Query 002353
Match_columns 932
No_of_seqs 542 out of 3316
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 22:07:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002353.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002353hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0477 DNA replication licens 100.0 4E-190 8E-195 1575.8 47.4 818 49-929 37-854 (854)
2 KOG0480 DNA replication licens 100.0 2E-123 4E-128 1047.2 48.1 678 207-926 21-737 (764)
3 COG1241 MCM2 Predicted ATPase 100.0 2E-119 4E-124 1058.3 57.3 591 211-825 3-598 (682)
4 PTZ00111 DNA replication licen 100.0 8E-113 2E-117 1020.4 64.7 621 206-826 83-811 (915)
5 KOG0481 DNA replication licens 100.0 3E-112 6E-117 933.3 49.9 600 208-828 25-648 (729)
6 KOG0478 DNA replication licens 100.0 2E-112 3E-117 965.6 39.3 602 196-825 119-730 (804)
7 KOG0479 DNA replication licens 100.0 1E-110 3E-115 931.1 52.3 612 205-825 7-648 (818)
8 KOG0482 DNA replication licens 100.0 6E-111 1E-115 922.1 35.5 611 212-862 14-670 (721)
9 smart00350 MCM minichromosome 100.0 2.7E-94 5.8E-99 847.0 51.7 495 310-824 2-509 (509)
10 PF00493 MCM: MCM2/3/5 family 100.0 3.1E-72 6.6E-77 626.9 10.2 329 479-823 1-330 (331)
11 COG3829 RocR Transcriptional r 99.9 1.8E-25 3.9E-30 253.9 13.3 285 533-900 266-560 (560)
12 TIGR02442 Cob-chelat-sub cobal 99.9 5.6E-24 1.2E-28 257.0 22.6 266 502-822 4-307 (633)
13 TIGR00368 Mg chelatase-related 99.9 4.2E-24 9E-29 249.7 19.6 267 503-818 193-498 (499)
14 COG2204 AtoC Response regulato 99.9 5.4E-25 1.2E-29 250.9 9.1 288 534-900 163-457 (464)
15 TIGR02031 BchD-ChlD magnesium 99.9 2E-23 4.4E-28 249.6 22.8 255 509-822 2-261 (589)
16 PRK09862 putative ATP-dependen 99.9 1.5E-23 3.2E-28 244.0 19.5 255 503-819 192-492 (506)
17 PF12619 MCM2_N: Mini-chromoso 99.9 8.3E-25 1.8E-29 216.4 6.5 122 48-177 24-152 (156)
18 TIGR02030 BchI-ChlI magnesium 99.9 1.1E-22 2.4E-27 227.1 21.8 266 502-822 4-312 (337)
19 COG3604 FhlA Transcriptional r 99.9 6.9E-24 1.5E-28 237.9 10.2 292 534-900 245-546 (550)
20 PRK13407 bchI magnesium chelat 99.9 7.8E-22 1.7E-26 219.9 24.0 263 503-821 9-308 (334)
21 COG0606 Predicted ATPase with 99.9 1.8E-22 3.8E-27 227.1 16.0 256 503-818 180-484 (490)
22 CHL00081 chlI Mg-protoporyphyr 99.9 9.8E-22 2.1E-26 219.5 21.6 265 503-822 18-325 (350)
23 PF01078 Mg_chelatase: Magnesi 99.9 1.7E-22 3.6E-27 208.7 11.6 159 502-682 3-199 (206)
24 PRK13531 regulatory ATPase Rav 99.9 2E-19 4.4E-24 206.1 29.2 311 492-869 10-328 (498)
25 PRK13406 bchD magnesium chelat 99.8 8.9E-19 1.9E-23 208.1 19.2 241 507-823 8-254 (584)
26 COG1239 ChlI Mg-chelatase subu 99.8 2.4E-18 5.3E-23 191.7 20.1 255 500-820 15-323 (423)
27 PRK11608 pspF phage shock prot 99.8 1.4E-18 3.1E-23 194.6 16.2 286 537-899 31-325 (326)
28 TIGR02974 phageshock_pspF psp 99.8 1.1E-18 2.4E-23 195.6 15.0 293 536-897 23-329 (329)
29 PRK05022 anaerobic nitric oxid 99.8 5.7E-19 1.2E-23 209.1 10.9 287 536-901 211-509 (509)
30 TIGR00764 lon_rel lon-related 99.8 2.2E-17 4.8E-22 198.2 22.5 171 590-821 208-393 (608)
31 COG0714 MoxR-like ATPases [Gen 99.8 2.9E-17 6.4E-22 184.5 22.1 278 492-822 14-299 (329)
32 PRK10923 glnG nitrogen regulat 99.7 9.6E-18 2.1E-22 197.0 14.6 296 534-900 160-469 (469)
33 COG3283 TyrR Transcriptional r 99.7 4.9E-18 1.1E-22 183.2 10.8 208 537-814 229-444 (511)
34 PRK11388 DNA-binding transcrip 99.7 3.5E-18 7.5E-23 208.1 10.7 274 536-899 349-630 (638)
35 TIGR01817 nifA Nif-specific re 99.7 1.4E-17 3E-22 198.7 14.1 293 535-899 219-529 (534)
36 COG1221 PspF Transcriptional r 99.7 2.6E-17 5.7E-22 185.3 15.3 288 537-902 103-401 (403)
37 PRK15424 propionate catabolism 99.7 5.5E-18 1.2E-22 199.6 10.0 279 536-900 243-537 (538)
38 TIGR02329 propionate_PrpR prop 99.7 3.3E-17 7.2E-22 193.2 16.1 282 536-896 236-526 (526)
39 PRK15115 response regulator Gl 99.7 1.5E-17 3.2E-22 194.1 12.3 274 535-901 157-439 (444)
40 TIGR02915 PEP_resp_reg putativ 99.7 2.1E-17 4.7E-22 192.8 13.4 274 536-900 163-445 (445)
41 PRK10820 DNA-binding transcrip 99.7 4.7E-17 1E-21 193.0 16.4 276 537-900 229-513 (520)
42 PRK11361 acetoacetate metaboli 99.7 2.8E-17 6E-22 192.4 13.5 283 536-900 167-457 (457)
43 PF14551 MCM_N: MCM N-terminal 99.7 5.9E-18 1.3E-22 162.1 6.3 113 211-329 1-121 (121)
44 TIGR02902 spore_lonB ATP-depen 99.7 3.2E-16 6.9E-21 186.1 20.5 223 503-817 66-330 (531)
45 TIGR02640 gas_vesic_GvpN gas v 99.7 2E-15 4.3E-20 164.4 18.8 209 537-816 23-254 (262)
46 PRK15429 formate hydrogenlyase 99.7 1.5E-16 3.2E-21 195.2 10.7 275 536-900 400-684 (686)
47 TIGR01818 ntrC nitrogen regula 99.7 4.8E-16 1.1E-20 182.3 13.4 292 535-897 157-463 (463)
48 PF05496 RuvB_N: Holliday junc 99.6 1E-15 2.2E-20 159.6 13.6 200 501-798 23-228 (233)
49 PF07726 AAA_3: ATPase family 99.6 2.9E-16 6.2E-21 150.2 8.6 128 537-677 1-130 (131)
50 COG3284 AcoR Transcriptional a 99.6 2E-16 4.4E-21 183.5 5.4 264 532-900 333-605 (606)
51 TIGR01650 PD_CobS cobaltochela 99.6 4.4E-14 9.5E-19 156.1 22.9 157 537-695 66-229 (327)
52 PRK13765 ATP-dependent proteas 99.6 1.3E-14 2.8E-19 173.9 20.2 169 587-817 213-398 (637)
53 PRK10365 transcriptional regul 99.6 4.1E-15 8.8E-20 173.3 9.8 269 537-896 164-441 (441)
54 COG2255 RuvB Holliday junction 99.5 1.8E-13 3.9E-18 145.2 18.6 218 503-819 27-251 (332)
55 PF07728 AAA_5: AAA domain (dy 99.5 1.3E-14 2.7E-19 142.4 8.8 129 537-676 1-139 (139)
56 TIGR02880 cbbX_cfxQ probable R 99.5 1E-13 2.2E-18 152.7 14.1 227 497-804 17-258 (284)
57 CHL00181 cbbX CbbX; Provisiona 99.5 1.2E-13 2.7E-18 152.1 14.6 228 493-802 14-257 (287)
58 PRK05342 clpX ATP-dependent pr 99.5 1.5E-13 3.3E-18 157.9 15.3 158 496-653 65-241 (412)
59 TIGR00635 ruvB Holliday juncti 99.5 1.6E-12 3.4E-17 144.5 19.2 219 503-818 5-228 (305)
60 PRK00080 ruvB Holliday junctio 99.5 1.4E-12 2.9E-17 146.7 18.3 219 503-819 26-250 (328)
61 COG2256 MGS1 ATPase related to 99.4 2.2E-12 4.7E-17 143.0 17.1 222 537-860 50-276 (436)
62 TIGR00382 clpX endopeptidase C 99.4 2.3E-12 5E-17 147.5 17.0 157 494-651 69-247 (413)
63 PF00158 Sigma54_activat: Sigm 99.4 1.9E-13 4E-18 139.1 5.7 134 536-677 23-163 (168)
64 COG0466 Lon ATP-dependent Lon 99.4 1.9E-12 4.2E-17 151.6 14.2 159 500-681 321-492 (782)
65 KOG0734 AAA+-type ATPase conta 99.4 1.1E-12 2.4E-17 148.1 11.2 215 477-819 313-541 (752)
66 TIGR02881 spore_V_K stage V sp 99.4 5.5E-12 1.2E-16 137.3 16.5 221 503-802 7-241 (261)
67 TIGR02903 spore_lon_C ATP-depe 99.3 2.2E-11 4.7E-16 147.2 19.5 158 500-681 152-350 (615)
68 PHA02244 ATPase-like protein 99.3 3E-12 6.6E-17 143.0 11.1 140 537-687 121-262 (383)
69 COG1222 RPT1 ATP-dependent 26S 99.3 1.3E-11 2.9E-16 134.8 14.7 192 537-821 187-394 (406)
70 PRK10787 DNA-binding ATP-depen 99.3 2.9E-11 6.2E-16 149.3 18.4 158 498-680 318-489 (784)
71 CHL00195 ycf46 Ycf46; Provisio 99.3 4.3E-11 9.4E-16 140.3 16.6 217 503-821 229-465 (489)
72 PRK13342 recombination factor 99.3 1E-10 2.3E-15 135.6 19.1 181 537-819 38-219 (413)
73 KOG2028 ATPase related to the 99.3 4.8E-11 1E-15 129.9 14.6 159 475-681 114-278 (554)
74 KOG2004 Mitochondrial ATP-depe 99.3 1.8E-11 4E-16 142.6 11.7 168 500-694 409-589 (906)
75 PRK13341 recombination factor 99.2 1.4E-10 3.1E-15 141.7 18.1 185 537-817 54-245 (725)
76 PRK03992 proteasome-activating 99.2 8.3E-11 1.8E-15 135.2 15.2 194 536-822 166-375 (389)
77 PRK11034 clpA ATP-dependent Cl 99.2 1.1E-10 2.3E-15 143.4 16.1 183 491-683 447-651 (758)
78 TIGR00763 lon ATP-dependent pr 99.2 1E-10 2.2E-15 145.5 15.9 173 496-695 314-501 (775)
79 COG0465 HflB ATP-dependent Zn 99.2 7E-11 1.5E-15 139.2 13.3 191 537-821 185-392 (596)
80 KOG0738 AAA+-type ATPase [Post 99.2 3.9E-11 8.4E-16 131.9 9.6 165 503-700 213-396 (491)
81 PRK14949 DNA polymerase III su 99.2 6.6E-10 1.4E-14 135.5 20.7 205 503-814 17-239 (944)
82 COG1223 Predicted ATPase (AAA+ 99.2 1.1E-10 2.5E-15 122.3 11.9 150 498-681 117-280 (368)
83 CHL00176 ftsH cell division pr 99.2 3.4E-10 7.4E-15 136.7 17.8 224 503-821 184-425 (638)
84 PRK07003 DNA polymerase III su 99.2 7.6E-10 1.7E-14 132.7 20.3 209 503-817 17-242 (830)
85 TIGR02639 ClpA ATP-dependent C 99.2 2.5E-10 5.4E-15 141.3 15.8 194 493-697 445-660 (731)
86 KOG0736 Peroxisome assembly fa 99.2 6.5E-10 1.4E-14 130.8 18.1 166 504-698 674-856 (953)
87 TIGR01241 FtsH_fam ATP-depende 99.2 3.1E-10 6.7E-15 134.6 15.4 189 537-821 90-297 (495)
88 PRK14962 DNA polymerase III su 99.2 1.7E-09 3.7E-14 126.8 21.4 211 502-819 14-242 (472)
89 PLN03025 replication factor C 99.2 2E-09 4.3E-14 120.8 20.6 133 503-677 14-151 (319)
90 PTZ00454 26S protease regulato 99.1 5.3E-10 1.1E-14 128.5 16.1 192 537-821 181-388 (398)
91 PRK14956 DNA polymerase III su 99.1 2.3E-09 4.9E-14 124.4 21.2 210 502-818 18-245 (484)
92 PRK14961 DNA polymerase III su 99.1 2.1E-09 4.5E-14 122.7 20.8 208 503-817 17-242 (363)
93 TIGR01242 26Sp45 26S proteasom 99.1 4.5E-10 9.6E-15 128.2 15.2 190 537-819 158-363 (364)
94 KOG0737 AAA+-type ATPase [Post 99.1 5.6E-11 1.2E-15 130.7 7.2 172 503-701 93-276 (386)
95 KOG0731 AAA+-type ATPase conta 99.1 2.8E-10 6.1E-15 136.3 13.6 220 477-823 320-557 (774)
96 TIGR03346 chaperone_ClpB ATP-d 99.1 1.1E-09 2.3E-14 137.6 18.8 238 494-795 557-821 (852)
97 PRK12323 DNA polymerase III su 99.1 9.6E-10 2.1E-14 130.4 16.9 138 503-678 17-177 (700)
98 TIGR02639 ClpA ATP-dependent C 99.1 1.6E-09 3.5E-14 134.1 19.0 198 502-769 182-403 (731)
99 PTZ00361 26 proteosome regulat 99.1 1E-09 2.2E-14 127.1 14.6 193 536-821 218-426 (438)
100 PRK14958 DNA polymerase III su 99.1 4E-09 8.7E-14 124.9 19.8 283 503-908 17-328 (509)
101 PRK14960 DNA polymerase III su 99.0 9.4E-09 2E-13 122.4 21.0 208 503-817 16-241 (702)
102 PRK14957 DNA polymerase III su 99.0 7.9E-09 1.7E-13 122.6 20.1 209 503-818 17-243 (546)
103 TIGR03345 VI_ClpV1 type VI sec 99.0 3.5E-09 7.7E-14 132.3 18.0 252 493-807 557-840 (852)
104 PRK06645 DNA polymerase III su 99.0 1.4E-08 2.9E-13 119.9 21.2 216 503-821 22-258 (507)
105 PF07724 AAA_2: AAA domain (Cd 99.0 3.4E-10 7.5E-15 115.6 6.9 139 536-679 4-171 (171)
106 PRK08691 DNA polymerase III su 99.0 8.7E-09 1.9E-13 123.6 19.6 212 503-820 17-245 (709)
107 CHL00095 clpC Clp protease ATP 99.0 6.4E-09 1.4E-13 130.3 19.4 181 493-683 500-717 (821)
108 TIGR03420 DnaA_homol_Hda DnaA 99.0 4.8E-09 1E-13 111.2 15.7 180 537-816 40-225 (226)
109 KOG0730 AAA+-type ATPase [Post 99.0 2.6E-09 5.6E-14 124.8 14.6 169 503-707 435-619 (693)
110 PRK05201 hslU ATP-dependent pr 99.0 7.7E-09 1.7E-13 117.6 17.6 148 599-802 249-409 (443)
111 TIGR00390 hslU ATP-dependent p 99.0 1.1E-08 2.3E-13 116.4 18.7 150 598-803 246-408 (441)
112 PRK07994 DNA polymerase III su 99.0 1.9E-08 4.1E-13 121.1 21.4 203 503-816 17-241 (647)
113 CHL00206 ycf2 Ycf2; Provisiona 99.0 2.9E-09 6.2E-14 136.1 14.7 201 536-819 1631-1877(2281)
114 COG1219 ClpX ATP-dependent pro 99.0 3E-09 6.5E-14 114.8 11.8 155 495-652 54-229 (408)
115 PRK10865 protein disaggregatio 99.0 1.2E-08 2.5E-13 128.1 19.0 176 493-683 559-764 (857)
116 COG0542 clpA ATP-binding subun 99.0 8.2E-09 1.8E-13 124.8 16.7 177 492-682 481-689 (786)
117 COG0464 SpoVK ATPases of the A 99.0 2.9E-09 6.2E-14 126.5 12.6 203 533-822 274-486 (494)
118 smart00763 AAA_PrkA PrkA AAA d 98.9 4.5E-09 9.8E-14 117.8 12.4 100 592-700 229-328 (361)
119 cd00009 AAA The AAA+ (ATPases 98.9 2.8E-09 6.1E-14 102.8 9.2 145 506-682 2-149 (151)
120 TIGR03689 pup_AAA proteasome A 98.9 4.9E-09 1.1E-13 123.2 12.8 138 537-699 218-378 (512)
121 PRK12402 replication factor C 98.9 3.4E-08 7.3E-13 111.1 19.2 205 503-817 16-247 (337)
122 TIGR03345 VI_ClpV1 type VI sec 98.9 1E-08 2.3E-13 128.2 16.3 207 501-773 186-412 (852)
123 PRK07764 DNA polymerase III su 98.9 3.4E-08 7.5E-13 122.4 20.4 140 503-681 16-176 (824)
124 TIGR01243 CDC48 AAA family ATP 98.9 5.3E-09 1.1E-13 129.8 13.1 159 503-694 454-630 (733)
