIYDNATNEQYLKDVANGR----TD-VILNDYYLQTLALAAFPDLNITIHPDIKYMP 206 (271)
T ss_dssp EESCTTSHHHHHHHHTTC---EEEECSSCCHHHHHHHHHHTS----SC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEE
T ss_pred EEEeCCccHHHHHHHcCC---ceEEeCChhhHHHHHHHHcCC----cc-EEeccHHHHHHHHHhCCCCceEEecCCCccc
Confidence 999999998888887543 67788888888 99999999 99 6666555555554 43 2347776 666777
Q ss_pred cceEEEecCCCC-ChHHHHHHHHhhhccchHHHHHHHhcc
Q 002352 751 AGFGFAFPLHSP-LVPEVSRAILNVTEGNKMKEIEDEWFK 789 (932)
Q Consensus 751 ~~~~~~~~k~s~-l~~~in~~il~l~e~G~~~~~~~~~~~ 789 (932)
.+++++++|+++ ++..||++|.++.++|.++++.+||+.
T Consensus 207 ~~~~~~~~k~~~~l~~~ln~al~~l~~~G~~~~i~~k~~~ 246 (271)
T 2iee_A 207 NKQALVMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFN 246 (271)
T ss_dssp EEECCEEETTCHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred ceEEEEEcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHhCC
Confidence 788999999876 999999999999999999999999997
No 63
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.82 E-value=3.3e-20 Score=193.78 Aligned_cols=222 Identities=12% Similarity=0.184 Sum_probs=183.7
Q ss_pred CCCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCC-CcccEEEEeccCCCCCCCCCHHHHHHHHHc
Q 002352 436 NKRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELP-YAVAYDFVPYAQPDGTSSGSYNDLMYQVFR 514 (932)
Q Consensus 436 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~-f~~~~~~~~~~~~~g~~ngs~~~li~~l~~ 514 (932)
..++|+|++. +.|+||.+. . ++++.|+++|+++++++++| ++ +++++.. |..++.+|.+
T Consensus 6 ~~~~l~v~~~--~~~~P~~~~-~------~g~~~G~~~dl~~~i~~~~g~~~--~~~~~~~---------~~~~~~~l~~ 65 (246)
T 4eq9_A 6 SKKEIIVATN--GSPRPFIYE-E------NGELTGYEIEVVRAIFKDSDKYD--VKFEKTE---------WSGVFAGLDA 65 (246)
T ss_dssp -CEEEEEEEC--CCSTTTSEE-E------TTEEESHHHHHHHHHHTTCSSEE--EEEEECC---------HHHHHHHHHT
T ss_pred CCCEEEEEeC--CCcCCeEEc-C------CCCCcccHHHHHHHHHHHcCCce--EEEEeCC---------HHHHHHHHhC
Confidence 3567999995 345667763 3 77899999999999999999 76 5555543 9999999999
Q ss_pred CcccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCC
Q 002352 515 GKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNE 594 (932)
Q Consensus 515 g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~ 594 (932)
|++|+++++++.+++|.+.+.||.||+....++++++.+.
T Consensus 66 g~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~---------------------------------------- 105 (246)
T 4eq9_A 66 DRYNMAVNNLSYTKERAEKYLYAAPIAQNPNVLVVKKDDS---------------------------------------- 105 (246)
T ss_dssp TSCSEECSSCCCCHHHHHHEEECCCCEECCEEEEEETTCC----------------------------------------
T ss_pred CCcCEEecccccChhhhhceeeccceecCceEEEEECCCC----------------------------------------
Confidence 9999999889999999999999999999999999987322
Q ss_pred CCCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCC
Q 002352 595 DFRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGD 674 (932)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~ 674 (932)
.+++++||. |+
T Consensus 106 -------------------------------------------------------------------~i~~~~dL~--g~ 116 (246)
T 4eq9_A 106 -------------------------------------------------------------------SIKSLDDIG--GK 116 (246)
T ss_dssp -------------------------------------------------------------------SCSSGGGCT--TC
T ss_pred -------------------------------------------------------------------CCCCHHHhC--CC
Confidence 178999998 99
Q ss_pred cEEEEcChhHHHHHHhc--CCCc--cccc-ccCCHHHHHHHhhcccCCCceeEEEecccccccccccCC-cceEEecccc
Q 002352 675 NVGYRKDSFVFGILKQL--GFDE--KKLI-AYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYC-SKYTLIERTF 748 (932)
Q Consensus 675 ~vg~~~~s~~~~~l~~~--~~~~--~~~~-~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~-~~l~~~~~~~ 748 (932)
+||+..|+....++.+. ..+. ..+. ...+.++++++|.+|+ +|+++.+...+.+++++.. ..+.++....
T Consensus 117 ~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (246)
T 4eq9_A 117 STEVVQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQ----FDYKIFDKIGVETVIKNQGLDNLKVIELPS 192 (246)
T ss_dssp EEEECTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHHTCTTEEEEECCC
T ss_pred EEEEecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCC----ceEEEecHHHHHHHHHhCCCCCceEecCcC
Confidence 99999999888887661 1222 2333 2358899999999999 9999999999998888763 4477777666
Q ss_pred cccc-eEEEecCCCC-ChHHHHHHHHhhhccchHHHHHHHhccC
Q 002352 749 ETAG-FGFAFPLHSP-LVPEVSRAILNVTEGNKMKEIEDEWFKK 790 (932)
Q Consensus 749 ~~~~-~~~~~~k~s~-l~~~in~~il~l~e~G~~~~~~~~~~~~ 790 (932)
.... ++++++|++| ++..||++|.++.++|.++++.++|++.
T Consensus 193 ~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~ 236 (246)
T 4eq9_A 193 DQQPYVYPLLAQGQDELKSFVDKRIKELYKDGTLEKLSKQFFGD 236 (246)
T ss_dssp SSCCEECCEEETTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred CCCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHhcCC
Confidence 6555 7899999875 9999999999999999999999999974
No 64
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.81 E-value=9.1e-20 Score=191.98 Aligned_cols=223 Identities=13% Similarity=0.155 Sum_probs=185.8
Q ss_pred CCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCc
Q 002352 437 KRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGK 516 (932)
Q Consensus 437 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~ 516 (932)
.++|+|++. .|+||.+.+. ++++.|+++|+++++++++|++ .++++... |..++.+|.+|+
T Consensus 12 ~~~l~v~~~---~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~g~~-~~~~~~~~---------~~~~~~~l~~g~ 72 (257)
T 2q88_A 12 QGFARIAIA---NEPPFTAVGA------DGKVSGAAPDVAREIFKRLGVA-DVVASISE---------YGAMIPGLQAGR 72 (257)
T ss_dssp HTEEEEEEC---CCTTTCEECT------TCCEESHHHHHHHHHHHHTTCC-EEEEEECC---------GGGHHHHHHTTS
T ss_pred CCeEEEEcC---CCCCeeEECC------CCCcccccHHHHHHHHHHcCCC-eeeEEeCC---------HHHHHHHHHCCC
Confidence 467999995 4566776543 6789999999999999999964 25555543 899999999999
Q ss_pred ccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 002352 517 FDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNEDF 596 (932)
Q Consensus 517 ~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~~~ 596 (932)
+|++++++..+++|.+.++||.||+..+.++++++....
T Consensus 73 ~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~----------------------------------------- 111 (257)
T 2q88_A 73 HDAITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNPL----------------------------------------- 111 (257)
T ss_dssp CSEECSCCBCCHHHHTTSEECSCCCEECEEEEEETTCTT-----------------------------------------
T ss_pred cCEEEecccCCHHHHhccccccchhcCceEEEEECCCcc-----------------------------------------
Confidence 999988899999999999999999999999999876432
Q ss_pred CCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhC-CCc
Q 002352 597 RGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKS-GDN 675 (932)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~-~~~ 675 (932)
.+++++||..+ |++
T Consensus 112 -----------------------------------------------------------------~i~~~~dL~~~~g~~ 126 (257)
T 2q88_A 112 -----------------------------------------------------------------GLKSYKDIADNPDAK 126 (257)
T ss_dssp -----------------------------------------------------------------CCCBHHHHHHCTTCC
T ss_pred -----------------------------------------------------------------CCCCHHHHhccCCce
Confidence 27899999866 789
Q ss_pred EEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCC-cceEEeccccc--ccc
Q 002352 676 VGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYC-SKYTLIERTFE--TAG 752 (932)
Q Consensus 676 vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~-~~l~~~~~~~~--~~~ 752 (932)
||+..|+....++++.+.+..++..+++.++++++|.+|+ +|+++.+...+.+++++.. ..+..+.+... ...
T Consensus 127 i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (257)
T 2q88_A 127 IGAPGGGTEEKLALEAGVPRDRVIVVPDGQSGLKMLQDGR----IDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYC 202 (257)
T ss_dssp EEECTTSHHHHHHHHTTCCGGGEEECSSHHHHHHHHHHTS----CSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEE
T ss_pred EEEECCcccHHHHHhcCCCCceEEEcCCHHHHHHHHHcCC----CcEEEcCHHHHHHHHHhCCCcceeeecccCCccccc
Confidence 9999999999999887777677888999999999999999 9999999988888887653 34555443211 345
Q ss_pred eEEEecCCC-CChHHHHHHHHhhhccchHHHHHHHhc
Q 002352 753 FGFAFPLHS-PLVPEVSRAILNVTEGNKMKEIEDEWF 788 (932)
Q Consensus 753 ~~~~~~k~s-~l~~~in~~il~l~e~G~~~~~~~~~~ 788 (932)
++++++|++ .+...||++|.++.++|.++++.++|.
T Consensus 203 ~~~~~~k~~~~l~~~l~~~l~~~~~~g~~~~i~~k~~ 239 (257)
T 2q88_A 203 DGAAFRKGDEALRDAFDVELAKLKESGEFAKIIEPYG 239 (257)
T ss_dssp BCCEECGGGHHHHHHHHHHHHHHHHHTHHHHHHGGGT
T ss_pred eEEEEcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHhC
Confidence 677899975 599999999999999999999999994
No 65
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.80 E-value=1.7e-19 Score=185.76 Aligned_cols=221 Identities=19% Similarity=0.349 Sum_probs=182.2
Q ss_pred CCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCc
Q 002352 437 KRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGK 516 (932)
Q Consensus 437 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~ 516 (932)
.++|+|++.. ++||.+. . ++++.|+++|+++.+++++|++ ++++... +|.+++.+|.+|+
T Consensus 2 ~~~l~v~~~~---~~P~~~~-~------~g~~~G~~~dl~~~~~~~~g~~--~~~~~~~--------~~~~~~~~l~~g~ 61 (228)
T 2pyy_A 2 QQPLLVATRV---IPPFVLS-N------KGELSGFSIDLWRSIATQIGIE--SKLIEYS--------SVPELISAIKDNK 61 (228)
T ss_dssp --CEEEEECC---BTTTBBC-C---------CBSHHHHHHHHHHHHHTCC--EEEEECS--------SHHHHHHHHHTTS
T ss_pred CceEEEEecC---CCCeEEe-c------CCceEEEeHHHHHHHHHHhCCc--EEEEEcC--------CHHHHHHHHHCCC
Confidence 3579999964 5566654 2 6689999999999999999954 6666653 4899999999999
Q ss_pred ccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 002352 517 FDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNEDF 596 (932)
Q Consensus 517 ~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~~~ 596 (932)
+|++++++..+++|.+.+.|+.||.....++++++..+.
T Consensus 62 ~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~----------------------------------------- 100 (228)
T 2pyy_A 62 VNLGIAAISITAEREQNFDFSLPIFASGLQIMVRNLESG----------------------------------------- 100 (228)
T ss_dssp CSEECSSCBCCHHHHHHSEECSCSEEEEEEEEEEC---------------------------------------------
T ss_pred cCEEEeccccCHHHHccceecccchhcceEEEEECCccc-----------------------------------------
Confidence 999988888999999999999999999999999876421
Q ss_pred CCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCCcE
Q 002352 597 RGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGDNV 676 (932)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~v 676 (932)
...+++++||. |+++
T Consensus 101 ---------------------------------------------------------------~~~~~~~~dL~--g~~i 115 (228)
T 2pyy_A 101 ---------------------------------------------------------------TGDIRSIDDLP--GKVV 115 (228)
T ss_dssp ----------------------------------------------------------------CCCCSGGGCT--TCEE
T ss_pred ---------------------------------------------------------------cCCcCCHHHcC--CCeE
Confidence 11278999998 9999
Q ss_pred EEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCC-cceEEecccccccceEE
Q 002352 677 GYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYC-SKYTLIERTFETAGFGF 755 (932)
Q Consensus 677 g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~ 755 (932)
|+..|+....++++.+. ++..+.+.++++++|.+|+ +|+++.+...+.+++++.. ..+.+++..+....+++
T Consensus 116 ~~~~g~~~~~~l~~~~~---~~~~~~~~~~~~~~l~~g~----~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
T 2pyy_A 116 ATTAGSTAATYLREHHI---SVLEVPKIEEAYKALQTKK----ADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGI 188 (228)
T ss_dssp EEETTSHHHHHHHHTTC---EEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECC
T ss_pred EEEcCcHHHHHHHHcCC---ceEecCCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEE
Confidence 99999998888887543 5677899999999999999 9999999888888877662 24777776677778899
Q ss_pred EecCCCCChHHHHHHHHhhhccchHHHHHHHhccC
Q 002352 756 AFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKK 790 (932)
Q Consensus 756 ~~~k~s~l~~~in~~il~l~e~G~~~~~~~~~~~~ 790 (932)
+++|++++...+|++|.++.++|.++++.++|+..
T Consensus 189 ~~~~~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~ 223 (228)
T 2pyy_A 189 ILPNNSPYRKPINQALLNLKENGTYQSLYDKWFDP 223 (228)
T ss_dssp EECTTCTTHHHHHHHHHHHHHTTHHHHHHHHHHCC
T ss_pred EEeCChHHHHHHHHHHHHHHhCCcHHHHHHHHcCC
Confidence 99999999999999999999999999999999964
No 66
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.80 E-value=4.5e-19 Score=188.48 Aligned_cols=221 Identities=20% Similarity=0.363 Sum_probs=187.1
Q ss_pred CCCCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHc
Q 002352 435 TNKRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFR 514 (932)
Q Consensus 435 ~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~ 514 (932)
...++|+|++. +.|+||.+.+ ++++.|+++|+++++++++|++ ++++... |..++.+|.+
T Consensus 39 ~~~~~l~v~~~--~~~~P~~~~~-------~g~~~G~~~dl~~~i~~~~g~~--v~~~~~~---------~~~~~~~l~~ 98 (272)
T 2pvu_A 39 ATKKKVVVGTD--AAFAPFEYMQ-------KGKIVGFDVDLLDAVMKAAGLD--YELKNIG---------WDPLFASLQS 98 (272)
T ss_dssp CCCCCEEEEEC--CCBTTTBEEE-------TTEEESHHHHHHHHHHHHHTCC--EEEEECC---------HHHHHHHHHH
T ss_pred ccCCeEEEEEC--CCCCCeEEec-------CCeEEEEHHHHHHHHHHHhCCc--eEEEECC---------HHHHHHHHhC
Confidence 34678999995 4566777653 5689999999999999999955 5665543 8999999999
Q ss_pred CcccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCC
Q 002352 515 GKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNE 594 (932)
Q Consensus 515 g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~ 594 (932)
|++|++++++..+++|.+.+.|+.||.....++++++..+
T Consensus 99 G~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~---------------------------------------- 138 (272)
T 2pvu_A 99 KEVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGSP---------------------------------------- 138 (272)
T ss_dssp TSSSEECSSCBCCHHHHTTEEECSCCEEECEEEEEETTCC----------------------------------------
T ss_pred CCCCEEEeCCcCCHHHHhcCccchhhhccceEEEEECCCC----------------------------------------
Confidence 9999998888899999999999999999999999986531
Q ss_pred CCCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCC
Q 002352 595 DFRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGD 674 (932)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~ 674 (932)
+++++||. |+
T Consensus 139 --------------------------------------------------------------------i~~~~dL~--g~ 148 (272)
T 2pvu_A 139 --------------------------------------------------------------------VKNALDLK--GK 148 (272)
T ss_dssp --------------------------------------------------------------------CCSGGGGT--TS
T ss_pred --------------------------------------------------------------------CCCHHHhC--CC
Confidence 67899998 99
Q ss_pred cEEEEcChhHHHHHHhc-CCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCCc-ceEEecccc--cc
Q 002352 675 NVGYRKDSFVFGILKQL-GFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYCS-KYTLIERTF--ET 750 (932)
Q Consensus 675 ~vg~~~~s~~~~~l~~~-~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~-~l~~~~~~~--~~ 750 (932)
+||+..|+....++++. + ...++..+.+.++++++|.+|+ +|+++.+...+.+++++... ++.+++... ..
T Consensus 149 ~i~~~~g~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (272)
T 2pvu_A 149 TIGVQNATTGQEAAEKLFG-KGPHIKKFETTVVAIMELLNGG----VDAVITDNAVANEYVKNNPNKKLQVIEDPKNFAS 223 (272)
T ss_dssp CEEEETTSHHHHHHHHHHC-SSTTEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCC
T ss_pred eEEEEcCchHHHHHHHhcC-CCCeEEEcCCHHHHHHHHHcCC----ccEEEeCHHHHHHHHHhCCCCceEEeccccccCC
Confidence 99999999888888764 3 3456778899999999999999 99999999888888776632 377776653 56
Q ss_pred cceEEEecCCCCChHHHHHHHHhhhccchHHHHHHHhccC
Q 002352 751 AGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKK 790 (932)
Q Consensus 751 ~~~~~~~~k~s~l~~~in~~il~l~e~G~~~~~~~~~~~~ 790 (932)
..++++++|+..+.+.+|++|.++.++|.++++.++|+..
T Consensus 224 ~~~~~~~~k~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 263 (272)
T 2pvu_A 224 EYYGMIFPKNSELKAKVDEALKNVINSGKYTEIYKKWFGK 263 (272)
T ss_dssp EEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 6788999999779999999999999999999999999964
No 67
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.79 E-value=9e-19 Score=185.46 Aligned_cols=220 Identities=16% Similarity=0.258 Sum_probs=188.2
Q ss_pred CCCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcC
Q 002352 436 NKRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRG 515 (932)
Q Consensus 436 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g 515 (932)
..++++|++. +.|+||.+.+. ++++.|+++|+++.+++++|+ +++++... |.+++.++.+|
T Consensus 29 ~~~~l~v~~~--~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~g~--~~~~~~~~---------~~~~~~~l~~g 89 (268)
T 3qax_A 29 RNRIWIVGTN--ATYPPFEYVDA------QGEVVGFDIDLAKAISEKLGK--QLEVREFA---------FDALILNLKKH 89 (268)
T ss_dssp --CEEEEEEC--SCBTTTBEECT------TSCEESHHHHHHHHHHHHHTC--EEEEEECC---------GGGHHHHHHHT
T ss_pred cCCeEEEEEC--CCCCCceEECC------CCCEEEEEHHHHHHHHHHhCC--eEEEEecC---------HHHHHHHHhCC
Confidence 3567999984 45667776543 678999999999999999995 46666543 89999999999
Q ss_pred cccEEEeeeeeecccccccccccccc--ccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccC
Q 002352 516 KFDAVVGDTTILANRSKFVEFTLPYT--ESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVN 593 (932)
Q Consensus 516 ~~D~~~~~~~it~~R~~~vdfs~p~~--~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~ 593 (932)
++|++++++..+++|.+.++| .||+ ..+..+++++...
T Consensus 90 ~~D~~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~~--------------------------------------- 129 (268)
T 3qax_A 90 RIDAILAGMSITPSRQKEIAL-LPYYGDEVQELMVVSKRSL--------------------------------------- 129 (268)
T ss_dssp SSSEECSCCBCCHHHHTTSEE-EEEECCCBCEEEEEEETTS---------------------------------------
T ss_pred CccEEeecCccCHhHhcceee-ecceecccceEEEEECCCC---------------------------------------
Confidence 999998889999999999999 9999 8889999987631
Q ss_pred CCCCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCC
Q 002352 594 EDFRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSG 673 (932)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~ 673 (932)
.+++++||. |
T Consensus 130 --------------------------------------------------------------------~i~~~~dL~--g 139 (268)
T 3qax_A 130 --------------------------------------------------------------------ETPVLPLTQ--Y 139 (268)
T ss_dssp --------------------------------------------------------------------CSCCCCGGG--S
T ss_pred --------------------------------------------------------------------CCCCHHHhC--C
Confidence 278999998 9
Q ss_pred CcEEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCCcceEEecccccccc-
Q 002352 674 DNVGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYCSKYTLIERTFETAG- 752 (932)
Q Consensus 674 ~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 752 (932)
+++|+..|+....++.+ .+..++..+++.++++++|.+|+ +|+++.+...+.++++++.. +.+++..+....
T Consensus 140 ~~i~~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 212 (268)
T 3qax_A 140 SSVAVQTGTYQEHYLLS--QPGICVRSFDSTLEVIMEVRYGK----SPVAVLEPSVGRVVLKDFPN-LVATRLELPPECW 212 (268)
T ss_dssp SCEEEETTSHHHHHHHT--STTCCEEEESCHHHHHHHHHTTS----SSEEEECHHHHHHHGGGCTT-EEEEEEECCGGGC
T ss_pred CEEEEecCcHHHHHHHh--CCCceEEecCCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhCCC-cEEecCccCcccc
Confidence 99999999999988887 44557778999999999999999 99999999999998888765 777777777777
Q ss_pred ---eEEEecCCCC-ChHHHHHHHHhhhccchHHHHHHHhccCC
Q 002352 753 ---FGFAFPLHSP-LVPEVSRAILNVTEGNKMKEIEDEWFKKR 791 (932)
Q Consensus 753 ---~~~~~~k~s~-l~~~in~~il~l~e~G~~~~~~~~~~~~~ 791 (932)
++++++|+++ +++.+|++|.++.++|.++++.++|+...
T Consensus 213 ~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~ 255 (268)
T 3qax_A 213 VLGCGLGVAKDRPEEIQTIQQAITDLKSEGVIQSLTKKWQLSE 255 (268)
T ss_dssp BCCEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred cccEEEEEeCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHcCCc
Confidence 9999999876 89999999999999999999999999653
No 68
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.78 E-value=5.6e-19 Score=189.31 Aligned_cols=226 Identities=17% Similarity=0.233 Sum_probs=187.9
Q ss_pred CCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHH----CCC-cccEEEEeccCCCCCCCCCHHHHHHH
Q 002352 437 KRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEE----LPY-AVAYDFVPYAQPDGTSSGSYNDLMYQ 511 (932)
Q Consensus 437 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~----l~f-~~~~~~~~~~~~~g~~ngs~~~li~~ 511 (932)
.++|+|++. +.|+||.+.+. ++++.|+++|+++++++. +|. .+++++++.. |..++.+
T Consensus 16 ~~~l~v~~~--~~~~P~~~~~~------~g~~~G~~~dl~~~ia~~l~~~~G~~~~~v~~~~~~---------~~~~~~~ 78 (287)
T 2vha_A 16 NGVIVVGHR--ESSVPFSYYDN------QQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPIT---------SQNRIPL 78 (287)
T ss_dssp HTEEEEEEC--SEETTTEEECS------SSCEESHHHHHHHHHHHHHHHHTTCTTCEEEEEECC---------TTTHHHH
T ss_pred CCeEEEEEc--CCCCCceEECC------CCCcccccHHHHHHHHHHHHHhcCCCCceEEEEECC---------HHHHHHH
Confidence 467999995 34667777653 678999999999999976 562 1456776653 7889999
Q ss_pred HHcCcccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcc
Q 002352 512 VFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHR 591 (932)
Q Consensus 512 l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~ 591 (932)
|.+|++|+++++++.+++|.+.++||.||+..+.++++++..+
T Consensus 79 l~~g~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~------------------------------------- 121 (287)
T 2vha_A 79 LQNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGD------------------------------------- 121 (287)
T ss_dssp HHTTSCSEECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTSS-------------------------------------
T ss_pred HHCCCeeEEeccccCCcchhhcccccceeeecceEEEEECCCC-------------------------------------
Confidence 9999999998888999999999999999999999999986531
Q ss_pred cCCCCCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHh
Q 002352 592 VNEDFRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIK 671 (932)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~ 671 (932)
|++++||.
T Consensus 122 -----------------------------------------------------------------------i~sl~dL~- 129 (287)
T 2vha_A 122 -----------------------------------------------------------------------IKDFADLK- 129 (287)
T ss_dssp -----------------------------------------------------------------------CCSGGGGT-
T ss_pred -----------------------------------------------------------------------CCCHHHcC-
Confidence 78999998
Q ss_pred CCCcEEEEcChhHHHHHHhcC---CCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccC--CcceEEecc
Q 002352 672 SGDNVGYRKDSFVFGILKQLG---FDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQY--CSKYTLIER 746 (932)
Q Consensus 672 ~~~~vg~~~~s~~~~~l~~~~---~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~--~~~l~~~~~ 746 (932)
|++||+..|+....++++.. ....+++.+.+.++++++|.+|+ +|+++.+...+.+++++. ...+.+++.
T Consensus 130 -g~~v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~ 204 (287)
T 2vha_A 130 -GKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGR----AVAFMMDDALLAGERAKAKKPDNWDIVGK 204 (287)
T ss_dssp -TCEEEEETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHHTTSSSGGGEEEESC
T ss_pred -CCEEEEeCCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCC----eeEEEeChHHHHHHHHhCCCCCceEecCC
Confidence 99999999998887776531 12346778899999999999999 999999988888888764 235888887
Q ss_pred cccccceEEEecCCCC-ChHHHHHHHHhhhccchHHHHHHHhccCCCC
Q 002352 747 TFETAGFGFAFPLHSP-LVPEVSRAILNVTEGNKMKEIEDEWFKKRAS 793 (932)
Q Consensus 747 ~~~~~~~~~~~~k~s~-l~~~in~~il~l~e~G~~~~~~~~~~~~~~~ 793 (932)
.+....++++++|+++ ++..||++|.++.++|.++++.++|+.....
T Consensus 205 ~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~~ 252 (287)
T 2vha_A 205 PQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKNPIP 252 (287)
T ss_dssp CSCEEEEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHSCBT
T ss_pred ccccCceEEEEeCCCHHHHHHHHHHHHHHHhCchHHHHHHHHcCCCCC
Confidence 7777889999999876 9999999999999999999999999975433
No 69
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.78 E-value=4.8e-19 Score=187.64 Aligned_cols=223 Identities=23% Similarity=0.365 Sum_probs=185.8
Q ss_pred CCcEEEEeecccCcccceEEE-ecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcC
Q 002352 437 KRKLRIGVPVTKGFSDFVKVT-IDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRG 515 (932)
Q Consensus 437 ~~~l~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g 515 (932)
.++++|++. +.|+||.+.+ .+ + ++++.|+++|+++.+++++|+ ++++++. +|..++.++.+|
T Consensus 38 ~~~l~v~~~--~~~~P~~~~~~~~---~-~g~~~G~~~dl~~~~~~~~g~--~~~~~~~---------~~~~~~~~l~~g 100 (269)
T 4i62_A 38 KGKLVVALN--PDFAPFEYQKVVD---G-KNQIVGSDIELAKAIATELGV--ELELSPM---------SFDNVLASVQSG 100 (269)
T ss_dssp HTEEEEEEC--SCBTTTBEEEEET---T-EEEEESHHHHHHHHHHHHHTC--EEEEEEC---------CHHHHHHHHHTT
T ss_pred CCeEEEEec--CCCCCceeecccC---C-CCcEeeecHHHHHHHHHHHCC--ceEEEEc---------CHHHHHHHHhCC
Confidence 457999985 4566777621 11 1 678999999999999999995 4666654 399999999999
Q ss_pred cccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 002352 516 KFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNED 595 (932)
Q Consensus 516 ~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~~ 595 (932)
++|++++++..+++|.+.+.|+.||+....++++++....
T Consensus 101 ~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~---------------------------------------- 140 (269)
T 4i62_A 101 KADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDLA---------------------------------------- 140 (269)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCCEECCEEEEEEGGGTT----------------------------------------
T ss_pred CccEEecCCcCCHhHhhceecccchhhcceEEEEECCccc----------------------------------------
Confidence 9999998899999999999999999999999999876322
Q ss_pred CCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCCc
Q 002352 596 FRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGDN 675 (932)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~ 675 (932)
.|++++||. |++
T Consensus 141 ------------------------------------------------------------------~i~~~~dL~--g~~ 152 (269)
T 4i62_A 141 ------------------------------------------------------------------TYQSVNDLA--QKK 152 (269)
T ss_dssp ------------------------------------------------------------------TCSSGGGGC---CE
T ss_pred ------------------------------------------------------------------cccCHHHhC--CCe
Confidence 288999998 999
Q ss_pred EEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCCcceEEeccccc---ccc
Q 002352 676 VGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYCSKYTLIERTFE---TAG 752 (932)
Q Consensus 676 vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~ 752 (932)
||+..|+....++.+. .+..++..+++.++++++|.+|+ +|+++.+...+.++++++.. +.+....+. ..+
T Consensus 153 i~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 226 (269)
T 4i62_A 153 VGAQKGSIQETMAKDL-LQNSSLVSLPKNGNLITDLKSGQ----VDAVIFEEPVAKGFVENNPD-LAIADLNFEKEQDDS 226 (269)
T ss_dssp EEEETTSHHHHHHHHH-CTTSEEEEESCHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHCTT-EEECSCCCCC-CCCE
T ss_pred EEEecCchHHHHHHHh-CCCCcEEecCCHHHHHHHHHcCC----CCEEEeChHHHHHHHHhCCC-CeEEeeccCCCcccc
Confidence 9999999998888774 44567888999999999999999 99999999888888887654 455543333 667
Q ss_pred eEEEecCCCC-ChHHHHHHHHhhhccchHHHHHHHhccC
Q 002352 753 FGFAFPLHSP-LVPEVSRAILNVTEGNKMKEIEDEWFKK 790 (932)
Q Consensus 753 ~~~~~~k~s~-l~~~in~~il~l~e~G~~~~~~~~~~~~ 790 (932)
++++++|++| +.+.+|++|.++.++|.++++.++|++.
T Consensus 227 ~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 265 (269)
T 4i62_A 227 YAVAMKKDSKELKEAVDKTIQKLKESGELDKLIEDAFKA 265 (269)
T ss_dssp ECCEEESSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHHhCC
Confidence 8899999875 9999999999999999999999999964
No 70
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.78 E-value=6.2e-19 Score=188.45 Aligned_cols=219 Identities=18% Similarity=0.281 Sum_probs=186.8
Q ss_pred CCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCc
Q 002352 437 KRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGK 516 (932)
Q Consensus 437 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~ 516 (932)
.++|+|++. +.|+||.+.+. ++.+.|+++|+++.+++++|++ ++++.+. |..++.+|.+|+
T Consensus 56 ~~~l~v~~~--~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~G~~--v~~~~~~---------~~~~~~~l~~G~ 116 (283)
T 2yln_A 56 KGTVTVGTE--GTYAPFTYHDK------DGKLTGYDVEVTRAVAEKLGVK--VEFKETQ---------WDSMMAGLKAGR 116 (283)
T ss_dssp TCEEEEEEC--SEETTTEEECT------TSCEESHHHHHHHHHHHHHTCE--EEEEECC---------GGGHHHHHHHTS
T ss_pred CCeEEEEEC--CCCCCeeEECC------CCCEeeehHHHHHHHHHHcCCc--eEEEECC---------HHHHHHHHHCCC
Confidence 467999984 34677777653 6689999999999999999954 6666543 889999999999
Q ss_pred ccEEEeeeee-eccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 002352 517 FDAVVGDTTI-LANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNED 595 (932)
Q Consensus 517 ~D~~~~~~~i-t~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~~ 595 (932)
+|++++++.+ +++|.+.++|+.||......+++++...
T Consensus 117 ~D~~~~~~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~~----------------------------------------- 155 (283)
T 2yln_A 117 FDVVANQVGLTSPERQATFDKSEPYSWSGAVLVAHNDSN----------------------------------------- 155 (283)
T ss_dssp CSEECSSCCCCSHHHHHHEEECSCSEEECEEEEEETTCS-----------------------------------------
T ss_pred cCEEEecCccCChhhhcceEeccCeeeecEEEEEECCCC-----------------------------------------
Confidence 9999888888 9999999999999999999999986531
Q ss_pred CCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCCc
Q 002352 596 FRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGDN 675 (932)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~ 675 (932)
|++++||. |++
T Consensus 156 -------------------------------------------------------------------i~s~~dL~--G~~ 166 (283)
T 2yln_A 156 -------------------------------------------------------------------IKSIADIK--GVK 166 (283)
T ss_dssp -------------------------------------------------------------------CCSGGGCT--TSE
T ss_pred -------------------------------------------------------------------CCCHHHhC--CCE
Confidence 78899997 999
Q ss_pred EEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCC-cceEEec-cccc-ccc
Q 002352 676 VGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYC-SKYTLIE-RTFE-TAG 752 (932)
Q Consensus 676 vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~-~~l~~~~-~~~~-~~~ 752 (932)
||+..|+....++++.+ .++..+.+..+++++|.+|+ +|+++.+...+.+++++.. ..+.+++ ..+. ...
T Consensus 167 v~v~~g~~~~~~l~~~~---~~~~~~~~~~~~~~~l~~g~----vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 239 (283)
T 2yln_A 167 TAQSLTSNYGEKAKAAG---AQLVPVDGLAQSLTLIEQKR----ADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVG 239 (283)
T ss_dssp EEECTTSHHHHHHHHTT---CEEEECSSHHHHHHHHHTTS----CCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEE
T ss_pred EEEecCchHHHHHHHcC---CeEEEeCCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhCCCCcEEEccCcccCCccc
Confidence 99999999888888753 36778889999999999999 9999999988888877763 3477777 6666 778
Q ss_pred eEEEecCCCC-ChHHHHHHHHhhhccchHHHHHHHhccCC
Q 002352 753 FGFAFPLHSP-LVPEVSRAILNVTEGNKMKEIEDEWFKKR 791 (932)
Q Consensus 753 ~~~~~~k~s~-l~~~in~~il~l~e~G~~~~~~~~~~~~~ 791 (932)
++++++|+++ +.+.||++|.++.++|.++++.++|++..
T Consensus 240 ~~i~~~k~~~~l~~~i~~al~~l~~~g~~~~i~~k~~~~~ 279 (283)
T 2yln_A 240 SGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGKD 279 (283)
T ss_dssp ECCEEESSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHcCCC
Confidence 8999999875 89999999999999999999999999753
No 71
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.77 E-value=9.4e-19 Score=188.09 Aligned_cols=218 Identities=18% Similarity=0.196 Sum_probs=186.8
Q ss_pred CCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHC---CCcccEEEEeccCCCCCCCCCHHHHHHHHH
Q 002352 437 KRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEEL---PYAVAYDFVPYAQPDGTSSGSYNDLMYQVF 513 (932)
Q Consensus 437 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l---~f~~~~~~~~~~~~~g~~ngs~~~li~~l~ 513 (932)
.++++|++. +.|+||.+.+. ++.+.|+++|+++.+++++ |++ +++++.. |..++.+|.
T Consensus 43 ~~~l~v~~~--~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~~~~g~~--~~~~~~~---------~~~~~~~l~ 103 (292)
T 1xt8_A 43 NGVVRIGVF--GDKPPFGYVDE------KGNNQGYDIALAKRIAKELFGDENK--VQFVLVE---------AANRVEFLK 103 (292)
T ss_dssp HSSEEEEEC--SEETTTEEECT------TSCEESHHHHHHHHHHHHHHSCTTC--EEEEECC---------GGGHHHHHH
T ss_pred CCeEEEEEC--CCCCCeeEECC------CCCEeeEhHHHHHHHHHHhccCCce--EEEEEcC---------HHHHHHHHh
Confidence 457999984 34667776543 6789999999999999999 955 6666543 789999999
Q ss_pred cCcccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccC
Q 002352 514 RGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVN 593 (932)
Q Consensus 514 ~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~ 593 (932)
+|++|++++++..+++|.+.+.|+.||...+.++++++..
T Consensus 104 ~G~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~---------------------------------------- 143 (292)
T 1xt8_A 104 SNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDS---------------------------------------- 143 (292)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECCCCEEEEEEEEEETTC----------------------------------------
T ss_pred CCCeeEEeecCCCCcchhcceeeeccceecceEEEEECCC----------------------------------------
Confidence 9999999888889999999999999999999999998653
Q ss_pred CCCCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCC
Q 002352 594 EDFRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSG 673 (932)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~ 673 (932)
.+++++||. |
T Consensus 144 --------------------------------------------------------------------~i~~~~dL~--g 153 (292)
T 1xt8_A 144 --------------------------------------------------------------------NITSVEDLK--D 153 (292)
T ss_dssp --------------------------------------------------------------------CCCSSGGGT--T
T ss_pred --------------------------------------------------------------------CCCCHHHhC--C
Confidence 178899998 9
Q ss_pred CcEEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCCcceEEecccccccce
Q 002352 674 DNVGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYCSKYTLIERTFETAGF 753 (932)
Q Consensus 674 ~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 753 (932)
+++|+..|+....++++. .+..+++.+.+.++++++|.+|+ +|+++.+...+.+++++... +.+++..+....+
T Consensus 154 ~~i~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~L~~G~----vDa~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~ 227 (292)
T 1xt8_A 154 KTLLLNKGTTADAYFTQN-YPNIKTLKYDQNTETFAALMDKR----GDALSHDNTLLFAWVKDHPD-FKMGIKELGNKDV 227 (292)
T ss_dssp SEEEEETTSHHHHHHHHH-CTTSEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHCTT-EEEEEEEEEEEEE
T ss_pred CEEEEeCCCcHHHHHHHh-CCCceEEEcCCHHHHHHHHHcCC----ccEEEecHHHHHHHHHhCCC-eEEcccccccCce
Confidence 999999999988888775 34456778899999999999999 99999999888888887654 7777766667777
Q ss_pred -EEEecCCCC-ChHHHHHHHHhhhccchHHHHHHHhcc
Q 002352 754 -GFAFPLHSP-LVPEVSRAILNVTEGNKMKEIEDEWFK 789 (932)
Q Consensus 754 -~~~~~k~s~-l~~~in~~il~l~e~G~~~~~~~~~~~ 789 (932)
+++++|+++ +...+|++|.++.++|.++++.++|+.
T Consensus 228 ~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 265 (292)
T 1xt8_A 228 IAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLK 265 (292)
T ss_dssp ECCEEETTCHHHHHHHHHHHHHHHTTTHHHHHHHHHTG
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhcC
Confidence 899999876 999999999999999999999999996
No 72
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.77 E-value=1.3e-18 Score=186.83 Aligned_cols=218 Identities=19% Similarity=0.257 Sum_probs=187.6
Q ss_pred CCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHC---CCcccEEEEeccCCCCCCCCCHHHHHHHHH
Q 002352 437 KRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEEL---PYAVAYDFVPYAQPDGTSSGSYNDLMYQVF 513 (932)
Q Consensus 437 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l---~f~~~~~~~~~~~~~g~~ngs~~~li~~l~ 513 (932)
.++|+|++. +.|+||.+.+. ++++.|+++|+++.+++++ |+ +++++... |..++..|.
T Consensus 54 ~~~l~vg~~--~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~~~~g~--~v~~~~~~---------~~~~~~~l~ 114 (291)
T 2yjp_A 54 KGVIRIGVF--GDKPPFGYVDA------NGKNQGFDVEIAKDLAKDLLGSPD--KVEFVLTE---------AANRVEYVR 114 (291)
T ss_dssp HTCEEEEEC--SEETTTEEECT------TSCEESHHHHHHHHHHHHHHSCGG--GEEEEECC---------GGGHHHHHH
T ss_pred CCeEEEEEc--CCCCCceEECC------CCCEeehHHHHHHHHHHHhccCCc--eEEEEEcc---------HHHHHHHHh
Confidence 357999985 44667776653 6789999999999999999 85 56666643 789999999
Q ss_pred cCcccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccC
Q 002352 514 RGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVN 593 (932)
Q Consensus 514 ~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~ 593 (932)
+|++|++++++..+++|.+.++|+.||......+++++.. .
T Consensus 115 ~G~~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~--~------------------------------------- 155 (291)
T 2yjp_A 115 SGKVDLILANFTQTPERAEAVDFADPYMKVALGVVSPKNK--P------------------------------------- 155 (291)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTS--C-------------------------------------
T ss_pred CCCeeEEEeCCCCChHHHccceeccCeeecceEEEEeCCC--C-------------------------------------
Confidence 9999999888889999999999999999999999998663 1
Q ss_pred CCCCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCC
Q 002352 594 EDFRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSG 673 (932)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~ 673 (932)
|++++||. |
T Consensus 156 ---------------------------------------------------------------------i~sl~dL~--g 164 (291)
T 2yjp_A 156 ---------------------------------------------------------------------ITDMAQLK--D 164 (291)
T ss_dssp ---------------------------------------------------------------------CCSGGGGT--T
T ss_pred ---------------------------------------------------------------------CCCHHHhC--C
Confidence 78999998 9
Q ss_pred CcEEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCCcceEEecccccccce
Q 002352 674 DNVGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYCSKYTLIERTFETAGF 753 (932)
Q Consensus 674 ~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 753 (932)
++||+..|+....++++. .+..+++.+.+.++++++|.+|+ +||++.+.+.+.+++++... +.++...+....+
T Consensus 165 k~v~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 238 (291)
T 2yjp_A 165 QTLLVNKGTTADAFFTKS-HPEVKLLKFDQNTETFDALKDGR----GVALAHDNALLWAWAKENPN-FEVAIGNLGPAEF 238 (291)
T ss_dssp SEEEEETTSHHHHHHHHH-CTTSEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHCTT-EEEEECCSSSCEE
T ss_pred CEEEEecCCcHHHHHHHh-CCCceEEEeCCHHHHHHHHHcCC----ccEEEecHHHHHHHHHhCCC-eEEcCCcccCCcc
Confidence 999999999988888775 34456778899999999999999 99999999888888877654 7777777777777
Q ss_pred -EEEecCCCC-ChHHHHHHHHhhhccchHHHHHHHhcc
Q 002352 754 -GFAFPLHSP-LVPEVSRAILNVTEGNKMKEIEDEWFK 789 (932)
Q Consensus 754 -~~~~~k~s~-l~~~in~~il~l~e~G~~~~~~~~~~~ 789 (932)
+++++|++| +...||++|.++.++|.++++.++|+.
T Consensus 239 ~~~~~~k~~~~l~~~l~~al~~l~~~g~~~~i~~k~~~ 276 (291)
T 2yjp_A 239 IAPAVQKGNADLLNWVNGEIAAMKKDGRLKAAYEKTLL 276 (291)
T ss_dssp ECCEEETTCHHHHHHHHHHHHHHHHHSHHHHHHHHHTH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHhcc
Confidence 999999876 999999999999999999999999996
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.65 E-value=1.7e-16 Score=166.90 Aligned_cols=214 Identities=14% Similarity=0.283 Sum_probs=175.2
Q ss_pred CCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHC---CCcccEEEEeccCCCCCCCCCHHHHHHHHH
Q 002352 437 KRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEEL---PYAVAYDFVPYAQPDGTSSGSYNDLMYQVF 513 (932)
Q Consensus 437 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l---~f~~~~~~~~~~~~~g~~ngs~~~li~~l~ 513 (932)
.++|+||+. +.++||.+.+.+ ++++.|+++|+++.+++++ |+ +++++... |.+++..|.
T Consensus 37 ~~~l~vg~~--~~~~p~~~~~~~-----~g~~~G~~~~l~~~~~~~~~~pg~--~v~~~~~~---------~~~~~~~l~ 98 (259)
T 2v25_A 37 KGQLIVGVK--NDVPHYALLDQA-----TGEIKGFEVDVAKLLAKSILGDDK--KIKLVAVN---------AKTRGPLLD 98 (259)
T ss_dssp HTCEEEEEC--SEETTTEEEETT-----TTEEESHHHHHHHHHHHHHHSCTT--SEEEEECC---------TTTHHHHHH
T ss_pred CCeEEEEEC--CCCCCeEEEECC-----CCeEEEeeHHHHHHHHHHhcCCCc--ceEEEEcC---------HHHHHHHHh
Confidence 457999984 445677765411 5689999999999999999 85 46666543 788999999
Q ss_pred cCcccEEEeeeeeeccccccccccccccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccC
Q 002352 514 RGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVN 593 (932)
Q Consensus 514 ~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~ 593 (932)
+|++|++++++..+++|.+.++|+.||.....++++++..+
T Consensus 99 ~g~~D~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--------------------------------------- 139 (259)
T 2v25_A 99 NGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKK--------------------------------------- 139 (259)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEEGGGC---------------------------------------
T ss_pred CCCCCEEEecCccCHHHHhcCcccccceeCceEEEEeCCCC---------------------------------------
Confidence 99999998888889999999999999999999999986531
Q ss_pred CCCCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCC
Q 002352 594 EDFRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSG 673 (932)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~ 673 (932)
+++++||. |
T Consensus 140 ---------------------------------------------------------------------i~~~~dL~--g 148 (259)
T 2v25_A 140 ---------------------------------------------------------------------YKSLADMK--G 148 (259)
T ss_dssp ---------------------------------------------------------------------CCSGGGCT--T
T ss_pred ---------------------------------------------------------------------CCCHHHhC--C
Confidence 67899998 8
Q ss_pred CcEEEEcChhHHHHHHh----cCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCCcceEEeccccc
Q 002352 674 DNVGYRKDSFVFGILKQ----LGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYCSKYTLIERTFE 749 (932)
Q Consensus 674 ~~vg~~~~s~~~~~l~~----~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~ 749 (932)
+++++..|+....++++ .+.+ .++..+.+.++.+++|..|+ +|+++.+...+.++++++.. +++..+.
T Consensus 149 ~~i~~~~g~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~---~~~~~~~ 220 (259)
T 2v25_A 149 ANIGVAQAATTKKAIGEAAKKIGID-VKFSEFPDYPSIKAALDAKR----VDAFSVDKSILLGYVDDKSE---ILPDSFE 220 (259)
T ss_dssp CEEEEETTCSHHHHHHHHHHHTTCC-CEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHTTTCCTTEE---ECSCCCS
T ss_pred CEEEEecCCchHHHHHHHHHhcCCc-eeEEEeCCHHHHHHHHHcCC----CcEEEecHHHHHHHHHhCCC---ccccccc
Confidence 99999999877766554 2332 25567889999999999999 99999998888887776543 4555666
Q ss_pred ccceEEEecCCC-CChHHHHHHHHhhhccchHHHHHHHhc
Q 002352 750 TAGFGFAFPLHS-PLVPEVSRAILNVTEGNKMKEIEDEWF 788 (932)
Q Consensus 750 ~~~~~~~~~k~s-~l~~~in~~il~l~e~G~~~~~~~~~~ 788 (932)
...++++++|+. .+.+.+|++|.++.++ ++++.+||.
T Consensus 221 ~~~~~~~~~k~~~~l~~~~~~~l~~~~~~--~~~i~~k~~ 258 (259)
T 2v25_A 221 PQSYGIVTKKDDPAFAKYVDDFVKEHKNE--IDALAKKWG 258 (259)
T ss_dssp EEEECCEEETTCHHHHHHHHHHHHHTHHH--HHHHHHHTT
T ss_pred cceeEEEEcCCCHHHHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 678889999987 5999999999999999 899999985
No 74
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.67 E-value=1.7e-08 Score=100.55 Aligned_cols=182 Identities=9% Similarity=0.061 Sum_probs=134.1
Q ss_pred CceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecc------ccccccccc
Q 002352 465 SASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILAN------RSKFVEFTL 538 (932)
Q Consensus 465 ~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~------R~~~vdfs~ 538 (932)
..++.|+.--|.+.+. | +++++.... .+++.+..|.+|++|+++.+++.+++ |...++|+.
T Consensus 27 s~~yeGlatgl~~~f~---g--i~~~i~~mr--------g~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~ 93 (231)
T 2ozz_A 27 TRLYEGLASGLKAQFD---G--IPFYYAHMR--------GADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGP 93 (231)
T ss_dssp SHHHHHHHHHHHHTTT---T--SCEEEEECS--------CHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCT
T ss_pred hhhhhHHHHHHHHHhc---C--CcEEEEEcc--------ChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCC
Confidence 4578898888888773 5 557776663 38999999999999999999999999 999999999
Q ss_pred cccccCeEEEEEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCCCCCCcccccccchhhhHHHHhhhc
Q 002352 539 PYTESGVSMIVPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGPAQHQVGTSFWFSFSTMVFS 618 (932)
Q Consensus 539 p~~~~~~~~lv~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 618 (932)
||+.+...++++++....
T Consensus 94 ~yYv~~h~li~~~~~~~~-------------------------------------------------------------- 111 (231)
T 2ozz_A 94 HTYVGEHQLICRKGESGN-------------------------------------------------------------- 111 (231)
T ss_dssp TSSSCCEEEEEETTCGGG--------------------------------------------------------------
T ss_pred CccccCeEEEEeCCCccc--------------------------------------------------------------
Confidence 999888888887663221
Q ss_pred CcccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCCcEEEEcChhHHHHHHhcCCCcccc
Q 002352 619 HRERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGDNVGYRKDSFVFGILKQLGFDEKKL 698 (932)
Q Consensus 619 ~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~ 698 (932)
| ++||+..||..+..+.+..+....+
T Consensus 112 --------------------------------------------i----------krVGvd~gS~dq~~lt~~~~~g~~V 137 (231)
T 2ozz_A 112 --------------------------------------------V----------KRVGLDSRSADQKIMTDVFFGDSDV 137 (231)
T ss_dssp --------------------------------------------C----------CEEEECTTCHHHHHHHHHHHTTSCC
T ss_pred --------------------------------------------c----------EEEEecCCChhHHHHHhhhcCCCeE
Confidence 3 7899999999888887744444456
Q ss_pred ccc-CCHHHHHHHhhcccCCCceeEEEe--cccccccccccCCcceE--Eecc---cccccceEEEecCCC-CChHHHHH
Q 002352 699 IAY-SSPEECDELFQKGSAGGGIAAAFD--EIPYTKPFIGQYCSKYT--LIER---TFETAGFGFAFPLHS-PLVPEVSR 769 (932)
Q Consensus 699 ~~~-~~~~~~~~~l~~g~~~~g~~a~~~--~~~~~~~~~~~~~~~l~--~~~~---~~~~~~~~~~~~k~s-~l~~~in~ 769 (932)
..+ .+..+++++|.+|+ +||++. +.+... +..+ +. .+.. ........++++||. .+.+.+|+
T Consensus 138 e~ve~~y~~~i~~L~~G~----IDA~Iwn~d~~~a~----~~~~-l~~~~l~~~~~~~~~~eavI~v~k~n~~L~~~ln~ 208 (231)
T 2ozz_A 138 ERVDLSYHESLQRIVKGD----VDAVIWNVVAENEL----TMLG-LEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRA 208 (231)
T ss_dssp EEEECCHHHHHHHHHHTS----CCEEEEEC-CHHHH----HHTT-EEEEECCSCHHHHHTTCEEEEEETTCHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHcCC----ccEEEEcCcchhhh----cCCC-cceeccccccccccCCceEEEEECCCHHHHHHHHH
Confidence 677 78899999999999 999999 655433 1111 22 1222 234455668899985 56666665
Q ss_pred HHHhhhccchHHHHHHHhc
Q 002352 770 AILNVTEGNKMKEIEDEWF 788 (932)
Q Consensus 770 ~il~l~e~G~~~~~~~~~~ 788 (932)
.| +...+..+.++-.
T Consensus 209 ~I----~~~~v~~~Q~~V~ 223 (231)
T 2ozz_A 209 VV----DKHALLAHQQRVV 223 (231)
T ss_dssp HC----CHHHHHHHHHHHH
T ss_pred Hh----HHHHHHHHHHHHH
Confidence 54 4456666666665
No 75
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.66 E-value=5.6e-08 Score=104.17 Aligned_cols=122 Identities=11% Similarity=0.026 Sum_probs=85.6
Q ss_pred CCCHHHHHh--CCCcEEE-EcChh----HHHH-H-HhcCCCc---ccccccCCHHHHHHHhhcccCCCceeEEEeccccc
Q 002352 663 ITDFQMLIK--SGDNVGY-RKDSF----VFGI-L-KQLGFDE---KKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYT 730 (932)
Q Consensus 663 i~s~~dL~~--~~~~vg~-~~~s~----~~~~-l-~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~ 730 (932)
|++++||++ .|+++++ ..++. ...+ | ++.+.+. ...+.+.+.++.+.+|..|+ +++.+.+...+
T Consensus 104 i~sl~DL~~~~kgk~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~G~----vDa~~~~~~~~ 179 (310)
T 3n5l_A 104 IDSLEDMLANAKSLTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVANKQ----VDVATFNTEGM 179 (310)
T ss_dssp CCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHTTS----SSEEEEEHHHH
T ss_pred CCCHHHHhhhcCCCEEEecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHcCC----ccEEEecchhH
Confidence 899999932 2778886 33332 2221 2 3334432 12233467778999999999 99999988877
Q ss_pred ccccccC---CcceEEecccccccceEEEecCCCC--ChHHHHHHHHhhhccchHHHHHHHhc
Q 002352 731 KPFIGQY---CSKYTLIERTFETAGFGFAFPLHSP--LVPEVSRAILNVTEGNKMKEIEDEWF 788 (932)
Q Consensus 731 ~~~~~~~---~~~l~~~~~~~~~~~~~~~~~k~s~--l~~~in~~il~l~e~G~~~~~~~~~~ 788 (932)
..+.++. ..+++++........++++++++-| +++.++++|.++.++|...++.+++-
T Consensus 180 ~~~~~~~~~~~~~lrvl~~s~~~p~~~i~~~~~~~~~l~~~l~~al~~~~~d~~~~~~l~~~g 242 (310)
T 3n5l_A 180 ERLELTQPEKARQLKVIWKSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYGANAEQKKVLADLQ 242 (310)
T ss_dssp HHHHHHCHHHHTTEEEEEEEEEEECCEEEEETTSCHHHHHHHHHHHHHCCCSHHHHHHHHHTT
T ss_pred HHHHHhCccchhCEEEEEECCCCCCCcEEEECCCCHHHHHHHHHHHHhcCCChhHHHHHHhcC
Confidence 7777654 1346666554444567899999843 89999999999999999888888764
No 76
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.61 E-value=1e-07 Score=102.42 Aligned_cols=122 Identities=10% Similarity=0.050 Sum_probs=86.6
Q ss_pred CCCHHHHHh--CCCcEEE-EcChh----HHHH--HHhcCCCccc--ccccCCHHHHHHHhhcccCCCceeEEEecccccc
Q 002352 663 ITDFQMLIK--SGDNVGY-RKDSF----VFGI--LKQLGFDEKK--LIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTK 731 (932)
Q Consensus 663 i~s~~dL~~--~~~~vg~-~~~s~----~~~~--l~~~~~~~~~--~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~ 731 (932)
|++++||++ .|+++++ ..++. .... +++.+.+... .+.+.+..+.+.+|..|+ +|+.+.+...+.
T Consensus 114 i~sl~DL~~~~kgk~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~G~----vDa~~~~~~~~~ 189 (321)
T 3p7i_A 114 INNLNDLLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVANKQ----VDVATNNTENLD 189 (321)
T ss_dssp CCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHTTS----SSEEEEEHHHHH
T ss_pred CCCHHHHHhhcCCCEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHCCC----ceEEEechHHHH
Confidence 899999932 2678885 33432 2222 2444544322 234567788999999999 999999887777
Q ss_pred cccccC---CcceEEecccccccceEEEecCCC--CChHHHHHHHHhhhccchHHHHHHHhc
Q 002352 732 PFIGQY---CSKYTLIERTFETAGFGFAFPLHS--PLVPEVSRAILNVTEGNKMKEIEDEWF 788 (932)
Q Consensus 732 ~~~~~~---~~~l~~~~~~~~~~~~~~~~~k~s--~l~~~in~~il~l~e~G~~~~~~~~~~ 788 (932)
.+.++. ..+++++........++++++|+- .++..|+++|.++.++|...++.+++-
T Consensus 190 ~~~~~~p~~~~~lrvl~~s~~~p~~~i~~~k~~~~~l~~~l~~aL~~~~~d~~~~~~l~~~g 251 (321)
T 3p7i_A 190 KLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERLG 251 (321)
T ss_dssp THHHHCHHHHTTEEEEEECSCBCCCEEEEETTSCHHHHHHHHHHHHHTTCSHHHHHHHHHHT
T ss_pred HHHHhCcchhccEEEEEEcCCCCCCceeeeCCCCHHHHHHHHHHHHhcCCCHHHHHHHHhcC
Confidence 776653 234777765544556789999984 399999999999999999888887763
No 77
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=98.38 E-value=5.2e-06 Score=88.25 Aligned_cols=210 Identities=13% Similarity=0.017 Sum_probs=133.4
Q ss_pred CCccEEEEEEEeC---CCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccC
Q 002352 15 TTIPVNVGLVLDM---NGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPE 91 (932)
Q Consensus 15 ~~~~i~IG~i~~~---s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~ 91 (932)
...+.+||+++|. ++.+......+++.++++. |++ +.+.+...++....+....++.+ +|++||...
T Consensus 16 ~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~-------g~~--~~~~~~~~~~~~~~~~~~~l~~~-~vdgii~~~ 85 (296)
T 3brq_A 16 AKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK-------GRQ--LLLADGKHSAEEERQAIQYLLDL-RCDAIMIYP 85 (296)
T ss_dssp ---CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT-------TCE--EEEECCTTSHHHHHHHHHHHHHT-TCSEEEEEC
T ss_pred cCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHC-------CCE--EEEEeCCCCHHHHHHHHHHHHhc-CCCEEEEec
Confidence 3456889999996 4466667777887777653 344 44567777887767777777765 899888743
Q ss_pred ChhHHHHHHHhcCC-CCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcC--CcCCChH
Q 002352 92 KSMQTNFIIQLGNK-SQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDN--QYGEEMI 168 (932)
Q Consensus 92 ~s~~a~~v~~~~~~-~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~ 168 (932)
.......+.. +.. .++|+|.+....+. +.+..+..++...+..+++++...|.+++++|..+. ..+....
T Consensus 86 ~~~~~~~~~~-l~~~~~iPvV~~~~~~~~------~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~ 158 (296)
T 3brq_A 86 RFLSVDEIDD-IIDAHSQPIMVLNRRLRK------NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERL 158 (296)
T ss_dssp SSSCHHHHHH-HHHTCSSCEEEESCCCSS------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHH
T ss_pred CCCChHHHHH-HHhcCCCCEEEEccccCC------CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccHHHHH
Confidence 3222223333 344 79999997643221 233445566667778888998888999999998653 2345567
Q ss_pred HHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 169 PSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 169 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
+.+.+++++.|+.+.....+....+.++....+.++.+. ++++|+ +.+...+..+++++++.|+..|+-+-++
T Consensus 159 ~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 233 (296)
T 3brq_A 159 AGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALV-ASNDDMAIGAMKALHERGVAVPEQVSVI 233 (296)
T ss_dssp HHHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEE-ESSHHHHHHHHHHHHHHTCCTTTTCEEE
T ss_pred HHHHHHHHHcCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 888999999987764332222222334444556666543 466665 4456668889999999998655444343
No 78
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=98.32 E-value=5e-06 Score=88.07 Aligned_cols=207 Identities=10% Similarity=-0.019 Sum_probs=130.8
Q ss_pred CccEEEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChhH
Q 002352 16 TIPVNVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSMQ 95 (932)
Q Consensus 16 ~~~i~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~~ 95 (932)
..+.+||++.|.+..+......+++.++++. |+++. +.++..++....+....++.+ +|++||.......
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~gi~~~~~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~~~ 75 (288)
T 2qu7_A 6 GRSNIIAFIVPDQNPFFTEVLTEISHECQKH-------HLHVA--VASSEENEDKQQDLIETFVSQ-NVSAIILVPVKSK 75 (288)
T ss_dssp -CEEEEEEEESSCCHHHHHHHHHHHHHHGGG-------TCEEE--EEECTTCHHHHHHHHHHHHHT-TEEEEEECCSSSC
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHHHHHHC-------CCEEE--EEeCCCCHHHHHHHHHHHHHc-CccEEEEecCCCC
Confidence 4567899999983344455666666666542 34444 456667777666667777765 8999887444322
Q ss_pred HHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcC--CcCCChHHHHHH
Q 002352 96 TNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDN--QYGEEMIPSLTD 173 (932)
Q Consensus 96 a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l~~ 173 (932)
...+..+ .++|+|.+....+. +.+..+..++...+..+++++...|-+++++|.... .........|.+
T Consensus 76 ~~~~~~l---~~iPvV~~~~~~~~------~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 146 (288)
T 2qu7_A 76 FQMKREW---LKIPIMTLDRELES------TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNK 146 (288)
T ss_dssp CCCCGGG---GGSCEEEESCCCSS------CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred hHHHHHh---cCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 2222233 78999987653321 234456677777888888998888999999998642 234455778889
Q ss_pred HHHhCCceeeeeeec--CCCC----ChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 174 ALQAIDTRVPYRSVI--SPLA----TDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 174 ~l~~~g~~v~~~~~~--~~~~----~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
++++.|+.+.....+ .... +..+-...+.++.+.++++|+. .+...+..+++++++.|+..|+-+-++
T Consensus 147 ~l~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vv 220 (288)
T 2qu7_A 147 AISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSKGIKGIVA-TNHLLLLGALQAIKESEKEIKKDVIIV 220 (288)
T ss_dssp HHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHTTCCEEEE-CSHHHHHHHHHHHHHSSCCBTTTBEEE
T ss_pred HHHHcCCCCCcceEEeccCCccccCCHHHHHHHHHHHHhcCCCEEEE-CCcHHHHHHHHHHHHhCCCCCCceEEE
Confidence 999998765432122 2122 2222334445544447787664 456668889999999998755444443
No 79
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=98.28 E-value=2.5e-05 Score=82.68 Aligned_cols=211 Identities=11% Similarity=0.048 Sum_probs=130.9
Q ss_pred CccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChh
Q 002352 16 TIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSM 94 (932)
Q Consensus 16 ~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~ 94 (932)
....+||++.|..+ .+......+++.++++. |+++. +.++..++....+....++.+ ++++||......
T Consensus 5 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgii~~~~~~ 74 (289)
T 1dbq_A 5 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQK-------GYTLI--LGNAWNNLEKQRAYLSMMAQK-RVDGLLVMCSEY 74 (289)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHH-------TCEEE--EEECTTCHHHHHHHHHHHHHT-TCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHc-------CCeEE--EEcCCCChHHHHHHHHHHHhC-CCCEEEEEeccC
Confidence 44578999998643 55556777888777764 34444 456667777766666777655 898888532221
Q ss_pred HHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEc--CCcCCChHHHHH
Q 002352 95 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVD--NQYGEEMIPSLT 172 (932)
Q Consensus 95 ~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~ 172 (932)
....+..+.+..++|+|.+....+. .++...+..++...+..+++++...|.+++++|..+ ........+.+.
T Consensus 75 ~~~~~~~l~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~ 149 (289)
T 1dbq_A 75 PEPLLAMLEEYRHIPMVVMDWGEAK-----ADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFM 149 (289)
T ss_dssp CHHHHHHHHHTTTSCEEEEECSSCC-----SSSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHHH
T ss_pred CHHHHHHHHhccCCCEEEEccCCCc-----cCcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccHHHHHHHHH
Confidence 1111222222378999997653221 122345566777778888999888899999999754 334566788899
Q ss_pred HHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 173 DALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 173 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
+++++.|+.+.....+....+.++....+.++.+. ++++|+. .+...+..+++++++.|+..|+-+-|+
T Consensus 150 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~di~vv 220 (289)
T 1dbq_A 150 KAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDVSLI 220 (289)
T ss_dssp HHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 99999987654322222222334444556665543 5666654 456678889999999998755443343
No 80
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=98.27 E-value=2.3e-05 Score=83.57 Aligned_cols=189 Identities=10% Similarity=0.081 Sum_probs=123.8
Q ss_pred CCccEEEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChh
Q 002352 15 TTIPVNVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSM 94 (932)
Q Consensus 15 ~~~~i~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~ 94 (932)
++++.+||++.+.++.+-.....|++-++ ++.|...|.++.+.+.|+++++....+.+.+|.++ +|++||.....
T Consensus 5 ~~~t~~IGvi~~~~~p~~~~~~~gi~~~l---~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~-~vDgII~~~~~- 79 (302)
T 2qh8_A 5 MAKTAKVAVSQIVEHPALDATRQGLLDGL---KAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGE-NPDVLVGIATP- 79 (302)
T ss_dssp --CCEEEEEEESSCCHHHHHHHHHHHHHH---HHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHT-CCSEEEEESHH-
T ss_pred ccCCcEEEEEEeccChhHHHHHHHHHHHH---HHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhC-CCCEEEECChH-
Confidence 45678999986555655445566665444 44554557789999999999998888888787765 89999875432
Q ss_pred HHHHHHHhcCCCCccEEecccCCCCcc------CCCCCceEecccCchhHHHHHHHHHHHc--CCeEEEEEEEcCC-cCC
Q 002352 95 QTNFIIQLGNKSQVPILSFSATSPSLT------SIRSSYFFRGSLNDSSQVGAITAIIKAF--GWREAVPIYVDNQ-YGE 165 (932)
Q Consensus 95 ~a~~v~~~~~~~~iP~Is~~a~~~~l~------~~~~p~~~r~~ps~~~~~~ai~~~l~~~--~w~~v~ii~~d~~-~g~ 165 (932)
....+... ..++|+|..+...+... ....+++..+.- ...+...++++... |.+++++|+.... .+.
T Consensus 80 ~~~~~~~~--~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~~--~~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~ 155 (302)
T 2qh8_A 80 TAQALVSA--TKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSD--LSPVEQHVELIKEILPNVKSIGVVYNPGEANAV 155 (302)
T ss_dssp HHHHHHHH--CSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEEC--CCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHH
T ss_pred HHHHHHhc--CCCcCEEEEecCCHhhcCccccccCCCCCEEEEEC--CcCHHHHHHHHHHhCCCCcEEEEEecCCCcchH
Confidence 33333332 67999998765544211 011244444432 22345566777666 9999999996543 345
Q ss_pred ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeC
Q 002352 166 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML 217 (932)
Q Consensus 166 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 217 (932)
...+.+++++++.|+.+...... +.++....+.+|.. ++++|+...+
T Consensus 156 ~r~~g~~~al~~~gi~~~~~~~~----~~~~~~~~~~~l~~-~~dai~~~~D 202 (302)
T 2qh8_A 156 SLMELLKLSAAKHGIKLVEATAL----KSADVQSATQAIAE-KSDVIYALID 202 (302)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECS----SGGGHHHHHHHHGG-GCSEEEECSC
T ss_pred HHHHHHHHHHHHcCCEEEEEecC----ChHHHHHHHHHHhc-cCCEEEECCc
Confidence 56788999999999987654332 23567777888764 7888776544
No 81
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=98.23 E-value=3.1e-05 Score=83.08 Aligned_cols=208 Identities=11% Similarity=0.032 Sum_probs=133.7
Q ss_pred EEEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEc-cCChhHHH
Q 002352 19 VNVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILG-PEKSMQTN 97 (932)
Q Consensus 19 i~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiG-p~~s~~a~ 97 (932)
++||++.|..+.+......+++.++++. |+++.+.. .+..++....+....++.+ ++++||. |..+....
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~-------g~~~~~~~-~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~~~~~~ 72 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKAL-------GVDTKFFV-PQKEDINAQLQMLESFIAE-GVNGIAIAPSDPTAVI 72 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHH-------TCEEEEEC-CSSSCHHHHHHHHHHHHHT-TCSEEEECCSSTTTTH
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHc-------CCEEEEEC-CCCCCHHHHHHHHHHHHHc-CCCEEEEeCCChHHHH
Confidence 5899999865545456677777777764 34554432 2356777777777777765 8888875 44444333
Q ss_pred HHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHc--CCeEEEEEEEc--CCcCCChHHHHHH
Q 002352 98 FIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAF--GWREAVPIYVD--NQYGEEMIPSLTD 173 (932)
Q Consensus 98 ~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~--~w~~v~ii~~d--~~~g~~~~~~l~~ 173 (932)
.....+...++|+|.+....+. .+.+..+..++...+..+++++... |.+++++|... ........+.|.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 147 (313)
T 2h3h_A 73 PTIKKALEMGIPVVTLDTDSPD-----SGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKD 147 (313)
T ss_dssp HHHHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEeCCCCCC-----cceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHH
Confidence 3444455689999997653321 1233445677777788888888776 88999999864 2334556788899
Q ss_pred HHHhCCceeeeeeecCCCCChhHHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHhCCccccceEEEEec
Q 002352 174 ALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTE 244 (932)
Q Consensus 174 ~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~ 244 (932)
++++.|+++..... ...+.++....+.++.+. .+++|+. .+...+..+++++++.|+ ..+...+..|
T Consensus 148 ~l~~~g~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~-p~dv~vvg~d 216 (313)
T 2h3h_A 148 AIKDSEIEIVDILN--DEEDGARAVSLAEAALNAHPDLDAFFG-VYAYNGPAQALVVKNAGK-VGKVKIVCFD 216 (313)
T ss_dssp HHTTSSCEEEEEEE--CSSCHHHHHHHHHHHHHHCTTCCEEEE-CSTTHHHHHHHHHHHTTC-TTTSEEEEEC
T ss_pred HhcCCCCEEEEeec--CCCCHHHHHHHHHHHHHHCcCceEEEE-cCCCccHHHHHHHHHcCC-CCCeEEEEeC
Confidence 99999988764322 123344445556665544 3566554 455677889999999995 2333444443
No 82
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=98.21 E-value=5.2e-05 Score=80.74 Aligned_cols=210 Identities=10% Similarity=-0.019 Sum_probs=132.2
Q ss_pred ccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEE-ccCChh
Q 002352 17 IPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAIL-GPEKSM 94 (932)
Q Consensus 17 ~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aii-Gp~~s~ 94 (932)
++.+||++.|..+ .+......+++.++++. |+++.+ +.++..++....+....++.+ ++++|| .|..+.
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~-------g~~~~~-~~~~~~~~~~~~~~~~~l~~~-~vdgiii~~~~~~ 73 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEF-------NLNASQ-VGPSSTDAPQQVKIIEDLIAR-KVDAITIVPNDAN 73 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHT-------TEEEEE-ECCSSSCHHHHHHHHHHHHHT-TCSEEEECCSCHH
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHc-------CCEEEE-ECCCCCCHHHHHHHHHHHHHc-CCCEEEEecCChH
Confidence 4688999998654 55666778888887764 233332 234667887777777777765 888866 455544
Q ss_pred HHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHH-cCCe-EEEEEEEcC--CcCCChHHH
Q 002352 95 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKA-FGWR-EAVPIYVDN--QYGEEMIPS 170 (932)
Q Consensus 95 ~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~-~~w~-~v~ii~~d~--~~g~~~~~~ 170 (932)
........+...++|+|.+.... .. .+.+..+..++...+..+++++.. .|.+ +++++.... .........
T Consensus 74 ~~~~~~~~~~~~~ipvV~~~~~~--~~---~~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~g 148 (303)
T 3d02_A 74 VLEPVFKKARDAGIVVLTNESPG--QP---SANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADL 148 (303)
T ss_dssp HHHHHHHHHHHTTCEEEEESCTT--CT---TCSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEecCC--CC---CCceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHH
Confidence 44444555666899999986531 11 233455667777778888888866 7887 999887532 223445677
Q ss_pred HHHHHHhCC--ceeeeeeecCCCCChhHHHHHHHHHhcCCc--eEEEEEeChhhHHHHHHHHHhCCccccceEEEEe
Q 002352 171 LTDALQAID--TRVPYRSVISPLATDDQIEKELYKLFTMQT--RVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMT 243 (932)
Q Consensus 171 l~~~l~~~g--~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~--~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t 243 (932)
+.+++++.+ +++... .+....+.++....+.++.+..+ ++|+ +.+...+..+++++++.|+. .+...+..
T Consensus 149 f~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~-~dv~vig~ 222 (303)
T 3d02_A 149 LVKYQKEHYPDMHEVTR-RMPVAESVDDSRRTTLDLMKTYPDLKAVV-SFGSNGPIGAGRAVKEKRAK-NKVAVYGM 222 (303)
T ss_dssp HHHHHHHHCTTEEESSS-CBSCTTCHHHHHHHHHHHHHHCTTEEEEE-ESSTTHHHHHHHHHHHTTCT-TTCEEEEC
T ss_pred HHHHHHhhCCCCEEEEe-ecCCCCCHHHHHHHHHHHHHhCCCCCEEE-EeCCcchhHHHHHHHhcCCC-CCeEEEEe
Confidence 888888754 444322 11212334445556666655444 4443 44556788899999999986 33334443
No 83
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=98.19 E-value=2.9e-05 Score=81.40 Aligned_cols=209 Identities=11% Similarity=0.041 Sum_probs=138.8
Q ss_pred EEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCC-eEEEEccC-ChhH
Q 002352 19 VNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVL-VQAILGPE-KSMQ 95 (932)
Q Consensus 19 i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~-v~aiiGp~-~s~~ 95 (932)
++||++.|... .+......+++.++++. |+++.+...++..++....+....++.+ + +++||-.. .+..
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~vdgii~~~~~~~~ 72 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA-------GVTLLHRSTKDDGDIAGQIQILSYHLSQ-APPDALILAPNSAED 72 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH-------TCEEEECCCSSTTCHHHHHHHHHHHHHH-SCCSEEEECCSSTTT
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc-------CCEEEEECCCCCCCHHHHHHHHHHHHHh-CCCCEEEEeCCCHHH
Confidence 58999998544 55566777888877764 4566665555777888878888888887 6 88888644 3334
Q ss_pred HHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHc----CCeEEEEEEEc--CCcCCChHH
Q 002352 96 TNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAF----GWREAVPIYVD--NQYGEEMIP 169 (932)
Q Consensus 96 a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~----~w~~v~ii~~d--~~~g~~~~~ 169 (932)
.......+...++|+|.+....+. .+.+..+..++...+..+++++... |-++++++..+ ........+
T Consensus 73 ~~~~~~~~~~~~ipvV~~~~~~~~-----~~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~ 147 (276)
T 3ksm_A 73 LTPSVAQYRARNIPVLVVDSDLAG-----DAHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQ 147 (276)
T ss_dssp THHHHHHHHHTTCCEEEESSCCSS-----SCSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEEecCCCC-----CCcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHH
Confidence 455556667789999998653321 1223445677778888899998777 89999999854 233455678
Q ss_pred HHHHHHHhC-CceeeeeeecCCCCChhHHHHHHHHHhcCC--ceEEEEEeChhhHHHHHHHHHhCCccccceEEEEec
Q 002352 170 SLTDALQAI-DTRVPYRSVISPLATDDQIEKELYKLFTMQ--TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTE 244 (932)
Q Consensus 170 ~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~ 244 (932)
.+.+++++. |+.+... .....+.+.....+.++.+.. +++|+ +.+...+..+++++++.|+ ..+...+..|
T Consensus 148 gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~-p~di~vig~d 221 (276)
T 3ksm_A 148 GFLDVLRKHDKIRIIAA--PYAGDDRGAARSEMLRLLKETPTIDGLF-TPNESTTIGALVAIRQSGM-SKQFGFIGFD 221 (276)
T ss_dssp HHHHHHTTCTTEEEEEC--CBCCSSHHHHHHHHHHHHHHCSCCCEEE-CCSHHHHHHHHHHHHHTTC-TTSSEEEEES
T ss_pred HHHHHHHhCCCcEEEEE--ecCCCcHHHHHHHHHHHHHhCCCceEEE-ECCchhhhHHHHHHHHcCC-CCCeEEEEeC
Confidence 889999888 8776532 222234444555556655443 44443 3455667889999999997 3334444443
No 84
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=98.18 E-value=7.1e-05 Score=79.68 Aligned_cols=206 Identities=10% Similarity=0.079 Sum_probs=133.6
Q ss_pred CCCccEEEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCCh
Q 002352 14 NTTIPVNVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKS 93 (932)
Q Consensus 14 ~~~~~i~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s 93 (932)
...+++|||++--.+-..-...+.|++- .+++.|...|.++++.+.|.++|+..+...+.+|+.+ ++++|++ ..+
T Consensus 4 ~~~~~~~igi~q~~~hp~ld~~~~G~~~---~L~~~G~~~g~nv~~~~~~a~gd~~~~~~~~~~l~~~-~~DlIia-i~t 78 (302)
T 3lkv_A 4 IMAKTAKVAVSQIVEHPALDATRQGLLD---GLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGE-NPDVLVG-IAT 78 (302)
T ss_dssp ---CCEEEEEEESCCCHHHHHHHHHHHH---HHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHTT-CCSEEEE-ESH
T ss_pred hhcCCceEEEEEeecChhHHHHHHHHHH---HHHhhCcccCCcEEEEEEeCCCCHHHHHHHHHHHHhc-CCcEEEE-cCC
Confidence 4567899998865444332345556654 4555666668899999999999999999999999986 9999987 344
Q ss_pred hHHHHHHHhcCCCCccEEecccCCCCcc----C--CCCCceEecccCchhHHHHHHHHHHH-c-CCeEEEEEEEcCCcC-
Q 002352 94 MQTNFIIQLGNKSQVPILSFSATSPSLT----S--IRSSYFFRGSLNDSSQVGAITAIIKA-F-GWREAVPIYVDNQYG- 164 (932)
Q Consensus 94 ~~a~~v~~~~~~~~iP~Is~~a~~~~l~----~--~~~p~~~r~~ps~~~~~~ai~~~l~~-~-~w~~v~ii~~d~~~g- 164 (932)
..+.+++... .++|+|..+.++|... + ...+++.-+. +........++++. + +-+++++||...+.+
T Consensus 79 ~aa~a~~~~~--~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~--~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s 154 (302)
T 3lkv_A 79 PTAQALVSAT--KTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANA 154 (302)
T ss_dssp HHHHHHHHHC--SSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHH
T ss_pred HHHHHHHhhc--CCCCeEEEecCCcchhhhcccccCCCCcEEEEE--CCcCHHHHHHHHHHhCCCCCEEEEEeCCCcccH
Confidence 4555555543 4799988777766432 1 1234554443 22223445566655 3 679999999765433
Q ss_pred CChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhH---HHHHHHHHhCCc
Q 002352 165 EEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLG---SRIFEKANEIGL 233 (932)
Q Consensus 165 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~---~~l~~~a~~~g~ 233 (932)
....+.+++.+++.|+++..... ....++...+..+. .+.+++++..+.... ..+...+.+.+.
T Consensus 155 ~~~~~~~~~~~~~~g~~~v~~~~----~~~~~~~~~~~~l~-~~~d~i~~~~d~~~~~~~~~i~~~~~~~~i 221 (302)
T 3lkv_A 155 VSLMELLKLSAAKHGIKLVEATA----LKSADVQSATQAIA-EKSDVIYALIDNTVASAIEGMIVAANQAKT 221 (302)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEC----SSGGGHHHHHHHHH-TTCSEEEECSCHHHHHTHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCEEEEEec----CChHHHHHHHHhcc-CCeeEEEEeCCcchhhHHHHHHHHHhhcCC
Confidence 44567788888899998875533 23456666676665 568888877655432 444455565554
No 85
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=98.17 E-value=4.2e-05 Score=80.92 Aligned_cols=209 Identities=10% Similarity=-0.008 Sum_probs=137.3
Q ss_pred CccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEE-ccCCh
Q 002352 16 TIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAIL-GPEKS 93 (932)
Q Consensus 16 ~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aii-Gp~~s 93 (932)
.++.+||+++|..+ .+......+++.++++. |+ ++.+.++..++..-.+....++.+ ++++|| .|..+
T Consensus 3 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-------g~--~~~~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~~~~ 72 (291)
T 3l49_A 3 LEGKTIGITAIGTDHDWDLKAYQAQIAEIERL-------GG--TAIALDAGRNDQTQVSQIQTLIAQ-KPDAIIEQLGNL 72 (291)
T ss_dssp CTTCEEEEEESCCSSHHHHHHHHHHHHHHHHT-------TC--EEEEEECTTCHHHHHHHHHHHHHH-CCSEEEEESSCH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHHHc-------CC--EEEEEcCCCCHHHHHHHHHHHHHc-CCCEEEEeCCCh
Confidence 34578999999654 44445667777776654 23 445556777887767777777766 888887 45555
Q ss_pred hHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHH--cCCeEEEEEEEcCC--cCCChHH
Q 002352 94 MQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKA--FGWREAVPIYVDNQ--YGEEMIP 169 (932)
Q Consensus 94 ~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~--~~w~~v~ii~~d~~--~g~~~~~ 169 (932)
.........+...++|+|.+....+ +.+..+..++...+..+++++.. .|-++++++..... ......+
T Consensus 73 ~~~~~~~~~~~~~~iPvV~~~~~~~-------~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~ 145 (291)
T 3l49_A 73 DVLNPWLQKINDAGIPLFTVDTATP-------HAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYD 145 (291)
T ss_dssp HHHHHHHHHHHHTTCCEEEESCCCT-------TCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHH
T ss_pred hhhHHHHHHHHHCCCcEEEecCCCC-------CcCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHH
Confidence 5566666677778999999865332 12345566777778888888877 89999999975422 2234467
Q ss_pred HHHHHHHhC-CceeeeeeecCCCC-ChhHHHHHHHHHhcC-----CceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 170 SLTDALQAI-DTRVPYRSVISPLA-TDDQIEKELYKLFTM-----QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 170 ~l~~~l~~~-g~~v~~~~~~~~~~-~~~~~~~~l~~l~~~-----~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
.+.+++++. |+++.....+.... +.+.....+.++.+. ++++| ++.+...+..+++++++.|+. +...+.