125 PF00004 AAA: ATPase family as 98.9 1.4E-09 3.1E-14 104.5 6.4 118 538-682 1-130 (132)
126 PRK08903 DnaA regulatory inact 98.9 3.7E-08 8.1E-13 104.9 17.7 178 537-816 44-223 (227)
127 PRK14952 DNA polymerase III su 98.9 3.6E-08 7.8E-13 118.0 19.3 208 502-816 13-241 (584)
128 PRK14955 DNA polymerase III su 98.9 5.4E-08 1.2E-12 112.5 20.2 211 503-816 17-254 (397)
129 KOG0733 Nuclear AAA ATPase (VC 98.9 3.3E-09 7.2E-14 122.3 9.9 168 504-701 513-694 (802)
130 PRK14951 DNA polymerase III su 98.9 7.3E-08 1.6E-12 115.8 21.8 209 503-818 17-248 (618)
131 PRK14959 DNA polymerase III su 98.9 5.3E-08 1.2E-12 116.4 20.4 208 503-818 17-243 (624)
132 PRK06647 DNA polymerase III su 98.9 7.5E-08 1.6E-12 115.3 21.7 207 503-817 17-242 (563)
133 PRK00440 rfc replication facto 98.9 2.5E-08 5.3E-13 111.2 16.6 200 504-817 19-224 (319)
134 PRK14969 DNA polymerase III su 98.9 7.2E-08 1.6E-12 114.9 21.4 288 503-908 17-330 (527)
135 PRK10733 hflB ATP-dependent me 98.9 1.8E-08 4E-13 122.8 16.2 190 537-820 187-393 (644)
136 PRK14965 DNA polymerase III su 98.9 4.2E-08 9.2E-13 118.2 18.6 206 503-815 17-240 (576)
137 PRK11034 clpA ATP-dependent Cl 98.9 1.1E-08 2.4E-13 125.8 13.8 204 503-772 187-410 (758)
138 PRK08451 DNA polymerase III su 98.9 8.6E-08 1.9E-12 113.4 20.7 205 503-815 15-238 (535)
139 CHL00095 clpC Clp protease ATP 98.9 9.2E-08 2E-12 120.0 21.8 203 502-774 179-404 (821)
140 PRK14963 DNA polymerase III su 98.9 1.8E-07 4E-12 110.7 22.9 140 502-679 14-170 (504)
141 KOG0739 AAA+-type ATPase [Post 98.9 2.8E-09 6.1E-14 113.7 6.4 171 503-708 134-317 (439)
142 KOG0733 Nuclear AAA ATPase (VC 98.8 8.5E-09 1.8E-13 119.0 10.2 145 536-700 224-375 (802)
143 PRK05896 DNA polymerase III su 98.8 1.1E-07 2.4E-12 113.2 19.9 211 500-817 14-242 (605)
144 PRK05563 DNA polymerase III su 98.8 1.2E-07 2.6E-12 113.9 20.3 207 503-816 17-241 (559)
145 PRK14964 DNA polymerase III su 98.8 3.4E-08 7.4E-13 115.8 15.2 206 503-818 14-240 (491)
146 TIGR02928 orc1/cdc6 family rep 98.8 9.3E-08 2E-12 108.9 18.4 236 500-822 13-277 (365)
147 PRK14950 DNA polymerase III su 98.8 8E-08 1.7E-12 116.2 18.3 141 501-679 15-174 (585)
148 TIGR02397 dnaX_nterm DNA polym 98.8 1.8E-07 3.8E-12 106.1 20.1 139 502-677 14-169 (355)
149 KOG0652 26S proteasome regulat 98.8 2.1E-08 4.5E-13 105.3 11.1 122 532-682 202-339 (424)
150 PRK00411 cdc6 cell division co 98.8 1.1E-07 2.3E-12 109.6 18.3 58 755-822 228-285 (394)
151 KOG0989 Replication factor C, 98.8 1.6E-07 3.4E-12 101.6 17.4 136 503-680 37-184 (346)
152 PRK09111 DNA polymerase III su 98.8 1.3E-07 2.8E-12 113.9 18.5 208 503-818 25-256 (598)
153 PRK14948 DNA polymerase III su 98.8 1.9E-07 4.1E-12 113.1 19.9 142 503-681 17-177 (620)
154 COG4650 RtcR Sigma54-dependent 98.8 1.8E-08 3.9E-13 107.3 9.5 120 532-653 205-334 (531)
155 PRK07133 DNA polymerase III su 98.8 4E-07 8.8E-12 110.5 22.2 207 503-816 19-240 (725)
156 PLN00020 ribulose bisphosphate 98.8 1.1E-08 2.4E-13 114.0 7.8 140 535-695 148-307 (413)
157 PRK14953 DNA polymerase III su 98.7 4E-07 8.6E-12 107.5 19.8 207 503-817 17-242 (486)
158 KOG0745 Putative ATP-dependent 98.7 4.9E-08 1.1E-12 109.1 11.2 116 536-651 227-357 (564)
159 PF12775 AAA_7: P-loop contain 98.7 8E-08 1.7E-12 105.4 12.9 149 537-703 35-197 (272)
160 PRK14970 DNA polymerase III su 98.7 9.8E-07 2.1E-11 100.9 22.2 137 503-678 18-161 (367)
161 PRK06305 DNA polymerase III su 98.7 6.5E-07 1.4E-11 104.9 20.9 142 503-681 18-177 (451)
162 PRK14954 DNA polymerase III su 98.7 6.1E-07 1.3E-11 108.3 21.1 211 503-816 17-254 (620)
163 PRK10865 protein disaggregatio 98.7 7.5E-08 1.6E-12 120.9 13.7 201 503-769 179-399 (857)
164 PHA02544 44 clamp loader, smal 98.7 1.6E-06 3.4E-11 97.0 22.1 133 503-681 22-157 (316)
165 PRK04195 replication factor C 98.7 3.6E-07 7.7E-12 108.3 17.1 118 503-652 15-140 (482)
166 TIGR02688 conserved hypothetic 98.7 1.4E-06 3.1E-11 99.2 20.9 135 490-652 173-313 (449)
167 PRK14971 DNA polymerase III su 98.7 3.7E-07 8.1E-12 110.5 17.2 141 503-681 18-177 (614)
168 PTZ00112 origin recognition co 98.7 3.2E-07 6.9E-12 111.0 15.9 233 500-823 753-1010(1164)
169 PRK08084 DNA replication initi 98.7 4.4E-07 9.6E-12 97.5 15.4 179 537-817 47-234 (235)
170 PRK11331 5-methylcytosine-spec 98.7 1.4E-07 3E-12 108.7 12.0 155 503-682 176-356 (459)
171 COG1224 TIP49 DNA helicase TIP 98.6 7.3E-07 1.6E-11 98.0 16.6 142 601-822 293-435 (450)
172 TIGR03346 chaperone_ClpB ATP-d 98.6 2.4E-07 5.2E-12 116.7 14.8 206 503-774 174-399 (852)
173 COG1067 LonB Predicted ATP-dep 98.6 4.5E-07 9.8E-12 109.2 15.5 224 537-818 133-398 (647)
174 PRK06620 hypothetical protein; 98.6 9.9E-07 2.1E-11 93.5 15.4 49 754-816 165-213 (214)
175 COG1220 HslU ATP-dependent pro 98.6 2.8E-07 6E-12 100.5 10.9 69 495-564 8-79 (444)
176 KOG0727 26S proteasome regulat 98.6 3.7E-07 8.1E-12 95.7 11.2 124 537-690 191-330 (408)
177 COG2812 DnaX DNA polymerase II 98.6 1.1E-06 2.3E-11 103.2 16.0 214 500-821 14-246 (515)
178 PRK08727 hypothetical protein; 98.5 2E-06 4.3E-11 92.4 16.4 176 537-816 43-228 (233)
179 KOG0991 Replication factor C, 98.5 1.3E-06 2.8E-11 91.0 14.1 146 494-681 19-169 (333)
180 PRK09087 hypothetical protein; 98.5 1.7E-06 3.7E-11 92.5 15.4 175 537-819 46-222 (226)
181 PRK12422 chromosomal replicati 98.5 6.8E-07 1.5E-11 104.5 13.3 189 537-819 143-343 (445)
182 TIGR01243 CDC48 AAA family ATP 98.5 1.1E-06 2.4E-11 109.3 14.9 126 537-695 214-355 (733)
183 PF14532 Sigma54_activ_2: Sigm 98.5 7.9E-08 1.7E-12 94.6 3.5 110 537-680 23-132 (138)
184 PRK00149 dnaA chromosomal repl 98.5 6E-07 1.3E-11 105.5 11.5 189 537-819 150-349 (450)
185 PRK06893 DNA replication initi 98.5 1.8E-06 3.9E-11 92.5 14.1 178 537-816 41-227 (229)
186 TIGR00362 DnaA chromosomal rep 98.5 9.3E-07 2E-11 102.5 12.5 189 537-818 138-336 (405)
187 COG5271 MDN1 AAA ATPase contai 98.5 4.4E-06 9.5E-11 104.2 18.2 138 537-681 1545-1687(4600)
188 KOG0729 26S proteasome regulat 98.4 4.6E-07 1E-11 95.7 8.3 135 537-705 213-363 (435)
189 KOG0740 AAA+-type ATPase [Post 98.4 1.6E-07 3.4E-12 107.2 5.2 171 502-702 153-336 (428)
190 PF13337 Lon_2: Putative ATP-d 98.4 2.5E-05 5.5E-10 89.7 21.8 147 478-652 160-311 (457)
191 KOG0735 AAA+-type ATPase [Post 98.4 1.1E-06 2.5E-11 103.2 10.1 160 504-698 669-847 (952)
192 PRK14086 dnaA chromosomal repl 98.4 5.3E-06 1.2E-10 99.2 15.3 190 537-819 316-515 (617)
193 PF12774 AAA_6: Hydrolytic ATP 98.3 9.2E-06 2E-10 87.0 15.4 186 537-800 34-228 (231)
194 KOG0726 26S proteasome regulat 98.3 1.2E-06 2.5E-11 93.9 8.4 131 537-703 221-369 (440)
195 COG1474 CDC6 Cdc6-related prot 98.3 7E-06 1.5E-10 93.7 14.7 206 537-822 44-268 (366)
196 KOG0742 AAA+-type ATPase [Post 98.3 1.2E-05 2.7E-10 89.5 15.6 135 537-703 386-532 (630)
197 PRK14087 dnaA chromosomal repl 98.3 3.2E-06 6.9E-11 99.2 11.8 193 537-819 143-348 (450)
198 PRK07940 DNA polymerase III su 98.3 1.2E-06 2.7E-11 100.7 7.9 152 501-680 4-172 (394)
199 PRK05642 DNA replication initi 98.3 2.8E-05 6E-10 83.6 17.4 177 537-816 47-232 (234)
200 COG5271 MDN1 AAA ATPase contai 98.3 9.5E-06 2.1E-10 101.3 14.6 135 535-677 888-1027(4600)
201 smart00382 AAA ATPases associa 98.2 1.5E-06 3.3E-11 82.7 5.8 128 537-682 4-144 (148)
202 PRK04132 replication factor C 98.2 2.3E-05 4.9E-10 97.3 16.5 115 536-681 565-686 (846)
203 TIGR03015 pepcterm_ATPase puta 98.2 2.3E-05 5E-10 85.3 14.8 71 736-819 192-266 (269)
204 KOG0728 26S proteasome regulat 98.2 4.5E-06 9.7E-11 87.7 8.6 134 537-704 183-332 (404)
205 PRK14088 dnaA chromosomal repl 98.2 7.4E-06 1.6E-10 95.9 11.0 51 755-819 282-332 (440)
206 PF00308 Bac_DnaA: Bacterial d 98.2 7E-06 1.5E-10 87.3 9.8 173 537-801 36-218 (219)
207 PHA01747 putative ATP-dependen 98.2 5.7E-06 1.2E-10 91.9 9.0 169 493-678 150-337 (425)
208 PRK09112 DNA polymerase III su 98.1 5E-05 1.1E-09 86.4 15.6 48 502-560 23-70 (351)
209 COG0542 clpA ATP-binding subun 98.1 0.00019 4.2E-09 87.7 21.1 208 500-774 169-396 (786)
210 TIGR02653 Lon_rel_chp conserve 98.1 0.00036 7.7E-09 83.5 22.8 136 489-652 179-319 (675)
211 PRK15455 PrkA family serine pr 98.1 0.00048 1E-08 81.6 22.8 100 592-701 248-348 (644)
212 KOG0651 26S proteasome regulat 98.0 6.2E-06 1.4E-10 89.4 6.1 119 535-682 166-300 (388)
213 KOG1051 Chaperone HSP104 and r 98.0 1.5E-05 3.2E-10 98.4 10.0 152 492-652 552-711 (898)
214 KOG0744 AAA+-type ATPase [Post 98.0 6.5E-05 1.4E-09 82.0 13.4 122 533-682 175-324 (423)
215 COG0470 HolB ATPase involved i 98.0 9.3E-06 2E-10 90.6 7.1 141 504-682 3-166 (325)
216 KOG0743 AAA+-type ATPase [Post 98.0 2.6E-05 5.6E-10 88.9 10.4 137 537-700 237-384 (457)
217 TIGR00678 holB DNA polymerase 97.9 4.8E-05 1E-09 78.7 10.6 54 598-677 95-148 (188)
218 PF13177 DNA_pol3_delta2: DNA 97.9 5.2E-05 1.1E-09 76.9 9.0 139 506-681 1-158 (162)
219 PRK07471 DNA polymerase III su 97.8 4.9E-05 1.1E-09 86.9 9.4 47 502-559 19-65 (365)
220 KOG0730 AAA+-type ATPase [Post 97.8 0.00023 4.9E-09 84.3 14.8 136 532-700 215-365 (693)
221 KOG0741 AAA+-type ATPase [Post 97.7 1.3E-05 2.7E-10 92.0 2.2 132 537-688 258-403 (744)
222 PF05673 DUF815: Protein of un 97.7 0.00056 1.2E-08 73.3 14.1 149 504-682 29-191 (249)
223 KOG0732 AAA+-type ATPase conta 97.7 0.00012 2.5E-09 91.3 10.2 234 537-819 301-590 (1080)
224 PRK08181 transposase; Validate 97.7 9.8E-06 2.1E-10 88.7 0.8 118 537-677 108-231 (269)
225 PRK08058 DNA polymerase III su 97.7 5.2E-05 1.1E-09 85.7 6.7 141 503-681 6-166 (329)
226 KOG1942 DNA helicase, TBP-inte 97.7 0.00036 7.7E-09 75.3 12.3 145 601-823 298-442 (456)
227 PRK05564 DNA polymerase III su 97.7 0.00011 2.4E-09 82.4 8.7 139 502-681 4-149 (313)
228 PF06068 TIP49: TIP49 C-termin 97.7 0.00023 5E-09 79.9 10.5 66 601-681 280-345 (398)
229 COG0593 DnaA ATPase involved i 97.6 0.0013 2.9E-08 75.5 16.9 192 537-822 115-316 (408)
230 PRK12377 putative replication 97.6 1.5E-05 3.3E-10 86.2 0.8 118 537-676 103-222 (248)
231 PRK06526 transposase; Provisio 97.6 2.2E-05 4.8E-10 85.4 1.5 104 537-656 100-205 (254)
232 PF01695 IstB_IS21: IstB-like 97.6 1.1E-05 2.5E-10 83.0 -1.2 118 537-677 49-172 (178)
233 PRK07399 DNA polymerase III su 97.5 0.00034 7.3E-09 78.5 9.1 140 502-681 4-179 (314)
234 TIGR00602 rad24 checkpoint pro 97.4 0.0017 3.7E-08 78.9 14.9 52 503-561 85-136 (637)
235 PRK08116 hypothetical protein; 97.4 4.6E-05 1E-09 83.6 1.2 100 536-653 115-222 (268)
236 PRK09183 transposase/IS protei 97.4 3.2E-05 7E-10 84.4 -0.6 117 537-676 104-228 (259)
237 COG1484 DnaC DNA replication p 97.4 4.6E-05 9.9E-10 83.0 0.3 121 537-677 107-231 (254)
238 KOG1514 Origin recognition com 97.4 0.0093 2E-07 71.5 19.1 237 497-825 391-661 (767)
239 PF00910 RNA_helicase: RNA hel 97.3 0.00024 5.2E-09 66.9 4.9 99 538-650 1-106 (107)
240 KOG2545 Conserved membrane pro 97.3 0.02 4.3E-07 64.7 20.2 322 415-819 203-535 (543)
241 KOG0990 Replication factor C, 97.3 0.00012 2.5E-09 80.2 2.6 133 537-700 64-204 (360)
242 PRK07952 DNA replication prote 97.3 0.00012 2.6E-09 79.1 2.2 112 537-676 101-221 (244)
243 PF13654 AAA_32: AAA domain; P 97.3 0.00059 1.3E-08 81.2 8.1 190 568-818 296-505 (509)
244 PF08298 AAA_PrkA: PrkA AAA do 97.3 0.00054 1.2E-08 76.9 7.1 100 592-700 226-325 (358)
245 PRK06835 DNA replication prote 97.2 5.2E-05 1.1E-09 85.4 -1.0 115 537-676 185-305 (329)
246 KOG2170 ATPase of the AAA+ sup 97.2 0.0045 9.8E-08 67.6 13.0 123 493-624 73-203 (344)
247 PF13148 DUF3987: Protein of u 97.2 0.0038 8.2E-08 71.6 13.4 185 600-825 150-366 (378)
248 PRK05707 DNA polymerase III su 97.1 0.00068 1.5E-08 76.5 6.5 58 598-681 105-162 (328)
249 KOG0736 Peroxisome assembly fa 97.1 0.01 2.2E-07 71.6 16.2 145 532-702 428-579 (953)
250 PRK06921 hypothetical protein; 97.1 0.00019 4.2E-09 78.6 1.4 24 537-560 119-142 (266)
251 KOG1808 AAA ATPase containing 97.0 0.00036 7.7E-09 91.4 3.4 139 536-682 441-584 (1856)
252 PF13401 AAA_22: AAA domain; P 96.8 0.00039 8.6E-09 66.8 1.0 23 537-559 6-28 (131)
253 PF05272 VirE: Virulence-assoc 96.8 0.0015 3.2E-08 68.6 5.1 98 534-652 51-150 (198)
254 PF03266 NTPase_1: NTPase; In 96.8 0.0041 8.9E-08 63.6 8.0 23 537-559 1-23 (168)
255 KOG2680 DNA helicase TIP49, TB 96.8 0.045 9.7E-07 59.8 15.9 179 537-822 254-432 (454)
256 COG2607 Predicted ATPase (AAA+ 96.8 0.0055 1.2E-07 65.0 8.9 119 504-652 62-184 (287)
257 PF03969 AFG1_ATPase: AFG1-lik 96.7 0.0014 3.1E-08 74.9 4.4 132 537-681 64-198 (362)
258 KOG1969 DNA replication checkp 96.7 0.0062 1.4E-07 73.1 9.7 79 537-624 328-412 (877)
259 PRK08769 DNA polymerase III su 96.7 0.0034 7.4E-08 70.5 7.2 56 600-681 114-169 (319)
260 PRK08939 primosomal protein Dn 96.6 0.00094 2E-08 74.7 1.8 24 537-560 158-181 (306)
261 PRK06964 DNA polymerase III su 96.6 0.0058 1.2E-07 69.4 8.1 56 599-681 132-188 (342)
262 COG5245 DYN1 Dynein, heavy cha 96.6 0.04 8.7E-07 70.4 15.5 230 537-825 1496-1745(3164)
263 COG1618 Predicted nucleotide k 96.6 0.0089 1.9E-07 60.0 8.2 26 535-560 5-30 (179)
264 PRK06871 DNA polymerase III su 96.5 0.0081 1.7E-07 67.7 8.8 118 537-681 26-163 (325)
265 PF05621 TniB: Bacterial TniB 96.5 0.028 6E-07 62.3 12.6 59 495-561 27-87 (302)
266 TIGR01613 primase_Cterm phage/ 96.5 0.024 5.2E-07 63.4 12.2 139 537-697 78-217 (304)
267 PHA02774 E1; Provisional 96.4 0.013 2.8E-07 69.9 9.8 98 537-653 436-534 (613)
268 PF06309 Torsin: Torsin; Inte 96.3 0.0054 1.2E-07 59.4 5.1 62 493-559 16-77 (127)
269 cd01120 RecA-like_NTPases RecA 96.2 0.013 2.9E-07 57.7 7.6 24 537-560 1-24 (165)
270 PRK08699 DNA polymerase III su 96.2 0.007 1.5E-07 68.3 5.9 58 598-681 112-169 (325)
271 KOG2035 Replication factor C, 96.2 0.16 3.5E-06 55.3 15.6 55 601-681 129-183 (351)
272 PRK14700 recombination factor 96.1 0.063 1.4E-06 59.3 12.3 88 754-859 63-152 (300)
273 PRK07993 DNA polymerase III su 96.0 0.0084 1.8E-07 68.0 5.5 57 598-681 107-164 (334)
274 COG3854 SpoIIIAA ncharacterize 96.0 0.0094 2E-07 62.9 5.1 28 534-561 136-163 (308)
275 PRK06090 DNA polymerase III su 95.9 0.026 5.6E-07 63.5 8.9 118 537-681 27-164 (319)
276 PF05729 NACHT: NACHT domain 95.9 0.0087 1.9E-07 59.4 4.4 22 537-558 2-23 (166)
277 PRK05917 DNA polymerase III su 95.8 0.022 4.7E-07 63.1 7.2 56 599-681 95-151 (290)
278 PF09848 DUF2075: Uncharacteri 95.3 0.013 2.8E-07 67.0 3.6 90 537-626 3-118 (352)
279 PHA02624 large T antigen; Prov 95.3 0.035 7.7E-07 66.5 7.2 112 537-682 433-559 (647)
280 PF13604 AAA_30: AAA domain; P 95.2 0.011 2.5E-07 61.7 2.7 89 537-625 20-119 (196)
281 PF01443 Viral_helicase1: Vira 95.2 0.025 5.5E-07 60.0 5.3 76 538-616 1-79 (234)
282 KOG0735 AAA+-type ATPase [Post 95.2 0.026 5.7E-07 67.7 5.8 139 537-701 433-588 (952)
283 PF13335 Mg_chelatase_2: Magne 95.2 0.074 1.6E-06 49.3 7.5 64 735-817 31-94 (96)
284 PRK13695 putative NTPase; Prov 95.2 0.042 9.1E-07 56.1 6.5 22 537-558 2-23 (174)
285 PF13671 AAA_33: AAA domain; P 95.2 0.017 3.6E-07 56.4 3.4 23 538-560 2-24 (143)
286 PF13207 AAA_17: AAA domain; P 95.1 0.018 3.8E-07 54.7 3.2 23 538-560 2-24 (121)
287 TIGR01447 recD exodeoxyribonuc 95.0 0.037 8E-07 67.3 6.5 37 507-558 147-183 (586)
288 PF13173 AAA_14: AAA domain 95.0 0.036 7.7E-07 53.7 5.3 79 537-624 4-85 (128)
289 PRK14532 adenylate kinase; Pro 95.0 0.025 5.4E-07 58.3 4.2 30 537-566 2-31 (188)
290 PF03215 Rad17: Rad17 cell cyc 94.9 0.35 7.7E-06 58.0 14.3 90 537-626 47-159 (519)
291 PRK13947 shikimate kinase; Pro 94.8 0.028 6.1E-07 56.8 4.2 30 537-566 3-32 (171)
292 PHA00729 NTP-binding motif con 94.8 0.021 4.5E-07 61.0 3.1 23 537-559 19-41 (226)
293 PF05970 PIF1: PIF1-like helic 94.8 0.049 1.1E-06 62.6 6.4 88 537-624 24-127 (364)
294 PF00519 PPV_E1_C: Papillomavi 94.7 0.071 1.5E-06 60.6 7.1 95 537-653 264-362 (432)
295 KOG3347 Predicted nucleotide k 94.7 0.029 6.3E-07 55.6 3.5 30 536-565 8-37 (176)
296 COG4930 Predicted ATP-dependen 94.6 0.46 1E-05 53.9 12.9 134 490-651 189-327 (683)
297 PRK10536 hypothetical protein; 94.6 0.081 1.8E-06 57.6 7.0 21 537-557 76-96 (262)
298 PRK00131 aroK shikimate kinase 94.5 0.036 7.8E-07 55.8 4.0 29 537-565 6-34 (175)
299 PRK10875 recD exonuclease V su 94.5 0.065 1.4E-06 65.5 6.8 37 507-558 154-190 (615)
300 PRK03839 putative kinase; Prov 94.5 0.036 7.7E-07 56.8 3.9 30 537-566 2-31 (180)
301 PF13191 AAA_16: AAA ATPase do 94.5 0.045 9.8E-07 55.6 4.6 24 537-560 26-49 (185)
302 cd00464 SK Shikimate kinase (S 94.4 0.038 8.1E-07 54.7 3.9 29 537-565 1-29 (154)
303 PRK08118 topology modulation p 94.4 0.039 8.4E-07 56.3 3.8 28 537-564 3-30 (167)
304 TIGR02768 TraA_Ti Ti-type conj 94.3 0.048 1E-06 68.3 5.4 88 537-624 370-464 (744)
305 COG0563 Adk Adenylate kinase a 94.3 0.037 8.1E-07 57.1 3.7 26 537-562 2-27 (178)
306 PRK07132 DNA polymerase III su 94.3 0.16 3.5E-06 56.8 8.9 118 537-681 20-146 (299)
307 PF13086 AAA_11: AAA domain; P 94.2 0.053 1.2E-06 56.8 4.7 22 538-559 20-41 (236)
308 TIGR01448 recD_rel helicase, p 94.2 0.056 1.2E-06 67.5 5.5 88 537-624 340-441 (720)
309 PRK00625 shikimate kinase; Pro 94.2 0.045 9.8E-07 56.2 3.9 29 537-565 2-30 (173)
310 TIGR01359 UMP_CMP_kin_fam UMP- 94.2 0.048 1E-06 55.8 4.1 25 538-562 2-26 (183)
311 PF13238 AAA_18: AAA domain; P 94.1 0.035 7.6E-07 52.7 2.8 22 538-559 1-22 (129)
312 PTZ00088 adenylate kinase 1; P 94.1 0.059 1.3E-06 57.9 4.7 32 536-567 7-38 (229)
313 PRK14530 adenylate kinase; Pro 94.0 0.051 1.1E-06 57.5 4.1 30 537-566 5-34 (215)
314 PRK13949 shikimate kinase; Pro 93.9 0.059 1.3E-06 55.1 4.1 29 537-565 3-31 (169)
315 cd01428 ADK Adenylate kinase ( 93.8 0.063 1.4E-06 55.3 4.1 28 537-564 1-28 (194)
316 PRK07261 topology modulation p 93.8 0.068 1.5E-06 54.7 4.3 24 537-560 2-25 (171)
317 PRK05818 DNA polymerase III su 93.6 0.12 2.7E-06 56.3 6.1 118 537-681 9-144 (261)
318 PRK04296 thymidine kinase; Pro 93.6 0.11 2.4E-06 54.1 5.5 22 537-558 4-25 (190)
319 PRK12608 transcription termina 93.5 0.094 2E-06 60.0 5.2 113 406-559 38-157 (380)
320 COG3267 ExeA Type II secretory 93.5 0.48 1E-05 51.2 10.2 190 537-812 53-266 (269)
321 PRK14531 adenylate kinase; Pro 93.5 0.075 1.6E-06 54.8 4.1 28 537-564 4-31 (183)
322 PRK06217 hypothetical protein; 93.3 0.09 2E-06 54.2 4.4 28 537-564 3-30 (183)
323 cd02021 GntK Gluconate kinase 93.3 0.077 1.7E-06 52.5 3.7 24 538-561 2-25 (150)
324 TIGR01360 aden_kin_iso1 adenyl 93.1 0.072 1.6E-06 54.5 3.3 26 537-562 5-30 (188)
325 PRK05057 aroK shikimate kinase 93.1 0.1 2.2E-06 53.4 4.4 30 537-566 6-35 (172)
326 PRK14528 adenylate kinase; Pro 93.1 0.092 2E-06 54.4 4.1 29 537-565 3-31 (186)
327 TIGR01313 therm_gnt_kin carboh 93.1 0.078 1.7E-06 53.3 3.5 24 538-561 1-24 (163)
328 KOG3595 Dyneins, heavy chain [ 93.1 0.23 4.9E-06 66.5 8.6 152 537-704 129-291 (1395)
329 cd02019 NK Nucleoside/nucleoti 93.1 0.085 1.8E-06 45.6 3.1 22 538-559 2-23 (69)
330 PRK06762 hypothetical protein; 93.1 0.093 2E-06 52.9 3.9 25 537-561 4-28 (166)
331 cd00227 CPT Chloramphenicol (C 93.1 0.08 1.7E-06 54.1 3.5 28 537-564 4-31 (175)
332 PRK13889 conjugal transfer rel 93.0 0.13 2.9E-06 65.7 6.1 88 537-624 364-458 (988)
333 PF01057 Parvo_NS1: Parvovirus 93.0 0.3 6.5E-06 53.8 8.0 96 537-653 115-210 (271)
334 PF13245 AAA_19: Part of AAA d 93.0 0.11 2.5E-06 45.9 3.8 23 537-559 12-35 (76)
335 TIGR01351 adk adenylate kinase 92.9 0.097 2.1E-06 55.2 3.9 28 538-565 2-29 (210)
336 KOG2227 Pre-initiation complex 92.8 0.8 1.7E-05 53.3 11.3 41 602-652 259-299 (529)
337 PLN02200 adenylate kinase fami 92.8 0.14 2.9E-06 55.3 4.9 30 535-564 43-72 (234)
338 PRK10078 ribose 1,5-bisphospho 92.8 0.1 2.2E-06 54.0 3.7 29 537-565 4-32 (186)
339 PRK14526 adenylate kinase; Pro 92.8 0.11 2.4E-06 55.1 4.2 30 537-566 2-31 (211)
340 PRK02496 adk adenylate kinase; 92.7 0.098 2.1E-06 53.8 3.6 28 537-564 3-30 (184)
341 cd02020 CMPK Cytidine monophos 92.6 0.12 2.5E-06 50.5 3.9 29 538-566 2-30 (147)
342 COG4619 ABC-type uncharacteriz 92.5 0.14 3.1E-06 51.9 4.2 24 537-560 31-54 (223)
343 PRK13826 Dtr system oriT relax 92.4 0.062 1.3E-06 69.1 2.0 89 537-625 399-494 (1102)
344 PRK00279 adk adenylate kinase; 92.3 0.14 3.1E-06 54.1 4.2 30 537-566 2-31 (215)
345 PF08477 Miro: Miro-like prote 92.1 0.12 2.7E-06 48.5 3.2 23 537-559 1-23 (119)
346 TIGR01618 phage_P_loop phage n 92.1 0.097 2.1E-06 55.9 2.6 24 533-556 10-33 (220)
347 TIGR00150 HI0065_YjeE ATPase, 92.1 0.23 4.9E-06 48.9 5.0 25 537-561 24-48 (133)
348 PRK13900 type IV secretion sys 92.1 0.17 3.7E-06 57.4 4.8 25 537-561 162-186 (332)
349 COG1485 Predicted ATPase [Gene 92.1 0.069 1.5E-06 60.0 1.5 26 537-562 67-92 (367)
350 PRK13946 shikimate kinase; Pro 92.0 0.17 3.6E-06 52.3 4.2 31 536-566 11-41 (184)
351 COG0703 AroK Shikimate kinase 92.0 0.14 3.1E-06 52.4 3.6 30 537-566 4-33 (172)
352 PRK03731 aroL shikimate kinase 92.0 0.15 3.3E-06 51.6 3.8 29 537-565 4-32 (171)
353 TIGR02322 phosphon_PhnN phosph 91.9 0.13 2.7E-06 52.6 3.2 24 537-560 3-26 (179)
354 PRK07276 DNA polymerase III su 91.9 0.56 1.2E-05 52.2 8.4 57 598-681 103-160 (290)
355 PRK13948 shikimate kinase; Pro 91.8 0.17 3.8E-06 52.4 4.1 29 537-565 12-40 (182)
356 PRK08233 hypothetical protein; 91.7 0.14 3E-06 52.1 3.2 24 537-560 5-28 (182)
357 cd01130 VirB11-like_ATPase Typ 91.6 0.25 5.5E-06 51.1 5.1 24 537-560 27-50 (186)
358 PF03193 DUF258: Protein of un 91.6 0.18 3.9E-06 51.2 3.8 22 537-558 37-58 (161)
359 PLN02459 probable adenylate ki 91.5 0.19 4.2E-06 54.9 4.3 31 536-566 30-60 (261)
360 COG1126 GlnQ ABC-type polar am 91.5 0.059 1.3E-06 56.8 0.3 22 537-558 30-51 (240)
361 PRK14529 adenylate kinase; Pro 91.5 0.16 3.4E-06 54.5 3.4 27 537-563 2-28 (223)
362 PRK14527 adenylate kinase; Pro 91.4 0.15 3.4E-06 52.8 3.3 25 537-561 8-32 (191)
363 PHA02530 pseT polynucleotide k 91.3 0.19 4.2E-06 55.7 4.1 24 537-560 4-27 (300)
364 cd00267 ABC_ATPase ABC (ATP-bi 91.1 0.34 7.3E-06 48.5 5.3 89 537-625 27-125 (157)
365 TIGR03263 guanyl_kin guanylate 91.0 0.17 3.7E-06 51.6 3.1 25 537-561 3-27 (180)
366 PLN02674 adenylate kinase 91.0 0.23 5.1E-06 53.8 4.2 28 537-564 33-60 (244)
367 PF13521 AAA_28: AAA domain; P 90.9 0.18 3.8E-06 50.8 3.0 21 538-558 2-22 (163)
368 PF06048 DUF927: Domain of unk 90.9 0.24 5.1E-06 55.1 4.2 64 537-615 195-258 (286)
369 cd03222 ABC_RNaseL_inhibitor T 90.8 0.24 5.1E-06 51.2 3.9 83 537-625 27-116 (177)
370 KOG1805 DNA replication helica 90.8 0.24 5.1E-06 61.7 4.3 37 508-558 672-708 (1100)
371 PF13555 AAA_29: P-loop contai 90.7 0.24 5.2E-06 42.2 3.1 23 537-559 25-47 (62)
372 PRK04040 adenylate kinase; Pro 90.7 0.23 5.1E-06 51.6 3.8 24 537-560 4-27 (188)
373 PRK06547 hypothetical protein; 90.7 0.37 8.1E-06 49.4 5.2 25 537-561 17-41 (172)
374 KOG1051 Chaperone HSP104 and r 90.7 0.29 6.3E-06 61.5 5.1 155 500-682 185-348 (898)
375 COG1936 Predicted nucleotide k 90.6 0.2 4.3E-06 51.1 3.0 22 537-558 2-23 (180)
376 PRK01184 hypothetical protein; 90.6 0.25 5.4E-06 50.7 3.8 27 537-564 3-29 (184)
377 PF13479 AAA_24: AAA domain 90.5 0.19 4.2E-06 53.2 3.0 27 535-565 3-29 (213)
378 PRK03846 adenylylsulfate kinas 90.5 0.18 4E-06 52.6 2.8 23 537-559 26-48 (198)
379 PRK05439 pantothenate kinase; 90.5 0.45 9.7E-06 53.5 5.9 80 472-560 26-111 (311)
380 PRK08154 anaerobic benzoate ca 90.4 0.52 1.1E-05 52.9 6.5 32 534-565 132-163 (309)
381 cd00071 GMPK Guanosine monopho 90.4 0.28 6E-06 48.3 3.8 25 538-562 2-26 (137)
382 smart00487 DEXDc DEAD-like hel 90.4 0.29 6.3E-06 49.2 4.1 24 537-560 26-50 (201)
383 PRK12339 2-phosphoglycerate ki 90.3 0.27 5.9E-06 51.6 3.9 27 537-563 5-31 (197)
384 PRK06851 hypothetical protein; 90.3 0.3 6.6E-06 56.0 4.5 23 537-559 216-238 (367)
385 PRK00300 gmk guanylate kinase; 90.2 0.23 4.9E-06 51.9 3.2 24 537-560 7-30 (205)
386 COG1116 TauB ABC-type nitrate/ 90.2 0.2 4.4E-06 53.9 2.8 23 537-559 31-53 (248)
387 PRK04182 cytidylate kinase; Pr 90.2 0.29 6.3E-06 49.6 3.9 29 537-565 2-30 (180)