T Consensus 146 gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~--di~vvg 222 (291)
T 3l49_A 146 QMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAI-WACWDVPMIGATQALQAAGRT--DIRTYG 222 (291)
T ss_dssp HHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEE-EESSHHHHHHHHHHHHHTTCC--SCEEEE
T ss_pred HHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCCcCEE-EECCCchHHHHHHHHHHcCCC--CeEEEE
Confidence 888999988 67754433322222 223334455555443 45666 456667788999999999986 444444
Q ss_pred ec
Q 002352 243 TE 244 (932)
Q Consensus 243 t~ 244 (932)
.|
T Consensus 223 ~d 224 (291)
T 3l49_A 223 VD 224 (291)
T ss_dssp EE
T ss_pred ec
Confidence 43
No 86
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=98.14 E-value=2.8e-05 Score=82.73 Aligned_cols=204 Identities=9% Similarity=0.008 Sum_probs=138.1
Q ss_pred cEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCC--CCHHHHHHHHHHHHhcCCeEEEE-ccCCh
Q 002352 18 PVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSK--GDVVAAAAAALDLLNNVLVQAIL-GPEKS 93 (932)
Q Consensus 18 ~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~--~~~~~a~~~a~~li~~~~v~aii-Gp~~s 93 (932)
.++||++.|... .+......+++.++++. |+++. +.++. .++..-.+....++.+ ++++|| .|...
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~--~~~~~~~~~~~~~~~~i~~l~~~-~vdgiii~~~~~ 72 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEEL-------KVDLQ--ILAPPGANDVPKQVQFIESALAT-YPSGIATTIPSD 72 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHH-------TCEEE--EECCSSSCCHHHHHHHHHHHHHT-CCSEEEECCCCS
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHh-------CcEEE--EECCCCcCCHHHHHHHHHHHHHc-CCCEEEEeCCCH
Confidence 478999998864 55566778888888774 34444 44544 6887777777777776 888777 45555
Q ss_pred hHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcC--CeEEEEEEEcC--CcCCChHH
Q 002352 94 MQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFG--WREAVPIYVDN--QYGEEMIP 169 (932)
Q Consensus 94 ~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~--w~~v~ii~~d~--~~g~~~~~ 169 (932)
.........+...++|+|.+....+.. ...+.+..+..++...+..+++++...| -++++++..+. .......+
T Consensus 73 ~~~~~~~~~~~~~giPvV~~~~~~~~~--~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~ 150 (297)
T 3rot_A 73 TAFSKSLQRANKLNIPVIAVDTRPKDK--TKNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAY 150 (297)
T ss_dssp STTHHHHHHHHHHTCCEEEESCCCSCT--TTSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccc--cccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHH
Confidence 544555666677899999987544321 1123455666778888888999987777 89999997543 23345578
Q ss_pred HHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHhCCccccc
Q 002352 170 SLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKG 237 (932)
Q Consensus 170 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~l~~~a~~~g~~~~~ 237 (932)
.+.+++++.|+++.... .....+.....+.++.+. ++++| ++.+...+..+++++++.|+..|+
T Consensus 151 Gf~~~l~~~g~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~A~g~~~al~~~g~~vP~ 216 (297)
T 3rot_A 151 GIKTILQDKGIFFEELD---VGTDPNQVQSRVKSYFKIHPETNII-FCLTSQALDPLGQMLLHPDRYDFN 216 (297)
T ss_dssp HHHHHHHHTTCEEEEEE---CCSCHHHHHHHHHHHHHHCTTCCEE-EESSHHHHHHHHHHHHSHHHHTCC
T ss_pred HHHHHHHhcCCeEEEee---cCCChHHHHHHHHHHHHhCCCCCEE-EEcCCcchHHHHHHHHhcCCccCC
Confidence 89999999998886543 122344445555554433 34544 345666778899999999986443
No 87
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=98.14 E-value=6.7e-05 Score=81.16 Aligned_cols=205 Identities=10% Similarity=-0.045 Sum_probs=132.8
Q ss_pred ccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCC--eEEEEccCC-
Q 002352 17 IPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVL--VQAILGPEK- 92 (932)
Q Consensus 17 ~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~--v~aiiGp~~- 92 (932)
.+.+||++.|..+ .+-.....+++.++++. |+++ .+.++..++....+....++.+ + +++||....
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~l--~~~~~~~~~~~~~~~i~~l~~~-~~~vdgiIi~~~~ 73 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSV-------GLPY--VPLTTEGSSEKGIADIRALLQK-TGGNLVLNVDPND 73 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHH-------TCCE--EEEECTTCHHHHHHHHHHHHHH-TTTCEEEEECCSS
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHHc-------CCEE--EEecCCCCHHHHHHHHHHHHHC-CCCCCEEEEeCCC
Confidence 4568999998543 44455667777777654 2334 4456667777766777777776 7 999886433
Q ss_pred hhHHHHHHHhcCCCCccEEecccCCCCccCCC-C-CceEecccCchhHHHHHHHHHHH--cCCeEEEEEEEcC--CcCCC
Q 002352 93 SMQTNFIIQLGNKSQVPILSFSATSPSLTSIR-S-SYFFRGSLNDSSQVGAITAIIKA--FGWREAVPIYVDN--QYGEE 166 (932)
Q Consensus 93 s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~-~-p~~~r~~ps~~~~~~ai~~~l~~--~~w~~v~ii~~d~--~~g~~ 166 (932)
..........+...++|+|.+....+...... . +.+..+..++...+..+++++.. .|.+++++|.... .....
T Consensus 74 ~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~ 153 (332)
T 2rjo_A 74 SADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIE 153 (332)
T ss_dssp HHHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHH
Confidence 33232344445557899999865433211111 1 35666777888888888898876 6999999998642 23455
Q ss_pred hHHHHHHHHHhC-CceeeeeeecCCCCChhHHHHHHHHHhcC---CceEEEEEeChhhHHHHHHHHHhCCcc
Q 002352 167 MIPSLTDALQAI-DTRVPYRSVISPLATDDQIEKELYKLFTM---QTRVFILHMLPSLGSRIFEKANEIGLM 234 (932)
Q Consensus 167 ~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~l~~l~~~---~~~viil~~~~~~~~~l~~~a~~~g~~ 234 (932)
..+.|.+++++. |+.+..... ...+.++....+.++.+. ++++|+ +.+...+..+++++++.|+.
T Consensus 154 R~~Gf~~al~~~pgi~~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~~aI~-~~nd~~A~g~~~al~~~G~~ 222 (332)
T 2rjo_A 154 RKAGLDAALKKFPGIQLLDFQV--ADWNSQKAFPIMQAWMTRFNSKIKGVW-AANDDMALGAIEALRAEGLA 222 (332)
T ss_dssp HHHHHHHHHHTCTTEEEEEEEE--CTTCHHHHHHHHHHHHHHHGGGEEEEE-ESSHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHhCCCcEEEeecc--CCCCHHHHHHHHHHHHHhcCCCeeEEE-ECCCchHHHHHHHHHHcCCC
Confidence 677899999998 887754322 222344444555555544 355544 45566788899999999986
No 88
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=98.13 E-value=5.7e-05 Score=79.91 Aligned_cols=210 Identities=12% Similarity=0.072 Sum_probs=131.1
Q ss_pred CCccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCCh
Q 002352 15 TTIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKS 93 (932)
Q Consensus 15 ~~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s 93 (932)
...+.+||+++|... .+-.....+++.++++. |+++. +.++..++....+....++.+ +|++||-....
T Consensus 13 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~~~ 82 (289)
T 2fep_A 13 SKKTTTVGVIIPDISSIFYSELARGIEDIATMY-------KYNII--LSNSDQNMEKELHLLNTMLGK-QVDGIVFMGGN 82 (289)
T ss_dssp ---CCEEEEEESCTTSHHHHHHHHHHHHHHHHT-------TCEEE--EEECTTCHHHHHHHHHHHHHT-TCSEEEECCSC
T ss_pred cCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHc-------CCEEE--EEeCCCCHHHHHHHHHHHHhC-CCCEEEEecCC
Confidence 345678999998643 44455666777666642 34544 456666776666666666655 89888753322
Q ss_pred hHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcC---CcCCChHHH
Q 002352 94 MQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDN---QYGEEMIPS 170 (932)
Q Consensus 94 ~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~---~~g~~~~~~ 170 (932)
.....+.. +...++|+|.+....+ . +.+..+..++...+..+++++...|.+++++|.... .......+.
T Consensus 83 ~~~~~~~~-l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~G 155 (289)
T 2fep_A 83 ITDEHVAE-FKRSPVPIVLAASVEE---Q---EETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQG 155 (289)
T ss_dssp CCHHHHHH-HHHSSSCEEEESCCCT---T---CCSCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHH
T ss_pred CCHHHHHH-HHhcCCCEEEEccccC---C---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCccccccHHHHHHH
Confidence 12222333 3457999999865322 1 223345567777788888998888999999998653 234566788
Q ss_pred HHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 171 LTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 171 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
+.+++++.|+.+.....+....+.++-...+.++.+. .+++|+ +.+...+..+++++++.|+..|+-+-++
T Consensus 156 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~di~vv 228 (289)
T 2fep_A 156 YKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAIL-SATDEMALGIIHAAQDQGLSIPEDLDII 228 (289)
T ss_dssp HHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHcCCCCChheEeeCCCCHHHHHHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 9999999987654321221122334444556666554 456555 4556678899999999998655443333
No 89
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=98.12 E-value=9e-05 Score=78.25 Aligned_cols=211 Identities=8% Similarity=-0.003 Sum_probs=133.6
Q ss_pred ccEEEEEEEeCC---CccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCCh
Q 002352 17 IPVNVGLVLDMN---GEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKS 93 (932)
Q Consensus 17 ~~i~IG~i~~~s---~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s 93 (932)
.+.+||++.|.. ..+......+++.++++. |+++.+...|+..++....+....++.+ ++++||.....
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~~~~~~~~~~~~~~~~~~~~l~~~-~vdgii~~~~~ 75 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY-------EIKLEFMAPEKEEDYLVQNELIEEAIKR-KPDVILLAAAD 75 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH-------TCEEEECCCSSTTCHHHHHHHHHHHHHT-CCSEEEECCSC
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc-------CCEEEEecCCCCCCHHHHHHHHHHHHHh-CCCEEEEeCCC
Confidence 456799999854 344556677777777765 3555554444467777777777777765 89988864333
Q ss_pred -hHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHc-C-CeEEEEEEEcC--CcCCChH
Q 002352 94 -MQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAF-G-WREAVPIYVDN--QYGEEMI 168 (932)
Q Consensus 94 -~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~-~-w~~v~ii~~d~--~~g~~~~ 168 (932)
.........+...++|+|.+....+. .+.+..+..++...+..+++++... | -+++++|.... .......
T Consensus 76 ~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~ 150 (289)
T 3brs_A 76 YEKTYDAAKEIKDAGIKLIVIDSGMKQ-----DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDRE 150 (289)
T ss_dssp TTTTHHHHTTTGGGTCEEEEESSCCSS-----CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHH
T ss_pred hHHhHHHHHHHHHCCCcEEEECCCCCC-----CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHH
Confidence 32224445556689999997653221 1234566777778888888888664 6 89999998642 2334557
Q ss_pred HHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCC--ceEEEEEeChhhHHHHHHHHHhCCccccceEEEEec
Q 002352 169 PSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ--TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTE 244 (932)
Q Consensus 169 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~ 244 (932)
+.+.+++++.|..+... +....+.++....+.++.+.. +++|+ +.+...+..+++++++.|+. .+...+..|
T Consensus 151 ~gf~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~-~di~vvg~d 224 (289)
T 3brs_A 151 EGLKIGLSDDSNKIEAI--YYCDSNYDKAYDGTVELLTKYPDISVMV-GLNQYSATGAARAIKDMSLE-AKVKLVCID 224 (289)
T ss_dssp HHHHHHHGGGGGGEEEE--EECTTCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEEEE
T ss_pred HHHHHHHHhCCCcEEee--ecCCCCHHHHHHHHHHHHHhCCCceEEE-ECCCcchHHHHHHHHhcCCC-CCEEEEEEC
Confidence 78889999888664332 112233444445555555433 45544 45566788899999999986 334444443
No 90
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=98.11 E-value=1.5e-05 Score=83.61 Aligned_cols=204 Identities=11% Similarity=0.025 Sum_probs=119.2
Q ss_pred EEEEEEeCC-CccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChhHHHH
Q 002352 20 NVGLVLDMN-GEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSMQTNF 98 (932)
Q Consensus 20 ~IG~i~~~s-~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~~a~~ 98 (932)
+||+++|.. +.+-.....+++-++++. |+++ .+.++..++....+....++.+ ++++||........ .
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~-------g~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~~~~-~ 69 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLEQ-------RYDL--ALFPILSLARLKRYLENTTLAY-LTDGLILASYDLTE-R 69 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGGG-------TCEE--EECCCCSCCCCC---------C-CCSEEEEESCCCC---
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHC-------CCEE--EEEeCCCchhhHHHHHHHHHhC-CCCEEEEecCCCCH-H
Confidence 489999853 344445556666555443 3444 4455554543334444555544 88888763332222 3
Q ss_pred HHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcC-C-----cCC-ChHHHH
Q 002352 99 IIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDN-Q-----YGE-EMIPSL 171 (932)
Q Consensus 99 v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~-~-----~g~-~~~~~l 171 (932)
....+...++|+|......+ + +..+..++...+..+++++...|-+++++|.... . ... ...+.+
T Consensus 70 ~~~~~~~~~iPvV~~~~~~~-------~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf 141 (276)
T 2h0a_A 70 FEEGRLPTERPVVLVDAQNP-------R-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGF 141 (276)
T ss_dssp ----CCSCSSCEEEESSCCT-------T-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEeccCC-------C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHH
Confidence 34455678999999764321 1 4456677777888888998888999999998654 3 334 557789
Q ss_pred HHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCC--ceEEEEEeChhhHHHHHHHHHhCCccccceEEEEe
Q 002352 172 TDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ--TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMT 243 (932)
Q Consensus 172 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t 243 (932)
.+++++.|+.+.....+....+..+-...+.++.+.. +++|+ +++...+..+++++++.|+..|+-+.+++
T Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg 214 (276)
T 2h0a_A 142 QEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNVF-AGADQVALGVLEEAVRLGLTPGRDVRVLG 214 (276)
T ss_dssp HHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEEE-CSSHHHHHHHHHHHHTTSCTTTTSEEEEE
T ss_pred HHHHHHcCCCCChHHeeecCCChHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCCeEEEE
Confidence 9999999876542211111223334445566665443 66665 55666788999999999987665554543
No 91
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=98.10 E-value=0.00013 Score=79.62 Aligned_cols=215 Identities=10% Similarity=-0.015 Sum_probs=139.6
Q ss_pred cEEEEEEEeCCC--ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhc-CCeEEEEccCChh
Q 002352 18 PVNVGLVLDMNG--EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNN-VLVQAILGPEKSM 94 (932)
Q Consensus 18 ~i~IG~i~~~s~--~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~~v~aiiGp~~s~ 94 (932)
..+||++.|... .+-.....+++-++++. |+++ .+.++..++..-.+...+++.+ .++++||-.....
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~-------g~~~--~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~ 73 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDL-------GLDL--RILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQY 73 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHH-------TCEE--EEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSS
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHc-------CCeE--EEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchh
Confidence 468999999754 45556777888777765 2444 4457777888878888888885 5888877543444
Q ss_pred HHHHHHHhcCCCCccEEecccCCCCccC-------CCCC-ceEecccCchhHHHHHHHHHHHcC------C-eEEEEEEE
Q 002352 95 QTNFIIQLGNKSQVPILSFSATSPSLTS-------IRSS-YFFRGSLNDSSQVGAITAIIKAFG------W-REAVPIYV 159 (932)
Q Consensus 95 ~a~~v~~~~~~~~iP~Is~~a~~~~l~~-------~~~p-~~~r~~ps~~~~~~ai~~~l~~~~------w-~~v~ii~~ 159 (932)
....+...+...++|+|.+....+.... ..++ ++..+..++...+..+++++...+ - +++++|..
T Consensus 74 ~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g 153 (350)
T 3h75_A 74 VAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSG 153 (350)
T ss_dssp HHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEES
T ss_pred hHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeC
Confidence 5566677788899999998765433211 1111 356677778888888888886655 4 79999875
Q ss_pred cCC--cCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEE-EEEeChhhHHHHHHHHHhCCcccc
Q 002352 160 DNQ--YGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVF-ILHMLPSLGSRIFEKANEIGLMNK 236 (932)
Q Consensus 160 d~~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~vi-il~~~~~~~~~l~~~a~~~g~~~~ 236 (932)
... ......+.+.+++++.|. +.....+....+.+.....+.++.+..+++- |++++...+..+++++++.|+..+
T Consensus 154 ~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al~~~G~~vP 232 (350)
T 3h75_A 154 LKVTPAAQLRERGLRRALAEHPQ-VHLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELGRKPG 232 (350)
T ss_dssp CTTSHHHHHHHHHHHHHHHHCTT-EEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCCBT
T ss_pred CCCCHHHHHHHHHHHHHHHHCCC-eEEEEEeeCCCcHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHHHHHHcCCCCC
Confidence 422 334457789999999886 2222222223344444455565554444433 344566678899999999998755
Q ss_pred ceEEEE
Q 002352 237 GCVWIM 242 (932)
Q Consensus 237 ~~~wi~ 242 (932)
+-+-|+
T Consensus 233 ~di~vv 238 (350)
T 3h75_A 233 TDLLFS 238 (350)
T ss_dssp TTBEEE
T ss_pred CCeEEE
Confidence 444343
No 92
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=98.10 E-value=6.9e-05 Score=80.41 Aligned_cols=206 Identities=5% Similarity=-0.029 Sum_probs=128.9
Q ss_pred EEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEe-cCCCCHHHHHHHHHHHHhcCCeEEEE-ccCChhHH
Q 002352 20 NVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTR-NSKGDVVAAAAAALDLLNNVLVQAIL-GPEKSMQT 96 (932)
Q Consensus 20 ~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~-D~~~~~~~a~~~a~~li~~~~v~aii-Gp~~s~~a 96 (932)
+||+++|..+ .+......+++.++++.+ +++.+. ++..++..-.+....++.+ +|++|| .|..+...
T Consensus 5 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g---------~~~~~~~~~~~d~~~q~~~i~~li~~-~vdgiii~~~~~~~~ 74 (316)
T 1tjy_A 5 RIAFIPKLVGVGFFTSGGNGAQEAGKALG---------IDVTYDGPTEPSVSGQVQLVNNFVNQ-GYDAIIVSAVSPDGL 74 (316)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHHHT---------CEEEECCCSSCCHHHHHHHHHHHHHT-TCSEEEECCSSSSTT
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHhC---------CEEEEECCCCCCHHHHHHHHHHHHHc-CCCEEEEeCCCHHHH
Confidence 6999998655 445566777887777653 344455 4677888878888888876 888855 56555544
Q ss_pred HHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHH---cCCeEEEEEEEc--CCcCCChHHHH
Q 002352 97 NFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKA---FGWREAVPIYVD--NQYGEEMIPSL 171 (932)
Q Consensus 97 ~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~---~~w~~v~ii~~d--~~~g~~~~~~l 171 (932)
..+...+...++|+|.+....+ .. ....+....++...+..+++++.. .|-+++++|... +.......+.+
T Consensus 75 ~~~~~~a~~~gipvV~~d~~~~---~~-~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~ 150 (316)
T 1tjy_A 75 CPALKRAMQRGVKILTWDSDTK---PE-CRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEA 150 (316)
T ss_dssp HHHHHHHHHTTCEEEEESSCCC---GG-GCSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCcCEEEEecCCCC---CC-CceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHH
Confidence 5555666678999999864321 11 112233255666677888888755 578999999853 22334556778
Q ss_pred HHHHHhC--CceeeeeeecCCCCChhHHHHHHHHHhcCC--ceEEEEEeChhhHHHHHHHHHhCCccccceEEEEec
Q 002352 172 TDALQAI--DTRVPYRSVISPLATDDQIEKELYKLFTMQ--TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTE 244 (932)
Q Consensus 172 ~~~l~~~--g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~ 244 (932)
.+++++. ++++..... ...+.+.....+.++.+.. +++|+ +.+...+..+++++++.| . .....+..|
T Consensus 151 ~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~aI~-~~nD~~A~g~~~al~~~G-~-~dv~VvG~D 222 (316)
T 1tjy_A 151 KAKISQEHPGWEIVTTQF--GYNDATKSLQTAEGIIKAYPDLDAII-APDANALPAAAQAAENLK-R-NNLAIVGFS 222 (316)
T ss_dssp HHHHHHHCTTEEEEEEEE--CTTCHHHHHHHHHHHHHHCSSCCEEE-ECSTTHHHHHHHHHHHTT-C-CSCEEEEBC
T ss_pred HHHHHhhCCCcEEEEecc--CCCCHHHHHHHHHHHHHhCCCCCEEE-ECCCccHHHHHHHHHHcC-C-CCEEEEEeC
Confidence 8888765 555543222 1233444445555555433 45444 445667888999999999 5 333344433
No 93
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=98.07 E-value=0.00011 Score=77.41 Aligned_cols=205 Identities=13% Similarity=0.092 Sum_probs=127.8
Q ss_pred CccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChh
Q 002352 16 TIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSM 94 (932)
Q Consensus 16 ~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~ 94 (932)
..+.+||++.|..+ .+......+++.++++. |+++. +.+...++....+....++.+ +|++||......
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~~ 75 (285)
T 3c3k_A 6 AKTGMLLVMVSNIANPFCAAVVKGIEKTAEKN-------GYRIL--LCNTESDLARSRSCLTLLSGK-MVDGVITMDALS 75 (285)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT-------TCEEE--EEECTTCHHHHHHHTHHHHTT-CCSEEEECCCGG
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHHHHHc-------CCEEE--EEeCCCCHHHHHHHHHHHHhC-CCCEEEEeCCCC
Confidence 44578999998543 45555667777666652 35554 445666776655556666654 899888743332
Q ss_pred HHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCC--cCCChHHHHH
Q 002352 95 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLT 172 (932)
Q Consensus 95 ~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~ 172 (932)
....+..+ . .++|+|.+....+ + +.+..+..++...+..+++++...|-+++++|..... ........+.
T Consensus 76 ~~~~~~~l-~-~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~ 147 (285)
T 3c3k_A 76 ELPELQNI-I-GAFPWVQCAEYDP---L---STVSSVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYL 147 (285)
T ss_dssp GHHHHHHH-H-TTSSEEEESSCCT---T---SSSCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHH
T ss_pred ChHHHHHH-h-cCCCEEEEccccC---C---CCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHH
Confidence 22333333 4 8999999865322 1 2233455667777788888887789999999986532 3345567788
Q ss_pred HHHHhCCceeeeeeecCCCCChhHHHHHHHH--HhcC--CceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 173 DALQAIDTRVPYRSVISPLATDDQIEKELYK--LFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 173 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~--l~~~--~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
+++++.|+.+. ...- ..+.++....+.+ +.+. ++++|+ +.+...+..+++++++.|+..|+-+-++
T Consensus 148 ~~l~~~g~~~~-~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vv 217 (285)
T 3c3k_A 148 NRLKFHGLDYS-RISY--AENLDYMAGKLATFSLLKSAVKPDAIF-AISDVLAAGAIQALTESGLSIPQDVAVV 217 (285)
T ss_dssp HHHHHHTCCCC-EEEE--CSSSSHHHHHHHHHHHHSSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHcCCCce-Eeec--CCChHHHHHHHHHHHHHcCCCCCeEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 99999887654 1111 1122233445555 5444 466655 4556678889999999998765544444
No 94
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=98.06 E-value=7.2e-05 Score=81.15 Aligned_cols=210 Identities=13% Similarity=0.027 Sum_probs=136.0
Q ss_pred CccEEEEEEEeC---CCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCC
Q 002352 16 TIPVNVGLVLDM---NGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEK 92 (932)
Q Consensus 16 ~~~i~IG~i~~~---s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~ 92 (932)
...-+||+++|. ++.+-.....+++.++++. |+. +.+.++..++..-.+....++.+ +|++||-...
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~-------g~~--~~~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~~ 128 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK-------GRQ--LLLADGKHSAEEERQAIQYLLDL-RCDAIMIYPR 128 (338)
T ss_dssp -CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT-------TCE--EEEEECTTSHHHHHHHHHHHHHT-TCSEEEECCS
T ss_pred CCCCEEEEEecCCcccChhHHHHHHHHHHHHHHC-------CCE--EEEEeCCCChHHHHHHHHHHHhC-CCCEEEEeCC
Confidence 445789999996 3355455666666666653 344 44556667777666666666665 8988886433
Q ss_pred hhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcC--CcCCChHHH
Q 002352 93 SMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDN--QYGEEMIPS 170 (932)
Q Consensus 93 s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~ 170 (932)
......+...+...++|+|......+. +.+..+..++..-+..+++++...|.+++++|.... .......+.
T Consensus 129 ~~~~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 202 (338)
T 3dbi_A 129 FLSVDEIDDIIDAHSQPIMVLNRRLRK------NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAG 202 (338)
T ss_dssp SSCHHHHHHHHHHCSSCEEEESSCCSS------SGGGEECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHH
T ss_pred CCChHHHHHHHHcCCCCEEEEcCCCCC------CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHH
Confidence 333455667777889999987653322 122335667777788888888888999999997642 233455788
Q ss_pred HHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 171 LTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 171 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
+.+++++.|+.+.....+....+.++-...+.++.+. ++++|+ +.+...+..+++++++.|+..|+-+-|+
T Consensus 203 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~vv 275 (338)
T 3dbi_A 203 YKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALV-ASNDDMAIGAMKALHERGVAVPEQVSVI 275 (338)
T ss_dssp HHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 9999999998764332222223344444555555433 455554 4556678899999999999765544444
No 95
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=98.05 E-value=9.4e-05 Score=78.95 Aligned_cols=210 Identities=9% Similarity=0.004 Sum_probs=128.6
Q ss_pred cEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChh-H
Q 002352 18 PVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSM-Q 95 (932)
Q Consensus 18 ~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~-~ 95 (932)
+++||++.|..+ .+......+++.++++. |+++ .+.++..++....+....++.+ +|++||...... .
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-------g~~l--~~~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~~~~ 71 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKR-------GITL--KIADGQQKQENQIKAVRSFVAQ-GVDAIFIAPVVATG 71 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHH-------TCEE--EEEECTTCHHHHHHHHHHHHHH-TCSEEEECCSSSSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc-------CCEE--EEeCCCCCHHHHHHHHHHHHHc-CCCEEEEeCCChhh
Confidence 478999999755 44555667777776654 2444 4456667777666666677765 898887643332 2
Q ss_pred HHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcC---CeEEEEEEEcCC--cCCChHHH
Q 002352 96 TNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFG---WREAVPIYVDNQ--YGEEMIPS 170 (932)
Q Consensus 96 a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~---w~~v~ii~~d~~--~g~~~~~~ 170 (932)
.......+...++|+|.+....+.. ...+++..+..++...+..+++++...| -+++++|..... ......+.
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~G 149 (306)
T 2vk2_A 72 WEPVLKEAKDAEIPVFLLDRSIDVK--DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKG 149 (306)
T ss_dssp CHHHHHHHHHTTCCEEEESSCCCCS--CGGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEecCCCCCC--CccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHH
Confidence 1233344456789999876532211 1011344566677777788888886655 789999986422 23445678
Q ss_pred HHHHHHhCCc-eeeeeeecCCCCChhHHHHHHHHHhc-----CCceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 171 LTDALQAIDT-RVPYRSVISPLATDDQIEKELYKLFT-----MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 171 l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~l~~l~~-----~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
+.+++++.|. .+... +....+.++-...+.++.+ ..+++|+ +.+...+..+++++++.|+..|+-+-|+
T Consensus 150 f~~al~~~g~~~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~vi 224 (306)
T 2vk2_A 150 FAEAIKNAPNIKIIRS--QSGDFTRSKGKEVMESFIKAENNGKNICMVY-AHNDDMVIGAIQAIKEAGLKPGKDILTG 224 (306)
T ss_dssp HHHHTTTCTTEEEEEE--EECTTCHHHHHHHHHHHHHHTTTTTTCCEEE-ESSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHhhCCCeEEEEe--ccCCCcHHHHHHHHHHHHHhCCCCCCeeEEE-ECCchHHHHHHHHHHHcCCCCCCCeEEE
Confidence 8899988885 33221 1112233333344455443 3466654 4556678889999999998655433333
No 96
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=98.05 E-value=0.00015 Score=77.29 Aligned_cols=204 Identities=11% Similarity=0.038 Sum_probs=129.2
Q ss_pred EEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccC-ChhHH
Q 002352 19 VNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPE-KSMQT 96 (932)
Q Consensus 19 i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~-~s~~a 96 (932)
-+||++.|..+ .+......+++.++++. |+ +++.+.++..++....+....++.+ ++++||-.. .....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~-~~~~~~~~~~~~~~~~~~~~~~~~~-~vdgiii~~~~~~~~ 73 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAA-------PD-VQLLMNDSQNDQSKQNDQIDVLLAK-GVKALAINLVDPAAA 73 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTC-------TT-EEEEEEECTTCHHHHHHHHHHHHHT-TCSEEEECCSSGGGH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhc-------CC-eEEEEecCCCCHHHHHHHHHHHHHc-CCCEEEEeCCCcchh
Confidence 57999998543 44445566666665543 23 3455667777877766666677765 898887643 33323
Q ss_pred HHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHH------------cCCeEEEEEEEcC--C
Q 002352 97 NFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKA------------FGWREAVPIYVDN--Q 162 (932)
Q Consensus 97 ~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~------------~~w~~v~ii~~d~--~ 162 (932)
......+...++|+|.+....+......++.+..+..++...+..+++++.. .|-+++++|.... .
T Consensus 74 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~ 153 (309)
T 2fvy_A 74 GTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 153 (309)
T ss_dssp HHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCH
T ss_pred HHHHHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCc
Confidence 3444555668999999865322110011345666777888888888888866 6788999998642 2
Q ss_pred cCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcC----CceEEEEEeChhhHHHHHHHHHhCC
Q 002352 163 YGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM----QTRVFILHMLPSLGSRIFEKANEIG 232 (932)
Q Consensus 163 ~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~----~~~viil~~~~~~~~~l~~~a~~~g 232 (932)
......+.+.+++++.|+.+.....+....+...-...+.++.+. .+++|+ +++...+..+++++++.|
T Consensus 154 ~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g 226 (309)
T 2fvy_A 154 DAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVI-ANNDAMAMGAVEALKAHN 226 (309)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEE-ESSHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEEecCCCCHHHHHHHHHHHHHhCCCCCccEEE-ECCchhHHHHHHHHHHcC
Confidence 334557788999999987654332222223334444556665544 456655 455667888999999988
No 97
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=98.04 E-value=5.6e-05 Score=80.55 Aligned_cols=206 Identities=4% Similarity=-0.160 Sum_probs=132.2
Q ss_pred CccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEE-ccCCh
Q 002352 16 TIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAIL-GPEKS 93 (932)
Q Consensus 16 ~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aii-Gp~~s 93 (932)
.++.+||+++|... .+-.....+++-++++. |+++.+...+...++....+....++.+ ++++|| .|...
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vdgiii~~~~~ 74 (304)
T 3o1i_D 3 GSDEKICAIYPHLKDSYWLSVNYGMVSEAEKQ-------GVNLRVLEAGGYPNKSRQEQQLALCTQW-GANAIILGTVDP 74 (304)
T ss_dssp --CCEEEEEESCSCSHHHHHHHHHHHHHHHHH-------TCEEEEEECSSTTCHHHHHHHHHHHHHH-TCSEEEECCSST
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHHc-------CCeEEEEcCCCCCCHHHHHHHHHHHHHc-CCCEEEEeCCCh
Confidence 45678999998654 44455667777777665 3444443333333887777777777776 888877 44444
Q ss_pred hHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcC-----CeEEEEEEEcC--CcCCC
Q 002352 94 MQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFG-----WREAVPIYVDN--QYGEE 166 (932)
Q Consensus 94 ~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~-----w~~v~ii~~d~--~~g~~ 166 (932)
.........+. .++|+|.+....+.......+.+..+..++...+..+++++...+ -++++++.... .....
T Consensus 75 ~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~ 153 (304)
T 3o1i_D 75 HAYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKP 153 (304)
T ss_dssp TSSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CH
T ss_pred hHHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHH
Confidence 32233344455 899999985433211112245567777888888889999998888 88999997542 33455
Q ss_pred hHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHh-cCCceEEEEEeChhhHHHHHHHHHhCCcc
Q 002352 167 MIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLF-TMQTRVFILHMLPSLGSRIFEKANEIGLM 234 (932)
Q Consensus 167 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~-~~~~~viil~~~~~~~~~l~~~a~~~g~~ 234 (932)
..+.+.+++++.|+.+.... ....+.+.....+.++. ..++++ | +++...+..+++++++.|+.
T Consensus 154 R~~gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 154 VTTGFYEAIKNSDIHIVDSF--WADNDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSADKT 218 (304)
T ss_dssp HHHHHHHTTTTBTEEEEECC--CCCSCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTTTCG
T ss_pred HHHHHHHHHhcCCCEEEEee--cCCCcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhcCCC
Confidence 67889999999888776532 22223333333444333 345777 4 45777889999999999986
No 98
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=98.03 E-value=8.5e-05 Score=80.34 Aligned_cols=210 Identities=12% Similarity=0.058 Sum_probs=129.9
Q ss_pred CccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChh
Q 002352 16 TIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSM 94 (932)
Q Consensus 16 ~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~ 94 (932)
....+||++.|... .+......+++.++++. |+.+. +.++..++....+....++.+ +|++||......
T Consensus 61 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~~ 130 (332)
T 2o20_A 61 KRTTTVGVILPTITSTYFAAITRGVDDIASMY-------KYNMI--LANSDNDVEKEEKVLETFLSK-QVDGIVYMGSSL 130 (332)
T ss_dssp -CCCEEEEEESCTTCHHHHHHHHHHHHHHHHT-------TCEEE--EEECTTCHHHHHHHHHHHHHT-TCSEEEECSSCC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc-------CCEEE--EEECCCChHHHHHHHHHHHhC-CCCEEEEeCCCC
Confidence 34578999998533 44555666777666652 34554 446666776655556666654 899888633221
Q ss_pred HHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCC--cCCChHHHHH
Q 002352 95 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLT 172 (932)
Q Consensus 95 ~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~ 172 (932)
....+.. +...++|+|.+....+ . +.+..+..++..-+..+++++...|.+++++|..+.. ........+.
T Consensus 131 ~~~~~~~-l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 203 (332)
T 2o20_A 131 DEKIRTS-LKNSRTPVVLVGTIDG---D---KEIPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQ 203 (332)
T ss_dssp CHHHHHH-HHHHCCCEEEESCCCT---T---SCSCEEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHH
T ss_pred CHHHHHH-HHhCCCCEEEEccccC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHH
Confidence 1222333 3356899998765322 1 2233455666677788888888889999999986532 2345567889
Q ss_pred HHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEe
Q 002352 173 DALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMT 243 (932)
Q Consensus 173 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t 243 (932)
+++++.|+.+.....+....+.++-...+.++.+..+++|+. .+...+..+++++++.|+..|+-+-+++
T Consensus 204 ~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disvig 273 (332)
T 2o20_A 204 EALLEANIEFDENLVFEGNYSYEQGKALAERLLERGATSAVV-SHDTVAVGLLSAMMDKGVKVPEDFEIIS 273 (332)
T ss_dssp HHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHhccCCCEEEE-CChHHHHHHHHHHHHcCCCCccCEEEEE
Confidence 999999976543222222223333334445544337787665 5566788899999999987655444443
No 99
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=98.03 E-value=7.6e-05 Score=80.72 Aligned_cols=209 Identities=12% Similarity=0.042 Sum_probs=129.6
Q ss_pred CccEEEEEEEeC-CCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChh
Q 002352 16 TIPVNVGLVLDM-NGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSM 94 (932)
Q Consensus 16 ~~~i~IG~i~~~-s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~ 94 (932)
....+||++.|. ++.+......+++.++++. |+.+. +.++..++....+....++ ..++++||......
T Consensus 58 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~ 127 (332)
T 2hsg_A 58 KKTTTVGVIIPDISNIFYAELARGIEDIATMY-------KYNII--LSNSDQNQDKELHLLNNML-GKQVDGIIFMSGNV 127 (332)
T ss_dssp C-CCEEEEEEC--CCSHHHHHHHHHHHHHHHH-------TCEEE--EEECCSHHHHHHHHHHHTS-CCSSCCEEECCSSC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc-------CCEEE--EEeCCCChHHHHHHHHHHH-hCCCcEEEEecCCC
Confidence 456789999985 3455566777777777653 34444 4455555554444445555 45888887633322
Q ss_pred HHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcC---CcCCChHHHH
Q 002352 95 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDN---QYGEEMIPSL 171 (932)
Q Consensus 95 ~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~---~~g~~~~~~l 171 (932)
... ....+...++|+|.+....+ . +.+..+..++...+..+++++...|.+++++|.... .........+
T Consensus 128 ~~~-~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf 200 (332)
T 2hsg_A 128 TEE-HVEELKKSPVPVVLAASIES---T---NQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGY 200 (332)
T ss_dssp CHH-HHHHHTTSSSCEEEESCCCS---C---TTSCEEEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHHH
T ss_pred CHH-HHHHHHhCCCCEEEEccccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHHH
Confidence 222 33344568999998765322 1 223345566667778888888888999999998653 2345667889
Q ss_pred HHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 172 TDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 172 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
.+++++.|+.+.....+....+.++-...+.++.+. .+++|+ +.+...+..+++++++.|+..|+-+-++
T Consensus 201 ~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~disvv 272 (332)
T 2hsg_A 201 KRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIF-VGTDEMALGVIHGAQDRGLNVPNDLEII 272 (332)
T ss_dssp HHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCHHHHCEEE
T ss_pred HHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 999999997654221121122333344455555544 466666 4566678889999999998655444333
No 100
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=9.6e-05 Score=79.64 Aligned_cols=211 Identities=10% Similarity=0.054 Sum_probs=128.3
Q ss_pred CccEEEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChhH
Q 002352 16 TIPVNVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSMQ 95 (932)
Q Consensus 16 ~~~i~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~~ 95 (932)
..+.+||++.|.+..+-.....+++.++++ . .|++ +.+.++..++....+....++.+ +|++||....+..
T Consensus 4 ~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~---~---~g~~--l~i~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~~~ 74 (325)
T 2x7x_A 4 TPHFRIGVAQCSDDSWRHKMNDEILREAMF---Y---NGVS--VEIRSAGDDNSKQAEDVHYFMDE-GVDLLIISANEAA 74 (325)
T ss_dssp --CCEEEEEESCCSHHHHHHHHHHHHHHTT---S---SSCE--EEEEECTTCHHHHHHHHHHHHHT-TCSEEEECCSSHH
T ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHH---c---CCcE--EEEeCCCCCHHHHHHHHHHHHHc-CCCEEEEeCCCHH
Confidence 346789999987333333445555555432 1 1344 44566777877777777777765 8998887444332
Q ss_pred -HHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHc--CCeEEEEEEEcCC--cCCChHHH
Q 002352 96 -TNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAF--GWREAVPIYVDNQ--YGEEMIPS 170 (932)
Q Consensus 96 -a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~--~w~~v~ii~~d~~--~g~~~~~~ 170 (932)
.......+...++|+|.+....+. .+.+..+..++...+..+++++... |.+++++|..... ......+.
T Consensus 75 ~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~G 149 (325)
T 2x7x_A 75 PMTPIVEEAYQKGIPVILVDRKILS-----DKYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQG 149 (325)
T ss_dssp HHHHHHHHHHHTTCCEEEESSCCSS-----SCSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEeCCCCCC-----cceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHH
Confidence 233344455679999997643221 1233445567777788888888664 8899999986422 33445678
Q ss_pred HHHHHHhC-CceeeeeeecCCCCChhHHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHhCCccccceEEEEec
Q 002352 171 LTDALQAI-DTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTE 244 (932)
Q Consensus 171 l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~ 244 (932)
+.+++++. |+.+..... ...+.++-...+.++.+. .+++|+ +.+...+..+++++++.|+ +.+...+..|
T Consensus 150 f~~al~~~pg~~~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~aI~-~~nd~~A~g~~~al~~~Gi-p~dv~vig~D 222 (325)
T 2x7x_A 150 FMAAISKFPDIKLIDKAD--AAWERGPAEIEMDSMLRRHPKIDAVY-AHNDRIAPGAYQAAKMAGR-EKEMIFVGID 222 (325)
T ss_dssp HHHHHHTCTEEEEEEEEE--CTTSHHHHHHHHHHHHHHCSCCCEEE-ESSTTHHHHHHHHHHHTTC-TTSSEEEEEE
T ss_pred HHHHHHhCCCCEEEeeec--CCCCHHHHHHHHHHHHHhCCCCCEEE-ECCCchHHHHHHHHHHcCC-CCCeEEEEEC
Confidence 88999988 877653221 122333334445555432 466665 4555677889999999996 3334444443
No 101
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=98.01 E-value=0.00011 Score=77.93 Aligned_cols=208 Identities=11% Similarity=0.007 Sum_probs=130.6
Q ss_pred CccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChh
Q 002352 16 TIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSM 94 (932)
Q Consensus 16 ~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~ 94 (932)
....+||++.|..+ .+-.....+++.++++. |+++. +.++..++....+....++.+ +|++||-.....
T Consensus 18 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgii~~~~~~ 87 (293)
T 2iks_A 18 GRTRSIGLVIPDLENTSYTRIANYLERQARQR-------GYQLL--IACSEDQPDNEMRCIEHLLQR-QVDAIIVSTSLP 87 (293)
T ss_dssp CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHT-------TCEEE--EEECTTCHHHHHHHHHHHHHT-TCSEEEECCSSC
T ss_pred CCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHC-------CCEEE--EEcCCCCHHHHHHHHHHHHHc-CCCEEEEeCCCC
Confidence 45678999998533 44445666666666643 34444 456666776666666666655 898888633322
Q ss_pred HHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCC--cCCChHHHHH
Q 002352 95 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLT 172 (932)
Q Consensus 95 ~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~ 172 (932)
....+...+...++|+|.+....+ . +.+..+..++...+..+++++...|.+++++|..... ........+.
T Consensus 88 ~~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 161 (293)
T 2iks_A 88 PEHPFYQRWANDPFPIVALDRALD---R---EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFR 161 (293)
T ss_dssp TTCHHHHTTTTSSSCEEEEESCCC---T---TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHH
T ss_pred CcHHHHHHHHhCCCCEEEECCccC---c---CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHH
Confidence 222344455678999999765322 1 2234455677777888888888889999999987532 2345577888
Q ss_pred HHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCC--ceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 173 DALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ--TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 173 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
+++++.|...... +....+.++-...+.++.+.. +++|+ +.+...+..+++++++.|+..|+-+-|+
T Consensus 162 ~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 230 (293)
T 2iks_A 162 TAWKDDPREVHFL--YANSYEREAAAQLFEKWLETHPMPQALF-TTSFALLQGVMDVTLRRDGKLPSDLAIA 230 (293)
T ss_dssp HHHTTCCCCEEEE--EESSSCHHHHHHHHHHHTTTSCCCSEEE-ESSHHHHHHHHHHHHHHHSSCCSSCEEE
T ss_pred HHHHHcCCCccEE--EcCCCChhhHHHHHHHHHhcCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 9999988643322 111223344445566665543 55554 4556668889999999998655444443
No 102
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=98.00 E-value=0.00012 Score=77.30 Aligned_cols=197 Identities=7% Similarity=-0.026 Sum_probs=124.5
Q ss_pred EEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCC-hhHH
Q 002352 19 VNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEK-SMQT 96 (932)
Q Consensus 19 i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~-s~~a 96 (932)
.+||++.|..+ .+......+++.++++. |+++ .+.++..++....+....++.+ ++++||.... ....
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-------g~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~~~~~ 72 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQL-------GYEA--TIFDSQNDTAKESAHFDAIIAA-GYDAIIFNPTDADGS 72 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHT-------TCEE--EEEECTTCHHHHHHHHHHHHHT-TCSEEEECCSCTTTT
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHc-------CCEE--EEeCCCCCHHHHHHHHHHHHHc-CCCEEEEecCChHHH
Confidence 47999998643 55556777777777753 3444 4567777887777777777765 8998886433 2222
Q ss_pred HHHHHhcCCCCccEEecccCCCCccCCCCCceEe-cccCchhHHHHHHHHHHHc------CCeE--EEEEEEcC--CcCC
Q 002352 97 NFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFR-GSLNDSSQVGAITAIIKAF------GWRE--AVPIYVDN--QYGE 165 (932)
Q Consensus 97 ~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r-~~ps~~~~~~ai~~~l~~~------~w~~--v~ii~~d~--~~g~ 165 (932)
......+...++|+|.+....+. .+++.. +..++...+..+++++... |.++ ++++.... ....
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~ 147 (290)
T 2fn9_A 73 IANVKRAKEAGIPVFCVDRGINA-----RGLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTW 147 (290)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSC-----SSSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCCCC-----CCceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHH
Confidence 23344455679999997653221 112223 5667777788888888666 7888 66666432 2334
Q ss_pred ChHHHHHHHHHhC-CceeeeeeecCCCCChhHHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHhCCc
Q 002352 166 EMIPSLTDALQAI-DTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGL 233 (932)
Q Consensus 166 ~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~l~~~a~~~g~ 233 (932)
...+.+.+++++. |+.+..... ...+.++-...+.++.+. ++++|+ +.+...+..+++++++.|+
T Consensus 148 ~R~~gf~~~l~~~~g~~~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~ai~-~~~d~~a~g~~~al~~~g~ 215 (290)
T 2fn9_A 148 DRSNGFHSVVDQYPEFKMVAQQS--AEFDRDTAYKVTEQILQAHPEIKAIW-CGNDAMALGAMKACEAAGR 215 (290)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEEE--CTTCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCEEEEecc--CCCCHHHHHHHHHHHHHhCCCCcEEE-ECCchHHHHHHHHHHHCCC
Confidence 5577888999988 877643221 122333344455555432 466665 4566678889999999998
No 103
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=98.00 E-value=0.00021 Score=76.05 Aligned_cols=212 Identities=11% Similarity=0.014 Sum_probs=135.2
Q ss_pred cEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEc-cCChhH
Q 002352 18 PVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILG-PEKSMQ 95 (932)
Q Consensus 18 ~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiG-p~~s~~ 95 (932)
.-+||++.+..+ .+-.....+++.++++. |+++.+. .++..++..-.+....++.+ ++++||- |.....
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~~~-~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~~~~ 74 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQAL-------NVTVEYR-GAAQYDIQEQITVLEQAIAK-NPAGIAISAIDPVE 74 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHH-------TCEEEEE-ECSSSCHHHHHHHHHHHHHH-CCSEEEECCSSTTT
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHc-------CCEEEEe-CCCcCCHHHHHHHHHHHHHh-CCCEEEEcCCCHHH
Confidence 357999998765 55556777888887775 3445432 46677887777777777776 8888774 444333
Q ss_pred HHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHc--CCeEEEEEEEcCC-cCCChHHHHH
Q 002352 96 TNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAF--GWREAVPIYVDNQ-YGEEMIPSLT 172 (932)
Q Consensus 96 a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~--~w~~v~ii~~d~~-~g~~~~~~l~ 172 (932)
.......+...++|+|.+....+. .+.+..+..++...+..+++++... |-++++++..... ......+.+.
T Consensus 75 ~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~ 149 (305)
T 3g1w_A 75 LTDTINKAVDAGIPIVLFDSGAPD-----SHAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFK 149 (305)
T ss_dssp THHHHHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEECCCCCC-----CceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHH
Confidence 344455556679999998654321 1123445677778888888888777 8999999985422 2234467788
Q ss_pred HHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCC--ceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecc
Q 002352 173 DALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ--TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEG 245 (932)
Q Consensus 173 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~ 245 (932)
+++++.|..+.....+....+.+.....+.++.+.. +++| ++.+...+..+++++++.|+. .+...+..|.
T Consensus 150 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~-~di~vig~d~ 222 (305)
T 3g1w_A 150 ETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGI-FATEANGGVGVGDAVRLESRA-GEIQIISFDT 222 (305)
T ss_dssp HHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEE-EESSHHHHHHHHHHHHHTTCT-TTSEEEEESC
T ss_pred HHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEE-EECCCcchhhHHHHHHhcCCC-CCeEEEEeCC
Confidence 888887765543322222334444445555555443 4443 345566788999999999986 4444555443
No 104
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=98.00 E-value=4.3e-05 Score=80.94 Aligned_cols=209 Identities=9% Similarity=0.009 Sum_probs=125.7
Q ss_pred CccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHH---HHHHHHhcCCeEEEEccC
Q 002352 16 TIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAA---AALDLLNNVLVQAILGPE 91 (932)
Q Consensus 16 ~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~---~a~~li~~~~v~aiiGp~ 91 (932)
..+.+||++.|..+ .+......+++.++++. |+++. +.++..++....+ ....++.+ +|++||-..
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~--~~~~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~ 75 (290)
T 2rgy_A 6 QQLGIIGLFVPTFFGSYYGTILKQTDLELRAV-------HRHVV--VATGCGESTPREQALEAVRFLIGR-DCDGVVVIS 75 (290)
T ss_dssp --CCEEEEECSCSCSHHHHHHHHHHHHHHHHT-------TCEEE--EECCCSSSCHHHHHHHHHHHHHHT-TCSEEEECC
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHC-------CCEEE--EEeCCCchhhhhhHHHHHHHHHhc-CccEEEEec
Confidence 44578999998643 44455666777666652 35554 4455445444444 45555554 898888633
Q ss_pred ChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCC--cCCChHH
Q 002352 92 KSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEEMIP 169 (932)
Q Consensus 92 ~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~ 169 (932)
.......+ ..+...++|+|.+....+. +.+..+..++...+..+++++...|-+++++|..... .......
T Consensus 76 ~~~~~~~~-~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 148 (290)
T 2rgy_A 76 HDLHDEDL-DELHRMHPKMVFLNRAFDA------LPDASFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERLD 148 (290)
T ss_dssp SSSCHHHH-HHHHHHCSSEEEESSCCTT------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHHH
T ss_pred CCCCHHHH-HHHhhcCCCEEEEccccCC------CCCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHH
Confidence 32222222 3334478999997653221 2233455677777888889988889999999986532 2345567
Q ss_pred HHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 170 SLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 170 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
.+.+++++.|+.+.....+....+.++-...+.++.+ ..+++|+ +++...+..+++++++.|+..|+-+-|+
T Consensus 149 Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~di~vv 222 (290)
T 2rgy_A 149 GFFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLF-CANDTMAVSALARFQQLGISVPGDVSVI 222 (290)
T ss_dssp HHHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHcCCCCCcccEEecCCChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 8889999998765432122112233333344444443 3567766 4566678899999999998755444343
No 105
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=97.99 E-value=9.9e-05 Score=77.30 Aligned_cols=208 Identities=11% Similarity=0.013 Sum_probs=128.3
Q ss_pred cEEEEEEEeCC-CccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChhHH
Q 002352 18 PVNVGLVLDMN-GEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSMQT 96 (932)
Q Consensus 18 ~i~IG~i~~~s-~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~~a 96 (932)
+-+||++.|.. ..+-.....+++.++++. |+++ .+.++..++....+....++.+ +|++||-.......
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-------g~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdgii~~~~~~~~ 72 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKA-------GYQL--LLGYSDYSIEQEEKLLSTFLES-RPAGVVLFGSEHSQ 72 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHT-------SCEE--CCEECTTCHHHHHHHHHHHHTS-CCCCEEEESSCCCH
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHC-------CCEE--EEEcCCCCHHHHHHHHHHHHhc-CCCEEEEeCCCCCH
Confidence 35799999853 344445666766666542 3444 3445666776666666666654 88876642221112
Q ss_pred HHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCC--cCCChHHHHHHH
Q 002352 97 NFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLTDA 174 (932)
Q Consensus 97 ~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~~~ 174 (932)
.....+...++|+|.+....+ . +.+..+..++...+..+++++...|.+++++|..... ......+.+.++
T Consensus 73 -~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~ 145 (275)
T 3d8u_A 73 -RTHQLLEASNTPVLEIAELSS---K---ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSA 145 (275)
T ss_dssp -HHHHHHHHHTCCEEEESSSCS---S---SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHH
T ss_pred -HHHHHHHhCCCCEEEEeeccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHHH
Confidence 233334457899998764322 1 2344566677777888889888889999999986532 334557788899
Q ss_pred HHhCCceeeeeeecCCCCChhHHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHhCCccccceEEEEe
Q 002352 175 LQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMT 243 (932)
Q Consensus 175 l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t 243 (932)
+++.|+.+.....+....+.++....+.++.+. .+++|+ +.+...+..+++++++.|+..|+-+.|++
T Consensus 146 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg 215 (275)
T 3d8u_A 146 MIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALV-CSHEEIAIGALFECHRRVLKVPTDIAIIC 215 (275)
T ss_dssp HHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHcCCCCCccEEEeCCCChhHHHHHHHHHHhCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 999987654332222222344444555665544 366655 45566788999999999987555444443
No 106
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=97.99 E-value=5.4e-05 Score=80.13 Aligned_cols=208 Identities=15% Similarity=0.036 Sum_probs=118.8
Q ss_pred CccEEEEEEEeCC-CccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEe-cCCCCHHHHHHHHHHHHhcCCeEEEEccCCh
Q 002352 16 TIPVNVGLVLDMN-GEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTR-NSKGDVVAAAAAALDLLNNVLVQAILGPEKS 93 (932)
Q Consensus 16 ~~~i~IG~i~~~s-~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~-D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s 93 (932)
..+.+||++.|.. ..+......+++.++++. |+++. +. ++..++....+....++.+ ++++||.....
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~ 75 (290)
T 3clk_A 6 KSSNVIAAVVSSVRTNFAQQILDGIQEEAHKN-------GYNLI--IVYSGSADPEEQKHALLTAIER-PVMGILLLSIA 75 (290)
T ss_dssp --CCEEEEECCCCSSSHHHHHHHHHHHHHHTT-------TCEEE--EEC----------CHHHHHHSS-CCSEEEEESCC
T ss_pred ccCCEEEEEeCCCCChHHHHHHHHHHHHHHHc-------CCeEE--EEeCCCCCHHHHHHHHHHHHhc-CCCEEEEeccc
Confidence 4457899999853 344455666666665542 34554 34 5555555444555555554 89888763332
Q ss_pred hHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEc--CCcCCChHHHH
Q 002352 94 MQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVD--NQYGEEMIPSL 171 (932)
Q Consensus 94 ~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d--~~~g~~~~~~l 171 (932)
... .....+...++|+|......+. + +..+..++...+..+++++...|-+++++|... ........+.+
T Consensus 76 ~~~-~~~~~l~~~~iPvV~~~~~~~~------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf 147 (290)
T 3clk_A 76 LTD-DNLQLLQSSDVPYCFLSMGFDD------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGY 147 (290)
T ss_dssp -----CHHHHHCC--CEEEESCC--C------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHH
T ss_pred CCH-HHHHHHHhCCCCEEEEcCCCCC------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHH
Confidence 222 2233345589999997653221 2 344566777778888899888899999999854 23345567889
Q ss_pred HHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhc-CCceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 172 TDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 172 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
.+++++.|+.+.....+....+.++-...+.++.+ .++++|+ +.+...+..+++++++.|+..|+-+-++
T Consensus 148 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 218 (290)
T 3clk_A 148 KKALKEANIAINQEWIKPGDYSYTSGEQAMKAFGKNTDLTGII-AASDMTAIGILNQASSFGIEVPKDLSIV 218 (290)
T ss_dssp HHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHcCCCCCcceEEcCCCChhhHHHHHHHHhccCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 99999998765422122222233444455566553 4566655 4556678889999999998755443333
No 107
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=97.99 E-value=7.5e-05 Score=79.03 Aligned_cols=211 Identities=10% Similarity=0.087 Sum_probs=132.0
Q ss_pred CCccEEEEEEEeC------CCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEE
Q 002352 15 TTIPVNVGLVLDM------NGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAIL 88 (932)
Q Consensus 15 ~~~~i~IG~i~~~------s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aii 88 (932)
...+-+||+++|. +..+-.....+++-++++. |++ +.+.++..++..-. ...+.+...++++||
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~-------g~~--~~~~~~~~~~~~~~-~~~~~~~~~~vdgiI 74 (292)
T 3k4h_A 5 NQTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE-------GYA--LYMSTGETEEEIFN-GVVKMVQGRQIGGII 74 (292)
T ss_dssp --CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT-------TCE--EEECCCCSHHHHHH-HHHHHHHTTCCCEEE
T ss_pred cCCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc-------CCE--EEEEeCCCCHHHHH-HHHHHHHcCCCCEEE
Confidence 3456789999997 3345555666776666553 344 44566655554434 444444445899887
Q ss_pred ccCChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCC--cCCC
Q 002352 89 GPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEE 166 (932)
Q Consensus 89 Gp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~ 166 (932)
-....... .....+...++|+|......+.. +.+..+..++...+..+++++...|-++++++..... ....
T Consensus 75 i~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~ 148 (292)
T 3k4h_A 75 LLYSREND-RIIQYLHEQNFPFVLIGKPYDRK-----DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRD 148 (292)
T ss_dssp ESCCBTTC-HHHHHHHHTTCCEEEESCCSSCT-----TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHH
T ss_pred EeCCCCCh-HHHHHHHHCCCCEEEECCCCCCC-----CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHH
Confidence 53332222 34455566799999876533221 1234466677777888999998889999999986533 2345
Q ss_pred hHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 167 MIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 167 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
..+.+.+++++.|..+.....+....+.......+.++.+. ++++|+ +++...+..+++++++.|+..|+-+-|+
T Consensus 149 R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vi 225 (292)
T 3k4h_A 149 RLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIM-ATDDLIGLGVLSALSKKGFVVPKDVSIV 225 (292)
T ss_dssp HHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEE-EcChHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 57889999999987654332222223444555666666655 455554 5566678899999999998755444443
No 108
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=97.99 E-value=9.7e-05 Score=78.63 Aligned_cols=215 Identities=11% Similarity=-0.029 Sum_probs=132.2
Q ss_pred CCccEEEEEEEeCC--CccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEe-cCCCCHHHHHHHHHHHHhcCCeEEEEc-c
Q 002352 15 TTIPVNVGLVLDMN--GEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTR-NSKGDVVAAAAAALDLLNNVLVQAILG-P 90 (932)
Q Consensus 15 ~~~~i~IG~i~~~s--~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~-D~~~~~~~a~~~a~~li~~~~v~aiiG-p 90 (932)
..++.+||+++|.. ..+-.....+++-++++.+ |+.+.+... ++..++..-.+....++.+ ++++||- |
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~------g~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~vdgiii~~ 77 (304)
T 3gbv_A 5 SNKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYS------DFNISANITHYDPYDYNSFVATSQAVIEE-QPDGVMFAP 77 (304)
T ss_dssp --CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTG------GGCEEEEEEEECSSCHHHHHHHHHHHHTT-CCSEEEECC
T ss_pred cCCcceEEEEecCCCCchHHHHHHHHHHHHHHHHH------hCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCEEEECC
Confidence 45678999999985 4555566777777776641 355666554 4456776666666666665 8888875 3
Q ss_pred CChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCC--eEEEEEEEcC------C
Q 002352 91 EKSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGW--REAVPIYVDN------Q 162 (932)
Q Consensus 91 ~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w--~~v~ii~~d~------~ 162 (932)
............+...++|+|.+....+.. +.+..+..++...+..+++++...|. +++++|.... .
T Consensus 78 ~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~ 152 (304)
T 3gbv_A 78 TVPQYTKGFTDALNELGIPYIYIDSQIKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSN 152 (304)
T ss_dssp SSGGGTHHHHHHHHHHTCCEEEESSCCTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCH
T ss_pred CChHHHHHHHHHHHHCCCeEEEEeCCCCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccch
Confidence 433334445555666799999986533211 12445567777788889999888777 9999998431 2
Q ss_pred cCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHhCCccccceEE
Q 002352 163 YGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVW 240 (932)
Q Consensus 163 ~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~w 240 (932)
......+.+.+++++.|..+..........+.+.....+.++.+ .++++|+...+. +..+++++++.|+ .+...
T Consensus 153 ~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~--a~g~~~al~~~g~--~di~v 228 (304)
T 3gbv_A 153 QQESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITFNSK--VYIIGEYLQQRRK--SDFSL 228 (304)
T ss_dssp HHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESSSC--THHHHHHHHHTTC--CSCEE
T ss_pred hHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcCcc--hHHHHHHHHHcCC--CCcEE
Confidence 33455788889999887643322211111121222333444332 356776655544 7789999999998 44444
Q ss_pred EEecc
Q 002352 241 IMTEG 245 (932)
Q Consensus 241 i~t~~ 245 (932)
+..|.
T Consensus 229 ig~d~ 233 (304)
T 3gbv_A 229 IGYDL 233 (304)
T ss_dssp EEESC
T ss_pred EEeCC
Confidence 54443
No 109
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=97.97 E-value=0.00041 Score=73.45 Aligned_cols=200 Identities=12% Similarity=0.121 Sum_probs=128.2
Q ss_pred cEEEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChhHHH
Q 002352 18 PVNVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSMQTN 97 (932)
Q Consensus 18 ~i~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~~a~ 97 (932)
..+||++-+.+..+-.....|++-++++ .|- .|.++.+.+.|+++++........++.++ +|++||...+ ....
T Consensus 2 ~~~Igvi~~~~~p~~~~i~~gi~~~l~~---~gy-~g~~v~l~~~~~~~~~~~~~~~~~~l~~~-~vDgII~~~~-~~~~ 75 (295)
T 3lft_A 2 NAKIGVLQFVSHPSLDLIYKGIQDGLAE---EGY-KDDQVKIDFMNSEGDQSKVATMSKQLVAN-GNDLVVGIAT-PAAQ 75 (295)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHHHHHH---TTC-CGGGEEEEEEECTTCHHHHHHHHHHHTTS-SCSEEEEESH-HHHH
T ss_pred ceEEEEEEccCChhHHHHHHHHHHHHHH---cCC-CCCceEEEEecCCCCHHHHHHHHHHHHhc-CCCEEEECCc-HHHH
Confidence 4689998444454444556666665554 332 45688888999999998877777777654 8999997543 2333
Q ss_pred HHHHhcCCCCccEEecccCCCCcc----C--CCCCceEecccCchhHHHHHHHHHHHc--CCeEEEEEEEcCCc-CCChH
Q 002352 98 FIIQLGNKSQVPILSFSATSPSLT----S--IRSSYFFRGSLNDSSQVGAITAIIKAF--GWREAVPIYVDNQY-GEEMI 168 (932)
Q Consensus 98 ~v~~~~~~~~iP~Is~~a~~~~l~----~--~~~p~~~r~~ps~~~~~~ai~~~l~~~--~w~~v~ii~~d~~~-g~~~~ 168 (932)
.+... ..++|+|..+...+... + ....++..+. +...+...++++... |-+++++|+..... +....
T Consensus 76 ~~~~~--~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~ 151 (295)
T 3lft_A 76 GLASA--TKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQV 151 (295)
T ss_dssp HHHHH--CSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHH
T ss_pred HHHHc--CCCCCEEEEeccChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHH
Confidence 33332 46899998765444221 1 1123444433 233355666777666 88999999976442 44557
Q ss_pred HHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCc
Q 002352 169 PSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGL 233 (932)
Q Consensus 169 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~ 233 (932)
+.+++++++.|+.+...... +.++....+.++. .++++|+...+ ..+...++++.+.|.
T Consensus 152 ~g~~~al~~~gi~~~~~~~~----~~~~~~~~~~~l~-~~~dai~~~~D-~~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 152 EEFKAYAEKAGLTVETFAVP----STNEIASTVTVMT-SKVDAIWVPID-NTIASGFPTVVSSNQ 210 (295)
T ss_dssp HHHHHHHHHTTCEEEEEEES----SGGGHHHHHHHHT-TTCSEEEECSC-HHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEEEEecC----CHHHHHHHHHHHH-hcCCEEEECCc-hhHHHHHHHHHHHHH
Confidence 88999999999987654332 2346677777776 47888877544 445556666776664
No 110
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=97.96 E-value=6.9e-05 Score=79.17 Aligned_cols=207 Identities=12% Similarity=0.069 Sum_probs=126.3
Q ss_pred cEEEEEEEeC-----CCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCC
Q 002352 18 PVNVGLVLDM-----NGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEK 92 (932)
Q Consensus 18 ~i~IG~i~~~-----s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~ 92 (932)
+-+||++.|. +..+-.....+++.++++. |+++. +.++..++....+....++. .+|++||-...
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~ 73 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAV-------NYFVL--PFPFSEDRSQIDIYRDLIRS-GNVDGFVLSSI 73 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHT-------TCEEE--ECCCCSSTTCCHHHHHHHHT-TCCSEEEECSC
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHHc-------CCEEE--EEeCCCchHHHHHHHHHHHc-CCCCEEEEeec
Confidence 4579999986 4455556677777776653 34544 44544444333444455554 48988886332
Q ss_pred hhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCC--cCCChHHH
Q 002352 93 SMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPS 170 (932)
Q Consensus 93 s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~ 170 (932)
...... ...+...++|+|.+....+ . +.+..+..++...+..+++++...|-+++++|..... ......+.
T Consensus 74 ~~~~~~-~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 146 (287)
T 3bbl_A 74 NYNDPR-VQFLLKQKFPFVAFGRSNP---D---WDFAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQG 146 (287)
T ss_dssp CTTCHH-HHHHHHTTCCEEEESCCST---T---CCCCEEEECHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCcHH-HHHHHhcCCCEEEECCcCC---C---CCCCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHH
Confidence 222222 3334457999999865322 1 1233455677777888888887779999999986432 33455778
Q ss_pred HHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhc-C---CceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 171 LTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT-M---QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 171 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~-~---~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
+.+++++.|+.+.....+....+.++-...+.++.+ . ++++|+ +.+...+..+++++++.|+..|+-+-|+
T Consensus 147 f~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~vP~di~vi 221 (287)
T 3bbl_A 147 YLEAMQTAQLPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTAIM-TLNDTMAIGAMAAARERGLTIGTDLAII 221 (287)
T ss_dssp HHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSEEE-ESSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCCEEEE
Confidence 889999998765432112112233344455666655 3 456655 4566678889999999998755443333
No 111
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=97.94 E-value=9.6e-05 Score=78.17 Aligned_cols=210 Identities=12% Similarity=0.026 Sum_probs=131.8
Q ss_pred CCccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCCh
Q 002352 15 TTIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKS 93 (932)
Q Consensus 15 ~~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s 93 (932)
.....+||+++|... .+-.....+++-++++. |+++ .+.++..++....+....++.+ ++++||-....
T Consensus 5 ~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~-------g~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~~~ 74 (291)
T 3egc_A 5 SKRSNVVGLIVSDIENVFFAEVASGVESEARHK-------GYSV--LLANTAEDIVREREAVGQFFER-RVDGLILAPSE 74 (291)
T ss_dssp --CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT-------TCEE--EEEECTTCHHHHHHHHHHHHHT-TCSEEEECCCS
T ss_pred cCCCcEEEEEECCCcchHHHHHHHHHHHHHHHC-------CCEE--EEEeCCCCHHHHHHHHHHHHHC-CCCEEEEeCCC
Confidence 345678999998654 44445666777666653 3444 4556666776666666666655 88888853333
Q ss_pred hHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcC--CcCCChHHHH
Q 002352 94 MQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDN--QYGEEMIPSL 171 (932)
Q Consensus 94 ~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l 171 (932)
. .......+...++|+|......+. +.+..+..++...+..+++++...|-++++++.... .......+.+
T Consensus 75 ~-~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf 147 (291)
T 3egc_A 75 G-EHDYLRTELPKTFPIVAVNRELRI------PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGF 147 (291)
T ss_dssp S-CCHHHHHSSCTTSCEEEESSCCCC------TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHH
T ss_pred C-ChHHHHHhhccCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHH
Confidence 3 344556677789999987654321 223455667778888899999888999999998643 2334557888
Q ss_pred HHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 172 TDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 172 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
.+++++.|+.+..........+.+.....+.++.+ .++++|+ +.+...+..+++++++.|+..|+-+-|+
T Consensus 148 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 219 (291)
T 3egc_A 148 RAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALL-TSSHRITEGAMQALNVLGLRYGPDVEIV 219 (291)
T ss_dssp HHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEE-ESSHHHHHHHHHHHHHHTCCBTTTBEEE
T ss_pred HHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 89999988765432221111111222233444442 3466655 4666778899999999998755444444
No 112
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=97.93 E-value=0.00022 Score=75.35 Aligned_cols=210 Identities=10% Similarity=0.054 Sum_probs=133.2
Q ss_pred CCccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEc-cCC
Q 002352 15 TTIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILG-PEK 92 (932)
Q Consensus 15 ~~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiG-p~~ 92 (932)
.....+||+++|... .+-.....+++.++++. |+ .+.+.++..++..-.+....++.+ ++++||- |..
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-------g~--~~~~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~ 74 (293)
T 3l6u_A 5 SPKRNIVGFTIVNDKHEFAQRLINAFKAEAKAN-------KY--EALVATSQNSRISEREQILEFVHL-KVDAIFITTLD 74 (293)
T ss_dssp ----CEEEEEESCSCSHHHHHHHHHHHHHHHHT-------TC--EEEEEECSSCHHHHHHHHHHHHHT-TCSEEEEECSC
T ss_pred CCCCcEEEEEEecCCcHHHHHHHHHHHHHHHHc-------CC--EEEEECCCCCHHHHHHHHHHHHHc-CCCEEEEecCC
Confidence 345678999998654 44455666777666654 34 444566677877777777777765 8888775 333
Q ss_pred hhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHH-c-CCe-----EEEEEEEcC--Cc
Q 002352 93 SMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKA-F-GWR-----EAVPIYVDN--QY 163 (932)
Q Consensus 93 s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~-~-~w~-----~v~ii~~d~--~~ 163 (932)
..........+...++|+|.+....+. .+.+..+..++...+..+++++.. + |-+ ++++|.... ..
T Consensus 75 ~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~ 149 (293)
T 3l6u_A 75 DVYIGSAIEEAKKAGIPVFAIDRMIRS-----DAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYT 149 (293)
T ss_dssp TTTTHHHHHHHHHTTCCEEEESSCCCC-----TTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHH
T ss_pred hHHHHHHHHHHHHcCCCEEEecCCCCC-----CcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCch
Confidence 333334455556679999998654322 123455667777788888888766 5 666 999998543 23
Q ss_pred CCChHHHHHHHHHhC-CceeeeeeecCCCCChhHHHHHHHHHhcCC--ceEEEEEeChhhHHHHHHHHHhCCccccceEE
Q 002352 164 GEEMIPSLTDALQAI-DTRVPYRSVISPLATDDQIEKELYKLFTMQ--TRVFILHMLPSLGSRIFEKANEIGLMNKGCVW 240 (932)
Q Consensus 164 g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~l~~~a~~~g~~~~~~~w 240 (932)
.....+.+.+++++. |+.+..... ...+.++....+.++.+.. +++| ++.+...+..+++++++.|+. +...
T Consensus 150 ~~~R~~gf~~~l~~~~g~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~--di~v 224 (293)
T 3l6u_A 150 TNERHRGFLKGIENEPTLSIVDSVS--GNYDPVTSERVMRQVIDSGIPFDAV-YCHNDDIAMGVLEALKKAKIS--GKIV 224 (293)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEEEEE--CTTCHHHHHHHHHHHHHTTCCCSEE-EESSHHHHHHHHHHHHHTTCC--CCEE
T ss_pred HHHHHHHHHHHHHhCCCcEEeeecc--CCCCHHHHHHHHHHHHHhCCCCCEE-EECCchHHHHHHHHHHhCCCC--CeEE
Confidence 345578889999998 888765422 2234445555566665443 4444 445666788999999999985 3334
Q ss_pred EEec
Q 002352 241 IMTE 244 (932)
Q Consensus 241 i~t~ 244 (932)
+..|
T Consensus 225 ig~d 228 (293)
T 3l6u_A 225 VGID 228 (293)
T ss_dssp EEEE
T ss_pred EEec
Confidence 4433
No 113
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=97.90 E-value=0.00035 Score=75.75 Aligned_cols=211 Identities=11% Similarity=0.045 Sum_probs=128.8
Q ss_pred CccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChh
Q 002352 16 TIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSM 94 (932)
Q Consensus 16 ~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~ 94 (932)
....+||++.|... .+......+++.++++. |+++. +.++..++....+....++.+ +|++||-.....
T Consensus 56 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~~ 125 (340)
T 1qpz_A 56 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQK-------GYTLI--LGNAWNNLEKQRAYLSMMAQK-RVDGLLVMCSEY 125 (340)
T ss_dssp TCCSEEEEEESCSCSHHHHHHHHHHHHHHHHT-------TCEEE--EEECTTCHHHHHHHHHHHHHT-TCSEEEECCSCC
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHc-------CCEEE--EEeCCCCHHHHHHHHHHHHcC-CCCEEEEeCCCC
Confidence 34568999998643 44455666777666652 34554 456666776655556666654 898888532221
Q ss_pred HHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCC--cCCChHHHHH
Q 002352 95 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLT 172 (932)
Q Consensus 95 ~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~ 172 (932)
.......+.+..++|+|.+....+. .++...+..++..-+..+++++...|.+++++|..... ........+.
T Consensus 126 ~~~~~~~l~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~ 200 (340)
T 1qpz_A 126 PEPLLAMLEEYRHIPMVVMDWGEAK-----ADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFM 200 (340)
T ss_dssp CHHHHHHHHTTTTSCEEEEEESSCC-----CSSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHH
T ss_pred ChHHHHHHHhhCCCCEEEEecccCC-----CCCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHHH
Confidence 1111222223368999987653221 12223455666677788888887779999999975432 2345577889
Q ss_pred HHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 173 DALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 173 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
+++++.|+.+.....+....+.++-...+.++.+. .+++|+. .+...+..+++++++.|+..|+-+-|+
T Consensus 201 ~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~disvi 271 (340)
T 1qpz_A 201 KAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDVSLI 271 (340)
T ss_dssp HHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHCCCCCChhheEeCCCCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 99999987654322222222333444555665543 4666554 556678889999999998765544444
No 114
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=97.89 E-value=0.00052 Score=72.12 Aligned_cols=205 Identities=10% Similarity=0.083 Sum_probs=125.8
Q ss_pred EEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEc-cCChhHHH
Q 002352 20 NVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILG-PEKSMQTN 97 (932)
Q Consensus 20 ~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiG-p~~s~~a~ 97 (932)
+||++.|..+ .+......+++.++++. |+. +.+.++..++..-.+....++.+ +|++||- |.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~-------g~~--~~~~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~~~~~~ 72 (283)
T 2ioy_A 3 TIGLVISTLNNPFFVTLKNGAEEKAKEL-------GYK--IIVEDSQNDSSKELSNVEDLIQQ-KVDVLLINPVDSDAVV 72 (283)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH-------TCE--EEEEECTTCHHHHHHHHHHHHHT-TCSEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhc-------CcE--EEEecCCCCHHHHHHHHHHHHHc-CCCEEEEeCCchhhhH
Confidence 6899988644 44556677777777664 244 34556667777666667777755 8888764 44333322
Q ss_pred HHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHc-C-CeEEEEEEEcCC--cCCChHHHHHH
Q 002352 98 FIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAF-G-WREAVPIYVDNQ--YGEEMIPSLTD 173 (932)
Q Consensus 98 ~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~-~-w~~v~ii~~d~~--~g~~~~~~l~~ 173 (932)
.....+...++|+|.+....+ . .+.+..+..++...+..+++++... | -+++++|..... ......+.+.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~--~~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (283)
T 2ioy_A 73 TAIKEANSKNIPVITIDRSAN---G--GDVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDE 147 (283)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---S--SCCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEecCCCC---C--cceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHH
Confidence 334445567999998764321 1 1122334556666677788887665 5 899999985432 22345677888
Q ss_pred HHHhC-CceeeeeeecCCCCChhHHHHHHHHHhcCC--ceEEEEEeChhhHHHHHHHHHhCCccccceEEEEec
Q 002352 174 ALQAI-DTRVPYRSVISPLATDDQIEKELYKLFTMQ--TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTE 244 (932)
Q Consensus 174 ~l~~~-g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~ 244 (932)
++++. |+.+..... ...+.++-...+.++.+.. +++ |++++...+..+++++++.|+ .+...+.-|
T Consensus 148 al~~~~~~~~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~a-i~~~nD~~A~g~~~al~~~G~--~di~viG~D 216 (283)
T 2ioy_A 148 AIAKYPDIKIVAKQA--ADFDRSKGLSVMENILQAQPKIDA-VFAQNDEMALGAIKAIEAANR--QGIIVVGFD 216 (283)
T ss_dssp HHTTCTTEEEEEEEE--CTTCHHHHHHHHHHHHHHCSCCCE-EEESSHHHHHHHHHHHHHTTC--CCCEEEEEE
T ss_pred HHHhCCCCEEEeecc--CCCCHHHHHHHHHHHHHhCCCccE-EEECCchHHHHHHHHHHHCCC--CCcEEEEeC
Confidence 99887 877643221 1223344444555554433 444 345566678899999999998 444444444
No 115
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=97.87 E-value=0.0003 Score=74.87 Aligned_cols=215 Identities=9% Similarity=-0.023 Sum_probs=131.5
Q ss_pred cEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEc-cCChhH
Q 002352 18 PVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILG-PEKSMQ 95 (932)
Q Consensus 18 ~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiG-p~~s~~ 95 (932)
+++||++.|..+ .+-.....+++.++++. |+++ .+.++ .++..-.+....++.+ +|++||- |.....
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-------g~~~--~~~~~-~~~~~~~~~i~~l~~~-~vdgiii~~~~~~~ 70 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDL-------GFEV--IKIAV-PDGEKTLNAIDSLAAS-GAKGFVICTPDPKL 70 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHH-------TEEE--EEEEC-CSHHHHHHHHHHHHHT-TCCEEEEECSCGGG
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHc-------CCEE--EEeCC-CCHHHHHHHHHHHHHc-CCCEEEEeCCCchh
Confidence 589999998654 55556777788777775 3444 45666 4777777777777776 7888775 444444
Q ss_pred HHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHH-HcCCe-----EEEEEE-EcC--CcCCC
Q 002352 96 TNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIK-AFGWR-----EAVPIY-VDN--QYGEE 166 (932)
Q Consensus 96 a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~-~~~w~-----~v~ii~-~d~--~~g~~ 166 (932)
.......+...++|+|.+....+.......+.+..+..++...+..+++++. ..|-+ +++++. ... .....