388 TIGR02173 cyt_kin_arch cytidyl 90.1 0.26 5.6E-06 49.5 3.5 29 537-565 2-30 (171)
389 cd04177 RSR1 RSR1 subgroup. R 90.1 0.24 5.2E-06 49.7 3.2 24 535-558 1-24 (168)
390 KOG0060 Long-chain acyl-CoA tr 90.1 0.21 4.5E-06 59.3 3.0 29 532-560 458-486 (659)
391 PF05707 Zot: Zonular occluden 90.0 1.3 2.7E-05 46.2 8.6 29 538-566 3-35 (193)
392 PRK13851 type IV secretion sys 90.0 0.21 4.5E-06 57.0 2.9 25 537-561 164-188 (344)
393 PRK12678 transcription termina 90.0 0.37 7.9E-06 57.8 4.9 23 537-559 418-440 (672)
394 cd02027 APSK Adenosine 5'-phos 89.9 0.26 5.6E-06 49.2 3.1 22 538-559 2-23 (149)
395 PF01637 Arch_ATPase: Archaeal 89.8 0.39 8.5E-06 50.2 4.6 24 537-560 22-45 (234)
396 cd01124 KaiC KaiC is a circadi 89.7 0.25 5.4E-06 50.4 3.0 20 538-557 2-21 (187)
397 TIGR01420 pilT_fam pilus retra 89.6 0.66 1.4E-05 52.9 6.6 24 537-560 124-147 (343)
398 PF01926 MMR_HSR1: 50S ribosom 89.6 0.26 5.5E-06 46.5 2.7 21 537-557 1-21 (116)
399 TIGR00231 small_GTP small GTP- 89.6 0.28 6E-06 47.2 3.1 22 536-557 2-23 (161)
400 COG1102 Cmk Cytidylate kinase 89.6 0.32 7E-06 49.1 3.4 30 538-567 3-32 (179)
401 PRK14709 hypothetical protein; 89.5 2 4.4E-05 51.1 10.7 121 537-679 207-329 (469)
402 cd04119 RJL RJL (RabJ-Like) su 89.5 0.28 6E-06 48.5 3.0 22 536-557 1-22 (168)
403 PRK08356 hypothetical protein; 89.5 0.41 9E-06 49.8 4.5 21 537-557 7-27 (195)
404 TIGR03574 selen_PSTK L-seryl-t 89.4 0.24 5.2E-06 53.7 2.7 23 538-560 2-24 (249)
405 cd04137 RheB Rheb (Ras Homolog 89.4 0.28 6.1E-06 49.7 3.1 22 536-557 2-23 (180)
406 PF00437 T2SE: Type II/IV secr 89.2 0.4 8.7E-06 52.4 4.3 26 537-562 129-154 (270)
407 TIGR02237 recomb_radB DNA repa 89.1 0.38 8.2E-06 50.4 3.9 22 537-558 14-35 (209)
408 cd00157 Rho Rho (Ras homology) 89.0 0.31 6.8E-06 48.5 3.1 23 536-558 1-23 (171)
409 TIGR00235 udk uridine kinase. 89.0 0.3 6.6E-06 51.3 3.1 24 537-560 8-31 (207)
410 smart00175 RAB Rab subfamily o 89.0 0.31 6.7E-06 48.1 3.0 22 536-557 1-22 (164)
411 cd00154 Rab Rab family. Rab G 88.9 0.3 6.6E-06 47.3 2.8 22 537-558 2-23 (159)
412 cd04124 RabL2 RabL2 subfamily. 88.9 0.32 7E-06 48.5 3.0 22 536-557 1-22 (161)
413 PRK05480 uridine/cytidine kina 88.9 0.36 7.8E-06 50.7 3.5 24 536-559 7-30 (209)
414 COG4088 Predicted nucleotide k 88.9 0.26 5.6E-06 51.6 2.3 25 537-561 3-27 (261)
415 PRK14737 gmk guanylate kinase; 88.9 0.38 8.2E-06 50.0 3.6 25 537-561 6-30 (186)
416 cd01878 HflX HflX subfamily. 88.9 0.32 6.9E-06 50.6 3.1 26 533-558 39-64 (204)
417 COG2888 Predicted Zn-ribbon RN 88.9 0.28 6.1E-06 40.8 2.0 47 333-379 14-61 (61)
418 cd04155 Arl3 Arl3 subfamily. 88.8 0.33 7.1E-06 48.7 3.0 24 535-558 14-37 (173)
419 TIGR00554 panK_bact pantothena 88.8 0.67 1.5E-05 51.6 5.7 25 536-560 63-87 (290)
420 cd02023 UMPK Uridine monophosp 88.8 0.33 7.1E-06 50.5 3.1 22 538-559 2-23 (198)
421 cd04138 H_N_K_Ras_like H-Ras/N 88.7 0.35 7.6E-06 47.5 3.1 21 537-557 3-23 (162)
422 PRK05541 adenylylsulfate kinas 88.6 0.31 6.7E-06 49.7 2.7 24 537-560 9-32 (176)
423 KOG1942 DNA helicase, TBP-inte 88.6 0.42 9.1E-06 52.3 3.7 56 498-562 34-91 (456)
424 PF00406 ADK: Adenylate kinase 88.5 0.27 5.8E-06 48.9 2.1 22 540-561 1-22 (151)
425 cd01867 Rab8_Rab10_Rab13_like 88.5 0.36 7.8E-06 48.4 3.0 23 536-558 4-26 (167)
426 TIGR00017 cmk cytidylate kinas 88.5 0.48 1E-05 50.5 4.1 31 537-567 4-34 (217)
427 PRK13808 adenylate kinase; Pro 88.4 0.44 9.4E-06 54.0 4.0 29 537-565 2-30 (333)
428 cd04113 Rab4 Rab4 subfamily. 88.4 0.37 7.9E-06 47.7 3.0 21 537-557 2-22 (161)
429 TIGR02788 VirB11 P-type DNA tr 88.4 0.54 1.2E-05 52.8 4.7 24 537-560 146-169 (308)
430 PF13654 AAA_32: AAA domain; P 88.3 0.14 3.1E-06 61.2 0.0 45 502-557 8-52 (509)
431 cd04101 RabL4 RabL4 (Rab-like4 88.3 0.37 8E-06 47.8 3.0 22 536-557 1-22 (164)
432 PLN02165 adenylate isopentenyl 88.2 0.53 1.1E-05 53.2 4.4 29 537-565 45-73 (334)
433 KOG2383 Predicted ATPase [Gene 88.2 0.2 4.4E-06 57.0 1.1 44 599-654 193-236 (467)
434 cd04160 Arfrp1 Arfrp1 subfamil 88.1 0.36 7.7E-06 48.1 2.8 22 537-558 1-22 (167)
435 cd04136 Rap_like Rap-like subf 88.1 0.41 8.8E-06 47.3 3.2 22 536-557 2-23 (163)
436 COG3839 MalK ABC-type sugar tr 88.1 0.34 7.4E-06 54.9 2.8 23 537-559 31-53 (338)
437 PRK09825 idnK D-gluconate kina 88.0 0.49 1.1E-05 48.7 3.8 25 537-561 5-29 (176)
438 PF00005 ABC_tran: ABC transpo 88.0 0.31 6.7E-06 47.2 2.2 23 537-559 13-35 (137)
439 cd01131 PilT Pilus retraction 88.0 0.38 8.3E-06 50.4 3.0 24 537-560 3-26 (198)
440 COG3357 Predicted transcriptio 88.0 0.26 5.6E-06 44.5 1.4 27 346-377 59-85 (97)
441 PRK05800 cobU adenosylcobinami 87.9 0.59 1.3E-05 47.9 4.2 25 537-561 3-27 (170)
442 cd01862 Rab7 Rab7 subfamily. 87.8 0.39 8.6E-06 47.8 2.9 22 536-557 1-22 (172)
443 cd03258 ABC_MetN_methionine_tr 87.8 0.4 8.6E-06 51.2 3.0 24 537-560 33-56 (233)
444 COG1120 FepC ABC-type cobalami 87.7 0.4 8.7E-06 52.3 3.0 24 537-560 30-53 (258)
445 PRK00889 adenylylsulfate kinas 87.7 0.39 8.5E-06 48.9 2.8 24 537-560 6-29 (175)
446 smart00173 RAS Ras subfamily o 87.7 0.42 9.2E-06 47.4 3.0 21 537-557 2-22 (164)
447 cd03255 ABC_MJ0796_Lo1CDE_FtsE 87.6 0.38 8.3E-06 50.7 2.7 23 537-559 32-54 (218)
448 cd01860 Rab5_related Rab5-rela 87.6 0.44 9.5E-06 47.1 3.0 23 536-558 2-24 (163)
449 cd03227 ABC_Class2 ABC-type Cl 87.5 0.56 1.2E-05 47.4 3.7 22 537-558 23-44 (162)
450 PRK06851 hypothetical protein; 87.5 0.58 1.2E-05 53.7 4.2 24 537-560 32-55 (367)
451 TIGR02782 TrbB_P P-type conjug 87.5 0.42 9.1E-06 53.5 3.1 24 537-560 134-157 (299)
452 cd03292 ABC_FtsE_transporter F 87.4 0.41 8.9E-06 50.3 2.8 23 537-559 29-51 (214)
453 cd03269 ABC_putative_ATPase Th 87.4 0.39 8.4E-06 50.4 2.6 23 537-559 28-50 (210)
454 cd03301 ABC_MalK_N The N-termi 87.4 0.43 9.3E-06 50.1 3.0 23 537-559 28-50 (213)
455 PF06745 KaiC: KaiC; InterPro 87.4 0.51 1.1E-05 50.2 3.5 19 537-555 21-39 (226)
456 PLN02199 shikimate kinase 87.4 0.65 1.4E-05 51.7 4.4 29 537-565 104-132 (303)
457 PRK13709 conjugal transfer nic 87.3 0.81 1.8E-05 61.9 6.0 89 535-624 984-1087(1747)
458 PF00485 PRK: Phosphoribulokin 87.3 0.39 8.4E-06 50.0 2.5 24 538-561 2-25 (194)
459 COG4178 ABC-type uncharacteriz 87.3 0.44 9.6E-06 57.6 3.3 25 537-561 421-445 (604)
460 TIGR02315 ABC_phnC phosphonate 87.3 0.45 9.7E-06 51.1 3.1 23 537-559 30-52 (243)
461 cd04159 Arl10_like Arl10-like 87.3 0.4 8.7E-06 46.5 2.5 21 538-558 2-22 (159)
462 PRK14738 gmk guanylate kinase; 87.2 0.52 1.1E-05 49.6 3.5 24 537-560 15-38 (206)
463 cd02022 DPCK Dephospho-coenzym 87.2 0.66 1.4E-05 47.6 4.1 27 538-565 2-28 (179)
464 cd01868 Rab11_like Rab11-like. 87.2 0.45 9.7E-06 47.3 2.8 22 536-557 4-25 (165)
465 PF00735 Septin: Septin; Inte 87.2 0.4 8.6E-06 53.2 2.6 24 535-558 4-27 (281)
466 cd01918 HprK_C HprK/P, the bif 87.2 0.54 1.2E-05 47.2 3.3 23 536-558 15-37 (149)
467 cd04156 ARLTS1 ARLTS1 subfamil 87.1 0.42 9.2E-06 47.1 2.6 21 537-557 1-21 (160)
468 cd02024 NRK1 Nicotinamide ribo 87.1 0.66 1.4E-05 48.4 4.1 23 538-560 2-24 (187)
469 PF09723 Zn-ribbon_8: Zinc rib 87.1 0.46 1E-05 37.1 2.2 31 345-377 5-35 (42)
470 cd04106 Rab23_lke Rab23-like s 87.1 0.46 9.9E-06 46.9 2.8 22 536-557 1-22 (162)
471 PRK13833 conjugal transfer pro 87.0 0.47 1E-05 53.6 3.2 23 537-559 146-168 (323)
472 cd03228 ABCC_MRP_Like The MRP 87.0 0.54 1.2E-05 47.8 3.3 24 537-560 30-53 (171)
473 PRK14712 conjugal transfer nic 87.0 0.78 1.7E-05 61.3 5.5 27 599-625 930-956 (1623)
474 cd00876 Ras Ras family. The R 87.0 0.45 9.8E-06 46.5 2.7 21 537-557 1-21 (160)
475 KOG0741 AAA+-type ATPase [Post 86.9 0.43 9.2E-06 56.1 2.7 68 536-611 539-610 (744)
476 TIGR03499 FlhF flagellar biosy 86.9 1.8 4E-05 48.0 7.7 23 537-559 196-218 (282)
477 cd04145 M_R_Ras_like M-Ras/R-R 86.9 0.52 1.1E-05 46.5 3.1 22 536-557 3-24 (164)
478 cd04157 Arl6 Arl6 subfamily. 86.9 0.45 9.7E-06 46.9 2.6 22 537-558 1-22 (162)
479 cd03262 ABC_HisP_GlnQ_permease 86.9 0.5 1.1E-05 49.6 3.1 23 537-559 28-50 (213)
480 TIGR03608 L_ocin_972_ABC putat 86.8 0.48 1E-05 49.5 2.9 23 537-559 26-48 (206)
481 PRK14722 flhF flagellar biosyn 86.8 1.8 3.9E-05 49.9 7.7 22 537-558 139-160 (374)
482 TIGR00376 DNA helicase, putati 86.8 0.63 1.4E-05 57.5 4.4 22 537-558 175-196 (637)
483 smart00072 GuKc Guanylate kina 86.8 0.67 1.5E-05 47.8 4.0 26 537-562 4-29 (184)
484 PRK09361 radB DNA repair and r 86.8 0.62 1.4E-05 49.5 3.8 22 537-558 25-46 (225)
485 PRK12338 hypothetical protein; 86.8 0.72 1.6E-05 51.9 4.4 29 536-564 5-33 (319)
486 TIGR02673 FtsE cell division A 86.8 0.49 1.1E-05 49.7 3.0 23 537-559 30-52 (214)
487 cd00820 PEPCK_HprK Phosphoenol 86.7 0.49 1.1E-05 44.8 2.6 20 537-556 17-36 (107)
488 TIGR03410 urea_trans_UrtE urea 86.6 0.47 1E-05 50.5 2.8 23 537-559 28-50 (230)
489 cd03254 ABCC_Glucan_exporter_l 86.6 0.54 1.2E-05 50.0 3.2 23 537-559 31-53 (229)
490 PRK13894 conjugal transfer ATP 86.6 0.5 1.1E-05 53.4 3.1 22 537-558 150-171 (319)
491 cd03266 ABC_NatA_sodium_export 86.6 0.49 1.1E-05 49.9 2.9 23 537-559 33-55 (218)
492 cd04140 ARHI_like ARHI subfami 86.6 0.56 1.2E-05 46.9 3.1 22 536-557 2-23 (165)
493 cd04117 Rab15 Rab15 subfamily. 86.5 0.53 1.1E-05 47.0 2.9 20 537-556 2-21 (161)
494 cd03247 ABCC_cytochrome_bd The 86.5 0.52 1.1E-05 48.2 2.9 24 537-560 30-53 (178)
495 cd03263 ABC_subfamily_A The AB 86.5 0.51 1.1E-05 49.8 2.9 23 537-559 30-52 (220)
496 PRK04220 2-phosphoglycerate ki 86.4 1.6 3.5E-05 48.8 6.8 28 535-562 92-119 (301)
497 COG3378 Phage associated DNA p 86.4 2.9 6.2E-05 50.2 9.3 136 537-694 232-368 (517)
498 COG3842 PotA ABC-type spermidi 86.4 0.48 1E-05 54.0 2.8 22 537-558 33-54 (352)
499 cd03246 ABCC_Protease_Secretio 86.3 0.6 1.3E-05 47.6 3.3 24 537-560 30-53 (173)
500 PF00625 Guanylate_kin: Guanyl 86.3 0.64 1.4E-05 47.8 3.5 27 537-563 4-30 (183)
No 1
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=100.00 E-value=3.7e-190 Score=1575.81 Aligned_cols=818 Identities=58% Similarity=0.932 Sum_probs=753.6
Q ss_pred CCCccccccccccchhHhhhcCCCCCccccCCCCCccccccccccCHHHHHHHHHHHHHHhcccccCcCccccCccccCC
Q 002353 49 PEDEEEGEDLFNDNFMDDYRRLDEHDQYESLGLDESLEDERDLDQIIADRRAAELELEARDGQMSINPSRKKLPQLLHDQ 128 (932)
Q Consensus 49 ~~~~~~gedl~~~~~~~dy~~~~~~d~y~~~~~d~~~~~~~~~~~~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 128 (932)
++|||||||||||+||+|||++||+|+||++ +|| +.+ +++..+|||||+.|++||+.....+. +....+
T Consensus 37 ~~eee~ge~l~~d~me~Dy~~~~e~d~yd~~-~dd--~~~---el~~~~r~a~~~~l~~rd~~~~~~~~-----~~~~~~ 105 (854)
T KOG0477|consen 37 DEEEEEGEDLFGDGMERDYRAMPELDQYDAE-LDD--DVE---ELSLSDRRAADADLRERDRGLDEDSE-----DTEDGD 105 (854)
T ss_pred chhhhhhhhhhccchhhhhccChhhhhcccc-ccc--cHh---hhchhhHHHHHhHHhhhhcCcchhhh-----hccccc
Confidence 4567889999999999999999999999999 877 377 89999999999999999994321100 111111
Q ss_pred CCCCCCCCcccccccccCccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHhccCceeeeecchhHH
Q 002353 129 DTDDDSYRPSKRSRADFRPRRSQIDNDAMQSSPRQSRDDVPMTDATDDYPYEDDDGDEAEFEMYRVQGTLREWVTRDEVR 208 (932)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 208 (932)
.++.+..+++|+||+ +. .+++ ++ +..++++++|+++++| ++++++|++++.++
T Consensus 106 ~~~~~~~~~~r~r~~--~~-~~~~---~~----~~~~~~e~ie~l~~~k-----------------~~s~~e~v~~~~~r 158 (854)
T KOG0477|consen 106 SDEEDSTVPRRGRRG--DA-ADDD---DE----EDEEMEESIESLEDIK-----------------GHSYREWVSMDGVR 158 (854)
T ss_pred hhhhccccccccCCc--cc-cccc---cc----CcccchhhHHHHHHhh-----------------ccchHHHHhccchh
Confidence 111111123333332 22 1111 11 1235677888888888 88999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHcCCcEEEEehhhHhccCHHHHHHHHHCHHHHHHHHHHHHHHHHHh
Q 002353 209 RFIAKKFKEFLLTYVSPKSEQGDFEYVRLINEIVSANKCSLEIDYKQFIYIHPNIAIWLADAPQSVLEVMEDVARNVVFN 288 (932)
Q Consensus 209 ~~i~~~F~~FL~~f~~~~d~~g~~~Y~~~I~~m~~~~~~sl~Vd~~dL~~~~p~La~~L~~~P~~~L~if~~a~~evv~~ 288 (932)
++|.++|++||++|. +++|..+|.++|+.||..|..|++|+|.||....+.||+||.++|.++|.+|+.++.+++..
T Consensus 159 ~~i~~~fk~fl~~y~---d~~~~~~~~~ri~~~~~~n~esl~v~y~dla~~~~~la~fl~~ap~e~l~I~dr~a~~~v~~ 235 (854)
T KOG0477|consen 159 REIARRFKNFLREYV---DENGHNVYIERIRRMCEENRESLEVNYTDLAESEHVLAYFLPEAPEEMLEIFDRAALEVVLL 235 (854)
T ss_pred hHHHHHHHHHHHHHh---cccccchHHHHHHHHHhhchHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcccccceEEEEEccCCcccccccccccCCCcEEEEEEEEEEecccceeeeEEEEEcCCCCCccccccccCcccccC
Q 002353 289 LHPNYKRIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRTGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKV 368 (932)
Q Consensus 289 ~~p~~~~i~~~I~Vri~nlp~~~~iR~Lrs~~igkLV~V~GiVtr~s~V~p~l~~~~f~C~~C~~~~~~~~q~~~~~~~p 368 (932)
+||.|.+++.+||||+.++|.+..||.||..|+|+||.+.|+|||+|+|+|++..++|.|.+||.+++||+|..+.+++|
T Consensus 236 ~~p~yeri~~~ihvris~lP~~~~lr~lRq~Hln~Lvr~~GvVtr~tgV~pql~~vky~C~KC~~vlgPF~qs~n~evkp 315 (854)
T KOG0477|consen 236 HYPNYERIHNEIHVRISDLPVCESLRSLRQLHLNQLVRTSGVVTRRTGVFPQLSVVKYDCLKCGFVLGPFVQSSNSEVKP 315 (854)
T ss_pred hCCChhhcccceeeeeecCCccccHHHHHHhccCceEEeeeEEEecceeehhhHHHhhhHHhhCCccCceeeccCceeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceEEeecCceeeeeEEEEEeecCCCCCCCCCCeEEEEEEeccccccCCCCCeEEEEEEEeecccCcCCcC
Q 002353 369 GSCPECQSKGPFTINIEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTK 448 (932)
Q Consensus 369 ~~C~~C~s~~~f~~~~~~s~~~d~Q~i~iQE~~~~v~~G~~Pr~i~V~L~~dLvd~~~pGd~V~ItGI~~~~~~~~~~~k 448 (932)
++||.|+|+|||.+|.+.|+|+|||+|+|||+|+.||+|++||+++|+|..||||+|||||+|.|||||+++|+.++|.+
T Consensus 316 ~~C~~cqSkGpf~vn~e~TvyrnYQritiQEspg~v~~GrlPRsk~vILl~DLvD~~kpGdEievTGIy~nn~d~sLN~k 395 (854)
T KOG0477|consen 316 GSCPECQSKGPFEVNVEETVYRNYQRITIQESPGTVPAGRLPRSKEVILLADLVDSCKPGDEIEVTGIYTNNFDGSLNTK 395 (854)
T ss_pred CCCccccCCCCCccchhhhhhcccceeeeccCCCcCCCCccccchhheehhhhhhhcCCCcceEEeeeeccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEEEeccccccccccccccCHHHHHHHHHHhcChhhHHHHHHhhcccccChHHHHHHHhhhhhcCccccccC
Q 002353 449 NGFPVFATVVEANHITKKHDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKG 528 (932)
Q Consensus 449 ~~~~vf~~~i~an~I~~~~~~~~~~~lt~~d~~~i~~l~~~~~i~~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~ 528 (932)
+|||+|.|+|+||||.++...+...++|+++++.|.+++++|.|..+|++||||+||||+.||+|++|+||||++++..+
T Consensus 396 ngFpvfatvi~ANhV~~k~~~~~~~~ltded~k~i~~lskd~~i~~rIiaSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~ 475 (854)
T KOG0477|consen 396 NGFPVFATVIEANHVVKKDGKFDVDELTDEDFKEIWELSKDPPIKERIIASIAPSIYGHEDVKRAVALALFGGVPKNPGG 475 (854)
T ss_pred CCccccceeheehhhhhhccccchhHHhHHHHHHHHHHhcCccHHHHHHHhhCchhhchHHHHHHHHHHHhcCCccCCCC
Confidence 99999999999999999988888899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccc
Q 002353 529 KHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEF 608 (932)
Q Consensus 529 ~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~ 608 (932)
||++||||||||+|||||||||+|||++++++|+++++|.|+|++||||++.++|.+++|++++|||||||+||||||||
T Consensus 476 khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEF 555 (854)
T KOG0477|consen 476 KHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEF 555 (854)
T ss_pred CceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCCh
Q 002353 609 DKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDP 688 (932)
Q Consensus 609 dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~ 688 (932)
|||++++|++||||||||+|||+||||+++|++||+||||+||++||||++.+|++|++|++|+|||||++|+++|..|+
T Consensus 556 DKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~ 635 (854)
T KOG0477|consen 556 DKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDP 635 (854)
T ss_pred hhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeeeecccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHH
Q 002353 689 VVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVY 768 (932)
Q Consensus 689 ~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y 768 (932)
..|+++|+||+.+|.++||...... ... .........++|+++|||||.|||.+++|+|.+..++++.+.|
T Consensus 636 ~~De~lA~fVV~Sh~r~hp~~~~~~-------~~~--e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vy 706 (854)
T KOG0477|consen 636 VQDEKLAKFVVGSHVRHHPSNKEED-------GLE--EPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVY 706 (854)
T ss_pred hhHHHHHHHHHHhHhhcCCcccccC-------ccc--ccccccccccChHHHHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 9999999999999999999631000 000 0011122567999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHhhhhcchhh
Q 002353 769 AELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSFISTQKFGVQKALQRSFRKYMTFKKE 848 (932)
Q Consensus 769 ~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~~~~~k~s~~~~l~~~f~~~~~~~~~ 848 (932)
++||+++..++++|||+||+||+||+|+|||||+||++|+.+|+..||+++++||+++||+|+++.|++.|.+|++.+++
T Consensus 707 a~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ldSfi~aQk~Sv~rslr~tF~~y~~~~kd 786 (854)
T KOG0477|consen 707 ADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVMLDSFISAQKFSVMRSLRKTFARYLSFRKD 786 (854)
T ss_pred HHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHhcCccccccccCchhhhcCCcEEccCCCeEEEe
Q 002353 849 YNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQELEIYDLHPFFSSAEFSGAGFQLDEARGVIRHR 928 (932)
Q Consensus 849 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~i~~~~~f~~s~~~~~~~~~~~~~~~~~~~~ 928 (932)
++++|+++||+|+.++++|.+. + . ..++|.++|++++|.++++||.|.+|+.+||.||.++++|.++
T Consensus 787 ~nelllf~lkql~~~q~~~~~~--~----~-------~~~e~~~ka~q~~i~~~~~fy~s~lf~~~~f~~d~~r~~il~~ 853 (854)
T KOG0477|consen 787 NNELLLFILKQLVAEQMKYQRF--G----A-------GLDELIEKAKQLDIHNLSPFYSSELFKDNGFSLDPKRKLILQQ 853 (854)
T ss_pred cchhhhHHHHHHHHHHHHHhhc--c----C-------CcHHHHHHHHhcCcccCCcccchhhhhhcCcccCcccCeeecc
Confidence 9999999999999999999832 2 1 2239999999999999999999999999999999999999876
Q ss_pred e
Q 002353 929 L 929 (932)
Q Consensus 929 ~ 929 (932)
+
T Consensus 854 ~ 854 (854)
T KOG0477|consen 854 V 854 (854)
T ss_pred C
Confidence 4
No 2
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=100.00 E-value=1.9e-123 Score=1047.17 Aligned_cols=678 Identities=34% Similarity=0.564 Sum_probs=578.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHcCCcEEEEehhhHhc-cCHHHHHHHHHCHHHHHHHHHHHHHHH
Q 002353 207 VRRFIAKKFKEFLLTYVSPKSEQGDFEYVRLINEIVSANKCSLEIDYKQFIY-IHPNIAIWLADAPQSVLEVMEDVARNV 285 (932)
Q Consensus 207 ~~~~i~~~F~~FL~~f~~~~d~~g~~~Y~~~I~~m~~~~~~sl~Vd~~dL~~-~~p~La~~L~~~P~~~L~if~~a~~ev 285 (932)
....+.+.|..||..|. +..++.+|.+.|..+...+..+|.|||.||.. +++.|+..|.++|..+++++..|++.+
T Consensus 21 ~g~~~~e~~~~Fle~~~---~~~~e~~~~~~i~~~~~~~~~tl~vd~~~l~~~~~~~la~~l~~~~~r~~p~m~~av~~~ 97 (764)
T KOG0480|consen 21 TGERVEEEFLQFLESFK---VQAGEKKYLQSIELLDRPERNTLLVDFQHLSKQYNQNLATALEENYYRVLPCMCRAVHKV 97 (764)
T ss_pred cccchHHHHHHHHHHhh---ccccchhhHHHHHhhccCCCceEEEEHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 34677889999999997 56788999999999999999999999999999 999999999999999999999999999
Q ss_pred HHhhCCCcccccceEEEEEccCCcccccccccccCCCcEEEEEEEEEEecccceeeeEEEEEcCCCCCccccccccCccc
Q 002353 286 VFNLHPNYKRIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRTGVFPQLQQVKYDCNKCGAILGPFFQNSYSE 365 (932)
Q Consensus 286 v~~~~p~~~~i~~~I~Vri~nlp~~~~iR~Lrs~~igkLV~V~GiVtr~s~V~p~l~~~~f~C~~C~~~~~~~~q~~~~~ 365 (932)
+....++......+|++||+|+|....+|+|++..+|+||+++|+|+|+|+|+|.+++++|.|.+||.++...+|+. +.
T Consensus 98 l~d~~~~~~~~~~~~~v~f~nlp~~~~irdlra~~iG~Lv~isGtVvRts~VrPelt~~~F~C~~C~t~i~~v~q~f-kY 176 (764)
T KOG0480|consen 98 LKDWSTNSGALVKKIYVRFYNLPTRHKIRDLRAARIGKLVRISGTVVRTSPVRPELTKMTFLCEKCGTVIRNVEQQF-KY 176 (764)
T ss_pred HHcccccccccceeEEEEEeccccccccccccHhhhcceEEEEEEEEEeecccceeeeeEEEHhhCCCeeccchhcC-cc
Confidence 98854444444678999999999999999999999999999999999999999999999999999999988777765 45
Q ss_pred ccCCCCCC--CCCCCceEEeecCceeeeeEEEEEeecCCCCCCCCCCeEEEEEEeccccccCCCCCeEEEEEEEeecccC
Q 002353 366 VKVGSCPE--CQSKGPFTINIEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDL 443 (932)
Q Consensus 366 ~~p~~C~~--C~s~~~f~~~~~~s~~~d~Q~i~iQE~~~~v~~G~~Pr~i~V~L~~dLvd~~~pGd~V~ItGI~~~~~~~ 443 (932)
..|..||+ |.++..|.++.+++.|.|||+|+|||.....|.|++||+++|||.+|||++|+|||+|+||||+...++.
T Consensus 177 t~Pt~C~np~C~nrr~f~l~~~~s~f~D~QkIrIQE~~~E~p~GsiPRtvdviLr~dlVe~~~pGD~v~~TGiliVvpdv 256 (764)
T KOG0480|consen 177 TEPTKCPNPVCSNRRSFTLDRSSSRFLDWQKIRIQELQAEIPRGSIPRTVDVILRGDLVETAQPGDKVDITGILIVVPDV 256 (764)
T ss_pred CCCccCCCccccCCceeeeecccceeeeeeeeehhhhhhhCCCCCCCceeEEEEhhhhHhhcCCCCEEEEEEEEEEecCh
Confidence 68999986 8886689999999999999999999999999999999999999999999999999999999999876642
Q ss_pred c---------CCcCCCcc-eEEEEEEEeccccccccc--------------------cccccCHHHHHHHHHHhcChhhH
Q 002353 444 S---------LNTKNGFP-VFATVVEANHITKKHDLF--------------------SAYKLTQEDKEEIEKLAKDPRIG 493 (932)
Q Consensus 444 ~---------~~~k~~~~-vf~~~i~an~I~~~~~~~--------------------~~~~lt~~d~~~i~~l~~~~~i~ 493 (932)
+ .|.+.|.. .+-+.++|++|...+.+. -...+|.+|+..|+++++++++|
T Consensus 257 ~~l~~pgsk~~n~r~~~~~~~i~~lkal~Vrdl~yq~aFlac~~~~~~~~ee~~~~~~~~~~s~~e~~~~~em~~~~nly 336 (764)
T KOG0480|consen 257 SQLGGPGSKAENNRGGETGDGITGLKALGVRDLTYQLAFLACHVQSTLAVEEDDEEDMLNSMSSEEFAEIREMSKDENLY 336 (764)
T ss_pred HHhcCCccccccccCCCcccceeeehhcccccchhhhhHhhhhcccccccchhhhHHHhhhccHHHHHHHHHHhcCchHH
Confidence 1 11111111 566889999997655421 12358899999999999999999
Q ss_pred HHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccc
Q 002353 494 ERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAV 573 (932)
Q Consensus 494 ~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~ 573 (932)
.+|++|+||+||||+.||.||+|+||||+.|....|+++||||||||+|||||||||||++++.++||++|++|+.+|++
T Consensus 337 ~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaA 416 (764)
T KOG0480|consen 337 KNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAA 416 (764)
T ss_pred HHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeecCcccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCC
Q 002353 574 GLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVG 653 (932)
Q Consensus 574 gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~ 653 (932)
|||+++++|..+|+|++++|||++||+|||||||||||+..+|.+||||||||+|||+|||++++||+|++|||||||++
T Consensus 417 GLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~ 496 (764)
T KOG0480|consen 417 GLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVG 496 (764)
T ss_pred cceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCC
Q 002353 654 GRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDP 733 (932)
Q Consensus 654 Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (932)
||||..+++.+|+++++||||||||+|+|.|.+++..|..||+||+..|...... ..-.