T Consensus 71 ~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~~ 150 (306)
T 8abp_A 71 GSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 150 (306)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHHH
T ss_pred hHHHHHHHHHCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHHH
Confidence 4555556677899999987432221111111334455566666776666653 33433 888886 332 22344
Q ss_pred hHHHHHHHHHhCCce---eeeeeecCCCCChhHHHHHHHHHhcCC--ceE-EEEEeChhhHHHHHHHHHhCCccccceEE
Q 002352 167 MIPSLTDALQAIDTR---VPYRSVISPLATDDQIEKELYKLFTMQ--TRV-FILHMLPSLGSRIFEKANEIGLMNKGCVW 240 (932)
Q Consensus 167 ~~~~l~~~l~~~g~~---v~~~~~~~~~~~~~~~~~~l~~l~~~~--~~v-iil~~~~~~~~~l~~~a~~~g~~~~~~~w 240 (932)
..+.+.+++++.|.. +.... ....+.+.-...+.++.+.. ++. +|++++...+..+++++++.|+...+...
T Consensus 151 R~~Gf~~~l~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~di~v 228 (306)
T 8abp_A 151 RTTGSMDALKAAGFPEKQIYQVP--TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 228 (306)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEE--CSSSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred HHHHHHHHHHhcCCCCcEEEeec--cCCCChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCCCCceEE
Confidence 567888899887742 32221 12234444555666666554 455 35556667788999999999986533344
Q ss_pred EEecc
Q 002352 241 IMTEG 245 (932)
Q Consensus 241 i~t~~ 245 (932)
+..|.
T Consensus 229 vG~D~ 233 (306)
T 8abp_A 229 IGING 233 (306)
T ss_dssp EEESS
T ss_pred EEeCc
Confidence 44443
No 116
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=97.86 E-value=4.6e-05 Score=80.13 Aligned_cols=204 Identities=12% Similarity=0.010 Sum_probs=124.3
Q ss_pred CccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChh
Q 002352 16 TIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSM 94 (932)
Q Consensus 16 ~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~ 94 (932)
.+.-+||+++|... .+-.....+++.++++. |+.+.+...+ ++..-.+....++.+ ++++|| -....
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~~~~~~---~~~~~~~~~~~l~~~-~vdgiI-~~~~~ 70 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPK-------GYRLSVIDSL---TSQAGTDPITSALSM-RPDGII-IAQDI 70 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGGG-------TCEEEEECSS---SSCSSSCHHHHHHTT-CCSEEE-EESCC
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHHC-------CCEEEEEeCC---CchHHHHHHHHHHhC-CCCEEE-ecCCC
Confidence 34578999998654 55556677777666553 3455444433 333333344445544 899988 33322
Q ss_pred HHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHH
Q 002352 95 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDA 174 (932)
Q Consensus 95 ~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~ 174 (932)
....+.. .++|+|.+....+ ... .+..+..++...+..+++++...|-++++++...........+.+.++
T Consensus 71 ~~~~~~~----~~iPvV~~~~~~~--~~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~ 141 (280)
T 3gyb_A 71 PDFTVPD----SLPPFVIAGTRIT--QAS---THDSVANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEAT 141 (280)
T ss_dssp ------------CCCEEEESCCCS--SSC---STTEEEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHH
T ss_pred ChhhHhh----cCCCEEEECCCCC--CCC---CCCEEEechHHHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHH
Confidence 2222222 8999999865432 112 223355677777888999998889999999987544455567888899
Q ss_pred HHhCCceeeeeeecCCCCChhHHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 175 LQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 175 l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
+++.|..+.... +....+.++....+.++.+. .+++|+ +++...+..+++++++.|+..|+-+-|+
T Consensus 142 l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 209 (280)
T 3gyb_A 142 MRAHGLEPLSND-YLGPAVEHAGYTETLALLKEHPEVTAIF-SSNDITAIGALGAARELGLRVPEDLSII 209 (280)
T ss_dssp HHHTTCCCEECC-CCSCCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTCEEE
T ss_pred HHHcCcCCCccc-ccCCCCHHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCeeEEE
Confidence 999998765332 32233444444555555443 355554 4566778899999999998755444444
No 117
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=97.86 E-value=0.00031 Score=73.22 Aligned_cols=206 Identities=9% Similarity=-0.003 Sum_probs=131.3
Q ss_pred EEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChhHHH
Q 002352 19 VNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSMQTN 97 (932)
Q Consensus 19 i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~~a~ 97 (932)
-+||+++|... .+-.....+++-++++. |+++. +.++..++..-.+....++.+ ++++||-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~~~~~~~ 72 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARAR-------GYQLL--IASSDDQPDSERQLQQLFRAR-RCDALFVASCLPPED 72 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHT-------TCEEE--EEECTTCHHHHHHHHHHHHHT-TCSEEEECCCCCSSC
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHC-------CCEEE--EEeCCCCHHHHHHHHHHHHHc-CCCEEEEecCccccH
Confidence 47999998754 44455666777666653 34444 456666776666666666665 888877533321123
Q ss_pred HHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCC--cCCChHHHHHHHH
Q 002352 98 FIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLTDAL 175 (932)
Q Consensus 98 ~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~~~l 175 (932)
.....+...++|+|......+. +.+..+..++...+..+++++...|-++++++..... ........+.+++
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l 146 (272)
T 3o74_A 73 DSYRELQDKGLPVIAIDRRLDP------AHFCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEAL 146 (272)
T ss_dssp CHHHHHHHTTCCEEEESSCCCT------TTCEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEccCCCc------cccCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHH
Confidence 3344455679999987653321 1233455677777888889998889999999987533 3345578889999
Q ss_pred HhCCceeeeeeecCCCCChhHHHHHHHHHhcC---CceEEEEEeChhhHHHHHHHHHhCCccccce-EEEEec
Q 002352 176 QAIDTRVPYRSVISPLATDDQIEKELYKLFTM---QTRVFILHMLPSLGSRIFEKANEIGLMNKGC-VWIMTE 244 (932)
Q Consensus 176 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~---~~~viil~~~~~~~~~l~~~a~~~g~~~~~~-~wi~t~ 244 (932)
++.|+.+..... ...+.++....+.++.+. .+++|+ +.+...+..+++++++.|+ .++- ..+.-|
T Consensus 147 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~-vp~di~vvg~d 215 (272)
T 3o74_A 147 QGYTGEVRRYQG--EAFSRECGQRLMQQLIDDLGGLPDALV-TTSYVLLQGVFDTLQARPV-DSRQLQLGTFG 215 (272)
T ss_dssp TTCCSEEEEEEE--SSSSHHHHHHHHHHHHHHHTSCCSEEE-ESSHHHHHHHHHHHHTSCG-GGCCCEEEEES
T ss_pred HHcCCChheeec--CCCCHHHHHHHHHHHHhcCCCCCcEEE-EeCchHHHHHHHHHHHcCC-CccceEEEEeC
Confidence 999977654322 223344444455554432 467654 4566778899999999998 4443 444443
No 118
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=97.86 E-value=9.3e-05 Score=79.97 Aligned_cols=203 Identities=12% Similarity=0.045 Sum_probs=126.5
Q ss_pred CccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChh
Q 002352 16 TIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSM 94 (932)
Q Consensus 16 ~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~ 94 (932)
....+||++.|..+ .+......+++.++++. |+.+. +.++..++.........++.+ +|++|| .....
T Consensus 58 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiI-~~~~~ 126 (330)
T 3ctp_A 58 KNSKTIGLMVPNISNPFFNQMASVIEEYAKNK-------GYTLF--LCNTDDDKEKEKTYLEVLQSH-RVAGII-ASRSQ 126 (330)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHT-------TCEEE--EEECTTCHHHHHHHHHHHHHT-TCSEEE-EETCC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHC-------CCEEE--EEeCCCChHHHHHHHHHHHhC-CCCEEE-ECCCC
Confidence 44678999998644 44455667777766642 35554 456666776666666666655 899998 43322
Q ss_pred HHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCC--cCCChHHHHH
Q 002352 95 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLT 172 (932)
Q Consensus 95 ~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~ 172 (932)
.. ..+...++|+|.+....+. . +..+..++...+..+++++...|.+++++|..... ........+.
T Consensus 127 ~~----~~l~~~~iPvV~~~~~~~~----~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 195 (330)
T 3ctp_A 127 CE----DEYANIDIPVVAFENHILD----N---IITISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGFL 195 (330)
T ss_dssp CS----GGGTTCCSCEEEESSCCCT----T---SCEEEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHH
T ss_pred CH----HHHHhcCCCEEEEeccCCC----C---CCEEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCccCccHHHHHHHHH
Confidence 21 2345789999997653321 1 22345566666788888888889999999986532 3445578889
Q ss_pred HHHHhCCceeeeeeecCCCCChhHHHHHHHHHhc-CCceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 173 DALQAIDTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 173 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
+++++.|+.+. ...+....+.++-...+.++.+ .++++|+. .+...+..+++++++.|+..|+-+-++
T Consensus 196 ~al~~~g~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disvv 264 (330)
T 3ctp_A 196 DGARAKDLEID-FIEFQHDFQVKMLEEDINSMKDIVNYDGIFV-FNDIAAATVMRALKKRGVSIPQEVQII 264 (330)
T ss_dssp HHHHHTTCCCE-EEECSSSCCGGGGGCCCTTGGGGGGSSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHcCCCcc-eeEEcCCCCHHHHHHHHHHHhcCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 99999998665 3222212222222222333333 25666654 455668889999999998766544444
No 119
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=97.84 E-value=0.00066 Score=71.59 Aligned_cols=207 Identities=12% Similarity=0.076 Sum_probs=128.2
Q ss_pred CCccEEEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChh
Q 002352 15 TTIPVNVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSM 94 (932)
Q Consensus 15 ~~~~i~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~ 94 (932)
....-+||++++.+..+-.....+++-++++. |+++.+...+...+ -.+....++. .+|++||-.....
T Consensus 9 ~~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~-------g~~~~~~~~~~~~~---~~~~~~~l~~-~~vdgiIi~~~~~ 77 (289)
T 3k9c_A 9 QASSRLLGVVFELQQPFHGDLVEQIYAAATRR-------GYDVMLSAVAPSRA---EKVAVQALMR-ERCEAAILLGTRF 77 (289)
T ss_dssp ----CEEEEEEETTCHHHHHHHHHHHHHHHHT-------TCEEEEEEEBTTBC---HHHHHHHHTT-TTEEEEEEETCCC
T ss_pred cCCCCEEEEEEecCCchHHHHHHHHHHHHHHC-------CCEEEEEeCCCCHH---HHHHHHHHHh-CCCCEEEEECCCC
Confidence 44567899999655555556667777666653 35666555444333 2334445554 4899988533322
Q ss_pred HHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCC-cCCChHHHHHH
Q 002352 95 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQ-YGEEMIPSLTD 173 (932)
Q Consensus 95 ~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~-~g~~~~~~l~~ 173 (932)
....+..+ .. ++|+|......+ .+.+..+..++..-+..+++++...|-++++++..... ......+.+.+
T Consensus 78 ~~~~~~~~-~~-~iPvV~i~~~~~------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~ 149 (289)
T 3k9c_A 78 DTDELGAL-AD-RVPALVVARASG------LPGVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLA 149 (289)
T ss_dssp CHHHHHHH-HT-TSCEEEESSCCS------STTSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHH
T ss_pred CHHHHHHH-Hc-CCCEEEEcCCCC------CCCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHH
Confidence 23333333 44 999998765332 12234556677777888889988889999999986543 23445778889
Q ss_pred HHHhCCceeeeeeecCCCCChhHHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 174 ALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 174 ~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
++++.|..+... .+....+.++-...+.++.+. ++++| ++++...+..+++++++.|+..|+-+-|+
T Consensus 150 al~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~A~g~~~al~~~g~~vP~di~vi 218 (289)
T 3k9c_A 150 AMDRHGLSASAT-VVTGGTTETEGAEGMHTLLEMPTPPTAV-VAFNDRCATGVLDLLVRSGRDVPADISVV 218 (289)
T ss_dssp HHHHTTCGGGEE-EECCCSSHHHHHHHHHHHHTSSSCCSEE-EESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHCCCCCCcc-EEECCCCHHHHHHHHHHHHcCCCCCCEE-EECChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999999774332 222233444455566666553 45554 34566678899999999998766544444
No 120
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=97.82 E-value=0.00023 Score=75.05 Aligned_cols=209 Identities=8% Similarity=0.022 Sum_probs=127.3
Q ss_pred CccEEEEEEEeCCC---ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCC
Q 002352 16 TIPVNVGLVLDMNG---EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEK 92 (932)
Q Consensus 16 ~~~i~IG~i~~~s~---~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~ 92 (932)
..+-+||+++|... .+-.....+++-++++ .|+++.+. +...++.. .....+++...+|++||-...
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~-------~g~~~~~~--~~~~~~~~-~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLST-------TQYHLVVT--PHIHAKDS-MVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT-------SSCEEEEC--CBSSGGGT-THHHHHHHHHTCCSEEEEESC
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHH-------cCCEEEEe--cCCcchhH-HHHHHHHHHcCCccEEEEecC
Confidence 45578999999654 3333444555544433 24555544 33333322 233444454457877774222
Q ss_pred hhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCC--cCCChHHH
Q 002352 93 SMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPS 170 (932)
Q Consensus 93 s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~ 170 (932)
.... .....+...++|+|......+. +.+-.+..++...+..+++++...|-+++++|..... ......+.
T Consensus 76 ~~~~-~~~~~l~~~~iPvV~i~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~g 148 (288)
T 3gv0_A 76 EPND-PRVRFMTERNMPFVTHGRSDMG------IEHAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKG 148 (288)
T ss_dssp CTTC-HHHHHHHHTTCCEEEESCCCSS------CCCEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHH
T ss_pred CCCc-HHHHHHhhCCCCEEEECCcCCC------CCCcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHH
Confidence 2222 3344455679999987653221 1223455677778888999998889999999986533 23455788
Q ss_pred HHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCC--ceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 171 LTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ--TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 171 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
+.+++++.|+.+.....+....+.++....+.++.+.. +++|+ +++...+..+++++++.|+..|+-+-|+
T Consensus 149 f~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vi 221 (288)
T 3gv0_A 149 FNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGIV-SISGSSTIALVAGFEAAGVKIGEDVDIV 221 (288)
T ss_dssp HHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEE-ESCHHHHHHHHHHHHTTTCCTTTSCEEE
T ss_pred HHHHHHHcCCCcchhheeccccchHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 99999999987654433333334455556667766543 55554 5566678889999999998765544444
No 121
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=97.78 E-value=0.00045 Score=74.92 Aligned_cols=209 Identities=10% Similarity=0.075 Sum_probs=126.3
Q ss_pred CCccEEEEEEEeC--CCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCC--CCHHHHHHHHHHHHhcCCeEEEEcc
Q 002352 15 TTIPVNVGLVLDM--NGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSK--GDVVAAAAAALDLLNNVLVQAILGP 90 (932)
Q Consensus 15 ~~~~i~IG~i~~~--s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~--~~~~~a~~~a~~li~~~~v~aiiGp 90 (932)
.....+||++.|. ++.+-.....+++.++++. |+++.+...++. .++..-.+....++.+ ++++||-+
T Consensus 40 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~vdgiIi~ 111 (342)
T 1jx6_A 40 TQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKL-------NINYQLNQVFTRPNADIKQQSLSLMEALKS-KSDYLIFT 111 (342)
T ss_dssp CSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHT-------TCCEEEEEEECCTTCCHHHHHHHHHHHHHT-TCSEEEEC
T ss_pred cCCceEEEEEecCCcccHHHHHHHHHHHHHHHHc-------CCeEEEEecCCCCccCHHHHHHHHHHHHhc-CCCEEEEe
Confidence 4566899999986 4455555666766666543 355666655555 5776666666677765 89998876
Q ss_pred CChhHHHHHHHhcCCCCccEEec-ccCCCCccCCCCCceEecccCchhHHHHHHHHHHH-cC-CeEEEEEEEcCC-cCCC
Q 002352 91 EKSMQTNFIIQLGNKSQVPILSF-SATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKA-FG-WREAVPIYVDNQ-YGEE 166 (932)
Q Consensus 91 ~~s~~a~~v~~~~~~~~iP~Is~-~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~-~~-w~~v~ii~~d~~-~g~~ 166 (932)
............+...++|+|.+ ....+.......+.+..+..++...+..+++++.. +| -+++++|..... ....
T Consensus 112 ~~~~~~~~~~~~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~ 191 (342)
T 1jx6_A 112 LDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDV 191 (342)
T ss_dssp CSSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHH
T ss_pred CChHhHHHHHHHHHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhH
Confidence 54432223333344568999876 33222110011223445666777778888888866 46 999999975432 2334
Q ss_pred hHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHhCCc
Q 002352 167 MIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGL 233 (932)
Q Consensus 167 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~l~~~a~~~g~ 233 (932)
..+.+.+++++.|. +.....+....+.++-...+.++.+. ++++|+ +.+...+..+++++++.|+
T Consensus 192 R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 192 RGDTFIHQVNRDNN-FELQSAYYTKATKQSGYDAAKASLAKHPDVDFIY-ACSTDVALGAVDALAELGR 258 (342)
T ss_dssp HHHHHHHHHHHHHC-CEEEEEECCCSSHHHHHHHHHHHHHHCCCCSEEE-ESSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCC-cEEEEEecCCCCHHHHHHHHHHHHHhCCCccEEE-ECCChhHHHHHHHHHHcCC
Confidence 46778888888776 22221222222333344445554433 456555 4556678889999999997
No 122
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=97.77 E-value=0.00031 Score=74.70 Aligned_cols=208 Identities=14% Similarity=0.076 Sum_probs=127.8
Q ss_pred CCccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCCh
Q 002352 15 TTIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKS 93 (932)
Q Consensus 15 ~~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s 93 (932)
....-+||+++|... .+-.....+++-++++. |+.+. +.++..++..-.+....++. .+|++||-....
T Consensus 12 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~ 81 (303)
T 3kke_A 12 HSRSGTIGLIVPDVNNAVFADMFSGVQMAASGH-------STDVL--LGQIDAPPRGTQQLSRLVSE-GRVDGVLLQRRE 81 (303)
T ss_dssp -----CEEEEESCTTSTTHHHHHHHHHHHHHHT-------TCCEE--EEECCSTTHHHHHHHHHHHS-CSSSEEEECCCT
T ss_pred hCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC-------CCEEE--EEeCCCChHHHHHHHHHHHh-CCCcEEEEecCC
Confidence 345577999998654 55556677777776653 34444 44555555555555555555 488888754333
Q ss_pred hHHH-HHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCC--cCCChHHH
Q 002352 94 MQTN-FIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPS 170 (932)
Q Consensus 94 ~~a~-~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~ 170 (932)
.... .+..+.+ ++|+|......+. .. -.+..++..-+..+++++...|-+++++|..... ......+.
T Consensus 82 ~~~~~~~~~l~~--~iPvV~i~~~~~~----~~---~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 152 (303)
T 3kke_A 82 DFDDDMLAAVLE--GVPAVTINSRVPG----RV---GSVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEG 152 (303)
T ss_dssp TCCHHHHHHHHT--TSCEEEESCCCTT----CC---CEEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHH
T ss_pred CCcHHHHHHHhC--CCCEEEECCcCCC----CC---CEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHH
Confidence 3333 4445554 9999998654332 22 2345667777888888888889999999986432 33455788
Q ss_pred HHHHHHhCCceeeeeeecCCCCChhHHHHHHHHH-----hcCC--ceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 171 LTDALQAIDTRVPYRSVISPLATDDQIEKELYKL-----FTMQ--TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 171 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l-----~~~~--~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
+.+++++.|+.+..........+.+.-...+.++ .+.. +++|+ +++...+..+++++++.|+..|+-+-|+
T Consensus 153 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~vi 230 (303)
T 3kke_A 153 YLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVV-VASVNAAVGALSTALRLGLRVPEDLSIV 230 (303)
T ss_dssp HHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 9999999997754322222223344444556666 5443 55553 4556678899999999998755443333
No 123
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=97.74 E-value=0.00016 Score=77.20 Aligned_cols=118 Identities=17% Similarity=0.221 Sum_probs=73.6
Q ss_pred CCCHHHHHhCCCcEEEEcChhHHH----HHHhcCCCccccc-ccCCHHHHHHHhhcccCCCceeEEEecccccccccccC
Q 002352 663 ITDFQMLIKSGDNVGYRKDSFVFG----ILKQLGFDEKKLI-AYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQY 737 (932)
Q Consensus 663 i~s~~dL~~~~~~vg~~~~s~~~~----~l~~~~~~~~~~~-~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~ 737 (932)
|++++||. |+++++..|+.... ++++.+.....+. .+.+..+.+++|.+|+ +||++...++..+...+.
T Consensus 97 i~s~~dL~--Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~G~----vDa~~~~~~~~~~~~~~~ 170 (308)
T 2x26_A 97 IKTVADLK--GHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGN----VDAWAIWDPYYSAALLQG 170 (308)
T ss_dssp CCSGGGGT--TSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTS----SSEEEEETTHHHHHHHHS
T ss_pred CCCHHHcC--CCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHcCC----CCEEEecchhHHHHHhcC
Confidence 78999999 99999988776544 3455565543332 3556788999999999 999988877766655443
Q ss_pred CcceEEecc--cccccceEEEec-----CCCCChHHHHHHHHh----hhccc-hHHHHHHHhc
Q 002352 738 CSKYTLIER--TFETAGFGFAFP-----LHSPLVPEVSRAILN----VTEGN-KMKEIEDEWF 788 (932)
Q Consensus 738 ~~~l~~~~~--~~~~~~~~~~~~-----k~s~l~~~in~~il~----l~e~G-~~~~~~~~~~ 788 (932)
.++++.. .+......+++. ++..+...|++++.+ +.+++ ...++..+|+
T Consensus 171 --~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~ 231 (308)
T 2x26_A 171 --GVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTM 231 (308)
T ss_dssp --SEEEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred --CcEEEecCCCcCCcceEEEEcHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHh
Confidence 2344432 222222223332 245577777777766 34443 3555666665
No 124
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=97.73 E-value=0.00058 Score=72.29 Aligned_cols=210 Identities=14% Similarity=0.066 Sum_probs=126.3
Q ss_pred CCccEEEEEEEeCC------CccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEE
Q 002352 15 TTIPVNVGLVLDMN------GEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAIL 88 (932)
Q Consensus 15 ~~~~i~IG~i~~~s------~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aii 88 (932)
...+-+||+++|.. ..+-.....+++-++++. |+.+ .+.++..++..-.+ ..+.+...+|++||
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~-------g~~~--~~~~~~~~~~~~~~-~~~~l~~~~vdGiI 73 (295)
T 3hcw_A 4 TNQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQH-------GYGT--QTTVSNNMNDLMDE-VYKMIKQRMVDAFI 73 (295)
T ss_dssp CCCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTT-------TCEE--EECCCCSHHHHHHH-HHHHHHTTCCSEEE
T ss_pred CCCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHC-------CCEE--EEEcCCCChHHHHH-HHHHHHhCCcCEEE
Confidence 34567899999642 333344555555555432 3444 45566555544444 44444445898888
Q ss_pred ccCChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCC--cCCC
Q 002352 89 GPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEE 166 (932)
Q Consensus 89 Gp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~ 166 (932)
--..... ......+...++|+|......+... . .+..+..++..-+..+++++...|-+++++|..... ....
T Consensus 74 ~~~~~~~-~~~~~~l~~~~iPvV~i~~~~~~~~-~---~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~ 148 (295)
T 3hcw_A 74 LLYSKEN-DPIKQMLIDESMPFIVIGKPTSDID-H---QFTHIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKD 148 (295)
T ss_dssp ESCCCTT-CHHHHHHHHTTCCEEEESCCCSSGG-G---GSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHH
T ss_pred EcCcccC-hHHHHHHHhCCCCEEEECCCCcccc-C---CceEEecCcHHHHHHHHHHHHHcCCccEEEEcCCccchhHHH
Confidence 5322222 2334445567999998765332210 0 233455566777888888887789999999986533 2345
Q ss_pred hHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhc-----CCceEEEEEeChhhHHHHHHHHHhCCccccceEEE
Q 002352 167 MIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT-----MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWI 241 (932)
Q Consensus 167 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~-----~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi 241 (932)
..+.+.+++++.|+.+... . ...+.++....+.++.+ ..+++|+ +++...+..+++++++.|+..|+-+-|
T Consensus 149 R~~Gf~~al~~~g~~~~~~-~--~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~v 224 (295)
T 3hcw_A 149 RIQGFETVASQFNLDYQII-E--TSNEREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAILSVLYELNIEIPKDVMT 224 (295)
T ss_dssp HHHHHHHHHHHTTCEEEEE-E--ECSCHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHHHHHHHHTTCCTTTTEEE
T ss_pred HHHHHHHHHHHcCCCeeEE-e--ccCCHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceEE
Confidence 5788999999999876522 1 12233333344444432 2567654 566667899999999999976655444
Q ss_pred Ee
Q 002352 242 MT 243 (932)
Q Consensus 242 ~t 243 (932)
++
T Consensus 225 ig 226 (295)
T 3hcw_A 225 AT 226 (295)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 125
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=97.72 E-value=0.00077 Score=71.97 Aligned_cols=200 Identities=9% Similarity=0.036 Sum_probs=128.1
Q ss_pred cEEEEEEEeCC-CccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEc-cCChhH
Q 002352 18 PVNVGLVLDMN-GEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILG-PEKSMQ 95 (932)
Q Consensus 18 ~i~IG~i~~~s-~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiG-p~~s~~ 95 (932)
..+||+++|.. ..+-.....+++.++++. |++ +.+.++..++..-.+....++.+ ++++||- |.....
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~--~~~~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~~~~ 71 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESL-------GAK--VFVQSANGNEETQMSQIENMINR-GVDVLVIIPYNGQV 71 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHT-------SCE--EEEEECTTCHHHHHHHHHHHHHT-TCSEEEEECSSTTS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc-------CCE--EEEECCCCCHHHHHHHHHHHHHc-CCCEEEEeCCChhh
Confidence 35799999964 455566777887777764 344 44556677877777777777766 8888775 333333
Q ss_pred HHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHH-HcCCeEEEEEEEcCC--cCCChHHHHH
Q 002352 96 TNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIK-AFGWREAVPIYVDNQ--YGEEMIPSLT 172 (932)
Q Consensus 96 a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~-~~~w~~v~ii~~d~~--~g~~~~~~l~ 172 (932)
.......+...++|+|.+....+. ... ...+..++...+..+++++. ..|-+++++|..... ......+.+.
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~---~~~--~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~ 146 (313)
T 3m9w_A 72 LSNVVKEAKQEGIKVLAYDRMIND---ADI--DFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQM 146 (313)
T ss_dssp CHHHHHHHHTTTCEEEEESSCCTT---SCC--SEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCeEEEECCcCCC---CCc--eEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHH
Confidence 345555667789999998654322 111 13455677777888888886 899999999975432 2334467788
Q ss_pred HHHHhC----CceeeeeeecCCCCChhHHHHHHHHHhc---CCceEEEEEeChhhHHHHHHHHHhCCcc
Q 002352 173 DALQAI----DTRVPYRSVISPLATDDQIEKELYKLFT---MQTRVFILHMLPSLGSRIFEKANEIGLM 234 (932)
Q Consensus 173 ~~l~~~----g~~v~~~~~~~~~~~~~~~~~~l~~l~~---~~~~viil~~~~~~~~~l~~~a~~~g~~ 234 (932)
+++++. ++.+..... ....+.+.....+.++.+ .++++|+ +.+...+..+++++++.|+.
T Consensus 147 ~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 147 KVLKPYVDSGKIKVVGDQW-VDGWLPENALKIMENALTANNNKIDAVV-ASNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp HHHHHHHHTTSEEEEEEEE-CGGGCHHHHHHHHHHHHHHTTTCCCEEE-ESSHHHHHHHHHHHHTTTCT
T ss_pred HHHHhhccCCCEEEEeecc-CCCcCHHHHHHHHHHHHHhCCCCeeEEE-ECCCchHHHHHHHHHHcCCC
Confidence 888876 566654322 112233344444555443 3455543 45566788999999999986
No 126
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=97.70 E-value=0.00048 Score=74.74 Aligned_cols=211 Identities=9% Similarity=-0.028 Sum_probs=130.8
Q ss_pred CCccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCCh
Q 002352 15 TTIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKS 93 (932)
Q Consensus 15 ~~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s 93 (932)
....-+||+++|... .+-.....+++-++++ .|+.+ .+.++..++..-.+....++.+ ++++||-....
T Consensus 65 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-------~g~~~--~~~~~~~~~~~~~~~i~~l~~~-~vdGiIi~~~~ 134 (344)
T 3kjx_A 65 SNRVNLVAVIIPSLSNMVFPEVLTGINQVLED-------TELQP--VVGVTDYLPEKEEKVLYEMLSW-RPSGVIIAGLE 134 (344)
T ss_dssp TSCCSEEEEEESCSSSSSHHHHHHHHHHHHTS-------SSSEE--EEEECTTCHHHHHHHHHHHHTT-CCSEEEEECSC
T ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHH-------CCCEE--EEEeCCCCHHHHHHHHHHHHhC-CCCEEEEECCC
Confidence 344578999998654 4444455555554432 24555 4556666776666666666655 88877743222
Q ss_pred hHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcC---CcCCChHHH
Q 002352 94 MQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDN---QYGEEMIPS 170 (932)
Q Consensus 94 ~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~---~~g~~~~~~ 170 (932)
... .....+...++|+|....... .+....+..++..-+..+++++...|-+++++|.... .........
T Consensus 135 ~~~-~~~~~l~~~~iPvV~i~~~~~------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~G 207 (344)
T 3kjx_A 135 HSE-AARAMLDAAGIPVVEIMDSDG------KPVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKRFEG 207 (344)
T ss_dssp CCH-HHHHHHHHCSSCEEEEEECSS------CCSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHH
T ss_pred CCH-HHHHHHHhCCCCEEEEeCCCC------CCCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccHHHHHHH
Confidence 222 344455667999998742111 1223345667777788888888888999999998653 223445678
Q ss_pred HHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEe
Q 002352 171 LTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMT 243 (932)
Q Consensus 171 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t 243 (932)
|.+++++.|+.+.....+....+.+.-...+.++.+ .++++|+ +++...+..+++++++.|+..|+-+-|++
T Consensus 208 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~disvvg 281 (344)
T 3kjx_A 208 FTEVLGKNGVEIEDREFYSGGSALAKGREMTQAMLERSPDLDFLY-YSNDMIAAGGLLYLLEQGIDIPGQIGLAG 281 (344)
T ss_dssp HHHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred HHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 899999999876544333222333333344444443 2566655 55667788999999999997665555553
No 127
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=97.69 E-value=0.00088 Score=70.02 Aligned_cols=205 Identities=12% Similarity=0.034 Sum_probs=125.5
Q ss_pred CCccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCCh
Q 002352 15 TTIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKS 93 (932)
Q Consensus 15 ~~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s 93 (932)
....-+||+++|... .+-.....+++-++++. |+++ .+.++..++..-.+....++.+ ++++||-....
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-------g~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~~~ 73 (276)
T 3jy6_A 4 TQSSKLIAVIVANIDDYFSTELFKGISSILESR-------GYIG--VLFDANADIEREKTLLRAIGSR-GFDGLILQSFS 73 (276)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTT-------TCEE--EEEECTTCHHHHHHHHHHHHTT-TCSEEEEESSC
T ss_pred CCCCcEEEEEeCCCCchHHHHHHHHHHHHHHHC-------CCEE--EEEeCCCCHHHHHHHHHHHHhC-CCCEEEEecCC
Confidence 345678999998654 44445556666555542 3444 4456666766655555566554 88888754433
Q ss_pred hHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCC-c--CCChHHH
Q 002352 94 MQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQ-Y--GEEMIPS 170 (932)
Q Consensus 94 ~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~-~--g~~~~~~ 170 (932)
. ......+...++|+|......+ ... +-.+..++..-+..+++++...|-++++++..... . .......
T Consensus 74 ~--~~~~~~l~~~~iPvV~i~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~g 145 (276)
T 3jy6_A 74 N--PQTVQEILHQQMPVVSVDREMD---ACP---WPQVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRG 145 (276)
T ss_dssp C--HHHHHHHHTTSSCEEEESCCCT---TCS---SCEEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHH
T ss_pred c--HHHHHHHHHCCCCEEEEecccC---CCC---CCEEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHH
Confidence 3 4455556678999999865322 111 23455677778888999998889999999987543 2 2344566
Q ss_pred HHHHHHhCCceeeeeeecCCC-CCh-hHHHHHHHHHhc-CCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEe
Q 002352 171 LTDALQAIDTRVPYRSVISPL-ATD-DQIEKELYKLFT-MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMT 243 (932)
Q Consensus 171 l~~~l~~~g~~v~~~~~~~~~-~~~-~~~~~~l~~l~~-~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t 243 (932)
+.+++++.+. +. +... ... +......+.|.. .++++|+ +++...+..+++++++.|+..|+-+-|++
T Consensus 146 f~~~l~~~~~-~~----~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vig 215 (276)
T 3jy6_A 146 ILAAAQDVDV-LE----VSESSYNHSEVHQRLTQLITQNDQKTVAF-ALKERWLLEFFPNLIISGLIDNQTVTATG 215 (276)
T ss_dssp HHTTCSEEEE-EE----ECSSSCCHHHHHHHHHHHHHSSSSCEEEE-ESSHHHHHHHSHHHHHSSSCCSSSEEEEE
T ss_pred HHHHHHhCCc-EE----EeccccCCcHHHHHHHHHHhcCCCCcEEE-EeCcHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 7777766643 11 1111 122 233333444432 3455544 46667788999999999997666555554
No 128
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=97.69 E-value=0.00027 Score=74.84 Aligned_cols=208 Identities=9% Similarity=0.060 Sum_probs=130.0
Q ss_pred EEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChh---
Q 002352 19 VNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSM--- 94 (932)
Q Consensus 19 i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~--- 94 (932)
-+||+++|... .+-.....+++-++++. |+.+ .+.++..++..-.+....++.+ ++++||-.....
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~~~~~~~ 85 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQ-------GYSM--LLTSTNNNPDNERRGLENLLSQ-HIDGLIVEPTKSALQ 85 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHT-------TCEE--EEEECTTCHHHHHHHHHHHHHT-CCSEEEECCSSTTSC
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHC-------CCEE--EEEeCCCChHHHHHHHHHHHHC-CCCEEEEeccccccc
Confidence 68999999755 45555667777666653 3444 4556666777766667777765 888887533221
Q ss_pred -HHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCC-cCCChHHHHH
Q 002352 95 -QTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQ-YGEEMIPSLT 172 (932)
Q Consensus 95 -~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~-~g~~~~~~l~ 172 (932)
........+...++|+|......+. . .+..+..++..-+..+++++...|-++++++..... ......+.+.
T Consensus 86 ~~~~~~~~~~~~~~iPvV~~~~~~~~---~---~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~ 159 (298)
T 3tb6_A 86 TPNIGYYLNLEKNGIPFAMINASYAE---L---AAPSFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFI 159 (298)
T ss_dssp CTTHHHHHHHHHTTCCEEEESSCCTT---C---SSCEEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhcCCCEEEEecCcCC---C---CCCEEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHH
Confidence 2334445556679999998654322 1 122355677777888999998889999999986433 2344577888
Q ss_pred HHHHhCCceeeeeeecCCCCCh--hHHHHHHHHHhcCC----ceEEEEEeChhhHHHHHHHHHhCCccccceEEEEe
Q 002352 173 DALQAIDTRVPYRSVISPLATD--DQIEKELYKLFTMQ----TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMT 243 (932)
Q Consensus 173 ~~l~~~g~~v~~~~~~~~~~~~--~~~~~~l~~l~~~~----~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t 243 (932)
+++++.|+.+.....+...... ......+.++.+.. +++|+ +.+...+..+++++++.|+..|+-+-|++
T Consensus 160 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg 235 (298)
T 3tb6_A 160 QAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAIL-CYNDEIALKVIDMLREMDLKVPEDMSIVG 235 (298)
T ss_dssp HHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred HHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEE-EeCcHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 9999998765432221111111 11133344443322 56654 44666788999999999987665554543
No 129
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=97.68 E-value=0.00019 Score=75.71 Aligned_cols=209 Identities=9% Similarity=0.025 Sum_probs=128.8
Q ss_pred CCccEEEEEEEe-C-CCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCC
Q 002352 15 TTIPVNVGLVLD-M-NGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEK 92 (932)
Q Consensus 15 ~~~~i~IG~i~~-~-s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~ 92 (932)
..+..+||+++| . +..+-.....+++-++++. |+.+.+...+...+. - ....+.+...++++||-...
T Consensus 8 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~~~~~~~~~~~--~-~~~~~~l~~~~vdgiIi~~~ 77 (289)
T 3g85_A 8 SQSKPTIALYWSSDISVNIISRFLRGLQSKLAKQ-------NYNYNVVICPYKTDC--L-HLEKGISKENSFDAAIIANI 77 (289)
T ss_dssp ---CCEEEEEEETTSCGGGHHHHHHHHHHHHHHT-------TTCSEEEEEEECTTC--G-GGCGGGSTTTCCSEEEESSC
T ss_pred cCCCceEEEEeccccchHHHHHHHHHHHHHHHHc-------CCeEEEEecCCCchh--H-HHHHHHHhccCCCEEEEecC
Confidence 455678999999 2 3455556677777776653 244444332221111 1 12334444458888886444
Q ss_pred hhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCC--cCCChHHH
Q 002352 93 SMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPS 170 (932)
Q Consensus 93 s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~ 170 (932)
......+... ...++|+|......+ .+-.+..++...+..+++++...|-++++++..+.. ......+.
T Consensus 78 ~~~~~~~~~~-~~~~iPvV~~~~~~~--------~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g 148 (289)
T 3g85_A 78 SNYDLEYLNK-ASLTLPIILFNRLSN--------KYSSVNVDNYKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNKG 148 (289)
T ss_dssp CHHHHHHHHH-CCCSSCEEEESCCCS--------SSEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHH
T ss_pred CcccHHHHHh-ccCCCCEEEECCCCC--------CCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHH
Confidence 4333344443 368999999875322 234566677778888999998889999999986533 23455788
Q ss_pred HHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCC--ceEEEEEeChhhHHHHHHHHHhCCccccceEEEEe
Q 002352 171 LTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ--TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMT 243 (932)
Q Consensus 171 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t 243 (932)
+.+++++.|+.+.....+....+.++....+.++.+.. +++|+ +.+...+..+++++++.|+..|+-+-|++
T Consensus 149 f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vig 222 (289)
T 3g85_A 149 FIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALF-CNSDSIALGVISVLNKRQISIPDDIEIVA 222 (289)
T ss_dssp HHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEE-EcCCHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 99999999977543222222234445555666666543 55554 55667788999999999987665544443
No 130
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=97.65 E-value=0.00015 Score=79.07 Aligned_cols=63 Identities=13% Similarity=0.181 Sum_probs=46.5
Q ss_pred CCCHHHHHhCCCcEEEEcChhHH----HHHHhcCCCcccccccC-CHHHHHHHhhcccCCCceeEEEecccccc
Q 002352 663 ITDFQMLIKSGDNVGYRKDSFVF----GILKQLGFDEKKLIAYS-SPEECDELFQKGSAGGGIAAAFDEIPYTK 731 (932)
Q Consensus 663 i~s~~dL~~~~~~vg~~~~s~~~----~~l~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~~g~~a~~~~~~~~~ 731 (932)
|++++||. |++||+..|+... .+|++.+.+...+..+. +..+...+|.+|+ +||++...+...
T Consensus 111 i~s~~DLk--Gk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G~----vDa~~~~~~~~~ 178 (348)
T 3uif_A 111 AKSIKDLK--GKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNVNPQVGAAALASGT----VDGFFSLFDSYI 178 (348)
T ss_dssp CCSGGGGT--TSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECCCHHHHHHHHHHTS----SSEEEESTTHHH
T ss_pred CCCHHHcC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEECCHHHHHHHHHcCC----CCEEEechHHHH
Confidence 89999998 9999998887653 44555565544333332 6678899999999 999988766553
No 131
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=97.64 E-value=0.0004 Score=73.46 Aligned_cols=208 Identities=13% Similarity=0.134 Sum_probs=126.9
Q ss_pred CccEEEEEEEeC-----CCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcc
Q 002352 16 TIPVNVGLVLDM-----NGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGP 90 (932)
Q Consensus 16 ~~~i~IG~i~~~-----s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp 90 (932)
..+-+||+++|. +..+-.....+++-++++. |+.+.+...+.... .....+++...+|++||-.
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~~~~~~~~~~----~~~~~~~l~~~~vdGiIi~ 72 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKR-------GLDLLLIPDEPGEK----YQSLIHLVETRRVDALIVA 72 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHT-------TCEEEEEEECTTCC----CHHHHHHHHHTCCSEEEEC
T ss_pred CccceEEEEecCCCccccChhHHHHHHHHHHHHHHC-------CCEEEEEeCCChhh----HHHHHHHHHcCCCCEEEEe
Confidence 345689999983 3344445566666665543 46666655543211 2234445545588887753
Q ss_pred CChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCC--cCCChH
Q 002352 91 EKSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEEMI 168 (932)
Q Consensus 91 ~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~ 168 (932)
...... .....+...++|+|.+....+ . +.+-.+..++..-+..+++++...|-+++++|..... ......
T Consensus 73 ~~~~~~-~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~ 145 (294)
T 3qk7_A 73 HTQPED-FRLQYLQKQNFPFLALGRSHL---P---KPYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRL 145 (294)
T ss_dssp SCCSSC-HHHHHHHHTTCCEEEESCCCC---S---SCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHH
T ss_pred CCCCCh-HHHHHHHhCCCCEEEECCCCC---C---CCCCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHH
Confidence 322222 334455667999999765321 1 2233456677777888889988889999999987543 234457
Q ss_pred HHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 169 PSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 169 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
+.+.+++++.|+.+.....+....+.+.-...+.++.+. .+++|+ +++...+..+++++++.|+..|+-+-|+
T Consensus 146 ~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~vi 220 (294)
T 3qk7_A 146 QGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAII-TDCNMLGDGVASALDKAGLLGGEGISLI 220 (294)
T ss_dssp HHHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCSSTTSCEEE
T ss_pred HHHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 888999999987653221111123334444555555544 455554 4566778899999999999766544444
No 132
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=97.60 E-value=0.0011 Score=72.14 Aligned_cols=208 Identities=12% Similarity=0.019 Sum_probs=122.0
Q ss_pred CccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChh
Q 002352 16 TIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSM 94 (932)
Q Consensus 16 ~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~ 94 (932)
....+||++.|... .+......+++.++++. |+++. +.++..++....+....++.+ +|++||-.....
T Consensus 64 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~~ 133 (348)
T 3bil_A 64 SRSNTIGVIVPSLINHYFAAMVTEIQSTASKA-------GLATI--ITNSNEDATTMSGSLEFLTSH-GVDGIICVPNEE 133 (348)
T ss_dssp ----CEEEEESCSSSHHHHHHHHHHHHHHHHT-------TCCEE--EEECTTCHHHHHHHHHHHHHT-TCSCEEECCCGG
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc-------CCEEE--EEeCCCCHHHHHHHHHHHHhC-CCCEEEEeCCCC
Confidence 34567999998543 44445666666666542 34444 345556666555555556554 888887643332
Q ss_pred HHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCC--cCCChHHHHH
Q 002352 95 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLT 172 (932)
Q Consensus 95 ~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~ 172 (932)
.. .....+...++|+|.+....+. .+.+..+..++..-+..+++++...|.+++++|..... ........+.
T Consensus 134 ~~-~~~~~l~~~~iPvV~i~~~~~~-----~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 207 (348)
T 3bil_A 134 CA-NQLEDLQKQGMPVVLVDRELPG-----DSTIPTATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTGRERLEDFK 207 (348)
T ss_dssp GH-HHHHHHHHC-CCEEEESSCCSC-----C-CCCEEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHH
T ss_pred Ch-HHHHHHHhCCCCEEEEcccCCC-----CCCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHH
Confidence 22 2333444579999987653221 01222344566666788888888889999999986432 2344577888
Q ss_pred HHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 173 DALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 173 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
+++++.|+..... +....+.++-...+.++.+..+ ..|++.+...+..+++++++.|+..|+-+-|+
T Consensus 208 ~al~~~g~~~~~v--~~~~~~~~~~~~~~~~ll~~~~-~ai~~~nD~~A~g~~~al~~~G~~vP~disvv 274 (348)
T 3bil_A 208 AACANSKIGEQLV--FLGGYEQSVGFEGATKLLDQGA-KTLFAGDSMMTIGVIEACHKAGLVIGKDVSVI 274 (348)
T ss_dssp HHHHHTTCCCCEE--ECCCSSHHHHHHHHHHHHHTTC-SEEEESSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHcCcCccEE--EcCCCCHHHHHHHHHHHHcCCC-CEEEEcChHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 9999988732211 1112233333445555544432 24445666778899999999998765544444
No 133
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=97.60 E-value=7.7e-05 Score=81.04 Aligned_cols=120 Identities=13% Similarity=0.070 Sum_probs=74.8
Q ss_pred CCCHHHH-HhCCCcEEEEcChhHH-----HHHHhcCCCcc--cccccCCHHHHHHHhhcccCCCceeEEEeccccccccc
Q 002352 663 ITDFQML-IKSGDNVGYRKDSFVF-----GILKQLGFDEK--KLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFI 734 (932)
Q Consensus 663 i~s~~dL-~~~~~~vg~~~~s~~~-----~~l~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~ 734 (932)
|++++|| . |++||+..++... .+|++.+.+.. +++.+ +..+...+|.+|+ +||++...++.....
T Consensus 145 I~s~~DL~k--Gk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~G~----vDa~~~~~p~~~~~~ 217 (341)
T 3un6_A 145 LNEFNNNGD--DYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSEHR----ITGYSVAEPFGALGE 217 (341)
T ss_dssp GGGCCSSSS--CEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHTTS----CSEEEEETTHHHHHH
T ss_pred CCCHHHhCC--CCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHcCC----CCEEEecCCHHHHHH
Confidence 7889999 7 9999998754332 35555565432 33344 5678889999999 999998887766555
Q ss_pred ccCCcceEEecccc-ccc-ceEEEecCC----CC-----ChHHHHHHHHhhhccchHHHHHHHhcc
Q 002352 735 GQYCSKYTLIERTF-ETA-GFGFAFPLH----SP-----LVPEVSRAILNVTEGNKMKEIEDEWFK 789 (932)
Q Consensus 735 ~~~~~~l~~~~~~~-~~~-~~~~~~~k~----s~-----l~~~in~~il~l~e~G~~~~~~~~~~~ 789 (932)
.+...+.......+ ... ...++++++ .| +...+++++..+.+++.-.++..+|++
T Consensus 218 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 283 (341)
T 3un6_A 218 KLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFK 283 (341)
T ss_dssp HSSCCEEEEEGGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSS
T ss_pred hcCCeEEEEeccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhC
Confidence 54432222222222 222 245666553 23 666677777777777654466667764
No 134
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=97.54 E-value=0.0026 Score=65.41 Aligned_cols=199 Identities=11% Similarity=-0.006 Sum_probs=123.2
Q ss_pred EEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChhHHH
Q 002352 19 VNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSMQTN 97 (932)
Q Consensus 19 i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~~a~ 97 (932)
-+||++.|... .+-.....+++-++++. |+++. +.++..++..-.+....++. .++++||-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~ 72 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQ-------GYDPI--MMESQFSPQLVAEHLGVLKR-RNIDGVVLFGFTGITE 72 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHH-------TCEEE--EEECTTCHHHHHHHHHHHHT-TTCCEEEEECCTTCCT
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHc-------CCEEE--EEeCCCcHHHHHHHHHHHHh-cCCCEEEEecCccccH
Confidence 36999998543 44445666777666654 34444 44555666555555555554 4888877532221111
Q ss_pred HHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEc--C-CcCCChHHHHHHH
Q 002352 98 FIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVD--N-QYGEEMIPSLTDA 174 (932)
Q Consensus 98 ~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d--~-~~g~~~~~~l~~~ 174 (932)
......++|+|...... +.+..+..++...+..+++++...|.++++++... + .......+.+.++
T Consensus 73 ---~~l~~~~~pvV~~~~~~--------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~a 141 (255)
T 1byk_A 73 ---EMLAHWQSSLVLLARDA--------KGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAF 141 (255)
T ss_dssp ---TTSGGGSSSEEEESSCC--------SSCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHH
T ss_pred ---HHHHhcCCCEEEEcccc--------CCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHH
Confidence 23345689999875421 12345566777778888899888899999999854 2 2344567889999
Q ss_pred HHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEec
Q 002352 175 LQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTE 244 (932)
Q Consensus 175 l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~ 244 (932)
+++.|+.+.. +....+..+-...+.++.+.++++|+ +++...+..+++++++.|+ .+...+.-|
T Consensus 142 l~~~g~~~~~---~~~~~~~~~~~~~~~~~l~~~~~ai~-~~~d~~A~g~~~al~~~g~--~di~vig~d 205 (255)
T 1byk_A 142 CKAHKLHPVA---ALPGLAMKQGYENVAKVITPETTALL-CATDTLALGASKYLQEQRI--DTLQLASVG 205 (255)
T ss_dssp HHHTTCCCEE---ECCCSCHHHHHHHSGGGCCTTCCEEE-ESSHHHHHHHHHHHHHTTC--CSCEEEEEC
T ss_pred HHHcCCCcce---eecCCccchHHHHHHHHhcCCCCEEE-EeChHHHHHHHHHHHHcCC--CcEEEEEeC
Confidence 9999876432 22222333344555565555677655 4566678899999999997 444444443
No 135
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=97.53 E-value=0.0018 Score=70.09 Aligned_cols=209 Identities=12% Similarity=0.014 Sum_probs=128.7
Q ss_pred CccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChh
Q 002352 16 TIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSM 94 (932)
Q Consensus 16 ~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~ 94 (932)
...-+||++.|... .+-.....+++-++++. |+.+ .+.++..++..-.+....++.+ +|++||-.....
T Consensus 60 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdGiIi~~~~~ 129 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVFLETLTGIETVLDAA-------GYQM--LIGNSHYDAGQELQLLRAYLQH-RPDGVLITGLSH 129 (339)
T ss_dssp ---CEEEEEESCSTTCTTHHHHHHHHHHHHHT-------TCEE--EEEECTTCHHHHHHHHHHHHTT-CCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHC-------CCEE--EEEeCCCChHHHHHHHHHHHcC-CCCEEEEeCCCC
Confidence 34567999998654 45556677777776653 3444 4566667776666666666655 888876422221
Q ss_pred HHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcC-CcCCChHHHHHH
Q 002352 95 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDN-QYGEEMIPSLTD 173 (932)
Q Consensus 95 ~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~-~~g~~~~~~l~~ 173 (932)
.. .....+...++|+|......+ .+.. .+..++..-+..+++++...|.+++++|.... .......+.+.+
T Consensus 130 ~~-~~~~~l~~~~iPvV~~~~~~~------~~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~ 201 (339)
T 3h5o_A 130 AE-PFERILSQHALPVVYMMDLAD------DGRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGYRA 201 (339)
T ss_dssp CT-THHHHHHHTTCCEEEEESCCS------SSCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHHH
T ss_pred CH-HHHHHHhcCCCCEEEEeecCC------CCCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHHHH
Confidence 11 334445567999998753211 1222 55667777788888888888999999998753 223445677889
Q ss_pred HHHhCCceeee-eeecCCCCChhHHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHhCCccccceEEEEe
Q 002352 174 ALQAIDTRVPY-RSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMT 243 (932)
Q Consensus 174 ~l~~~g~~v~~-~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t 243 (932)
++++.|+.... ........+.+.-...+.++.+. .+++|+ +++...+..+++++++.|+..|+-+-|++
T Consensus 202 al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disvvg 273 (339)
T 3h5o_A 202 ALDAADCRDAGLEWLDPQPSSMQMGADMLDRALAERPDCDALF-CCNDDLAIGALARSQQLGIAVPERLAIAG 273 (339)
T ss_dssp HHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred HHHHCCCCCCChheEecCCCCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCCEEEEE
Confidence 99998873211 11112222333334445554433 566655 46667788999999999997665554443
No 136
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=97.48 E-value=0.0011 Score=69.42 Aligned_cols=200 Identities=12% Similarity=0.047 Sum_probs=128.9
Q ss_pred CCccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCCh
Q 002352 15 TTIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKS 93 (932)
Q Consensus 15 ~~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s 93 (932)
...+-+||+++|... .+-.....+++-++++. |+.+ +.+.++..++..-.+....++.+ ++++||-..
T Consensus 7 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~-~~~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~-- 75 (277)
T 3hs3_A 7 QKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKE-------GYTA-LISFSTNSDVKKYQNAIINFENN-NVDGIITSA-- 75 (277)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHT-------TCEE-EEEECSSCCHHHHHHHHHHHHHT-TCSEEEEEC--
T ss_pred cCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHC-------CCCE-EEEEeCCCChHHHHHHHHHHHhC-CCCEEEEcc--
Confidence 345678999998744 44445666666666553 3440 44567777776666666666655 888887533
Q ss_pred hHHHHHHHhcCCCCccEEecccC-CCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcC--CcCCChHHH
Q 002352 94 MQTNFIIQLGNKSQVPILSFSAT-SPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDN--QYGEEMIPS 170 (932)
Q Consensus 94 ~~a~~v~~~~~~~~iP~Is~~a~-~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~ 170 (932)
.....+...++|+|..... .+ .+.+ .+..++..-+..+++++. .|-++++++.... .......+.
T Consensus 76 ----~~~~~~~~~~iPvV~~~~~~~~------~~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~G 143 (277)
T 3hs3_A 76 ----FTIPPNFHLNTPLVMYDSANIN------DDIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEA 143 (277)
T ss_dssp ----CCCCTTCCCSSCEEEESCCCCC------SSSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHH
T ss_pred ----hHHHHHHhCCCCEEEEcccccC------CCCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHH
Confidence 1223356679999997653 22 1234 666777777888888888 9999999998643 233455788
Q ss_pred HHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHhCCccccceEEEEe
Q 002352 171 LTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMT 243 (932)
Q Consensus 171 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t 243 (932)
+.+++++.|+.+... ... ...+ ...+.++.+. ++++|+ +.+...+..+++++++.|+..|+-+-|++
T Consensus 144 f~~~l~~~g~~~~~~-~~~-~~~~---~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vig 212 (277)
T 3hs3_A 144 MTAEASKLKIDYLLE-ETP-ENNP---YISAQSALNKSNQFDAII-TVNDLYAAEIIKEAKRRNLKIPDDFQLVG 212 (277)
T ss_dssp HHHHHHHTTCEEEEE-ECC-SSCH---HHHHHHHHHTGGGCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred HHHHHHHCCCCCCCC-Ccc-CCch---HHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 899999999887654 322 2122 3444554443 455554 45566788999999999997665544443
No 137
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=97.47 E-value=0.003 Score=68.74 Aligned_cols=210 Identities=11% Similarity=0.052 Sum_probs=128.2
Q ss_pred CccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChh
Q 002352 16 TIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSM 94 (932)
Q Consensus 16 ~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~ 94 (932)
...-+||+++|... .+-.....+++-++++. |+.+ .+.++..++..-.+....++.+ ++++||-.....
T Consensus 68 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdGiI~~~~~~ 137 (355)
T 3e3m_A 68 KRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQG-------GLQL--LLGYTAYSPEREEQLVETMLRR-RPEAMVLSYDGH 137 (355)
T ss_dssp ---CEEEEEESCSBCHHHHHHHHHHHHHHHHT-------TCEE--EEEECTTCHHHHHHHHHHHHHT-CCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHC-------CCEE--EEEeCCCChHHHHHHHHHHHhC-CCCEEEEeCCCC
Confidence 34567999998654 33334555666555542 3444 4456666776666666666655 888777432222
Q ss_pred HHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCc---CCChHHHH
Q 002352 95 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQY---GEEMIPSL 171 (932)
Q Consensus 95 ~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~---g~~~~~~l 171 (932)
. ......+...++|+|...... . .+....+..++..-+..+++++...|-+++++|...... .....+.+
T Consensus 138 ~-~~~~~~l~~~~iPvV~i~~~~---~---~~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf 210 (355)
T 3e3m_A 138 T-EQTIRLLQRASIPIVEIWEKP---A---HPIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGF 210 (355)
T ss_dssp C-HHHHHHHHHCCSCEEEESSCC---S---SCSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHH
T ss_pred C-HHHHHHHHhCCCCEEEECCcc---C---CCCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHH
Confidence 2 233445566799999874221 1 122335566777778888888888899999999875432 34567889
Q ss_pred HHHHHhCCceeeeeeec-CCCCChhHHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEe
Q 002352 172 TDALQAIDTRVPYRSVI-SPLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMT 243 (932)
Q Consensus 172 ~~~l~~~g~~v~~~~~~-~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t 243 (932)
.+++++.|+.+.....+ ....+.++-...+.++.+ ..+++|+ +++...+..+++++++.|+..|+-+-|++
T Consensus 211 ~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disvig 284 (355)
T 3e3m_A 211 KRAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIF-CVSDMPAFGLLSRLKSIGVAVPEQVSVVG 284 (355)
T ss_dssp HHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTCEEEC
T ss_pred HHHHHHCCcCCCccEEEecCCCCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 99999999875422222 112233333344444443 3566654 46667788999999999987665554443
No 138
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=97.45 E-value=0.00075 Score=70.57 Aligned_cols=202 Identities=10% Similarity=0.022 Sum_probs=117.7
Q ss_pred CccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChh
Q 002352 16 TIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSM 94 (932)
Q Consensus 16 ~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~ 94 (932)
...-+||+++|... .+-.....+++-++++. |+.+ .+.++..++..-......++.+ ++++||-...+
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-------g~~~--~~~~~~~~~~~~~~~~~~l~~~-~~dgiIi~~~~- 74 (277)
T 3e61_A 6 RKSKLIGLLLPDMSNPFFTLIARGVEDVALAH-------GYQV--LIGNSDNDIKKAQGYLATFVSH-NCTGMISTAFN- 74 (277)
T ss_dssp ----CEEEEESCTTSHHHHHHHHHHHHHHHHT-------TCCE--EEEECTTCHHHHHHHHHHHHHT-TCSEEEECGGG-
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC-------CCEE--EEEeCCCCHHHHHHHHHHHHhC-CCCEEEEecCC-
Confidence 44567999998644 44455666666666553 3444 3456666776666666666655 88888763322
Q ss_pred HHHHHHH-hcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcC--CcCCChHHHH
Q 002352 95 QTNFIIQ-LGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDN--QYGEEMIPSL 171 (932)
Q Consensus 95 ~a~~v~~-~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l 171 (932)
..... .+...++|+|.+....+. . . .+..++...+..+++++...|-++++++.... .........+
T Consensus 75 --~~~~~~~l~~~~iPvV~~~~~~~~---~---~--~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf 144 (277)
T 3e61_A 75 --ENIIENTLTDHHIPFVFIDRINNE---H---N--GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGI 144 (277)
T ss_dssp --HHHHHHHHHHC-CCEEEGGGCC-----------------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHH
T ss_pred --hHHHHHHHHcCCCCEEEEeccCCC---C---C--eEEechHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHH
Confidence 22233 555679999998754321 1 1 55667777788889999888999999998543 2334557888
Q ss_pred HHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEe
Q 002352 172 TDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMT 243 (932)
Q Consensus 172 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t 243 (932)
.+++++.|+.+.. ... ...+.++....+.+ ..++++|+ +.+...+..+++++++.|+..|+-+-|++
T Consensus 145 ~~~l~~~~~~~~~-~~~-~~~~~~~~~~~l~~--~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vig 211 (277)
T 3e61_A 145 KYILDQQRIDYKM-LEA-TLLDNDKKFIDLIK--ELSIDSII-CSNDLLAINVLGIVQRYHFKVPAEIQIIG 211 (277)
T ss_dssp HHHHHC---CEEE-EEG-GGGGSHHHHHHHHH--HHTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred HHHHHHcCCCccc-eec-CCCCHHHHHHHhhc--CCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 8999999877654 221 11111222222221 24566654 45667788899999999997665555554
No 139
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=97.44 E-value=0.0053 Score=63.78 Aligned_cols=205 Identities=10% Similarity=0.017 Sum_probs=119.8
Q ss_pred EEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEc-cCChhHHH
Q 002352 20 NVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILG-PEKSMQTN 97 (932)
Q Consensus 20 ~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiG-p~~s~~a~ 97 (932)
+||++.|... .+-.....+++.++++. |+++. +.++..++..-.+....++. .+|++||- |.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~-------g~~~~--~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~ 72 (271)
T 2dri_A 3 TIALVVSTLNNPFFVSLKDGAQKEADKL-------GYNLV--VLDSQNNPAKELANVQDLTV-RGTKILLINPTDSDAVG 72 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH-------TCEEE--EEECTTCHHHHHHHHHHHTT-TTEEEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHc-------CcEEE--EeCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChHHHH
Confidence 5899987543 44445666666666654 34443 45566676555555555555 48998774 33333222
Q ss_pred HHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHc--CCeEEEEEEEcCC--cCCChHHHHHH
Q 002352 98 FIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAF--GWREAVPIYVDNQ--YGEEMIPSLTD 173 (932)
Q Consensus 98 ~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~--~w~~v~ii~~d~~--~g~~~~~~l~~ 173 (932)
.....+...++|+|.+....+ .. +....+..++..-+..+++++... |-+++++|..... ......+.+.+
T Consensus 73 ~~~~~~~~~~iPvV~i~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (271)
T 2dri_A 73 NAVKMANQANIPVITLDRQAT---KG--EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 147 (271)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEecCCCC---CC--ceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHH
Confidence 333444557999999764322 11 111234456666677777887554 5689999985422 22345677889
Q ss_pred HHHhCCceeeeeeecCCCCChhHHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHhCCccccceEEEEec
Q 002352 174 ALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTE 244 (932)
Q Consensus 174 ~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~ 244 (932)
++++.|+.+..... ...+.+.-...+.++.+. .+++ |++.+...+..+++++++.|+ .+...+.-|
T Consensus 148 al~~~g~~~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~a-i~~~nD~~A~g~~~al~~~g~--~dv~vvGfD 215 (271)
T 2dri_A 148 AVAAHKFNVLASQP--ADFDRIKGLNVMQNLLTAHPDVQA-VFAQNDEMALGALRALQTAGK--SDVMVVGFD 215 (271)
T ss_dssp HHHHHTCEEEEEEE--CTTCHHHHHHHHHHHHHHCTTCCE-EEESSHHHHHHHHHHHHHHTC--CSCEEEEEE
T ss_pred HHhcCCCEEEEecC--CCCCHHHHHHHHHHHHHhCCCccE-EEECCCcHHHHHHHHHHHcCC--CCcEEEEec
Confidence 99998987643221 122333333444444432 3454 445566678899999999997 344444443
No 140
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=97.43 E-value=0.00033 Score=74.43 Aligned_cols=210 Identities=10% Similarity=0.028 Sum_probs=128.4
Q ss_pred CCccEEEEEEEeCCC-ccch-hHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCC
Q 002352 15 TTIPVNVGLVLDMNG-EDGK-IALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEK 92 (932)
Q Consensus 15 ~~~~i~IG~i~~~s~-~~g~-~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~ 92 (932)
....-+||+++|... .+-. ....+++-++++. |+.+ .+.++..++..-.+....++.+ +|++||-...
T Consensus 10 ~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-------g~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdGiIi~~~ 79 (301)
T 3miz_A 10 SSRSNTFGIITDYVSTTPYSVDIVRGIQDWANAN-------GKTI--LIANTGGSSEREVEIWKMFQSH-RIDGVLYVTM 79 (301)
T ss_dssp --CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHT-------TCEE--EEEECTTCHHHHHHHHHHHHHT-TCSEEEEEEE
T ss_pred hCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHC-------CCEE--EEEeCCCChHHHHHHHHHHHhC-CCCEEEEecC
Confidence 345678999998765 3333 6677777776654 3444 4555666776666656666655 8888774222
Q ss_pred hhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCc--CCChHHH
Q 002352 93 SMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQY--GEEMIPS 170 (932)
Q Consensus 93 s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~--g~~~~~~ 170 (932)
.... ....+...++|+|......+. . +.+..+..++...+..+++++...|-+++++|...... .....+.
T Consensus 80 ~~~~--~~~~~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 152 (301)
T 3miz_A 80 YRRI--VDPESGDVSIPTVMINCRPQT---R--ELLPSIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDA 152 (301)
T ss_dssp EEEE--CCCCCTTCCCCEEEEEEECSS---T--TSSCEEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHH
T ss_pred CccH--HHHHHHhCCCCEEEECCCCCC---C--CCCCEEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHH
Confidence 2211 445566789999998653321 1 02334556777778888899988899999999864332 3455788
Q ss_pred HHHHHHhCCceeeeeeecCC---CCChhHHH--HHHHHHhcC--CceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 171 LTDALQAIDTRVPYRSVISP---LATDDQIE--KELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 171 l~~~l~~~g~~v~~~~~~~~---~~~~~~~~--~~l~~l~~~--~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
+.+++++.|+.+.....+.. ..+.+.-. ..+.++.+. .+++|+ +++...+..+++++++.|+..|+-+-|+
T Consensus 153 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vi 230 (301)
T 3miz_A 153 FRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDRPTAIM-SGNDEMAIQIYIAAMALGLRIPQDVSIV 230 (301)
T ss_dssp HHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTCCSEEE-ESSHHHHHHHHHHHHTTTCCHHHHCEEE
T ss_pred HHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCCeeEE
Confidence 88999998876432221111 11111111 334444433 456554 4566678899999999998755444444
No 141
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=97.41 E-value=0.0012 Score=70.06 Aligned_cols=206 Identities=12% Similarity=0.058 Sum_probs=124.1
Q ss_pred CCccEEEEEEEeC------CCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEE
Q 002352 15 TTIPVNVGLVLDM------NGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAIL 88 (932)
Q Consensus 15 ~~~~i~IG~i~~~------s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aii 88 (932)
....-+||+++|. +..+-.....+++-++++. |+++ .+.++..++..-.+ ..+.+...+|++||
T Consensus 19 ~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~-------g~~~--~~~~~~~~~~~~~~-~~~~l~~~~vdgiI 88 (305)
T 3huu_A 19 TNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR-------GYST--RMTVSENSGDLYHE-VKTMIQSKSVDGFI 88 (305)
T ss_dssp --CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH-------TCEE--EECCCSSHHHHHHH-HHHHHHTTCCSEEE
T ss_pred hCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC-------CCEE--EEEeCCCChHHHHH-HHHHHHhCCCCEEE
Confidence 3456789999997 2344445666777666654 2444 45666555544444 44444445898877
Q ss_pred ccCChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCc--CCC
Q 002352 89 GPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQY--GEE 166 (932)
Q Consensus 89 Gp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~--g~~ 166 (932)
--...... .....+...++|+|...... . .+.+..+..++..-+..+++++...|-+++++|...... ...
T Consensus 89 i~~~~~~~-~~~~~l~~~~iPvV~i~~~~---~---~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~ 161 (305)
T 3huu_A 89 LLYSLKDD-PIEHLLNEFKVPYLIVGKSL---N---YENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTED 161 (305)
T ss_dssp ESSCBTTC-HHHHHHHHTTCCEEEESCCC---S---STTCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHHH
T ss_pred EeCCcCCc-HHHHHHHHcCCCEEEECCCC---c---ccCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhHH
Confidence 43222222 33445556799999976532 1 122334566777778888899988899999999875432 344
Q ss_pred hHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHH-hc--CCceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 167 MIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKL-FT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 167 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l-~~--~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
..+.+.+++++.|+.+.. .+. . ..+.-...+.++ .+ .++++|+ +++...+..+++++++.|+..|+-+-|+
T Consensus 162 R~~Gf~~~l~~~g~~~~~--~~~-~-~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~di~vi 235 (305)
T 3huu_A 162 RSVGFKQYCDDVKISNDC--VVI-K-SMNDLRDFIKQYCIDASHMPSVII-TSDVMLNMQLLNVLYEYQLRIPEDIQTA 235 (305)
T ss_dssp HHHHHHHHHHHTTCCCCE--EEE-C-SHHHHHHHC--------CCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHHHHcCCCccc--EEe-c-CcHHHHHHHHHhhhcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCcceEEE
Confidence 578889999999977654 111 1 111133444444 33 3456554 4666778899999999998755444333
No 142
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=97.41 E-value=0.0017 Score=69.78 Aligned_cols=206 Identities=8% Similarity=0.016 Sum_probs=128.9
Q ss_pred ccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEc-cCChh
Q 002352 17 IPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILG-PEKSM 94 (932)
Q Consensus 17 ~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiG-p~~s~ 94 (932)
+..+||+++|... .+-.....+++-++++. |++ +.+.++..++..-.+....++.+ ++++||- |....
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~--~~~~~~~~~~~~~~~~i~~~~~~-~vdgiIi~~~~~~ 71 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEA-------GYK--TDLQYADDDIPNQLSQIENMVTK-GVKVLVIASIDGT 71 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHT-------TCE--EEEEECTTCHHHHHHHHHHHHHH-TCSEEEECCSSGG
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHc-------CCE--EEEeeCCCCHHHHHHHHHHHHHc-CCCEEEEEcCCch
Confidence 3468999999754 45555677777777653 344 44555777888777778888876 8888774 44444
Q ss_pred HHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHH-------cCCeEEEEEEEcCC--cCC
Q 002352 95 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKA-------FGWREAVPIYVDNQ--YGE 165 (932)
Q Consensus 95 ~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~-------~~w~~v~ii~~d~~--~g~ 165 (932)
........+...++|+|.+....+.. . +....+..++...+..+++++.. .|-++++++..... ...
T Consensus 72 ~~~~~~~~~~~~giPvV~~~~~~~~~--~--~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~ 147 (330)
T 3uug_A 72 TLSDVLKQAGEQGIKVIAYDRLIRNS--G--DVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAF 147 (330)
T ss_dssp GGHHHHHHHHHTTCEEEEESSCCCSC--T--TCCEEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHH
T ss_pred hHHHHHHHHHHCCCCEEEECCCCCCC--C--ceeEEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHH
Confidence 44555666777899999986543221 1 12234455677778888888766 68889999975332 224
Q ss_pred ChHHHHHHHHHhC---C-ceeeeee-----ecCCCCChhHHHHHHHHHhc-----CCceEEEEEeChhhHHHHHHHHHhC
Q 002352 166 EMIPSLTDALQAI---D-TRVPYRS-----VISPLATDDQIEKELYKLFT-----MQTRVFILHMLPSLGSRIFEKANEI 231 (932)
Q Consensus 166 ~~~~~l~~~l~~~---g-~~v~~~~-----~~~~~~~~~~~~~~l~~l~~-----~~~~viil~~~~~~~~~l~~~a~~~ 231 (932)
...+.+.+++++. | +.+.... ......+.+.-...+.++.+ .++++| ++.+...+..+++++++.
T Consensus 148 ~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai-~~~nd~~A~g~~~al~~~ 226 (330)
T 3uug_A 148 FFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAV-LSPYDGLSIGIISSLKGV 226 (330)
T ss_dssp HHHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGGGCHHHHHHHHHHHHHHHCSSSCCCEE-ECSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccccCceEEeecccccccccCCCCCHHHHHHHHHHHHHhcCCCCCeEEE-EECCCchHHHHHHHHHHc
Confidence 4467788888875 3 5543211 00111222333344444443 455554 345566788999999999
Q ss_pred Cccccc
Q 002352 232 GLMNKG 237 (932)
Q Consensus 232 g~~~~~ 237 (932)
|+..|+
T Consensus 227 g~~vP~ 232 (330)
T 3uug_A 227 GYGTKD 232 (330)
T ss_dssp TCSSSS
T ss_pred CCCCCC
Confidence 987654
No 143
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=97.39 E-value=0.0032 Score=65.73 Aligned_cols=200 Identities=12% Similarity=0.059 Sum_probs=120.2
Q ss_pred CccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChh
Q 002352 16 TIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSM 94 (932)
Q Consensus 16 ~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~ 94 (932)
..+.+||+++|..+ .+-.....+++-++++. |+.+.+.. ...++..-. ++ ++++||-.....
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~~~~--~~~~~~~~~----~~----~vdgiI~~~~~~ 68 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLALF-------DYEMIVCS--GKKSHLFIP----EK----MVDGAIILDWTF 68 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHTT-------TCEEEEEE--STTTTTCCC----TT----TCSEEEEECTTS
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHHC-------CCeEEEEe--CCCCHHHHh----hc----cccEEEEecCCC
Confidence 45578999998643 44445566666665542 35555433 322221110 11 566666422221
Q ss_pred HHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCC--cCCChHHHHH
Q 002352 95 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLT 172 (932)
Q Consensus 95 ~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~ 172 (932)
....+ ..+...++|+|.+....+ .+.+..+..++...+..+++++...|.+++++|..+.. ........+.
T Consensus 69 ~~~~~-~~l~~~~iPvV~~~~~~~------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 141 (277)
T 3cs3_A 69 PTKEI-EKFAERGHSIVVLDRTTE------HRNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVST 141 (277)
T ss_dssp CHHHH-HHHHHTTCEEEESSSCCC------STTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHH
T ss_pred CHHHH-HHHHhcCCCEEEEecCCC------CCCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHH
Confidence 12223 334457999999764322 12345566677777888888888889999999986532 2345577888
Q ss_pred HHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcC---CceEEEEEeChhhHHHHHHHHHhCCccccceEEEEe
Q 002352 173 DALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM---QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMT 243 (932)
Q Consensus 173 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~---~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t 243 (932)
+++++.|+.+. . +....+.++-...+.++.+. .+++|+ +.+...+..+++++++.|+..|+-+.|++
T Consensus 142 ~~l~~~g~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg 211 (277)
T 3cs3_A 142 RELTRFGIPYE-I--IQGDFTEPSGYAAAKKILSQPQTEPVDVF-AFNDEMAIGVYKYVAETNYQMGKDIRIIG 211 (277)
T ss_dssp HHHHHTTCCEE-E--EECCSSHHHHHHHHHHHTTSCCCSSEEEE-ESSHHHHHHHHHHHTTSSCCBTTTEEEEC
T ss_pred HHHHHcCCCee-E--EeCCCChhHHHHHHHHHHhcCCCCCcEEE-EcChHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 99999997765 2 11122344445566666654 455554 45666788899999999987665555553
No 144
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=97.39 E-value=0.00097 Score=71.63 Aligned_cols=68 Identities=18% Similarity=0.276 Sum_probs=49.6
Q ss_pred CCCHHHHHhCCCcEEEEcChhHH----HHHHhcCCCccccccc-CCHHHHHHHhhcccCCCceeEEEeccccccccccc
Q 002352 663 ITDFQMLIKSGDNVGYRKDSFVF----GILKQLGFDEKKLIAY-SSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQ 736 (932)
Q Consensus 663 i~s~~dL~~~~~~vg~~~~s~~~----~~l~~~~~~~~~~~~~-~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~ 736 (932)
|++++||. |++|++..|+... .+|++.+.+...+... -+..+...+|.+|+ +||++...++......+
T Consensus 123 I~s~~DLk--Gk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G~----vDa~~~~~p~~~~~~~~ 195 (324)
T 3ksx_A 123 LRTVADLK--GKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYLSPANARAAFAAGQ----VDAWAIWDPWYSALTLD 195 (324)
T ss_dssp CCSGGGGT--TCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTC----CSEEEEETTHHHHHHHT
T ss_pred CCCHHHhC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHcCC----CCEEEEccHHHHHHHhc
Confidence 89999999 9999999887544 3455556554333322 26788999999999 99988877776655444
No 145
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=97.37 E-value=0.0044 Score=66.72 Aligned_cols=199 Identities=13% Similarity=0.076 Sum_probs=124.3
Q ss_pred CccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChh
Q 002352 16 TIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSM 94 (932)
Q Consensus 16 ~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~ 94 (932)
...-+||++.|... .+-.....+++-++++. |+.+.+ .++.. +..-.+....++.+ ++++||-...
T Consensus 62 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~~--~~~~~-~~~~~~~~~~l~~~-~vdGiIi~~~-- 128 (333)
T 3jvd_A 62 HRSALVGVIVPDLSNEYYSESLQTIQQDLKAA-------GYQMLV--AEANS-VQAQDVVMESLISI-QAAGIIHVPV-- 128 (333)
T ss_dssp --CCEEEEEESCSSSHHHHHHHHHHHHHHHHH-------TCEEEE--EECCS-HHHHHHHHHHHHHH-TCSEEEECCC--
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC-------CCEEEE--ECCCC-hHHHHHHHHHHHhC-CCCEEEEcch--
Confidence 34577999998644 44556677777777664 344444 44444 44444445555554 8888886433
Q ss_pred HHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCC--cCCChHHHHH
Q 002352 95 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLT 172 (932)
Q Consensus 95 ~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~ 172 (932)
...+...++|+|.+....+. +.+..+..++...+..+++++...|-+++++|..... ......+.+.
T Consensus 129 -----~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 197 (333)
T 3jvd_A 129 -----VGSIAPEGIPMVQLTRGELG------PGFPRVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGIS 197 (333)
T ss_dssp -----TTCCC-CCSCEEEECC----------CCSCEEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHH
T ss_pred -----HHHHhhCCCCEEEECccCCC------CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHH
Confidence 44566789999998653321 2223445667777888888888889999999986533 2345578899
Q ss_pred HHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCC-ceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 173 DALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ-TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 173 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~-~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
+++++.|+.. .... ...+.++....+.++.+.. +++|+ +++...+..+++++++.|+..|+-+-|+
T Consensus 198 ~al~~~g~~~--~~~~-~~~~~~~~~~~~~~ll~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~disvi 264 (333)
T 3jvd_A 198 HAASIYGAEV--TFHF-GHYSVESGEEMAQVVFNNGLPDALI-VASPRLMAGVMRAFTRLNVRVPHDVVIG 264 (333)
T ss_dssp HHHHHTTCEE--EEEE-CCSSHHHHHHHHHHHHHTCCCSEEE-ECCHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHCCCCE--EEec-CCCCHHHHHHHHHHHhcCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 9999999871 1110 1223344445555555433 56654 4566678899999999999765544444
No 146
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=97.30 E-value=0.0057 Score=65.28 Aligned_cols=207 Identities=10% Similarity=0.089 Sum_probs=113.4
Q ss_pred ccEEEEEEEeC---CC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCC
Q 002352 17 IPVNVGLVLDM---NG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEK 92 (932)
Q Consensus 17 ~~i~IG~i~~~---s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~ 92 (932)
++.+||+++|. +. .+-.....|++.+.++. |+++.+ .++..+. ........++.+ ++.+||....
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~-------g~~~~~--~~~~~~~-~~~~~l~~l~~~-~~dgIi~~~~ 71 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQEN-------NAKCKY--VTASTDA-EYVPSLSAFADE-NMGLVVACGS 71 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHT-------TCEEEE--EECCSGG-GHHHHHHHHHHT-TCSEEEEEST
T ss_pred CCcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHh-------CCeEEE--EeCCCHH-HHHHHHHHHHHc-CCCEEEECCh
Confidence 45789999972 22 34444555666655543 344443 3332222 223445555554 8888886432
Q ss_pred hhHHHHHHHhcCC-CCccEEecccCCCCccCCCCCceEecccCchhHHHHH----HHHHHHcCC-eEEEEEEEcC-CcCC
Q 002352 93 SMQTNFIIQLGNK-SQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAI----TAIIKAFGW-REAVPIYVDN-QYGE 165 (932)
Q Consensus 93 s~~a~~v~~~~~~-~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai----~~~l~~~~w-~~v~ii~~d~-~~g~ 165 (932)
.. ...+..++.. -++|++......+ . .+.+-.... +..++..+ ++.+...|- ++|++|.... ....