T Consensus 497 GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~---------------------~~~~ 555 (764)
T KOG0480|consen 497 GHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDA---------------------TERV 555 (764)
T ss_pred CccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhcccccc---------------------cccc
Confidence 9999999999999999999999999999999999999999999999998643221 1111
Q ss_pred CCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcc-cC--CCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHH
Q 002353 734 EILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRES-SH--GQGVPIAVRHIESMIRMSEAHARMRLRQHVTQE 810 (932)
Q Consensus 734 ~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~-~~--~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~ 810 (932)
..++.+.+++||.||| +++|+|+.+|.+.|.++|..||+.. .+ ..+|+||+||||||||||||+||+++++.||++
T Consensus 556 ~~~~~e~vrkYi~yAR-~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~ 634 (764)
T KOG0480|consen 556 CVYTLEQVRKYIRYAR-NFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKE 634 (764)
T ss_pred ccccHHHHHHHHHHHH-hcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHH
Confidence 4689999999999999 6999999999999999999999887 33 348999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhchHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceee-HHH
Q 002353 811 DVNMAIRVLLDSFISTQKFGVQKALQRSFRKYMTFKKEYNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVK-VVD 889 (932)
Q Consensus 811 Dv~~AI~l~~~S~~~~~k~s~~~~l~~~f~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~ 889 (932)
||.+|++|+..|++...--.+. +...+.. +....+.....-+.+..-.-.|.++..+. .+.+. ..+
T Consensus 635 ~v~ea~eLlk~Siv~ve~ddi~--~~d~~~~----~~~~g~s~~~~~k~~~~a~~~y~~~~~~~-------v~~~~~~~E 701 (764)
T KOG0480|consen 635 DVEEAVELLKKSIVRVEGDDIE--LDDNDGE----NDSGGESAQKPKKKFTSALDEYVRLSNGI-------VLSIRVERE 701 (764)
T ss_pred HHHHHHHHHHhhheeecccccc--ccccccc----cCcccccccchhhHHHHHHHHHHHHhhce-------eEEEEeecc
Confidence 9999999999998864221111 0000000 00000111111122333333444443331 12222 113
Q ss_pred HHHHHHhcCc--cccccccCchhhhcCCcEEccCCCeEE
Q 002353 890 LLNRAQELEI--YDLHPFFSSAEFSGAGFQLDEARGVIR 926 (932)
Q Consensus 890 l~~~~~~~~i--~~~~~f~~s~~~~~~~~~~~~~~~~~~ 926 (932)
+.+ +++.++ ..+..|.++ ++..|+++++++++++
T Consensus 702 ~~~-~~~~~lv~~~l~~~e~~--l~~e~~li~k~~~~~k 737 (764)
T KOG0480|consen 702 LAD-LKRSNLVVWYLSEFEDS--LNSEGELIKKGPKVYK 737 (764)
T ss_pred hhh-hhhhhhhhhhHHHHHhh--hccHHHHHHhcchHHH
Confidence 333 335444 577788877 9999999999988655
No 3
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.8e-119 Score=1058.34 Aligned_cols=591 Identities=45% Similarity=0.712 Sum_probs=537.9
Q ss_pred HHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHcCCcEEEEehhhHhccCHHHHHHHHHCHHHHHHHHHHHHHHHHHhhC
Q 002353 211 IAKKFKEFLLTYVSPKSEQGDFEYVRLINEIVSANKCSLEIDYKQFIYIHPNIAIWLADAPQSVLEVMEDVARNVVFNLH 290 (932)
Q Consensus 211 i~~~F~~FL~~f~~~~d~~g~~~Y~~~I~~m~~~~~~sl~Vd~~dL~~~~p~La~~L~~~P~~~L~if~~a~~evv~~~~ 290 (932)
+.+.|+ |. |. .+ ....|.+++ .|...+..+++|++.||..+++.|+..|.++|.+++++|+.++.++...++
T Consensus 3 ~~~~~~--~~-~~---~~-~~~~~~~~~-~~~~~~~~s~~v~~~~~~~~~~~la~~l~~~p~~~i~~~~~~~~~~~~~~~ 74 (682)
T COG1241 3 IAELFR--LR-FK---WE-DILEYAENI-ILDKIINRSLEVDLSDLEEYDPELAGLLLENPEEIIPLFEKALDEIALLLF 74 (682)
T ss_pred hhhhhh--hh-cc---cc-hHHHHHHHh-hhhhccceEEEEEhHHhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHhcC
Confidence 556777 44 64 22 266788876 555555569999999999999999999999999999999999999999999
Q ss_pred CCcccccceEEEEEccCCcccccccccccCCCcEEEEEEEEEEecccceeeeEEEEEcCCCCCccccccccCcccccCCC
Q 002353 291 PNYKRIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRTGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKVGS 370 (932)
Q Consensus 291 p~~~~i~~~I~Vri~nlp~~~~iR~Lrs~~igkLV~V~GiVtr~s~V~p~l~~~~f~C~~C~~~~~~~~q~~~~~~~p~~ 370 (932)
|.+......+|+||.++|...++|+|++.|+||||+|+|+|+|+|.|+|.++++.|.|.+||++....++.. ...+|..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~iR~l~s~~igkLV~v~GiV~r~s~v~p~~~~~~~~C~~Cg~~~~~~~~~~-~~~~~~~ 153 (682)
T COG1241 75 PEVDRSLKKIHVRFKNLPNRLSIRELRSEHIGKLVSVEGIVTRASEVRPRLKKAVFECPKCGREVEVEQSEF-RVEPPRE 153 (682)
T ss_pred ccccccccceEEEecCCcCCcChhhCchhhCCcEEEEEEEEEecccccceeEEEEEEcCCCCCEEEEEeccc-cccCCcc
Confidence 999887789999999999999999999999999999999999999999999999999999999977555443 3457788
Q ss_pred CCCCCC--CCceEEeecCceeeeeEEEEEeecCCCCCCCCCCeEEEEEEeccccccCCCCCeEEEEEEEeecccCcCCcC
Q 002353 371 CPECQS--KGPFTINIEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTK 448 (932)
Q Consensus 371 C~~C~s--~~~f~~~~~~s~~~d~Q~i~iQE~~~~v~~G~~Pr~i~V~L~~dLvd~~~pGd~V~ItGI~~~~~~~~~~~k 448 (932)
|++|.. +++|.++.+.|.|+|||+|+|||.|+.+|+|.+||+++|+|.+|||++++|||+|.||||++..++.+++..
T Consensus 154 C~~~~~~~~~~~~~~~~~s~f~d~Q~vkiQE~pe~~p~g~~Prs~~vil~~dlv~~~~pGdrV~itGi~~~~~~~~~~~~ 233 (682)
T COG1241 154 CENCGKFGKGPLKLVPRKSEFIDFQKVKIQELPELVPGGELPRSIEVILEDDLVDSVRPGDRVKITGVVRIVPSRSLSGR 233 (682)
T ss_pred CCCccccCCCceEEecCcceeeeceEEEEecCcccCCCCCCCceEEEEEecCcccccCCCCEEEEEEEEecccccccccc
Confidence 999922 458999999999999999999999999999999999999999999999999999999999998875444444
Q ss_pred CCcceEEEEEEEeccccccccccccccCHHHHHHHHHHhcChhhHHHHHHhhcccccChHHHHHHHhhhhhcCccccccC
Q 002353 449 NGFPVFATVVEANHITKKHDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKG 528 (932)
Q Consensus 449 ~~~~vf~~~i~an~I~~~~~~~~~~~lt~~d~~~i~~l~~~~~i~~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~ 528 (932)
...++|.+|++|++|.+.... ....+|++|++.|++++++|+++++|++||||+||||+.||+||+|+||||+.|..++
T Consensus 234 ~~~~~~~~~~~a~~v~~~~~~-~~~~~t~ed~e~i~elak~~~i~~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~ 312 (682)
T COG1241 234 RKGPVFEIYLEANSVEKLDKR-EEVEITEEDEEEIKELAKRPDIYDILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPD 312 (682)
T ss_pred cCCceEEEEEEEEEEEeccch-hhccCCHHHHHHHHHHhcCCcHHHHHHHHhcccccCcHHHHHHHHHHhcCCCcccCCC
Confidence 557899999999999988765 5678999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccc
Q 002353 529 KHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEF 608 (932)
Q Consensus 529 ~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~ 608 (932)
|+++||||||||+||||||||||++++++++||++|++|+++|++||||++.+++.+|+|++++|||++||+||||||||
T Consensus 313 g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEf 392 (682)
T COG1241 313 GTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEF 392 (682)
T ss_pred CcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCCh
Q 002353 609 DKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDP 688 (932)
Q Consensus 609 dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~ 688 (932)
|||+..++++||||||||+|||+||||+++||+||+|+|||||.+|||++.+++.+|++|+++|||||||+|+++|.+++
T Consensus 393 dKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~ 472 (682)
T COG1241 393 DKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDE 472 (682)
T ss_pred cCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHH
Q 002353 689 VVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVY 768 (932)
Q Consensus 689 ~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y 768 (932)
..|+.+|+||+..|....+....... . ...... =+.++||+||.|||++++|.|+++|.+.|.+||
T Consensus 473 ~~D~~ia~hil~~h~~~~~~~~~~~~------~-------~~~~~~-~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Y 538 (682)
T COG1241 473 EKDEEIAEHILDKHRGEEPEETISLD------G-------VDEVEE-RDFELLRKYISYARKNVTPVLTEEAREELEDYY 538 (682)
T ss_pred cchHHHHHHHHHHHhccccccccccc------c-------cccccc-CcHHHHHHHHHHHhccCCcccCHHHHHHHHHHH
Confidence 99999999999999876654210000 0 000000 178999999999999999999999999999999
Q ss_pred HHHHhccc---CCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhhhh
Q 002353 769 AELRRESS---HGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSFIS 825 (932)
Q Consensus 769 ~~lR~~~~---~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~~~ 825 (932)
++||+... ..+.+|+|+||||++||||+|||||+|++.|+.+||.+||+|+..|+.+
T Consensus 539 v~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~~~l~~ 598 (682)
T COG1241 539 VEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDFSLKT 598 (682)
T ss_pred HHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999643 3567999999999999999999999999999999999999999999865
No 4
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=100.00 E-value=8.3e-113 Score=1020.44 Aligned_cols=621 Identities=27% Similarity=0.430 Sum_probs=527.9
Q ss_pred hHHHHHHHHHHHHHhhcCCC------CCC------CCchhHHHHHHHHHHcCC----------cEEEEehhhHhccCHHH
Q 002353 206 EVRRFIAKKFKEFLLTYVSP------KSE------QGDFEYVRLINEIVSANK----------CSLEIDYKQFIYIHPNI 263 (932)
Q Consensus 206 ~~~~~i~~~F~~FL~~f~~~------~d~------~g~~~Y~~~I~~m~~~~~----------~sl~Vd~~dL~~~~p~L 263 (932)
+.-+++.++|-+||.+|.+- +|+ ....+|..+|.+|+..+. .+|+|||.||..|++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~sl~Vd~~~l~~fd~~L 162 (915)
T PTZ00111 83 NRLEELSERFTNFLKNFTEFSDVLEFKDEQQSKPEYTELYYLWKLMNFIKENLRDHSTGYSRILPFEVDLMHVYSFDKVL 162 (915)
T ss_pred hHHHHHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccccccCCceEEEEHHHHHhhhHHH
Confidence 34469999999999999531 111 235689999999998763 79999999999999999
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHhh----CCCcccc--cceEEEEEccCCcccccccccccCCCcEEEEEEEEEEeccc
Q 002353 264 AIWLADAPQSVLEVMEDVARNVVFNL----HPNYKRI--HQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRTGV 337 (932)
Q Consensus 264 a~~L~~~P~~~L~if~~a~~evv~~~----~p~~~~i--~~~I~Vri~nlp~~~~iR~Lrs~~igkLV~V~GiVtr~s~V 337 (932)
+.+|+++|.++|++|++|+.+++..+ ++.+... ...++||+.|+|....+|+|++.++|+||+|+|+|+|+|.|
T Consensus 163 ~~~l~~~P~e~i~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~vr~~n~~~~~~iR~L~s~~i~kLV~v~GiV~r~S~v 242 (915)
T PTZ00111 163 YKLLVTFPADCIAELDKVLVKLFNELLSKHYSDLSLENNSFFPRARLMNKPVSDCVGNLEPSMADSLVQFSGTVVRQTWI 242 (915)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHhhcccccchhccccceEEEEEeCCCCCCCcccCCHhhCCCeEEEEEEEEEccCc
Confidence 99999999999999999999876543 3332211 12589999999999999999999999999999999999999
Q ss_pred ceeeeEEEEEcCCCCCccccccc----------cCcccccCCCCCCCCCCCceEEeecCceeeeeEEEEEeecCCCCCCC
Q 002353 338 FPQLQQVKYDCNKCGAILGPFFQ----------NSYSEVKVGSCPECQSKGPFTINIEQTIYRNYQKLTLQESPGIVPAG 407 (932)
Q Consensus 338 ~p~l~~~~f~C~~C~~~~~~~~q----------~~~~~~~p~~C~~C~s~~~f~~~~~~s~~~d~Q~i~iQE~~~~v~~G 407 (932)
+|+++.++|.|..|+.+..+.++ .......|..||.|+++++|.++.+.|.|+|||+|+|||+|+.+|+|
T Consensus 243 ~P~l~~a~f~C~~~~~~~~~~~~~C~~~~~~~~~~g~~~~P~~C~~C~~~~~f~l~~~~s~f~D~Q~IklQE~pe~vp~G 322 (915)
T PTZ00111 243 VPEITMACFRCRGQKKIGLNDYQPCTCEHYEYVIQGEVNEPLLCNECNSKYTFELNHNMCVYSTKKIVKLLQSNSSLNNP 322 (915)
T ss_pred chhhEEEEEECCCCCcccCCccccCCccccccccCCcccCCCCCCCCCCCCCeEEccCccEEEeeeEEEEeeCcccCCCC
Confidence 99999999999975543222221 11123368899999999999999999999999999999999999999
Q ss_pred CCC--------------------eEEEEEEeccccccCCCCCeEEEEEEEeecccCc-CCcCCCcceEEEEEEEeccccc
Q 002353 408 RLP--------------------RYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLS-LNTKNGFPVFATVVEANHITKK 466 (932)
Q Consensus 408 ~~P--------------------r~i~V~L~~dLvd~~~pGd~V~ItGI~~~~~~~~-~~~k~~~~vf~~~i~an~I~~~ 466 (932)
++| |+++|+|.+||||+|+|||+|+|||||+..+... ...+...++|.+|+.|++|+..
T Consensus 323 ~~P~~~~~~~~~~~~~~~~~~~~rsi~v~l~dDLVD~v~PGDrV~VtGIl~~~~~~~~~~~~~~~~~~~~yl~~~~i~~~ 402 (915)
T PTZ00111 323 DKDGLDNSVDNSGLNGEIYMKDNEVINLNLYDDLIDSVKTGDRVTVVGILKVTPIRTSTTRRTLKSLYTYFVNVIHVKVI 402 (915)
T ss_pred CCCccccccccccccccccccCCceEEEEEecchhccCCCCCEEEEEEEEEeccccccccccccccccceEEEEEEEEEe
Confidence 999 9999999999999999999999999999875321 1222334689999999999864
Q ss_pred ccc------------ccccccCHHHHHHHHHHhcChhhHHHHHHhhcccccChHHHHHHHhhhhhcCcccccc-----Cc
Q 002353 467 HDL------------FSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVK-----GK 529 (932)
Q Consensus 467 ~~~------------~~~~~lt~~d~~~i~~l~~~~~i~~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~-----~~ 529 (932)
+.. .....+|+++++.|++++++|++|+.|++||||+||||+.+|+||+|+|+||+.+... +|
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~t~ed~~~I~~ls~~p~i~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg 482 (915)
T PTZ00111 403 NSTNANQPEKGLKYLGNENDFSDLQVYKILELSRNPMIYRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDA 482 (915)
T ss_pred ccccccccccccccccccccCCHHHHHHHHHHhcCHHHHHHHHHHhCCeEECCHHHHHHHHHHHhcCCcccccccccccc
Confidence 321 1234699999999999999999999999999999999999999999999999876433 33
Q ss_pred ----ccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceee-cCcccchhhhccCceeccCCCeee
Q 002353 530 ----HRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVH-KDPVTREWTLEGGALVLADRGICL 604 (932)
Q Consensus 530 ----~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~-kd~~~g~~~le~Gal~lAd~GIl~ 604 (932)
+++||++||||+|+||||||++|+++|+++||++|++|.+.+.+|+++++. ++..+|+|.+++|++++|++|+||
T Consensus 483 ~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~ 562 (915)
T PTZ00111 483 CYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCC 562 (915)
T ss_pred ccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEE
Confidence 789999999999999999999999999999999999999999999999877 556689999999999999999999
Q ss_pred eccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecC
Q 002353 605 IDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKD 684 (932)
Q Consensus 605 IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D 684 (932)
||||++|++.+|.+||++||+|+|+|+|+|+.++++++|+|||||||..|+||+.+++.+|++|+++|||||||+|++.|
T Consensus 563 IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D 642 (915)
T PTZ00111 563 IDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLD 642 (915)
T ss_pred ecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHhHHHHHHHHhhccCCCCCCCCCCCCCc--cchh-hhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHH
Q 002353 685 VVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSK--NESE-EDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDM 761 (932)
Q Consensus 685 ~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~ 761 (932)
.+++..|..||.||++.|...|......+.... .... ..............|+.++|++||.|||++|+|.||++|.