T Consensus 72 ~~-~~~~~~~a~~~p~~p~v~id~~~~---~--~~~~~~v~~-d~~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~~~ 144 (318)
T 2fqx_A 72 FL-VEAVIETSARFPKQKFLVIDAVVQ---D--RDNVVSAVF-GQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMMP 144 (318)
T ss_dssp TT-HHHHHHHHHHCTTSCEEEESSCCC---S--CTTEEEEEE-CHHHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTTH
T ss_pred hH-HHHHHHHHHHCCCCEEEEEcCccC---C--CCCEEEEEe-chHHHHHHHHHHHHHHhccCCCcEEEEEeCcccHHHH
Confidence 21 2224444443 3799988754221 0 123322223 34444333 456666676 8999997542 2334
Q ss_pred ChHHHHHHHHHhCCceeeeeeecCCCC-ChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEEe
Q 002352 166 EMIPSLTDALQAIDTRVPYRSVISPLA-TDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMT 243 (932)
Q Consensus 166 ~~~~~l~~~l~~~g~~v~~~~~~~~~~-~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t 243 (932)
.....+.+.+++.|..+.....+.... +...-.....++.+.++++|+ +.....+..+++++++.|+. |.-++++.
T Consensus 145 ~r~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~-~~~d~~a~Gv~~a~~e~g~~-P~dv~viG 221 (318)
T 2fqx_A 145 LFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIF-QVAGGTGNGVIKEARDRRLN-GQDVWVIG 221 (318)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEE-EECGGGHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEE-ECCCCCchHHHHHHHhhhhc-cCCcEEEE
Confidence 457778888888776543322222121 222333445555566788765 44555677889999998887 54455543
No 147
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=97.30 E-value=0.01 Score=63.94 Aligned_cols=205 Identities=8% Similarity=-0.065 Sum_probs=116.3
Q ss_pred ccCCCCCccEEEEEEEeCC---CccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEE
Q 002352 10 ATSKNTTIPVNVGLVLDMN---GEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQA 86 (932)
Q Consensus 10 ~~~~~~~~~i~IG~i~~~s---~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~a 86 (932)
+.++++.++++||++++-. ..+-.....|++.+.++.+ -++++.+.++..+.....+...+++++ ++.+
T Consensus 18 g~~~~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G-------~~~~~~~~e~~~~~~d~~~~l~~l~~~-g~d~ 89 (356)
T 3s99_A 18 GPGSMAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALG-------DKVETTFLENVAEGADAERSIKRIARA-GNKL 89 (356)
T ss_dssp --------CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHT-------TTEEEEEECSCCTTHHHHHHHHHHHHT-TCSE
T ss_pred CcccccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhC-------CceEEEEEecCCCHHHHHHHHHHHHHC-CCCE
Confidence 3445567789999999631 1344456667776666653 126666777665554556667777765 8999
Q ss_pred EEccCChhHHHHHHHhcCCC-CccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHH-HH-cCCeEEEEEEEcC-C
Q 002352 87 ILGPEKSMQTNFIIQLGNKS-QVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAII-KA-FGWREAVPIYVDN-Q 162 (932)
Q Consensus 87 iiGp~~s~~a~~v~~~~~~~-~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l-~~-~~w~~v~ii~~d~-~ 162 (932)
||+.. .....++..++.++ ++|++......+ .+++..... +..++.-++-++ .. -.-++|+.|.... +
T Consensus 90 Ii~~g-~~~~~~~~~vA~~~Pdv~fv~id~~~~------~~Nv~sv~~-~~~eg~ylaG~~A~~~tk~~kIGfVgg~~~p 161 (356)
T 3s99_A 90 IFTTS-FGYMDPTVKVAKKFPDVKFEHATGYKT------ADNMSAYNA-RFYEGRYVQGVIAAKMSKKGIAGYIGSVPVP 161 (356)
T ss_dssp EEECS-GGGHHHHHHHHTTCTTSEEEEESCCCC------BTTEEEEEE-CHHHHHHHHHHHHHHHCSSCEEEEEECCCCH
T ss_pred EEECC-HHHHHHHHHHHHHCCCCEEEEEecccc------CCcEEEEEe-chhHHHHHHHHHHHHhcCCCEEEEECCCccH
Confidence 99864 34456677777775 788887643211 233332222 233444444432 11 1236899998533 2
Q ss_pred cCCChHHHHHHHHHhCCceeeeeeecCCC-CChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCc
Q 002352 163 YGEEMIPSLTDALQAIDTRVPYRSVISPL-ATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGL 233 (932)
Q Consensus 163 ~g~~~~~~l~~~l~~~g~~v~~~~~~~~~-~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~ 233 (932)
........|...++..+..+.....+.-. .+...-......|.+.++|+|+-+.+.. .++++|++.|.
T Consensus 162 ~v~~~~~GF~~G~k~~np~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv~~aa~e~Gv 230 (356)
T 3s99_A 162 EVVQGINSFMLGAQSVNPDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST---AAIQVAHDRGI 230 (356)
T ss_dssp HHHHHHHHHHHHHHTTCTTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---HHHHHHHHcCC
Confidence 22334677888888776554333333222 1223333455666678899887766554 57899999874
No 148
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=97.24 E-value=0.005 Score=68.53 Aligned_cols=209 Identities=9% Similarity=-0.006 Sum_probs=126.8
Q ss_pred CCCccEEEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCCh
Q 002352 14 NTTIPVNVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKS 93 (932)
Q Consensus 14 ~~~~~i~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s 93 (932)
....+-+||+++|.+..+-.....+++-++++.+ +.+.+...+...+ ....+. +.+|++||-..
T Consensus 21 ~~~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~g-------~~~~i~~~~~~~~------~i~~l~-~~~vDGiIi~~-- 84 (412)
T 4fe7_A 21 MFTKRHRITLLFNANKAYDRQVVEGVGEYLQASQ-------SEWDIFIEEDFRA------RIDKIK-DWLGDGVIADF-- 84 (412)
T ss_dssp CCCCCEEEEEECCTTSHHHHHHHHHHHHHHHHHT-------CCEEEEECC-CC---------------CCCSEEEEET--
T ss_pred CCCCCceEEEEeCCcchhhHHHHHHHHHHHHhcC-------CCeEEEecCCccc------hhhhHh-cCCCCEEEEec--
Confidence 3456789999999766666667778777777652 4455444332211 123333 44888888632
Q ss_pred hHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCc----CCChHH
Q 002352 94 MQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQY----GEEMIP 169 (932)
Q Consensus 94 ~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~----g~~~~~ 169 (932)
........+...++|+|......+... ..+.+-.+..++..-+..+++++...|-+++++|...... .....+
T Consensus 85 -~~~~~~~~l~~~~iPvV~i~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~ 161 (412)
T 4fe7_A 85 -DDKQIEQALADVDVPIVGVGGSYHLAE--SYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREY 161 (412)
T ss_dssp -TCHHHHHHHTTCCSCEEEEEECCSSGG--GSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHH
T ss_pred -CChHHHHHHhhCCCCEEEecCCccccc--cCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHH
Confidence 223455566778999999875432211 1233455667777788888999988899999999865433 345678
Q ss_pred HHHHHHHhCCceeeeeeecCC-CCChhHHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 170 SLTDALQAIDTRVPYRSVISP-LATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 170 ~l~~~l~~~g~~v~~~~~~~~-~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
.+.+++++.|+.......... ..+.......+.++.+ .++++|+ +++...+..+++++++.|+..|+-+-|+
T Consensus 162 Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI~-~~nD~~A~g~~~al~~~G~~vP~disvi 236 (412)
T 4fe7_A 162 AFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTGII-AVTDARARHILQVCEHLHIPVPEKLCVI 236 (412)
T ss_dssp HHHHHHTTSSSCCEEECCSCSSCSSHHHHHHHHHHHHHHSCTTEEEE-ESSHHHHHHHHHHHHHHTCCTTTTSEEE
T ss_pred HHHHHHHHcCCCccccccccccccchhhHHHHHHHHHHhCCCCeEEE-EEecHHHHHHHHHHHHcCCCCCceEEEE
Confidence 889999998876432211111 1122233344444332 3455554 5566778899999999998765544444
No 149
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=97.18 E-value=0.029 Score=58.99 Aligned_cols=196 Identities=12% Similarity=0.031 Sum_probs=108.7
Q ss_pred CccEEEEEEEeC--CC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCC
Q 002352 16 TIPVNVGLVLDM--NG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEK 92 (932)
Q Consensus 16 ~~~i~IG~i~~~--s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~ 92 (932)
.++.+||+++|. +. .+-.....|++.+.++. |+++ .+.++..++....+....++.+ ++.+||....
T Consensus 3 ~~~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~-------g~~~--~~~~~~~~~~~~~~~l~~l~~~-~vdgIi~~~~ 72 (296)
T 2hqb_A 3 GGGGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNL-------DVDV--VLEEGVNSEQKAHRRIKELVDG-GVNLIFGHGH 72 (296)
T ss_dssp ---CEEEEECCCC----CCTHHHHHHHHHHHHHS-------CCEE--EEECCCCSHHHHHHHHHHHHHT-TCCEEEECST
T ss_pred CCCcEEEEEECCCCCCCcHHHHHHHHHHHHHHHh-------CCeE--EEEeCCCCHHHHHHHHHHHHHC-CCCEEEEcCH
Confidence 345789999972 33 45445566666665543 3444 4455545544444555555554 8999998543
Q ss_pred hhHHHHHHHhcCCC-CccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHH-cCCeEEEEEEEcCCcCCChHHH
Q 002352 93 SMQTNFIIQLGNKS-QVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKA-FGWREAVPIYVDNQYGEEMIPS 170 (932)
Q Consensus 93 s~~a~~v~~~~~~~-~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~-~~w~~v~ii~~d~~~g~~~~~~ 170 (932)
.. ...+..++..+ ++|++......+ .+.+-....++..-+.....++.+ .+-++|++|....... ....
T Consensus 73 ~~-~~~~~~~~~~~p~~p~v~id~~~~------~~~~~~v~~d~~~g~~lag~la~~l~~~~~Ig~i~g~~~~~--r~~G 143 (296)
T 2hqb_A 73 AF-AEYFSTIHNQYPDVHFVSFNGEVK------GENITSLHFEGYAMGYFGGMVAASMSETHKVGVIAAFPWQP--EVEG 143 (296)
T ss_dssp HH-HHHHHTTTTSCTTSEEEEESCCCC------SSSEEEEEECCHHHHHHHHHHHHHTCSSSEEEEEESCTTCH--HHHH
T ss_pred hH-HHHHHHHHHHCCCCEEEEEecCcC------CCCEEEEEechHHHHHHHHHHHHhhccCCeEEEEcCcCchh--hHHH
Confidence 32 33455666554 799988754211 123322333333323323333333 2458999998543222 6788
Q ss_pred HHHHHHhCCceeeeeeecCCCC-ChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCC
Q 002352 171 LTDALQAIDTRVPYRSVISPLA-TDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIG 232 (932)
Q Consensus 171 l~~~l~~~g~~v~~~~~~~~~~-~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g 232 (932)
+.+.+++.|.. .....+.... +...-.....++.+.++++|+ +.+...+..+++++++.|
T Consensus 144 f~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~-~~~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 144 FVDGAKYMNES-EAFVRYVGEWTDADKALELFQELQKEQVDVFY-PAGDGYHVPVVEAIKDQG 204 (296)
T ss_dssp HHHHHHHTTCC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEE-CCCTTTHHHHHHHHHHHT
T ss_pred HHHHHHHhCCC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEE-ECCCCCCHHHHHHHHHcC
Confidence 99999998874 3222222121 222333455566666788765 445556778889999987
No 150
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=97.17 E-value=0.012 Score=61.60 Aligned_cols=212 Identities=11% Similarity=-0.009 Sum_probs=122.2
Q ss_pred EEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEec--CCCCHHHHHHHHHHHHhcCCeEEEEc-cCChhH
Q 002352 20 NVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRN--SKGDVVAAAAAALDLLNNVLVQAILG-PEKSMQ 95 (932)
Q Consensus 20 ~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D--~~~~~~~a~~~a~~li~~~~v~aiiG-p~~s~~ 95 (932)
+||++.|... .+-.....+++.++++.+ +.+. +.+ +..++..-.+....++.+ +|++||- |.....
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~g-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~vdgiIi~~~~~~~ 72 (288)
T 1gud_A 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTLG-------VSVD--IFASPSEGDFQSQLQLFEDLSNK-NYKGIAFAPLSSVN 72 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHT-------CCEE--EEECSSTTCHHHHHHHHHHHHTS-SEEEEEECCSSSST
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHcC-------CEEE--EeCCCCCCCHHHHHHHHHHHHHc-CCCEEEEeCCChHH
Confidence 6899988543 444456667776666542 3443 344 556765555555666654 8998774 333322
Q ss_pred HHHHHHhcCCCCccEEecccCCCCcc--CCCCCceEecccCchhHHHHHHHHHHHc-C--CeEEEEEEEcCCc--CCChH
Q 002352 96 TNFIIQLGNKSQVPILSFSATSPSLT--SIRSSYFFRGSLNDSSQVGAITAIIKAF-G--WREAVPIYVDNQY--GEEMI 168 (932)
Q Consensus 96 a~~v~~~~~~~~iP~Is~~a~~~~l~--~~~~p~~~r~~ps~~~~~~ai~~~l~~~-~--w~~v~ii~~d~~~--g~~~~ 168 (932)
.......+...++|+|.+....+... ....++.-.+..++..-+..+++++... | -+++++|...... .....
T Consensus 73 ~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R~ 152 (288)
T 1gud_A 73 LVMPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARR 152 (288)
T ss_dssp THHHHHHHHHTTCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEECCCCCcccccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhHHH
Confidence 22223334457899998764321100 0000110235566666677788887665 7 7999999864322 23446
Q ss_pred HHHHHHHHhC-CceeeeeeecCCCCChhHHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHhCCccccceEEEEecc
Q 002352 169 PSLTDALQAI-DTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEG 245 (932)
Q Consensus 169 ~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t~~ 245 (932)
+.+.+++++. |+.+..... ...+.+.-...+.++.+. .+++| ++.+...+..+++++++.|+. .+...+.-|.
T Consensus 153 ~Gf~~al~~~~g~~~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~ai-~~~nD~~A~g~~~al~~~G~~-~dv~vvGfD~ 228 (288)
T 1gud_A 153 NGATEAFKKASQIKLVASQP--ADWDRIKALDVATNVLQRNPNIKAI-YCANDTMAMGVAQAVANAGKT-GKVLVVGTDG 228 (288)
T ss_dssp HHHHHHHHTCTTEEEEEEEE--CTTCHHHHHHHHHHHHHHCTTCCEE-EESSHHHHHHHHHHHHHTTCT-TTSEEEEESC
T ss_pred HHHHHHHHhCCCcEEEEeec--CCccHHHHHHHHHHHHHhCCCceEE-EECCCchHHHHHHHHHhcCCC-CCeEEEEeCC
Confidence 7788999887 876644321 122333333444554433 35554 445666788999999999984 3444454443
No 151
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=97.14 E-value=0.0017 Score=70.38 Aligned_cols=136 Identities=17% Similarity=0.149 Sum_probs=96.3
Q ss_pred HHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeee----ccccccccccccccccCeEEEEEccCCC
Q 002352 480 IEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTIL----ANRSKFVEFTLPYTESGVSMIVPIKDNK 555 (932)
Q Consensus 480 a~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it----~~R~~~vdfs~p~~~~~~~~lv~~~~~~ 555 (932)
.++.|+ ++++++.. ++..++..|.+|++|+++++.... .++.....+..++...+..+++++...
T Consensus 59 ~~~~g~--~v~~~~~~--------~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 127 (346)
T 3qsl_A 59 FKDEGL--DVSIADFA--------GGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKNL- 127 (346)
T ss_dssp HHHTTC--EEEEEECS--------SHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTTC-
T ss_pred hHhhCC--eEEEEecC--------ChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCcc-
Confidence 466784 46665543 588999999999999998776544 455566777767766677777775421
Q ss_pred CCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCCCCCCcccccccchhhhHHHHhhhcCcccccccchhhhHHHH
Q 002352 556 KKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGPAQHQVGTSFWFSFSTMVFSHRERVISNLARFVMIVW 635 (932)
Q Consensus 556 ~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w 635 (932)
T Consensus 128 -------------------------------------------------------------------------------- 127 (346)
T 3qsl_A 128 -------------------------------------------------------------------------------- 127 (346)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCCcEEEE-cChhH----HHHHHhcCCCc--ccccccCCHHHHH
Q 002352 636 YFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGDNVGYR-KDSFV----FGILKQLGFDE--KKLIAYSSPEECD 708 (932)
Q Consensus 636 ~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~vg~~-~~s~~----~~~l~~~~~~~--~~~~~~~~~~~~~ 708 (932)
++|++++||. |++|++. .|+.. ..++++.+... .+++.+....+..
T Consensus 128 -------------------------~~i~s~~DL~--Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~ 180 (346)
T 3qsl_A 128 -------------------------PGYKGPADLK--GRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAV 180 (346)
T ss_dssp -------------------------TTCCSGGGGT--TCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHH
T ss_pred -------------------------cCCCChHHcC--CCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHH
Confidence 1289999998 9999998 57644 34455556543 3445666777899
Q ss_pred HHhhcccCCCceeEEEecccccccccccC
Q 002352 709 ELFQKGSAGGGIAAAFDEIPYTKPFIGQY 737 (932)
Q Consensus 709 ~~l~~g~~~~g~~a~~~~~~~~~~~~~~~ 737 (932)
.+|.+|+ +|+++...++......+.
T Consensus 181 ~al~~G~----vDa~~~~~p~~~~~~~~g 205 (346)
T 3qsl_A 181 TALRSGQ----IDAISNTDPVVSMLETSG 205 (346)
T ss_dssp HHHHHTS----CSEEEEETTHHHHHHHTT
T ss_pred HHHHcCC----ccEEEecchhHHHHHhCC
Confidence 9999999 999998777665544443
No 152
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=97.13 E-value=0.00041 Score=73.72 Aligned_cols=78 Identities=13% Similarity=0.029 Sum_probs=54.1
Q ss_pred CceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEee-eeeeccc---cccccccccc
Q 002352 465 SASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGD-TTILANR---SKFVEFTLPY 540 (932)
Q Consensus 465 ~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~-~~it~~R---~~~vdfs~p~ 540 (932)
+..+.|+.+.+-+-+.++.|+ ++++++.. ....++..|.+|++|+++++ ......| ...+.+..++
T Consensus 14 ~~~~~~~~va~~~g~~~~~Gl--~v~~~~~~--------~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~ 83 (302)
T 3ix1_A 14 NAVHTFLYVAIENGYFAEEGL--DVDIVFPT--------NPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVV 83 (302)
T ss_dssp CGGGHHHHHHHHTTHHHHTTE--EEEEECCS--------STTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEE
T ss_pred CcccHHHHHHHHcChHHHcCC--cEEEecCC--------CCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEe
Confidence 345678888888889999994 46665543 24589999999999999877 2223333 3355565666
Q ss_pred cccCeEEEEEcc
Q 002352 541 TESGVSMIVPIK 552 (932)
Q Consensus 541 ~~~~~~~lv~~~ 552 (932)
...+..+++++.
T Consensus 84 ~~~~~~l~~~~~ 95 (302)
T 3ix1_A 84 RSPLNHVMFLAE 95 (302)
T ss_dssp CSCCEEEEEEGG
T ss_pred ccCCEEEEEECC
Confidence 666777887754
No 153
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=97.07 E-value=0.0038 Score=66.01 Aligned_cols=122 Identities=13% Similarity=0.119 Sum_probs=79.9
Q ss_pred CCCCHHHHHh------CCCcEEEE-cChhHH----HHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEeccccc
Q 002352 662 TITDFQMLIK------SGDNVGYR-KDSFVF----GILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYT 730 (932)
Q Consensus 662 ~i~s~~dL~~------~~~~vg~~-~~s~~~----~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~ 730 (932)
+++|++||+. ....+|.. .|+..+ .+++..+.+.. .+.|....+.+.+|..|+ +|+++......
T Consensus 122 ~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~~~-~Vpy~G~~~a~~aL~~G~----VD~~~~~~~~~ 196 (312)
T 2f5x_A 122 PPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVNLL-TIPYKGTAPAMNDLLGKQ----VDLMCDQTTNT 196 (312)
T ss_dssp SCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCCCE-EEECSSHHHHHHHHHTTS----SCEEEEEHHHH
T ss_pred CCCCHHHHHHHHHhCCCceEEeCCCCCcHHHHHHHHHHHHHCCCeE-EeccCChHHHHHHHHcCC----ccEEEechHHH
Confidence 3899999984 22467765 344322 23344555433 458999999999999999 99999876555
Q ss_pred ccccccC-CcceEEe--------cc--cc---------cccceEEEecCCCC--ChHHHHHHHHhhhccchHHHHHHHhc
Q 002352 731 KPFIGQY-CSKYTLI--------ER--TF---------ETAGFGFAFPLHSP--LVPEVSRAILNVTEGNKMKEIEDEWF 788 (932)
Q Consensus 731 ~~~~~~~-~~~l~~~--------~~--~~---------~~~~~~~~~~k~s~--l~~~in~~il~l~e~G~~~~~~~~~~ 788 (932)
..+++.. .+-+-+. ++ .+ ....++++.|++-| ++..+++++.++.+++.+++..+++-
T Consensus 197 ~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~g 276 (312)
T 2f5x_A 197 TQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQLG 276 (312)
T ss_dssp HHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHcCCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHCC
Confidence 4444332 1111111 00 11 12246889999865 99999999999999998887776653
No 154
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=97.05 E-value=0.017 Score=62.55 Aligned_cols=206 Identities=9% Similarity=0.032 Sum_probs=117.3
Q ss_pred CccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCC-CHHHHHHHHHHHHhcCCeEEEE--ccC
Q 002352 16 TIPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKG-DVVAAAAAALDLLNNVLVQAIL--GPE 91 (932)
Q Consensus 16 ~~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~-~~~~a~~~a~~li~~~~v~aii--Gp~ 91 (932)
....+||++.|.-. .+-.....+++.++++. |+.+.+. +... ++..-.+....++.+ +|++|| +|.
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~~~--~~~~~~~~~~~~~l~~l~~~-~vdGiIi~~~~ 128 (349)
T 1jye_A 59 KQSLLIGVATSSLALHAPSQIVAAILSRADQL-------GASVVVS--MVERSGVEACKTAVHNLLAQ-RVSGLIINYPL 128 (349)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHT-------TCEEEEE--ECCSSSHHHHHHHHHHHHTT-TCSCEEEESCC
T ss_pred CCCCEEEEEeCCCCcccHHHHHHHHHHHHHHc-------CCEEEEE--eCCCCcHHHHHHHHHHHHHC-CCCEEEEecCC
Confidence 34578999998543 33334555665555532 4555543 3333 333334444555544 787766 454
Q ss_pred ChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCC--cCCChHH
Q 002352 92 KSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQ--YGEEMIP 169 (932)
Q Consensus 92 ~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~ 169 (932)
.... .....+...++|+|...... ....+ .+..++..-+..+++++...|.+++++|..... .......
T Consensus 129 ~~~~--~~~~~~~~~~iPvV~i~~~~----~~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~ 199 (349)
T 1jye_A 129 DDQD--AIAVEAACTNVPALFLDVSD----QTPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLA 199 (349)
T ss_dssp CHHH--HHHHHHHTTTSCEEESSSCT----TSSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHH
T ss_pred CChh--HHHHHHhhCCCCEEEEcccC----CCCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHH
Confidence 4322 22233345789999876421 11122 344556666777778887779999999986432 2234567
Q ss_pred HHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcC--CceEEEEEeChhhHHHHHHHHHhCCccccceEEEEe
Q 002352 170 SLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMT 243 (932)
Q Consensus 170 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~t 243 (932)
.|.+++++.|+.+..... ...+..+-...+.++.+. .+++|+ +++...+..+++++++.|+..|+-+-|++
T Consensus 200 Gf~~al~~~gi~~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disvvG 272 (349)
T 1jye_A 200 GWHKYLTRNQIQPIAERE--GDWSAMSGFQQTMQMLNEGIVPTAML-VANDQMALGAMRAITESGLRVGADISVVG 272 (349)
T ss_dssp HHHHHHHHTTCCCSEEEE--CCSSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCBTTTBEEEC
T ss_pred HHHHHHHHcCCCcccccc--CCCChHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 888999999876433211 112222223344444433 456654 45566788999999999987665544443
No 155
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=96.95 E-value=0.0048 Score=65.31 Aligned_cols=121 Identities=18% Similarity=0.214 Sum_probs=79.5
Q ss_pred CCCHHHHHhC------CCcEEEE-cChhH----HHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccc
Q 002352 663 ITDFQMLIKS------GDNVGYR-KDSFV----FGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTK 731 (932)
Q Consensus 663 i~s~~dL~~~------~~~vg~~-~~s~~----~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~ 731 (932)
++|++||+.. ...+|.. .|+.. +.+++..+.+.. .+.|....+.+.+|..|+ +++++.......
T Consensus 127 ~~tl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~~~-~Vpy~G~~~a~~al~~G~----vD~~~~~~~~~~ 201 (314)
T 2dvz_A 127 AKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTDIV-HVPYKGSGPAVADAVGGQ----IELIFDNLPSSM 201 (314)
T ss_dssp CSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCCCE-EEECSSHHHHHHHHHHTS----SSEEEEEHHHHH
T ss_pred CCCHHHHHHHHHhCCCcEEEeCCCCCcHHHHHHHHHHHHhCCCeE-EcccCCHHHHHHHHHcCC----ceEEEEcHHHHH
Confidence 8899999752 2367765 35432 233344555433 458999999999999999 999988765544
Q ss_pred cccccC-CcceEEec--------c--cc---------cccceEEEecCCCC--ChHHHHHHHHhhhccchHHHHHHHhc
Q 002352 732 PFIGQY-CSKYTLIE--------R--TF---------ETAGFGFAFPLHSP--LVPEVSRAILNVTEGNKMKEIEDEWF 788 (932)
Q Consensus 732 ~~~~~~-~~~l~~~~--------~--~~---------~~~~~~~~~~k~s~--l~~~in~~il~l~e~G~~~~~~~~~~ 788 (932)
.+++.. .+-+-+.. + .+ ....++++.|++-| .+..+++++.++.+++.+++..+++-
T Consensus 202 ~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~g 280 (314)
T 2dvz_A 202 PQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQG 280 (314)
T ss_dssp HHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHCC
Confidence 444332 11121110 0 01 12346888999864 89999999999999998888777663
No 156
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=96.81 E-value=0.0021 Score=55.55 Aligned_cols=77 Identities=14% Similarity=0.043 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhhcccCCCCCCcccccccchhhhHHHHhhhcC-cc-cccccchhhhHHHHHHHHHhhhhhhhhhhhhhhh
Q 002352 578 FIFIGFVVWVLEHRVNEDFRGPAQHQVGTSFWFSFSTMVFSH-RE-RVISNLARFVMIVWYFVVLILTQSYTASLSSLLT 655 (932)
Q Consensus 578 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt 655 (932)
+++.+++++++|+..+ +....++.+++|+++.++...| ++ .|.+..+|++.++|+++++.+.+...+.+++.++
T Consensus 19 ~~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~ 94 (103)
T 2k1e_A 19 LEEASKKAVEAERGAP----GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFV 94 (103)
T ss_dssp HHHHHHHHHHHHTTST----TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGG
T ss_pred HHHHHHhhhhhccCCC----CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777778887543 2334578999999999999877 44 5789999999999999999999999999999987
Q ss_pred ccc
Q 002352 656 VQQ 658 (932)
Q Consensus 656 ~~~ 658 (932)
...
T Consensus 95 ~~~ 97 (103)
T 2k1e_A 95 RRE 97 (103)
T ss_dssp GHH
T ss_pred HHH
Confidence 543
No 157
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=96.81 E-value=0.0024 Score=68.40 Aligned_cols=59 Identities=20% Similarity=0.266 Sum_probs=43.8
Q ss_pred CCCHHHHHhCCCcEEEE-cChhH----HHHHHhcCCCccc--ccccCCHHHHHHHhhcccCCCceeEEEecc
Q 002352 663 ITDFQMLIKSGDNVGYR-KDSFV----FGILKQLGFDEKK--LIAYSSPEECDELFQKGSAGGGIAAAFDEI 727 (932)
Q Consensus 663 i~s~~dL~~~~~~vg~~-~~s~~----~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~ 727 (932)
|++++||. ++++++. .|+.. +.+++..+.+... .+.|....+.+.+|..|+ +|+++...
T Consensus 138 i~sl~DL~--gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~G~----vDa~~~~~ 203 (327)
T 4ddd_A 138 ISVIDDIK--GKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCDNK----IDVMVDVI 203 (327)
T ss_dssp CCSGGGGT--TSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHTTS----CSBEEEEE
T ss_pred CCCHHHhC--CCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHcCC----CCEEEEcc
Confidence 88999998 8899884 55533 3455555665433 357889999999999999 99888743
No 158
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=96.73 E-value=0.0065 Score=63.98 Aligned_cols=119 Identities=13% Similarity=0.072 Sum_probs=79.6
Q ss_pred CCCHHHHHhC------CCcEEEE-cChhHH----HHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccc
Q 002352 663 ITDFQMLIKS------GDNVGYR-KDSFVF----GILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTK 731 (932)
Q Consensus 663 i~s~~dL~~~------~~~vg~~-~~s~~~----~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~ 731 (932)
++|++||+.. ...+|.. .|+..+ .+++..+.+.. .+.|....+.+.+|..|+ +++++.......
T Consensus 114 ~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~G~~~~-~Vpy~g~~~a~~al~~G~----vD~~~~~~~~~~ 188 (301)
T 2qpq_A 114 YKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTHMV-HVPYKGCGPALNDVLGSQ----IGLAVVTASSAI 188 (301)
T ss_dssp CCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCCCE-EEECSSHHHHHHHHHTTS----SSCEEEEHHHHH
T ss_pred CCCHHHHHHHHHhCCCceEEecCCCCcHHHHHHHHHHHHhCCCeE-EeccCChHHHHHHHHCCC----ccEEEEcHHHHH
Confidence 8899999852 2366665 244332 23344555433 458999999999999999 999988765544
Q ss_pred cccccCCcceEEec---c----------cc---------cccceEEEecCCCC--ChHHHHHHHHhhhccchHHHHHHHh
Q 002352 732 PFIGQYCSKYTLIE---R----------TF---------ETAGFGFAFPLHSP--LVPEVSRAILNVTEGNKMKEIEDEW 787 (932)
Q Consensus 732 ~~~~~~~~~l~~~~---~----------~~---------~~~~~~~~~~k~s~--l~~~in~~il~l~e~G~~~~~~~~~ 787 (932)
.+++.. +++.+. + .+ ....++++.|++-| .+..+++++.++.+++.+++..+++
T Consensus 189 ~~i~~g--~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~~~~~~~~~~~ 266 (301)
T 2qpq_A 189 PFIKAG--KLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRDDVQKKLADL 266 (301)
T ss_dssp HHHHTT--SEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhcC--CeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 433322 132221 0 01 12346888999865 8999999999999999888887766
Q ss_pred c
Q 002352 788 F 788 (932)
Q Consensus 788 ~ 788 (932)
-
T Consensus 267 g 267 (301)
T 2qpq_A 267 G 267 (301)
T ss_dssp T
T ss_pred C
Confidence 3
No 159
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=96.60 E-value=0.0094 Score=65.05 Aligned_cols=212 Identities=10% Similarity=0.050 Sum_probs=116.6
Q ss_pred CccEEEEEEEeCCCc--cchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCCh
Q 002352 16 TIPVNVGLVLDMNGE--DGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKS 93 (932)
Q Consensus 16 ~~~i~IG~i~~~s~~--~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s 93 (932)
...-+||+++|.... ........+..++++.=+ |+.+.+...+...+. . .....+.+...+|++||-....
T Consensus 66 ~~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~-----g~~~~~~~~~~~~~~-~-~~~~~~~l~~~~vdGiIi~~~~ 138 (366)
T 3h5t_A 66 RRAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG-----DTQLTLIPASPASSV-D-HVSAQQLVNNAAVDGVVIYSVA 138 (366)
T ss_dssp --CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS-----SCEEEEEECCCCTTC-C-HHHHHHHHHTCCCSCEEEESCC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHh-----hCCEEEEEcCCCccH-H-HHHHHHHHHhCCCCEEEEecCC
Confidence 445779999987431 111122222333333211 566766665543221 1 1223444444477777642222
Q ss_pred hHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEc-------------
Q 002352 94 MQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVD------------- 160 (932)
Q Consensus 94 ~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d------------- 160 (932)
... .....+...++|+|...... ..... -.+..++..-+..+++++...|-+++++|...
T Consensus 139 ~~~-~~~~~l~~~~iPvV~i~~~~---~~~~~---~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~ 211 (366)
T 3h5t_A 139 KGD-PHIDAIRARGLPAVIADQPA---REEGM---PFIAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRE 211 (366)
T ss_dssp TTC-HHHHHHHHHTCCEEEESSCC---SCTTC---CEEEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHH
T ss_pred CCh-HHHHHHHHCCCCEEEECCcc---CCCCC---CEEEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCccccc
Confidence 222 23334455689999876422 11222 33556777778888889988999999999832
Q ss_pred ------CCcCCChHHHHHHHHHhCCceeeeeeec-CCCCChhHHHHHHHHHhc--CCceEEEEEeChhhHHHHHHHHHhC
Q 002352 161 ------NQYGEEMIPSLTDALQAIDTRVPYRSVI-SPLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEI 231 (932)
Q Consensus 161 ------~~~g~~~~~~l~~~l~~~g~~v~~~~~~-~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~l~~~a~~~ 231 (932)
........+.+.+++++.|+.+.....+ ....+.+.-...+.++.+ ..+++|+ +++...+..+++++++.
T Consensus 212 ~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~ 290 (366)
T 3h5t_A 212 RLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHPDLTAVL-CTVDALAFGVLEYLKSV 290 (366)
T ss_dssp HHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHT
T ss_pred cccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCCCCHHHHHHHHHHHHcCCCCCcEEE-ECCcHHHHHHHHHHHHc
Confidence 1222345678899999988764321111 111233333344444443 3456554 45566788999999999
Q ss_pred CccccceEEEE
Q 002352 232 GLMNKGCVWIM 242 (932)
Q Consensus 232 g~~~~~~~wi~ 242 (932)
|+..|+-+-|+
T Consensus 291 G~~vP~disvi 301 (366)
T 3h5t_A 291 GKSAPADLSLT 301 (366)
T ss_dssp TCCTTTTCEEE
T ss_pred CCCCCCceEEE
Confidence 98765544343
No 160
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=96.34 E-value=0.0059 Score=54.47 Aligned_cols=75 Identities=13% Similarity=0.172 Sum_probs=60.7
Q ss_pred HHHHHHHHhhhcccCCCCCCcccccccchhhhHHHHhhhcC-cc-cccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhc
Q 002352 579 IFIGFVVWVLEHRVNEDFRGPAQHQVGTSFWFSFSTMVFSH-RE-RVISNLARFVMIVWYFVVLILTQSYTASLSSLLTV 656 (932)
Q Consensus 579 i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 656 (932)
++.+++++.+|+..+ ++...++.+++|+++.++...| ++ .|.+..+|++.++|+++++.+.+...+.+++.++.
T Consensus 41 ~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~ 116 (122)
T 2ih3_C 41 LAGSYLAVLAERGAP----GAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 116 (122)
T ss_dssp HHHHHHHHHHHTTST----TCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhheeeecCC----CCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777886542 2334578999999999999776 44 57899999999999999999999999999999865
Q ss_pred c
Q 002352 657 Q 657 (932)
Q Consensus 657 ~ 657 (932)
.
T Consensus 117 ~ 117 (122)
T 2ih3_C 117 R 117 (122)
T ss_dssp H
T ss_pred H
Confidence 4
No 161
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=96.17 E-value=0.088 Score=56.04 Aligned_cols=217 Identities=10% Similarity=0.050 Sum_probs=130.5
Q ss_pred CccEEEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCC----C--cEEEEEE---ecCCC--CHHHHHHHHHHHHhcCCe
Q 002352 16 TIPVNVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHY----K--TRLLLNT---RNSKG--DVVAAAAAALDLLNNVLV 84 (932)
Q Consensus 16 ~~~i~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~----g--~~l~~~~---~D~~~--~~~~a~~~a~~li~~~~v 84 (932)
...++||++...- ..+..-.++++..+++.|..+... | ..+.+++ +.+.. ....+++...++...+++
T Consensus 10 ~~~~~igi~t~t~-s~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~se~~ttI~~I~~~a~~~gy 88 (371)
T 3qi7_A 10 IDDFKVAVVTQPL-SENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTSNIDSAINKIVKLADDKEV 88 (371)
T ss_dssp CCCEEEEEEECCT-TTCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGGGHHHHHHHHHGGGGCTTE
T ss_pred CCCeEEEEEcCCc-CCCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchHHHHHHHHHHHHHhhcCCC
Confidence 3469999987543 446677889999999999743211 1 1122222 33332 223467788888888999
Q ss_pred EEEEccCChhHHHHHHHhcCCCCccEEecccCCCCcc-C-CCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCC
Q 002352 85 QAILGPEKSMQTNFIIQLGNKSQVPILSFSATSPSLT-S-IRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQ 162 (932)
Q Consensus 85 ~aiiGp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~-~-~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~ 162 (932)
.+||.-..............+.+++.|-+.+....-. . ..... +.+..++..-+..+++.+...|-++++.|.....
T Consensus 89 k~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~~d-i~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp~~ 167 (371)
T 3qi7_A 89 QAIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQFVD-VNLGVSAEERGKVLAERSKEMGAKAFIHYASTDD 167 (371)
T ss_dssp EEEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHHSS-EEEECCHHHHHHHHHHHHHHTTCSCEEEEEETTG
T ss_pred eEEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhcccCc-eEEEeChHHHHHHHHHHHHHCCCCEEEEEecccc
Confidence 9988744433234445556656666655444322100 0 00111 2355555566777778899999999999987432
Q ss_pred c----CCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHh---------cCCceEEEEEeChhhHHHHHHHHH
Q 002352 163 Y----GEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLF---------TMQTRVFILHMLPSLGSRIFEKAN 229 (932)
Q Consensus 163 ~----g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~viil~~~~~~~~~l~~~a~ 229 (932)
. .....+.+++++++.|+.+..... + ..+.+.-....+++. ..+..--|++++...+..++++++
T Consensus 168 ~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~-~-d~t~e~G~~~a~~lL~~~~~~~~~~~~~~TAIFatND~mAiG~ikal~ 245 (371)
T 3qi7_A 168 LKDVNIAKRLEMIKETCKNIGLPFVQVNT-P-NINTEEDKNKVKQFLNEDIEKQVKKYGKDINVFGVNEYMDEVILTKAL 245 (371)
T ss_dssp GGSHHHHHHHHHHHHHHHHTTCCEEEEEE-C-CCSSTHHHHHHHHHHHHHHHHHHHHHCSCCEEEESSHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHcCCCceeecC-C-CCchHHHHHHHHHHHhccccchhhccCCCcEEEECCHHHHHHHHHHHH
Confidence 2 222467799999999997765432 2 222222222222221 223334667788888999999999
Q ss_pred hCCcccc
Q 002352 230 EIGLMNK 236 (932)
Q Consensus 230 ~~g~~~~ 236 (932)
+.|...|
T Consensus 246 e~Gi~VP 252 (371)
T 3qi7_A 246 ELKYIVA 252 (371)
T ss_dssp HHCCBBC
T ss_pred HcCCccC
Confidence 9997544
No 162
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=95.98 E-value=0.017 Score=53.81 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=61.6
Q ss_pred HHHHHHHHhhhcccCCCCCCcccccccchhhhHHHHhhhcC-cc-cccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhc
Q 002352 579 IFIGFVVWVLEHRVNEDFRGPAQHQVGTSFWFSFSTMVFSH-RE-RVISNLARFVMIVWYFVVLILTQSYTASLSSLLTV 656 (932)
Q Consensus 579 i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 656 (932)
++.+++++.+|+..+ +....++.+++|+++.++...| ++ .|.+..+|++.++|+++++.+.+..++.+++.++.
T Consensus 64 ~~~a~~~~~~E~~~~----~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~ 139 (155)
T 2a9h_A 64 LAGSYLAVLAERGAP----GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVG 139 (155)
T ss_dssp HHHHHHHHHHHTTSS----CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCC----CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777876532 2334578899999999999876 44 57899999999999999999999999999999986
Q ss_pred ccc
Q 002352 657 QQL 659 (932)
Q Consensus 657 ~~~ 659 (932)
...
T Consensus 140 ~~~ 142 (155)
T 2a9h_A 140 REQ 142 (155)
T ss_dssp CCC
T ss_pred HHH
Confidence 544
No 163
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=95.69 E-value=0.029 Score=51.13 Aligned_cols=57 Identities=7% Similarity=0.273 Sum_probs=49.9
Q ss_pred ccccchhhhHHHHhhhcC-cc-cccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccc
Q 002352 602 HQVGTSFWFSFSTMVFSH-RE-RVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQ 658 (932)
Q Consensus 602 ~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~ 658 (932)
.++.+++|+++.++...| ++ .|.+..+|++.++|+++++.+.+...+.+++.+....
T Consensus 42 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 100 (137)
T 4h33_A 42 NNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKK 100 (137)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999876 44 6789999999999999999999999999999886543
No 164
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=95.64 E-value=0.052 Score=54.16 Aligned_cols=69 Identities=12% Similarity=0.011 Sum_probs=49.2
Q ss_pred EeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeeccccccccccccccccCeEEEEE
Q 002352 471 YSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVP 550 (932)
Q Consensus 471 ~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~ 550 (932)
+-.+++..+.++.+ .+++++.. ++..+++.+|.+|++|+++....... ..+. +.++....++++++
T Consensus 25 ~l~~~l~~~~~~~P-~v~i~~~~---------~~~~~~~~~l~~g~~Dl~i~~~~~~~---~~l~-~~~l~~~~~~~v~~ 90 (232)
T 3ho7_A 25 LLPRVFPIWKKELA-GLEIHVSE---------MQTSRCLASLLSGEIDMAIIASKAET---EGLE-DDLLYYEEFLGYVS 90 (232)
T ss_dssp HHHHHHHHHHHHST-TEEEEEEE---------CCHHHHHHHHHHTSCSEEEESSCCCC---TTEE-EEEEEEEEEEEEEC
T ss_pred hhHHHHHHHHHHCC-CcEEEEEe---------CCHHHHHHHHHcCCCCEEEEcCCCCC---CCeE-EEEecccCEEEEEc
Confidence 55688889988887 35666554 34789999999999999986543322 2333 36778888888887
Q ss_pred ccC
Q 002352 551 IKD 553 (932)
Q Consensus 551 ~~~ 553 (932)
+..
T Consensus 91 ~~h 93 (232)
T 3ho7_A 91 RCE 93 (232)
T ss_dssp TTS
T ss_pred CCC
Confidence 653
No 165
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=95.63 E-value=0.026 Score=51.69 Aligned_cols=73 Identities=15% Similarity=0.164 Sum_probs=58.1
Q ss_pred HHHHHHHhhhcccCCCCCCcccccccchhhhHHHHhhhcC-cc-cccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhc
Q 002352 580 FIGFVVWVLEHRVNEDFRGPAQHQVGTSFWFSFSTMVFSH-RE-RVISNLARFVMIVWYFVVLILTQSYTASLSSLLTV 656 (932)
Q Consensus 580 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 656 (932)
+.+++++.+++.. .+....++.+++|+++.++...| ++ .|.+..+|++.++|+++++++.+...+.+++.+..
T Consensus 21 ~~a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 21 AGSYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 95 (139)
T ss_dssp HHHHHHHHTTSSC----TTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHHHHHHhcCC----CCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777643 22344578899999999999776 43 67899999999999999999999999999998843
No 166
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=95.63 E-value=0.045 Score=58.30 Aligned_cols=87 Identities=17% Similarity=0.199 Sum_probs=51.4
Q ss_pred CCCHHHHHhCCCcEEEEc-ChhHHH---HH-HhcCCCc-ccccccCCHHHHHHHhhcc----cCCCceeEEEeccccccc
Q 002352 663 ITDFQMLIKSGDNVGYRK-DSFVFG---IL-KQLGFDE-KKLIAYSSPEECDELFQKG----SAGGGIAAAFDEIPYTKP 732 (932)
Q Consensus 663 i~s~~dL~~~~~~vg~~~-~s~~~~---~l-~~~~~~~-~~~~~~~~~~~~~~~l~~g----~~~~g~~a~~~~~~~~~~ 732 (932)
|++++|| ++||+.. |+.... .+ ++.+.+. .+++.+++..+...+|..| + ++|++.+......
T Consensus 112 i~s~~DL----K~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~G~~~~~----vDa~~~ep~~~~~ 183 (321)
T 2x7q_A 112 VTDAKQL----KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNLKDGVEG----SDAFMWEYFTSKK 183 (321)
T ss_dssp CSSGGGC----CEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTTCTTSCC----CSEEEEEHHHHHH
T ss_pred CCChHHc----ceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHcCCCccc----eEEEEecCccchh
Confidence 8899999 7899976 654332 22 3445542 3556677888899999999 8 9998655433222
Q ss_pred ccccCCcceEEeccccccc-ceEEEecC
Q 002352 733 FIGQYCSKYTLIERTFETA-GFGFAFPL 759 (932)
Q Consensus 733 ~~~~~~~~l~~~~~~~~~~-~~~~~~~k 759 (932)
.... +.+..+.+..... ..++++++
T Consensus 184 ~~~~--g~~~~~~d~~~~~~~~~l~~~~ 209 (321)
T 2x7q_A 184 YYDN--HEIKQIDQIYTPWSSWVVATSS 209 (321)
T ss_dssp HHHT--TSEEEEEEEECSSCSEEEEEEH
T ss_pred hccC--CceEEccccCCCCceEEEEEcH
Confidence 2221 2244444332222 23566665
No 167
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=95.54 E-value=0.32 Score=50.83 Aligned_cols=181 Identities=13% Similarity=0.127 Sum_probs=108.9
Q ss_pred EEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecccccccccccccc-ccCeEEE
Q 002352 470 GYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYT-ESGVSMI 548 (932)
Q Consensus 470 G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~-~~~~~~l 548 (932)
.+-..++..+.++.+ .+++++... +..+++.+|.+|++|+++.... .....+. ..|+. ....+++
T Consensus 108 ~~l~~~l~~f~~~~P-~i~i~l~~~---------~~~~~~~~l~~g~~Dl~i~~~~---~~~~~l~-~~~l~~~~~~~~v 173 (306)
T 3fzv_A 108 LYLPGLIAGFRQAYP-GVEIRIRDG---------EQQELVQGLTSGRFDLAFLYEH---DLDSTIE-TEPLMPPQRPHAL 173 (306)
T ss_dssp HHHHHHHHHHHHHCT-TEEEEEEEE---------CHHHHHHHHHHTSCSEEEECSS---SCCTTEE-EEESSCCBCCEEE
T ss_pred HHHHHHHHHHHHHCC-CeEEEEEeC---------CHHHHHHHHHCCCccEEEEecc---ccccccc-eeeeeeccccEEE
Confidence 455678899999886 356666553 4788999999999999976322 2222232 34565 6777778
Q ss_pred EEccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCCCCCCcccccccchhhhHHHHhhhcCcccccccch
Q 002352 549 VPIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGPAQHQVGTSFWFSFSTMVFSHRERVISNLA 628 (932)
Q Consensus 549 v~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~ 628 (932)
+++..+..
T Consensus 174 ~~~~~pl~------------------------------------------------------------------------ 181 (306)
T 3fzv_A 174 LPEGHRFA------------------------------------------------------------------------ 181 (306)
T ss_dssp EETTCTTT------------------------------------------------------------------------
T ss_pred ecCCCccc------------------------------------------------------------------------
Confidence 87653321
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCCcEEEEcC-h---hHHHHHHhcCCCcccccccCCH
Q 002352 629 RFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGDNVGYRKD-S---FVFGILKQLGFDEKKLIAYSSP 704 (932)
Q Consensus 629 R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~vg~~~~-s---~~~~~l~~~~~~~~~~~~~~~~ 704 (932)
....-+++||. +.++..... . ....++.+.+.........++.
T Consensus 182 -------------------------------~~~~~~~~dL~--~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 228 (306)
T 3fzv_A 182 -------------------------------GQAQVSLRDLC--LEPMILLDVQPSRTYFVSLFEELGLTPNIAFSSPSI 228 (306)
T ss_dssp -------------------------------TSSEECHHHHT--TSCEEEECCTTHHHHHHHHHHHTTCCCCEEEEESCH
T ss_pred -------------------------------CCCCCCHHHHc--CCCEEEecCCcchHHHHHHHHHcCCCCCeEEEeCCH
Confidence 00123689998 555544332 2 2344555666655445567889
Q ss_pred HHHHHHhhcccCCCceeEEEecccccccccccCCcceEEe--cccccccceEEEecCCCCChHHHHHHHHhhh
Q 002352 705 EECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYCSKYTLI--ERTFETAGFGFAFPLHSPLVPEVSRAILNVT 775 (932)
Q Consensus 705 ~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~k~s~l~~~in~~il~l~ 775 (932)
+...+.+..|. ..+++-+.......... ..+..+ ........++++.+++......+...+..+.
T Consensus 229 ~~~~~~v~~g~----Gia~lp~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~ 295 (306)
T 3fzv_A 229 EMVRGMVGQGF----GFSLLVTRPHSECTYDG--KKVVMVDLAEPVSTSGLAAAWLKRAQLTKPARLFVDYCR 295 (306)
T ss_dssp HHHHHHHHTTS----CBEEECCCCSCSBCTTS--CBEEEEEESSCCCBCCCEEEEETTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCC----CEEEEecccccccccCC--CceEEEECCCCCccceEEEEEeCCcccCHHHHHHHHHHH
Confidence 99999999997 45555544333222111 114433 3334456778888888766666666555443
No 168
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=95.46 E-value=0.15 Score=51.41 Aligned_cols=119 Identities=11% Similarity=0.038 Sum_probs=82.7
Q ss_pred HHHHHHhcCCeEEEEccCChhHH--------HHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHH
Q 002352 74 AALDLLNNVLVQAILGPEKSMQT--------NFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAI 145 (932)
Q Consensus 74 ~a~~li~~~~v~aiiGp~~s~~a--------~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~ 145 (932)
++..|. ..++++|+-+.++... .....+.+..++|+++. ..++++.
T Consensus 58 aa~~L~-~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~-------------------------~~A~~~a 111 (240)
T 3ixl_A 58 HARRLQ-KQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTM-------------------------STAVLNG 111 (240)
T ss_dssp HHHHHH-HTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEH-------------------------HHHHHHH
T ss_pred HHHHhc-cCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECH-------------------------HHHHHHH
Confidence 344444 4599999986555443 34455556678998872 5678888
Q ss_pred HHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCC-------CChhHHHHHHHH-H-hcCCceEEEEEe
Q 002352 146 IKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPL-------ATDDQIEKELYK-L-FTMQTRVFILHM 216 (932)
Q Consensus 146 l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~-------~~~~~~~~~l~~-l-~~~~~~viil~~ 216 (932)
++..|-++|+++.. |.....+.+++.+++.|+++......... .+...+...+.+ + ...++|+||+.|
T Consensus 112 l~~~g~~rvglltp---y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL~C 188 (240)
T 3ixl_A 112 LRALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLSS 188 (240)
T ss_dssp HHHTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEEC
T ss_pred HHHhCCCEEEEEeC---ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEEeC
Confidence 88899999999975 77777788899999999998765442211 123456667777 6 667788888887
Q ss_pred ChhhH
Q 002352 217 LPSLG 221 (932)
Q Consensus 217 ~~~~~ 221 (932)
..-..
T Consensus 189 T~l~~ 193 (240)
T 3ixl_A 189 GGLLT 193 (240)
T ss_dssp TTSCC
T ss_pred CCCch
Confidence 65433
No 169
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=95.36 E-value=0.031 Score=62.06 Aligned_cols=103 Identities=13% Similarity=0.078 Sum_probs=61.5
Q ss_pred HHHHhCCCcEEEE-cChhHHH----HHHhcCCCc---ccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCC
Q 002352 667 QMLIKSGDNVGYR-KDSFVFG----ILKQLGFDE---KKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYC 738 (932)
Q Consensus 667 ~dL~~~~~~vg~~-~~s~~~~----~l~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~ 738 (932)
+||. |++||+. .++.... +|++.+.+. .+++.+ ...+...+|.+|+ +||++...++......+..
T Consensus 151 ~dLk--Gk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v~~-~~~~~~~aL~~G~----vDa~~~~eP~~~~~~~~g~ 223 (417)
T 2g29_A 151 AKVT--DPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVV-PPAQMVANVKVNA----MESFCVGEPWPLQTVNQGV 223 (417)
T ss_dssp HTSS--SCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEEC-CGGGHHHHHHTTS----CSEEEEETTHHHHHHHHTS
T ss_pred HhcC--CCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEEEC-CHHHHHHHHHcCC----CCEEEeCCCHHHHHHHcCC
Confidence 7787 9999997 4665433 445556543 345555 4578899999999 9999987777655554432
Q ss_pred cceEEe-cccccccc-eEEEecCC----CC-----ChHHHHHHHHhhhc
Q 002352 739 SKYTLI-ERTFETAG-FGFAFPLH----SP-----LVPEVSRAILNVTE 776 (932)
Q Consensus 739 ~~l~~~-~~~~~~~~-~~~~~~k~----s~-----l~~~in~~il~l~e 776 (932)
...... .+.....+ .+++++++ .| ++..+.++...+.+
T Consensus 224 ~~~~~~~~~~~~~~p~~~l~~~~~~~~~~p~~~~~~~~A~~~A~~~~~~ 272 (417)
T 2g29_A 224 GYQALTTGQLWKDHPEKAFGMRADWVDQNPKAAKALLMAVMEAQQWCDQ 272 (417)
T ss_dssp CEEEEEGGGTBTTCBCEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEechhhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 222222 22222222 46677653 22 44456666666665
No 170
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=95.27 E-value=0.24 Score=48.45 Aligned_cols=69 Identities=16% Similarity=0.152 Sum_probs=48.8
Q ss_pred EeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeeccccccccccccccccCeEEEEE
Q 002352 471 YSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVP 550 (932)
Q Consensus 471 ~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~ 550 (932)
+-.+++..+.++.+ .+++++... +...++.+|.+|++|+++...... ...+. ..++....++++++
T Consensus 18 ~l~~~l~~~~~~~P-~i~i~i~~~---------~~~~~~~~l~~g~~Dl~i~~~~~~---~~~~~-~~~l~~~~~~~v~~ 83 (219)
T 3jv9_A 18 LLPKLIVSLRRTAP-KMPLMLEEN---------YTHTLTESLKRGDVDAIIVAEPFQ---EPGIV-TEPLYDEPFFVIVP 83 (219)
T ss_dssp HHHHHHHHHHHHST-TCCEEEEEE---------CHHHHHHHHHHTSSSEEEEESSCC---CTTEE-EEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCC-CcEEEEEeC---------CcHHHHHHHHcCCCCEEEEcCCCC---CCCee-EEEeeeceEEEEEe
Confidence 45678888888876 366666553 367899999999999998754322 22333 36778888888888
Q ss_pred ccC
Q 002352 551 IKD 553 (932)
Q Consensus 551 ~~~ 553 (932)
+..
T Consensus 84 ~~~ 86 (219)
T 3jv9_A 84 KGH 86 (219)
T ss_dssp TTC
T ss_pred CCC
Confidence 653
No 171
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=95.09 E-value=0.69 Score=44.83 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=47.0
Q ss_pred EeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeeccccccccccccccccCeEEEEE
Q 002352 471 YSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVP 550 (932)
Q Consensus 471 ~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~ 550 (932)
+-.+++..+.++.+ .+++++... +...++.+|.+|++|+++.... .....+. +.++....++++++
T Consensus 19 ~l~~~l~~f~~~~P-~i~i~l~~~---------~~~~l~~~l~~g~~Dl~i~~~~---~~~~~l~-~~~l~~~~~~~v~~ 84 (209)
T 2ql3_A 19 ILPSMLYAFTAEYP-RASVEFRED---------TQNRLRTQLEGGELDVAIVYDL---DLSPEWQ-TVPLMTREPMVVLG 84 (209)
T ss_dssp THHHHHHHHHHHCT-TEEEEEEEC---------CHHHHHHHHHTTSCSEEEEESS---SCCTTEE-EEEEEEECCEEEEE
T ss_pred hHHHHHHHHHHHCC-CceEEEEEC---------cHHHHHHHHHcCCccEEEEecC---CCCCCce-EEEeecCceEEEEe
Confidence 45688899999887 466666542 4678999999999999885321 1112232 35777888888887
Q ss_pred cc
Q 002352 551 IK 552 (932)
Q Consensus 551 ~~ 552 (932)
+.
T Consensus 85 ~~ 86 (209)
T 2ql3_A 85 AE 86 (209)
T ss_dssp TT
T ss_pred CC
Confidence 55
No 172
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=94.91 E-value=0.06 Score=53.21 Aligned_cols=70 Identities=11% Similarity=0.080 Sum_probs=47.7
Q ss_pred EEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeeccccccccccccccccCeEEEE
Q 002352 470 GYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIV 549 (932)
Q Consensus 470 G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv 549 (932)
.+-.+++..+.++.+ .+++++... +...++.+|.+|++|+++..... ....+. ..++....+++++
T Consensus 21 ~~l~~~l~~f~~~~P-~i~i~i~~~---------~~~~~~~~l~~g~~Di~i~~~~~---~~~~~~-~~~l~~~~~~~v~ 86 (222)
T 4ab5_A 21 DWLMPAMGEFRPMWP-QVELDIVSG---------FQADPVGLLLQHRADLAIVSEAE---KQNGIS-FQPLFAYEMVGIC 86 (222)
T ss_dssp HHHHHHHHHHHHHST-TEEEEEECC---------CCSCTHHHHHTTSCSEEEESCCC---CCTTEE-EEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCC-CcEEEEecC---------CHHHHHHHHHcCCcCEEEecCCC---CcCCeE-EEEeecCcEEEEe
Confidence 345678888888886 355655442 34678999999999999874322 222333 3677888888888
Q ss_pred EccC
Q 002352 550 PIKD 553 (932)
Q Consensus 550 ~~~~ 553 (932)
++..
T Consensus 87 ~~~~ 90 (222)
T 4ab5_A 87 APDH 90 (222)
T ss_dssp CTTS
T ss_pred cCCC
Confidence 7653
No 173
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=94.84 E-value=0.14 Score=51.37 Aligned_cols=86 Identities=14% Similarity=0.180 Sum_probs=59.0
Q ss_pred CCCCcEEEEeecccCcccceEEEecCCCCCCceEEEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHc
Q 002352 435 TNKRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFR 514 (932)
Q Consensus 435 ~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~ 514 (932)
...++|+||+... -...+-..++..+.++.+ .+++++... +...++.+|.+
T Consensus 16 ~~~g~l~Ig~~~~-------------------~~~~~l~~~l~~f~~~~P-~i~l~~~~~---------~~~~~~~~l~~ 66 (241)
T 3oxn_A 16 QCDQTFTIATTDY-------------------AMQTILPFALPRIYQEAP-NVSFNFLPL---------QHDRLSDQLTY 66 (241)
T ss_dssp SCCCEEEEEECSH-------------------HHHHTHHHHHHHHHHHCT-TCEEEEEEC---------CGGGHHHHHHT
T ss_pred cCCceEEEEechH-------------------HHHHHHHHHHHHHHHHCC-CCEEEEEEC---------CcccHHHHHHc
Confidence 3467899998521 112455688899999876 356666553 36789999999
Q ss_pred CcccEEEeeeeeeccccccccccccccccCeEEEEEccC
Q 002352 515 GKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKD 553 (932)
Q Consensus 515 g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~ 553 (932)
|++|+++.... .....+. ..++....+++++++..
T Consensus 67 g~~Dl~i~~~~---~~~~~~~-~~~l~~~~~~~v~~~~h 101 (241)
T 3oxn_A 67 EGADLAICRPT---GPVEPLR-SEILGRVGVLCLLSKQH 101 (241)
T ss_dssp SCCSEEEECCS---SCCTTEE-EEEEECCCEEEEEETTS
T ss_pred CCCCEEEecCC---CCCccce-eEEeecccEEEEEeCCC
Confidence 99999987432 2223333 36788888999988663
No 174
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=94.81 E-value=0.094 Score=54.46 Aligned_cols=98 Identities=10% Similarity=-0.063 Sum_probs=54.8
Q ss_pred HHHHhCCCcEEEE-cChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecc-cccccccccCCcceEEe
Q 002352 667 QMLIKSGDNVGYR-KDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEI-PYTKPFIGQYCSKYTLI 744 (932)
Q Consensus 667 ~dL~~~~~~vg~~-~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~-~~~~~~~~~~~~~l~~~ 744 (932)
+||. |++||+. .++....+++.. ....++ .+.+..+..++|.+|+ +||++... +... +.+.. ++.+
T Consensus 99 ~DLk--GK~Iav~~~~s~~~~ll~~~-l~~~~~-~~~~~~~~~~al~~G~----vDa~~~~~~~~~~-~~~~g---~~~~ 166 (280)
T 1zbm_A 99 ISLD--GKRIAVPGRYTTANLLLKLA-VEDFEP-VEMPFDRIIQAVLDEE----VDAGLLIHEGQIT-YADYG---LKCV 166 (280)
T ss_dssp CCCT--TCEEEESCTTSHHHHHHHHH-CSSCEE-EECCGGGHHHHHHTTS----SSEEEECSGGGGT-GGGGT---CEEE
T ss_pred hhcC--CCEEEecCCCcHHHHHHHHH-hccCce-EecCHHHHHHHHHcCC----CCEEEEechHHhH-HHhcC---CeEe
Confidence 6787 9999996 455444445442 222243 3446678999999999 99987543 4443 22221 2222
Q ss_pred ccc---------ccccceEEEecCC-C-CChHHHHHHHHhhhc
Q 002352 745 ERT---------FETAGFGFAFPLH-S-PLVPEVSRAILNVTE 776 (932)
Q Consensus 745 ~~~---------~~~~~~~~~~~k~-s-~l~~~in~~il~l~e 776 (932)
.+. ......+++++++ . .+...|.+++.+..+
T Consensus 167 ~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~ 209 (280)
T 1zbm_A 167 LDLWDWWSEQVKLPLPLGLNAIRRDLSVEVQEEFLRAMRESIA 209 (280)
T ss_dssp EEHHHHHHTTCSSCEEEEEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhhCCCCCeeEEEEcccCCHHHHHHHHHHHHHHHH
Confidence 110 1111235777876 3 355666666665544
No 175
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=94.38 E-value=0.24 Score=53.53 Aligned_cols=59 Identities=17% Similarity=0.180 Sum_probs=45.5
Q ss_pred CCCCCHHHHHhCCCcEEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEeccccc
Q 002352 661 PTITDFQMLIKSGDNVGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYT 730 (932)
Q Consensus 661 ~~i~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~ 730 (932)
.+|++++||. |++|.+. +.....+++..+... ... ...|...+|++|. +|+.....+..
T Consensus 164 ~pI~s~~DLk--G~kirv~-~~~~~~~~~~lGa~p---v~~-~~~e~~~ALq~G~----VDg~~~~~~~~ 222 (361)
T 2zzv_A 164 KPIRRFEDFK--GVKLRVP-GGMIAEVFAAAGAST---VLL-PGGEVYPALERGV----IDAADFVGPAV 222 (361)
T ss_dssp SCCCSGGGGT--TCEEECC-SHHHHHHHHHTTCEE---ECC-CGGGHHHHHHTTS----CSEEECSCHHH
T ss_pred CCcCChHHhC--CCEEeec-CHHHHHHHHHcCCee---eec-ChHHHHHHHHcCC----cceeecCCcch
Confidence 4699999999 9999988 566677788877532 222 5678899999999 99998766555
No 176
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=94.25 E-value=0.18 Score=53.31 Aligned_cols=58 Identities=24% Similarity=0.149 Sum_probs=41.8
Q ss_pred CCCHHHHHhCCCcEEE-EcChhHH----HHHHhcCCCcccc--cccCCHHHHHHHhhcccCCCceeEEEec
Q 002352 663 ITDFQMLIKSGDNVGY-RKDSFVF----GILKQLGFDEKKL--IAYSSPEECDELFQKGSAGGGIAAAFDE 726 (932)
Q Consensus 663 i~s~~dL~~~~~~vg~-~~~s~~~----~~l~~~~~~~~~~--~~~~~~~~~~~~l~~g~~~~g~~a~~~~ 726 (932)
+++++||. ++++++ ..|+..+ .+++..+.....+ ..+.+..+.+.++..|+ +++.+..
T Consensus 123 i~sl~dL~--g~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~----vda~~~~ 187 (314)
T 1us5_A 123 IRTVADLK--GKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQDKR----ADALFYT 187 (314)
T ss_dssp CSSGGGGT--TSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHTTS----CSEEEEE
T ss_pred CCcHHHhC--CCEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHHHcCC----ccEEEEc
Confidence 78999998 788887 4565433 4455566654433 35678889999999999 8988865
No 177
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=93.87 E-value=0.17 Score=41.24 Aligned_cols=52 Identities=12% Similarity=0.113 Sum_probs=46.2
Q ss_pred cccchhhhHHHHhhhcC-cc-cccccchhhhHHHHHHHHHhhhhhhhhhhhhhh
Q 002352 603 QVGTSFWFSFSTMVFSH-RE-RVISNLARFVMIVWYFVVLILTQSYTASLSSLL 654 (932)
Q Consensus 603 ~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~L 654 (932)
++.+++|+++.++...| ++ .|.+..+|++.++|.++++.+.....+.+.+.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999876 43 578999999999999999999999999998865
No 178
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=93.72 E-value=0.36 Score=47.58 Aligned_cols=70 Identities=9% Similarity=0.017 Sum_probs=49.5
Q ss_pred EEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeeccccccccccccccccCeEEEE
Q 002352 470 GYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIV 549 (932)
Q Consensus 470 G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv 549 (932)
.+-..++..+.++.+ .++++.... +...++.+|.+|++|++++.. +.....+.+ .|+....+++++
T Consensus 21 ~~lp~~l~~f~~~~P-~v~l~l~~~---------~~~~l~~~L~~g~iDl~i~~~---~~~~~~l~~-~~l~~~~~~~v~ 86 (218)
T 2y7p_A 21 YFMPPLMEALAQRAP-HIQISTLRP---------NAGNLKEDMESGAVDLALGLL---PELQTGFFQ-RRLFRHRYVCMF 86 (218)
T ss_dssp HHHHHHHHHHHHHCT-TCEEEEECC---------CTTTHHHHHHHTSSCEEEECC---TTCCTTEEE-EEEEEECEEEEE
T ss_pred HHHHHHHHHHHHHCC-CCEEEEEeC---------CcccHHHHHhCCCceEEEecC---CCCCcceeE-EEeeeccEEEEE
Confidence 455678899998887 366666542 357899999999999998532 222233443 688889999999
Q ss_pred EccC
Q 002352 550 PIKD 553 (932)
Q Consensus 550 ~~~~ 553 (932)
++..
T Consensus 87 ~~~h 90 (218)
T 2y7p_A 87 RKDH 90 (218)
T ss_dssp ETTC
T ss_pred cCCC
Confidence 8664
No 179
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=93.66 E-value=0.1 Score=44.20 Aligned_cols=58 Identities=12% Similarity=0.255 Sum_probs=50.6
Q ss_pred ccccchhhhHHHHhhhcC-cc-cccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhcccc
Q 002352 602 HQVGTSFWFSFSTMVFSH-RE-RVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQL 659 (932)
Q Consensus 602 ~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~ 659 (932)
.++.+++|+++.++...| ++ .|.+..+|++.++|.++++.+.....+.+++.++.++.
T Consensus 31 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~ 90 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 90 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 367899999999999876 43 67899999999999999999999999999999876554
No 180
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=93.23 E-value=0.62 Score=46.30 Aligned_cols=80 Identities=6% Similarity=-0.055 Sum_probs=53.7
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCC-------CChhHHHHHHHHHhcC--Cc
Q 002352 139 VGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPL-------ATDDQIEKELYKLFTM--QT 209 (932)
Q Consensus 139 ~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~-------~~~~~~~~~l~~l~~~--~~ 209 (932)
..++++.++..|-++|+++. .|.....+.+++.+++.|+++......... .+...+...++++.+. ++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 45566667777889999996 455555667888999999887654433221 1234466666666666 78
Q ss_pred eEEEEEeChhhH
Q 002352 210 RVFILHMLPSLG 221 (932)
Q Consensus 210 ~viil~~~~~~~ 221 (932)
++||+.|..-..
T Consensus 173 daIvLgCT~l~~ 184 (223)
T 2dgd_A 173 DAVYIACTALST 184 (223)
T ss_dssp SEEEECCTTSCC
T ss_pred CEEEEeCCcccH
Confidence 888888765543
No 181
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=93.13 E-value=0.3 Score=48.04 Aligned_cols=70 Identities=14% Similarity=0.166 Sum_probs=48.7
Q ss_pred EEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeeccccccccccccccccCeEEEE
Q 002352 470 GYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIV 549 (932)
Q Consensus 470 G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv 549 (932)
.+-.+++..+.++.+ .++++... ++...++.+|.+|++|+++.... .....+. +.|+....+++++
T Consensus 18 ~~l~~~l~~f~~~~P-~v~l~l~~---------~~~~~~~~~l~~g~~Dl~i~~~~---~~~~~l~-~~~l~~~~~~~v~ 83 (219)
T 1i6a_A 18 YLLPHIIPMLHQTFP-KLEMYLHE---------AQTHQLLAQLDSGKLDAVILALV---KESEAFI-EVPLFDEPMLLAI 83 (219)
T ss_dssp HHHHHHHHHHHHHCT-TEEEEEEE---------CCHHHHHHHHHHTSCSEEEEECC---GGGTTSE-EEEEEEEEEEEEE
T ss_pred hhhhHHHHHHHHHCC-CeEEEEEE---------CChHHHHHHHHcCCeeEEEecCC---CCCCCcc-eeeeecccEEEEE
Confidence 455688889999887 45666554 24789999999999999886322 1122233 2578888888888
Q ss_pred EccC
Q 002352 550 PIKD 553 (932)
Q Consensus 550 ~~~~ 553 (932)
++..
T Consensus 84 ~~~h 87 (219)
T 1i6a_A 84 YEDH 87 (219)
T ss_dssp ETTS
T ss_pred cCCC
Confidence 8653
No 182
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=93.09 E-value=1 Score=44.34 Aligned_cols=69 Identities=10% Similarity=0.112 Sum_probs=42.3
Q ss_pred HHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCc-ccEEEeeeeeeccc---ccccc--ccccccccCeE
Q 002352 473 IAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGK-FDAVVGDTTILANR---SKFVE--FTLPYTESGVS 546 (932)
Q Consensus 473 ~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~-~D~~~~~~~it~~R---~~~vd--fs~p~~~~~~~ 546 (932)
-++++.+.++-|. ++++.. ++-..++.+|.+|+ +|+++..-....++ ...+. -..|+....++
T Consensus 15 ~~~~~~F~~~p~i--~v~~~~---------~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 83 (231)
T 1atg_A 15 EQLAGQFAKQTGH--AVVISS---------GSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLV 83 (231)
T ss_dssp HHHHHHHHHHHCC--CEEEEE---------ECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEE
T ss_pred HHHHHHHHhccCC--eEEEEE---------CCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEE
Confidence 3677777777564 455433 23578999999998 99986532111111 11111 24678888888
Q ss_pred EEEEcc
Q 002352 547 MIVPIK 552 (932)
Q Consensus 547 ~lv~~~ 552 (932)
+++++.
T Consensus 84 lv~~~~ 89 (231)
T 1atg_A 84 LWSAKP 89 (231)
T ss_dssp EEESST
T ss_pred EEEcCC
Confidence 888755
No 183
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=92.99 E-value=0.21 Score=43.61 Aligned_cols=55 Identities=13% Similarity=0.251 Sum_probs=47.9
Q ss_pred cccchhhhHHHHhhhcC-cc-cccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhcc
Q 002352 603 QVGTSFWFSFSTMVFSH-RE-RVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQ 657 (932)
Q Consensus 603 ~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~ 657 (932)
++.+++|+++.++...| ++ .|.+..+|++.++|.++++.+.....+.+.+.++..
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 105 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999776 44 578899999999999999999999999999987543
No 184
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=92.73 E-value=3.4 Score=40.52 Aligned_cols=70 Identities=19% Similarity=0.280 Sum_probs=47.9
Q ss_pred EEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeeccccccccccccccccCeEEEE
Q 002352 470 GYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIV 549 (932)
Q Consensus 470 G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv 549 (932)
.+-.+++..+.++.+ .+++++.. ++...++.+|.+|++|+++..... .....+. ..++....+++++
T Consensus 27 ~~l~~~l~~f~~~~P-~v~l~l~~---------~~~~~~~~~l~~g~~Dl~i~~~~~--~~~~~l~-~~~l~~~~~~~v~ 93 (228)
T 2fyi_A 27 YSLPEVIKAFRELFP-EVRLELIQ---------GTPQEIATLLQNGEADIGIASERL--SNDPQLV-AFPWFRWHHSLLV 93 (228)
T ss_dssp HTHHHHHHHHHHHCT-TEEEEEEE---------CCHHHHHHHHHHTSCSEEEESSSS--TTCTTEE-EEEEEEECEEEEE
T ss_pred HHHHHHHHHHHHHCC-CcEEEEEe---------CCHHHHHHHHHcCCccEEEEeccc--CCCCCce-EEEeeecceEEEe
Confidence 345688899999887 46666654 347899999999999998863211 1112232 3577888888888
Q ss_pred Ecc
Q 002352 550 PIK 552 (932)
Q Consensus 550 ~~~ 552 (932)
++.
T Consensus 94 ~~~ 96 (228)
T 2fyi_A 94 PHD 96 (228)
T ss_dssp ETT
T ss_pred cCC
Confidence 865
No 185
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=92.08 E-value=0.24 Score=57.28 Aligned_cols=118 Identities=5% Similarity=0.058 Sum_probs=69.8
Q ss_pred cccchhhhHHHHhhhcC-cc-cccccchhhhHHHHHHHHHhhhhhhhhh-hhhhhhcccc----CCC-CCCH-HHHHhCC
Q 002352 603 QVGTSFWFSFSTMVFSH-RE-RVISNLARFVMIVWYFVVLILTQSYTAS-LSSLLTVQQL----QPT-ITDF-QMLIKSG 673 (932)
Q Consensus 603 ~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~~~~~w~~~~lil~~~Yta~-L~s~Lt~~~~----~~~-i~s~-~dL~~~~ 673 (932)
++.+++||++.++...| ++ .|.+..+|++.++|+++++++.....+. ++++++.+.. ... .... +.+ .
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 127 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDDT---R 127 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCCTTC---C
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc---C
Confidence 68899999999999776 44 4688889999999999999888887776 5555433221 111 1111 111 2
Q ss_pred CcEEEE-cChhHHHHHHhcCCCcccccccCCHHHHHHHhhcc-cCCCceeEEEecc
Q 002352 674 DNVGYR-KDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKG-SAGGGIAAAFDEI 727 (932)
Q Consensus 674 ~~vg~~-~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g-~~~~g~~a~~~~~ 727 (932)
..+.+. -|.+.....+.+......+...+..++..+.+... . +.++..|.
T Consensus 128 ~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~----~~~i~Gd~ 179 (565)
T 4gx0_A 128 GHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEG----FKVVYGSP 179 (565)
T ss_dssp SCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCS----SEEEESCT
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcC----CeEEEeCC
Confidence 234433 34444444444333333455556555555555544 3 55555554
No 186
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=92.05 E-value=0.29 Score=48.78 Aligned_cols=74 Identities=9% Similarity=0.210 Sum_probs=57.9
Q ss_pred HHHHHHHHhhhcccCCCCCCcccccccchhhhHHHHhhhcC-cc-cccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhc
Q 002352 579 IFIGFVVWVLEHRVNEDFRGPAQHQVGTSFWFSFSTMVFSH-RE-RVISNLARFVMIVWYFVVLILTQSYTASLSSLLTV 656 (932)
Q Consensus 579 i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 656 (932)
++.+++++.+|+..+ ++...++.+++|+++.+++..| ++ .|.+..+|++.++++++++.+.+...+.+++.++.
T Consensus 145 ~~~~~~~~~~e~~~~----~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 145 LYGAFAIYIVEYPDP----NSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHHTTSSST----TCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc----CCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666665321 2234578899999999999776 44 57899999999999999999999999999998864
No 187
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=92.02 E-value=7.1 Score=40.79 Aligned_cols=193 Identities=12% Similarity=0.100 Sum_probs=114.6
Q ss_pred EEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeeccccccccccccccccCeEEEE
Q 002352 470 GYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIV 549 (932)
Q Consensus 470 G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv 549 (932)
.+-..++..+.++.+ .+++++.. ++.+.++.+|.+|++|+++...... ....+. +.|.....+++++
T Consensus 106 ~~l~~~l~~f~~~~P-~v~i~l~~---------~~~~~~~~~l~~g~~Dlai~~~~~~--~~~~l~-~~~L~~~~~~~v~ 172 (324)
T 1al3_A 106 YALPGVIKGFIERYP-RVSLHMHQ---------GSPTQIAEAVSKGNADFAIATEALH--LYDDLV-MLPCYHWNRSIVV 172 (324)
T ss_dssp HTSHHHHHHHHHHCT-EEEEEEEE---------CCHHHHHHHHHTTCCSEEEESSCCC--TTSCEE-EEEEEEECEEEEE
T ss_pred hHHHHHHHHHHHHCC-CCEEEEEE---------CCHHHHHHHHHCCCceEEEEecCCC--CCCCee-EEEecCCceEEEE
Confidence 345688889999887 35565554 2467899999999999998632211 112222 3567777888888
Q ss_pred EccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCCCCCCcccccccchhhhHHHHhhhcCcccccccchh
Q 002352 550 PIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGPAQHQVGTSFWFSFSTMVFSHRERVISNLAR 629 (932)
Q Consensus 550 ~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R 629 (932)
+...+..
T Consensus 173 ~~~~pl~------------------------------------------------------------------------- 179 (324)
T 1al3_A 173 TPEHPLA------------------------------------------------------------------------- 179 (324)
T ss_dssp CTTSTTT-------------------------------------------------------------------------
T ss_pred cCCCccc-------------------------------------------------------------------------
Confidence 7553211
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCCcEEEE-cCh----hHHHHHHhcCCCcccccccCCH
Q 002352 630 FVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGDNVGYR-KDS----FVFGILKQLGFDEKKLIAYSSP 704 (932)
Q Consensus 630 ~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~vg~~-~~s----~~~~~l~~~~~~~~~~~~~~~~ 704 (932)
....-+++||. +.++... .++ ....++...+.........++.
T Consensus 180 ------------------------------~~~~~~~~dL~--~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 227 (324)
T 1al3_A 180 ------------------------------TKGSVSIEELA--QYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDA 227 (324)
T ss_dssp ------------------------------TTSCCCHHHHH--TSEEEEECTTSTTHHHHHHHHHHHTCCCEEEEEESSH
T ss_pred ------------------------------cCCCCCHHHHh--CCCeEEecCCCcHHHHHHHHHHHcCCCCceEEEeCCH
Confidence 00134689998 5554443 332 2334555555544444567888
Q ss_pred HHHHHHhhcccCCCceeEEEecccccccccccCCcceEEec--ccccccceEEEecCCCCChHHHHHHHHhhhccchHHH
Q 002352 705 EECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYCSKYTLIE--RTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKE 782 (932)
Q Consensus 705 ~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~k~s~l~~~in~~il~l~e~G~~~~ 782 (932)
+...+++..|. ..+++.+.. ...... ..+..+. .......++++.+++.++...+...+..+.+. +-+.
T Consensus 228 ~~~~~lv~~G~----Giailp~~~-~~~~~~---~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~fi~~l~~~-~~~~ 298 (324)
T 1al3_A 228 DVIKTYVRLGL----GVGVIASMA-VDPVSD---PDLVKLDANGIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPH-LTRD 298 (324)
T ss_dssp HHHHHHHHHTS----CEEEEEGGG-CCTTTC---TTSEEEECBTTBCCEEEEEEEETTCCCCHHHHHHHHHHCTT-CCHH
T ss_pred HHHHHHHHhCC----CeEEechhh-hhhhcc---CCeEEEECCCCCcceEEEEEEeCCCCCCHHHHHHHHHHHHH-hccc
Confidence 88999999987 455555432 222111 1244332 22334567788888887777777777666654 2345
Q ss_pred HHHHhcc
Q 002352 783 IEDEWFK 789 (932)
Q Consensus 783 ~~~~~~~ 789 (932)
+.++++.
T Consensus 299 ~~~~~~~ 305 (324)
T 1al3_A 299 VVDTAVA 305 (324)
T ss_dssp HHHHHHH
T ss_pred hhhhhhh
Confidence 5555543
No 188
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=91.99 E-value=0.33 Score=51.18 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=52.2
Q ss_pred ccccccchhhhHHHHhhhcC-cc-cccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccC
Q 002352 600 AQHQVGTSFWFSFSTMVFSH-RE-RVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQ 660 (932)
Q Consensus 600 ~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 660 (932)
...++.+++||++.+++..| ++ .|.+..+|++.++++++++++.+..++.+++.++.+...
T Consensus 93 ~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~r 155 (333)
T 1p7b_A 93 SPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAK 155 (333)
T ss_dssp SSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred CCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999776 33 568889999999999999999999999999999876543
No 189
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=91.80 E-value=0.015 Score=55.03 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=50.7
Q ss_pred cccccccchhhhHHHHhhhcC-cc-cccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhc
Q 002352 599 PAQHQVGTSFWFSFSTMVFSH-RE-RVISNLARFVMIVWYFVVLILTQSYTASLSSLLTV 656 (932)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 656 (932)
....++.+++||++.+++..| ++ .|.+..+|++.++|+++++++.+...+.+++.++.
T Consensus 63 ~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~ 122 (166)
T 3pjs_K 63 AQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 122 (166)
T ss_dssp CCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSS
T ss_pred cccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678899999999999776 44 67899999999999999999999999999999864
No 190
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=91.73 E-value=1.5 Score=45.03 Aligned_cols=119 Identities=10% Similarity=0.056 Sum_probs=76.3
Q ss_pred HHHHHhcCCeEEEEccCChhHHH--------HHHHhcCCC-----CccEEecccCCCCccCCCCCceEecccCchhHHHH
Q 002352 75 ALDLLNNVLVQAILGPEKSMQTN--------FIIQLGNKS-----QVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGA 141 (932)
Q Consensus 75 a~~li~~~~v~aiiGp~~s~~a~--------~v~~~~~~~-----~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~a 141 (932)
+.+.+.+.++++|+-+..+.... ....+.+.. ++|+++. ..+
T Consensus 82 aa~~L~~~g~d~IviaCnta~~~~G~~~~~~~~~~l~~~~~~~~~~iPv~~~-------------------------~~A 136 (273)
T 2xed_A 82 CVLEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSS-------------------------AGA 136 (273)
T ss_dssp HHHHHHTTCCSEEEECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEH-------------------------HHH
T ss_pred HHHHHhhcCCCEEEECCChHHHhcccchhHHHHHHHHHHhhccCCCCCEecH-------------------------HHH
Confidence 33444556899998855554221 123343444 7888873 345
Q ss_pred HHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCC-------CChhHHHHHHHHHhcCCceEEEE
Q 002352 142 ITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPL-------ATDDQIEKELYKLFTMQTRVFIL 214 (932)
Q Consensus 142 i~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~-------~~~~~~~~~l~~l~~~~~~viil 214 (932)
+++.++..|-++|+++. .|.....+.+.+.+++.|+++......... .+...+...++++...++|+||+
T Consensus 137 ~~~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIvL 213 (273)
T 2xed_A 137 LVEGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVI 213 (273)
T ss_dssp HHHHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEEE
T ss_pred HHHHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEEE
Confidence 66666777889999996 455555668889999999987654443221 12345667777777778899999
Q ss_pred E-eChhhH
Q 002352 215 H-MLPSLG 221 (932)
Q Consensus 215 ~-~~~~~~ 221 (932)
. |..-..
T Consensus 214 g~CT~l~~ 221 (273)
T 2xed_A 214 SCAVQMPS 221 (273)
T ss_dssp ESSSSSCC
T ss_pred cCCCCcch
Confidence 8 765443
No 191
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=91.64 E-value=2 Score=44.61 Aligned_cols=180 Identities=12% Similarity=0.081 Sum_probs=107.7
Q ss_pred EEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeeccccccccccccccccCeEEEE
Q 002352 470 GYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIV 549 (932)
Q Consensus 470 G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv 549 (932)
.+-..++..+.++.+ .+++++... +.++++..|.+|++|+++....... ....+. ..|+....+++++
T Consensus 105 ~~l~~~l~~f~~~~P-~i~i~l~~~---------~~~~~~~~l~~g~~Dlai~~~~~~~-~~~~l~-~~~L~~~~~~~v~ 172 (305)
T 3fxq_A 105 AALPLALASFAREFP-DVTVNVRDG---------MYPAVSPQLRDGTLDFALTAAHKHD-IDTDLE-AQPLYVSDVVIVG 172 (305)
T ss_dssp THHHHHHHHHHHHCT-TCEEEEEEC---------CTTTTHHHHHHTSSSEEEEECCGGG-SCTTEE-EEEEEECCEEEEE
T ss_pred HHHHHHHHHHHHHCC-CCEEEEEEC---------CHHHHHHHHHcCCCCEEEecCCCCC-CccCee-EEEeecCcEEEEE
Confidence 345678889999887 366666553 2467889999999999986432211 012222 3678888888888
Q ss_pred EccCCCCCCceEEeccCchhHHHHHHHHHHHHHHHHHhhhcccCCCCCCcccccccchhhhHHHHhhhcCcccccccchh
Q 002352 550 PIKDNKKKNAWVFLQPLTLDLWVTSGCFFIFIGFVVWVLEHRVNEDFRGPAQHQVGTSFWFSFSTMVFSHRERVISNLAR 629 (932)
Q Consensus 550 ~~~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R 629 (932)
+...+..
T Consensus 173 ~~~hpla------------------------------------------------------------------------- 179 (305)
T 3fxq_A 173 QRQHPMA------------------------------------------------------------------------- 179 (305)
T ss_dssp ETTCTTT-------------------------------------------------------------------------
T ss_pred cCCCCCC-------------------------------------------------------------------------
Confidence 8653211
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCCcEEEEc-C----hhHHHHHHhcCCC-cccccccCC
Q 002352 630 FVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGDNVGYRK-D----SFVFGILKQLGFD-EKKLIAYSS 703 (932)
Q Consensus 630 ~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~vg~~~-~----s~~~~~l~~~~~~-~~~~~~~~~ 703 (932)
.-.+++||. +.++.... + .....++.+.+.+ .......++
T Consensus 180 --------------------------------~~~~~~dL~--~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 225 (305)
T 3fxq_A 180 --------------------------------NATRLAELQ--ECRWAFSSAPRGPGAIIRNAFARYGLPEPKLGLVCES 225 (305)
T ss_dssp --------------------------------TCCSGGGGT--TSEEEEECCTTSTTHHHHHHHHHTTCCCCEEEEEECC
T ss_pred --------------------------------CCCCHHHHh--CCCeEeeCCCCCHHHHHHHHHHHcCCCCCCceEEeCC
Confidence 013678887 55554432 2 2345666666662 223345678
Q ss_pred HHHHHHHhhcccCCCceeEEEecccccccccccCCcceEEec--ccccccceEEEecCCCCChHHHHHHHHhhh
Q 002352 704 PEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYCSKYTLIE--RTFETAGFGFAFPLHSPLVPEVSRAILNVT 775 (932)
Q Consensus 704 ~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~k~s~l~~~in~~il~l~ 775 (932)
.+...+.+..|. .-+++-+.....+. . ...+..+. .......++++.+++.+....+...+..+.
T Consensus 226 ~~~~~~~v~~g~----gia~lp~~~~~~~~-~--~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~ 292 (305)
T 3fxq_A 226 FLALPGVVAHSD----LLTTMPRTLYERNA-F--KDQLCSIPLQDALPNPTIYVLRRHDLPVTPAAAGLIRWIQ 292 (305)
T ss_dssp TTTHHHHHHTSS----CEEEEEHHHHHSST-T--GGGEEECCCSSCCCCCEEEEEEETTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC----EEEEeeHHHHhhhh-h--cCCEEEeeCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence 888899999987 45555443222111 1 12344443 233345677888888777666666655443
No 192
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=91.48 E-value=3.4 Score=40.74 Aligned_cols=69 Identities=12% Similarity=0.234 Sum_probs=48.3
Q ss_pred EEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeeccccccccccccccccCeEEEE
Q 002352 470 GYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIV 549 (932)
Q Consensus 470 G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv 549 (932)
.+-..++..+.++.+ .+++++... +...++.+|.+|++|+++..... ....+. +.+.....+++++
T Consensus 43 ~~l~~~l~~f~~~~P-~v~l~~~~~---------~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l~-~~~l~~~~~~~v~ 108 (238)
T 2hxr_A 43 YFIGPLMADFYARYP-SITLQLQEM---------SQEKIEDMLCRDELDVGIAFAPV---HSPELE-AIPLLTESLALVV 108 (238)
T ss_dssp TTHHHHHHHHHHHCT-TSCEEEEEC---------CHHHHHHHHHTTSCSEEEEESSC---CCTTEE-EEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCC-CcEEEEEEC---------CHHHHHHHHHcCCCcEEEEcCCC---Ccccce-eeeeccCcEEEEE
Confidence 345678889999887 466776553 36789999999999999863221 122233 3577888888888
Q ss_pred Ecc
Q 002352 550 PIK 552 (932)
Q Consensus 550 ~~~ 552 (932)
++.
T Consensus 109 ~~~ 111 (238)
T 2hxr_A 109 AQH 111 (238)
T ss_dssp ETT
T ss_pred cCC
Confidence 865
No 193
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=91.45 E-value=0.96 Score=47.30 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=42.3
Q ss_pred CCCCCHHHHHhCCCcEEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEec
Q 002352 661 PTITDFQMLIKSGDNVGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDE 726 (932)
Q Consensus 661 ~~i~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~ 726 (932)
.+|++++||. |+++.+. ++.....++..+... + .-...|...+|++|. +|+....
T Consensus 129 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~~~lGa~p---v-~~~~~E~y~ALq~G~----vDg~~~~ 183 (301)
T 2pfy_A 129 KPVAALADLK--GTRFRAY-SASTSHMAALMGAVP---T-TVQTPEVPQAFSTGV----IDAMLTS 183 (301)
T ss_dssp SCCSSGGGGT--TCEEEEC-SHHHHHHHHHTTSEE---E-ECCGGGHHHHHHTTS----CSBEEEC
T ss_pred CCCCCHHHhC--CCEEeec-ChhHHHHHHHcCCcc---e-eccHHHHHHHHhcce----eeeEecC
Confidence 4699999999 9999886 666667888877532 2 225678899999999 9998554
No 194
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=91.23 E-value=2.3 Score=42.49 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=62.9
Q ss_pred CCCHHHHHhCCCcEEEEc------ChhHHHHHHhcCCC---cccccccCCHHHHHHHhhcccCCCceeEEEecccccccc
Q 002352 663 ITDFQMLIKSGDNVGYRK------DSFVFGILKQLGFD---EKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPF 733 (932)
Q Consensus 663 i~s~~dL~~~~~~vg~~~------~s~~~~~l~~~~~~---~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~ 733 (932)
++++.||.+ +.++++.. |.+....|++.+.- ..++....+..+....+.+|+ +++.+.-.....
T Consensus 107 ~~~l~~l~~-~~~iai~~p~~~p~G~~a~~~l~~~g~~~~l~~~~~~~~~~~~~~~~v~~Ge----~d~gi~~~s~a~-- 179 (237)
T 3r26_A 107 KTNWTSLLN-GGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNE----APLGIVYGSDAV-- 179 (237)
T ss_dssp TCCHHHHHT-TCCEEEECTTTCHHHHHHHHHHHHTTCHHHHGGGEEEESSHHHHHHHHHTTS----SSEEEEEHHHHH--
T ss_pred hHhHHHhcC-CCeEEEeCCCCCChHHHHHHHHHHcCCHHHhhhcEEecCCHHHHHHHHHcCC----CCEEEEEecccc--
Confidence 456777764 35777753 33445667665531 224555567788899999999 777765432221
Q ss_pred cccCCcceEEe---cc-cccccceEEEecCCCCChHHHHHHHHhhhccchHHHHHHHh
Q 002352 734 IGQYCSKYTLI---ER-TFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEW 787 (932)
Q Consensus 734 ~~~~~~~l~~~---~~-~~~~~~~~~~~~k~s~l~~~in~~il~l~e~G~~~~~~~~~ 787 (932)
.. +++.++ ++ ......+.+++.|+++- +.-.+.+.-| .+..-+++.+++
T Consensus 180 -~~--~~~~~v~~~P~~~~~~~~~~~ai~k~~~~-~~A~~Fi~fl-~S~eaq~i~~~~ 232 (237)
T 3r26_A 180 -AS--KGVKVVATFPEDSHKKVEYPVAVVEGHNN-ATVKAFYDYL-KGPQAAEIFKRY 232 (237)
T ss_dssp -HC--SSEEEEEECCGGGSCCEEEEEEEBTTCCS-HHHHHHHHHH-TSHHHHHHHHHT
T ss_pred -cC--CCCeEEEECCcccCCeeeeeEEEEcCCCC-HHHHHHHHHH-cCHHHHHHHHHc
Confidence 11 123332 33 22344567888898876 4444444433 343445555554
No 195
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=91.21 E-value=0.39 Score=44.21 Aligned_cols=54 Identities=13% Similarity=0.229 Sum_probs=46.7
Q ss_pred ccccchhhhHHHHhhhcC-cc-cccccchhhhHHHHHHHHHhhhhhhhhhhhhhhh
Q 002352 602 HQVGTSFWFSFSTMVFSH-RE-RVISNLARFVMIVWYFVVLILTQSYTASLSSLLT 655 (932)
Q Consensus 602 ~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt 655 (932)
.++.+++|+++.++...| ++ .|.+..+|++.++|.++++.+.....+++.+.+.
T Consensus 51 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~ 106 (148)
T 3vou_A 51 LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQ 106 (148)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999877 44 5688999999999999999999999998887654
No 196
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=91.06 E-value=0.96 Score=47.33 Aligned_cols=56 Identities=13% Similarity=0.070 Sum_probs=42.9
Q ss_pred CCCCCHHHHHhCCCcEEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecc
Q 002352 661 PTITDFQMLIKSGDNVGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEI 727 (932)
Q Consensus 661 ~~i~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~ 727 (932)
.+|++++||. |+++.+. ++.....++.++... ..-...|...+|++|. +|+.....
T Consensus 128 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~~~lGa~p----v~~~~~E~y~ALq~G~----vDg~~~~~ 183 (301)
T 2pfz_A 128 RDIKQVSDMK--GLKWRAY-SPVTAKIAELVGAQP----VTVQQAELAQAMATGV----IDSYMSSG 183 (301)
T ss_dssp SCCSSGGGGT--TCEEEES-SHHHHHHHHHHTCEE----EECCGGGHHHHHHTTS----CSEEEECH
T ss_pred CCCCChHHhc--CCEEecC-ChhHHHHHHHcCCcc----eecCHHHHHHHHhcCe----eeEEecCc
Confidence 4699999999 9999886 666667888877532 2235678899999999 99985543
No 197
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=91.01 E-value=2.1 Score=43.97 Aligned_cols=69 Identities=7% Similarity=0.076 Sum_probs=47.6
Q ss_pred EEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeeccccccccccccccccCeEEEE
Q 002352 470 GYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIV 549 (932)
Q Consensus 470 G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv 549 (932)
.+-.+++..+.++.+ .+++++... +...++.+|.+|++|+++...... ...+. ..|.....+++++
T Consensus 104 ~~l~~~l~~f~~~~P-~i~l~~~~~---------~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~~~v~ 169 (294)
T 1ixc_A 104 RSLPLLLRAFLTSTP-TATVSLTHM---------TKDEQVEGLLAGTIHVGFSRFFPR---HPGIE-IVNIAQEDLYLAV 169 (294)
T ss_dssp THHHHHHHHHHHHCT-TEEEEEEEC---------CHHHHHHHHHHTSCSEEEESCCCC---CTTEE-EEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCC-CcEEEEEeC---------CHHHHHHHHHCCCccEEEEecCCC---CCCce-EEEEeeccEEEEE
Confidence 345688888988886 356665542 367899999999999998643221 22232 3577788888888
Q ss_pred Ecc
Q 002352 550 PIK 552 (932)
Q Consensus 550 ~~~ 552 (932)
+..
T Consensus 170 ~~~ 172 (294)
T 1ixc_A 170 HRS 172 (294)
T ss_dssp EGG
T ss_pred eCC
Confidence 765
No 198
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=90.94 E-value=0.49 Score=49.18 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=51.2
Q ss_pred cccccccchhhhHHHHhhhcC-cc-cccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccc
Q 002352 599 PAQHQVGTSFWFSFSTMVFSH-RE-RVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQ 658 (932)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~ 658 (932)
....++.+++||++.++...| ++ .|.+..+|++.+++.++++++.+..++.+++.++.+.
T Consensus 78 ~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~ 139 (301)
T 1xl4_A 78 ARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPT 139 (301)
T ss_dssp SCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344678899999999999766 43 5688999999999999999999999999999987653
No 199
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=90.89 E-value=0.35 Score=53.55 Aligned_cols=106 Identities=13% Similarity=0.115 Sum_probs=61.8
Q ss_pred HHHH-HhCCC--cEEEE-cChhHH----HHHHhcCCCc---ccccccCCHHHHHHHhhcccCCCceeEEEeccccccccc
Q 002352 666 FQML-IKSGD--NVGYR-KDSFVF----GILKQLGFDE---KKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFI 734 (932)
Q Consensus 666 ~~dL-~~~~~--~vg~~-~~s~~~----~~l~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~ 734 (932)
++|| .+.|+ +||+. .++... .+|++.+.+. .+++.+ ...+...+|.+|+ +||++...++.....
T Consensus 153 i~dL~k~~GK~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~~DV~~v~~-~~~~~~~aL~~G~----iDa~~~~eP~~~~a~ 227 (429)
T 2i49_A 153 IKGFNKTNGRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDTDIDLLAV-PPAETVQGMRNGT----MDAFSTGDPWPYRIV 227 (429)
T ss_dssp HHTHHHHHSSCCEEEESSTTSHHHHHHHHHHHHTTCCTTTTSEEEEC-CHHHHHHHHHHTC----CCEEEEETTHHHHHH
T ss_pred HHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCCcEEEEEC-ChHHHHHHHHcCC----ccEEEeccchHHHHH
Confidence 6888 65687 99996 566543 3455556643 344444 6688899999999 999988777765544
Q ss_pred ccCCcceEE-ecccccc-cceEEEecCC----CC-----ChHHHHHHHHhhhc
Q 002352 735 GQYCSKYTL-IERTFET-AGFGFAFPLH----SP-----LVPEVSRAILNVTE 776 (932)
Q Consensus 735 ~~~~~~l~~-~~~~~~~-~~~~~~~~k~----s~-----l~~~in~~il~l~e 776 (932)
.+....... ..+.... ....+++++. .| ++..+.++...+.+
T Consensus 228 ~~g~g~~~~~~~~~~~~~~~~vl~~~~~~~~~~Pe~v~~~~~A~~~A~~~~~~ 280 (429)
T 2i49_A 228 TENIGYMAGLTAQIWPYHPEEYLAIRADWVDKNPKATKALLKGIMEAQQWIDD 280 (429)
T ss_dssp HTTSCEEEEEHHHHSTTCCCCEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHTS
T ss_pred HCCCCEEEEechHhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 443221111 1222222 2345666643 22 44445555555554
No 200
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=90.83 E-value=1.3 Score=47.82 Aligned_cols=57 Identities=19% Similarity=0.209 Sum_probs=41.8
Q ss_pred CCCCCHHHHHhCCCcEEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccc
Q 002352 661 PTITDFQMLIKSGDNVGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPY 729 (932)
Q Consensus 661 ~~i~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~ 729 (932)
.+|++++||. |++|.+. + .....++..+.... .-...|...+|++|. +|+.....+.
T Consensus 163 ~pI~s~~DLk--G~KiR~~-~-~~~~~~~~lGa~pv----~~~~~e~y~ALq~G~----VDg~~~~~p~ 219 (365)
T 2hzl_A 163 REINTVADMQ--GLKMRVG-G-FAGKVMERLGVVPQ----QIAGGDIYPALEKGT----IDATEWVGPY 219 (365)
T ss_dssp SCCCSTGGGT--TCEEECC-T-THHHHHHTTTCEEE----CCCTTSHHHHHHHTS----CSEECCSCHH
T ss_pred CCCCChHHhC--CCEEecC-C-cHHHHHHHcCCcce----ecCHHHHHHHHhCCC----cceeeccCcc
Confidence 4699999999 9999887 5 45667787765322 224457789999999 9998755444
No 201
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=90.62 E-value=2.3 Score=44.27 Aligned_cols=103 Identities=5% Similarity=-0.057 Sum_probs=56.4
Q ss_pred CCHHHHHhCCCcEEEEc-C----hhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCC
Q 002352 664 TDFQMLIKSGDNVGYRK-D----SFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYC 738 (932)
Q Consensus 664 ~s~~dL~~~~~~vg~~~-~----s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~ 738 (932)
-+++||. +.++.... + .....++.+.+.........++.+...+.+..|. ..+++-+... ......
T Consensus 193 i~~~dL~--~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g~----Gia~lp~~~~-~~~~~~-- 263 (310)
T 2esn_A 193 PTLEGYL--AERHAVVTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGSTD----FLLTAPRHAA-RALAEA-- 263 (310)
T ss_dssp CCHHHHH--TSEEEEECTTCCSSCHHHHHHHHTTCCCEEEEEESCHHHHHHHHHTSS----CEEEEEHHHH-HHHHHH--
T ss_pred CCHHHHh--cCCcEEEeCCCCcccHHHHHHHhCCCCeeEEEeCCCHHHHHHHHhcCC----eEEEcHHHHH-HHHhhc--
Confidence 4689998 55544432 2 2345667766655444456788899999999987 4555544322 211111
Q ss_pred cceEEec--ccccccceEEEecCCCCChHHHHHHHHhhh
Q 002352 739 SKYTLIE--RTFETAGFGFAFPLHSPLVPEVSRAILNVT 775 (932)
Q Consensus 739 ~~l~~~~--~~~~~~~~~~~~~k~s~l~~~in~~il~l~ 775 (932)
..+..+. .......++++.+++.+....+...+..+.
T Consensus 264 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 302 (310)
T 2esn_A 264 AGLALYPAPFDIPPYVLRLYSHVQHVGRDAHAWMIGQLK 302 (310)
T ss_dssp HTEEEECCSSCCCCEEEEEEEECC--CCHHHHHHHHHSC
T ss_pred CCceEecCCCCCCCeeEEEEEeCcccCCHHHHHHHHHHH
Confidence 1243332 222345577788887766555554444433
No 202
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=90.37 E-value=0.83 Score=48.79 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=43.2
Q ss_pred CCCHHHHHhCCCcEEEEcCh---hHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccc
Q 002352 663 ITDFQMLIKSGDNVGYRKDS---FVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTK 731 (932)
Q Consensus 663 i~s~~dL~~~~~~vg~~~~s---~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~ 731 (932)
+++++||. |++||+..+. ....+|++.+.+...+.......+...++.+|+ +||.+.-.++..
T Consensus 103 ~~~~~dLk--GK~ig~~~~~~~~~l~~~L~~~Gl~~~dv~~v~~~~~~~~al~~G~----vDa~~~~~p~~~ 168 (342)
T 4esw_A 103 TSDFQSLK--GKRIGYVGEFGKIQVDELTKHYGMTPDDYVAVRCGMNVAKYILEGT----IDCGIGIECIQQ 168 (342)
T ss_dssp CSSGGGGT--TCEEEESSSHHHHHHHHHHGGGTCCGGGSEEEECGGGHHHHHHHTS----SSEEEEETTTHH
T ss_pred cCCHHHhC--CCEEEecCCchHHHHHHHHHHcCCChhheEEecCCHHHHHHHHcCC----CCEEEEeccchH
Confidence 67899999 9999985432 223445566766665555554556678899999 999887655543
No 203
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=89.87 E-value=1.4 Score=44.72 Aligned_cols=70 Identities=11% Similarity=0.075 Sum_probs=43.1
Q ss_pred HHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCc-ccEEEeeeeeeccc---ccccc--ccccccccCeE
Q 002352 473 IAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGK-FDAVVGDTTILANR---SKFVE--FTLPYTESGVS 546 (932)
Q Consensus 473 ~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~-~D~~~~~~~it~~R---~~~vd--fs~p~~~~~~~ 546 (932)
-+|.+.+.++.|.++++.+ |+-..++.+|.+|. +|+.++.-.-..++ ...++ -..+|....++
T Consensus 38 ~~l~~~Fe~~~gi~V~~~~-----------~~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~~~lv 106 (253)
T 3gzg_A 38 DEAATAYEKATGTPVRVSY-----------AASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNTLV 106 (253)
T ss_dssp HHHHHHHHHHHSCCEEEEE-----------ECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEECEE
T ss_pred HHHHHHHHHHhCCeEEEEE-----------CChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEeeEEE
Confidence 3677777777785544433 23467889999886 99987742111111 12221 22467778899
Q ss_pred EEEEccC
Q 002352 547 MIVPIKD 553 (932)
Q Consensus 547 ~lv~~~~ 553 (932)
+++++..
T Consensus 107 l~~~~~~ 113 (253)
T 3gzg_A 107 LVAPASS 113 (253)
T ss_dssp EEEETTC
T ss_pred EEEECCC
Confidence 9998764
No 204
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=88.92 E-value=8.7 Score=39.93 Aligned_cols=69 Identities=12% Similarity=0.218 Sum_probs=47.4
Q ss_pred EEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeeccccccccccccccccCeEEEE
Q 002352 470 GYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIV 549 (932)
Q Consensus 470 G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv 549 (932)
.+-..++..+.++.+ .+++++... +..+++.+|.+|++|+++...... ...+. ..|.....+++++
T Consensus 103 ~~l~~~l~~f~~~~P-~v~l~l~~~---------~~~~~~~~l~~g~~Dlai~~~~~~---~~~l~-~~~L~~~~~~~v~ 168 (313)
T 2h98_A 103 GLLPEIIYLFRQQNP-EIHIELIEC---------GTKDQINALKQGKIDLGFGRLKIT---DPAIR-RIMLHKEQLKLAI 168 (313)
T ss_dssp TTHHHHHHHHHHHCT-TSEEEEEEC---------CHHHHHHHHHHTSCSEEEESSCCC---CTTEE-EEEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHCC-CeEEEEEeC---------ChHHHHHHHHcCCCCEEEEeCCCC---CCCee-EEEeeeCcEEEEE
Confidence 345688889998886 356666542 467899999999999998643221 12222 3577778888888
Q ss_pred Ecc
Q 002352 550 PIK 552 (932)
Q Consensus 550 ~~~ 552 (932)
+..
T Consensus 169 ~~~ 171 (313)
T 2h98_A 169 HKH 171 (313)
T ss_dssp ETT
T ss_pred cCC
Confidence 754
No 205
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=88.65 E-value=0.46 Score=51.14 Aligned_cols=74 Identities=9% Similarity=0.159 Sum_probs=57.9
Q ss_pred HHHHHHHHhhhcccCCCCCCcccccccchhhhHHHHhhhcC-cc-cccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhc
Q 002352 579 IFIGFVVWVLEHRVNEDFRGPAQHQVGTSFWFSFSTMVFSH-RE-RVISNLARFVMIVWYFVVLILTQSYTASLSSLLTV 656 (932)
Q Consensus 579 i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 656 (932)
++.+++.+.+++..+++ ...++.+++|+++.+++..| ++ .|.+..+|++.++++++++++.+...+.+++.+..
T Consensus 141 ~~~a~~~~~~e~~~~~~----~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 216 (355)
T 3beh_A 141 FAVALAAYVIERDIQPE----KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQ 216 (355)
T ss_dssp HHHHHHHHHHHTTTCHH----HHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCc----ccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777643221 12467899999999999776 43 56889999999999999999999999999988754
No 206
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=88.54 E-value=0.29 Score=52.34 Aligned_cols=122 Identities=9% Similarity=0.044 Sum_probs=71.6
Q ss_pred cccchhhhHHHHhhhcC-cc-cccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHHHHhCCCcEEEEc
Q 002352 603 QVGTSFWFSFSTMVFSH-RE-RVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQMLIKSGDNVGYRK 680 (932)
Q Consensus 603 ~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~vg~~~ 680 (932)
++.+++||++.++...| ++ .|.+..+|++.++|.++++++.....+.+++.++.......... ....+ ...+.+..
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~viI~G 122 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGL-IDVAK-SRHVVICG 122 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-------------------CEEEEES
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcc-cCCEEEEC
Confidence 68899999999999776 33 56888999999999999999999999999999987655432221 11211 22344433
Q ss_pred -ChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEeccccccc
Q 002352 681 -DSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKP 732 (932)
Q Consensus 681 -~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~ 732 (932)
|..-....+....... +...+..++..+ +.... ..++..|..-.+.
T Consensus 123 ~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~----~~~i~gd~~~~~~ 169 (336)
T 1lnq_A 123 WSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSG----ANFVHGDPTRVSD 169 (336)
T ss_dssp CCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTT----CEEEESCTTSHHH
T ss_pred CcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCC----cEEEEeCCCCHHH
Confidence 3333444443322223 555566666666 54432 6666666543333
No 207
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=87.64 E-value=1.3 Score=46.48 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=50.2
Q ss_pred cccchhhhHHHHhhhcC-c-ccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhcccc
Q 002352 603 QVGTSFWFSFSTMVFSH-R-ERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQL 659 (932)
Q Consensus 603 ~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~ 659 (932)
++.+++||++.++...| + ..|.+..+|++.++++++++++.+.-++.+++.++.+..
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~ 136 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKK 136 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999776 3 356889999999999999999999999999999987643
No 208
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=86.89 E-value=4.6 Score=42.11 Aligned_cols=68 Identities=9% Similarity=0.029 Sum_probs=45.2
Q ss_pred EeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeeccccccccccccccccCeEEEEE
Q 002352 471 YSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVP 550 (932)
Q Consensus 471 ~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~ 550 (932)
+-..++..+.++.+ .+.+++... +..+++.+|.+|++|+++..... ....+. ..|+....++++++
T Consensus 119 ~l~~~l~~f~~~~P-~v~l~l~~~---------~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l~-~~~l~~~~~~~v~~ 184 (315)
T 1uth_A 119 FMPPLMEALAQRAP-HIQISTLRP---------NAGNLKEDMESGAVDLALGLLPE---LQTGFF-QRRLFRHRYVCMFR 184 (315)
T ss_dssp HHHHHHHHHHHHCT-TCEEEEECT---------TSSCHHHHHHHTSCCEEEECCTT---CCTTEE-EEEEEEECEEEEEE
T ss_pred HHHHHHHHHHHHCC-CcEEEEEeC---------CcccHHHHHHCCCCCEEEecCCC---CCCCce-EEEeeccceEEEEe
Confidence 44578888888886 356665442 24578999999999999864321 112222 35777888888887
Q ss_pred cc
Q 002352 551 IK 552 (932)
Q Consensus 551 ~~ 552 (932)
..
T Consensus 185 ~~ 186 (315)
T 1uth_A 185 KD 186 (315)
T ss_dssp TT
T ss_pred CC
Confidence 55
No 209
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=86.61 E-value=14 Score=38.08 Aligned_cols=69 Identities=12% Similarity=0.110 Sum_probs=47.5
Q ss_pred EEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeeccccccccccccccccCeEEEE
Q 002352 470 GYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIV 549 (932)
Q Consensus 470 G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv 549 (932)
.+-..++..+.++.+ .+++++.. ++..+++.+|.+|++|+++...... ...+. +.|.....+++++
T Consensus 103 ~~l~~~l~~f~~~~P-~v~i~l~~---------~~~~~~~~~l~~g~~Dlai~~~~~~---~~~l~-~~~L~~~~~~~v~ 168 (312)
T 2h9b_A 103 GLLPRIIHLYRQAHP-NLRIELYE---------MGTKAQTEALKEGRIDAGFGRLKIS---DPAIK-HSLLRNERLMVAV 168 (312)
T ss_dssp TTHHHHHHHHHHTCT-TCEEEEEE---------CCHHHHHHHHHTTSCSEEEESSCCC---CTTEE-EEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHCC-CcEEEEEe---------CCHHHHHHHHHcCCCCEEEEeCCCC---CCCce-EEEeecceEEEEE
Confidence 345688888988876 35666654 2468899999999999998643221 12222 3577778888888
Q ss_pred Ecc
Q 002352 550 PIK 552 (932)
Q Consensus 550 ~~~ 552 (932)
+..
T Consensus 169 ~~~ 171 (312)
T 2h9b_A 169 HAS 171 (312)
T ss_dssp ETT
T ss_pred cCC
Confidence 755
No 210
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=84.82 E-value=13 Score=37.04 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=28.1
Q ss_pred HHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEE
Q 002352 476 FKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVV 521 (932)
Q Consensus 476 ~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~ 521 (932)
++...++-| ++++++.+. +|.....+|.+|++|+..
T Consensus 21 ~~~~~~~~G--l~ve~~~f~--------d~~~~n~AL~~G~iD~n~ 56 (241)
T 1xs5_A 21 AKEEVKKQH--IELRIVEFT--------NYVALNEAVMRGDILMNF 56 (241)
T ss_dssp HHHHHHTTT--EEEEEEECS--------CHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHcC--CeEEEEEcC--------ChHHHHHHHHcCCCCEec
Confidence 444566667 567777776 589999999999999964
No 211
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=84.42 E-value=8.6 Score=37.03 Aligned_cols=103 Identities=9% Similarity=-0.035 Sum_probs=58.4
Q ss_pred CCHHHHHhCCCcEE-EEcChhHHHHHHhcCCCc----ccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCC
Q 002352 664 TDFQMLIKSGDNVG-YRKDSFVFGILKQLGFDE----KKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYC 738 (932)
Q Consensus 664 ~s~~dL~~~~~~vg-~~~~s~~~~~l~~~~~~~----~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~ 738 (932)
-+++||. +.++. ...+.....++.+.+... ......++.+...+.+..|. .-+++-+.....+......
T Consensus 96 ~~~~~L~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~----Gi~~lp~~~~~~~~~~~~l 169 (219)
T 3kos_A 96 QTPADIL--KFPLLRSYRRDEWALWMQTVGEAPPSPTHNVMVFDSSVTMLEAAQAGM----GVAIAPVRMFTHLLSSERI 169 (219)
T ss_dssp SSGGGGG--GSCEEEESCTTHHHHHHHHTTCCCCCTTSCEEEESCHHHHHHHHHTTS----CBEEEEGGGCHHHHHTTSS
T ss_pred CCHHHHh--cCceeccCCccCHHHHHHHcCCCCCccccceeEEccHHHHHHHHHcCC----CeEeehHHhhHHHHHcCCe
Confidence 4688888 44343 344555666666543322 12246788899999999998 5566655433332222111
Q ss_pred cceEEecccccccceEEEecCCCCChHHHHHHHHhh
Q 002352 739 SKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNV 774 (932)
Q Consensus 739 ~~l~~~~~~~~~~~~~~~~~k~s~l~~~in~~il~l 774 (932)
.....+......++++.+++.+....+...+..+
T Consensus 170 --~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 203 (219)
T 3kos_A 170 --VQPFLTQIDLGSYWITRLQSRPETPAMREFSRWL 203 (219)
T ss_dssp --BCCCCCCBCSCEEEEEEETTSCCCHHHHHHHHHH
T ss_pred --eccccCCccCCcEEEEecccccCCHHHHHHHHHH
Confidence 1122223334467788888877766666655444
No 212
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=82.87 E-value=2.1 Score=48.24 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=53.8
Q ss_pred HHHHHHhhhcccCCCCCCcccccccchhhhHHHHhhhcC-c-ccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhc
Q 002352 581 IGFVVWVLEHRVNEDFRGPAQHQVGTSFWFSFSTMVFSH-R-ERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTV 656 (932)
Q Consensus 581 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 656 (932)
.+.+++..+... ......++.+++|+++.+++..| + -.|.+..+|++.++++++++++.+.+.|.+.+.+..
T Consensus 357 f~~~~~~~e~~~----~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 357 FSSAVYFAEADE----RDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp HHHHHHHHHTTC----TTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHhhhheeeccC----CCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555422 12233578899999999999776 3 356788899999999999999999999999876543
No 213
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=81.44 E-value=14 Score=38.56 Aligned_cols=126 Identities=12% Similarity=0.067 Sum_probs=77.5
Q ss_pred EEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChhHHHHH
Q 002352 20 NVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSMQTNFI 99 (932)
Q Consensus 20 ~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~~a~~v 99 (932)
+||++..........-..|+..++++.|-. .++.+....+-.++..+.+++.+|+.+ ++.+|+..... .+..+
T Consensus 131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~a~~ll~~-~~daI~~~~d~-~a~Gv 203 (318)
T 2fqx_A 131 AVGFIVGMELGMMPLFEAGFEAGVKAVDPD-----IQVVVEVANTFSDPQKGQALAAKLYDS-GVNVIFQVAGG-TGNGV 203 (318)
T ss_dssp EEEEEESCCSTTTHHHHHHHHHHHHHHCTT-----CEEEEEECSCSSCHHHHHHHHHHHHHT-TCCEEEEECGG-GHHHH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHHCCC-----CEEEEEEccCccCHHHHHHHHHHHHHC-CCcEEEECCCC-CchHH
Confidence 789997665444455688999999987643 344444444434788889999999986 79999975443 33333
Q ss_pred HHhcCC-----CCccEEecccCCCCccCC---CCCceEecccCchhHHHHHHHHHHHcCCe
Q 002352 100 IQLGNK-----SQVPILSFSATSPSLTSI---RSSYFFRGSLNDSSQVGAITAIIKAFGWR 152 (932)
Q Consensus 100 ~~~~~~-----~~iP~Is~~a~~~~l~~~---~~p~~~r~~ps~~~~~~ai~~~l~~~~w~ 152 (932)
...+.+ .++-+|.+.......... ..|.+-.+..+-...+...++.+..-.|+
T Consensus 204 ~~a~~e~g~~P~dv~viG~D~~~~~~~~~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~ 264 (318)
T 2fqx_A 204 IKEARDRRLNGQDVWVIGVDRDQYMDGVYDGSKSVVLTSMVKRADVAAERISKMAYDGSFP 264 (318)
T ss_dssp HHHHHHHHHTTCCCEEEEEESCCGGGGBCSSSCBSEEEEEEECHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhhhhccCCcEEEEEecchhhhccccCCCCeEEEEEEEEHHHHHHHHHHHHHcCCCC
Confidence 333433 678889887643222100 23445555555555566666666555553
No 214
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=80.85 E-value=3.1 Score=42.72 Aligned_cols=113 Identities=10% Similarity=0.087 Sum_probs=60.3
Q ss_pred CCCHHHHHhCCC----cEEEEcChh-----HHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccc
Q 002352 663 ITDFQMLIKSGD----NVGYRKDSF-----VFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPF 733 (932)
Q Consensus 663 i~s~~dL~~~~~----~vg~~~~s~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~ 733 (932)
|+|++||. ++ .+|...+.. ...+++..+++...+... +..+...++.+|+ ++++..-.+....
T Consensus 125 i~si~DL~--g~~~~~~~g~~~~~~~~~~g~~~~~~~yGl~~~~~~~~-~~~~~~~Al~~g~----vd~~~~~~p~~~~- 196 (275)
T 1sw5_A 125 VEKISDLA--EFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQM-EPTLMYEAIKNKQ----VDVIPAYTTDSRV- 196 (275)
T ss_dssp CCBGGGGT--TTGGGCEEEECHHHHHSTTSHHHHHHHHTCCCSEEEEC-CGGGHHHHHHTTS----CSEEEEETTCHHH-
T ss_pred CCcHHHHH--hhhcceEeccCcccccccchHHHHHHhcCCCcccccCC-CHHHHHHHHHcCC----CeEEEEeCCCcch-
Confidence 89999998 55 455433211 122555556654444444 5667899999999 9998876654432
Q ss_pred cccCCcceEEeccc---ccccceEEEecCCCCChHHHHHHHHhhh---ccchHHHHHHH
Q 002352 734 IGQYCSKYTLIERT---FETAGFGFAFPLHSPLVPEVSRAILNVT---EGNKMKEIEDE 786 (932)
Q Consensus 734 ~~~~~~~l~~~~~~---~~~~~~~~~~~k~s~l~~~in~~il~l~---e~G~~~~~~~~ 786 (932)
.++ +++++.+. +.......+++++..=.+.+-+.|.++. ....+.++..+
T Consensus 197 -~~~--~l~~L~d~~~~~~~~~~~~v~~~~~~~~P~~~~~l~~l~~~l~~~~~~~l~~~ 252 (275)
T 1sw5_A 197 -DLF--NLKILEDDKGALPPYDAIIIVNGNTAKDEKLISVLKLLEDRIDTDTMRALNYQ 252 (275)
T ss_dssp -HHT--TEEECBCTTCCSCCCEEEEEECTTGGGCHHHHHHHHTTTTCCCHHHHHHHHHH
T ss_pred -hcC--CeEEccCCcccCCccceeeeeehhhccChHHHHHHHHHHccCCHHHHHHHHHH
Confidence 222 24455332 2223334455554210034555665553 33344444433
No 215
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=80.12 E-value=10 Score=40.94 Aligned_cols=88 Identities=11% Similarity=0.026 Sum_probs=64.4
Q ss_pred HHHHHHHHcCCeEEEEEEEcCCcCC--ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeCh
Q 002352 141 AITAIIKAFGWREAVPIYVDNQYGE--EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP 218 (932)
Q Consensus 141 ai~~~l~~~~w~~v~ii~~d~~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~ 218 (932)
.+.++++.+|.+++.+|+....... +..+.+.+.|++.|+++..-..+..+++.+.+.+.+..+++.++|+||-.+.+
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG 102 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGGG 102 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEESH
T ss_pred HHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 3667778888899999987665555 57899999999999876433344555677788888888999999999977665
Q ss_pred h--hHHHHHHHH
Q 002352 219 S--LGSRIFEKA 228 (932)
Q Consensus 219 ~--~~~~l~~~a 228 (932)
. ++..++...
T Consensus 103 sv~D~aK~iA~~ 114 (387)
T 3bfj_A 103 SPHDCGKGIGIA 114 (387)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhhHHHHHHHH
Confidence 4 455555544
No 216
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=79.91 E-value=2.1 Score=43.68 Aligned_cols=67 Identities=12% Similarity=0.137 Sum_probs=50.2
Q ss_pred ccccchhhhHHHHhhhcC-cc-ccccc-------chhhhHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCCHHH
Q 002352 602 HQVGTSFWFSFSTMVFSH-RE-RVISN-------LARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQPTITDFQM 668 (932)
Q Consensus 602 ~~~~~~~~~~~~~l~~~~-~~-~~~s~-------~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~d 668 (932)
..+.+++|+++.++...| ++ .|.+. ..|++.++|+++++.+.....+.+++.+...+....+..-+|
T Consensus 200 ~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~~~~~~ 275 (280)
T 3ukm_A 200 WNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKKD 275 (280)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTC----
T ss_pred CchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 457899999999999776 33 34443 369999999999999999999999999887666554444333
No 217
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=78.55 E-value=31 Score=34.73 Aligned_cols=71 Identities=8% Similarity=0.057 Sum_probs=46.4
Q ss_pred EeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecccc-ccccccccccccCeEEEE
Q 002352 471 YSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRS-KFVEFTLPYTESGVSMIV 549 (932)
Q Consensus 471 ~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~-~~vdfs~p~~~~~~~~lv 549 (932)
+-.++++.+.++.+ .+++++.. ++..+++.+|.+|++|+++........+. ..+. ..|+....+++++
T Consensus 41 ~l~~~l~~f~~~~P-~i~v~i~~---------~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v~ 109 (290)
T 1twy_A 41 IMDVLAEKYNQQHP-ETYVAVQG---------VGSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIVV 109 (290)
T ss_dssp HHHHHHHHHHHHCT-TCEEEEEE---------SCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhhCC-CceEEEEe---------cCcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEEE
Confidence 34578888888874 25565544 24678999999999999886433222110 2222 3677888888888
Q ss_pred Ecc
Q 002352 550 PIK 552 (932)
Q Consensus 550 ~~~ 552 (932)
++.
T Consensus 110 ~~~ 112 (290)
T 1twy_A 110 NQA 112 (290)
T ss_dssp CTT
T ss_pred CCC
Confidence 755
No 218
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=77.92 E-value=18 Score=35.31 Aligned_cols=68 Identities=10% Similarity=0.009 Sum_probs=48.9
Q ss_pred EEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeeccccccccccccccccCeEEEE
Q 002352 470 GYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIV 549 (932)
Q Consensus 470 G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv 549 (932)
.+-..++..+.++.+ .+++++.. ++..+++.+|.+|++|+++..... ..+ -+.++....+++++
T Consensus 40 ~~l~~~l~~f~~~~P-~i~l~i~~---------~~~~~~~~~L~~g~~Dl~i~~~~~-----~~~-~~~~l~~~~~~~v~ 103 (238)
T 3onm_A 40 TLLPFLLNRVATLYP-RLAIDVRV---------KRSPFIADMLSSGEVDLAITTAKV-----DSH-PHVILRTSPTLWYC 103 (238)
T ss_dssp THHHHHHHHHHHHCT-TCCEEEEE---------CCHHHHHHHHHHTSCSEEEECSCC------CC-CEEEEEEECEEEEE
T ss_pred HHHHHHHHHHHHHCC-CcEEEEEE---------CCHHHHHHHHHCCCccEEEEecCC-----CCc-ceEEeecCCEEEEE
Confidence 345688899988887 36666655 247899999999999999864321 112 34678888899988
Q ss_pred EccC
Q 002352 550 PIKD 553 (932)
Q Consensus 550 ~~~~ 553 (932)
++..
T Consensus 104 ~~~~ 107 (238)
T 3onm_A 104 SVDY 107 (238)
T ss_dssp ETTC
T ss_pred cCCC
Confidence 8653
No 219
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=77.48 E-value=14 Score=39.21 Aligned_cols=91 Identities=15% Similarity=0.049 Sum_probs=68.0
Q ss_pred cEEEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChhHHH
Q 002352 18 PVNVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSMQTN 97 (932)
Q Consensus 18 ~i~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~~a~ 97 (932)
.=+||++.............|+..+++..|.+ .++.+.+..+-.|+..+.+++..|+.+ ++++|+......
T Consensus 149 ~~kIGfVgg~~~p~v~~~~~GF~~G~k~~np~-----i~v~~~~~g~~~d~~kg~~~a~~l~~~-G~DvIf~~~d~~--- 219 (356)
T 3s99_A 149 KGIAGYIGSVPVPEVVQGINSFMLGAQSVNPD-----FRVKVIWVNSWFDPGKEADAAKALIDQ-GVDIITQHTDST--- 219 (356)
T ss_dssp SCEEEEEECCCCHHHHHHHHHHHHHHHTTCTT-----CEEEEEECSSSCCHHHHHHHHHHHHHT-TCSEEEESSSSS---
T ss_pred CCEEEEECCCccHHHHHHHHHHHHHHHHHCCC-----CEEEEEECCCCCChHHHHHHHHHHHhC-CCcEEEECCCch---
Confidence 34799998876644445678999999988754 566666666657999999999999987 999998765553
Q ss_pred HHHHhcCCCCccEEecccCC
Q 002352 98 FIIQLGNKSQVPILSFSATS 117 (932)
Q Consensus 98 ~v~~~~~~~~iP~Is~~a~~ 117 (932)
.+...+.+.++-+|.+....
T Consensus 220 Gv~~aa~e~Gv~vIG~D~dq 239 (356)
T 3s99_A 220 AAIQVAHDRGIKAFGQASDM 239 (356)
T ss_dssp HHHHHHHHTTCEEEEEESCC
T ss_pred HHHHHHHHcCCEEEEEcCch
Confidence 34555666788888876653
No 220
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=75.46 E-value=8.6 Score=37.94 Aligned_cols=79 Identities=14% Similarity=0.121 Sum_probs=48.9
Q ss_pred HHHHhcCCeEEEEccCChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEE
Q 002352 76 LDLLNNVLVQAILGPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAV 155 (932)
Q Consensus 76 ~~li~~~~v~aiiGp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ 155 (932)
.+.+.+.++.+|+-+..+.... +..+.+..++|++.. .++.++.++..+-++|+
T Consensus 66 ~~~L~~~g~d~iviaCnTa~~~-~~~l~~~~~iPvi~i-------------------------~~a~~~~~~~~~~~rig 119 (226)
T 2zsk_A 66 AKALERAGAELIAFAANTPHLV-FDDVQREVNVPMVSI-------------------------IDAVAEEILKRGVRKVL 119 (226)
T ss_dssp HHHHHHHTCSEEEESSSGGGGG-HHHHHHHCSSCBCCH-------------------------HHHHHHHHHHTTCCEEE
T ss_pred HHHHHHcCCCEEEECCCcHHHH-HHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCeEE
Confidence 3334445899999877766543 455555667888763 23444444445678999
Q ss_pred EEEEcCCcCCChHHHHHHHHHhCCceee
Q 002352 156 PIYVDNQYGEEMIPSLTDALQAIDTRVP 183 (932)
Q Consensus 156 ii~~d~~~g~~~~~~l~~~l~~~g~~v~ 183 (932)
++...... . ...+++.+++.|+++.
T Consensus 120 vlaT~~T~--~-~~~y~~~l~~~g~~v~ 144 (226)
T 2zsk_A 120 LLGTKTTM--T-ADFYIKTLEEKGLEVV 144 (226)
T ss_dssp EESSTTTT--S-CHHHHHHHHTTTCEEE
T ss_pred EEeCHHHH--h-hhHHHHHHHHCCCEEE
Confidence 99753322 2 2456777887887753
No 221
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=74.81 E-value=4.1 Score=44.03 Aligned_cols=91 Identities=12% Similarity=0.030 Sum_probs=67.7
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeCh
Q 002352 139 VGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP 218 (932)
Q Consensus 139 ~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~ 218 (932)
...+.++++.+|.+++.+|+...-...+..+.+.+.|++.|+.+..-..+..+++.+.+.+.+..+++.++|+||-.+.+
T Consensus 19 ~~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 98 (383)
T 3ox4_A 19 LEKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGGG 98 (383)
T ss_dssp HHHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred HHHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCCc
Confidence 34466777888999999999765444456888999999999887544445566777888888888888999999888766
Q ss_pred h--hHHHHHHHHH
Q 002352 219 S--LGSRIFEKAN 229 (932)
Q Consensus 219 ~--~~~~l~~~a~ 229 (932)
. ++..++....
T Consensus 99 sv~D~aK~ia~~~ 111 (383)
T 3ox4_A 99 SPHDCAKAIALVA 111 (383)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5 4455555444
No 222
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=74.37 E-value=21 Score=34.99 Aligned_cols=136 Identities=13% Similarity=0.147 Sum_probs=82.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCch
Q 002352 57 LLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDS 136 (932)
Q Consensus 57 l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~ 136 (932)
.++.+.+.. -..++..+.+++...++++||.-.. .+.. +-+..++|+|.... +..
T Consensus 39 ~~I~vi~~~--le~av~~a~~~~~~~~~dVIISRGg--ta~~---Lr~~~~iPVV~I~v------------------s~~ 93 (225)
T 2pju_A 39 ANITPIQLG--FEKAVTYIRKKLANERCDAIIAAGS--NGAY---LKSRLSVPVILIKP------------------SGY 93 (225)
T ss_dssp CEEEEECCC--HHHHHHHHHHHTTTSCCSEEEEEHH--HHHH---HHTTCSSCEEEECC------------------CHH
T ss_pred ceEEEecCc--HHHHHHHHHHHHhcCCCeEEEeCCh--HHHH---HHhhCCCCEEEecC------------------CHH
Confidence 455666643 4568888888877657999996222 2333 33456799998532 223
Q ss_pred hHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEe
Q 002352 137 SQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHM 216 (932)
Q Consensus 137 ~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 216 (932)
...+++... +.++ ++++++...+.. .....+.+.+ |.++..... .+.++....+.++++.+.++||-..
T Consensus 94 Dil~aL~~a-~~~~-~kIavVg~~~~~--~~~~~i~~ll---~~~i~~~~~----~~~ee~~~~i~~l~~~G~~vVVG~~ 162 (225)
T 2pju_A 94 DVLQFLAKA-GKLT-SSIGVVTYQETI--PALVAFQKTF---NLRLDQRSY----ITEEDARGQINELKANGTEAVVGAG 162 (225)
T ss_dssp HHHHHHHHT-TCTT-SCEEEEEESSCC--HHHHHHHHHH---TCCEEEEEE----SSHHHHHHHHHHHHHTTCCEEEESH
T ss_pred HHHHHHHHH-HhhC-CcEEEEeCchhh--hHHHHHHHHh---CCceEEEEe----CCHHHHHHHHHHHHHCCCCEEECCH
Confidence 334444443 3344 589988764431 1233344433 555554332 3567899999999999999976532
Q ss_pred ChhhHHHHHHHHHhCCcc
Q 002352 217 LPSLGSRIFEKANEIGLM 234 (932)
Q Consensus 217 ~~~~~~~l~~~a~~~g~~ 234 (932)
...+.|++.||.
T Consensus 163 ------~~~~~A~~~Gl~ 174 (225)
T 2pju_A 163 ------LITDLAEEAGMT 174 (225)
T ss_dssp ------HHHHHHHHTTSE
T ss_pred ------HHHHHHHHcCCc
Confidence 235678899984
No 223
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=74.23 E-value=27 Score=33.43 Aligned_cols=159 Identities=15% Similarity=0.199 Sum_probs=94.6
Q ss_pred EEEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChhHHHH
Q 002352 19 VNVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSMQTNF 98 (932)
Q Consensus 19 i~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~~a~~ 98 (932)
.+|.++.|..+. ..-++-.+.+.+. .+. +++. +-..++..+.++ . +++++||.-.. .+..
T Consensus 5 ~~I~~iapy~~l-----~~~~~~i~~e~~~-------~i~--i~~~--~l~~~v~~a~~~-~-~~~dVIISRGg--ta~~ 64 (196)
T 2q5c_A 5 LKIALISQNENL-----LNLFPKLALEKNF-------IPI--TKTA--SLTRASKIAFGL-Q-DEVDAIISRGA--TSDY 64 (196)
T ss_dssp CEEEEEESCHHH-----HHHHHHHHHHHTC-------EEE--EEEC--CHHHHHHHHHHH-T-TTCSEEEEEHH--HHHH
T ss_pred CcEEEEEccHHH-----HHHHHHHHhhhCC-------ceE--EEEC--CHHHHHHHHHHh-c-CCCeEEEECCh--HHHH
Confidence 478888887552 2223333334322 333 3432 356788888888 5 59999996222 2333
Q ss_pred HHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhC
Q 002352 99 IIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAI 178 (932)
Q Consensus 99 v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~ 178 (932)
+-+..++|+|.... +.....+++...- .++ ++++++...+.. .....+.+.+
T Consensus 65 ---lr~~~~iPVV~I~~------------------s~~Dil~al~~a~-~~~-~kIavvg~~~~~--~~~~~~~~ll--- 116 (196)
T 2q5c_A 65 ---IKKSVSIPSISIKV------------------TRFDTMRAVYNAK-RFG-NELALIAYKHSI--VDKHEIEAML--- 116 (196)
T ss_dssp ---HHTTCSSCEEEECC------------------CHHHHHHHHHHHG-GGC-SEEEEEEESSCS--SCHHHHHHHH---
T ss_pred ---HHHhCCCCEEEEcC------------------CHhHHHHHHHHHH-hhC-CcEEEEeCcchh--hHHHHHHHHh---
Confidence 33456799998532 2333445555543 344 489988764432 2245555554
Q ss_pred CceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhCCccc
Q 002352 179 DTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMN 235 (932)
Q Consensus 179 g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~g~~~ 235 (932)
|.++..... .+.++....+.++++.+.++||-.. ...+.|++.|+..
T Consensus 117 ~~~i~~~~~----~~~~e~~~~i~~l~~~G~~vvVG~~------~~~~~A~~~Gl~~ 163 (196)
T 2q5c_A 117 GVKIKEFLF----SSEDEITTLISKVKTENIKIVVSGK------TVTDEAIKQGLYG 163 (196)
T ss_dssp TCEEEEEEE----CSGGGHHHHHHHHHHTTCCEEEECH------HHHHHHHHTTCEE
T ss_pred CCceEEEEe----CCHHHHHHHHHHHHHCCCeEEECCH------HHHHHHHHcCCcE
Confidence 455554322 3566788999999999999976533 2356788999853
No 224
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=72.68 E-value=49 Score=34.98 Aligned_cols=69 Identities=7% Similarity=0.090 Sum_probs=42.0
Q ss_pred HHHHHHHHHC-CCcccEEEEeccCCCCCCCCCHHHHHHHHH-cC-cccEEEeeeeeecccc---ccccccccccccCeEE
Q 002352 474 AVFKAVIEEL-PYAVAYDFVPYAQPDGTSSGSYNDLMYQVF-RG-KFDAVVGDTTILANRS---KFVEFTLPYTESGVSM 547 (932)
Q Consensus 474 dl~~~la~~l-~f~~~~~~~~~~~~~g~~ngs~~~li~~l~-~g-~~D~~~~~~~it~~R~---~~vdfs~p~~~~~~~~ 547 (932)
+|.+.+.++. |.++++.+ |.-..++.++. +| .+|+.++.-.-..++. ...+...+|....+++
T Consensus 59 ~l~~~Fe~~~pgv~V~~~~-----------ggSg~l~~qi~e~G~~aDVf~sad~~~~~~l~~~g~~~~~~~~a~n~lVl 127 (354)
T 3k6v_A 59 ELEAEFEAQHPGVDVQREA-----------AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMIL 127 (354)
T ss_dssp HHHHHHHHHSTTCEEEEEE-----------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEE
T ss_pred HHHHHHHHHCCCcEEEEEe-----------CCHHHHHHHHHhcCCCccEEEECCHHHHHHHHhCCCCCCceEeECCeEEE
Confidence 6777777887 75544433 12357888885 34 7998875322111111 2234456788889999
Q ss_pred EEEccC
Q 002352 548 IVPIKD 553 (932)
Q Consensus 548 lv~~~~ 553 (932)
++|+..
T Consensus 128 iv~~~~ 133 (354)
T 3k6v_A 128 AYTNES 133 (354)
T ss_dssp EECTTS
T ss_pred EEECCC
Confidence 998764
No 225
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=72.08 E-value=16 Score=37.44 Aligned_cols=101 Identities=11% Similarity=-0.001 Sum_probs=60.7
Q ss_pred CCCHHHHHhCCCcEEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCCcceE
Q 002352 663 ITDFQMLIKSGDNVGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYCSKYT 742 (932)
Q Consensus 663 i~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~l~ 742 (932)
+++++||. +++|++.--...+.||++.+.+-.-+..+.+.|-+ -..|- .|++++=...-.-+.++ .|.
T Consensus 121 ~~~~~~l~--~~RIATkYp~l~r~yf~~~gi~~~Ii~l~GsvE~a---P~~Gl----ADaIvDiVsTG~TLraN---gL~ 188 (304)
T 1nh8_A 121 NWTTADLA--GMRIATAYPNLVRKDLATKGIEATVIRLDGAVEIS---VQLGV----ADAIADVVGSGRTLSQH---DLV 188 (304)
T ss_dssp CCCGGGGT--TCEEEESCHHHHHHHHHHHTCCCEEEECSSCCTHH---HHTTS----CSEEEEEESSSHHHHHT---TEE
T ss_pred cCChHHhC--CCEEEeCcHHHHHHHHHHCCCeEEEEECCCceeec---cCCCc----ccEEEEEeCChHHHHHC---cCE
Confidence 67889997 88999877777889998877753334455565533 34455 67777654444433332 367
Q ss_pred EecccccccceEEEecCCCC-C--hHHHHHHHHhhh
Q 002352 743 LIERTFETAGFGFAFPLHSP-L--VPEVSRAILNVT 775 (932)
Q Consensus 743 ~~~~~~~~~~~~~~~~k~s~-l--~~~in~~il~l~ 775 (932)
++++.+....-.++..+.+. . .+.++..+.++.
T Consensus 189 ~i~e~I~~SsA~LI~n~~s~~~~k~~~i~~l~~rl~ 224 (304)
T 1nh8_A 189 AFGEPLCDSEAVLIERAGTDGQDQTEARDQLVARVQ 224 (304)
T ss_dssp EEEEEEEEECEEEEEEC--------CHHHHHHHHHH
T ss_pred EcccEEEEEEEEEEEccccchhhhHHHHHHHHHHHH
Confidence 77555555555666677652 1 235666666654
No 226
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=71.08 E-value=18 Score=37.95 Aligned_cols=59 Identities=14% Similarity=-0.047 Sum_probs=45.0
Q ss_pred CCCCCHHHHHhCCCcEEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccc
Q 002352 661 PTITDFQMLIKSGDNVGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPY 729 (932)
Q Consensus 661 ~~i~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~ 729 (932)
.+|++++||. |+++.+..+......++.++... ..-...|...+|++|. +|+.....+.
T Consensus 148 ~pI~s~~DLk--G~KiRv~~~~~~~~~~~alGa~p----v~m~~~Evy~ALq~G~----VDg~~~p~~~ 206 (327)
T 2hpg_A 148 KPIRKPEDLN--GLRIRTPGAPAWQESIRSLGAIP----VAVNFGEIYTAVQTRA----VDGAELTYAN 206 (327)
T ss_dssp SCCSSGGGGT--TCEEECCSSHHHHHHHHHHTSEE----ECCCGGGHHHHHHTTS----CSEEEECHHH
T ss_pred CCCCCHHHHC--CCEEEeCCCHHHHHHHHHcCCEe----eecCHHHHHHHHHcCC----eeEEECCHHH
Confidence 4699999999 99998875556677888877532 2235678899999999 9999876544
No 227
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=70.76 E-value=25 Score=36.53 Aligned_cols=60 Identities=10% Similarity=0.054 Sum_probs=45.1
Q ss_pred CCCCCHHHHHhCCCcEEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEeccccc
Q 002352 661 PTITDFQMLIKSGDNVGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYT 730 (932)
Q Consensus 661 ~~i~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~ 730 (932)
.+|++++||. |+++.+........+++.++... ..-...|...+|++|. +|+.....+.+
T Consensus 133 ~pI~s~~Dlk--GlKiRv~~~~~~~~~~~alGa~p----v~m~~~Evy~ALq~G~----vDg~~~~~~~~ 192 (312)
T 2xwv_A 133 RAINSIADMK--GLKLRVPNAATNLAYAKYVGASP----TPMAFSEVYLALQTNA----VDGQENPLAAV 192 (312)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHHHHHTCEE----EECCGGGHHHHHHTTS----SSEEEEEHHHH
T ss_pred CCcCCHHHhC--CCEEEeCCCHHHHHHHHHcCCee----eecCHHHHHHHHHcCC----cceEeccHHHH
Confidence 4699999999 99998876554567788877532 2235577899999999 99998765544
No 228
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=70.35 E-value=6.8 Score=38.75 Aligned_cols=83 Identities=12% Similarity=0.225 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCeEEEEccCChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcC
Q 002352 71 AAAAALDLLNNVLVQAILGPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFG 150 (932)
Q Consensus 71 a~~~a~~li~~~~v~aiiGp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~ 150 (932)
....+.+.+.+.++.+|+-+..+.. ..+..+-+..++|++.. .++.++.+...+
T Consensus 62 ~l~~~~~~l~~~g~d~iviaCnTa~-~~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~ 115 (228)
T 1jfl_A 62 QLIWTAKRLEECGADFIIMPCNTAH-AFVEDIRKAIKIPIISM-------------------------IEETAKKVKELG 115 (228)
T ss_dssp HHHHHHHHHHHHTCSEEECSCTGGG-GGHHHHHHHCSSCBCCH-------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCEEEEcCccHH-HHHHHHHHhCCCCEech-------------------------HHHHHHHHHHcC
Confidence 3334444445569999998777664 55556666678888863 123333333336
Q ss_pred CeEEEEEEEcCCcCCChHHHHHHHHHhCCcee
Q 002352 151 WREAVPIYVDNQYGEEMIPSLTDALQAIDTRV 182 (932)
Q Consensus 151 w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v 182 (932)
-++|+++...... ....+++.+.+.|..+
T Consensus 116 ~~rigvlaT~~T~---~~~~y~~~l~~~g~~v 144 (228)
T 1jfl_A 116 FKKAGLLATTGTI---VSGVYEKEFSKYGVEI 144 (228)
T ss_dssp CSEEEEECCHHHH---HHTHHHHHHHHTTCEE
T ss_pred CCeEEEEecHHHh---hhhHHHHHHHHCCCeE
Confidence 6788888654321 1134556666677664
No 229
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=68.62 E-value=8.3 Score=39.16 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCeEEEEccCChhHHHHHHHhcCCCCccEEec
Q 002352 70 AAAAAALDLLNNVLVQAILGPEKSMQTNFIIQLGNKSQVPILSF 113 (932)
Q Consensus 70 ~a~~~a~~li~~~~v~aiiGp~~s~~a~~v~~~~~~~~iP~Is~ 113 (932)
.....+.+.+.+.++.+|+-+..+..+ ++..+-+..++|+|..
T Consensus 86 ~~l~~~~~~L~~~Gad~IVIaCNTah~-~l~~lr~~~~iPvigi 128 (268)
T 3s81_A 86 RYLERYLHMLEDAGAECIVIPCNTAHY-WFDDLQNVAKARMISI 128 (268)
T ss_dssp HHHHHHHHHHHHTTCSEEECSCSGGGG-GHHHHHHHCSSEEECH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCHHH-HHHHHHHHCCCCEEcc
Confidence 333445555556699999998777655 5666667778999974
No 230
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=68.15 E-value=7.7 Score=41.95 Aligned_cols=88 Identities=14% Similarity=0.061 Sum_probs=64.2
Q ss_pred HHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChh--
Q 002352 142 ITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS-- 219 (932)
Q Consensus 142 i~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~-- 219 (932)
+.++++.+|.+++.+|+.......+..+.+.+.|++.|+.+.....+..+++.+.+.+.+..+++.++|+||-.+.+.
T Consensus 22 l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~ 101 (386)
T 1rrm_A 22 LTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSPQ 101 (386)
T ss_dssp HHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEESHHHH
T ss_pred HHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCChHHH
Confidence 566777788899999886544444578889999999998765433455566777888888888889999999776654
Q ss_pred hHHHHHHHHH
Q 002352 220 LGSRIFEKAN 229 (932)
Q Consensus 220 ~~~~l~~~a~ 229 (932)
++..++....
T Consensus 102 D~aK~iA~~~ 111 (386)
T 1rrm_A 102 DTCKAIGIIS 111 (386)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555544
No 231
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=67.35 E-value=32 Score=35.30 Aligned_cols=122 Identities=7% Similarity=-0.040 Sum_probs=72.8
Q ss_pred EEEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChhHHHH
Q 002352 19 VNVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSMQTNF 98 (932)
Q Consensus 19 i~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~~a~~ 98 (932)
=+||++....... -..|+..|+++.|- . ++.+....+-.++..+.+++.+|+.+ ++.+|+.... ..+..
T Consensus 127 ~~Ig~i~g~~~~~---r~~Gf~~~~~~~~~-----~-~~~~~~~~~~~~~~~g~~~a~~ll~~-~~daI~~~~D-~~a~G 195 (296)
T 2hqb_A 127 HKVGVIAAFPWQP---EVEGFVDGAKYMNE-----S-EAFVRYVGEWTDADKALELFQELQKE-QVDVFYPAGD-GYHVP 195 (296)
T ss_dssp SEEEEEESCTTCH---HHHHHHHHHHHTTC-----C-EEEEEECSSSSCHHHHHHHHHHHHTT-TCCEEECCCT-TTHHH
T ss_pred CeEEEEcCcCchh---hHHHHHHHHHHhCC-----C-eEEEEeeccccCHHHHHHHHHHHHHC-CCcEEEECCC-CCCHH
Confidence 4788887654432 57888899888752 2 34333333334788888999999986 7999997444 34455
Q ss_pred HHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeE
Q 002352 99 IIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWRE 153 (932)
Q Consensus 99 v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~ 153 (932)
+...+.+.++-+|.+......+ ...|.+-.+..+-...+...++.+..-.|+.
T Consensus 196 v~~a~~e~Gv~viG~D~~~~~~--~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~~ 248 (296)
T 2hqb_A 196 VVEAIKDQGDFAIGYVGDQADL--GGSTILTSTVQHVDDLYVLVAKRFQEGKLES 248 (296)
T ss_dssp HHHHHHHHTCEEEEEESCCSSS--SCSSEEEEEEECHHHHHHHHHHHTTTTCCCC
T ss_pred HHHHHHHcCCEEEEEecchhhh--CCCeEEEEEEEEhHHHHHHHHHHHHcCCCCC
Confidence 5555666778888886522111 1234444444444444444444444445653
No 232
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=67.27 E-value=10 Score=38.38 Aligned_cols=59 Identities=14% Similarity=-0.051 Sum_probs=38.4
Q ss_pred HHHHHhCCCcEEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEec-ccccc
Q 002352 666 FQMLIKSGDNVGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDE-IPYTK 731 (932)
Q Consensus 666 ~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~-~~~~~ 731 (932)
++||. |++|++..++....++-+.-....++ .+-...+...++.+|+ +||.+.- .+.+.
T Consensus 91 ~~dLk--Gk~Ia~~~~~~~~~~ll~~ll~~~~~-~~~~~~~~~~al~~G~----vDa~~~~~ep~~~ 150 (272)
T 2czl_A 91 LQALE--GLRVAVPGRHTTAYFLLSLYAQGFVP-VEVRYDRILPMVAQGE----VEAGLIIHESRFT 150 (272)
T ss_dssp CSCCT--TCEEEESCTTSHHHHHHHHHCSSCEE-EECCGGGHHHHHHTTS----SSEEEECTTHHHH
T ss_pred hHHhC--CCEEEeCCCCchHHHHHHHHhccCce-eecChHHHHHHHHCCC----CCEEEEecchhhh
Confidence 67888 99999987665554433211222233 3345568889999999 9998874 55554
No 233
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=66.60 E-value=26 Score=35.80 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=28.9
Q ss_pred eHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002352 472 SIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGD 523 (932)
Q Consensus 472 ~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~ 523 (932)
-..|.+.+.+++|++++ ..+. +-.-+...|.+|++|+....
T Consensus 31 ~~~i~~~~Le~~G~~Ve--~~~~---------~~~~~~~AL~~G~iD~~~e~ 71 (280)
T 3tmg_A 31 ATNVLKVVFEKMGYNAE--IFSV---------TTSIMYQYLASGKIDGTVSS 71 (280)
T ss_dssp HHHHHHHHHHHTTEEEE--EEEC---------CHHHHHHHHHTTSSSEEEEE
T ss_pred HHHHHHHHHHHCCCceE--EEEC---------CcHHHHHHHHCCCCcEEEec
Confidence 34677777788996544 4442 23568889999999998764
No 234
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=66.52 E-value=17 Score=37.25 Aligned_cols=42 Identities=12% Similarity=0.091 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCeEEEEccCChhHHHHHHHhcCCCCccEEec
Q 002352 72 AAAALDLLNNVLVQAILGPEKSMQTNFIIQLGNKSQVPILSF 113 (932)
Q Consensus 72 ~~~a~~li~~~~v~aiiGp~~s~~a~~v~~~~~~~~iP~Is~ 113 (932)
.+.+..++++.++.+|+-+..+..+.++..+-+..++|+|..
T Consensus 73 ~~i~~~ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVigi 114 (285)
T 2jfn_A 73 VAIVTAVQERYPLALAVVACNTASTVSLPALREKFDFPVVGV 114 (285)
T ss_dssp HHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEECC
T ss_pred HHHHHHHHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEeh
Confidence 334444556568999998766666557777777789999974
No 235
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=66.27 E-value=18 Score=37.50 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=28.3
Q ss_pred HHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002352 473 IAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGD 523 (932)
Q Consensus 473 ~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~ 523 (932)
..+++.+.+.+|+++++. +.. +..-+...|.+|++|+....
T Consensus 24 ~~i~~~~Le~~Gy~Ve~~--~~~--------~~~~~~~Al~~G~iDi~~e~ 64 (309)
T 1r9l_A 24 TLLVSRALEKLGYTVNKP--SEV--------DYNVGYTSLASGDATFTAVN 64 (309)
T ss_dssp HHHHHHHHHHTTCEECCC--EEC--------CHHHHHHHHHHTSSCEEEEE
T ss_pred HHHHHHHHHHcCCCeEEe--ecC--------chHHHHHHHhcCCceEEecc
Confidence 356677778889765542 211 24677889999999998653
No 236
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=65.58 E-value=52 Score=33.69 Aligned_cols=79 Identities=9% Similarity=0.072 Sum_probs=58.6
Q ss_pred eEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhh-HHHHHHHH
Q 002352 152 REAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSL-GSRIFEKA 228 (932)
Q Consensus 152 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~-~~~l~~~a 228 (932)
+.|+++..+ ++|...+...+.+++++.|..+..... ..+.......++.+.+.+.|.||+...... ....++++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA---NGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEA 79 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 478888864 778888899999999999988765432 233444556778888899999998765443 35778888
Q ss_pred HhCCc
Q 002352 229 NEIGL 233 (932)
Q Consensus 229 ~~~g~ 233 (932)
.+.|+
T Consensus 80 ~~~~i 84 (313)
T 3m9w_A 80 KQEGI 84 (313)
T ss_dssp HTTTC
T ss_pred HHCCC
Confidence 88775
No 237
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=64.71 E-value=16 Score=39.80 Aligned_cols=88 Identities=13% Similarity=0.050 Sum_probs=61.9
Q ss_pred HHHHHHHHcCCeEEEEEEEcCCcC-CChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChh
Q 002352 141 AITAIIKAFGWREAVPIYVDNQYG-EEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS 219 (932)
Q Consensus 141 ai~~~l~~~~w~~v~ii~~d~~~g-~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~ 219 (932)
.+.++++.+|.+++.+|+.+.... .+..+.+.+.|++.|+.+..-..+.++++.+.+...+..+++.++|+||-.+.+.
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 112 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGS 112 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESHH
T ss_pred HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChh
Confidence 366777888889999998633322 2468888999998898765333334456677888888888899999999776654
Q ss_pred --hHHHHHHHH
Q 002352 220 --LGSRIFEKA 228 (932)
Q Consensus 220 --~~~~l~~~a 228 (932)
++..++...
T Consensus 113 viD~AK~iA~~ 123 (407)
T 1vlj_A 113 VVDSAKAVAAG 123 (407)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 445555443
No 238
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=64.42 E-value=5.1 Score=40.82 Aligned_cols=66 Identities=11% Similarity=0.137 Sum_probs=42.4
Q ss_pred EEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeeccccccccccccccccCeEEEE
Q 002352 470 GYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIV 549 (932)
Q Consensus 470 G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv 549 (932)
.+-.+++..+.++.+ .+.++....+ .+.+|.+|++|+++..... ....+. ..|.....+++++
T Consensus 104 ~~l~~~l~~f~~~~P-~v~i~~~~~~------------~~~~l~~~~~Dl~i~~~~~---~~~~l~-~~~l~~~~~~~v~ 166 (291)
T 3szp_A 104 RMMMPMFNAFMEKYP-DIHIELMMSN------------QADDLDPTEWDVIFRVGPQ---RDSSLI-ARKIGEVKDILVA 166 (291)
T ss_dssp HHTHHHHHHHHHHCT-TEEEEEEEEC------------SCSCCCGGGCSEEEEESCC---CCTTCE-EEEEEEECEEEEE
T ss_pred HHHHHHHHHHHHHCC-CeEEEEEEec------------CccCccccCceEEEEecCC---CCCCee-EEEecccceEEEE
Confidence 455688999998886 3566665322 1246788999999864422 222232 3577788888888
Q ss_pred Ecc
Q 002352 550 PIK 552 (932)
Q Consensus 550 ~~~ 552 (932)
+..
T Consensus 167 ~~~ 169 (291)
T 3szp_A 167 SPQ 169 (291)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 239
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=63.72 E-value=17 Score=36.91 Aligned_cols=115 Identities=10% Similarity=0.072 Sum_probs=62.5
Q ss_pred HHHhcCCeEEEEccCChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHH-HHHcCCeEEE
Q 002352 77 DLLNNVLVQAILGPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAI-IKAFGWREAV 155 (932)
Q Consensus 77 ~li~~~~v~aiiGp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~-l~~~~w~~v~ 155 (932)
+.+.+.++.+|+-+..+..+.++..+.+..++|+|... ++.++. ++..+-++|+
T Consensus 59 ~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi~-------------------------ep~~~~A~~~~~~~rIg 113 (267)
T 2gzm_A 59 EHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVGVI-------------------------HPGSRTALKVTNTYHVG 113 (267)
T ss_dssp HHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESH-------------------------HHHHHHHHHHCSSCEEE
T ss_pred HHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeec-------------------------HHHHHHHHHccCCCEEE
Confidence 33444699999987666665567777778899999731 111111 2223456777
Q ss_pred EEEEcCCcCCChHHHHHHHHHhC--Cceeeeeee------cCCCC-----ChhHHHHHHHHHhcCCceEEEEEeChh
Q 002352 156 PIYVDNQYGEEMIPSLTDALQAI--DTRVPYRSV------ISPLA-----TDDQIEKELYKLFTMQTRVFILHMLPS 219 (932)
Q Consensus 156 ii~~d~~~g~~~~~~l~~~l~~~--g~~v~~~~~------~~~~~-----~~~~~~~~l~~l~~~~~~viil~~~~~ 219 (932)
++...... ....+++.+++. |.++..... +..+. ....+...+..+.+.++|+||+.|..-
T Consensus 114 VlaT~~T~---~~~~y~~~l~~~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~~~d~iVLGCTh~ 187 (267)
T 2gzm_A 114 IIGTIGTV---KSGAYEEALKSINNRVMVESLACPPFVELVESGNFESEMAYEVVRETLQPLKNTDIDTLILGCTHY 187 (267)
T ss_dssp EEECHHHH---HHTHHHHHHHHHCTTCEEEEEECTTHHHHHHTTCSSSHHHHHHHHHHHHHHHHSCCSEEEECSTTG
T ss_pred EEEChHHh---ccHHHHHHHHHhCCCCEEeccCCHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcccCh
Confidence 77543221 112344555544 544432110 00000 123355566666677888888887654
No 240
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=63.41 E-value=13 Score=38.32 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=42.0
Q ss_pred cccchhhhHHHHhhhcC-cc-cccccchh------hhHHHHHHHHHhhhhhhhhhhhhhhhc
Q 002352 603 QVGTSFWFSFSTMVFSH-RE-RVISNLAR------FVMIVWYFVVLILTQSYTASLSSLLTV 656 (932)
Q Consensus 603 ~~~~~~~~~~~~l~~~~-~~-~~~s~~~R------~~~~~w~~~~lil~~~Yta~L~s~Lt~ 656 (932)
++.+++|+++.++...| ++ .|.+..+| ++.++|+++++.+.++-.+.+...+..
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~ 285 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRV 285 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57799999999999766 33 34555555 699999999999999888877776643
No 241
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=62.96 E-value=8.1 Score=38.15 Aligned_cols=110 Identities=11% Similarity=0.072 Sum_probs=63.0
Q ss_pred HhcCCeEEEEccCChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEE
Q 002352 79 LNNVLVQAILGPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIY 158 (932)
Q Consensus 79 i~~~~v~aiiGp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~ 158 (932)
+.+.++++|+-+..+. ..+..+.+..++|++... ++.++.....+ ++|+++.