T Consensus 643 ~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P~Ls~eA~ 722 (915)
T PTZ00111 643 HIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKLSDEAK 722 (915)
T ss_pred CCChHHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHHHhccCCCCCCHHHH
Confidence 999999999999999988654432100000000 0000 0000000111234589999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc------------------------cCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Q 002353 762 EKLTHVYAELRRES------------------------SHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIR 817 (932)
Q Consensus 762 ~~L~~~Y~~lR~~~------------------------~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~ 817 (932)
+.|.++|++||+.. ...+.+|+|+||||+|||||||||||+|+++|+.+||.+||+
T Consensus 723 ~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~ 802 (915)
T PTZ00111 723 KVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADALQAVQ 802 (915)
T ss_pred HHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHH
Confidence 99999999999842 123468999999999999999999999999999999999999
Q ss_pred HHHhhhhhh
Q 002353 818 VLLDSFIST 826 (932)
Q Consensus 818 l~~~S~~~~ 826 (932)
|+..|+.++
T Consensus 803 L~~~sl~~~ 811 (915)
T PTZ00111 803 IVKSSTFQS 811 (915)
T ss_pred HHHHHHhhh
Confidence 999998753
No 5
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=100.00 E-value=2.9e-112 Score=933.34 Aligned_cols=600 Identities=39% Similarity=0.599 Sum_probs=534.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHcCCcEEEEehhhHhccCHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q 002353 208 RRFIAKKFKEFLLTYVSPKSEQGDFEYVRLINEIVSANKCSLEIDYKQFIYIHPNIAIWLADAPQSVLEVMEDVARNVVF 287 (932)
Q Consensus 208 ~~~i~~~F~~FL~~f~~~~d~~g~~~Y~~~I~~m~~~~~~sl~Vd~~dL~~~~p~La~~L~~~P~~~L~if~~a~~evv~ 287 (932)
.+.++++|++|++.|. ..+.++|+++++.......++|+|++.||..|+..|+..|...|.++|++|++|+.++..
T Consensus 25 ~~~v~~~fkefir~f~----~~~~f~Yrd~L~~N~~~~~y~L~v~le~L~~fdedl~~~L~~~P~~~lp~fEeAa~~Vad 100 (729)
T KOG0481|consen 25 KSQVKTKFKEFIRQFR----TGTDFKYRDQLKRNYNLGEYSLEVELEDLISFDEDLADKLSKQPADHLPLFEEAAKEVAD 100 (729)
T ss_pred HHHHHHHHHHHHHHhc----cccccchHHHHHhcccccceEEEEEHHHhhccchHHHHHHHhChHhHHHHHHHHHHHHHh
Confidence 5788999999999995 344589999999999889999999999999999999999999999999999999999987
Q ss_pred hh---CCCcccccceEEEEEccCCcccccccccccCCCcEEEEEEEEEEecccceeeeEEEEEcCCCCCcccccccc-Cc
Q 002353 288 NL---HPNYKRIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRTGVFPQLQQVKYDCNKCGAILGPFFQN-SY 363 (932)
Q Consensus 288 ~~---~p~~~~i~~~I~Vri~nlp~~~~iR~Lrs~~igkLV~V~GiVtr~s~V~p~l~~~~f~C~~C~~~~~~~~q~-~~ 363 (932)
++ .|+-......|+|-+..-....+||+|++.|++|||+|.|+|+.+|.|..+.+.+...|.+|.++......+ +.
T Consensus 101 ~i~~~~~~~E~~~~d~Qv~L~sda~p~~iR~l~s~~vsklVki~GIiiaAS~v~~kat~l~l~CrnC~~t~~~~~~~pgl 180 (729)
T KOG0481|consen 101 EITRPRPSGEEVLHDIQVLLTSDANPISIRQLKSDHVSKLVKISGIIIAASAVSAKATRLSLVCRNCRHTRPNVIMRPGL 180 (729)
T ss_pred hhcCCCcCCCccceeeEEEEecCCCcccHhHhhhHhhhhheeeccEEEEeeeeeecceEEEEEeccccccccceecCCCc
Confidence 75 344444456789988888889999999999999999999999999999999999999999999876433221 21
Q ss_pred -ccccCCCCC-------CCCCCCceEEeecCceeeeeEEEEEeecCCCCCCCCCCeEEEEEEeccccccCCCCCeEEEEE
Q 002353 364 -SEVKVGSCP-------ECQSKGPFTINIEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTG 435 (932)
Q Consensus 364 -~~~~p~~C~-------~C~s~~~f~~~~~~s~~~d~Q~i~iQE~~~~v~~G~~Pr~i~V~L~~dLvd~~~pGd~V~ItG 435 (932)
...-|..|. .|.- .||.+.+++|.|+|+|.+||||.|+.||.|.+||++.+.+...|++++.||.+|+|+|
T Consensus 181 ~g~~lPR~C~~~~~~k~~Cp~-DPyii~pdks~~vD~QtLKLQE~pe~VP~GE~PRhl~L~~dRyL~~kvvPG~RvtI~G 259 (729)
T KOG0481|consen 181 EGYALPRKCDTPQAGKPKCPL-DPYIIMPDKSKCVDQQTLKLQELPEDVPVGEMPRHLQLFCDRYLTNKVVPGNRVTIMG 259 (729)
T ss_pred cccccccccCCcccCCCCCCC-CCEEEcccccceeehhheehhhCcccCCcCcCcchhhhhhhHHHhccccCCceEEEEE
Confidence 122466774 3653 5899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccCc--CCcCCCcceEEEEEEEecccccccc---ccccccCHHHHHHHHHHhcChhhHHHHHHhhcccccChHHH
Q 002353 436 IYTNNFDLS--LNTKNGFPVFATVVEANHITKKHDL---FSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDI 510 (932)
Q Consensus 436 I~~~~~~~~--~~~k~~~~vf~~~i~an~I~~~~~~---~~~~~lt~~d~~~i~~l~~~~~i~~~l~~siap~I~G~~~v 510 (932)
||......+ ...+.+-.+-..||.+..|+..... .....||+++.++|++|+..|++|+.|.+||||+|||++++
T Consensus 260 IYsI~~~~~~~~s~k~~v~iR~PyirVvGi~~ds~~ss~~~~~~ft~eEEEeFk~la~~~d~Ye~is~sIAPSIfG~~Di 339 (729)
T KOG0481|consen 260 IYSIKKFGSTSSSDKSGVGIRTPYIRVVGIQDDSEGSSRSSATMFTPEEEEEFKKLAASPDVYERISKSIAPSIFGHEDI 339 (729)
T ss_pred EEEeeeccccCCCCccceeeecceEEEEEEEeccCCccccCcccCChhHHHHHHHHhcCccHHHHHhhccCchhcCchhH
Confidence 998753222 1223333455668888888765432 12346999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhh
Q 002353 511 KTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTL 590 (932)
Q Consensus 511 K~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~l 590 (932)
|+||++.||||..|.+++|.+.||||||||.|||||+||||+|++.+.+|-++|++|+|+|++||||++.+|+.+.+|.+
T Consensus 340 KkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~RD~~tReFyl 419 (729)
T KOG0481|consen 340 KKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIRDPSTREFYL 419 (729)
T ss_pred HHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEecCCcceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCCh
Q 002353 591 EGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTD 670 (932)
Q Consensus 591 e~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~ 670 (932)
++||+|+||||||||||||||.++++.++|||||||+|||+|||+.++||+||+|+|||||++||||..++-.+|+++-+
T Consensus 420 EGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~ 499 (729)
T KOG0481|consen 420 EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMP 499 (729)
T ss_pred ecceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhh
Q 002353 671 PIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKL 750 (932)
Q Consensus 671 ~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~ 750 (932)
.+|||||+||+++|..++..|..||+||++.|....... . + ........|+.+.||+||.|||.
T Consensus 500 TILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~---~-----~--------~~~~~~~ei~~~~~KryI~YcR~ 563 (729)
T KOG0481|consen 500 TILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQ---T-----D--------SQEENEGEIPIEKLKRYIQYCRL 563 (729)
T ss_pred hHhhhccEEEEEeccCcchhhhHHHHHhhhhhccccccc---c-----C--------ccccCCCcccHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998532110 0 0 01224566899999999999999
Q ss_pred cCCCcCChhHHHHHHHHHHHHHhc-------ccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhh
Q 002353 751 NVFPRLHDPDMEKLTHVYAELRRE-------SSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSF 823 (932)
Q Consensus 751 ~~~P~Ls~ea~~~L~~~Y~~lR~~-------~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~ 823 (932)
+|.|.|+++|.++|.++|+.+|+. +....++|||+||||+|||++|++|||+|+..+|+.||.+|++||..|.
T Consensus 564 kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RLF~vST 643 (729)
T KOG0481|consen 564 KCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEALRLFQVST 643 (729)
T ss_pred ccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHhHhh
Confidence 999999999999999999999964 2234689999999999999999999999999999999999999999997
Q ss_pred hhhhh
Q 002353 824 ISTQK 828 (932)
Q Consensus 824 ~~~~k 828 (932)
+.+.-
T Consensus 644 mdAa~ 648 (729)
T KOG0481|consen 644 MDAAS 648 (729)
T ss_pred HHHHh
Confidence 76533
No 6
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-112 Score=965.55 Aligned_cols=602 Identities=36% Similarity=0.569 Sum_probs=549.6
Q ss_pred CceeeeecchhHHHHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHcCCcEEEEehhhHhccCHHHHHHHHHCHHHHH
Q 002353 196 GTLREWVTRDEVRRFIAKKFKEFLLTYVSPKSEQGDFEYVRLINEIVSANKCSLEIDYKQFIYIHPNIAIWLADAPQSVL 275 (932)
Q Consensus 196 ~~~~~w~~~~~~~~~i~~~F~~FL~~f~~~~d~~g~~~Y~~~I~~m~~~~~~sl~Vd~~dL~~~~p~La~~L~~~P~~~L 275 (932)
.-+..|.+...+ ++....|+.||+.|.. -.....+|+++|.+|.......+.+|..||..++..|+..++.+|.+++
T Consensus 119 ~~~~Iwgt~v~i-qe~~~~F~~fl~rf~~--~d~~~~~yi~~l~e~~~~~~~~ln~~~~hl~~~~~~Ly~ql~~ypqevi 195 (804)
T KOG0478|consen 119 PALVIWGTNVNI-QECPENFDDFLRRFRG--IDPLCPYYIKSLLELKELEPEFLNLDAEHLTDFDMDLYRQLVVYPQEVI 195 (804)
T ss_pred ceEEEEeeEEEH-HhhhhHHHHHHHhcCC--CCccchHHHHHHHHHHHhhhhhhhhhhhccccccHHHHHhhhhchHhhc
Confidence 468999999998 6788999999999952 2234688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcccccceEEEEEccCCcccccccccccCCCcEEEEEEEEEEecccceeeeEEEEEcCCCCCcc
Q 002353 276 EVMEDVARNVVFNLHPNYKRIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRTGVFPQLQQVKYDCNKCGAIL 355 (932)
Q Consensus 276 ~if~~a~~evv~~~~p~~~~i~~~I~Vri~nlp~~~~iR~Lrs~~igkLV~V~GiVtr~s~V~p~l~~~~f~C~~C~~~~ 355 (932)
++|+.++++++.+.|+.-. ....|+||..|+-++..+|+|+++.|+|||+|+|.|+|+|+|.|.++++.|+|..|++..
T Consensus 196 p~~d~t~~~~~~e~~~~~~-~~~~i~vRPfn~~~~~smr~lNp~dIDkLisI~GmViRss~vipem~~afFrC~vC~~~~ 274 (804)
T KOG0478|consen 196 PIFDETANEIVLERYVLEI-LEKSIKVRPFNAGKTFSMRNLNPNDIDKLISISGMVIRSSEVIPEMVEAFFRCSVCGHEI 274 (804)
T ss_pred ccchHHHHHHHHhhccccc-hhceeEeeccCcccccccccCChhhhhheEEeeeEEEecCCCCHHHHhHhhhhhhcCceE
Confidence 9999999999999986522 246899999999999999999999999999999999999999999999999999999987
Q ss_pred ccccccCcccccCCCCCCCCCCCceEEeecCceeeeeEEEEEeecCCCCCCCCCCeEEEEEEeccccccCCCCCeEEEEE
Q 002353 356 GPFFQNSYSEVKVGSCPECQSKGPFTINIEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTG 435 (932)
Q Consensus 356 ~~~~q~~~~~~~p~~C~~C~s~~~f~~~~~~s~~~d~Q~i~iQE~~~~v~~G~~Pr~i~V~L~~dLvd~~~pGd~V~ItG 435 (932)
......+ ....|..|+.|..++.|.+..+.|.|.|.|.|++||+|..+|.|.+|.++.|.|++||||+|+|||+|+|||
T Consensus 275 ~ve~drg-~i~eP~~C~~C~~~~~~~Lihnrs~F~dkQviklqEspd~~p~g~tPhtv~v~~~~dLVD~v~pGDrv~VTG 353 (804)
T KOG0478|consen 275 AVESDRG-RIKEPMLCKECGTTNSFQLLHNRSEFADKQVIKLQESPDDMPEGSTPHTVSVVLHNDLVDKVRPGDRVEVTG 353 (804)
T ss_pred EEEeecC-ccCCCcccccccCcccceeehhhhhhcccceeeeeeccccCcCCCCCceEEEEEehhhhhccCCCCeEEEEE
Confidence 6433333 345789999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccCcCCcCC--CcceEEEEEEEecccccccc-c-------cccccCHHHHHHHHHHhcChhhHHHHHHhhccccc
Q 002353 436 IYTNNFDLSLNTKN--GFPVFATVVEANHITKKHDL-F-------SAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIY 505 (932)
Q Consensus 436 I~~~~~~~~~~~k~--~~~vf~~~i~an~I~~~~~~-~-------~~~~lt~~d~~~i~~l~~~~~i~~~l~~siap~I~ 505 (932)
||+..+-. .|... -..+|.+||.+.|+.+.... . ....++.++++.|.++++.|++|+.|++||||+||
T Consensus 354 i~ra~p~r-~np~~r~vkSvyktyldvvh~rk~s~~rl~~~d~~d~~~~~~~~~~e~i~elskrpdiy~lLa~SiAPsIy 432 (804)
T KOG0478|consen 354 ILRATPVR-VNPRMRMVKSVYKTYLDVVHIRKASMKRLEGSDERDVDEVRRIEDLEKIQELSKRPDIYELLARSIAPSIY 432 (804)
T ss_pred EEEeEEec-cCcchhhHHHHHHHHhHhhhhhhhhhhhccccccccccccccHHHHHHHHHHhcCccHHHHHHHhhchhhh
Confidence 99987632 22222 23689999999999876541 1 12346677799999999999999999999999999
Q ss_pred ChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCccc
Q 002353 506 GHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVT 585 (932)
Q Consensus 506 G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~ 585 (932)
||+++|+||+|+||||+.+....+.+.||+|||||||||||||||||+++++++||++|++|+|++++|||+++.+++.|
T Consensus 433 e~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dt 512 (804)
T KOG0478|consen 433 ELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDT 512 (804)
T ss_pred cccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCcc
Confidence 99999999999999999998887778999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccc
Q 002353 586 REWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSEN 665 (932)
Q Consensus 586 g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~n 665 (932)
++|.++.|||+++|+|||||||||||+...|..|||+||||+++|+|||+.++||+||+||||+||..++||+.++..+|
T Consensus 513 kqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eN 592 (804)
T KOG0478|consen 513 RQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIEN 592 (804)
T ss_pred ceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHH
Q 002353 666 VELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYI 745 (932)
Q Consensus 666 i~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI 745 (932)
|+|+++|||||||+|++.|.+|+..|+.|+.||+..|..... ......|+..+|+.||
T Consensus 593 I~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~----------------------~~~~~~~d~~~lr~yi 650 (804)
T KOG0478|consen 593 INLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGE----------------------KQGSEAIDMNLLRDYI 650 (804)
T ss_pred cCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccc----------------------cchhHHHhHHHHHHHH
Confidence 999999999999999999999999999999999999864321 1112357889999999
Q ss_pred HHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhhhh
Q 002353 746 TYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSFIS 825 (932)
Q Consensus 746 ~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~~~ 825 (932)
.||+++++|.++++|.+.+..+|++||+.....+.+..|+||||+|||++||||||++++.|...||.+|+++..+++.+
T Consensus 651 ~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~l~R~aL~~ 730 (804)
T KOG0478|consen 651 RYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQITATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVRLLREALKQ 730 (804)
T ss_pred HHHhccCCccccHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHhcc
Confidence 99999999999999999999999999998876656778999999999999999999999999999999999999998765
No 7
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=100.00 E-value=1.3e-110 Score=931.10 Aligned_cols=612 Identities=36% Similarity=0.536 Sum_probs=538.8
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHcCCcEEEEehhhHhccCHHHHHHHHHCHHHHHHHHHHHHHH
Q 002353 205 DEVRRFIAKKFKEFLLTYVSPKSEQGDFEYVRLINEIVSANKCSLEIDYKQFIYIHPNIAIWLADAPQSVLEVMEDVARN 284 (932)
Q Consensus 205 ~~~~~~i~~~F~~FL~~f~~~~d~~g~~~Y~~~I~~m~~~~~~sl~Vd~~dL~~~~p~La~~L~~~P~~~L~if~~a~~e 284 (932)
+..-+++.+.|.+||.++. ....|.+.|..|.+.+...|.||++||..+++.+|.-|+.+|.+.++.|+.|+.+
T Consensus 7 d~~~~e~~r~f~efLd~~~------D~~iy~e~i~~~~~~~~~RlIvNv~dlr~~~~~~A~glL~~p~~~~~~f~~AL~~ 80 (818)
T KOG0479|consen 7 DARFRERVRDFIEFLDDEE------DADIYQEAIKKLLNEGQHRLIVNVDDLREFNRERASGLLENPAEEVPPFEDALTD 80 (818)
T ss_pred HHHHHHHHHHHHHHhcchh------hhhHHHHHHHHhhhcCcceEEEEhHHHHHhHHHHHHhHhhChHhhhhhHHHHHHH
Confidence 4445677788888888763 3458999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCcccccceEEEEEccCCc--ccccccccccCCCcEEEEEEEEEEecccceeeeEEEEEcCCCCCccccccccC
Q 002353 285 VVFNLHPNYKRIHQKIYVRITNLPV--YDQIRNIRQIHLNTMIRIGGVVTRRTGVFPQLQQVKYDCNKCGAILGPFFQNS 362 (932)
Q Consensus 285 vv~~~~p~~~~i~~~I~Vri~nlp~--~~~iR~Lrs~~igkLV~V~GiVtr~s~V~p~l~~~~f~C~~C~~~~~~~~q~~ 362 (932)
++..+.|.|...+..++|.|.+... ...+|.|.+.++|+||||+|+||++|-|+|++.+.+..|+..+.....-|.+.