T Consensus 71 l~~~g~d~iviaCnta--~~~~~l~~~~~iPvi~i~-------------------------~~~~~~a~~~~-~rigVla 122 (228)
T 2eq5_A 71 FEREGVDAIIISCAAD--PAVEKVRKLLSIPVIGAG-------------------------SSVSALALAYG-RRVGVLN 122 (228)
T ss_dssp HHHTTCSEEEECSTTC--TTHHHHHHHCSSCEEEHH-------------------------HHHHHHHHTTC-SSEEEEC
T ss_pred HHHCCCCEEEEeCCch--HHHHHHHHhCCCCEeCcc-------------------------HHHHHHHHHhC-CeEEEEe
Confidence 3455899998866555 444555566688888631 11222222356 7888888
Q ss_pred EcCCcCCChHHHHHHHH-HhCCceeeeee-----ecCCCCChhHHHHHHHHHhcCCceEEEEEeChhh
Q 002352 159 VDNQYGEEMIPSLTDAL-QAIDTRVPYRS-----VISPLATDDQIEKELYKLFTMQTRVFILHMLPSL 220 (932)
Q Consensus 159 ~d~~~g~~~~~~l~~~l-~~~g~~v~~~~-----~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~ 220 (932)
..... ...+.+.+ ++.|..+.... .+........+...+..+.+.++|+||+.|..-.
T Consensus 123 t~~t~----~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvLgCT~~~ 186 (228)
T 2eq5_A 123 LTEET----PKVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTGMS 186 (228)
T ss_dssp SSSCC----CHHHHHHHGGGEEEEECCTTCCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEECCTHHH
T ss_pred cCccc----HHHHHHHHHHHhCccccCCceeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEECCCCcc
Confidence 74332 23567777 77666542211 0100001233556666776678999999887654
No 242
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=62.54 E-value=2.7 Score=40.41 Aligned_cols=65 Identities=11% Similarity=0.108 Sum_probs=42.0
Q ss_pred EeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeeccccccccccccccccCeEEEEE
Q 002352 471 YSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVP 550 (932)
Q Consensus 471 ~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~ 550 (932)
+-.+++..+.++.+ .+++++... +. +.+|.+|++|+++...... ...+. +.++....++++++
T Consensus 21 ~l~~~l~~f~~~~P-~v~l~i~~~-----------~~-~~~l~~g~~D~~i~~~~~~---~~~~~-~~~l~~~~~~~v~~ 83 (213)
T 3hhf_B 21 LLAPLAAKFNERYP-HIRLSLVSS-----------EG-YINLIERKVDIALRAGELD---DSGLR-ARHLFDSRFRVIAS 83 (213)
T ss_dssp THHHHHHHHHHHCT-TEEEEEECC-----------ST-THHHHTTSSSEEEECC--C---CSSEE-EEEEEEECEEEEEC
T ss_pred HHHHHHHHHHHHCC-CcEEEEEeC-----------Cc-HHHHHhCCccEEEEEecCC---Cccce-EEeeecceEEEEeC
Confidence 45688999999887 356665521 11 3458899999998643222 22232 36788888888887
Q ss_pred cc
Q 002352 551 IK 552 (932)
Q Consensus 551 ~~ 552 (932)
+.
T Consensus 84 ~~ 85 (213)
T 3hhf_B 84 PE 85 (213)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 243
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=62.14 E-value=14 Score=37.58 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=28.4
Q ss_pred HHHHHHhcCCeEEEEccCChhHHHHHHHhcCCCCccEEec
Q 002352 74 AALDLLNNVLVQAILGPEKSMQTNFIIQLGNKSQVPILSF 113 (932)
Q Consensus 74 ~a~~li~~~~v~aiiGp~~s~~a~~v~~~~~~~~iP~Is~ 113 (932)
.+.+.+.+.++.+|+-+..+..+.++..+.+..++|+|..
T Consensus 65 ~~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi 104 (273)
T 2oho_A 65 ELVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLGV 104 (273)
T ss_dssp HHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEES
T ss_pred HHHHHHHHCCCCEEEEeCchHhHHHHHHHHHhCCCCEEec
Confidence 3444445569999998766666556677777788999873
No 244
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=61.74 E-value=21 Score=38.14 Aligned_cols=87 Identities=10% Similarity=-0.001 Sum_probs=62.8
Q ss_pred HHHHHHHHcCCeEEEEEEEcCCcC-CChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChh
Q 002352 141 AITAIIKAFGWREAVPIYVDNQYG-EEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS 219 (932)
Q Consensus 141 ai~~~l~~~~w~~v~ii~~d~~~g-~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~ 219 (932)
.+.++++.+| +++.+|+...... .+..+.+.+.|++.|+++..-..+..+++.+.+.+.+..+++.++|+||-.+.+.
T Consensus 31 ~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs 109 (371)
T 1o2d_A 31 KRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGGGS 109 (371)
T ss_dssp HHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEESHH
T ss_pred HHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChH
Confidence 3566677778 8999999764433 3468889999999998765434445566778888888899889999999776654
Q ss_pred --hHHHHHHHH
Q 002352 220 --LGSRIFEKA 228 (932)
Q Consensus 220 --~~~~l~~~a 228 (932)
++..++...
T Consensus 110 v~D~AK~iA~~ 120 (371)
T 1o2d_A 110 PMDFAKAVAVL 120 (371)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 445555544
No 245
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=61.52 E-value=40 Score=26.91 Aligned_cols=64 Identities=17% Similarity=0.282 Sum_probs=41.6
Q ss_pred cCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHh
Q 002352 133 LNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLF 205 (932)
Q Consensus 133 ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~ 205 (932)
..+...++....+++..|-.-..+||..|. ..++.|.....+.|.++... .+.+||.+-|.+|.
T Consensus 58 vddkewaekairfvkslgaqvliiiydqdq---nrleefsrevrrrgfevrtv------tspddfkkslerli 121 (134)
T 2l69_A 58 VDDKEWAEKAIRFVKSLGAQVLIIIYDQDQ---NRLEEFSREVRRRGFEVRTV------TSPDDFKKSLERLI 121 (134)
T ss_dssp CSSHHHHHHHHHHHHHHCCCCEEEEECSCH---HHHHHHHHHHHHTTCCEEEE------SSHHHHHHHHHHHH
T ss_pred EccHHHHHHHHHHHHhcCCeEEEEEEeCch---hHHHHHHHHHHhcCceEEEe------cChHHHHHHHHHHH
Confidence 346666777777888888777777775544 45677777777778776533 23456766666543
No 246
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=61.46 E-value=17 Score=38.05 Aligned_cols=60 Identities=8% Similarity=0.050 Sum_probs=50.3
Q ss_pred cccccchhhhHHHHhhhcC-cc-ccc--ccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccC
Q 002352 601 QHQVGTSFWFSFSTMVFSH-RE-RVI--SNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQ 660 (932)
Q Consensus 601 ~~~~~~~~~~~~~~l~~~~-~~-~~~--s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 660 (932)
..++..++||++.++...| +. .|. +..+|+++.+-.+.++++.+.-++-+++-++.++..
T Consensus 89 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 89 LNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred ccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 3578899999999999776 33 343 677999999999999999999999999999877654
No 247
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=60.94 E-value=38 Score=34.81 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=26.6
Q ss_pred HHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEE
Q 002352 476 FKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVV 521 (932)
Q Consensus 476 ~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~ 521 (932)
++...++.|+ +++++.+. ++..+...|.+|++|+..
T Consensus 56 ~~~~~~~~G~--~Ve~~~f~--------~~~~~~~AL~~G~iD~~~ 91 (295)
T 1p99_A 56 VKELAKKDDI--DVEIKHFS--------DYNLPNKALNDGDIDMNA 91 (295)
T ss_dssp HHHHHGGGTC--CEEEEECS--------STTSHHHHHHTTSSSEEE
T ss_pred HHHHHHHcCC--eEEEEEeC--------ChHHHHHHHHcCCCCEEc
Confidence 4445556684 57777765 467899999999999975
No 248
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=60.51 E-value=16 Score=36.69 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=30.8
Q ss_pred EeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeee
Q 002352 471 YSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDT 524 (932)
Q Consensus 471 ~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~ 524 (932)
+...|.+.+.+.+|+++ +..+. +-.-+...|.+|++|+.....
T Consensus 16 i~~~i~~~~Le~~G~~V--e~~~~---------~~~~~~~al~~G~iD~~~e~w 58 (256)
T 3l6g_A 16 ASINVLTQAMKEHGFDV--KTTAL---------DNAVAWQTVANGQADGMVSAW 58 (256)
T ss_dssp HHHHHHHHHHHHTTEEE--EEEEC---------CHHHHHHHHHTTSSSEEEEEE
T ss_pred HHHHHHHHHHHHCCCce--EEEEC---------ChHHHHHHHHCCCCeEEEccc
Confidence 44578888888889654 44442 245788999999999987643
No 249
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=59.93 E-value=51 Score=32.75 Aligned_cols=162 Identities=9% Similarity=-0.003 Sum_probs=82.1
Q ss_pred EEEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCC-------CCHHHHHHHHHHHH---hcCCeEEEE
Q 002352 19 VNVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSK-------GDVVAAAAAALDLL---NNVLVQAIL 88 (932)
Q Consensus 19 i~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~-------~~~~~a~~~a~~li---~~~~v~aii 88 (932)
.||.+|.|-++. .+-..+.-+++.+.. .+.++.....+.+ .+...++....+.+ .+.++++|+
T Consensus 2 mrilvINPnts~---~~T~~i~~~~~~~~~----p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~iv 74 (245)
T 3qvl_A 2 VRIQVINPNTSL---AMTETIGAAARAVAA----PGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGHV 74 (245)
T ss_dssp EEEEEECSSCCH---HHHHHHHHHHHHHCC----TTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred CEEEEEeCCCCH---HHHHHHHHHHHHhcC----CCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 478999998772 223344444444431 2466766654432 23333332223322 235888888
Q ss_pred ccCChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChH
Q 002352 89 GPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMI 168 (932)
Q Consensus 89 Gp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~ 168 (932)
=...+..+. ..+-+..++|+|.. .++.+......+ ++|++|...... .
T Consensus 75 iaCnt~~~l--~~lr~~~~iPvigi-------------------------~e~~~~~a~~~~-~rigVlaT~~t~----~ 122 (245)
T 3qvl_A 75 IASFGDPGL--LAARELAQGPVIGI-------------------------AEAAMHMATMVA-TRFSIVTTLPRT----L 122 (245)
T ss_dssp EC-CCCTTH--HHHHHHCSSCEEEH-------------------------HHHHHHHHHHHC-SCEEEEESCGGG----H
T ss_pred EeCCChhHH--HHHHHHcCCCEECc-------------------------cHHHHHHHHHcC-CEEEEEEcchhH----H
Confidence 765554432 44445567888863 111222222224 789988865432 3
Q ss_pred HHHHHHHHhCCceee--eeeecCC-----C-CC---hhHHHHHHHHH-hcCCceEEEEEeChh
Q 002352 169 PSLTDALQAIDTRVP--YRSVISP-----L-AT---DDQIEKELYKL-FTMQTRVFILHMLPS 219 (932)
Q Consensus 169 ~~l~~~l~~~g~~v~--~~~~~~~-----~-~~---~~~~~~~l~~l-~~~~~~viil~~~~~ 219 (932)
..+++.+++.|.... ....... . .. ...+...+.++ .+.++|+||+.|..-
T Consensus 123 ~~~~~~l~~~g~~~~~~~v~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~gad~IVLGCTh~ 185 (245)
T 3qvl_A 123 IIARHLLHQYGFHQHCAALHAIDLPVLALEDGSGLAQEKVRERCIRALKEDGSGAIVLGSGGM 185 (245)
T ss_dssp HHHHHHHHHHTCGGGEEEEEECCSCGGGGGSSSSHHHHHHHHHHHHHHHHSCCSEEEECCGGG
T ss_pred HHHHHHHHHcCCCCeEEEEeCCCCCHHHHcCCcHHHHHHHHHHHHHHHHhcCCCEEEECCCCh
Confidence 566666766664322 1111110 0 11 12233444443 357899999988654
No 250
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=59.17 E-value=7.9 Score=40.01 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=47.3
Q ss_pred ccccchhhhHHHHhhhcC--cccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhh
Q 002352 602 HQVGTSFWFSFSTMVFSH--RERVISNLARFVMIVWYFVVLILTQSYTASLSSLLT 655 (932)
Q Consensus 602 ~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt 655 (932)
.++.+++||++.++..-| .-.|.+..+|++.+++.++++.+...+.+.+...|.
T Consensus 114 w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~ 169 (309)
T 3um7_A 114 WDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLG 169 (309)
T ss_dssp CSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567789999999999776 346789999999999999999999999999988764
No 251
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=59.00 E-value=43 Score=34.01 Aligned_cols=124 Identities=13% Similarity=0.101 Sum_probs=67.5
Q ss_pred HHHHHhcCCeEEEEccCChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEE
Q 002352 75 ALDLLNNVLVQAILGPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREA 154 (932)
Q Consensus 75 a~~li~~~~v~aiiGp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v 154 (932)
+.+.+.+.++.+|+-+..+..+.++..+-+..++|+|... -.++...++..+-++|
T Consensus 61 ~~~~L~~~g~d~IViACNTas~~~l~~lr~~~~iPVigii------------------------ep~~~~A~~~~~~~rI 116 (276)
T 2dwu_A 61 MVEFLKQFPLKALVVACNTAAAATLAALQEALSIPVIGVI------------------------HPGARAAIKVTKKGKI 116 (276)
T ss_dssp HHHHHTTSCEEEEEECCHHHHHHHHHHHHHHCSSCEEESH------------------------HHHHHHHHHHCSSSEE
T ss_pred HHHHHHHCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEecc------------------------HHHHHHHHHhcCCCeE
Confidence 3344445699999986666665667777777889988631 0111112233455788
Q ss_pred EEEEEcCCcCCChHHHHHHHHHhC--CceeeeeeecCC-------CC-----ChhHHHHHHHHHhcCCceEEEEEeChhh
Q 002352 155 VPIYVDNQYGEEMIPSLTDALQAI--DTRVPYRSVISP-------LA-----TDDQIEKELYKLFTMQTRVFILHMLPSL 220 (932)
Q Consensus 155 ~ii~~d~~~g~~~~~~l~~~l~~~--g~~v~~~~~~~~-------~~-----~~~~~~~~l~~l~~~~~~viil~~~~~~ 220 (932)
+++......-.+ .+++.+++. +.+|... ..+. +. ....+...+..+.+.++|+||+.|..-.
T Consensus 117 gVlaT~~T~~s~---~y~~~i~~~~~~~~v~~~-~~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~IVLGCTh~p 192 (276)
T 2dwu_A 117 GVIGTVGTIQSN---MYEKALHELDTYLKVHSH-ACPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCTHYP 192 (276)
T ss_dssp EEEECHHHHHTT---HHHHHHHHHCTTCEEEEE-ECTTHHHHHHHSTTCHHHHHHHHHHHHHHHHTSCCSEEEECSTTGG
T ss_pred EEEeChhhhhhH---HHHHHHHHhCCCCEEEee-eCHHHHHHHHcCCcCCHHHHHHHHHHHHHHHhcCCCEEEECCCCHH
Confidence 888764332221 233444432 4444322 1111 00 1123556677777788999999887543
Q ss_pred -HHHHHH
Q 002352 221 -GSRIFE 226 (932)
Q Consensus 221 -~~~l~~ 226 (932)
....++
T Consensus 193 ~l~~~i~ 199 (276)
T 2dwu_A 193 LLESYIK 199 (276)
T ss_dssp GGHHHHH
T ss_pred HHHHHHH
Confidence 333333
No 252
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=58.92 E-value=10 Score=40.78 Aligned_cols=74 Identities=7% Similarity=0.092 Sum_probs=50.3
Q ss_pred HHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChh
Q 002352 142 ITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS 219 (932)
Q Consensus 142 i~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~ 219 (932)
+.++++.+| +++.+|+....+.. ..+.+.+.|++ |+.+.+ ..+....+.+.+.+.+..+++.++|+||-.+.+.
T Consensus 44 l~~~l~~~g-~r~liVtd~~~~~~-~~~~v~~~L~~-g~~~~~-~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs 117 (387)
T 3uhj_A 44 LAAYLAPLG-KRALVLIDRVLFDA-LSERIGKSCGD-SLDIRF-ERFGGECCTSEIERVRKVAIEHGSDILVGVGGGK 117 (387)
T ss_dssp THHHHGGGC-SEEEEEECTTTHHH-HHHHC-------CCEEEE-EECCSSCSHHHHHHHHHHHHHHTCSEEEEESSHH
T ss_pred HHHHHHHcC-CEEEEEECchHHHH-HHHHHHHHHHc-CCCeEE-EEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcH
Confidence 567778888 99999886555433 56777888888 888743 3455566777888888888888999988877665
No 253
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=58.90 E-value=16 Score=37.76 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=36.6
Q ss_pred CCCHHHHHhC-----CCcEEEEcChhHHH----HHH--hcCCCcccccccCCHH-----HHHHHhhcccCCCceeEEEec
Q 002352 663 ITDFQMLIKS-----GDNVGYRKDSFVFG----ILK--QLGFDEKKLIAYSSPE-----ECDELFQKGSAGGGIAAAFDE 726 (932)
Q Consensus 663 i~s~~dL~~~-----~~~vg~~~~s~~~~----~l~--~~~~~~~~~~~~~~~~-----~~~~~l~~g~~~~g~~a~~~~ 726 (932)
|+|++||.+. |+.+|+..|+.... .|+ ..++.+ +....... +...++.+|+ ++++..-
T Consensus 105 I~si~DLk~~~~~~~gk~~g~~~G~~~~~~~~~~l~~~~yGL~d--~~~v~~~~~~~~a~~~~A~~~g~----~~v~~~w 178 (298)
T 2rin_A 105 IKDFKDIAAHKDELDGKIYGIEPGNDGNRLIIDMVEKGTFDLKG--FEVVESSEQGMLAQVARAEKSGD----PIVFLGW 178 (298)
T ss_dssp CCBGGGSGGGHHHHTSEEECCSTTCHHHHHHHHHHHHTGGGCTT--CEEECCCHHHHHHHHHHHHHTTC----CCEEEEE
T ss_pred CCCHHHHHHHHHHcCCeEECCCCChHHHHHHHHHhhhhcCCCCC--ceeccCCHHHHHHHHHHHHHCCC----CEEEEEe
Confidence 7889998643 67788877765433 344 455532 22233322 3357788888 8877765
Q ss_pred ccc
Q 002352 727 IPY 729 (932)
Q Consensus 727 ~~~ 729 (932)
.+.
T Consensus 179 ~p~ 181 (298)
T 2rin_A 179 EPH 181 (298)
T ss_dssp ESS
T ss_pred ccC
Confidence 544
No 254
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=58.32 E-value=4.9 Score=43.14 Aligned_cols=120 Identities=14% Similarity=0.194 Sum_probs=68.0
Q ss_pred CCCCCCHHHHHhCCCcEEEEc-------Chh-----------------------HHHHHHhcCCCcc--cccccCCHH--
Q 002352 660 QPTITDFQMLIKSGDNVGYRK-------DSF-----------------------VFGILKQLGFDEK--KLIAYSSPE-- 705 (932)
Q Consensus 660 ~~~i~s~~dL~~~~~~vg~~~-------~s~-----------------------~~~~l~~~~~~~~--~~~~~~~~~-- 705 (932)
...|++++||. |++||+.. |+. ...+|++.+.+.. +++.+...+
T Consensus 108 ds~I~s~~DLk--Gk~Igv~~~~~~~~~gs~~~~~~~~~~~~~~~~~gs~~~~~~~~~L~~~Gl~~~dv~~v~~~~~~~~ 185 (365)
T 2de3_A 108 DSPITAAADLA--GRRIGVSASAIRILRGQLGDYLELDPWRQTLVALGSWEARALLHTLEHGELGVDDVELVPISSPGVD 185 (365)
T ss_dssp TCSCCSGGGGT--TCEEEECHHHHHHHHTCCTTGGGSCHHHHHHHHTTHHHHHHHHHHHHHTTCCGGGSEEEECCCTTTC
T ss_pred CCCCCCHHHhC--CCeEEeecccccccCCCcccccccchhhhhhhccchhhHHHHHHHHHHcCCCHHHeEEEECCCcccc
Confidence 45799999999 99999986 431 4556777666533 334444321
Q ss_pred -----------------------HHHHHhhcccCCCceeEEEecccccccccccCCcceEEeccc----ccccceEEEec
Q 002352 706 -----------------------ECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYCSKYTLIERT----FETAGFGFAFP 758 (932)
Q Consensus 706 -----------------------~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~ 758 (932)
+..++|.+|+ +||++...++......+ + .+++.+. .......++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~G~----vDA~~~~~p~~~~~~~~--g-~~~l~~~~~~~~~~~~~~l~~~ 258 (365)
T 2de3_A 186 VPAEQLEESATVKGADLFPDVARGQAAVLASGD----VDALYSWLPWAGELQAT--G-ARPVVDLGLDERNAYASVWTVS 258 (365)
T ss_dssp CCHHHHHHSSBSSHHHHSTTHHHHHHHHHHSSS----CSEEEEEHHHHHHHHHT--T-EEESSCGGGSGGGCEEEEEEEE
T ss_pred ccccccccccccccccccccchhhHHHHHhCCC----cCEEEEcchhHHHHHhC--C-CEEEEeCcccCCCCceEEEEEc
Confidence 2688999999 99998876665443332 2 4444322 11122355555
Q ss_pred C-----CCCChHH----HHHHHHhhhccc-hHHHHHHHhc
Q 002352 759 L-----HSPLVPE----VSRAILNVTEGN-KMKEIEDEWF 788 (932)
Q Consensus 759 k-----~s~l~~~----in~~il~l~e~G-~~~~~~~~~~ 788 (932)
+ +..+... +.++...+.++. ...++..+++
T Consensus 259 ~~~~~~~p~~v~~~~~a~~~a~~~~~~~p~~~~~i~~~~~ 298 (365)
T 2de3_A 259 SGLVRQRPGLVQRLVDAAVDAGLWARDHSDAVTSLHAANL 298 (365)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHh
Confidence 3 2223333 444555555542 4445555555
No 255
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=57.73 E-value=1.3e+02 Score=30.40 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=42.4
Q ss_pred HHHHHHHHHC-CCcccEEEEeccCCCCCCCCCHHHHHHHHHc-Cc-ccEEEeeeeeec---cccccccccccccccCeEE
Q 002352 474 AVFKAVIEEL-PYAVAYDFVPYAQPDGTSSGSYNDLMYQVFR-GK-FDAVVGDTTILA---NRSKFVEFTLPYTESGVSM 547 (932)
Q Consensus 474 dl~~~la~~l-~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~-g~-~D~~~~~~~it~---~R~~~vdfs~p~~~~~~~~ 547 (932)
++++.+.++. |.+ +++.. ++...++.+|.+ |. +|+.+..-.... .....++...||....+++
T Consensus 21 ~l~~~F~~~~~gi~--V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvl 89 (295)
T 3cij_A 21 AFKRAFEEKHPNVE--VQTEA---------AGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAKNQIVL 89 (295)
T ss_dssp HHHHHHHHHCTTCE--EEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEEEECCEEE
T ss_pred HHHHHHHHHCCCce--EEEEe---------CcHHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEEEeeeEEE
Confidence 5667777774 754 44433 235678999988 75 999876321111 1122344567888889999
Q ss_pred EEEcc
Q 002352 548 IVPIK 552 (932)
Q Consensus 548 lv~~~ 552 (932)
++++.
T Consensus 90 ~~~~~ 94 (295)
T 3cij_A 90 AYRND 94 (295)
T ss_dssp EECTT
T ss_pred EEeCC
Confidence 98765
No 256
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=57.71 E-value=35 Score=31.77 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=47.8
Q ss_pred eEEEEEEEcCCcCC---ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcC-CceEEEEEeC
Q 002352 152 REAVPIYVDNQYGE---EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM-QTRVFILHML 217 (932)
Q Consensus 152 ~~v~ii~~d~~~g~---~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~-~~~viil~~~ 217 (932)
-++++|...|+.|. .....+.+.+++.|.++.....++ ++.+++.+.+++..+. ++|+||..+.
T Consensus 11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~--Dd~~~i~~~l~~a~~~~~~DlVittGG 78 (172)
T 1mkz_A 11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVK--ENRYAIRAQVSAWIASDDVQVVLITGG 78 (172)
T ss_dssp CEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHHSSSCCEEEEESC
T ss_pred CEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 47899988777663 235778889999999988776665 4556788888877655 6899988753
No 257
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=57.23 E-value=42 Score=32.75 Aligned_cols=67 Identities=10% Similarity=-0.006 Sum_probs=38.1
Q ss_pred HHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecc--ccc---cccc--cccccccCeE
Q 002352 474 AVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILAN--RSK---FVEF--TLPYTESGVS 546 (932)
Q Consensus 474 dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~--R~~---~vdf--s~p~~~~~~~ 546 (932)
++++.+.++.|.+ +++.. ++-..++.+|. +.+|+++.+-....+ ..+ .++. ..++....++
T Consensus 17 ~~~~~F~~~~gi~--V~~~~---------~~s~~l~~~l~-~~~Dv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (237)
T 2hxw_A 17 DIANKYSEKTGVK--VNVNF---------GPQATWFEKAK-KDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREAI 84 (237)
T ss_dssp HHHHHHHHHHCCC--EEEEE---------SSHHHHHHHHH-HHCSEEEESSHHHHHHHHTTSGGGCCGGGCEEEEEEEEE
T ss_pred HHHHHHHHHhCce--EEEEe---------CChHHHHHHhc-cCCCEEEeCCHHHHHHHHHhcccccCcccccccccCceE
Confidence 6777777777754 44432 23567888888 899998775421111 111 2221 2345556666
Q ss_pred EEEEcc
Q 002352 547 MIVPIK 552 (932)
Q Consensus 547 ~lv~~~ 552 (932)
+++++.
T Consensus 85 l~~~~~ 90 (237)
T 2hxw_A 85 ILTQKG 90 (237)
T ss_dssp EEESTT
T ss_pred EEEeCC
Confidence 666544
No 258
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=57.23 E-value=24 Score=36.93 Aligned_cols=89 Identities=6% Similarity=-0.012 Sum_probs=56.2
Q ss_pred HHHHHHHcCCeEEEEEEEc----CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeC
Q 002352 142 ITAIIKAFGWREAVPIYVD----NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML 217 (932)
Q Consensus 142 i~~~l~~~~w~~v~ii~~d----~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 217 (932)
.+.-++.-.-+.++++..+ ++|.......+.+++++.|..+..... ..+.+.-...++.+.+.+.|.||+...
T Consensus 52 ~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 52 LARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG---KHSAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp --------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEEC---TTSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHhhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3444444455789998865 445566788888899999988765432 223334455677788889999998765
Q ss_pred hhhHHHHHHHHHhCCc
Q 002352 218 PSLGSRIFEKANEIGL 233 (932)
Q Consensus 218 ~~~~~~l~~~a~~~g~ 233 (932)
......+.+.+.+.|+
T Consensus 129 ~~~~~~~~~~~~~~~i 144 (338)
T 3dbi_A 129 FLSVDEIDDIIDAHSQ 144 (338)
T ss_dssp SSCHHHHHHHHHHCSS
T ss_pred CCChHHHHHHHHcCCC
Confidence 5444556666777665
No 259
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=55.37 E-value=27 Score=26.13 Aligned_cols=14 Identities=14% Similarity=0.470 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 002352 819 GTAATSALIIFLAV 832 (932)
Q Consensus 819 ~~g~~ls~~vf~~E 832 (932)
++|-++++++|.+-
T Consensus 13 vlGg~~~lll~~gl 26 (70)
T 2klu_A 13 VLGGVAGLLLFIGL 26 (70)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHH
Confidence 44444444444433
No 260
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=55.07 E-value=32 Score=35.22 Aligned_cols=119 Identities=11% Similarity=-0.013 Sum_probs=65.5
Q ss_pred HHHHHHHHhcCCeEEEEccCChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCC
Q 002352 72 AAAALDLLNNVLVQAILGPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGW 151 (932)
Q Consensus 72 ~~~a~~li~~~~v~aiiGp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w 151 (932)
.+.+..| .+.++.+|+-+..+..+.++..+-+..++|+|...- .++...++..+-
T Consensus 76 ~~~~~~L-~~~g~d~IVIACNTas~~~l~~lr~~~~iPVigiie------------------------pa~~~A~~~~~~ 130 (290)
T 2vvt_A 76 WEMADFL-LKKRIKMLVIACNTATAVALEEIKAALPIPVVGVIL------------------------PGARAAVKVTKN 130 (290)
T ss_dssp HHHHHHH-HTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESSH------------------------HHHHHHHHHCSS
T ss_pred HHHHHHH-HHCCCCEEEEeCcchhHHHHHHHHHhCCCCEEcccH------------------------HHHHHHHHhcCC
Confidence 3334344 445999999877766656677777778999997310 011111223455
Q ss_pred eEEEEEEEcCCcCCChHHHHHHHHHhC--CceeeeeeecC-------CCC-----ChhHHHHHHHHHhcCCceEEEEEeC
Q 002352 152 REAVPIYVDNQYGEEMIPSLTDALQAI--DTRVPYRSVIS-------PLA-----TDDQIEKELYKLFTMQTRVFILHML 217 (932)
Q Consensus 152 ~~v~ii~~d~~~g~~~~~~l~~~l~~~--g~~v~~~~~~~-------~~~-----~~~~~~~~l~~l~~~~~~viil~~~ 217 (932)
++|+++......-. ..+++.+++. +.+|... ..+ .+. ....+...+..+.+.++|+||+.|.
T Consensus 131 ~rIgVLaT~~T~~s---~~y~~~l~~~~~~~~v~~~-~~~~lv~~ve~g~~~~~~~~~~l~~~l~~l~~~g~D~IVLGCT 206 (290)
T 2vvt_A 131 NKIGVIGTLGTIKS---ASYEIAIKSKAPAIEVTSL-ACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLILGCT 206 (290)
T ss_dssp SEEEEEECHHHHHT---THHHHHHHTTCTTSEEEEE-ECTTHHHHHHTTCTTSHHHHHHHHHHHGGGTTSCCSEEEECST
T ss_pred CEEEEEeCcHhhhh---HHHHHHHHHhCCCCEEEec-cCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence 78888875433211 1345555554 3444321 111 010 0123555666666778899999887
Q ss_pred hh
Q 002352 218 PS 219 (932)
Q Consensus 218 ~~ 219 (932)
.-
T Consensus 207 h~ 208 (290)
T 2vvt_A 207 HY 208 (290)
T ss_dssp TG
T ss_pred CH
Confidence 54
No 261
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=53.11 E-value=95 Score=25.56 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=64.0
Q ss_pred eEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhc-
Q 002352 128 FFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT- 206 (932)
Q Consensus 128 ~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~- 206 (932)
+|-...+++...+-+..-++..| -+|+++|+|.+--+ ...-.+.+.+.|+.+... .+..||..-+..+-.
T Consensus 4 ifvvfssdpeilkeivreikrqg-vrvvllysdqdekr--rrerleefekqgvdvrtv------edkedfrenireiwer 74 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQG-VRVVLLYSDQDEKR--RRERLEEFEKQGVDVRTV------EDKEDFRENIREIWER 74 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCSCHHH--HHHHHHHHHTTTCEEEEC------CSHHHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHhCC-eEEEEEecCchHHH--HHHHHHHHHHcCCceeee------ccHHHHHHHHHHHHHh
Confidence 34455678888888888888888 57888998755211 222334567788877543 345678777776642
Q ss_pred -CCceEEEEEeC--hhhHHHHHHHHHhCCc
Q 002352 207 -MQTRVFILHML--PSLGSRIFEKANEIGL 233 (932)
Q Consensus 207 -~~~~viil~~~--~~~~~~l~~~a~~~g~ 233 (932)
-+-+++++... -+-...++..|++.|.
T Consensus 75 ypqldvvvivttddkewikdfieeakergv 104 (162)
T 2l82_A 75 YPQLDVVVIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp CTTCCEEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred CCCCcEEEEEecCcHHHHHHHHHHHHhcCc
Confidence 34556555443 3457899999999996
No 262
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=53.08 E-value=29 Score=35.08 Aligned_cols=116 Identities=11% Similarity=0.096 Sum_probs=63.2
Q ss_pred HHHhcCCeEEEEccCChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCeEEEE
Q 002352 77 DLLNNVLVQAILGPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWREAVP 156 (932)
Q Consensus 77 ~li~~~~v~aiiGp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~i 156 (932)
+.+.+.++.+|+-+..+..+.++..+-+..++|+|... -.++...++.-+-++|++
T Consensus 61 ~~L~~~g~~~IVIACNTa~~~al~~lr~~~~iPvigii------------------------~pa~~~A~~~~~~~~IGV 116 (269)
T 3ist_A 61 NFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVI------------------------QPGSRAALKATRNNKIGV 116 (269)
T ss_dssp HHHHHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESH------------------------HHHHHHHHHHCSSSEEEE
T ss_pred HHHHHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEeec------------------------HHHHHHHHHHcCCCeEEE
Confidence 33444699999997776666567777788899999631 011222233334567777
Q ss_pred EEEcCCcCCChHHHHHHHHHhCC--ceeeeeee------cCCC-----CChhHHHHHHHHHhcCCceEEEEEeChh
Q 002352 157 IYVDNQYGEEMIPSLTDALQAID--TRVPYRSV------ISPL-----ATDDQIEKELYKLFTMQTRVFILHMLPS 219 (932)
Q Consensus 157 i~~d~~~g~~~~~~l~~~l~~~g--~~v~~~~~------~~~~-----~~~~~~~~~l~~l~~~~~~viil~~~~~ 219 (932)
+...... ....+++.+++.+ ..|..... +..+ .....+...+..+.+.++|.+|+.|..=
T Consensus 117 LaT~~Ti---~s~~y~~~i~~~~~~~~v~~~~~~~lV~~vE~g~~~~~~~~~~l~~~l~~l~~~g~D~iVLGCTh~ 189 (269)
T 3ist_A 117 LGTLGTV---ESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCTHY 189 (269)
T ss_dssp EECHHHH---HHTHHHHHHHHHCTTCEEEEEECHHHHHHHHTTCTTSHHHHHHHHHHHGGGGGSCCCEEEECSTTG
T ss_pred Eeccchh---hHHHHHHHHHHhCCCCEEeccCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCH
Confidence 7654321 1123344444432 33321100 0001 0122355666777778899999988754
No 263
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=53.06 E-value=42 Score=33.43 Aligned_cols=79 Identities=13% Similarity=0.039 Sum_probs=54.7
Q ss_pred eEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHH
Q 002352 152 REAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKAN 229 (932)
Q Consensus 152 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~ 229 (932)
+.|+++..+ ++|...+...+.+++++.|..+..... ..+...-...++.+.+.+.|.||+..........++.+.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASS---DDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQ 79 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHH
Confidence 468888764 556677788899999999988765432 223444556777788889999988655422345666777
Q ss_pred hCCc
Q 002352 230 EIGL 233 (932)
Q Consensus 230 ~~g~ 233 (932)
+.|+
T Consensus 80 ~~~i 83 (272)
T 3o74_A 80 DKGL 83 (272)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 7775
No 264
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=52.57 E-value=36 Score=34.75 Aligned_cols=38 Identities=5% Similarity=0.042 Sum_probs=27.3
Q ss_pred HHHHhcCCeEEEEccCChhHHHHHHHhcCCCCccEEec
Q 002352 76 LDLLNNVLVQAILGPEKSMQTNFIIQLGNKSQVPILSF 113 (932)
Q Consensus 76 ~~li~~~~v~aiiGp~~s~~a~~v~~~~~~~~iP~Is~ 113 (932)
.+.+.+.++.+|+-+..+..+.++..+-+..++|+|..
T Consensus 77 ~~~L~~~g~d~IVIaCNTas~~~l~~lr~~~~iPVigi 114 (286)
T 2jfq_A 77 ARKLMEFDIKMLVIACNTATAVALEYLQKTLSISVIGV 114 (286)
T ss_dssp HHHHTTSCCSEEEECCHHHHHHHHHHHHHHCSSEEEES
T ss_pred HHHHHHCCCCEEEEeCCchhHHHHHHHHHhCCCCEEec
Confidence 34444569999998776666556677777789999974
No 265
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=52.53 E-value=36 Score=35.62 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=50.6
Q ss_pred cccccchhhhHHHHhhhcC-cc-c--ccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccccC
Q 002352 601 QHQVGTSFWFSFSTMVFSH-RE-R--VISNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQLQ 660 (932)
Q Consensus 601 ~~~~~~~~~~~~~~l~~~~-~~-~--~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 660 (932)
..++..++||++.++...| +. . +.+..+++++.+-.+.++++.+.-++-+.+-++.++..
T Consensus 92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 3577889999999999776 33 2 35788999999999999999999999999999887654
No 266
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=52.31 E-value=73 Score=32.54 Aligned_cols=101 Identities=12% Similarity=0.036 Sum_probs=61.2
Q ss_pred CCCHHHHHhCCCcEEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCCcceE
Q 002352 663 ITDFQMLIKSGDNVGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYCSKYT 742 (932)
Q Consensus 663 i~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~l~ 742 (932)
+.++++|. +++|++.--...+.||++.+.+..-+..+.+.|-+ -..|- .|++++=...-.-+.++ .|.
T Consensus 116 ~~~~~~l~--g~RIATkyp~l~~~yf~~~gi~~~ii~l~GsvE~a---P~~Gl----ADaIvDivsTG~TLraN---gL~ 183 (299)
T 1h3d_A 116 WDGPLSLN--GKRIATSYPHLLKRYLDQKGISFKSCLLNGSVEVA---PRAGL----ADAICDLVSTGATLEAN---GLR 183 (299)
T ss_dssp CCCGGGGT--TCEEEESCHHHHHHHHHHHTCCCEEEECSSCTTHH---HHTTS----CSEEEEEESSCHHHHHT---TEE
T ss_pred CCChHHhC--CCEEEeCcHHHHHHHHHHcCCcEEEEECCCceeec---cCCCc----cceEEecccCHHHHHHC---CCE
Confidence 45678886 88999877777889998877765445555566533 34455 67777654444333333 366
Q ss_pred EecccccccceEEEecCCCC--C-hHHHHHHHHhhhc
Q 002352 743 LIERTFETAGFGFAFPLHSP--L-VPEVSRAILNVTE 776 (932)
Q Consensus 743 ~~~~~~~~~~~~~~~~k~s~--l-~~~in~~il~l~e 776 (932)
.++..+.+ .-.++..+.+. . .+.+++.+.++..
T Consensus 184 ~ie~I~~S-sA~LI~n~~s~~~~k~~~i~~l~~rl~~ 219 (299)
T 1h3d_A 184 EVEVIYRS-KACLIQRDGEMEESKQQLIDKLLTRIQG 219 (299)
T ss_dssp EEEEEEEE-CEEEEEESSCCCHHHHHHHHHHHHHHHH
T ss_pred EeEEEEee-EEEEEEeccccChhHHHHHHHHHHHHHH
Confidence 66555444 44566667661 2 2356666666643
No 267
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=50.47 E-value=43 Score=33.93 Aligned_cols=120 Identities=17% Similarity=0.144 Sum_probs=65.3
Q ss_pred HHHHHHHHhcCCeEEEEccCChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHH-HHHHHcC
Q 002352 72 AAAALDLLNNVLVQAILGPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAIT-AIIKAFG 150 (932)
Q Consensus 72 ~~~a~~li~~~~v~aiiGp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~-~~l~~~~ 150 (932)
.+.+..|..+.++.+|+-+..+..+.++..+-+..++|+|... ++.+ ..++.-+
T Consensus 55 ~~~~~~L~~~~g~d~iViACNTas~~~l~~lr~~~~iPVigii-------------------------epa~~~A~~~~~ 109 (272)
T 1zuw_A 55 WELTNYLLENHHIKMLVIACNTATAIALDDIQRSVGIPVVGVI-------------------------QPGARAAIKVTD 109 (272)
T ss_dssp HHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEESH-------------------------HHHHHHHHHHCS
T ss_pred HHHHHHHHhhcCCCEEEEeCchhhHHHHHHHHHHCCCCEEccc-------------------------HHHHHHHHHhcC
Confidence 3344444441599999987766665567777777899999731 1111 1122234
Q ss_pred CeEEEEEEEcCCcCCChHHHHHHHHHhC--Cceeeeeee------cCCCC-C----hhHHHHHHHHHhcCCceEEEEEeC
Q 002352 151 WREAVPIYVDNQYGEEMIPSLTDALQAI--DTRVPYRSV------ISPLA-T----DDQIEKELYKLFTMQTRVFILHML 217 (932)
Q Consensus 151 w~~v~ii~~d~~~g~~~~~~l~~~l~~~--g~~v~~~~~------~~~~~-~----~~~~~~~l~~l~~~~~~viil~~~ 217 (932)
-++|+++......-. ..+++.+++. |.++..... +..+. . ...+...+..+.+.++|++|+.|.
T Consensus 110 ~~rIgVlaT~~T~~s---~~y~~~i~~~~~~~~v~~~~~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~iVLGCT 186 (272)
T 1zuw_A 110 NQHIGVIGTENTIKS---NAYEEALLALNPDLKVENLACPLLVPFVESGKFLDQTADEIVKTSLYPLKDTSIDSLILGCT 186 (272)
T ss_dssp SSEEEEEECHHHHHT---THHHHHHHHHCTTCEEEEEECTTHHHHHTSCCCCHHHHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred CCEEEEEEChhhhhh---hHHHHHHHHhCCCCEEEeccCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhcCCCEEEECcc
Confidence 567777775422111 1233444433 444432110 11111 1 123556667777788999999987
Q ss_pred hh
Q 002352 218 PS 219 (932)
Q Consensus 218 ~~ 219 (932)
.-
T Consensus 187 h~ 188 (272)
T 1zuw_A 187 HY 188 (272)
T ss_dssp TG
T ss_pred CH
Confidence 54
No 268
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=50.28 E-value=35 Score=34.30 Aligned_cols=78 Identities=9% Similarity=0.048 Sum_probs=57.4
Q ss_pred CeEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHH
Q 002352 151 WREAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKA 228 (932)
Q Consensus 151 w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a 228 (932)
-+.|+++..+ ++|...+...+.+++++.|..+..... ..+...-...++.+.+.+.|.||+..... ...++.+
T Consensus 7 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~l 81 (276)
T 3jy6_A 7 SKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDA---NADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQEI 81 (276)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEEC---TTCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHHHH
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHHHH
Confidence 3578888864 556677788899999999988765432 22334455677888889999999987665 6677788
Q ss_pred HhCCc
Q 002352 229 NEIGL 233 (932)
Q Consensus 229 ~~~g~ 233 (932)
.+.|+
T Consensus 82 ~~~~i 86 (276)
T 3jy6_A 82 LHQQM 86 (276)
T ss_dssp HTTSS
T ss_pred HHCCC
Confidence 87776
No 269
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=49.98 E-value=33 Score=34.92 Aligned_cols=84 Identities=8% Similarity=0.044 Sum_probs=57.7
Q ss_pred CCeEEEEEEEc---CCcCCChHHHHHHHHHhC-CceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChh-hHHHH
Q 002352 150 GWREAVPIYVD---NQYGEEMIPSLTDALQAI-DTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS-LGSRI 224 (932)
Q Consensus 150 ~w~~v~ii~~d---~~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~-~~~~l 224 (932)
.-++|+++..+ +.|...+...+.+++++. |..+..........+.......+..+...+.|.||+..... .....
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~ 86 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGF 86 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHH
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHH
Confidence 34678888754 456677788888899888 77665543322223444556778888889999999876544 34667
Q ss_pred HHHHHhCCc
Q 002352 225 FEKANEIGL 233 (932)
Q Consensus 225 ~~~a~~~g~ 233 (932)
++.+.+.|+
T Consensus 87 ~~~~~~~~i 95 (304)
T 3gbv_A 87 TDALNELGI 95 (304)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHCCC
Confidence 777877775
No 270
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=49.87 E-value=31 Score=36.52 Aligned_cols=109 Identities=9% Similarity=0.002 Sum_probs=68.4
Q ss_pred CceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHh
Q 002352 126 SYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLF 205 (932)
Q Consensus 126 p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~ 205 (932)
|+-+...+.... .+.++++.++.+++.+|+....+. ...+.+.+.|++.|+++...... ++.+.+.+.+. ..++
T Consensus 12 p~~i~~G~g~~~---~l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~-~~~~~~~v~~~-~~~~ 85 (354)
T 3ce9_A 12 PLILEVGNNKIY---NIGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVETV-KNIDFDEIGTN-AFKI 85 (354)
T ss_dssp CSEEEEESSCGG---GHHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEEE-CCCBHHHHHHH-HTTS
T ss_pred CcEEEECCCHHH---HHHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeEEEEecC-CCCCHHHHHHH-HHhh
Confidence 444444444332 266777778888999998655433 45678888898888876533322 34466677777 7788
Q ss_pred cCCceEEEEEeChh--hHHHHHHHHHhCCccccceEEEEecc
Q 002352 206 TMQTRVFILHMLPS--LGSRIFEKANEIGLMNKGCVWIMTEG 245 (932)
Q Consensus 206 ~~~~~viil~~~~~--~~~~l~~~a~~~g~~~~~~~wi~t~~ 245 (932)
+.+.|+||-.+.+. ++..++.. ..| ..++-|-|..
T Consensus 86 ~~~~d~IIavGGGsv~D~aK~vA~--~~~---~p~i~IPTT~ 122 (354)
T 3ce9_A 86 PAEVDALIGIGGGKAIDAVKYMAF--LRK---LPFISVPTST 122 (354)
T ss_dssp CTTCCEEEEEESHHHHHHHHHHHH--HHT---CCEEEEESCC
T ss_pred hcCCCEEEEECChHHHHHHHHHHh--hcC---CCEEEecCcc
Confidence 88999999776654 34444442 223 2345555544
No 271
>3fd3_A Chromosome replication initiation inhibitor prote; structural genomics, LYSR, PSI-2, structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=49.65 E-value=34 Score=32.11 Aligned_cols=68 Identities=6% Similarity=-0.061 Sum_probs=41.3
Q ss_pred EEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeeccccccccccccccccCeEEEE
Q 002352 470 GYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIV 549 (932)
Q Consensus 470 G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv 549 (932)
.+-..++..+.++.+ +++++.... ..+++..+.+|..|+++..- +.....+. +.++....+++++
T Consensus 15 ~~l~~~l~~f~~~~~--v~l~l~~~~---------~~~~~~~l~~g~d~~~i~~~---~~~~~~l~-~~~l~~~~~~~v~ 79 (208)
T 3fd3_A 15 TWFLDAVSKFTGGSD--YLVNIAVDD---------QDHTVEWLRGGRVLAAVTAH---DKPVQGCR-VTPLGVLRYHATA 79 (208)
T ss_dssp TTHHHHHHHHHHTSS--CEEEEEECC---------SSCHHHHHHTTSCSEEEESC---CSCCTTCE-EEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhcC--eEEEEEeCC---------cHhHHHHHhcCcceEEEecC---CCCCCCce-EEEccceEEEEEE
Confidence 355688899998885 566665533 35688899999555544321 11122232 3567777777777
Q ss_pred Ecc
Q 002352 550 PIK 552 (932)
Q Consensus 550 ~~~ 552 (932)
+..
T Consensus 80 ~~~ 82 (208)
T 3fd3_A 80 SPD 82 (208)
T ss_dssp CHH
T ss_pred ChH
Confidence 543
No 272
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=49.55 E-value=2e+02 Score=30.99 Aligned_cols=131 Identities=12% Similarity=0.111 Sum_probs=0.0
Q ss_pred eEEEEEEEcCCcC--CChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeCh------hhHHH
Q 002352 152 REAVPIYVDNQYG--EEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP------SLGSR 223 (932)
Q Consensus 152 ~~v~ii~~d~~~g--~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~------~~~~~ 223 (932)
++|+|+| .+.|| +.+++.+.+.+.+.|+++..........++ ...++..+ .+++.+++.++. +....
T Consensus 266 ~~v~I~Y-~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~--~s~i~~~i--~~~~~ivlGspT~~~~~~p~~~~ 340 (410)
T 4dik_A 266 GKVTVIY-DSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPA--ISEILKDI--PDSEALIFGVSTYEAEIHPLMRF 340 (410)
T ss_dssp TEEEEEE-ECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCC--HHHHHHHS--TTCSEEEEEECCTTSSSCHHHHH
T ss_pred cceeeEE-ecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCC--HHHHHHHH--HhCCeEEEEeCCcCCcCCHHHHH
Q ss_pred HHHHHHhCCccccceEEEEecccchhcccCChhhhhhc----cceEEEeecCCCChhHHHHHHHHHHh
Q 002352 224 IFEKANEIGLMNKGCVWIMTEGMTNLLRTLEPSVIDSM----QGVIGVRPYVPKTKAFENFRVRWKRK 287 (932)
Q Consensus 224 l~~~a~~~g~~~~~~~wi~t~~~~~~~~~~~~~~~~~~----~g~l~~~~~~~~~~~~~~f~~~~~~~ 287 (932)
++.........++.-..+.+-+|+...--.-.+.++.+ .+..-+....++....++..+..++.
T Consensus 341 ~l~~l~~~~~~~K~~~~FGSyGWsg~a~~~~~~~l~~~~~~~v~~~~~~~~~~de~~lee~~~~~~~~ 408 (410)
T 4dik_A 341 TLLEIIDKANYEKPVLVFGVHGWAPSAERTAGELLKETKFRILSFTEIKGSNMDERKIEEAISLLKKE 408 (410)
T ss_dssp HHHHHHHHCCCCCEEEEEEECCCCCTTSCCHHHHHTTSSCEEEEEEEECSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCEEEEEECCCCCcHHHHHHHHHHHHCCCEEECcEEEECCCCCHHHHHHHHHHHHHh
No 273
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=49.42 E-value=34 Score=34.61 Aligned_cols=79 Identities=8% Similarity=0.094 Sum_probs=57.8
Q ss_pred eEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeCh-hhHHHHHHHH
Q 002352 152 REAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-SLGSRIFEKA 228 (932)
Q Consensus 152 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~l~~~a 228 (932)
++|+++..+ +.|.......+.+++++.|..+..... ..+.......++.+.+.+.|.||+.... ......++.+
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA---GRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKI 82 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 578888864 556667788899999999988765432 2334445667788888899999987654 4566778888
Q ss_pred HhCCc
Q 002352 229 NEIGL 233 (932)
Q Consensus 229 ~~~g~ 233 (932)
.+.|+
T Consensus 83 ~~~~i 87 (291)
T 3l49_A 83 NDAGI 87 (291)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88876
No 274
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=48.63 E-value=5.9 Score=42.86 Aligned_cols=63 Identities=14% Similarity=-0.012 Sum_probs=48.1
Q ss_pred CCCCCHHHHHhCCCcEEEEcChhHHHHHHh-------cCCCcccccccCCHHHHHHHhhcccCCCceeEEEeccccccc
Q 002352 661 PTITDFQMLIKSGDNVGYRKDSFVFGILKQ-------LGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKP 732 (932)
Q Consensus 661 ~~i~s~~dL~~~~~~vg~~~~s~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~ 732 (932)
..|++++||. | ||++.+...+.+... .+. ..+++.|++..+++.+|.+|+ ++|++.+..+...
T Consensus 26 s~i~sl~DLk--g--vgv~~~~~~~~~~~~~~~i~~~~g~-~~~~~~y~~~~~a~~aL~nG~----vDAiv~~~~~~~~ 95 (398)
T 2xxp_A 26 SEIENVTQLT--S--VTAPTGTDNENIQKLLADIKSSQNT-DLTVNQSSSYLAAYKSLIAGE----TKAIVLNSVFENI 95 (398)
T ss_dssp CSCCSGGGCS--E--EEECTTTSHHHHHHHHHHHHHHSCC-CCEEEECSSHHHHHHHHHTTS----CSCEEEEHHHHHH
T ss_pred CCcCCHHHhc--C--eeeECCCCHHHHHHHHHHHHHhhCC-cceEEecCCHHHHHHHHHcCC----CCEEEEchHHHHH
Confidence 5799999998 5 999998766655432 122 235789999999999999999 9999887655443
No 275
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=48.40 E-value=1.3e+02 Score=30.51 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=42.3
Q ss_pred HHHHHHHHHC-CCcccEEEEeccCCCCCCCCCHHHHHHHHHc-Cc-ccEEEeeeeeec---cccccccccccccccCeEE
Q 002352 474 AVFKAVIEEL-PYAVAYDFVPYAQPDGTSSGSYNDLMYQVFR-GK-FDAVVGDTTILA---NRSKFVEFTLPYTESGVSM 547 (932)
Q Consensus 474 dl~~~la~~l-~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~-g~-~D~~~~~~~it~---~R~~~vdfs~p~~~~~~~~ 547 (932)
++++.+.++. | +++++.. ++-..++.+|.+ |. +|+.++.-.... .....++...||....+++
T Consensus 21 ~l~~~F~~~~~g--i~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvi 89 (292)
T 3cfz_A 21 EYEKMFEKEHPN--VDVEREP---------AGSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFARNEIVL 89 (292)
T ss_dssp HHHHHHHHHCTT--EEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCEEE
T ss_pred HHHHHHHHHCCC--ceEEEEe---------CCHHHHHHHHHhcCCCCcEEEECChHHHHHHHhCCCccceeeeEeccEEE
Confidence 6677777763 6 4444433 235678999988 75 999875321111 1122344567888888999
Q ss_pred EEEcc
Q 002352 548 IVPIK 552 (932)
Q Consensus 548 lv~~~ 552 (932)
++++.
T Consensus 90 ~~~~~ 94 (292)
T 3cfz_A 90 AYTDK 94 (292)
T ss_dssp EECTT
T ss_pred EEcCC
Confidence 98765
No 276
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=48.39 E-value=41 Score=35.08 Aligned_cols=87 Identities=10% Similarity=0.023 Sum_probs=55.1
Q ss_pred HHHHHHcCCeEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhh
Q 002352 143 TAIIKAFGWREAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSL 220 (932)
Q Consensus 143 ~~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~ 220 (932)
+.-++...-+.|+++..+ ++|...+...+.+++.+.|..+..... ..+...-...+..+...+.|.||+......
T Consensus 54 a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~ 130 (339)
T 3h5o_A 54 ASTLASAKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNS---HYDAGQELQLLRAYLQHRPDGVLITGLSHA 130 (339)
T ss_dssp ---------CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHTTCCSEEEEECSCCC
T ss_pred HHhhhcCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 333433344678888864 567778889999999999988764322 223444556778888899999998764332
Q ss_pred HHHHHHHHHhCCc
Q 002352 221 GSRIFEKANEIGL 233 (932)
Q Consensus 221 ~~~l~~~a~~~g~ 233 (932)
. ..++.+.+.|+
T Consensus 131 ~-~~~~~l~~~~i 142 (339)
T 3h5o_A 131 E-PFERILSQHAL 142 (339)
T ss_dssp T-THHHHHHHTTC
T ss_pred H-HHHHHHhcCCC
Confidence 2 45666777675
No 277
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=48.26 E-value=27 Score=37.25 Aligned_cols=95 Identities=14% Similarity=0.068 Sum_probs=62.7
Q ss_pred HHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChh--
Q 002352 142 ITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS-- 219 (932)
Q Consensus 142 i~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~-- 219 (932)
+.++++.+| +++.+|+....+. ...+.+.+.|.+.|+.+.+ ..+....+.+.+...+..+++.++|+||-.+.+.
T Consensus 23 l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~-~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGsv~ 99 (370)
T 1jq5_A 23 IANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEE-VVFSGEASRNEVERIANIARKAEAAIVIGVGGGKTL 99 (370)
T ss_dssp HHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEE-EECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHH
T ss_pred HHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEE-EeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHH
Confidence 566777778 8999988654433 4678888899888988753 3343344555777778888888999999776654
Q ss_pred hHHHHHHHHHhCCccccceEEEEec
Q 002352 220 LGSRIFEKANEIGLMNKGCVWIMTE 244 (932)
Q Consensus 220 ~~~~l~~~a~~~g~~~~~~~wi~t~ 244 (932)
++..++.. ..| ..++-|-|.
T Consensus 100 D~aK~iA~--~~~---~p~i~IPTT 119 (370)
T 1jq5_A 100 DTAKAVAD--ELD---AYIVIVPTA 119 (370)
T ss_dssp HHHHHHHH--HHT---CEEEEEESS
T ss_pred HHHHHHHH--hcC---CCEEEeccc
Confidence 34444442 223 345555554
No 278
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=48.22 E-value=37 Score=34.53 Aligned_cols=61 Identities=11% Similarity=-0.032 Sum_probs=41.3
Q ss_pred HHhCCCcEEEE-cChhHHH----HHHhcCCCcccccccC-CHHHHHHHhhcccCCCceeEEEeccccccccccc
Q 002352 669 LIKSGDNVGYR-KDSFVFG----ILKQLGFDEKKLIAYS-SPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQ 736 (932)
Q Consensus 669 L~~~~~~vg~~-~~s~~~~----~l~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~ 736 (932)
|. |++|++. .|+..+. +|++.+. +.++.... +..+...++.+|+ +||.+.-.++......+
T Consensus 94 Lk--GK~Iav~~~gs~~~~ll~~~L~~~Gl-dv~~~~~~~~~~~~~~al~~G~----vDa~~~~eP~~~~a~~~ 160 (283)
T 3hn0_A 94 LK--EPALYVFGNGTTPDILTRYYLGRQRL-DYPLNYAFNTAGEITQGILAGK----VNRAVLGEPFLSIALRK 160 (283)
T ss_dssp CC--SCCEECSSTTSHHHHHHHHHHHHHTC-CCCEECSCCSHHHHHHHHHHTS----CSEEEECTTHHHHHHHH
T ss_pred CC--CCEEEecCCCCcHHHHHHHHHHHcCC-ceEEEEccCCHHHHHHHHHcCC----CCEEEecccHHHHHHhh
Confidence 65 9999975 5665443 3444555 34444444 6899999999999 99988877766554433
No 279
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=48.17 E-value=28 Score=36.56 Aligned_cols=80 Identities=9% Similarity=0.070 Sum_probs=57.7
Q ss_pred CeEEEEEEEc--C-CcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhc--CCceEEEEEeChhhHHHHH
Q 002352 151 WREAVPIYVD--N-QYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIF 225 (932)
Q Consensus 151 w~~v~ii~~d--~-~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~l~ 225 (932)
-.+|++|..+ + +|.......+.+++++.|..+..... ..+...-...+..+.+ .++|.||+.........++
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~ 79 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYA---ERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQIL 79 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEEC---CCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHH
Confidence 3678998864 2 67778889999999999988765422 2233344556667666 5999999976555667788
Q ss_pred HHHHhCCc
Q 002352 226 EKANEIGL 233 (932)
Q Consensus 226 ~~a~~~g~ 233 (932)
+.+.+.|+
T Consensus 80 ~~~~~~gi 87 (350)
T 3h75_A 80 RLSQGSGI 87 (350)
T ss_dssp HHHTTSCC
T ss_pred HHHHhCCC
Confidence 88888886
No 280
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=47.95 E-value=27 Score=35.05 Aligned_cols=119 Identities=13% Similarity=0.027 Sum_probs=66.1
Q ss_pred HHHHHHHHhcCCeEEEEccCChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCC
Q 002352 72 AAAALDLLNNVLVQAILGPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGW 151 (932)
Q Consensus 72 ~~~a~~li~~~~v~aiiGp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w 151 (932)
.+.+..| .+.++.+|+-+..+..+..+..+.+..++|+|... -.++...++..+-
T Consensus 52 ~~~~~~L-~~~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi~------------------------e~~~~~A~~~~~~ 106 (254)
T 1b73_A 52 LECAGFL-KDKGVDIIVVACNTASAYALERLKKEINVPVFGVI------------------------EPGVKEALKKSRN 106 (254)
T ss_dssp HHHHHHH-HTTTCSEEEECCHHHHTTSHHHHHHHSSSCEEESH------------------------HHHHHHHHHHCSS
T ss_pred HHHHHHH-HHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeee------------------------HHHHHHHHHccCC
Confidence 3344444 44699999986666654456666666789988731 0112222333466
Q ss_pred eEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeee---cCC-CCC-------hhHHHHHHHHHhcCCceEEEEEeChh
Q 002352 152 REAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSV---ISP-LAT-------DDQIEKELYKLFTMQTRVFILHMLPS 219 (932)
Q Consensus 152 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~---~~~-~~~-------~~~~~~~l~~l~~~~~~viil~~~~~ 219 (932)
++|+++......-. ...++.++..|.++..... ++. ... ...+...+..+.+. +|+||+.|..-
T Consensus 107 ~rigVlaT~~T~~~---~~y~~~l~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IILGCT~~ 181 (254)
T 1b73_A 107 KKIGVIGTPATVKS---GAYQRKLEEGGADVFAKACPLFAPLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLILGCTHY 181 (254)
T ss_dssp CEEEEEECHHHHHH---CHHHHHHHTTSCEEEEEECCCCTTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEECCCCT
T ss_pred CEEEEEEChHHhhh---HHHHHHHHcCCCEEEecCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEECccCh
Confidence 89999986543211 2345566667777642111 110 001 12344455555555 99999988754
No 281
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=47.30 E-value=45 Score=33.75 Aligned_cols=79 Identities=11% Similarity=0.070 Sum_probs=57.5
Q ss_pred eEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChh----hHHHHH
Q 002352 152 REAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS----LGSRIF 225 (932)
Q Consensus 152 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~----~~~~l~ 225 (932)
+.|+++..+ ++|.......+.+++++.|..+..... ..+...-...++.+...+.|.||+..... .....+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 92 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTST---NNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYY 92 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHH
Confidence 789999864 567777889999999999988765432 22344455677788889999999875432 345677
Q ss_pred HHHHhCCc
Q 002352 226 EKANEIGL 233 (932)
Q Consensus 226 ~~a~~~g~ 233 (932)
+.+.+.|+
T Consensus 93 ~~~~~~~i 100 (298)
T 3tb6_A 93 LNLEKNGI 100 (298)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 78888776
No 282
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=46.01 E-value=37 Score=35.12 Aligned_cols=79 Identities=10% Similarity=0.053 Sum_probs=57.3
Q ss_pred eEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChh-hHHHHHHHH
Q 002352 152 REAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS-LGSRIFEKA 228 (932)
Q Consensus 152 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~-~~~~l~~~a 228 (932)
++|+++..+ ++|...+...+.+++++.|..+..... ..+...-...+..+.+.+.|.||+..... .....++++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYA---DDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQA 80 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeC---CCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHH
Confidence 578888864 567777888999999999988765432 22334455667777778899999876543 456778888
Q ss_pred HhCCc
Q 002352 229 NEIGL 233 (932)
Q Consensus 229 ~~~g~ 233 (932)
.+.|+
T Consensus 81 ~~~gi 85 (330)
T 3uug_A 81 GEQGI 85 (330)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88876
No 283
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=45.57 E-value=1.4e+02 Score=29.40 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=28.4
Q ss_pred HHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002352 475 VFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVG 522 (932)
Q Consensus 475 l~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~ 522 (932)
.++.++++-| ++++++.+. .|.....+|.+|++|+...
T Consensus 21 ~v~~~l~k~G--i~veiv~F~--------dy~~pN~AL~~G~iD~n~f 58 (246)
T 4ef1_A 21 HVKPLLEKEG--VKLEVTTYT--------DYVLPNKALESGDIDANYF 58 (246)
T ss_dssp HHHHHHHHTT--EEEEEEECS--------SSSHHHHHHHHTSCSEEEE
T ss_pred HHHHHHHhcC--CEEEEEEeC--------CchhHHHHHHCCCCCEEec
Confidence 3455666678 567888876 4778888999999998753
No 284
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=44.48 E-value=38 Score=34.25 Aligned_cols=80 Identities=9% Similarity=0.151 Sum_probs=56.7
Q ss_pred CeEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChh-hHHHHHHH
Q 002352 151 WREAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS-LGSRIFEK 227 (932)
Q Consensus 151 w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~-~~~~l~~~ 227 (932)
-++|+++..+ ++|.......+.+++++.|..+..... ..+.......++.+.+.+.|.||+..... .....+++
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~ 84 (293)
T 3l6u_A 8 RNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATS---QNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEE 84 (293)
T ss_dssp -CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---SSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHH
T ss_pred CcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHH
Confidence 3678888864 556677788899999999988765432 23344455777788888999998875543 34567788
Q ss_pred HHhCCc
Q 002352 228 ANEIGL 233 (932)
Q Consensus 228 a~~~g~ 233 (932)
+.+.|+
T Consensus 85 ~~~~~i 90 (293)
T 3l6u_A 85 AKKAGI 90 (293)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 888776
No 285
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=44.41 E-value=32 Score=35.19 Aligned_cols=80 Identities=16% Similarity=0.171 Sum_probs=57.0
Q ss_pred eEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeCh-hhHHHHHHHH
Q 002352 152 REAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-SLGSRIFEKA 228 (932)
Q Consensus 152 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~l~~~a 228 (932)
++++++..+ ++|.......+.+++++.|..+..... ...+.......++.+.+.+.|.||+.... ......++++
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGA--AQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKA 82 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEEC--SSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCC--CcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHH
Confidence 578888754 567777888899999999988865321 22344455667777888899999886544 3346678888
Q ss_pred HhCCc
Q 002352 229 NEIGL 233 (932)
Q Consensus 229 ~~~g~ 233 (932)
.+.|+
T Consensus 83 ~~~~i 87 (305)
T 3g1w_A 83 VDAGI 87 (305)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88776
No 286
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=44.37 E-value=30 Score=23.94 Aligned_cols=15 Identities=7% Similarity=0.197 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhhccc
Q 002352 827 IIFLAVFVCEHRNVL 841 (932)
Q Consensus 827 ~vf~~E~~~~~~~~~ 841 (932)
+++++.+++++|++.
T Consensus 27 i~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 27 VALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhhhhHhh
Confidence 333444455554443
No 287
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=44.10 E-value=20 Score=35.38 Aligned_cols=82 Identities=15% Similarity=0.086 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCeEEEEccCChhHHHHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHHHcCCe
Q 002352 73 AAALDLLNNVLVQAILGPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIKAFGWR 152 (932)
Q Consensus 73 ~~a~~li~~~~v~aiiGp~~s~~a~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~ 152 (932)
..+.+.+.+.++.+|+-+..+... .+..+-+..++|+|.. .++.++.++..+-+
T Consensus 66 ~~~~~~L~~~g~~~iviaCNTa~~-~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~~~ 119 (231)
T 3ojc_A 66 SNAAISLKHAGAEVIVVCTNTMHK-VADDIEAACGLPLLHI-------------------------ADATAVQIKQQGID 119 (231)
T ss_dssp HHHHHHHHHHTCCEEEECSSGGGG-GHHHHHHHHCSCBCCH-------------------------HHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCEEEEeCCchHH-HHHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCC
Confidence 333444445599999987776543 3355555567888753 23444444445678
Q ss_pred EEEEEEEcCCcCCChHHHHHHHHHhC-Cceee
Q 002352 153 EAVPIYVDNQYGEEMIPSLTDALQAI-DTRVP 183 (932)
Q Consensus 153 ~v~ii~~d~~~g~~~~~~l~~~l~~~-g~~v~ 183 (932)
+|+++......-. ..+++.+++. |+++.
T Consensus 120 rVgvLaT~~T~~s---~~y~~~l~~~~g~~v~ 148 (231)
T 3ojc_A 120 KIGLLGTRYTMEQ---GFYRGRLTEKHGIEVI 148 (231)
T ss_dssp EEEEESCHHHHHS---TTTHHHHHHTTCCEEE
T ss_pred EEEEEcCHHHhhc---hHHHHHHHhcCCCEEE
Confidence 9999876532211 2234555555 77653
No 288
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=43.38 E-value=1.1e+02 Score=31.66 Aligned_cols=82 Identities=11% Similarity=-0.059 Sum_probs=50.6
Q ss_pred ccCCHHHHHHHhhcccCCCceeEEEecccccccccccCCcceEEecc--cccccceEEEecCCCCChHHHHHHHHhhhcc
Q 002352 700 AYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYCSKYTLIER--TFETAGFGFAFPLHSPLVPEVSRAILNVTEG 777 (932)
Q Consensus 700 ~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~s~l~~~in~~il~l~e~ 777 (932)
.+.+..+..+.+.+|+ ++..+.....+..+.....+ +..+-+ .......+++++++++-.+.-.+.|..+.+.
T Consensus 215 ~~~~~~~~~~~f~~G~----~a~~~~~~~~~~~~~~~~~~-~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~ 289 (351)
T 4edp_A 215 TYSKSSDLANMFSNGE----IVAAVASDFAFGTISKAKPE-VINVIPESGTYLNFNTININKNSKNKDLAYEFINYALSK 289 (351)
T ss_dssp EECCHHHHHHHHHTTS----CSEEEEEHHHHHHHHHHCTT-CEEECCTTCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSH
T ss_pred ccCChHHHHHHHHcCC----EEEEecCcHHHHHHHhcCCC-eeeeCCCCCcccceeeEEEECCCCCHHHHHHHHHHhcCH
Confidence 3456778889999999 77777654444433333322 333321 1122345789999999888888888777765
Q ss_pred chHHHHHHH
Q 002352 778 NKMKEIEDE 786 (932)
Q Consensus 778 G~~~~~~~~ 786 (932)
.....+.+.
T Consensus 290 e~q~~~~~~ 298 (351)
T 4edp_A 290 EVQEKTAKA 298 (351)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 544445443
No 289
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=42.09 E-value=21 Score=36.20 Aligned_cols=56 Identities=11% Similarity=0.224 Sum_probs=47.4
Q ss_pred cccccchhhhHHHHhhhcC--cccccccchhhhHHHHHHHHHhhhhhhhhhhhhhhhc
Q 002352 601 QHQVGTSFWFSFSTMVFSH--RERVISNLARFVMIVWYFVVLILTQSYTASLSSLLTV 656 (932)
Q Consensus 601 ~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 656 (932)
..++.+++|+++.++...| .-.|.+..+|++.+++.++++.+...+.+.+...+..
T Consensus 91 ~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 91 NWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp CSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567789999999999776 3467899999999999999999999999988776543
No 290
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=41.99 E-value=35 Score=23.60 Aligned_cols=11 Identities=0% Similarity=0.075 Sum_probs=4.7
Q ss_pred HHHHHHhhccc
Q 002352 831 AVFVCEHRNVL 841 (932)
Q Consensus 831 ~E~~~~~~~~~ 841 (932)
+.+++++|++.
T Consensus 30 ~~~~~RRRr~~ 40 (44)
T 2l2t_A 30 FAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHTTCSS
T ss_pred HHHHhhhhhhh
Confidence 33444444443
No 291
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=41.95 E-value=27 Score=35.69 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=41.8
Q ss_pred cccccchhhhHHHHhhhcC-c-cc--cc----ccchhhhHHHHHHHHHhhhhhhhhhhhhhhhccc
Q 002352 601 QHQVGTSFWFSFSTMVFSH-R-ER--VI----SNLARFVMIVWYFVVLILTQSYTASLSSLLTVQQ 658 (932)
Q Consensus 601 ~~~~~~~~~~~~~~l~~~~-~-~~--~~----s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~ 658 (932)
-.++.+++|+.+.+++..+ + +. |. ..+.+++....++.++++.+.++|-+.+.+....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999776 4 32 32 2334777778888889999999999999876543
No 292
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=41.69 E-value=52 Score=34.60 Aligned_cols=87 Identities=9% Similarity=0.010 Sum_probs=54.2
Q ss_pred HHHHHHcCCeEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhh
Q 002352 143 TAIIKAFGWREAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSL 220 (932)
Q Consensus 143 ~~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~ 220 (932)
+.-++.-.-+.|+++..+ +.|...+...+.+++.+.|..+..... ..+...-...+..+...+.|.+|+......
T Consensus 62 a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~ 138 (355)
T 3e3m_A 62 AGSLTTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYT---AYSPEREEQLVETMLRRRPEAMVLSYDGHT 138 (355)
T ss_dssp ---------CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTCCSEEEEECSCCC
T ss_pred HHhhhcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 333433344678888864 456667788899999999988765422 223344556777788889999998765433
Q ss_pred HHHHHHHHHhCCc
Q 002352 221 GSRIFEKANEIGL 233 (932)
Q Consensus 221 ~~~l~~~a~~~g~ 233 (932)
...++.+.+.|+
T Consensus 139 -~~~~~~l~~~~i 150 (355)
T 3e3m_A 139 -EQTIRLLQRASI 150 (355)
T ss_dssp -HHHHHHHHHCCS
T ss_pred -HHHHHHHHhCCC
Confidence 255667777775
No 293
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=41.12 E-value=61 Score=30.55 Aligned_cols=64 Identities=16% Similarity=0.091 Sum_probs=46.0
Q ss_pred eEEEEEEEcCCc----CCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeC
Q 002352 152 REAVPIYVDNQY----GEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML 217 (932)
Q Consensus 152 ~~v~ii~~d~~~----g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 217 (932)
-+|++|...|+- -......+...+++.|.++.....++ ++.+.+.+.+.+..+.+.|+||..+.
T Consensus 31 ~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~--Dd~~~I~~al~~a~~~~~DlVIttGG 98 (185)
T 3rfq_A 31 GRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVE--ADEVDIRNALNTAVIGGVDLVVSVGG 98 (185)
T ss_dssp EEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEEC--SCHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred CEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHhCCCCEEEECCC
Confidence 468888764432 24456778889999999988777765 44566888887765567899988753
No 294
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=40.89 E-value=83 Score=29.06 Aligned_cols=66 Identities=9% Similarity=0.091 Sum_probs=48.0
Q ss_pred CCeEEEEEEEcCCcCC---ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhc-CCceEEEEEeC
Q 002352 150 GWREAVPIYVDNQYGE---EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFILHML 217 (932)
Q Consensus 150 ~w~~v~ii~~d~~~g~---~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~ 217 (932)
.--++++|...|+-|. .....+.+.+++.|..+.....++ ++.+.+.+.+.+..+ .++|+||..+.
T Consensus 12 ~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~--Dd~~~i~~~l~~~~~~~~~DlVittGG 81 (169)
T 1y5e_A 12 KEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVK--DDKESIQQAVLAGYHKEDVDVVLTNGG 81 (169)
T ss_dssp CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEEC--SSHHHHHHHHHHHHTCTTCSEEEEECC
T ss_pred cCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 3458999987776652 235678888999999988776665 455678888887765 37899988754
No 295
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=40.57 E-value=53 Score=33.41 Aligned_cols=78 Identities=14% Similarity=0.086 Sum_probs=56.3
Q ss_pred eEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeCh-hhHHHHHHHH
Q 002352 152 REAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-SLGSRIFEKA 228 (932)
Q Consensus 152 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~l~~~a 228 (932)
.+|+++..+ ++|.....+.+.+++++.|..+..... .+.......++.+.+.+.|.||+.... ......++.+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~ 78 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV----PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKA 78 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC----CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHH
Confidence 367888764 566677788899999999988764322 244455677888888899999887654 4456678888
Q ss_pred HhCCc
Q 002352 229 NEIGL 233 (932)
Q Consensus 229 ~~~g~ 233 (932)
.+.|+
T Consensus 79 ~~~~i 83 (306)
T 8abp_A 79 RGYDM 83 (306)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88876
No 296
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=40.44 E-value=2.1e+02 Score=29.93 Aligned_cols=131 Identities=9% Similarity=0.123 Sum_probs=73.9
Q ss_pred EEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEE--ccCChhHHH
Q 002352 20 NVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAIL--GPEKSMQTN 97 (932)
Q Consensus 20 ~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aii--Gp~~s~~a~ 97 (932)
.|+.+|..++. +-+.+++.|+.++.. ..+.+...+++-.-.+.+.-..+.++.- +++|+ ++ ...
T Consensus 43 ~la~lF~epST---RTR~SFE~A~~~LGg------~vi~l~~~~ssl~kgEsl~DTarvLs~y-~D~IviR~~-~~~--- 108 (355)
T 4a8p_A 43 SLGMIFQQSST---RTRVSFETAMEQLGG------HGEYLAPGQIQLGGHETIEDTSRVLSRL-VDILMARVE-RHH--- 108 (355)
T ss_dssp EEEEEESSCCS---HHHHHHHHHHHHTTC------EEEEECBTTBCBTTTBCHHHHHHHHTTT-CSEEEEECS-SHH---
T ss_pred EEEEEecCCCh---hhHhhHHHHHHHcCC------eEEEeCcccccCCCCcCHHHHHHHHHHh-CCEEEEecC-cHH---
Confidence 57888876653 447789999887632 2343333333222222333344444442 44443 33 223
Q ss_pred HHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHH---HHc--C--C--eEEEEEEEcCCcCCChH
Q 002352 98 FIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAII---KAF--G--W--REAVPIYVDNQYGEEMI 168 (932)
Q Consensus 98 ~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~~--~--w--~~v~ii~~d~~~g~~~~ 168 (932)
.+..+++..++|+|.-+. +..+| .+++++++ .++ | + .+|+++- |. ....
T Consensus 109 ~~~~lA~~~~vPVINag~------~~~HP------------tQaLaDl~TI~E~~~~G~~l~glkva~vG--D~--~rva 166 (355)
T 4a8p_A 109 SIVDLANCATIPVINGMS------DYNHP------------TQELGDLCTMVEHLPEGKKLEDCKVVFVG--DA--TQVC 166 (355)
T ss_dssp HHHHHHHHCSSCEEECCC------SSCCH------------HHHHHHHHHHHHTCCTTCCGGGCEEEEES--CC--CHHH
T ss_pred HHHHHHHhCCCCEEeCCC------CCCCc------------HHHHHHHHHHHHHhhcCCCCCCCEEEEEC--CC--chhH
Confidence 334445556799998432 22233 66777775 556 5 3 4565543 33 5678
Q ss_pred HHHHHHHHhCCceeeeee
Q 002352 169 PSLTDALQAIDTRVPYRS 186 (932)
Q Consensus 169 ~~l~~~l~~~g~~v~~~~ 186 (932)
..+..++...|.++....
T Consensus 167 ~Sl~~~~~~~G~~v~~~~ 184 (355)
T 4a8p_A 167 FSLGLITTKMGMNFVHFG 184 (355)
T ss_dssp HHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHcCCEEEEEC
Confidence 889999999998876653
No 297
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=40.33 E-value=31 Score=34.88 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=26.4
Q ss_pred HHhcCCeEEEEccCChhHHHHHHHhcCCC-CccEEe
Q 002352 78 LLNNVLVQAILGPEKSMQTNFIIQLGNKS-QVPILS 112 (932)
Q Consensus 78 li~~~~v~aiiGp~~s~~a~~v~~~~~~~-~iP~Is 112 (932)
.+.+.++.+|+-+..+..+.++..+-+.. ++|+|.
T Consensus 64 ~L~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvig 99 (268)
T 3out_A 64 FLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVID 99 (268)
T ss_dssp HHHHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEe
Confidence 33446999999977766665667777777 899997
No 298
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=40.30 E-value=40 Score=33.67 Aligned_cols=122 Identities=15% Similarity=0.042 Sum_probs=69.3
Q ss_pred ccEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhc-CCeEEEEccCChh
Q 002352 17 IPVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNN-VLVQAILGPEKSM 94 (932)
Q Consensus 17 ~~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~~v~aiiGp~~s~ 94 (932)
+.-+||++....+ .....-..|+.-|+++. .|.++. .+.....+...+.+.+.+++.. +++.||+... ..
T Consensus 126 G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-d~ 197 (276)
T 3ksm_A 126 KERNIALLRLRAGNASTDQREQGFLDVLRKH------DKIRII-AAPYAGDDRGAARSEMLRLLKETPTIDGLFTPN-ES 197 (276)
T ss_dssp SCEEEEECBCCTTCHHHHHHHHHHHHHHTTC------TTEEEE-ECCBCCSSHHHHHHHHHHHHHHCSCCCEEECCS-HH
T ss_pred CCceEEEEEcCCCchhHHHHHHHHHHHHHhC------CCcEEE-EEecCCCcHHHHHHHHHHHHHhCCCceEEEECC-ch
Confidence 4567888865433 33445567777776543 134444 3344556788888889998876 3689999854 44
Q ss_pred HHHHHHHhcCCCC----ccEEecccCCCCccCCCCCce-EecccCchhHHHHHHHHH
Q 002352 95 QTNFIIQLGNKSQ----VPILSFSATSPSLTSIRSSYF-FRGSLNDSSQVGAITAII 146 (932)
Q Consensus 95 ~a~~v~~~~~~~~----iP~Is~~a~~~~l~~~~~p~~-~r~~ps~~~~~~ai~~~l 146 (932)
.+..+...+.+.+ +.++++............|.+ -.+..+...++...++++
T Consensus 198 ~a~g~~~al~~~g~p~di~vig~d~~~~~~~~~~~~~l~ttv~~~~~~~g~~a~~~l 254 (276)
T 3ksm_A 198 TTIGALVAIRQSGMSKQFGFIGFDQTEELEAAMYAGEISNLVVQNPEYMGYLAVQRA 254 (276)
T ss_dssp HHHHHHHHHHHTTCTTSSEEEEESCCHHHHHHHHTTSSSEEEECCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHcCCCCCeEEEEeCCCHHHHHHHHcCCceEEEEeCHHHhHHHHHHHH
Confidence 4554555555555 446766543322111112222 334445556666666555
No 299
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=39.77 E-value=43 Score=34.23 Aligned_cols=87 Identities=13% Similarity=0.037 Sum_probs=53.4
Q ss_pred HHHHHHcCCeEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhh
Q 002352 143 TAIIKAFGWREAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSL 220 (932)
Q Consensus 143 ~~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~ 220 (932)
|+-++.-.-+.|+++..+ ++|...+...+.+++++.|..+..... ..+...-...++.+.+.+.|.||+......
T Consensus 7 Ar~L~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 83 (303)
T 3kke_A 7 ARALRHSRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQI---DAPPRGTQQLSRLVSEGRVDGVLLQRREDF 83 (303)
T ss_dssp ----------CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEEC---CSTTHHHHHHHHHHHSCSSSEEEECCCTTC
T ss_pred HHHHhhCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 344444444678888864 567777889999999999988765422 223334556778888899999998765433
Q ss_pred HHHHHHHHHhCCc
Q 002352 221 GSRIFEKANEIGL 233 (932)
Q Consensus 221 ~~~l~~~a~~~g~ 233 (932)
....++.+.+ |+
T Consensus 84 ~~~~~~~l~~-~i 95 (303)
T 3kke_A 84 DDDMLAAVLE-GV 95 (303)
T ss_dssp CHHHHHHHHT-TS
T ss_pred cHHHHHHHhC-CC
Confidence 2225666666 65
No 300
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=39.57 E-value=1.4e+02 Score=25.09 Aligned_cols=57 Identities=9% Similarity=0.151 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeC--hhhHHHHHHHHHhC
Q 002352 166 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML--PSLGSRIFEKANEI 231 (932)
Q Consensus 166 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~l~~~a~~~ 231 (932)
.....+...+.+.|..+... .+ ....+..+.+..+++|++... ..++..++++.++.
T Consensus 14 ~~~~~l~~~L~~~g~~v~~~------~~---~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~ 72 (127)
T 3i42_A 14 AAAETFKELLEMLGFQADYV------MS---GTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRAL 72 (127)
T ss_dssp HHHHHHHHHHHHTTEEEEEE------SS---HHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCEEEE------CC---HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 45677888888888765432 12 334555566688999999854 45678888888886
No 301
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=39.12 E-value=90 Score=29.13 Aligned_cols=67 Identities=12% Similarity=-0.000 Sum_probs=46.7
Q ss_pred cCCeEEEEEEEcCC----------cCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcC-CceEEEEEeC
Q 002352 149 FGWREAVPIYVDNQ----------YGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM-QTRVFILHML 217 (932)
Q Consensus 149 ~~w~~v~ii~~d~~----------~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~-~~~viil~~~ 217 (932)
+.--+|++|...|+ .-......+...+++.|.++.....++ ++.+.+.+.+.+..+. ++|+||..+.
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~--Dd~~~I~~al~~a~~~~~~DlVittGG 90 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVP--DDKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 33457888886542 223446778889999999988776665 4556788888776654 5899988753
No 302
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=39.05 E-value=78 Score=31.80 Aligned_cols=84 Identities=5% Similarity=-0.014 Sum_probs=51.8
Q ss_pred HHHcCCeEEEEEEEc----CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhH
Q 002352 146 IKAFGWREAVPIYVD----NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLG 221 (932)
Q Consensus 146 l~~~~w~~v~ii~~d----~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~ 221 (932)
++.-.-.+|+++..+ ++|.......+.+++++.|..+.... ...+.......++.+...+.|.||+.......
T Consensus 14 L~~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 90 (296)
T 3brq_A 14 LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD---GKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV 90 (296)
T ss_dssp -----CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEEC---CTTSHHHHHHHHHHHHHTTCSEEEEECSSSCH
T ss_pred hhcCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEe---CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCh
Confidence 333344688988854 45667778888999999998875432 22233444566777778899999887653222
Q ss_pred HHHHHHHHh-CCc
Q 002352 222 SRIFEKANE-IGL 233 (932)
Q Consensus 222 ~~l~~~a~~-~g~ 233 (932)
..++.+.+ .|+
T Consensus 91 -~~~~~l~~~~~i 102 (296)
T 3brq_A 91 -DEIDDIIDAHSQ 102 (296)
T ss_dssp -HHHHHHHHTCSS
T ss_pred -HHHHHHHhcCCC
Confidence 34566666 665
No 303
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=38.44 E-value=1.3e+02 Score=28.41 Aligned_cols=70 Identities=10% Similarity=-0.044 Sum_probs=40.7
Q ss_pred cccCCHHHHHHHhhcccCCCceeEEEecccccccccccCCcceEEe-cc-cccccceEEEecCCCCChHHHHHHHHhhh
Q 002352 699 IAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYCSKYTLI-ER-TFETAGFGFAFPLHSPLVPEVSRAILNVT 775 (932)
Q Consensus 699 ~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~~~~~~k~s~l~~~in~~il~l~ 775 (932)
..+++.+...+++..|. --+++.+...... +.. +.+..+ .+ ......++++.+++......+...+..+.
T Consensus 140 ~~~~~~~~~~~~v~~G~----Gia~lp~~~~~~~-l~~--g~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~ 211 (218)
T 2qsx_A 140 VGFEHFYLACEAVRMEK----GLALLPDFMAQFS-ILR--GDIQHIGNLKLHSGYGYYVVIPNFRLTSRKVALFHDWLK 211 (218)
T ss_dssp BCCSSHHHHHHHHHTTC----CBEEEEHHHHHHH-HHT--TSEEEEEEEEEEEEEEEEEECCTTCTTCHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHhCC----CEEEecHHHHHHH-HHC--CCccccCccccCCCceEEEEeccccCCCHHHHHHHHHHH
Confidence 45778899999999998 4555554322222 222 123322 22 12234677888888777777766665443
No 304
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=38.36 E-value=2.1e+02 Score=29.81 Aligned_cols=130 Identities=9% Similarity=0.111 Sum_probs=72.1
Q ss_pred EEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCC---CCHHHHHHHHHHHHhcCCeEEEEccCChhHH
Q 002352 20 NVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSK---GDVVAAAAAALDLLNNVLVQAILGPEKSMQT 96 (932)
Q Consensus 20 ~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~---~~~~~a~~~a~~li~~~~v~aiiGp~~s~~a 96 (932)
.|+.+|..++. +-+.+++.|+.++-. ..+.+...+++ +.+..-......-+. .+.++=++. ..
T Consensus 65 ~la~lF~e~ST---RTR~SFE~A~~~LGg------~~i~l~~~~ssl~kgEsl~DTarvLs~~~--D~IviR~~~-~~-- 130 (339)
T 4a8t_A 65 SLGMIFQQSST---RTRVSFETAMEQLGG------HGEYLAPGQIQLGGHETIEDTSRVLSRLV--DILMARVER-HH-- 130 (339)
T ss_dssp EEEEEESSCCS---HHHHHHHHHHHHTTC------EEEEECCC-CCSSSSSCHHHHHHHHHHHC--SEEEEECSS-HH--
T ss_pred eEEEEecCCCc---hHHHHHHHHHHHcCC------eEEEeCcccccCCCCcCHHHHHHHHHHhC--CEEEEecCc-HH--
Confidence 57888876653 447889999887632 23333222322 322222222222222 344444543 23
Q ss_pred HHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHH---HHc--C--C--eEEEEEEEcCCcCCCh
Q 002352 97 NFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAII---KAF--G--W--REAVPIYVDNQYGEEM 167 (932)
Q Consensus 97 ~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~~--~--w--~~v~ii~~d~~~g~~~ 167 (932)
.+..+++..++|+|.-+. +..+| .+++++++ .++ | . .+|+++- |. ...
T Consensus 131 -~~~~lA~~~~vPVINag~------~~~HP------------tQaLaDl~Ti~e~~~~G~~l~glkva~vG--D~--~rv 187 (339)
T 4a8t_A 131 -SIVDLANCATIPVINGMS------DYNHP------------TQELGDLCTMVEHLPEGKKLEDCKVVFVG--DA--TQV 187 (339)
T ss_dssp -HHHHHHHHCSSCEEECCC------SSCCH------------HHHHHHHHHHHHTCCTTCCGGGCEEEEES--SC--CHH
T ss_pred -HHHHHHHhCCCCEEECCC------CCcCc------------HHHHHHHHHHHHHhhcCCCCCCCEEEEEC--CC--chh
Confidence 333444556799998432 22233 66777775 556 5 3 4565543 33 567
Q ss_pred HHHHHHHHHhCCceeeeee
Q 002352 168 IPSLTDALQAIDTRVPYRS 186 (932)
Q Consensus 168 ~~~l~~~l~~~g~~v~~~~ 186 (932)
+..+..++...|.++....
T Consensus 188 a~Sl~~~~~~~G~~v~~~~ 206 (339)
T 4a8t_A 188 CFSLGLITTKMGMNFVHFG 206 (339)
T ss_dssp HHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEC
Confidence 8889999999998876653
No 305
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=38.24 E-value=1.5e+02 Score=30.49 Aligned_cols=117 Identities=10% Similarity=0.026 Sum_probs=70.6
Q ss_pred EEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEccCChhHHH
Q 002352 19 VNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAILGPEKSMQTN 97 (932)
Q Consensus 19 i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aiiGp~~s~~a~ 97 (932)
=+||++....+ .....-..|+.-|+++.+ .. ........+...+.+++.+++....+.||+.. +...+.
T Consensus 175 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g-------~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~-nd~~A~ 244 (333)
T 3jvd_A 175 MNIAALVGEESLSTTQERMRGISHAASIYG-------AE--VTFHFGHYSVESGEEMAQVVFNNGLPDALIVA-SPRLMA 244 (333)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTT-------CE--EEEEECCSSHHHHHHHHHHHHHTCCCSEEEEC-CHHHHH
T ss_pred CeEEEEeCCCCCccHHHHHHHHHHHHHHCC-------CC--EEEecCCCCHHHHHHHHHHHhcCCCCcEEEEC-CHHHHH
Confidence 46888876544 234455677777777642 22 22221456788888889999987558999974 444444
Q ss_pred HHHHhcCCCC------ccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHH
Q 002352 98 FIIQLGNKSQ------VPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIK 147 (932)
Q Consensus 98 ~v~~~~~~~~------iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~ 147 (932)
.+...+.+.+ +.++.+.... +.....|-+-.+..+....+...++++.
T Consensus 245 g~~~al~~~G~~vP~disvig~D~~~--~~~~~~p~lttv~~~~~~~g~~Av~~L~ 298 (333)
T 3jvd_A 245 GVMRAFTRLNVRVPHDVVIGGYDDPE--WYSFVGAGITTFVPPHEEMGKEAVRLLV 298 (333)
T ss_dssp HHHHHHHHTTCCTTTTCEEEEESCCG--GGGGSTTSCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCceEEEEECChH--HHHhcCCCceEEecCHHHHHHHHHHHHH
Confidence 4444444433 4477765432 3333345555666677777777777763
No 306
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=38.15 E-value=20 Score=35.47 Aligned_cols=76 Identities=12% Similarity=0.077 Sum_probs=50.5
Q ss_pred EEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecccc---ccccccccccccCe
Q 002352 469 TGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRS---KFVEFTLPYTESGV 545 (932)
Q Consensus 469 ~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~---~~vdfs~p~~~~~~ 545 (932)
.|+--+|+..+.++.|.+ +++... +-..++.++.+|.+|+.+..-....+.. ....-..|+....+
T Consensus 18 ~~ll~~L~~~Fek~~gv~--V~~~~~---------gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~l 86 (236)
T 3lr1_A 18 SGLLKVLLPPFEKKNNVK--VDVIAV---------GTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDF 86 (236)
T ss_dssp HCHHHHHHHHHHHHHTCE--EEEEEE---------CHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCE
T ss_pred hHHHHHHHHHHHHHhCCe--EEEEEc---------ChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcE
Confidence 356668888888887754 444432 2467999999999999876443322211 01112468899999
Q ss_pred EEEEEccCCC
Q 002352 546 SMIVPIKDNK 555 (932)
Q Consensus 546 ~~lv~~~~~~ 555 (932)
++++|+.++.
T Consensus 87 VlV~P~~~P~ 96 (236)
T 3lr1_A 87 VIVGPKNDPA 96 (236)
T ss_dssp EEEECTTCTT
T ss_pred EEEEECCChh
Confidence 9999987653
No 307
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=37.62 E-value=95 Score=30.76 Aligned_cols=94 Identities=6% Similarity=-0.054 Sum_probs=66.9
Q ss_pred HHHHHHHHHHcCCeEEEEEEEc------------CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhc
Q 002352 139 VGAITAIIKAFGWREAVPIYVD------------NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT 206 (932)
Q Consensus 139 ~~ai~~~l~~~~w~~v~ii~~d------------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~ 206 (932)
.....+.++..|.+.|=+.... ........+.+++.+++.|+.+....... ....+++...+.....
T Consensus 24 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~-~~~~~~~~~~i~~A~~ 102 (262)
T 3p6l_A 24 LTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYV-AEKSSDWEKMFKFAKA 102 (262)
T ss_dssp HHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEEC-CSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccC-CccHHHHHHHHHHHHH
Confidence 4456777788898888775422 11223347889999999999987665432 2345668888888888
Q ss_pred CCceEEEEEeChhhHHHHHHHHHhCCc
Q 002352 207 MQTRVFILHMLPSLGSRIFEKANEIGL 233 (932)
Q Consensus 207 ~~~~viil~~~~~~~~~l~~~a~~~g~ 233 (932)
.+++.|+++...+....+...|++.|+
T Consensus 103 lGa~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 103 MDLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp TTCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred cCCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 899999888766667777777877775
No 308
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=37.53 E-value=51 Score=33.38 Aligned_cols=83 Identities=8% Similarity=0.028 Sum_probs=51.1
Q ss_pred HHHHcCCeEEEEEEE-cCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHH
Q 002352 145 IIKAFGWREAVPIYV-DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSR 223 (932)
Q Consensus 145 ~l~~~~w~~v~ii~~-d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~ 223 (932)
-++.-.-+.|+++.. +++|...+...+.+++++.|..+.....-. ... -...+..+.+.+.|.||+....... .
T Consensus 6 ~L~~~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~---~~~-~~~~~~~l~~~~vdgiIi~~~~~~~-~ 80 (289)
T 3k9c_A 6 KLRQASSRLLGVVFELQQPFHGDLVEQIYAAATRRGYDVMLSAVAP---SRA-EKVAVQALMRERCEAAILLGTRFDT-D 80 (289)
T ss_dssp -------CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBT---TBC-HHHHHHHHTTTTEEEEEEETCCCCH-H
T ss_pred hhhcCCCCEEEEEEecCCchHHHHHHHHHHHHHHCCCEEEEEeCCC---CHH-HHHHHHHHHhCCCCEEEEECCCCCH-H
Confidence 344434467888872 245566778888899999998876554321 122 4567778888899999988654333 4
Q ss_pred HHHHHHhCCc
Q 002352 224 IFEKANEIGL 233 (932)
Q Consensus 224 l~~~a~~~g~ 233 (932)
.++.+.+ |+
T Consensus 81 ~~~~~~~-~i 89 (289)
T 3k9c_A 81 ELGALAD-RV 89 (289)
T ss_dssp HHHHHHT-TS
T ss_pred HHHHHHc-CC
Confidence 5555555 65
No 309
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=37.35 E-value=79 Score=29.05 Aligned_cols=63 Identities=10% Similarity=0.007 Sum_probs=45.1
Q ss_pred EEEEEEEcCC-----cCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcC-CceEEEEEeC
Q 002352 153 EAVPIYVDNQ-----YGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM-QTRVFILHML 217 (932)
Q Consensus 153 ~v~ii~~d~~-----~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~-~~~viil~~~ 217 (932)
++++|...|+ .-......+...+++.|..+.....++ ++.+.+.+.+++..+. +.|+||..+.
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~--Dd~~~i~~~l~~~~~~~~~DlVittGG 71 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVP--DEPPMIKKVLRLWADREGLDLILTNGG 71 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEEC--SCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcC--CCHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 5777775443 123446788899999999988776665 4556788888887654 7899988754
No 310
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=36.81 E-value=1.4e+02 Score=27.32 Aligned_cols=92 Identities=11% Similarity=-0.027 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecC--C----CCChhHHHHHHHHHhcCCceEEE
Q 002352 140 GAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVIS--P----LATDDQIEKELYKLFTMQTRVFI 213 (932)
Q Consensus 140 ~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~--~----~~~~~~~~~~l~~l~~~~~~vii 213 (932)
..+.+.+...+--..+..|. +..+......+.++|...|+++....... . ...|..+.-.+-.+. ...|.++
T Consensus 36 ~~l~~~~~~~g~l~~~~~Y~-~~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a-~~~d~~v 113 (165)
T 2qip_A 36 NQFWYVATQEKEVVSAKAYA-IASNDPKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIA-PDVDRVI 113 (165)
T ss_dssp HHHHHHHTTTEEEEEEEEEE-CCCCCHHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHG-GGCSEEE
T ss_pred HHHHHHHhcCCEEEEEEEEE-ccCCchhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhh-ccCCEEE
Confidence 34555555554333344453 22233456778899999999876432211 1 122322322222232 5688999
Q ss_pred EEeChhhHHHHHHHHHhC-Cc
Q 002352 214 LHMLPSLGSRIFEKANEI-GL 233 (932)
Q Consensus 214 l~~~~~~~~~l~~~a~~~-g~ 233 (932)
+.+...+...+++.+++. |.
T Consensus 114 LvSgD~DF~plv~~lr~~~G~ 134 (165)
T 2qip_A 114 LVSGDGDFSLLVERIQQRYNK 134 (165)
T ss_dssp EECCCGGGHHHHHHHHHHHCC
T ss_pred EEECChhHHHHHHHHHHHcCc
Confidence 998888999999999995 84
No 311
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=36.77 E-value=59 Score=32.74 Aligned_cols=79 Identities=6% Similarity=0.034 Sum_probs=53.1
Q ss_pred eEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeCh-hhHHHHHHHH
Q 002352 152 REAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-SLGSRIFEKA 228 (932)
Q Consensus 152 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~l~~~a 228 (932)
++|+++..+ ++|.......+.+++++.|..+..... ..+...-...++.+...+.|.||+.... ......++.+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~ 79 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS---QNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRA 79 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 468888763 566677788889999999988764321 2233344556777777899999886543 3334566777
Q ss_pred HhCCc
Q 002352 229 NEIGL 233 (932)
Q Consensus 229 ~~~g~ 233 (932)
.+.|+
T Consensus 80 ~~~~i 84 (290)
T 2fn9_A 80 KEAGI 84 (290)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77665
No 312
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=36.76 E-value=1e+02 Score=31.03 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=28.2
Q ss_pred HHHhcCCeEEEEccCChhHHHHHHHhcCCCCccEEec
Q 002352 77 DLLNNVLVQAILGPEKSMQTNFIIQLGNKSQVPILSF 113 (932)
Q Consensus 77 ~li~~~~v~aiiGp~~s~~a~~v~~~~~~~~iP~Is~ 113 (932)
+.+.+.++.+|+=+..+..+.++..+-+..++|+|..
T Consensus 80 ~~L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvigi 116 (274)
T 3uhf_A 80 DFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGV 116 (274)
T ss_dssp HHHTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEECS
T ss_pred HHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEcC
Confidence 4555679999999777766666677777789999963
No 313
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=36.54 E-value=33 Score=34.66 Aligned_cols=66 Identities=11% Similarity=0.063 Sum_probs=41.3
Q ss_pred EEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeeccccccccccccccccCeEEEE
Q 002352 470 GYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIV 549 (932)
Q Consensus 470 G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv 549 (932)
.+-..++..+.++.+ .+.+++...+ . +.++.+|++|+++...... ...+. +.++....+++++
T Consensus 101 ~~l~~~l~~f~~~~P-~v~i~~~~~~--------~----~~~l~~~~~Dl~i~~~~~~---~~~l~-~~~l~~~~~~~v~ 163 (300)
T 3mz1_A 101 LVIIPALPEFHKKYP-DIQIDLGVSD--------R----TIDYLAENVDCAIRAGTLT---DQSLI-ARRITEMKFVACA 163 (300)
T ss_dssp HTHHHHHHHHHHHCT-TEEEEEEECC--------C----C--CCCTTCCEEEEESSCS---CTTSE-EEEEEEECEEEEE
T ss_pred HHHHHHHHHHHHHCC-CcEEEEEeCC--------C----cccccccCCcEEEEeccCC---CCCeE-EEEeecceeEEEE
Confidence 455678889988877 3566654421 1 1257889999998653322 22232 3677778888888
Q ss_pred Ecc
Q 002352 550 PIK 552 (932)
Q Consensus 550 ~~~ 552 (932)
+..
T Consensus 164 ~~~ 166 (300)
T 3mz1_A 164 SRD 166 (300)
T ss_dssp EHH
T ss_pred CHH
Confidence 754
No 314
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=36.50 E-value=69 Score=33.52 Aligned_cols=86 Identities=7% Similarity=-0.019 Sum_probs=49.5
Q ss_pred HHHcCCeEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHH
Q 002352 146 IKAFGWREAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSR 223 (932)
Q Consensus 146 l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~ 223 (932)
++.-.-+.|+++..+ ++|...+...+.+.+++.|..+..... .....+.....+..+...+.|.||+.........
T Consensus 56 l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~~~l~~l~~~~vdGiIi~~~~~~~~~ 133 (349)
T 1jye_A 56 LAGKQSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMV--ERSGVEACKTAVHNLLAQRVSGLIINYPLDDQDA 133 (349)
T ss_dssp ------CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC--CSSSHHHHHHHHHHHHTTTCSCEEEESCCCHHHH
T ss_pred hhcCCCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeC--CCCcHHHHHHHHHHHHHCCCCEEEEecCCCChhH
Confidence 333334678888864 455566778888899999988765322 1112233445677777889999988743222222
Q ss_pred HHHHHHhCCc
Q 002352 224 IFEKANEIGL 233 (932)
Q Consensus 224 l~~~a~~~g~ 233 (932)
+...+.+.|+
T Consensus 134 ~~~~~~~~~i 143 (349)
T 1jye_A 134 IAVEAACTNV 143 (349)
T ss_dssp HHHHHHTTTS
T ss_pred HHHHHhhCCC
Confidence 3344445554
No 315
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=36.44 E-value=66 Score=33.94 Aligned_cols=96 Identities=10% Similarity=0.024 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhh
Q 002352 141 AITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSL 220 (932)
Q Consensus 141 ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~ 220 (932)
.+.++++.+|.+++.+|+..... +..+.+.+.|++.++.+ +. .+.++.+.+.+.+.+..+++.++|+||-.+.+..
T Consensus 24 ~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~v-~~-~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~ 99 (353)
T 3hl0_A 24 DVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLAAGV-FS-EAAMHTPVEVTKTAVEAYRAAGADCVVSLGGGST 99 (353)
T ss_dssp GHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGEEEE-EC-CCCTTCBHHHHHHHHHHHHHTTCSEEEEEESHHH
T ss_pred HHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCCcEE-ec-CcCCCCcHHHHHHHHHHHhccCCCEEEEeCCcHH
Confidence 36778888999999999865543 35677888888765443 22 2334456667888888888899999888776653
Q ss_pred --HHHHHHHHHhCCccccceEEEEecc
Q 002352 221 --GSRIFEKANEIGLMNKGCVWIMTEG 245 (932)
Q Consensus 221 --~~~l~~~a~~~g~~~~~~~wi~t~~ 245 (932)
+..++.. ..+ ..++-|-|..
T Consensus 100 iD~aK~iA~--~~~---~p~i~IPTTa 121 (353)
T 3hl0_A 100 TGLGKAIAL--RTD---AAQIVIPTTY 121 (353)
T ss_dssp HHHHHHHHH--HHC---CEEEEEECSS
T ss_pred HHHHHHHHh--ccC---CCEEEEeCCc
Confidence 3444332 223 3345555554
No 316
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=36.25 E-value=65 Score=29.67 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=44.9
Q ss_pred eEEEEEEEcCCc-----CCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEe
Q 002352 152 REAVPIYVDNQY-----GEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHM 216 (932)
Q Consensus 152 ~~v~ii~~d~~~-----g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 216 (932)
-+|++|...|+- -......+...+++.|.++.....++ ++ +.+.+.+.+..+.++|+||..+
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~--Dd-~~i~~al~~a~~~~~DlVittG 74 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVA--DG-SPVGEALRKAIDDDVDVILTSG 74 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEEC--SS-HHHHHHHHHHHHTTCSEEEEES
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeC--CH-HHHHHHHHHHHhCCCCEEEECC
Confidence 467888765432 23456788889999999988776664 44 6788888877656789999875
No 317
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=36.20 E-value=36 Score=35.13 Aligned_cols=80 Identities=10% Similarity=0.017 Sum_probs=53.7
Q ss_pred eEEEEEEE--cCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeCh-hhHHHHHHHH
Q 002352 152 REAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-SLGSRIFEKA 228 (932)
Q Consensus 152 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~l~~~a 228 (932)
++|+++.. +++|.......+.+++++.|.++.... +...+...-...++.+.+.+.|.||+.... ......++.+
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a 81 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDG--PTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRA 81 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECC--CSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 57888875 355666777888888888897765421 112233344566777778899998886543 3335677888
Q ss_pred HhCCc
Q 002352 229 NEIGL 233 (932)
Q Consensus 229 ~~~g~ 233 (932)
.+.|+
T Consensus 82 ~~~gi 86 (316)
T 1tjy_A 82 MQRGV 86 (316)
T ss_dssp HHTTC
T ss_pred HHCcC
Confidence 88775
No 318
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=36.12 E-value=74 Score=32.30 Aligned_cols=79 Identities=6% Similarity=0.127 Sum_probs=53.1
Q ss_pred eEEEEEEEc--CCcCCChHHHHHHHHHhCCc-eeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChh-hHHHHHHH
Q 002352 152 REAVPIYVD--NQYGEEMIPSLTDALQAIDT-RVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS-LGSRIFEK 227 (932)
Q Consensus 152 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~-~~~~l~~~ 227 (932)
+.|+++..+ ++|.......+.+++++.|. .+..... ..+.......++.+...+.|.||+..... .....+++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~ 79 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS---QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK 79 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHH
Confidence 467888753 55666778888899999996 7654321 22333445667777788999998865433 34567777
Q ss_pred HHhCCc
Q 002352 228 ANEIGL 233 (932)
Q Consensus 228 a~~~g~ 233 (932)
+.+.|+
T Consensus 80 ~~~~~i 85 (309)
T 2fvy_A 80 ARGQNV 85 (309)
T ss_dssp HHTTTC
T ss_pred HHHCCC
Confidence 877775
No 319
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=35.90 E-value=85 Score=31.05 Aligned_cols=94 Identities=10% Similarity=0.025 Sum_probs=65.8
Q ss_pred HHHHHHHHHHcCCeEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEe
Q 002352 139 VGAITAIIKAFGWREAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHM 216 (932)
Q Consensus 139 ~~ai~~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 216 (932)
.....+.++..|.+.|=+.... ........+.+++.+++.|+.+....... ....+.+...+...+..+++.|+++.
T Consensus 32 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~-~~~~~~~~~~i~~A~~lGa~~v~~~p 110 (257)
T 3lmz_A 32 LDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIY-MKSEEEIDRAFDYAKRVGVKLIVGVP 110 (257)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEE-ECSHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEeccc-cCCHHHHHHHHHHHHHhCCCEEEecC
Confidence 4556777888898888775431 11223446789999999999887554321 13456677777777788888888877
Q ss_pred ChhhHHHHHHHHHhCCc
Q 002352 217 LPSLGSRIFEKANEIGL 233 (932)
Q Consensus 217 ~~~~~~~l~~~a~~~g~ 233 (932)
..+....+...|++.|+
T Consensus 111 ~~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 111 NYELLPYVDKKVKEYDF 127 (257)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 66677788888888776
No 320
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=35.42 E-value=1.7e+02 Score=24.72 Aligned_cols=58 Identities=14% Similarity=0.078 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeC--hhhHHHHHHHHHhCC
Q 002352 166 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML--PSLGSRIFEKANEIG 232 (932)
Q Consensus 166 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~l~~~a~~~g 232 (932)
.....+...+.+.|..+... .+ ....+..+.+..+++|++... ...+..++++.++..
T Consensus 17 ~~~~~l~~~L~~~g~~v~~~------~~---~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 76 (132)
T 3lte_A 17 AMAAAIERVLKRDHWQVEIA------HN---GFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNK 76 (132)
T ss_dssp HHHHHHHHHHHHTTCEEEEE------SS---HHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCCcEEEEe------CC---HHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 44677778888888766422 12 234455566688999999854 345788888888765
No 321
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=35.30 E-value=2e+02 Score=28.82 Aligned_cols=78 Identities=10% Similarity=-0.028 Sum_probs=50.7
Q ss_pred CeEEEEEEE------cCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHH
Q 002352 151 WREAVPIYV------DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRI 224 (932)
Q Consensus 151 w~~v~ii~~------d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l 224 (932)
-+.|+++.. +++|...+...+.+++++.|..+.....-. .......++.+...+.|.||+....... ..
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~ 80 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP----GEKYQSLIHLVETRRVDALIVAHTQPED-FR 80 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT----TCCCHHHHHHHHHTCCSEEEECSCCSSC-HH
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC----hhhHHHHHHHHHcCCCCEEEEeCCCCCh-HH
Confidence 357888886 345566678888888999998876554321 2223345566667889988887543322 45
Q ss_pred HHHHHhCCc
Q 002352 225 FEKANEIGL 233 (932)
Q Consensus 225 ~~~a~~~g~ 233 (932)
++.+.+.|+
T Consensus 81 ~~~l~~~~i 89 (294)
T 3qk7_A 81 LQYLQKQNF 89 (294)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhCCC
Confidence 666777665
No 322
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=35.26 E-value=51 Score=33.24 Aligned_cols=80 Identities=11% Similarity=0.035 Sum_probs=54.0
Q ss_pred CCeEEEEEEEc-------CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHH
Q 002352 150 GWREAVPIYVD-------NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGS 222 (932)
Q Consensus 150 ~w~~v~ii~~d-------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~ 222 (932)
.-+.|+++..+ ++|...+...+.+++++.|..+... ......+.....++.+...+.|.||+...... .
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~-~ 82 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMS---TGETEEEIFNGVVKMVQGRQIGGIILLYSREN-D 82 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEEC---CCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT-C
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEE---eCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-h
Confidence 34678888765 4566777888889999999877642 11222334456677788889999988654322 2
Q ss_pred HHHHHHHhCCc
Q 002352 223 RIFEKANEIGL 233 (932)
Q Consensus 223 ~l~~~a~~~g~ 233 (932)
..++.+.+.|+
T Consensus 83 ~~~~~l~~~~i 93 (292)
T 3k4h_A 83 RIIQYLHEQNF 93 (292)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 56777777776
No 323
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=34.75 E-value=37 Score=34.48 Aligned_cols=88 Identities=11% Similarity=0.009 Sum_probs=53.4
Q ss_pred HHHHHHcCCeEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhh
Q 002352 143 TAIIKAFGWREAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSL 220 (932)
Q Consensus 143 ~~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~ 220 (932)
++-++.-.-+.|+++..+ ++|.......+.+++++.|..+..... ..+.......++.+...+.|.||+......
T Consensus 12 Ar~L~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~~~~ 88 (293)
T 2iks_A 12 AAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS---EDQPDNEMRCIEHLLQRQVDAIIVSTSLPP 88 (293)
T ss_dssp ------CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSCT
T ss_pred HHHhhcCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 333444444688888863 556667788888899999988764321 223334456677777889999988754332
Q ss_pred HHHHHHHHHhCCc
Q 002352 221 GSRIFEKANEIGL 233 (932)
Q Consensus 221 ~~~l~~~a~~~g~ 233 (932)
...+++.+.+.|+
T Consensus 89 ~~~~~~~~~~~~i 101 (293)
T 2iks_A 89 EHPFYQRWANDPF 101 (293)
T ss_dssp TCHHHHTTTTSSS
T ss_pred cHHHHHHHHhCCC
Confidence 2335556666564
No 324
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=34.54 E-value=62 Score=34.23 Aligned_cols=96 Identities=16% Similarity=0.066 Sum_probs=62.0
Q ss_pred HHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhh
Q 002352 141 AITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSL 220 (932)
Q Consensus 141 ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~ 220 (932)
.+.++++.+|.+++.+|+..... +..+.+.+.|.+.++.+ +. .+.++++.+.+.+.+..+++.++|+||-.+.+..
T Consensus 26 ~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~~-f~-~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 101 (358)
T 3jzd_A 26 QVAAEVERLGAKRALVLCTPNQQ--AEAERIADLLGPLSAGV-YA-GAVMHVPIESARDATARAREAGADCAVAVGGGST 101 (358)
T ss_dssp GHHHHHHHTTCSCEEEECCGGGH--HHHHHHHHHHGGGEEEE-EC-CCCTTCBHHHHHHHHHHHHHHTCSEEEEEESHHH
T ss_pred HHHHHHHHhCCCeEEEEeCCcHH--HHHHHHHHHhccCCEEE-ec-CCcCCCCHHHHHHHHHHhhccCCCEEEEeCCcHH
Confidence 46778888999999999865543 34677788887765433 22 2333455667777888888889999888877653
Q ss_pred --HHHHHHHHHhCCccccceEEEEecc
Q 002352 221 --GSRIFEKANEIGLMNKGCVWIMTEG 245 (932)
Q Consensus 221 --~~~l~~~a~~~g~~~~~~~wi~t~~ 245 (932)
+..++.. ..+ ..++-|-|..
T Consensus 102 iD~aK~iA~--~~~---~p~i~IPTT~ 123 (358)
T 3jzd_A 102 TGLGKAIAL--ETG---MPIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHH--HHC---CCEEEEECSS
T ss_pred HHHHHHHHh--ccC---CCEEEEeCCc
Confidence 3444433 223 3355565554
No 325
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=34.47 E-value=1.7e+02 Score=25.84 Aligned_cols=58 Identities=10% Similarity=-0.005 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeC--hhhHHHHHHHHHhCC
Q 002352 166 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML--PSLGSRIFEKANEIG 232 (932)
Q Consensus 166 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~l~~~a~~~g 232 (932)
.....+.+.+++.|..+... .+ ....+..+.+..+|+||+... ..++..+++..++..
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~------~~---~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 18 TQAEHLKHILEETGYQTEHV------RN---GREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQP 77 (154)
T ss_dssp HHHHHHHHHHHTTTCEEEEE------SS---HHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHCCCEEEEe------CC---HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 45677888888888765321 12 345566677788999999864 446778888888754
No 326
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=34.42 E-value=50 Score=34.61 Aligned_cols=78 Identities=12% Similarity=0.043 Sum_probs=51.0
Q ss_pred eEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHH
Q 002352 152 REAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKAN 229 (932)
Q Consensus 152 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~ 229 (932)
+.|+++..+ ++|...+...+.+++++.|..+..... ..+.......++.+...+.|.||+...... ...++.+.
T Consensus 67 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l~ 142 (348)
T 3bil_A 67 NTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNS---NEDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLEDLQ 142 (348)
T ss_dssp -CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEEC---TTCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHH
Confidence 468888854 556667788888899999988765322 223334456677777889999888765433 24566666
Q ss_pred hCCc
Q 002352 230 EIGL 233 (932)
Q Consensus 230 ~~g~ 233 (932)
+.|+
T Consensus 143 ~~~i 146 (348)
T 3bil_A 143 KQGM 146 (348)
T ss_dssp HC-C
T ss_pred hCCC
Confidence 6665
No 327
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=34.35 E-value=71 Score=33.15 Aligned_cols=82 Identities=13% Similarity=0.136 Sum_probs=51.4
Q ss_pred eEEEEEEEc---CCcCCChHHHHHHHHHhCCceeeeeeecCC-CCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHH
Q 002352 152 REAVPIYVD---NQYGEEMIPSLTDALQAIDTRVPYRSVISP-LATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEK 227 (932)
Q Consensus 152 ~~v~ii~~d---~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~-~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~ 227 (932)
+.|+++..+ ++|.......+.+++++.|..+........ ..+...-...++.+...+.|.||+..........++.
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 123 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEH 123 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHHHH
Confidence 468888764 466667788888899999976654321111 0233334466777777889999984333333455666
Q ss_pred HHhCCc
Q 002352 228 ANEIGL 233 (932)
Q Consensus 228 a~~~g~ 233 (932)
+.+.|.
T Consensus 124 ~~~~~i 129 (342)
T 1jx6_A 124 VLDSTN 129 (342)
T ss_dssp HHHHCS
T ss_pred HHHcCC
Confidence 666664
No 328
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=34.27 E-value=3.8e+02 Score=27.06 Aligned_cols=85 Identities=11% Similarity=-0.073 Sum_probs=47.1
Q ss_pred cccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCCcceEEecccccccceEEEecCCCCChHHHHHHHHhhhc
Q 002352 697 KLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYCSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTE 776 (932)
Q Consensus 697 ~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~s~l~~~in~~il~l~e 776 (932)
++..+.+..+..+.+.+|+ ++..+.-............ .+.++.+.-.....+++++|+++-.+.-.+.|..|.+
T Consensus 175 ~~~~~~~~~~~~~~~~~G~----~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~i~k~s~~~e~A~~fi~fl~s 249 (320)
T 4euo_A 175 DIIWWSGGAQSQQLIASAE----APFGSVWNGRMTALEQSGV-KVETSWAQNITAADSLVVPKGTKNKDAAMKFIALATS 249 (320)
T ss_dssp GEEEECSHHHHHHHHHTTS----SCEEEEEHHHHHHHHHTTC-CCEEEEEEEEEEEEEEECBTTCSCHHHHHHHHHHHTS
T ss_pred ceeEeCCCchHHHHHHcCC----EEEEEeecHHHHHHHhCCC-CeEEEecCceeecceEEEECCCCCHHHHHHHHHHHhC
Confidence 3455667778889999998 6665543222222222221 1333222212233478899999987777777776665
Q ss_pred cchHHHHHHHh
Q 002352 777 GNKMKEIEDEW 787 (932)
Q Consensus 777 ~G~~~~~~~~~ 787 (932)
. ..+....+.
T Consensus 250 ~-e~q~~~~~~ 259 (320)
T 4euo_A 250 A-QAQADMATA 259 (320)
T ss_dssp H-HHHHHHHHH
T ss_pred H-HHHHHHHHh
Confidence 4 334444433
No 329
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=34.13 E-value=2.7e+02 Score=25.27 Aligned_cols=86 Identities=16% Similarity=0.097 Sum_probs=55.8
Q ss_pred eEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeCh----hhHHHHHHH
Q 002352 152 REAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP----SLGSRIFEK 227 (932)
Q Consensus 152 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~----~~~~~l~~~ 227 (932)
.+|.+.....+...-....+...|+..|.+|.+--. ..+. ...+..+++.++++|.+.+.. .....++++
T Consensus 19 ~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~---~~p~---e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~ 92 (161)
T 2yxb_A 19 YKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGL---RQTP---EQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAK 92 (161)
T ss_dssp CEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCS---BCCH---HHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCC---CCCH---HHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHH
Confidence 466666655555455567777888999999876422 1233 345556667899999998753 346778888
Q ss_pred HHhCCccccceEEEEec
Q 002352 228 ANEIGLMNKGCVWIMTE 244 (932)
Q Consensus 228 a~~~g~~~~~~~wi~t~ 244 (932)
+++.|.. .-.+|++..
T Consensus 93 L~~~g~~-~i~v~vGG~ 108 (161)
T 2yxb_A 93 LRELGAD-DIPVVLGGT 108 (161)
T ss_dssp HHHTTCT-TSCEEEEEC
T ss_pred HHhcCCC-CCEEEEeCC
Confidence 8887762 234566553
No 330
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=33.95 E-value=37 Score=34.71 Aligned_cols=87 Identities=11% Similarity=0.016 Sum_probs=54.1
Q ss_pred HHHHHHcCCeEEEEEEEc-------CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEE
Q 002352 143 TAIIKAFGWREAVPIYVD-------NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILH 215 (932)
Q Consensus 143 ~~~l~~~~w~~v~ii~~d-------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~ 215 (932)
++-++.-.-+.|+++..+ +.|...+...+.+++++.|..+.... ...........++.+...+.|.||+.
T Consensus 14 Ar~L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiIi~ 90 (305)
T 3huu_A 14 ARTLITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTV---SENSGDLYHEVKTMIQSKSVDGFILL 90 (305)
T ss_dssp -------CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECC---CSSHHHHHHHHHHHHHTTCCSEEEES
T ss_pred HHHhhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEe---CCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 344444455789988765 45666778888889999998876431 12222334566777888999999886
Q ss_pred eChhhHHHHHHHHHhCCc
Q 002352 216 MLPSLGSRIFEKANEIGL 233 (932)
Q Consensus 216 ~~~~~~~~l~~~a~~~g~ 233 (932)
..... ...++.+.+.|+
T Consensus 91 ~~~~~-~~~~~~l~~~~i 107 (305)
T 3huu_A 91 YSLKD-DPIEHLLNEFKV 107 (305)
T ss_dssp SCBTT-CHHHHHHHHTTC
T ss_pred CCcCC-cHHHHHHHHcCC
Confidence 54332 256677777775
No 331
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=33.92 E-value=30 Score=34.20 Aligned_cols=76 Identities=11% Similarity=0.091 Sum_probs=49.3
Q ss_pred EEEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecccc---ccccccccccccCe
Q 002352 469 TGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRS---KFVEFTLPYTESGV 545 (932)
Q Consensus 469 ~G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~---~~vdfs~p~~~~~~ 545 (932)
.|+--+|+..+.++.|.+ +++... +-..++.++.+|.+|+.+..-....+.. ....-..|+....+
T Consensus 18 ~~ll~~L~~~Fek~~gv~--V~~~~~---------gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~l 86 (237)
T 3muq_A 18 SGLLDYLLPQFEKDTGYK--VDVIAA---------GTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDF 86 (237)
T ss_dssp HTHHHHHHHHHHHHHCCE--EEEEEE---------CHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHhCce--EEEEEc---------ChHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCE
Confidence 355567888888887754 444332 2457899999999999876443222211 01112468888899
Q ss_pred EEEEEccCCC
Q 002352 546 SMIVPIKDNK 555 (932)
Q Consensus 546 ~~lv~~~~~~ 555 (932)
++++|+.++.
T Consensus 87 VlV~P~~~P~ 96 (237)
T 3muq_A 87 VIVGPKADPA 96 (237)
T ss_dssp EEEECTTCTT
T ss_pred EEEEeCCChh
Confidence 9999977543
No 332
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=33.91 E-value=2.3e+02 Score=29.24 Aligned_cols=131 Identities=9% Similarity=0.117 Sum_probs=71.1
Q ss_pred EEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEE--ccCChhHHH
Q 002352 20 NVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVLVQAIL--GPEKSMQTN 97 (932)
Q Consensus 20 ~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~v~aii--Gp~~s~~a~ 97 (932)
.|+.+|..++ .+-+.+++.|+.++.. ..+.+...+++-.-.+.+.-..+.++.- +++|+ .+. ..
T Consensus 50 ~la~lF~e~S---TRTR~SFE~A~~~LGg------~~i~l~~~~ss~~kgEsl~DTarvLs~~-~D~iviR~~~-~~--- 115 (323)
T 3gd5_A 50 VLGLVFLKAS---TRTRVSFTVAMYQLGG------QVIDLSPSNTQVGRGEPVRDTARVLGRY-VDGLAIRTFA-QT--- 115 (323)
T ss_dssp EEEEEESSCC---HHHHHHHHHHHHHTTC------EEEEC----------CCHHHHHHHHTTT-CSEEEEECSS-HH---
T ss_pred EEEEEecCCC---cchHhhHHHHHHHcCC------eEEEeCcccccCCCCCCHHHHHHHHHHh-CCEEEEecCC-hh---
Confidence 5777876665 3457889999887732 2333333333222223333344445442 44544 433 22
Q ss_pred HHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHH---HHcC---CeEEEEEEEcCCcCCChHHHH
Q 002352 98 FIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAII---KAFG---WREAVPIYVDNQYGEEMIPSL 171 (932)
Q Consensus 98 ~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~~~---w~~v~ii~~d~~~g~~~~~~l 171 (932)
.+..+++..++|+|.-+. +..+| .+++++++ .++| ..+|+++- |. ......+
T Consensus 116 ~~~~lA~~~~vPVINag~------~~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vG--D~--~rva~Sl 173 (323)
T 3gd5_A 116 ELEEYAHYAGIPVINALT------DHEHP------------CQVVADLLTIRENFGRLAGLKLAYVG--DG--NNVAHSL 173 (323)
T ss_dssp HHHHHHHHHCSCEEEEEC------SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES--CC--CHHHHHH
T ss_pred HHHHHHHhCCCCEEeCCC------CCCCc------------HHHHHHHHHHHHHhCCCCCCEEEEEC--CC--CcHHHHH
Confidence 333444556799998432 12233 66777775 4444 45666654 22 4667888
Q ss_pred HHHHHhCCceeeeee
Q 002352 172 TDALQAIDTRVPYRS 186 (932)
Q Consensus 172 ~~~l~~~g~~v~~~~ 186 (932)
..++...|.++....
T Consensus 174 ~~~~~~~G~~v~~~~ 188 (323)
T 3gd5_A 174 LLGCAKVGMSIAVAT 188 (323)
T ss_dssp HHHHHHHTCEEEEEC
T ss_pred HHHHHHcCCEEEEEC
Confidence 888888898876653
No 333
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=33.50 E-value=2.3e+02 Score=29.02 Aligned_cols=130 Identities=8% Similarity=0.156 Sum_probs=72.2
Q ss_pred EEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecC---CCCHHHHHHHHHHHHhcCCeEEEEccCChhHH
Q 002352 20 NVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNS---KGDVVAAAAAALDLLNNVLVQAILGPEKSMQT 96 (932)
Q Consensus 20 ~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~---~~~~~~a~~~a~~li~~~~v~aiiGp~~s~~a 96 (932)
.|+.+|..++ .+-+.+++.|+.++-. ..+.+...++ ++.+..-......-+. .+.++=.+. ..
T Consensus 38 ~la~lF~e~S---TRTR~SFe~A~~~LGg------~~i~l~~~~ss~~kgEsl~DTarvls~~~--D~iviR~~~-~~-- 103 (307)
T 3tpf_A 38 TLAMIFEKNS---TRTRMAFELAITELGG------KALFLSSNDLQLSRGEPVKDTARVIGAMV--DFVMMRVNK-HE-- 103 (307)
T ss_dssp EEEEEESSCC---HHHHHHHHHHHHHTTC------EEEEECTTTCCTTTSSCHHHHHHHHHHHS--SEEEEECSC-HH--
T ss_pred EEEEEecCCC---cchHHhHHHHHHHcCC------eEEEcCcccccCCCCCCHHHHHHHHHHhC--CEEEEecCC-hH--
Confidence 4777876665 3457889999887632 2333333332 2322222222222222 344444443 23
Q ss_pred HHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHH---HHcC-Ce---EEEEEEEcCCcCCChHH
Q 002352 97 NFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAII---KAFG-WR---EAVPIYVDNQYGEEMIP 169 (932)
Q Consensus 97 ~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~~~-w~---~v~ii~~d~~~g~~~~~ 169 (932)
.+..+++..++|+|.-+. +..+| .+++++++ .++| ++ +|+++- | +.....
T Consensus 104 -~~~~lA~~~~vPVINag~------~~~HP------------tQaLaDl~Ti~e~~g~l~~gl~va~vG--D--~~~va~ 160 (307)
T 3tpf_A 104 -TLLEFARYSKAPVINALS------ELYHP------------TQVLGDLFTIKEWNKMQNGIAKVAFIG--D--SNNMCN 160 (307)
T ss_dssp -HHHHHHHHCSSCEEEEEC------SSCCH------------HHHHHHHHHHHHTTCCGGGCCEEEEES--C--SSHHHH
T ss_pred -HHHHHHHhCCCCEEeCCC------CCcCc------------HHHHHHHHHHHHHhCCCCCCCEEEEEc--C--CCccHH
Confidence 334455566799998432 12233 67778775 4454 34 555553 3 356788
Q ss_pred HHHHHHHhCCceeeeee
Q 002352 170 SLTDALQAIDTRVPYRS 186 (932)
Q Consensus 170 ~l~~~l~~~g~~v~~~~ 186 (932)
.+..++...|.++....
T Consensus 161 Sl~~~~~~~G~~v~~~~ 177 (307)
T 3tpf_A 161 SWLITAAILGFEISIAM 177 (307)
T ss_dssp HHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHcCCEEEEEC
Confidence 89999999998876653
No 334
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=33.27 E-value=1.5e+02 Score=24.79 Aligned_cols=58 Identities=16% Similarity=0.066 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEe--ChhhHHHHHHHHHhCC
Q 002352 166 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHM--LPSLGSRIFEKANEIG 232 (932)
Q Consensus 166 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~--~~~~~~~l~~~a~~~g 232 (932)
.....+...+++.|..+... .+ ....+..+.+..+|++++.. ...++..++++.++..
T Consensus 13 ~~~~~l~~~l~~~g~~v~~~------~~---~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~ 72 (122)
T 3gl9_A 13 VLRKIVSFNLKKEGYEVIEA------EN---GQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKE 72 (122)
T ss_dssp HHHHHHHHHHHHTTCEEEEE------SS---HHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHCCcEEEEe------CC---HHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcc
Confidence 34567777888888766421 12 33456666778899999874 3446778888887654
No 335
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=32.96 E-value=2.2e+02 Score=29.67 Aligned_cols=132 Identities=11% Similarity=0.111 Sum_probs=70.0
Q ss_pred EEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhc-CCeEEEEccCChhHHHH
Q 002352 20 NVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNN-VLVQAILGPEKSMQTNF 98 (932)
Q Consensus 20 ~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~~v~aiiGp~~s~~a~~ 98 (932)
.|+.+|..++ .+-+.+++.|+.++-. ..+.+...+++-.-.+.+.-..+.++. -.+.++=++. . ..
T Consensus 72 ~la~lF~epS---TRTR~SFE~A~~~LGg------~vi~l~~~~ss~~kgEsl~DTarvLs~y~D~IviR~~~-~---~~ 138 (340)
T 4ep1_A 72 ILGLIFDKHS---TRTRVSFEAGMVQLGG------HGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIRTFS-H---AD 138 (340)
T ss_dssp EEEEEESSCC---HHHHHHHHHHHHHTTC------EEEEEESCC------CCTTHHHHHHHHHCSEEEEECSC-H---HH
T ss_pred eEEEEecCCC---ccHHHHHHHHHHHcCC------eEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCC-h---hH
Confidence 4777776655 3457789999887632 233333323221111111112222222 1344444443 2 33
Q ss_pred HHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHH---HHcC---CeEEEEEEEcCCcCCChHHHHH
Q 002352 99 IIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAII---KAFG---WREAVPIYVDNQYGEEMIPSLT 172 (932)
Q Consensus 99 v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~~~---w~~v~ii~~d~~~g~~~~~~l~ 172 (932)
+..+++..++|+|.-+. +..+| .+++++++ .++| ..+|+++- |. ...+..+.
T Consensus 139 ~~~lA~~~~vPVINag~------~~~HP------------tQaLaDl~TI~E~~G~l~glkva~vG--D~--~nva~Sl~ 196 (340)
T 4ep1_A 139 VEELAKESSIPVINGLT------DDHHP------------CQALADLMTIYEETNTFKGIKLAYVG--DG--NNVCHSLL 196 (340)
T ss_dssp HHHHHHHCSSCEEEEEC------SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES--CC--CHHHHHHH
T ss_pred HHHHHHhCCCCEEeCCC------CCCCc------------HHHHHHHHHHHHHhCCCCCCEEEEEC--CC--chhHHHHH
Confidence 44455566799998432 12233 66777775 4454 45676663 22 45788888
Q ss_pred HHHHhCCceeeeee
Q 002352 173 DALQAIDTRVPYRS 186 (932)
Q Consensus 173 ~~l~~~g~~v~~~~ 186 (932)
.++...|.++....
T Consensus 197 ~~~~~~G~~v~~~~ 210 (340)
T 4ep1_A 197 LASAKVGMHMTVAT 210 (340)
T ss_dssp HHHHHHTCEEEEEC
T ss_pred HHHHHcCCEEEEEC
Confidence 89998898876653
No 336
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=32.93 E-value=66 Score=33.30 Aligned_cols=84 Identities=10% Similarity=-0.024 Sum_probs=52.2
Q ss_pred HHHcCCeEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHH
Q 002352 146 IKAFGWREAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSR 223 (932)
Q Consensus 146 l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~ 223 (932)
++.-.-+.|+++..+ ++|...+...+.+++++.|..+..... ..+.......++.+...+.|.||+...... ..
T Consensus 58 l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~ 133 (332)
T 2o20_A 58 LASKRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANS---DNDVEKEEKVLETFLSKQVDGIVYMGSSLD-EK 133 (332)
T ss_dssp ----CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECSSCCC-HH
T ss_pred HhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEEC---CCChHHHHHHHHHHHhCCCCEEEEeCCCCC-HH
Confidence 333344679998864 556677788888999999988765321 223334456677777889999988764222 13
Q ss_pred HHHHHHhCCc
Q 002352 224 IFEKANEIGL 233 (932)
Q Consensus 224 l~~~a~~~g~ 233 (932)
.++.+.+.|+
T Consensus 134 ~~~~l~~~~i 143 (332)
T 2o20_A 134 IRTSLKNSRT 143 (332)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHhCCC
Confidence 4555555554
No 337
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=32.92 E-value=75 Score=32.02 Aligned_cols=78 Identities=8% Similarity=-0.025 Sum_probs=52.3
Q ss_pred eEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHH
Q 002352 152 REAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKAN 229 (932)
Q Consensus 152 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~ 229 (932)
+.|+++..+ ++|.......+.+++++.|..+..... ..+.......++.+...+.|.||+...... ...++.+.
T Consensus 17 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~ 92 (289)
T 2fep_A 17 TTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNS---DQNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAEFK 92 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHHHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHHHH
Confidence 578888864 556677788888999999988764321 223334456677777889999988654322 23456666
Q ss_pred hCCc
Q 002352 230 EIGL 233 (932)
Q Consensus 230 ~~g~ 233 (932)
+.|+
T Consensus 93 ~~~i 96 (289)
T 2fep_A 93 RSPV 96 (289)
T ss_dssp HSSS
T ss_pred hcCC
Confidence 6665
No 338
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=32.87 E-value=71 Score=32.34 Aligned_cols=80 Identities=14% Similarity=0.126 Sum_probs=53.3
Q ss_pred eEEEEEEE--cCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChh-hHHHHHHHH
Q 002352 152 REAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS-LGSRIFEKA 228 (932)
Q Consensus 152 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~-~~~~l~~~a 228 (932)
++|+++.. +++|.......+.+++++.|.++.... +...+.......++.+...+.+.||+..... .....++.+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVG--PSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKA 82 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEEC--CSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 46778764 356667778888899999998775321 1122334445667777788899988865533 334567777
Q ss_pred HhCCc
Q 002352 229 NEIGL 233 (932)
Q Consensus 229 ~~~g~ 233 (932)
.+.|+
T Consensus 83 ~~~~i 87 (303)
T 3d02_A 83 RDAGI 87 (303)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77775
No 339
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=32.36 E-value=60 Score=35.60 Aligned_cols=96 Identities=15% Similarity=0.044 Sum_probs=61.3
Q ss_pred HHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChh-
Q 002352 141 AITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS- 219 (932)
Q Consensus 141 ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~- 219 (932)
.+.++++.+|.+++.+|+....+. ...+.+.+.|++.|+.+.+ ..+....+.+.+......+++ +.|+||-.+.+.
T Consensus 81 ~l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~~-~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGSv 157 (450)
T 1ta9_A 81 RSYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVTK-LVFGGEASLVELDKLRKQCPD-DTQVIIGVGGGKT 157 (450)
T ss_dssp GHHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEEE-EEECSCCCHHHHHHHHTTSCT-TCCEEEEEESHHH
T ss_pred HHHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEEE-EeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcHH
Confidence 356677777866999988654433 4678888999999988743 233334455566666666677 899998776654
Q ss_pred -hHHHHHHHHHhCCccccceEEEEec
Q 002352 220 -LGSRIFEKANEIGLMNKGCVWIMTE 244 (932)
Q Consensus 220 -~~~~l~~~a~~~g~~~~~~~wi~t~ 244 (932)
++..++. ...| ..++-|-|.
T Consensus 158 iD~AK~iA--~~~g---iP~I~IPTT 178 (450)
T 1ta9_A 158 MDSAKYIA--HSMN---LPSIICPTT 178 (450)
T ss_dssp HHHHHHHH--HHTT---CCEEEEESS
T ss_pred HHHHHHHH--HhcC---CCEEEEeCC
Confidence 3444443 2234 345555554
No 340
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=32.11 E-value=75 Score=31.71 Aligned_cols=37 Identities=14% Similarity=0.281 Sum_probs=26.5
Q ss_pred HHHHhcCCeEEEEccCChhHHHHHHHhcCCCCccEEe
Q 002352 76 LDLLNNVLVQAILGPEKSMQTNFIIQLGNKSQVPILS 112 (932)
Q Consensus 76 ~~li~~~~v~aiiGp~~s~~a~~v~~~~~~~~iP~Is 112 (932)
.+.+.+.++.+|+-+..+..+.++..+.+..++|+|.
T Consensus 55 ~~~L~~~g~d~iviaCNTa~~~~~~~lr~~~~iPvig 91 (255)
T 2jfz_A 55 LDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVG 91 (255)
T ss_dssp HHHHGGGCCSCEEECCHHHHHHTHHHHHHHCSSCEEC
T ss_pred HHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 3334456999999876666544666776778999997
No 341
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=31.82 E-value=1.2e+02 Score=28.15 Aligned_cols=63 Identities=13% Similarity=0.021 Sum_probs=42.9
Q ss_pred EEEEEEEcCCc-------C---CChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHh-cCCceEEEEEeC
Q 002352 153 EAVPIYVDNQY-------G---EEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLF-TMQTRVFILHML 217 (932)
Q Consensus 153 ~v~ii~~d~~~-------g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~-~~~~~viil~~~ 217 (932)
+|++|...|.- | ....+.+.+.|.+.|.++.....++ ++.+.+...+.... ..++|+||..+.
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~--Dd~~~i~~al~~~~a~~~~DlVittGG 90 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVP--DDKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 68888754311 1 2335678899999999998887765 44556777776654 456899988753
No 342
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=31.71 E-value=1.7e+02 Score=24.99 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=38.3
Q ss_pred ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeC--hhhHHHHHHHHHhCC
Q 002352 166 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML--PSLGSRIFEKANEIG 232 (932)
Q Consensus 166 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~l~~~a~~~g 232 (932)
.....+...+.+.|..+... .+ ....+..+....+|+|++... ..++..++++.++..
T Consensus 15 ~~~~~l~~~L~~~g~~v~~~------~~---~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~ 74 (136)
T 3t6k_A 15 TVAEMLELVLRGAGYEVRRA------AS---GEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHP 74 (136)
T ss_dssp HHHHHHHHHHHHTTCEEEEE------SS---HHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHCCCEEEEe------CC---HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCC
Confidence 35667778888888766421 12 234455566688999999754 446778888887753
No 343
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=31.48 E-value=1.1e+02 Score=31.64 Aligned_cols=78 Identities=14% Similarity=0.126 Sum_probs=54.5
Q ss_pred eEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHH
Q 002352 152 REAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKAN 229 (932)
Q Consensus 152 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~ 229 (932)
+.|+++..+ ++|.......+.+++++.|..+..... ..+.+.....+..+...+.|.||+....... ..++.+.
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~l~ 144 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVT---DYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAMLD 144 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEEC---TTCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHHHH
Confidence 468888754 566677788899999999988754322 2234445567778888999999987644332 5667777
Q ss_pred hCCc
Q 002352 230 EIGL 233 (932)
Q Consensus 230 ~~g~ 233 (932)
+.|+
T Consensus 145 ~~~i 148 (344)
T 3kjx_A 145 AAGI 148 (344)
T ss_dssp HCSS
T ss_pred hCCC
Confidence 7775
No 344
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=31.12 E-value=1.5e+02 Score=25.50 Aligned_cols=57 Identities=7% Similarity=-0.007 Sum_probs=38.4
Q ss_pred ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeC--hhhHHHHHHHHHhC
Q 002352 166 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML--PSLGSRIFEKANEI 231 (932)
Q Consensus 166 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~l~~~a~~~ 231 (932)
.....+...+.+.|..+... .+ ....+..+.+..+|+||+... ..++..++++.++.
T Consensus 17 ~~~~~l~~~l~~~g~~v~~~------~~---~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 75 (140)
T 3grc_A 17 DIARLLNLMLEKGGFDSDMV------HS---AAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRD 75 (140)
T ss_dssp HHHHHHHHHHHHTTCEEEEE------CS---HHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHCCCeEEEE------CC---HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 45677788888888775321 12 334555666788999999754 44677888888873
No 345
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=31.11 E-value=90 Score=21.55 Aligned_cols=22 Identities=5% Similarity=-0.067 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 002352 819 GTAATSALIIFLAVFVCEHRNV 840 (932)
Q Consensus 819 ~~g~~ls~~vf~~E~~~~~~~~ 840 (932)
.+|+++.+++.+.-++|.||++
T Consensus 18 vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 18 VVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhheehhh
Confidence 4444444444445455555444
No 346
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=31.09 E-value=3.3e+02 Score=26.80 Aligned_cols=119 Identities=8% Similarity=0.041 Sum_probs=65.2
Q ss_pred EEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhc-CCeEEEEccCChhHH
Q 002352 19 VNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNN-VLVQAILGPEKSMQT 96 (932)
Q Consensus 19 i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~~v~aiiGp~~s~~a 96 (932)
=+||++....+ .....-..|+.-|+++.. ..+.- ......+...+.+.+.+++.. +.+.||+.... ..+
T Consensus 132 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g-------~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d-~~a 202 (289)
T 3brs_A 132 GKIGVISFVKNSKTAMDREEGLKIGLSDDS-------NKIEA-IYYCDSNYDKAYDGTVELLTKYPDISVMVGLNQ-YSA 202 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHGGGG-------GGEEE-EEECTTCHHHHHHHHHHHHHHCTTEEEEEESSH-HHH
T ss_pred ceEEEEECCCCCccHHHHHHHHHHHHHhCC-------CcEEe-eecCCCCHHHHHHHHHHHHHhCCCceEEEECCC-cch
Confidence 46888875543 334455667777776632 11221 223345677788888888875 46999998543 344
Q ss_pred HHHHHhcCCC----CccEEecccCCCCccCCCCCce-EecccCchhHHHHHHHHH
Q 002352 97 NFIIQLGNKS----QVPILSFSATSPSLTSIRSSYF-FRGSLNDSSQVGAITAII 146 (932)
Q Consensus 97 ~~v~~~~~~~----~iP~Is~~a~~~~l~~~~~p~~-~r~~ps~~~~~~ai~~~l 146 (932)
..+...+.+. ++.++++........-...|.+ ..+..+...++...++++
T Consensus 203 ~g~~~al~~~G~~~di~vvg~d~~~~~~~~~~~~~l~ttv~~~~~~~g~~a~~~l 257 (289)
T 3brs_A 203 TGAARAIKDMSLEAKVKLVCIDSSMEQIQYLEEGIFEAMVVQKPFNIGYLGVEKA 257 (289)
T ss_dssp HHHHHHHHHTTCTTTSEEEEEESCSCC-----CCSCCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCHHHHHHHHCCceEEEEecChHHHHHHHHHHH
Confidence 4444444333 4778887654321111112334 445555666666666654
No 347
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=30.83 E-value=72 Score=32.00 Aligned_cols=79 Identities=6% Similarity=0.088 Sum_probs=51.3
Q ss_pred eEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeCh-hhHHHHHHHH
Q 002352 152 REAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-SLGSRIFEKA 228 (932)
Q Consensus 152 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~l~~~a 228 (932)
+.|+++..+ ++|.......+.+++++.|..+..... ..+...-...++.+...+.|.||+.... +.....++.+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDS---QNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEA 78 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecC---CCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHH
Confidence 367777753 556667788888888889988764321 2233333456777778889998886433 3333566777
Q ss_pred HhCCc
Q 002352 229 NEIGL 233 (932)
Q Consensus 229 ~~~g~ 233 (932)
.+.|+
T Consensus 79 ~~~~i 83 (283)
T 2ioy_A 79 NSKNI 83 (283)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77775
No 348
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=30.80 E-value=47 Score=33.97 Aligned_cols=75 Identities=11% Similarity=0.026 Sum_probs=47.6
Q ss_pred EEeHHHHHHHHHH---C--CCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecccc--ccccc-cc-cc
Q 002352 470 GYSIAVFKAVIEE---L--PYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRS--KFVEF-TL-PY 540 (932)
Q Consensus 470 G~~~dl~~~la~~---l--~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~--~~vdf-s~-p~ 540 (932)
.+-.++++.+.++ . + .+++++.. ++...++.+|.+|++|+++..-....+.. +.+.+ .. |+
T Consensus 33 ~~lp~ll~~F~~~~~~~~~P-~v~v~l~~---------~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l 102 (294)
T 3cvg_A 33 GLVKELADAFIKSKVDSGSA-PFKVAWYK---------SDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYA 102 (294)
T ss_dssp THHHHHHHHHHHHHHSCC----CEEEEEE---------CCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEE
T ss_pred HHHHHHHHHHHhhhcccCCC-CeEEEEEe---------CCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeE
Confidence 3456788888888 7 2 25565554 34689999999999999875322111110 11112 24 88
Q ss_pred cccCeEEEEEccCC
Q 002352 541 TESGVSMIVPIKDN 554 (932)
Q Consensus 541 ~~~~~~~lv~~~~~ 554 (932)
....+++++|...+
T Consensus 103 ~~d~lvlv~~~~hp 116 (294)
T 3cvg_A 103 FRDHFMLIGPPSNP 116 (294)
T ss_dssp EEEEEEEEECTTCT
T ss_pred EeccEEEEecCCCh
Confidence 88899999986644
No 349
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=30.53 E-value=44 Score=33.78 Aligned_cols=80 Identities=10% Similarity=-0.002 Sum_probs=54.9
Q ss_pred CCeEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHH
Q 002352 150 GWREAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEK 227 (932)
Q Consensus 150 ~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~ 227 (932)
.-+.|+++..+ +.|...+...+.+++++.|..+..... ..+.......++.+...+.|.||+..... ....++.
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~~ 82 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANT---AEDIVREREAVGQFFERRVDGLILAPSEG-EHDYLRT 82 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHHHH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHHHH
Confidence 34678888864 455667788899999999988765432 22344456677778888999998876543 3455666
Q ss_pred HHhCCc
Q 002352 228 ANEIGL 233 (932)
Q Consensus 228 a~~~g~ 233 (932)
+.+.|+
T Consensus 83 ~~~~~i 88 (291)
T 3egc_A 83 ELPKTF 88 (291)
T ss_dssp SSCTTS
T ss_pred hhccCC
Confidence 666665
No 350
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=29.95 E-value=1.9e+02 Score=28.98 Aligned_cols=116 Identities=15% Similarity=0.095 Sum_probs=68.5
Q ss_pred EEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcC----CeEEEEccCChh
Q 002352 20 NVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNV----LVQAILGPEKSM 94 (932)
Q Consensus 20 ~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~----~v~aiiGp~~s~ 94 (932)
+||++....+ .....-..|+.-|+++.+ .++. +.....+...+.+++.+++... .+.||+. .+..
T Consensus 133 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~g-------~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~-~~d~ 202 (295)
T 3hcw_A 133 ELIFITEKGNFEVSKDRIQGFETVASQFN-------LDYQ--IIETSNEREVILNYMQNLHTRLKDPNIKQAIIS-LDAM 202 (295)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHHHHTT-------CEEE--EEEECSCHHHHHHHHHHHHHHHTCTTSCEEEEE-SSHH
T ss_pred cEEEEcCCccchhHHHHHHHHHHHHHHcC-------CCee--EEeccCCHHHHHHHHHHHHhhcccCCCCcEEEE-CChH
Confidence 6888876544 334455677887777642 3343 2333456777778888888753 6899997 3444
Q ss_pred HHHHHHHhcCCCC--cc----EEecccCCCCccCCCCCceEecccCchhHHHHHHHHHH
Q 002352 95 QTNFIIQLGNKSQ--VP----ILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIK 147 (932)
Q Consensus 95 ~a~~v~~~~~~~~--iP----~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~ 147 (932)
.+..+...+.+.+ || +|.+.... +.....|-+-.+..+....++..++++.
T Consensus 203 ~A~g~~~al~~~g~~vP~di~vig~D~~~--~~~~~~p~lttv~~~~~~~g~~a~~~l~ 259 (295)
T 3hcw_A 203 LHLAILSVLYELNIEIPKDVMTATFNDSY--LTEIASPPQTCIDIKPRMLGQQAGSAIL 259 (295)
T ss_dssp HHHHHHHHHHHTTCCTTTTEEEEEECCSH--HHHTSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEeCChh--HHhhCCCCeeEEEECHHHHHHHHHHHHH
Confidence 4555555554443 34 66665321 2223345555666667777777777653
No 351
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=29.03 E-value=2.6e+02 Score=26.61 Aligned_cols=88 Identities=13% Similarity=-0.075 Sum_probs=56.9
Q ss_pred eEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeCh----hhHHHHHHH
Q 002352 152 REAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP----SLGSRIFEK 227 (932)
Q Consensus 152 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~----~~~~~l~~~ 227 (932)
.+|.+.....+...-....+...|+..|.+|.+--. ..+. ...+..+++.++++|.+.+.. .....+++.
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~---~vp~---~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~ 162 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGV---DIEP---GKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDA 162 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCS---SBCH---HHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHH
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCC---CCCH---HHHHHHHHHcCCCEEEEeccccccHHHHHHHHHH
Confidence 467666666565555567778888999999875322 2233 344555556789999988753 346778888
Q ss_pred HHhCCccccceEEEEecc
Q 002352 228 ANEIGLMNKGCVWIMTEG 245 (932)
Q Consensus 228 a~~~g~~~~~~~wi~t~~ 245 (932)
.++.|....-.++++...
T Consensus 163 l~~~~~~~~~~v~vGG~~ 180 (210)
T 1y80_A 163 LIAAGLRDRVKVIVGGAP 180 (210)
T ss_dssp HHHTTCGGGCEEEEESTT
T ss_pred HHhcCCCCCCeEEEECCC
Confidence 888876433445555433
No 352
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=28.87 E-value=2.4e+02 Score=27.78 Aligned_cols=115 Identities=12% Similarity=0.026 Sum_probs=64.0
Q ss_pred EEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhc--CCeEEEEccCChhHH
Q 002352 20 NVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNN--VLVQAILGPEKSMQT 96 (932)
Q Consensus 20 ~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~--~~v~aiiGp~~s~~a 96 (932)
+||++....+ .....-..|+.-|+++.+ .++. +.....+...+.+.+.+++.. +++.||+.. +...+
T Consensus 120 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~g-------~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~-~d~~a 189 (277)
T 3cs3_A 120 KVLLLSGPEKGYDSQERLAVSTRELTRFG-------IPYE--IIQGDFTEPSGYAAAKKILSQPQTEPVDVFAF-NDEMA 189 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHHHHHTT-------CCEE--EEECCSSHHHHHHHHHHHTTSCCCSSEEEEES-SHHHH
T ss_pred eEEEEeCCccCccHHHHHHHHHHHHHHcC-------CCee--EEeCCCChhHHHHHHHHHHhcCCCCCcEEEEc-ChHHH
Confidence 5777765543 233445667777776532 2333 333445677778888888875 578999974 44445
Q ss_pred HHHHHhcCCCC--cc----EEecccCCCCccCCCCCceEecccCchhHHHHHHHHH
Q 002352 97 NFIIQLGNKSQ--VP----ILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAII 146 (932)
Q Consensus 97 ~~v~~~~~~~~--iP----~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l 146 (932)
..+...+.+.+ +| ++++.... ......|.+-.+..+...++...++++
T Consensus 190 ~g~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~a~~~l 243 (277)
T 3cs3_A 190 IGVYKYVAETNYQMGKDIRIIGFDNSE--LGAFVQPRLATIAYSKHRWGMVAAEKI 243 (277)
T ss_dssp HHHHHHHTTSSCCBTTTEEEECSSCCH--HHHHSSSCCBEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcEEEEEeCCcH--HHhccCCceeEEecCHHHHHHHHHHHH
Confidence 55555555554 34 55554322 111112334444445556666666655
No 353
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=28.64 E-value=94 Score=29.81 Aligned_cols=96 Identities=11% Similarity=0.053 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCeEEEEEEEcC--CcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeC
Q 002352 140 GAITAIIKAFGWREAVPIYVDN--QYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML 217 (932)
Q Consensus 140 ~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 217 (932)
..+.+++....-++|++|-... +...+....+.+++++.|.++...... ..+.+++.+.+.+ +|.|++.+
T Consensus 16 ~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~--~~~~~~~~~~l~~-----ad~I~l~G- 87 (206)
T 3l4e_A 16 PLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIA--TESLGEITTKLRK-----NDFIYVTG- 87 (206)
T ss_dssp HHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTT--TSCHHHHHHHHHH-----SSEEEECC-
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec--CCChHHHHHHHHh-----CCEEEECC-
Confidence 3344455444458999886321 122346888999999999876543221 1234455454443 67888765
Q ss_pred hhhHHHHHHHHHhCCccc-------cceEEEEec
Q 002352 218 PSLGSRIFEKANEIGLMN-------KGCVWIMTE 244 (932)
Q Consensus 218 ~~~~~~l~~~a~~~g~~~-------~~~~wi~t~ 244 (932)
.....+++..++.|+.. .|..++++.
T Consensus 88 -G~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~s 120 (206)
T 3l4e_A 88 -GNTFFLLQELKRTGADKLILEEIAAGKLYIGES 120 (206)
T ss_dssp -SCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEET
T ss_pred -CCHHHHHHHHHHCChHHHHHHHHHcCCeEEEEC
Confidence 33335555555555421 244566665
No 354
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=28.54 E-value=2e+02 Score=28.78 Aligned_cols=119 Identities=9% Similarity=-0.099 Sum_probs=67.9
Q ss_pred cEEEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhc-CCeEEEEccCChhH
Q 002352 18 PVNVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNN-VLVQAILGPEKSMQ 95 (932)
Q Consensus 18 ~i~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~~v~aiiGp~~s~~ 95 (932)
.-+|+++....+ .....-..|+.-|+++. |.++... ....+...+.+.+.+++.. +++.||+.... ..
T Consensus 130 ~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~-------g~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d-~~ 199 (297)
T 3rot_A 130 AKRALVLNPQPGHIGLEKRAYGIKTILQDK-------GIFFEEL--DVGTDPNQVQSRVKSYFKIHPETNIIFCLTS-QA 199 (297)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHT-------TCEEEEE--ECCSCHHHHHHHHHHHHHHCTTCCEEEESSH-HH
T ss_pred CceEEEEeCCCCcHHHHHHHHHHHHHHHhc-------CCeEEEe--ecCCChHHHHHHHHHHHHhCCCCCEEEEcCC-cc
Confidence 346888865544 33445567888888775 2334332 2445677888888887764 56899998554 34
Q ss_pred HHHHHHhcCC-------CCccEEecccCCCCccC-CCCCceEecccCchhHHHHHHHHH
Q 002352 96 TNFIIQLGNK-------SQVPILSFSATSPSLTS-IRSSYFFRGSLNDSSQVGAITAII 146 (932)
Q Consensus 96 a~~v~~~~~~-------~~iP~Is~~a~~~~l~~-~~~p~~~r~~ps~~~~~~ai~~~l 146 (932)
+..+...+.. .++.++++......+.. ...|....+..+...++...++++
T Consensus 200 A~g~~~al~~~g~~vP~~dv~vig~D~~~~~~~~i~~~~~lttv~~~~~~~g~~av~~l 258 (297)
T 3rot_A 200 LDPLGQMLLHPDRYDFNYQPQVYSFDKTPNTVSLIHKKLVNYVMDQQPFLMGYLSITQL 258 (297)
T ss_dssp HHHHHHHHHSHHHHTCCCCCEEEEECCCHHHHHHHHTTSCCEEECCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCccCCCceEEEEeCCCHHHHHHHHcCCceEEEecChHHHHHHHHHHH
Confidence 4433333333 36777777654332222 223444445555556666555554
No 355
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=28.26 E-value=74 Score=33.16 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=43.7
Q ss_pred CCCCCHHHHHhCCCcEEE-EcC-hhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEeccccc
Q 002352 661 PTITDFQMLIKSGDNVGY-RKD-SFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYT 730 (932)
Q Consensus 661 ~~i~s~~dL~~~~~~vg~-~~~-s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~ 730 (932)
.+|++++||. |+++-+ ..+ ......++.++.....+ ...|...+|++|- +|+.......+
T Consensus 145 kpI~s~~Dlk--GlKiR~~~~~s~~~~~~~~alGa~pv~m----~~~Evy~ALq~Gv----vDg~e~~~~~~ 206 (328)
T 3u65_B 145 APYASLGQLK--KQTIALSSLDSSVLGTCFRICGFDIKDA----PNARLAPLLKAGS----IDGFLSVHLFT 206 (328)
T ss_dssp SCCSSHHHHH--HSEEEECSTTHHHHHHHHHHHTCEEEEC----TTCCHHHHHHHTS----CCEEEECHHHH
T ss_pred CCCCCHHHHC--CCEEEECCCCChHHHHHHHHCCCeeeec----CHHHHHHHHHcCc----cceEecCHHHH
Confidence 4699999999 998888 454 55677888877643322 3456788999999 99988765443
No 356
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=28.20 E-value=91 Score=30.96 Aligned_cols=79 Identities=6% Similarity=0.038 Sum_probs=51.4
Q ss_pred eEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeCh-hhHHHHHHHH
Q 002352 152 REAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-SLGSRIFEKA 228 (932)
Q Consensus 152 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~l~~~a 228 (932)
+.|+++..+ ++|.......+.+++++.|..+..... ..+...-...+..+...+.|.+|+.... +.....++.+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS---QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMA 78 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 467787753 556667788888899999987764321 1222333456777778889999886433 2223566777
Q ss_pred HhCCc
Q 002352 229 NEIGL 233 (932)
Q Consensus 229 ~~~g~ 233 (932)
.+.|+
T Consensus 79 ~~~~i 83 (271)
T 2dri_A 79 NQANI 83 (271)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77775
No 357
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=27.98 E-value=82 Score=31.42 Aligned_cols=117 Identities=14% Similarity=0.079 Sum_probs=68.4
Q ss_pred EEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhc-CCeEEEEccCChhHHHH
Q 002352 20 NVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNN-VLVQAILGPEKSMQTNF 98 (932)
Q Consensus 20 ~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~~v~aiiGp~~s~~a~~ 98 (932)
+||++....+. ...-..|+.-|+++.+- .+...+.....+...+.+.+.+++.. +++.||+... ...+..
T Consensus 120 ~i~~i~~~~~~-~~~R~~gf~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-d~~a~g 190 (280)
T 3gyb_A 120 HIAHLRVGSGA-GLRRFESFEATMRAHGL-------EPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSSN-DITAIG 190 (280)
T ss_dssp SEEEECCSSHH-HHHHHHHHHHHHHHTTC-------CCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEESS-HHHHHH
T ss_pred eEEEEeCCCch-HHHHHHHHHHHHHHcCc-------CCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEEECC-hHHHHH
Confidence 57777655544 55556677777776422 22222345556788888888888876 4689999854 334443
Q ss_pred HHHhcCCC------CccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHHH
Q 002352 99 IIQLGNKS------QVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIK 147 (932)
Q Consensus 99 v~~~~~~~------~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~ 147 (932)
+...+.+. ++.++++.... +.....|-+-.+..+...++...++++.
T Consensus 191 ~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~av~~l~ 243 (280)
T 3gyb_A 191 ALGAARELGLRVPEDLSIIGYDNTP--LAQTRLINLTTIDDNSIGVGYNAALLLL 243 (280)
T ss_dssp HHHHHHHHTCCTTTTCEEEEESCCH--HHHSTTTCCCEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCeeEEEEECCch--HhhccCCCceEEecCHHHHHHHHHHHHH
Confidence 43333332 45577776432 2222244455555666667776666653
No 358
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=27.89 E-value=2e+02 Score=24.53 Aligned_cols=55 Identities=7% Similarity=-0.010 Sum_probs=31.5
Q ss_pred ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHHhC
Q 002352 166 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEI 231 (932)
Q Consensus 166 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~~~ 231 (932)
.....+...+...|..+... .+. ...+..+....+++++ +....+..++++.++.
T Consensus 29 ~~~~~l~~~L~~~g~~v~~~------~~~---~~al~~l~~~~~dlvi--~~~~~g~~~~~~l~~~ 83 (137)
T 2pln_A 29 VLGGEIEKGLNVKGFMADVT------ESL---EDGEYLMDIRNYDLVM--VSDKNALSFVSRIKEK 83 (137)
T ss_dssp HHHHHHHHHHHHTTCEEEEE------SCH---HHHHHHHHHSCCSEEE--ECSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcEEEEe------CCH---HHHHHHHHcCCCCEEE--EcCccHHHHHHHHHhc
Confidence 34566677777777655421 122 2334444456778877 5555566777776664
No 359
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=27.80 E-value=80 Score=27.38 Aligned_cols=67 Identities=12% Similarity=0.062 Sum_probs=43.3
Q ss_pred EEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEe--ChhhHHHHHHHHHhCCc
Q 002352 156 PIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHM--LPSLGSRIFEKANEIGL 233 (932)
Q Consensus 156 ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~--~~~~~~~l~~~a~~~g~ 233 (932)
+|.+|+. .....+...|++.|.+|... ..+ -...+..+.+..+|++++.. +..++..++++.++.++
T Consensus 12 LiVdD~~---~~~~~l~~~L~~~G~~v~~~-----a~~---g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~i 80 (123)
T 2lpm_A 12 LVVEDES---MIAMLIEDTLCELGHEVAAT-----ASR---MQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNV 80 (123)
T ss_dssp EEESSST---TTSHHHHHHHHHHCCCCCBC-----SCC---HHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCC
T ss_pred EEEeCCH---HHHHHHHHHHHHCCCEEEEE-----ECC---HHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCC
Confidence 4444554 44577778888888776432 112 33455666778999999964 44566778888887664
No 360
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=27.75 E-value=1.1e+02 Score=30.59 Aligned_cols=71 Identities=13% Similarity=-0.035 Sum_probs=47.6
Q ss_pred eHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecc---ccccccccccccccCeEEE
Q 002352 472 SIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILAN---RSKFVEFTLPYTESGVSMI 548 (932)
Q Consensus 472 ~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~---R~~~vdfs~p~~~~~~~~l 548 (932)
--++++.+.++.+ .+++++... +-...+.+|.+|++|+++....+... ....+ ...|+....++++
T Consensus 18 l~~~~~~f~~~~P-~v~i~v~~~---------~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~lvvv 86 (264)
T 4ecf_A 18 VEAAGEQYTGEHL-GTFINVQGG---------GTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGITPI 86 (264)
T ss_dssp HHHHHHHHHHHST-TEEEEEEEE---------CHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEE
T ss_pred HHHHHHHHHHHCC-CceEEEEeC---------CCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEEEEE
Confidence 3467777877774 245555442 35789999999999998876544332 01122 2578899999999
Q ss_pred EEccC
Q 002352 549 VPIKD 553 (932)
Q Consensus 549 v~~~~ 553 (932)
++...
T Consensus 87 v~~~~ 91 (264)
T 4ecf_A 87 VNKKV 91 (264)
T ss_dssp ECTTS
T ss_pred EcCCC
Confidence 98654
No 361
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=27.72 E-value=4.9e+02 Score=26.84 Aligned_cols=131 Identities=6% Similarity=0.073 Sum_probs=70.7
Q ss_pred EEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEE--EEEecCCCCHHHHHHHHHHHHhcCCeEEEEc-cCChhHH
Q 002352 20 NVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLL--LNTRNSKGDVVAAAAAALDLLNNVLVQAILG-PEKSMQT 96 (932)
Q Consensus 20 ~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~--~~~~D~~~~~~~a~~~a~~li~~~~v~aiiG-p~~s~~a 96 (932)
.|+.+|..++ .+-+.+++.|+.++-.+ .+. +.. +++-.-.+.+.-..+.++.- +++|+- ....
T Consensus 46 ~la~lF~e~S---TRTR~SFE~A~~~LGg~------~i~~~l~~-~ss~~kgEsl~DTarvls~~-~D~iviR~~~~--- 111 (328)
T 3grf_A 46 TLLAFFAKPS---LRTRVSLETAMTRLGGH------AIYYELGA-NSNVGGKETVQDTAEVFSRM-VDICTARLATK--- 111 (328)
T ss_dssp EEEEEESSCC---HHHHHHHHHHHHHHTCE------EEEEEC-----------CHHHHHHHHTTT-CSEEEEECSSH---
T ss_pred EEEEEecCCC---chHHHHHHHHHHHCCCe------EEccccCc-cccCCCCCCHHHHHHHHHhh-CCEEEEecCCh---
Confidence 5788886665 34578899999887432 233 333 44333233344444455542 444442 1222
Q ss_pred HHHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHH---HHcC----------CeEEEEEEEcCCc
Q 002352 97 NFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAII---KAFG----------WREAVPIYVDNQY 163 (932)
Q Consensus 97 ~~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~~~----------w~~v~ii~~d~~~ 163 (932)
..+..+++..++|+|.-+. +..+| .+++++++ .++| ..+|+++- |..
T Consensus 112 ~~~~~lA~~~~vPVINag~------~~~HP------------tQaLaDl~Ti~e~~g~~~~~~~~l~gl~va~vG--D~~ 171 (328)
T 3grf_A 112 EMMREMAQHASVPCINALD------DFGHP------------LQMVCDFMTIKEKFTAAGEFSNGFKGIKFAYCG--DSM 171 (328)
T ss_dssp HHHHHHHHHCSSCEEESSC------SSCCH------------HHHHHHHHHHHHHHHHTTCCTTTGGGCCEEEES--CCS
T ss_pred hHHHHHHHhCCCCEEeCCC------CCCCc------------HHHHHHHHHHHHHhCCccccccccCCcEEEEeC--CCC
Confidence 3334455556799998432 12233 56677765 4455 24555553 332
Q ss_pred CCChHHHHHHHHHhCCceeeee
Q 002352 164 GEEMIPSLTDALQAIDTRVPYR 185 (932)
Q Consensus 164 g~~~~~~l~~~l~~~g~~v~~~ 185 (932)
. ..+..+..++...|.++...
T Consensus 172 ~-~va~Sl~~~~~~~G~~v~~~ 192 (328)
T 3grf_A 172 N-NVTYDLMRGCALLGMECHVC 192 (328)
T ss_dssp S-HHHHHHHHHHHHHTCEEEEE
T ss_pred c-chHHHHHHHHHHcCCEEEEE
Confidence 2 57888888998889887654
No 362
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=27.68 E-value=1e+02 Score=28.42 Aligned_cols=63 Identities=16% Similarity=0.174 Sum_probs=41.2
Q ss_pred EEEEEEEcCCc-----CCChHHHHHHH----HHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeC
Q 002352 153 EAVPIYVDNQY-----GEEMIPSLTDA----LQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML 217 (932)
Q Consensus 153 ~v~ii~~d~~~-----g~~~~~~l~~~----l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 217 (932)
++++|...|+- -......+.+. +++.|.++.....++ ++.+.+.+.+++..+.+.|+||..+.
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~--Dd~~~I~~~l~~a~~~~~DlVittGG 78 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVP--EGYDTVVEAIATALKQGARFIITAGG 78 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEEC--SSHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeC--CCHHHHHHHHHHHHhCCCCEEEECCC
Confidence 67777654332 23345778888 888998888776665 45567888888877656899988753
No 363
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=27.29 E-value=87 Score=31.08 Aligned_cols=78 Identities=14% Similarity=0.064 Sum_probs=51.2
Q ss_pred eEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHHH
Q 002352 152 REAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKAN 229 (932)
Q Consensus 152 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a~ 229 (932)
+.|+++..+ ++|...+...+.+++++.|..+..... ..+...-...+..+...+.|.+|+...... ...++.+.
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l~ 79 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYS---DYSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQLLE 79 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEEC---TTCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcC---CCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHH
Confidence 468888753 556667788888999999988764321 223334456677788889998888754322 24556666
Q ss_pred hCCc
Q 002352 230 EIGL 233 (932)
Q Consensus 230 ~~g~ 233 (932)
+.|+
T Consensus 80 ~~~i 83 (275)
T 3d8u_A 80 ASNT 83 (275)
T ss_dssp HHTC
T ss_pred hCCC
Confidence 6564
No 364
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=27.09 E-value=1.8e+02 Score=24.98 Aligned_cols=56 Identities=5% Similarity=-0.049 Sum_probs=39.5
Q ss_pred ChHHHHHHHHHh-CCceeeeeeecCCCCChhHHHHHHHHHhc-CCceEEEEEeC---hhhHHHHHHHHHh
Q 002352 166 EMIPSLTDALQA-IDTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFILHML---PSLGSRIFEKANE 230 (932)
Q Consensus 166 ~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~---~~~~~~l~~~a~~ 230 (932)
.....+...+.+ .|..+... .+ ....+..+.+ ..+|+|++... ..++..++++.++
T Consensus 15 ~~~~~l~~~L~~~~~~~v~~~------~~---~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~ 75 (140)
T 3lua_A 15 YEREKTKIIFDNIGEYDFIEV------EN---LKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRN 75 (140)
T ss_dssp HHHHHHHHHHHHHCCCEEEEE------CS---HHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccEEEE------CC---HHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHh
Confidence 456778888888 78776521 11 3456667777 88999999765 4467888888887
No 365
>1j3m_A The conserved hypothetical protein TT1751; X-RAY crystallography, structural genomics, riken structural genomics/proteomics initiative; 2.00A {Thermus thermophilus} SCOP: d.129.7.1
Probab=27.03 E-value=3e+02 Score=23.69 Aligned_cols=71 Identities=20% Similarity=0.184 Sum_probs=52.2
Q ss_pred CChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHH-H-hcCCceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 165 EEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYK-L-FTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 165 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~-l-~~~~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
.+..+.+++++++.|..|..... ....+.+ + .+..+-.|+..|++..+..+++.-.+.|+..|-.+.+.
T Consensus 13 ~e~~~~l~~al~~~Gf~v~~~id---------~~~~l~~k~g~~~~~~~il~~cnP~~a~~~l~~~p~~g~~lPcrv~V~ 83 (129)
T 1j3m_A 13 AEARAQVEAALKEEGFGILTEID---------VAATLKAKLGLEKPPYLILGACNPNLAARALEALPEIGLLLPCNVVLR 83 (129)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEE---------HHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHCGGGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeC---------HHHHHHHhcCCCCCCeEEEEECCHHHHHHHHHhCHHHHhhcCcEEEEE
Confidence 34578899999999999876533 2233222 1 23556778889999999999999999998888766665
Q ss_pred ec
Q 002352 243 TE 244 (932)
Q Consensus 243 t~ 244 (932)
-+
T Consensus 84 e~ 85 (129)
T 1j3m_A 84 EA 85 (129)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 366
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=26.92 E-value=83 Score=31.31 Aligned_cols=77 Identities=12% Similarity=0.031 Sum_probs=52.1
Q ss_pred CeEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHH-H
Q 002352 151 WREAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFE-K 227 (932)
Q Consensus 151 w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~-~ 227 (932)
-+.|+++..+ ++|...+...+.+++++.|..+..... ..+.......+..+...+.|.||+.... ...++ .
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~~dgiIi~~~~---~~~~~~~ 81 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNS---DNDIKKAQGYLATFVSHNCTGMISTAFN---ENIIENT 81 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECGGG---HHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEecCC---hHHHHHH
Confidence 3568888864 566677788899999999988764322 2234445567778888999999997633 23466 7
Q ss_pred HHhCCc
Q 002352 228 ANEIGL 233 (932)
Q Consensus 228 a~~~g~ 233 (932)
+.+.|+
T Consensus 82 l~~~~i 87 (277)
T 3e61_A 82 LTDHHI 87 (277)
T ss_dssp HHHC-C
T ss_pred HHcCCC
Confidence 777775
No 367
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=26.51 E-value=1.7e+02 Score=25.66 Aligned_cols=67 Identities=10% Similarity=-0.013 Sum_probs=41.8
Q ss_pred EEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEe--ChhhHHHHHHHHHhCC
Q 002352 155 VPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHM--LPSLGSRIFEKANEIG 232 (932)
Q Consensus 155 ~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~--~~~~~~~l~~~a~~~g 232 (932)
++|.+|++ .....+...|++.|..++... .+ -...+..+++..+|+|++.. +.-++..++++.++..
T Consensus 15 ILiVDD~~---~~r~~l~~~L~~~G~~~v~~a-----~~---g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~ 83 (134)
T 3to5_A 15 ILIVDDFS---TMRRIVKNLLRDLGFNNTQEA-----DD---GLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADE 83 (134)
T ss_dssp EEEECSCH---HHHHHHHHHHHHTTCCCEEEE-----SS---HHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred EEEEeCCH---HHHHHHHHHHHHcCCcEEEEE-----CC---HHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCC
Confidence 34444444 445677788888887643221 12 22345556667899999974 4556788888887643
No 368
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=26.46 E-value=2.8e+02 Score=28.61 Aligned_cols=93 Identities=4% Similarity=-0.023 Sum_probs=46.9
Q ss_pred eEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcC
Q 002352 128 FFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM 207 (932)
Q Consensus 128 ~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~ 207 (932)
+|.++++.......|.. .+++.+|+.-..-.....+.+.+.+.+.|+.+.....- .. .+......++...
T Consensus 12 ~~~~~~~~~~~~~~m~~------~~~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~--~~--~~~~~~~~~~~~~ 81 (332)
T 2bon_A 12 LYKKAGSETLYIQGMAE------FPASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTW--EK--GDAARYVEEARKF 81 (332)
T ss_dssp ------------------------CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECC--ST--THHHHHHHHHHHH
T ss_pred eeeeccCcchhhhhhhh------cceEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEec--Cc--chHHHHHHHHHhc
Confidence 45555555544444432 26788887422211145567788888888876544321 11 2233444444456
Q ss_pred CceEEEEEeChhhHHHHHHHHHh
Q 002352 208 QTRVFILHMLPSLGSRIFEKANE 230 (932)
Q Consensus 208 ~~~viil~~~~~~~~~l~~~a~~ 230 (932)
+.|.||+.+.......+++.+.+
T Consensus 82 ~~d~vvv~GGDGTl~~v~~~l~~ 104 (332)
T 2bon_A 82 GVATVIAGGGDGTINEVSTALIQ 104 (332)
T ss_dssp TCSEEEEEESHHHHHHHHHHHHH
T ss_pred CCCEEEEEccchHHHHHHHHHhh
Confidence 78888888888888888888774
No 369
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=26.38 E-value=3e+02 Score=27.21 Aligned_cols=85 Identities=8% Similarity=0.062 Sum_probs=55.7
Q ss_pred HHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeCh--
Q 002352 141 AITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-- 218 (932)
Q Consensus 141 ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-- 218 (932)
.+|...... -.-+.+++ |..|-.+..+.+...-+..++.|.....+ .+ .+ ++...+..++|+|.+.+..
T Consensus 65 ~iA~~y~~~-A~~IsVlT-d~~~F~gs~~dL~~ir~~v~lPvLrKDfi---~~--~~--qi~ea~~~GAD~ilLi~a~l~ 135 (251)
T 1i4n_A 65 DFIRMYDEL-ADAISILT-EKHYFKGDPAFVRAARNLTCRPILAKDFY---ID--TV--QVKLASSVGADAILIIARILT 135 (251)
T ss_dssp HHHHHHHHH-CSEEEEEC-CCSSSCCCTHHHHHHHTTCCSCEEEECCC---CS--TH--HHHHHHHTTCSEEEEEGGGSC
T ss_pred HHHHHHHHh-CCceEEEe-cccccCCCHHHHHHHHHhCCCCEEEeeCC---CC--HH--HHHHHHHcCCCEEEEecccCC
Confidence 344444433 45566666 55555556777777766667766644333 11 23 3555788999999998764
Q ss_pred -hhHHHHHHHHHhCCcc
Q 002352 219 -SLGSRIFEKANEIGLM 234 (932)
Q Consensus 219 -~~~~~l~~~a~~~g~~ 234 (932)
.....+++.|+++||.
T Consensus 136 ~~~l~~l~~~a~~lGl~ 152 (251)
T 1i4n_A 136 AEQIKEIYEAAEELGMD 152 (251)
T ss_dssp HHHHHHHHHHHHTTTCE
T ss_pred HHHHHHHHHHHHHcCCe
Confidence 5678999999999983
No 370
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=26.26 E-value=2.2e+02 Score=22.65 Aligned_cols=57 Identities=11% Similarity=0.163 Sum_probs=37.1
Q ss_pred CCceEecccCchhHHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeee
Q 002352 125 SSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYR 185 (932)
Q Consensus 125 ~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~ 185 (932)
+-+-.|+.-+....-..+-++++.|+-+-|+++..|.+| ++......+..|..+...
T Consensus 25 ngfkvrtvrspqelkdsieelvkkynativvvvvddkew----aekairfvkslgaqvlii 81 (134)
T 2l69_A 25 NGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEW----AEKAIRFVKSLGAQVLII 81 (134)
T ss_dssp TTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHH----HHHHHHHHHHHCCCCEEE
T ss_pred cCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHH----HHHHHHHHHhcCCeEEEE
Confidence 456688888888888888888888887766666654443 333333444455555443
No 371
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=26.21 E-value=3.1e+02 Score=27.60 Aligned_cols=60 Identities=8% Similarity=0.001 Sum_probs=35.7
Q ss_pred CCCHHHHHhCC--CcEEEEc------ChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecc
Q 002352 663 ITDFQMLIKSG--DNVGYRK------DSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEI 727 (932)
Q Consensus 663 i~s~~dL~~~~--~~vg~~~------~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~ 727 (932)
|+|++||.+.. ..+|+.. |.-...+.+.++++...+... +.....+++.+|+ .+++..-.
T Consensus 131 l~sisDL~~~~~~~~~g~~~ef~~r~G~G~~~l~~~YGl~~~~~~~~-~~g~~~~A~~~~~----~~v~~~ws 198 (284)
T 3r6u_A 131 LETVSDVKKWAPQLKLGVDNYWMKLKGNGYQDFTKTYGMTFGGTYPM-QIGLVYDAVKSGK----MDIVLAYS 198 (284)
T ss_dssp CCBSGGGGGGGGGCEEEECTTGGGCSSSSHHHHHHHHCCCCSEEEEC-CGGGHHHHHHHTS----CSEEEEET
T ss_pred CCCHHHHHhhhhceeeccCcccccCchhHHHHHHHHcCCCccccccc-CHHHHHHHHHcCC----CeEEEEeC
Confidence 88999998764 3677654 232344555566643333333 3334578899988 66665543
No 372
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=26.00 E-value=50 Score=34.25 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=45.6
Q ss_pred CCCCCHHHHHhCCCcEEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccc
Q 002352 661 PTITDFQMLIKSGDNVGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPY 729 (932)
Q Consensus 661 ~~i~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~ 729 (932)
.+|++++||. |+++.+..+......++.++... ..-...|...+|++|. +|+.....+.
T Consensus 130 ~pI~s~~Dlk--G~KiR~~~~~~~~~~~~~lGa~p----v~m~~~Evy~ALq~G~----VDg~~~~~~~ 188 (316)
T 2vpn_A 130 EPITSPEDFD--NKKIRTMTNPLLAETYKAFGATP----TPLPWGEVYGGLQTGI----IDGQENPIFW 188 (316)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHHHHHTCEE----EECCGGGHHHHHHHTS----CSEEEEEHHH
T ss_pred CCCCChHHhC--CCEEEeCCCHHHHHHHHHcCCee----eecCHHHHHHHHHcCC----cceeeCCHHH
Confidence 4799999999 99998877777778888887532 2235678899999999 9998865433
No 373
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=25.83 E-value=1.3e+02 Score=30.72 Aligned_cols=80 Identities=11% Similarity=0.098 Sum_probs=51.2
Q ss_pred CeEEEEEEEc-CCcCCChHHHHHHHHHhC-CceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhh-HHHHHHH
Q 002352 151 WREAVPIYVD-NQYGEEMIPSLTDALQAI-DTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSL-GSRIFEK 227 (932)
Q Consensus 151 w~~v~ii~~d-~~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~-~~~l~~~ 227 (932)
-..|+++..+ ++|.......+.+++.+. |..+..... ..+.......+..+...+.|.||+...... ....++.
T Consensus 6 ~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~ 82 (325)
T 2x7x_A 6 HFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSA---GDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVEE 82 (325)
T ss_dssp CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHHH
T ss_pred CeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHH
Confidence 3578888754 334445667778888888 888764322 223334455677777889999988755433 3456777
Q ss_pred HHhCCc
Q 002352 228 ANEIGL 233 (932)
Q Consensus 228 a~~~g~ 233 (932)
+.+.|+
T Consensus 83 ~~~~~i 88 (325)
T 2x7x_A 83 AYQKGI 88 (325)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 777775
No 374
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=25.72 E-value=85 Score=31.58 Aligned_cols=80 Identities=11% Similarity=0.075 Sum_probs=51.2
Q ss_pred CCeEEEEEEEc--C--CcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHH
Q 002352 150 GWREAVPIYVD--N--QYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIF 225 (932)
Q Consensus 150 ~w~~v~ii~~d--~--~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~ 225 (932)
.-+.|+++..+ + +|...+...+.+++++.|..+..... ....+.....+..+...+.|.||+...... ...+
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~ 82 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPH---IHAKDSMVPIRYILETGSADGVIISKIEPN-DPRV 82 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCB---SSGGGTTHHHHHHHHHTCCSEEEEESCCTT-CHHH
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecC---CcchhHHHHHHHHHHcCCccEEEEecCCCC-cHHH
Confidence 44678888874 2 56677788888999999988765422 112222334444566788999988754322 2456
Q ss_pred HHHHhCCc
Q 002352 226 EKANEIGL 233 (932)
Q Consensus 226 ~~a~~~g~ 233 (932)
+.+.+.|+
T Consensus 83 ~~l~~~~i 90 (288)
T 3gv0_A 83 RFMTERNM 90 (288)
T ss_dssp HHHHHTTC
T ss_pred HHHhhCCC
Confidence 67777775
No 375
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=25.50 E-value=2.7e+02 Score=23.58 Aligned_cols=58 Identities=17% Similarity=0.076 Sum_probs=37.3
Q ss_pred ChHHHHHHHHHh-CCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeCh--hhHHHHHHHHHhC
Q 002352 166 EMIPSLTDALQA-IDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP--SLGSRIFEKANEI 231 (932)
Q Consensus 166 ~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~--~~~~~l~~~a~~~ 231 (932)
.....+...+.+ .|..++... .+ ....+..+.+..+++|++.... ..+..++++.++.
T Consensus 19 ~~~~~l~~~L~~~~~~~~v~~~-----~~---~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 79 (143)
T 3cnb_A 19 EFADMLTQFLENLFPYAKIKIA-----YN---PFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKST 79 (143)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEE-----CS---HHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhccCccEEEEE-----CC---HHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhC
Confidence 456777888887 787732221 12 2344555556789999998653 3567888888874
No 376
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=25.44 E-value=2.2e+02 Score=25.04 Aligned_cols=85 Identities=12% Similarity=0.062 Sum_probs=53.1
Q ss_pred EEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhh----HHHHHHHH
Q 002352 153 EAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSL----GSRIFEKA 228 (932)
Q Consensus 153 ~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~----~~~l~~~a 228 (932)
+|.+.....+...-...-+...|+..|.+|.+.-.. .+.+ ..+..+++.++++|.+.+.... ...++++.
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~---~p~e---~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l 78 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVL---SPQE---LFIKAAIETKADAILVSSLYGQGEIDCKGLRQKC 78 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEE---ECHH---HHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHH
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCC---CCHH---HHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHH
Confidence 555555555544444566778889999998865431 2233 4455555678999999875433 46677788
Q ss_pred HhCCccccceEEEEec
Q 002352 229 NEIGLMNKGCVWIMTE 244 (932)
Q Consensus 229 ~~~g~~~~~~~wi~t~ 244 (932)
++.|.. .-.+|+...
T Consensus 79 ~~~g~~-~i~v~vGG~ 93 (137)
T 1ccw_A 79 DEAGLE-GILLYVGGN 93 (137)
T ss_dssp HHTTCT-TCEEEEEES
T ss_pred HhcCCC-CCEEEEECC
Confidence 887763 234555543
No 377
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=25.41 E-value=73 Score=34.40 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=53.4
Q ss_pred HHHHHHHcCCeEEEEEEEcCCcC-CChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChh-
Q 002352 142 ITAIIKAFGWREAVPIYVDNQYG-EEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS- 219 (932)
Q Consensus 142 i~~~l~~~~w~~v~ii~~d~~~g-~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~- 219 (932)
+.++++ +| +++.+|+.+.... .+..+.+.+.|+ |+++..-..+.++++.+.+.+.+..+++.++|+||-.+.+.
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 118 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSV 118 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEESHHH
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchH
Confidence 455566 67 8998888543222 235677777776 76654322333455667788888888889999999776654
Q ss_pred -hHHHHHHHH
Q 002352 220 -LGSRIFEKA 228 (932)
Q Consensus 220 -~~~~l~~~a 228 (932)
++..++...
T Consensus 119 iD~AK~iA~~ 128 (408)
T 1oj7_A 119 LDGTKFIAAA 128 (408)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 445555543
No 378
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=25.38 E-value=54 Score=32.62 Aligned_cols=86 Identities=8% Similarity=0.001 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHH-----HcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCC---CCChhHHHHHHHHHhcC
Q 002352 136 SSQVGAITAIIK-----AFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISP---LATDDQIEKELYKLFTM 207 (932)
Q Consensus 136 ~~~~~ai~~~l~-----~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~---~~~~~~~~~~l~~l~~~ 207 (932)
...++.+++.+. ...-++|.++..+ ...+.|.+.|++.|..|.....|.. .....++. ..+...
T Consensus 113 ~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~-----~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~---~~l~~~ 184 (254)
T 4es6_A 113 GDDSEALLALPAFQDSLRVHDPKVLIMRGE-----GGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELL---ARVRAE 184 (254)
T ss_dssp CCSHHHHHTCHHHHHHTCSSSCEEEEEECS-----SCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHH---HHHHHT
T ss_pred CCCHHHHHHhHhhcccccCCCCEEEEEcCC-----ccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHH---HHHHhC
Confidence 344677777775 3445788776643 2345677899999988765544321 22222333 334446
Q ss_pred CceEEEEEeChhhHHHHHHHHHh
Q 002352 208 QTRVFILHMLPSLGSRIFEKANE 230 (932)
Q Consensus 208 ~~~viil~~~~~~~~~l~~~a~~ 230 (932)
+.|+|+ ..++..+..+++.+.+
T Consensus 185 ~~d~v~-ftS~s~v~~~~~~~~~ 206 (254)
T 4es6_A 185 RLNGLV-VSSGQGLQNLYQLAAA 206 (254)
T ss_dssp TCCEEE-CCSHHHHHHHHHHHGG
T ss_pred CCCEEE-EcCHHHHHHHHHHhhH
Confidence 677655 5667777778776654
No 379
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=25.28 E-value=1.3e+02 Score=27.90 Aligned_cols=61 Identities=16% Similarity=0.088 Sum_probs=37.0
Q ss_pred EEEEEEEcCCc--C---CChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEe
Q 002352 153 EAVPIYVDNQY--G---EEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHM 216 (932)
Q Consensus 153 ~v~ii~~d~~~--g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 216 (932)
++++|...|+- | ......+.+.+++.|+.+.....++ ++.+.+...++++.+ ..|+||..+
T Consensus 5 ~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~--Dd~~~I~~~l~~a~~-~~DlVittG 70 (172)
T 3kbq_A 5 NASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVM--DDLDEIGWAFRVALE-VSDLVVSSG 70 (172)
T ss_dssp EEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHH-HCSEEEEES
T ss_pred EEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHh-cCCEEEEcC
Confidence 56666654331 2 2345677778888888887766654 344556666665543 267666654
No 380
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=25.10 E-value=2.2e+02 Score=24.50 Aligned_cols=56 Identities=9% Similarity=0.052 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeC--hhhHHHHHHHHHh
Q 002352 166 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML--PSLGSRIFEKANE 230 (932)
Q Consensus 166 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~l~~~a~~ 230 (932)
.....+...+...|..|... .+.. ..+..+....+++||+... ...+..++++.++
T Consensus 19 ~~~~~l~~~L~~~g~~v~~~------~~~~---~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 76 (147)
T 2zay_A 19 PALAASISALSQEGFDIIQC------GNAI---EAVPVAVKTHPHLIITEANMPKISGMDLFNSLKK 76 (147)
T ss_dssp GGGHHHHHHHHHHTEEEEEE------SSHH---HHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCeEEEe------CCHH---HHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHc
Confidence 45677778888878765421 1222 3444455567999999854 3456788888887
No 381
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=24.97 E-value=3.3e+02 Score=26.04 Aligned_cols=88 Identities=13% Similarity=-0.005 Sum_probs=56.4
Q ss_pred eEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEE--EeChh----hHHHHH
Q 002352 152 REAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIL--HMLPS----LGSRIF 225 (932)
Q Consensus 152 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil--~~~~~----~~~~l~ 225 (932)
.+|.+.....+...-...-+...|+..|.+|.+--. ..+ ....+..+++.++++|.+ .+... ....++
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~---~vp---~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i 166 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGV---DVL---NENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLM 166 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCS---SCC---HHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCC---CCC---HHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHH
Confidence 356555555555555567777888999999876422 223 334556666789999999 65433 357788
Q ss_pred HHHHhCCccccceEEEEecc
Q 002352 226 EKANEIGLMNKGCVWIMTEG 245 (932)
Q Consensus 226 ~~a~~~g~~~~~~~wi~t~~ 245 (932)
++.++.|....-.+|++...
T Consensus 167 ~~l~~~~~~~~v~v~vGG~~ 186 (215)
T 3ezx_A 167 DRLNEEKLRDSVKCMFGGAP 186 (215)
T ss_dssp HHHHHTTCGGGSEEEEESSS
T ss_pred HHHHHcCCCCCCEEEEECCC
Confidence 88888886433345666543
No 382
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=24.89 E-value=76 Score=31.97 Aligned_cols=79 Identities=8% Similarity=-0.019 Sum_probs=50.8
Q ss_pred CeEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHH---HHHHHhcCCceEEEEEeChhhHHHHH
Q 002352 151 WREAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEK---ELYKLFTMQTRVFILHMLPSLGSRIF 225 (932)
Q Consensus 151 w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~---~l~~l~~~~~~viil~~~~~~~~~l~ 225 (932)
-+.|+++..+ ++|.......+.+++++.|..+..... ..+...-.. .++.+.+.+.|.||+...... ...+
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~ 83 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATG---CGESTPREQALEAVRFLIGRDCDGVVVISHDLH-DEDL 83 (290)
T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECC---CSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-HHHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeC---CCchhhhhhHHHHHHHHHhcCccEEEEecCCCC-HHHH
Confidence 3578888753 556667788888899999988764321 112223344 677777889999988754332 3455
Q ss_pred HHHHhCCc
Q 002352 226 EKANEIGL 233 (932)
Q Consensus 226 ~~a~~~g~ 233 (932)
+.+.+.|+
T Consensus 84 ~~l~~~~i 91 (290)
T 2rgy_A 84 DELHRMHP 91 (290)
T ss_dssp HHHHHHCS
T ss_pred HHHhhcCC
Confidence 66666665
No 383
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=24.80 E-value=2.1e+02 Score=24.34 Aligned_cols=57 Identities=12% Similarity=0.004 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeCh-------hhHHHHHHHHHhC
Q 002352 166 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-------SLGSRIFEKANEI 231 (932)
Q Consensus 166 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-------~~~~~l~~~a~~~ 231 (932)
.....+...+++.|..+... .+. ...+..+.+..++++++.... ..+..++++.++.
T Consensus 14 ~~~~~l~~~L~~~g~~v~~~------~~~---~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~ 77 (140)
T 2qr3_A 14 GVLTAVQLLLKNHFSKVITL------SSP---VSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQ 77 (140)
T ss_dssp HHHHHHHHHHTTTSSEEEEE------CCH---HHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcEEEEe------CCH---HHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhh
Confidence 45677888888888766521 122 334455556789999998653 3567777777764
No 384
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=24.63 E-value=4.2e+02 Score=26.51 Aligned_cols=87 Identities=14% Similarity=0.097 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeC--
Q 002352 140 GAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML-- 217 (932)
Q Consensus 140 ~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~-- 217 (932)
..+|......|-..+.++....-++ +..+.+...-+..++.|.....+. +. + ++...+..++|.|++.+.
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~~f~-Gs~~~L~~ir~~v~lPVl~Kdfi~---d~--~--qi~ea~~~GAD~VlLi~a~L 153 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTPSFQ-GAPEFLTAARQACSLPALRKDFLF---DP--Y--QVYEARSWGADCILIIMASV 153 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCSTTTC-CCHHHHHHHHHTSSSCEEEESCCC---ST--H--HHHHHHHTTCSEEEEETTTS
T ss_pred HHHHHHHHHCCCCEEEEeccccccC-CCHHHHHHHHHhcCCCEEECCccC---CH--H--HHHHHHHcCCCEEEEccccc
Confidence 4466667778888888888555554 456677666556677665433321 11 1 466677899999998753
Q ss_pred -hhhHHHHHHHHHhCCcc
Q 002352 218 -PSLGSRIFEKANEIGLM 234 (932)
Q Consensus 218 -~~~~~~l~~~a~~~g~~ 234 (932)
..+...++..+++.||.
T Consensus 154 ~~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 154 DDDLAKELEDTAFALGMD 171 (272)
T ss_dssp CHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHcCCe
Confidence 45678899999999973
No 385
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=24.42 E-value=2.5e+02 Score=23.96 Aligned_cols=58 Identities=9% Similarity=0.024 Sum_probs=38.7
Q ss_pred ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEe-ChhhHHHHHHHHHhCC
Q 002352 166 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHM-LPSLGSRIFEKANEIG 232 (932)
Q Consensus 166 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~-~~~~~~~l~~~a~~~g 232 (932)
.....+...+.+.|..+... .+ ....+..+....+++|++.. ....+..++++.++..
T Consensus 15 ~~~~~l~~~L~~~g~~v~~~------~~---~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~ 73 (142)
T 2qxy_A 15 ITFLAVKNALEKDGFNVIWA------KN---EQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEF 73 (142)
T ss_dssp HHHHHHHHHHGGGTCEEEEE------SS---HHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCEEEEE------CC---HHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHC
Confidence 45677888888888776521 12 33456666678899999986 2235667777777653
No 386
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=24.29 E-value=20 Score=34.92 Aligned_cols=35 Identities=26% Similarity=0.100 Sum_probs=30.8
Q ss_pred HhcCCeEEEEccCChhHHHHHHHhcCCCCccEEec
Q 002352 79 LNNVLVQAILGPEKSMQTNFIIQLGNKSQVPILSF 113 (932)
Q Consensus 79 i~~~~v~aiiGp~~s~~a~~v~~~~~~~~iP~Is~ 113 (932)
+...+|..|+||..|.=......+++++++|+|+.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIst 60 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS 60 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcH
Confidence 34567999999999999999999999999999984
No 387
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=24.28 E-value=1.5e+02 Score=29.81 Aligned_cols=45 Identities=9% Similarity=-0.093 Sum_probs=30.7
Q ss_pred CHHHHHHHHHcCcccEEEeeeeeeccccccccccccccccCeEEEEEcc
Q 002352 504 SYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIK 552 (932)
Q Consensus 504 s~~~li~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~ 552 (932)
+...++..|.+|++|+++..... ....+. ..|.....+++++++.
T Consensus 128 ~~~~~~~~l~~g~~D~~i~~~~~---~~~~l~-~~~l~~~~~~~v~~~~ 172 (303)
T 3isp_A 128 DQDHSARLLREGVAMGAVTTERN---PVPGCR-VHPLGEMRYLPVASRP 172 (303)
T ss_dssp CHHHHHHHHHTTSCSEEEESCCS---CCTTEE-EEEEEEEEEEEEECHH
T ss_pred ChHHHHHHHHcCcceEEEecCCC---CCCCeE-EEEccceeEEEEecch
Confidence 36789999999999998763322 122232 3677778888888754
No 388
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=24.28 E-value=2.4e+02 Score=23.79 Aligned_cols=58 Identities=12% Similarity=0.039 Sum_probs=37.3
Q ss_pred ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCC-ceEEEEEeC--hhhHHHHHHHHHhCC
Q 002352 166 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ-TRVFILHML--PSLGSRIFEKANEIG 232 (932)
Q Consensus 166 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~-~~viil~~~--~~~~~~l~~~a~~~g 232 (932)
.....+...+.+.|..+... .+. ...+..+.... +++|++... ..++..++++.++.+
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~------~~~---~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 78 (136)
T 3hdv_A 18 VNREALILYLKSRGIDAVGA------DGA---EEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASE 78 (136)
T ss_dssp HHHHHHHHHHHHTTCCEEEE------SSH---HHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHcCceEEEe------CCH---HHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcC
Confidence 35677788888888766432 122 23444444455 899998754 446788888888764
No 389
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=24.26 E-value=1.1e+02 Score=31.30 Aligned_cols=79 Identities=11% Similarity=0.020 Sum_probs=51.1
Q ss_pred EEEEEEEcCC-cCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeCh-hhHHHHHHHHHh
Q 002352 153 EAVPIYVDNQ-YGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-SLGSRIFEKANE 230 (932)
Q Consensus 153 ~v~ii~~d~~-~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~l~~~a~~ 230 (932)
+|+++..+.. |.......+.+++++.|..+.... +...+.......++.+...+.|.||+.... ......++.+.+
T Consensus 3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 80 (313)
T 2h3h_A 3 TIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFV--PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALE 80 (313)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEEC--CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH
Confidence 5777764321 666777888888888898876432 112233344566777777889999886543 333456777777
Q ss_pred CCc
Q 002352 231 IGL 233 (932)
Q Consensus 231 ~g~ 233 (932)
.|+
T Consensus 81 ~~i 83 (313)
T 2h3h_A 81 MGI 83 (313)
T ss_dssp TTC
T ss_pred CCC
Confidence 775
No 390
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=24.25 E-value=1e+02 Score=31.25 Aligned_cols=100 Identities=12% Similarity=0.043 Sum_probs=58.3
Q ss_pred CCCHHHH-HhCCCcEEEEcChhHHHHHHhcCCCcccccccCCHHHHHHHhhcccCCCceeEEEecccccccccccCCcce
Q 002352 663 ITDFQML-IKSGDNVGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIAAAFDEIPYTKPFIGQYCSKY 741 (932)
Q Consensus 663 i~s~~dL-~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~l 741 (932)
+++++|| . +++|++.--...+.||.+.+.+-.-+..+.+.|-+ -..|- .|++++=...-.-+.++ +|
T Consensus 106 ~~~~~~l~~--~~RIATkyp~l~~~yf~~~gi~~~ii~l~GsvE~a---p~~Gl----ADaIvDivsTG~TLraN---gL 173 (289)
T 2vd3_A 106 IRGPEDIPR--GAVIATEFPGITENYLREHGIDAEVVELTGSTEIA---PFIGV----ADLITDLSSTGTTLRMN---HL 173 (289)
T ss_dssp CCSGGGCCT--TCEEEESCHHHHHHHHHHTTCCCEEEECSSCGGGT---TTTTS----CSEEEEEESSTHHHHHT---TE
T ss_pred CCCHHHhcC--CCEEEeCcHHHHHHHHHHcCCcEEEEECCCceeec---cCCCc----ccEEEEEeCChHHHHHC---CC
Confidence 5678888 6 78999877777899998877754444455566532 33455 67777654444333333 36
Q ss_pred EEecccccccceEEEecCCC-CC-hHHHHHHHHhhh
Q 002352 742 TLIERTFETAGFGFAFPLHS-PL-VPEVSRAILNVT 775 (932)
Q Consensus 742 ~~~~~~~~~~~~~~~~~k~s-~l-~~~in~~il~l~ 775 (932)
..++..+.+ .-.++..+.+ +. .+.+++.+.++.
T Consensus 174 ~~ie~I~~s-sA~LI~n~~s~~~k~~~i~~l~~rl~ 208 (289)
T 2vd3_A 174 RVIDTILES-SVKLIANRESYATKSGIIEELRTGIR 208 (289)
T ss_dssp EEEEEEEEE-CEEEEECHHHHHHSHHHHHHHHHHHH
T ss_pred EEeEEEEee-EEEEEEccchhhhHHHHHHHHHHHHH
Confidence 666555444 4445555554 22 234555554443
No 391
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=23.86 E-value=1.5e+02 Score=30.28 Aligned_cols=134 Identities=10% Similarity=0.039 Sum_probs=72.6
Q ss_pred EEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCC--eEEEEccCChhHHH
Q 002352 20 NVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNVL--VQAILGPEKSMQTN 97 (932)
Q Consensus 20 ~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~~--v~aiiGp~~s~~a~ 97 (932)
.|+.+|..++ .+-+.+++.|+.++.. ..+.+...+++-.-.+.+.-..+.++.-+ +.++=.+.. ....
T Consensus 38 ~la~lF~e~S---TRTR~SFE~A~~~LGg------~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~~-~~~~ 107 (304)
T 3r7f_A 38 FAANLFFEPS---TRTRFSFEVAEKKLGM------NVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSED-EYYE 107 (304)
T ss_dssp EEEEEESSCC---SHHHHHHHHHHHHTTC------EEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSST-TCHH
T ss_pred EEEEEecCCC---hhHHHhHHHHHHHCCC------eEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCCh-hHHH
Confidence 4788887665 3447789999887632 33444333332221122333333343333 334444433 3333
Q ss_pred HHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHH---HHcC---CeEEEEEEEcCCcCCChHHHH
Q 002352 98 FIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAII---KAFG---WREAVPIYVDNQYGEEMIPSL 171 (932)
Q Consensus 98 ~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~~~---w~~v~ii~~d~~~g~~~~~~l 171 (932)
.+ ++..++|+|.-+.+ +..+| .+++++++ .++| ..+|+++- |......+.++
T Consensus 108 ~l---a~~~~vPVINagdg-----~~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vG--D~~~~rva~Sl 165 (304)
T 3r7f_A 108 EL---VSQVNIPILNAGDG-----CGQHP------------TQSLLDLMTIYEEFNTFKGLTVSIHG--DIKHSRVARSN 165 (304)
T ss_dssp HH---HHHCSSCEEESCCT-----TSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES--CCTTCHHHHHH
T ss_pred HH---HHhCCCCEEeCCCC-----CCcCc------------HHHHHHHHHHHHHhCCCCCCEEEEEc--CCCCcchHHHH
Confidence 33 34567999984321 12233 66777775 4444 35666653 32223468888
Q ss_pred HHHHHhCCceeeee
Q 002352 172 TDALQAIDTRVPYR 185 (932)
Q Consensus 172 ~~~l~~~g~~v~~~ 185 (932)
..++...|.++...
T Consensus 166 ~~~~~~~G~~v~~~ 179 (304)
T 3r7f_A 166 AEVLTRLGARVLFS 179 (304)
T ss_dssp HHHHHHTTCEEEEE
T ss_pred HHHHHHcCCEEEEE
Confidence 89999999887654
No 392
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=23.55 E-value=3.4e+02 Score=22.99 Aligned_cols=56 Identities=9% Similarity=-0.012 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeC--hhhHHHHHHHHHh
Q 002352 166 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML--PSLGSRIFEKANE 230 (932)
Q Consensus 166 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~l~~~a~~ 230 (932)
.....+...++..|..|... .+ ....+..+.+..+++|++... ...+..++++.++
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~------~~---~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 75 (142)
T 3cg4_A 18 HVRIAVKTILSDAGFHIISA------DS---GGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILD 75 (142)
T ss_dssp HHHHHHHHHHHHTTCEEEEE------SS---HHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCeEEEEe------CC---HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 45677888888888765421 12 334555666678999999865 3356788888887
No 393
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=23.37 E-value=87 Score=31.84 Aligned_cols=79 Identities=4% Similarity=-0.015 Sum_probs=51.4
Q ss_pred eEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhh-HHHHHHHH
Q 002352 152 REAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSL-GSRIFEKA 228 (932)
Q Consensus 152 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~-~~~l~~~a 228 (932)
.+|+++..+ +.|.......+++++++.|..+..... ..+...-...++.+...+.|.||+...... ....++.+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG---QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEA 79 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHH
Confidence 467887753 455666778888889899988764321 223334455677777788999988654432 24566777
Q ss_pred HhCCc
Q 002352 229 NEIGL 233 (932)
Q Consensus 229 ~~~g~ 233 (932)
.+.|+
T Consensus 80 ~~~~i 84 (306)
T 2vk2_A 80 KDAEI 84 (306)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77675
No 394
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=23.32 E-value=3.4e+02 Score=22.97 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=36.9
Q ss_pred ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeC--hhhHHHHHHHHHhC
Q 002352 166 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML--PSLGSRIFEKANEI 231 (932)
Q Consensus 166 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~l~~~a~~~ 231 (932)
.....+...+...|..+... .+. ...+..+....++++++... ..++..+++..++.
T Consensus 14 ~~~~~l~~~L~~~g~~v~~~------~~~---~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 72 (138)
T 3c3m_A 14 MIVDVFVTMLERGGYRPITA------FSG---EECLEALNATPPDLVLLDIMMEPMDGWETLERIKTD 72 (138)
T ss_dssp HHHHHHHHHHHHTTCEEEEE------SSH---HHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCceEEEe------CCH---HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 45667778888888765421 122 23444555678999999864 34567788888774
No 395
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=23.25 E-value=2e+02 Score=28.89 Aligned_cols=86 Identities=5% Similarity=-0.042 Sum_probs=53.8
Q ss_pred HHHHHHcCCeEEEEEEEc--CCcCC-ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChh
Q 002352 143 TAIIKAFGWREAVPIYVD--NQYGE-EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS 219 (932)
Q Consensus 143 ~~~l~~~~w~~v~ii~~d--~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~ 219 (932)
|+-++.-.-+.|+++..+ +.|-. .+...+.+++++.|..+..... ..+...-...++.+...+.|.||+.....
T Consensus 5 Ar~L~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 81 (301)
T 3miz_A 5 ARLIRSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANT---GGSSEREVEIWKMFQSHRIDGVLYVTMYR 81 (301)
T ss_dssp -------CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEEEEEE
T ss_pred HHHHhhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 344444455789999864 45666 8899999999999988765432 22334455677788888999998865433
Q ss_pred hHHHHHHHHHhCCc
Q 002352 220 LGSRIFEKANEIGL 233 (932)
Q Consensus 220 ~~~~l~~~a~~~g~ 233 (932)
.. .+..+.+.|+
T Consensus 82 ~~--~~~~~~~~~i 93 (301)
T 3miz_A 82 RI--VDPESGDVSI 93 (301)
T ss_dssp EE--CCCCCTTCCC
T ss_pred cH--HHHHHHhCCC
Confidence 22 4444555554
No 396
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=23.14 E-value=1.1e+02 Score=31.64 Aligned_cols=79 Identities=11% Similarity=0.016 Sum_probs=52.0
Q ss_pred CeEEEEEEE--cCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHH
Q 002352 151 WREAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKA 228 (932)
Q Consensus 151 w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a 228 (932)
-+.|+++.. .++|...+...+.+++++.|..+..... ..+.+.-...++.+...+.|.||+....... ..++.+
T Consensus 60 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~l 135 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNS---DQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVEEL 135 (332)
T ss_dssp CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEEC---CSHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC---CCChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHH
Confidence 357888875 3667777888889999999988765321 1122334456777778889988886543222 456666
Q ss_pred HhCCc
Q 002352 229 NEIGL 233 (932)
Q Consensus 229 ~~~g~ 233 (932)
.+.|+
T Consensus 136 ~~~~i 140 (332)
T 2hsg_A 136 KKSPV 140 (332)
T ss_dssp TTSSS
T ss_pred HhCCC
Confidence 66665
No 397
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=23.13 E-value=92 Score=32.15 Aligned_cols=79 Identities=10% Similarity=0.048 Sum_probs=51.8
Q ss_pred eEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCC--ceEEEEEeChhh-HHHHHH
Q 002352 152 REAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ--TRVFILHMLPSL-GSRIFE 226 (932)
Q Consensus 152 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~-~~~l~~ 226 (932)
+.|+++..+ ++|.......+.+++++.|..+..... ..+...-...++.+...+ .|.||+...... ....++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~~~ 82 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTT---EGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVE 82 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEEC---TTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC---CCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHHHH
Confidence 468888753 456667778888889999988764321 223333445667777777 999888655433 345677
Q ss_pred HHHhCCc
Q 002352 227 KANEIGL 233 (932)
Q Consensus 227 ~a~~~g~ 233 (932)
.+.+.|+
T Consensus 83 ~~~~~~i 89 (332)
T 2rjo_A 83 ACSKAGA 89 (332)
T ss_dssp HHHHHTC
T ss_pred HHHHCCC
Confidence 7776665
No 398
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=23.05 E-value=2.9e+02 Score=22.17 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=37.4
Q ss_pred ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeCh--hhHHHHHHHHHhCC
Q 002352 166 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP--SLGSRIFEKANEIG 232 (932)
Q Consensus 166 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~--~~~~~l~~~a~~~g 232 (932)
.....+...+...|..+... .+.. ..+..+.+..++++++.... .....++++.++..
T Consensus 12 ~~~~~l~~~l~~~g~~v~~~------~~~~---~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~ 71 (119)
T 2j48_A 12 EAATVVCEMLTAAGFKVIWL------VDGS---TALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQ 71 (119)
T ss_dssp HHHHHHHHHHHHTTCEEEEE------SCHH---HHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCcEEEEe------cCHH---HHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcc
Confidence 44677788888888766432 1222 33444455679999998653 35677888887754
No 399
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=22.67 E-value=48 Score=32.83 Aligned_cols=74 Identities=9% Similarity=-0.074 Sum_probs=47.2
Q ss_pred EEeHHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecccc---ccccccccccccCeE
Q 002352 470 GYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRS---KFVEFTLPYTESGVS 546 (932)
Q Consensus 470 G~~~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~~~it~~R~---~~vdfs~p~~~~~~~ 546 (932)
|+--+|...+.++.|.++.+.+ . .-..++.++.+|.+|+.+..-....+.. ....-..+|....++
T Consensus 19 ~ll~eL~~~Fek~~gv~V~~~~--~---------gSg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~~~~~~~~a~N~LV 87 (242)
T 3kn3_A 19 GLLDVLAPAYKKDTGVDLKWVA--V---------GTGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVMYNDFV 87 (242)
T ss_dssp THHHHHHHHHHHHHSCEEEEEE--E---------CHHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEEEEECSCEE
T ss_pred hHHHHHHHHHHHHhCCeEEEEE--c---------CcHHHHHHHhcCCCCEEEecChHhHHHHHhcCCCccceEEEcceEE
Confidence 4455788888888785544433 2 2468999999999999865432222211 001123678889999
Q ss_pred EEEEccCC
Q 002352 547 MIVPIKDN 554 (932)
Q Consensus 547 ~lv~~~~~ 554 (932)
+++|+.++
T Consensus 88 LV~P~~~P 95 (242)
T 3kn3_A 88 IIGNPSFK 95 (242)
T ss_dssp EEECTHHH
T ss_pred EEEeCCCc
Confidence 99987643
No 400
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=22.53 E-value=1.1e+02 Score=30.38 Aligned_cols=70 Identities=10% Similarity=0.031 Sum_probs=47.2
Q ss_pred HHHHHcCCeEEEEEEEc--CCcCCChHHHHHHHHHhCCce-eeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEe
Q 002352 144 AIIKAFGWREAVPIYVD--NQYGEEMIPSLTDALQAIDTR-VPYRSVISPLATDDQIEKELYKLFTMQTRVFILHM 216 (932)
Q Consensus 144 ~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 216 (932)
+-++.-.-+.|+++..+ ++|.......+.+++++.|.. +... ....+...-...++.+.+.+.|.||+..
T Consensus 3 r~L~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 3 LTLYQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISF---STNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp -----CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hhhhcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEE---eCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 33444455789998865 566677788899999999988 5542 1223344455667788889999999887
No 401
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=22.52 E-value=1.8e+02 Score=29.00 Aligned_cols=78 Identities=8% Similarity=-0.082 Sum_probs=50.9
Q ss_pred CeEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChhhHHHHHHHH
Q 002352 151 WREAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKA 228 (932)
Q Consensus 151 w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~l~~~a 228 (932)
-+.|+++..+ ++|.......+.+++++.|..+..... ..+...-...++.+...+.|.||+....... ..++.+
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~l 83 (285)
T 3c3k_A 8 TGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNT---ESDLARSRSCLTLLSGKMVDGVITMDALSEL-PELQNI 83 (285)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHTHHHHTTCCSEEEECCCGGGH-HHHHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEeCCCCCh-HHHHHH
Confidence 3578888863 566677788888999999988764321 2233334556777778899999887543222 344555
Q ss_pred HhCCc
Q 002352 229 NEIGL 233 (932)
Q Consensus 229 ~~~g~ 233 (932)
. .|+
T Consensus 84 ~-~~i 87 (285)
T 3c3k_A 84 I-GAF 87 (285)
T ss_dssp H-TTS
T ss_pred h-cCC
Confidence 5 564
No 402
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=22.17 E-value=1.9e+02 Score=27.24 Aligned_cols=67 Identities=9% Similarity=0.042 Sum_probs=44.5
Q ss_pred cCCeEEEEEEEcCC-----cCCChHHHHHHHHHh---CCceeeeeeecCCCCChhHHHHHHHHHhc-CCceEEEEEeC
Q 002352 149 FGWREAVPIYVDNQ-----YGEEMIPSLTDALQA---IDTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFILHML 217 (932)
Q Consensus 149 ~~w~~v~ii~~d~~-----~g~~~~~~l~~~l~~---~g~~v~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~ 217 (932)
+.--++++|...|+ .-......+...+++ .|..+.....++ ++.+.+.+.+.+..+ .++|+||..+.
T Consensus 12 ~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~--Dd~~~I~~al~~a~~~~~~DlVIttGG 87 (189)
T 1jlj_A 12 DHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP--DEIEEIKETLIDWCDEKELNLILTTGG 87 (189)
T ss_dssp -CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEEC--SCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred cCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeC--CCHHHHHHHHHHHhhcCCCCEEEEcCC
Confidence 33357888876544 112335677888887 788888766665 455678888887654 37899988754
No 403
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=21.98 E-value=2.1e+02 Score=28.42 Aligned_cols=121 Identities=11% Similarity=0.032 Sum_probs=67.0
Q ss_pred EEEEEEeCCC-ccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhc-CCeEEEEccCChhHHH
Q 002352 20 NVGLVLDMNG-EDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNN-VLVQAILGPEKSMQTN 97 (932)
Q Consensus 20 ~IG~i~~~s~-~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~-~~v~aiiGp~~s~~a~ 97 (932)
+||++....+ .....-..|+.-|+++.+-.. .. .. +.....+...+.+.+.+++.. +++.||+.. +...+.
T Consensus 129 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~---~~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~ 201 (289)
T 3g85_A 129 SAAAILTESLNDAMDNRNKGFIETCHKNGIKI---SE--NH-IIAAENSIHGGVDAAKKLMKLKNTPKALFCN-SDSIAL 201 (289)
T ss_dssp BCEEEECCCSSHHHHHHHHHHHHHHHHTTCBC---CG--GG-EEECCSSHHHHHHHHHHHTTSSSCCSEEEES-SHHHHH
T ss_pred EEEEEeCCcccccHHHHHHHHHHHHHHcCCCC---Ch--hh-eeccCCCHHHHHHHHHHHHcCCCCCcEEEEc-CCHHHH
Confidence 5677765543 223445567777776643211 00 01 123445777888888888875 468999974 444444
Q ss_pred HHHHhcCCCC--cc----EEecccCCCCccCCCCCceEecccCchhHHHHHHHHHH
Q 002352 98 FIIQLGNKSQ--VP----ILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAIIK 147 (932)
Q Consensus 98 ~v~~~~~~~~--iP----~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~ 147 (932)
.+...+.+.+ +| ++++...+..+.....|-+-.+..+...++...++++.
T Consensus 202 g~~~al~~~g~~vP~di~vig~d~~~~~~~~~~~p~lttv~~~~~~~g~~a~~~l~ 257 (289)
T 3g85_A 202 GVISVLNKRQISIPDDIEIVAIGMNDREYTEFSTPPVTIVDIPIEEMAGTCISLVE 257 (289)
T ss_dssp HHHHHHHHTTCCTTTTCEEEEEECSCHHHHHSSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCceEEEEeCCCCcchhhccCCCCeEEcCCHHHHHHHHHHHHH
Confidence 4444444433 33 77776222223333344455556666777777777763
No 404
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=21.69 E-value=2e+02 Score=24.45 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeCh----hhHHHHHHHHHhCC
Q 002352 166 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP----SLGSRIFEKANEIG 232 (932)
Q Consensus 166 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~----~~~~~l~~~a~~~g 232 (932)
.....+...+.+.|..+... .+ ....+..+.+..+++|++...- .++..++++.++.+
T Consensus 17 ~~~~~l~~~L~~~g~~v~~~------~~---~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~ 78 (136)
T 3kto_A 17 DARAALSKLLSPLDVTIQCF------AS---AESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRG 78 (136)
T ss_dssp HHHHHHHHHHTTSSSEEEEE------SS---HHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCcEEEEe------CC---HHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCC
Confidence 45677888888888766521 11 3355666677889999998653 45788888888865
No 405
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=21.68 E-value=2.4e+02 Score=30.09 Aligned_cols=95 Identities=12% Similarity=0.015 Sum_probs=60.3
Q ss_pred HHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCC---CCChhHHHHHHHHHhcCCc---eEEEEEeCh
Q 002352 145 IIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISP---LATDDQIEKELYKLFTMQT---RVFILHMLP 218 (932)
Q Consensus 145 ~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~---~~~~~~~~~~l~~l~~~~~---~viil~~~~ 218 (932)
+++.++.+++.+|+....+.. ..+.+.+.|++.|+.+.... ++. +.+.+.+...+..+++.+. ++||-.+.+
T Consensus 56 ~l~~~~~~rvlIVtd~~v~~~-~~~~v~~~L~~~g~~~~~~~-~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGGG 133 (390)
T 3okf_A 56 LLSLSAKQKVVIVTNHTVAPL-YAPAIISLLDHIGCQHALLE-LPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGGG 133 (390)
T ss_dssp GGCCCTTCEEEEEEETTTHHH-HHHHHHHHHHHHTCEEEEEE-ECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEESH
T ss_pred HHHhcCCCEEEEEECCcHHHH-HHHHHHHHHHHcCCeEEEEE-ECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECCc
Confidence 344456789999987665443 67888889998888765322 222 2345667777777777766 677776665
Q ss_pred h--hHHHHHHHHHhCCccccceEEEEec
Q 002352 219 S--LGSRIFEKANEIGLMNKGCVWIMTE 244 (932)
Q Consensus 219 ~--~~~~l~~~a~~~g~~~~~~~wi~t~ 244 (932)
. +...++...+..|+ .++-|-|.
T Consensus 134 sv~D~ak~~Aa~~~rgi---p~I~IPTT 158 (390)
T 3okf_A 134 VIGDLVGFAAACYQRGV---DFIQIPTT 158 (390)
T ss_dssp HHHHHHHHHHHHBTTCC---EEEEEECS
T ss_pred HHhhHHHHHHHHhcCCC---CEEEeCCC
Confidence 4 44555555555553 45555554
No 406
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=21.66 E-value=2.5e+02 Score=24.51 Aligned_cols=58 Identities=10% Similarity=0.145 Sum_probs=38.0
Q ss_pred ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeC--hhhHHHHHHHHHhCC
Q 002352 166 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML--PSLGSRIFEKANEIG 232 (932)
Q Consensus 166 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~l~~~a~~~g 232 (932)
.....+...+.+.|..|... .+ ....+..+.+..+++||+... ..++..++++.++..
T Consensus 25 ~~~~~l~~~L~~~g~~v~~~------~~---~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 84 (153)
T 3hv2_A 25 VILQRLQQLLSPLPYTLHFA------RD---ATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQY 84 (153)
T ss_dssp HHHHHHHHHHTTSSCEEEEE------SS---HHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcccCcEEEEE------CC---HHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHC
Confidence 45677888888888665421 12 334455556678999999754 345677888777743
No 407
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=21.39 E-value=8.1e+02 Score=26.74 Aligned_cols=77 Identities=12% Similarity=0.044 Sum_probs=51.9
Q ss_pred eEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCC-----ChhHHHHHHHHHh-cCCceEEEEEeCh---hhHH
Q 002352 152 REAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLA-----TDDQIEKELYKLF-TMQTRVFILHMLP---SLGS 222 (932)
Q Consensus 152 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-----~~~~~~~~l~~l~-~~~~~viil~~~~---~~~~ 222 (932)
-+|++|..... +...+.+.+.+.|+-+.....+-..+ .+.++...|.-+. +.++++|+++..+ ..+.
T Consensus 113 G~vaivSqSGa----l~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~~~e~~~~ 188 (480)
T 3dmy_A 113 GNIGVIGASGT----GIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRL 188 (480)
T ss_dssp EEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESCCCHHHHH
T ss_pred CCEEEEeccHH----HHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEecCCcHHHH
Confidence 47888886543 45566777888887776655543221 4556777777776 5678999998843 2347
Q ss_pred HHHHHHHhCC
Q 002352 223 RIFEKANEIG 232 (932)
Q Consensus 223 ~l~~~a~~~g 232 (932)
+++++|++.+
T Consensus 189 ~f~~~ar~~~ 198 (480)
T 3dmy_A 189 KIVNAMKATG 198 (480)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhCC
Confidence 8888887643
No 408
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=21.26 E-value=2.8e+02 Score=22.89 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeC--hhhHHHHHHHHHhC
Q 002352 166 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML--PSLGSRIFEKANEI 231 (932)
Q Consensus 166 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~l~~~a~~~ 231 (932)
.....+...+.+.|..+... .+ ....+..+.+.++|++++... ..++..++++.++.
T Consensus 13 ~~~~~l~~~L~~~g~~v~~~------~~---~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~ 71 (120)
T 3f6p_A 13 PIADILEFNLRKEGYEVHCA------HD---GNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKK 71 (120)
T ss_dssp HHHHHHHHHHHHTTCEEEEE------SS---HHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCEEEEEe------CC---HHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 45667778888888766421 12 234555666788999999854 44677888887763
No 409
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=21.26 E-value=2.1e+02 Score=26.26 Aligned_cols=85 Identities=13% Similarity=0.056 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeC
Q 002352 138 QVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML 217 (932)
Q Consensus 138 ~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 217 (932)
.++.+..+.++++-+++.++- |......+.+.+.+...-.|+.+... +-++....+.+-+..+.+++++.-+
T Consensus 14 HGQV~t~W~k~~~~~~IiVvn-D~vA~D~~~k~~lk~a~P~gvk~~i~-------sve~ai~~~~~~~~~~~~v~ll~k~ 85 (164)
T 1nrz_A 14 HGQVTTVWSKVANAQRIIICN-DDVFNDEVRRTLLRQAAPPGMKVNVV-------SLEKAVAVYHNPQYQDETVFYLFTN 85 (164)
T ss_dssp CHHHHHHHHHHHTCSEEEEEC-HHHHTCHHHHHHHHHTCCTTCEEEEE-------CHHHHHHHHTCGGGTTCEEEEEESS
T ss_pred chhheeeeccccCCCEEEEeC-ccccCCHHHHHHHHhcCCCCCeEEEE-------EHHHHHHHHhcccCCCceEEEEECC
Confidence 478888999999999988876 33333445666666665567776543 2334445555444577899999999
Q ss_pred hhhHHHHHHHHHhCCcc
Q 002352 218 PSLGSRIFEKANEIGLM 234 (932)
Q Consensus 218 ~~~~~~l~~~a~~~g~~ 234 (932)
+.++.+++ +.|..
T Consensus 86 p~d~~~lv----e~Gv~ 98 (164)
T 1nrz_A 86 PHDVLTMV----RQGVQ 98 (164)
T ss_dssp HHHHHHHH----TTTCC
T ss_pred HHHHHHHH----HcCCC
Confidence 99998775 45654
No 410
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=20.73 E-value=1.4e+02 Score=30.02 Aligned_cols=50 Identities=6% Similarity=0.058 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCcccEEEeeeeeeccccccccccccccccCeEEEEEccCC
Q 002352 505 YNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDN 554 (932)
Q Consensus 505 ~~~li~~l~~g~~D~~~~~~~it~~R~~~vdfs~p~~~~~~~~lv~~~~~ 554 (932)
-.+.+.++.+|.+|++..+-.+..+..+.---..|+...++++++++...
T Consensus 74 Sg~g~~~~~~G~~di~~as~~~~~~e~~~~~~~~~ia~d~~~vivn~~n~ 123 (279)
T 4gd5_A 74 SSAGIKNAMEGVSEIGMASRDLKGEEKQAGLKEVEIAYDGIALITHKNNP 123 (279)
T ss_dssp HHHHHHHHHHTSSSEEEESSCCCHHHHTTCCEEEEEEEEEEEEEEETTCS
T ss_pred cHHHHHHHHcCCCcEEEecchhhhhHhhcCceEEEEEeeceeeeeccCCc
Confidence 45788999999999998776665543332223467888899999986643
No 411
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=20.70 E-value=1.1e+02 Score=30.67 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=27.5
Q ss_pred HHHHHHHHHHCCCcccEEEEeccCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 002352 473 IAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGD 523 (932)
Q Consensus 473 ~dl~~~la~~l~f~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~~~ 523 (932)
..++..+.+.+||++++. ..+ + .-+...|.+|++|+.+..
T Consensus 181 ~~v~~~~Le~~Gy~Ve~~--~~~--------~-~~~~~al~~G~iD~~~e~ 220 (268)
T 2b4l_A 181 TNVIGKVLEDLGYEVTLT--QVE--------A-GPMWTAIATGSADASLSA 220 (268)
T ss_dssp HHHHHHHHHHHTCEEEEE--ECC--------T-THHHHHHHHTSSSEEEEE
T ss_pred HHHHHHHHHHcCCceEEE--ECC--------h-HHHHHHHHCCCCeEEehh
Confidence 345666667889765554 333 2 466788999999998654
No 412
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=20.39 E-value=3.8e+02 Score=28.47 Aligned_cols=94 Identities=14% Similarity=-0.001 Sum_probs=59.7
Q ss_pred HHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhC------CceeeeeeecCC---CCChhHHHHHHHHHhcCC--c---eE
Q 002352 146 IKAFGWREAVPIYVDNQYGEEMIPSLTDALQAI------DTRVPYRSVISP---LATDDQIEKELYKLFTMQ--T---RV 211 (932)
Q Consensus 146 l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~------g~~v~~~~~~~~---~~~~~~~~~~l~~l~~~~--~---~v 211 (932)
++.++.+++.+|+....... ..+.+.+.|++. |..+.. ..++. +.+.+.+......+++.+ . ++
T Consensus 31 ~~~~~~~k~liVtd~~v~~~-~~~~v~~~L~~~~~~~~~g~~~~~-~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~ 108 (393)
T 1sg6_A 31 ISDCSSTTYVLVTDTNIGSI-YTPSFEEAFRKRAAEITPSPRLLI-YNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTV 108 (393)
T ss_dssp HHHSCCSEEEEEEEHHHHHH-HHHHHHHHHHHHHHHSSSCCEEEE-EEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCE
T ss_pred HHhcCCCeEEEEECCcHHHH-HHHHHHHHHHhhhccccCCceeEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCE
Confidence 46677889999986543322 566777777766 666542 23333 234566777777887777 7 88
Q ss_pred EEEEeChh--hHHHHHHHHHhCCccccceEEEEec
Q 002352 212 FILHMLPS--LGSRIFEKANEIGLMNKGCVWIMTE 244 (932)
Q Consensus 212 iil~~~~~--~~~~l~~~a~~~g~~~~~~~wi~t~ 244 (932)
||-.+.+. ++..+.......|+ .++-|-|.
T Consensus 109 iIalGGGsv~D~ak~~Aa~~~rgi---p~i~IPTT 140 (393)
T 1sg6_A 109 VIALGGGVIGDLTGFVASTYMRGV---RYVQVPTT 140 (393)
T ss_dssp EEEEESHHHHHHHHHHHHHGGGCC---EEEEEECS
T ss_pred EEEECCcHHHHHHHHHHHHhcCCC---CEEEECCc
Confidence 88776654 55666666565554 45556554
No 413
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=20.32 E-value=2.9e+02 Score=22.98 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=37.4
Q ss_pred ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeC--hhhHHHHHHHHHhCC
Q 002352 166 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML--PSLGSRIFEKANEIG 232 (932)
Q Consensus 166 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~l~~~a~~~g 232 (932)
.....+...+.+.|..+... .+ ....+..+.+..+|++++... ...+..++++.++.+
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~------~~---~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (130)
T 3eod_A 18 VFRSLLDSWFSSLGATTVLA------AD---GVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRG 77 (130)
T ss_dssp HHHHHHHHHHHHTTCEEEEE------SC---HHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCceEEEe------CC---HHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 34677788888888765431 12 334556667788999999754 334577788877755
No 414
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=20.30 E-value=1.8e+02 Score=30.76 Aligned_cols=82 Identities=7% Similarity=-0.076 Sum_probs=53.5
Q ss_pred HHHHHHHcCC---eEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCC---ceEEEEE
Q 002352 142 ITAIIKAFGW---REAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ---TRVFILH 215 (932)
Q Consensus 142 i~~~l~~~~w---~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~---~~viil~ 215 (932)
+.++++.++. +++.+|+...-... .+.+.+++.|+.+..-..+..+++.+.+.+.+..+++.+ +|+||-.
T Consensus 41 l~~~l~~~g~~~~~~~liVtd~~~~~~----~l~~~L~~~g~~~~~f~~v~~~pt~~~v~~~~~~~~~~~~~~~D~IIav 116 (375)
T 3rf7_A 41 LDTVLEQERTDANDFVVFLVDDVHQHK----PLAARVPNKAHDLVIYVNVDDEPTTVQVDELTAQVKAFNTKLPVSVVGL 116 (375)
T ss_dssp HHHHHHTTCCSTTCCEEEEEEGGGTTS----HHHHHSCCCTTSEEEEECCSSCCBHHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred HHHHHHHhcccCCCeEEEEECchhhhh----HHHHHHHhcCCeEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCCEEEEe
Confidence 6677777763 77878875433222 466777777776644334555667777877777777766 9999888
Q ss_pred eChh--hHHHHHHH
Q 002352 216 MLPS--LGSRIFEK 227 (932)
Q Consensus 216 ~~~~--~~~~l~~~ 227 (932)
+.+. ++..++..
T Consensus 117 GGGS~iD~AK~iA~ 130 (375)
T 3rf7_A 117 GGGSTMDLAKAVSL 130 (375)
T ss_dssp ESHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 7765 34444443
No 415
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=20.27 E-value=1.2e+02 Score=30.32 Aligned_cols=81 Identities=12% Similarity=0.037 Sum_probs=50.4
Q ss_pred eEEEEEEEc--CCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeChh-hHHHHHHHH
Q 002352 152 REAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS-LGSRIFEKA 228 (932)
Q Consensus 152 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~-~~~~l~~~a 228 (932)
+.|+++..+ ++|...+...+.+++++.|..+..... ....+...-...+..+...+.|.||+..... .....++++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFAS-PSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARA 80 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEEC-SSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 367777753 556666778888888888977654321 0112233334566777778899988865432 223456777
Q ss_pred HhCCc
Q 002352 229 NEIGL 233 (932)
Q Consensus 229 ~~~g~ 233 (932)
.+.|+
T Consensus 81 ~~~~i 85 (288)
T 1gud_A 81 WKKGI 85 (288)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77665
No 416
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=20.24 E-value=6.9e+02 Score=25.38 Aligned_cols=135 Identities=8% Similarity=0.045 Sum_probs=73.3
Q ss_pred EEEEEEEeCCCccchhHHHHHHHHHHHHhcCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcC-CeEEEEccCChhHHH
Q 002352 19 VNVGLVLDMNGEDGKIALSCINMSLSDFYNSNSHYKTRLLLNTRNSKGDVVAAAAAALDLLNNV-LVQAILGPEKSMQTN 97 (932)
Q Consensus 19 i~IG~i~~~s~~~g~~~~~a~~lAv~~iN~~~~~~g~~l~~~~~D~~~~~~~a~~~a~~li~~~-~v~aiiGp~~s~~a~ 97 (932)
-.|+.+|..++ .+-+.+++.|+.++. |..+.+...+++-.-.+.+.-..+.++.- .+.++=++ ......
T Consensus 40 k~l~~lF~e~S---TRTR~SFe~A~~~LG------g~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~-~~~~~~ 109 (307)
T 2i6u_A 40 RGVAVIFDKNS---TRTRFSFELGIAQLG------GHAVVVDSGSTQLGRDETLQDTAKVLSRYVDAIVWRTF-GQERLD 109 (307)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHTT------CEEEEEEGGGSGGGGTCCHHHHHHHHHHHEEEEEEECS-SHHHHH
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHcC------CeEEEECCccccCCCCCCHHHHHHHHHHhCCEEEEecC-ChhHHH
Confidence 35788886655 345788999988873 23344443333211111122222222221 23333343 333333
Q ss_pred HHHHhcCCCCccEEecccCCCCccCCCCCceEecccCchhHHHHHHHHH---HHcC-C--eEEEEEEEcCCcCCChHHHH
Q 002352 98 FIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAII---KAFG-W--REAVPIYVDNQYGEEMIPSL 171 (932)
Q Consensus 98 ~v~~~~~~~~iP~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~~~-w--~~v~ii~~d~~~g~~~~~~l 171 (932)
.+++..++|+|.-. ++..+| .+++++++ +++| . .+|+++- |.. ......+
T Consensus 110 ---~lA~~~~vPVINa~------~~~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vG--D~~-~rva~Sl 165 (307)
T 2i6u_A 110 ---AMASVATVPVINAL------SDEFHP------------CQVLADLQTIAERKGALRGLRLSYFG--DGA-NNMAHSL 165 (307)
T ss_dssp ---HHHHHCSSCEEESC------CSSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES--CTT-SHHHHHH
T ss_pred ---HHHhhCCCCEEcCC------CCCcCc------------cHHHHHHHHHHHHhCCcCCeEEEEEC--CCC-cCcHHHH
Confidence 34455579999832 122233 67778775 4455 2 4555543 322 4678899
Q ss_pred HHHHHhCCceeeeeee
Q 002352 172 TDALQAIDTRVPYRSV 187 (932)
Q Consensus 172 ~~~l~~~g~~v~~~~~ 187 (932)
..++...|.++.....
T Consensus 166 ~~~~~~~g~~v~~~~P 181 (307)
T 2i6u_A 166 LLGGVTAGIHVTVAAP 181 (307)
T ss_dssp HHHHHHTTCEEEEECC
T ss_pred HHHHHHCCCEEEEECC
Confidence 9999999988876543
No 417
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=20.24 E-value=1.8e+02 Score=26.66 Aligned_cols=85 Identities=13% Similarity=0.067 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEcCCcCCChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeC
Q 002352 138 QVGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML 217 (932)
Q Consensus 138 ~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 217 (932)
.++.+..+.++++-+++.++- |......+.+.+.+...-.|+.+... +-++....+.+-+..+.+++++.-+
T Consensus 17 HGQV~t~W~~~~~~~~IiVvn-D~vA~D~~~k~~lk~a~P~gvk~~i~-------sve~ai~~~~~~~~~~~~v~ll~k~ 88 (165)
T 1vsq_C 17 HGQVATRWTKETNVSRIIVVS-DEVAADTVRKTLLTQVAPPGVTAHVV-------DVAKMIRVYNNPKYAGERVMLLFTN 88 (165)
T ss_dssp CTTHHHHHHHHTTCSEEEEEC-HHHHTCHHHHHHHHHTCCTTCEEEEE-------CHHHHHHHHTCGGGTTCEEEEEESS
T ss_pred chheeeeeccccCCCEEEEeC-ccccCCHHHHHHHHhcCCCCCeEEEE-------EHHHHHHHHhccccCCcEEEEEECC
Confidence 367788999999999988875 33333445666666665567776543 2334444555444577899999999
Q ss_pred hhhHHHHHHHHHhCCcc
Q 002352 218 PSLGSRIFEKANEIGLM 234 (932)
Q Consensus 218 ~~~~~~l~~~a~~~g~~ 234 (932)
+.++.+++ +.|..
T Consensus 89 p~d~~~lv----e~Gv~ 101 (165)
T 1vsq_C 89 PTDVERLV----EGGVK 101 (165)
T ss_dssp HHHHHHHH----HTTCC
T ss_pred HHHHHHHH----HcCCC
Confidence 99998875 45553
No 418
>1q9u_A Uncharacterized protein APC35924; structural genomics, Zn-binding proteins, PSI, protein structure initiative; HET: CSW CME; 1.80A {Geobacillus stearothermophilus} SCOP: d.129.7.1
Probab=20.08 E-value=4e+02 Score=22.87 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=51.2
Q ss_pred CChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHh-cC-CceEEEEEeChhhHHHHHHHHHhCCccccceEEEE
Q 002352 165 EEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLF-TM-QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242 (932)
Q Consensus 165 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~-~~-~~~viil~~~~~~~~~l~~~a~~~g~~~~~~~wi~ 242 (932)
.+..+.+++++++.|..|..... ....+++-- +. .+-.++..|++..+..+++.-.+.|+..|-.+.+.
T Consensus 16 ~e~~~~l~~al~~~Gf~v~~~~d---------~~~~~~~~G~~~~~~~~il~~cnp~~a~~~l~~~p~~g~~lPcrv~v~ 86 (130)
T 1q9u_A 16 NETIERLEESLKQEGFGVLWQFS---------VTEKLQEKGLDFSTPMVILEVCNPQEAARVLNENLLVGYFLPCKLVVY 86 (130)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEE---------HHHHHHHTTCCCCSCEEEEEEECHHHHHHHHHHCGGGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEEC---------HHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHhCHHHHhhcCeEEEEE
Confidence 44578899999999999876533 333343321 23 55678889999999999999999998888666655
Q ss_pred e
Q 002352 243 T 243 (932)
Q Consensus 243 t 243 (932)
.
T Consensus 87 e 87 (130)
T 1q9u_A 87 Q 87 (130)
T ss_dssp E
T ss_pred E
Confidence 4
No 419
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=20.02 E-value=3.3e+02 Score=22.69 Aligned_cols=57 Identities=14% Similarity=-0.005 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHhCCceeeeeeecCCCCChhHHHHHHHHHhcCCceEEEEEeC--hhhHHHHHHHHHhCC
Q 002352 166 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML--PSLGSRIFEKANEIG 232 (932)
Q Consensus 166 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~--~~~~~~l~~~a~~~g 232 (932)
.....+...++ .|..+... .+ ....+..+.+..+++|++... ..++..++++.++.+
T Consensus 15 ~~~~~l~~~l~-~~~~v~~~------~~---~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 73 (133)
T 3nhm_A 15 TMRETLRLLLS-GEFDCTTA------AD---GASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEP 73 (133)
T ss_dssp HHHHHHHHHHT-TTSEEEEE------SS---HHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHh-CCcEEEEE------CC---HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 34566666776 66665421 12 334455566688999999754 446788888888864
Done!