T Consensus 81 ~~~~~d~~~~~~~~~~~vGfeGsFG~~hv~PRtL~s~~lg~mVcvEGIVTkcSlvRPKvvkSVHYcpaT~~~~~r~Y~D~ 160 (818)
T KOG0479|consen 81 AASRIDDVYAKVKELFFVGFEGSFGNRHVNPRTLTSVYLGKMVCVEGIVTKCSLVRPKVVKSVHYCPATNKFHERDYRDA 160 (818)
T ss_pred HHhcccchhhhhccceEEEeeeeccccccChhhHHHHHhCceEEeeeeeeeeeeechhhhheeeeccccCcchhhhhcch
Confidence 9999888888878899999988754 57899999999999999999999999999999999999999887654444332
Q ss_pred ccc---ccCCCCCCC-CCCCceEEeecCceeeeeEEEEEeecCCCCCCCCCCeEEEEEEeccccccCCCCCeEEEEEEEe
Q 002353 363 YSE---VKVGSCPEC-QSKGPFTINIEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYT 438 (932)
Q Consensus 363 ~~~---~~p~~C~~C-~s~~~f~~~~~~s~~~d~Q~i~iQE~~~~v~~G~~Pr~i~V~L~~dLvd~~~pGd~V~ItGI~~ 438 (932)
... ..+..-|.- ...+++......|+|.|+|.|+|||.|+..|+|++||+++|+|.+||||+|||||+|.|.|||+
T Consensus 161 T~~~~~p~~svYPT~De~gN~L~TEyGlS~ykDHQtitiQEmPE~APaGQLPRSVDvilddDLVD~~KPGDRV~ivG~yr 240 (818)
T KOG0479|consen 161 TMLTTLPTGSVYPTRDEDGNLLETEYGLSVYKDHQTITIQEMPEKAPAGQLPRSVDVILDDDLVDRVKPGDRVNIVGIYR 240 (818)
T ss_pred heecccccCCcCCccCCCCCeeeEeecceeeecccEEEeeeccccCCCCCCCcceeEEecccccccCCCCCeeEEEEEEe
Confidence 111 111222321 2245778888999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCcCCcCCCcceEEEEEEEeccccccccccccccCHHHHHHHHHHhcChhhHHHHHHhhcccccChHHHHHHHhhhh
Q 002353 439 NNFDLSLNTKNGFPVFATVVEANHITKKHDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTALALSM 518 (932)
Q Consensus 439 ~~~~~~~~~k~~~~vf~~~i~an~I~~~~~~~~~~~lt~~d~~~i~~l~~~~~i~~~l~~siap~I~G~~~vK~aillaL 518 (932)
..+..+. .+....|.|+|-||+|....+. ....++.+|+..|++|++..++|+.|+.|+||+||||+.+|+||+|.|
T Consensus 241 ~Lp~k~~--g~tsg~FRTvliaNni~~l~ke-~~~~~t~~Di~~i~klsk~kdiFdlLa~SLAPSI~GH~~vKkAillLL 317 (818)
T KOG0479|consen 241 SLPGKSN--GNTSGTFRTVLIANNIELLSKE-AAPDFTDEDIRNIKKLSKKKDIFDLLARSLAPSIYGHDYVKKAILLLL 317 (818)
T ss_pred eccCccC--CcccceeEEEEEeccHHhhccc-ccccCChhhHHHHHHHHhcCCHHHHHhhccCcccccHHHHHHHHHHHH
Confidence 8653221 1223579999999999887664 356799999999999999999999999999999999999999999999
Q ss_pred hcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceecc
Q 002353 519 FGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLA 598 (932)
Q Consensus 519 ~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lA 598 (932)
+||+.|++.+|.++||||||||+|+|.|+||||+|||-+.+|+++-++|.|+|.+||||+++.|..||+..+++||+|+|
T Consensus 318 lGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD~eTGERRLEAGAMVLA 397 (818)
T KOG0479|consen 318 LGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLA 397 (818)
T ss_pred hccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEeeccccchhhhhcCceEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccE
Q 002353 599 DRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDV 678 (932)
Q Consensus 599 d~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDl 678 (932)
|+||+||||||||++.+|++|||+||||+++|+||||.++||+||+||||+||++|+|+..++..+||.|+..|||||||
T Consensus 398 DRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDL 477 (818)
T KOG0479|consen 398 DRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDL 477 (818)
T ss_pred cCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhhhcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCChhHhHHHHHHHHhhccCCCCCCC---CC------CCCCccchhhh----------hh--hhcccCCCCCCC
Q 002353 679 LCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGV---NL------DDKSKNESEED----------IQ--VADREIDPEILP 737 (932)
Q Consensus 679 i~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~---~~------~~~~~~~~~~~----------~~--~~~~~~~~~~i~ 737 (932)
+|++.|..|...|..+++|||..|....|... .. ..-...+.++. .+ ........++++
T Consensus 478 lFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg~~k~~~~k~lt 557 (818)
T KOG0479|consen 478 LFVVLDDIDADIDRMISEHVLRMHRYLTPGEEDGEPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHGKAKQQHEKLLT 557 (818)
T ss_pred EEEEeccccchHHHHHHHHHHHHhhccCCcccCCCcccCCCcccccccccccccccchhHhhhhhhhhccccccccceee
Confidence 99999999999999999999999965544311 00 00000000000 01 112245677899
Q ss_pred HHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhccc---CCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHH
Q 002353 738 QDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESS---HGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNM 814 (932)
Q Consensus 738 ~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~---~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~ 814 (932)
.+|+||||.|||..++|+|+++|.+.|.+.|..||.... .....|+|.|+||.|||||.||||++|+..|+.+|+..
T Consensus 558 i~F~rKYIhyAk~ri~P~Lt~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRlSk~V~~~DAe~ 637 (818)
T KOG0479|consen 558 IDFMRKYIHYAKSRIKPKLTQEAAEYIAEEYTDLRNDDSRKDQERTSPITARTLETLIRLATAHAKARLSKVVEKDDAEA 637 (818)
T ss_pred HHHHHHHHHHHHhhcCccccHHHHHHHHHHHhhhhccccccccccccCCcHHHHHHHHHHHHHHHHhhhcceeehhhHHH
Confidence 999999999999999999999999999999999998764 24688999999999999999999999999999999999
Q ss_pred HHHHHHhhhhh
Q 002353 815 AIRVLLDSFIS 825 (932)
Q Consensus 815 AI~l~~~S~~~ 825 (932)
|+.|+..+++.
T Consensus 638 A~~Ll~fA~f~ 648 (818)
T KOG0479|consen 638 AVNLLRFALFK 648 (818)
T ss_pred HHHHHHHHHHh
Confidence 99999988775
No 8
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=100.00 E-value=6e-111 Score=922.13 Aligned_cols=611 Identities=34% Similarity=0.554 Sum_probs=527.4
Q ss_pred HHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHcCCcEEEEehhhHhccCH--HHHHHHHHCHHHHHHHHHHHHHHHHHhh
Q 002353 212 AKKFKEFLLTYVSPKSEQGDFEYVRLINEIVSANKCSLEIDYKQFIYIHP--NIAIWLADAPQSVLEVMEDVARNVVFNL 289 (932)
Q Consensus 212 ~~~F~~FL~~f~~~~d~~g~~~Y~~~I~~m~~~~~~sl~Vd~~dL~~~~p--~La~~L~~~P~~~L~if~~a~~evv~~~ 289 (932)
+++.+.||.+|. +.+...+|++++.++...+..+++||++||..++. .|...+..+...+..+|..++.+.+...
T Consensus 14 k~~~~~fl~e~~---e~~~~~kY~~~L~eia~Re~~ai~vdldDi~~~d~~~~l~~~i~~Na~ry~~lf~~~vdellp~~ 90 (721)
T KOG0482|consen 14 KNKIKKFLDEFY---EDNELGKYMNQLQEIANREQNAIEVDLDDIAEYDDATELVGAIESNARRYVELFSDAVDELLPEP 90 (721)
T ss_pred hHHHHHHHHhhh---ccCchhHHHHHHHHHhcccceeEEEehHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 457788888886 44555699999999999999999999999999973 4888999999999999998887764321
Q ss_pred -------------------------CCCccc--------ccceEEEEEcc--CCcccccccccccCCCcEEEEEEEEEEe
Q 002353 290 -------------------------HPNYKR--------IHQKIYVRITN--LPVYDQIRNIRQIHLNTMIRIGGVVTRR 334 (932)
Q Consensus 290 -------------------------~p~~~~--------i~~~I~Vri~n--lp~~~~iR~Lrs~~igkLV~V~GiVtr~ 334 (932)
.|.... +.+...+-|.. -.....+|++++.|+|+||+|+|+|||+
T Consensus 91 ~~~~~~~~d~lDv~~~qR~~~~~~~~p~~~~~~~~fP~~l~rryelyfk~~~~~kp~svR~vka~~iG~LvtvrGIVTR~ 170 (721)
T KOG0482|consen 91 TGEIPYGDDVLDVYMEQRLMRNETRDPELEDKREQFPSELLRRYELYFKPLSNNKPYSVREVKADHIGSLVTVRGIVTRV 170 (721)
T ss_pred ccccccCccHHHHHHHHHHHhccccCccccchhhcCCHHHhhhheeeecccccCCccchhhhhhhhccceEEEEEEEEec
Confidence 111000 00111222222 2235789999999999999999999999
Q ss_pred cccceeeeEEEEEcCCCCCcccccccc--CcccccCCCCCC--CC---CCCceEEeecCceeeeeEEEEEeecCCCCCCC
Q 002353 335 TGVFPQLQQVKYDCNKCGAILGPFFQN--SYSEVKVGSCPE--CQ---SKGPFTINIEQTIYRNYQKLTLQESPGIVPAG 407 (932)
Q Consensus 335 s~V~p~l~~~~f~C~~C~~~~~~~~q~--~~~~~~p~~C~~--C~---s~~~f~~~~~~s~~~d~Q~i~iQE~~~~v~~G 407 (932)
|.|+|.+.+++|.|..||+.. ||. +..+.++..||+ |+ ++|.+.+....|+|+.||++++||..++||.|
T Consensus 171 S~VKP~m~VatYtCd~CGaE~---yQeV~s~~F~pl~~CpS~eC~~n~~~G~L~lqtRgSKFikfQe~kmQEls~qVPvG 247 (721)
T KOG0482|consen 171 SDVKPSMVVATYTCDQCGAET---YQEVNSRTFTPLSECPSEECRTNKAGGRLYLQTRGSKFIKFQEVKMQELSDQVPVG 247 (721)
T ss_pred cccccceEEEEEecccccHhh---hccccCccccchhhCChHHhhhcccCCeEEEEecccccchhhhhhHHHHhccCCCC
Confidence 999999999999999999874 332 334557788996 84 46778899999999999999999999999999
Q ss_pred CCCeEEEEEEeccccccCCCCCeEEEEEEEeecccCcCCc-CCCcceEEEEEEEeccccccccccccccCHHHHHHHHHH
Q 002353 408 RLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNT-KNGFPVFATVVEANHITKKHDLFSAYKLTQEDKEEIEKL 486 (932)
Q Consensus 408 ~~Pr~i~V~L~~dLvd~~~pGd~V~ItGI~~~~~~~~~~~-k~~~~vf~~~i~an~I~~~~~~~~~~~lt~~d~~~i~~l 486 (932)
.+||++.|.+.+.++.+|.|||.|.|+||+.+........ +.| -+-.||++|.+|...++.+...+++.+...++.++
T Consensus 248 ~IPRsltv~~~ge~tr~~~PGDvV~vsGiFLP~pytGfr~~~aG-LladtYLeAh~v~~~nk~~~~~~~~~~~~~~~~~~ 326 (721)
T KOG0482|consen 248 HIPRSLTVHVYGEMTRKCQPGDVVVVSGIFLPIPYTGFRALKAG-LLADTYLEAHRVVQINKKYDNIEKTGELEPEELEL 326 (721)
T ss_pred ccCceeEEEEecccceecCCCCEEEEeeeecccchhhHHHHHhh-hHHHHHHHHhhhhhhccccccccccccccHHHHHH
Confidence 9999999999999999999999999999998864322111 112 35579999999888777677777777777778888
Q ss_pred hcChhhHHHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEec
Q 002353 487 AKDPRIGERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTT 566 (932)
Q Consensus 487 ~~~~~i~~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~ 566 (932)
.+..++|++|+.||||.||||++||+|++|.|+||+.+.+.+|++|||||||||+||||++||||++++.+++||++|++
T Consensus 327 ~~~~d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTT 406 (721)
T KOG0482|consen 327 IAEGDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTT 406 (721)
T ss_pred hhcccHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceec
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEE
Q 002353 567 GKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVI 646 (932)
Q Consensus 567 g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sII 646 (932)
|+|+|.+||||++.+|+.||+.++++|||++||+|||||||||||.+.+|++|||+||||+|||+||||.++||+||+|+
T Consensus 407 GrGSSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sIL 486 (721)
T KOG0482|consen 407 GRGSSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSIL 486 (721)
T ss_pred CCCCCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhh
Q 002353 647 AAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQV 726 (932)
Q Consensus 647 AAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~ 726 (932)
|||||.+||||+..+..+||+||.+||||||+++++.|.|+.+.|..||+||...|+...++
T Consensus 487 aAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp------------------ 548 (721)
T KOG0482|consen 487 AAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQP------------------ 548 (721)
T ss_pred hhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCC------------------
Confidence 99999999999999999999999999999999999999999999999999999999876543
Q ss_pred hcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCC-CcccCHHHHHHHHHHHHHHHHhhCCC
Q 002353 727 ADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQ-GVPIAVRHIESMIRMSEAHARMRLRQ 805 (932)
Q Consensus 727 ~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~-~~pitvR~LEslIRlAeA~Akl~lr~ 805 (932)
..+.++|+.+++|.||.+||+ ..|.++++..++|...|++||+++.+.. ....|+|.|-+|+|||.|+|||+|++
T Consensus 549 ---~~~fepl~~~~mR~yI~~ak~-~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~ 624 (721)
T KOG0482|consen 549 ---PLDFEPLDPNLMRRYISLAKR-KNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSD 624 (721)
T ss_pred ---CccCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhcc
Confidence 133467999999999999997 6999999999999999999999986442 33578999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHhhhhcchhhhHHHHHHHHHHHHH
Q 002353 806 HVTQEDVNMAIRVLLDSFISTQKFGVQKALQRSFRKYMTFKKEYNALLLDLLRELVK 862 (932)
Q Consensus 806 ~Vt~~Dv~~AI~l~~~S~~~~~k~s~~~~l~~~f~~~~~~~~~~~~~l~~~l~~~~~ 862 (932)
.|.++||++|++||+.| |.|+... .. + ..+......++.++|+|..
T Consensus 625 ~V~~~DV~EALRLme~s-----K~sL~~~-~~--~---~~~~~~~~~if~iirel~~ 670 (721)
T KOG0482|consen 625 SVEEDDVNEALRLMEMS-----KDSLYQD-DG--Q---KEDTSATDAIFAIIRELAG 670 (721)
T ss_pred ccchhhHHHHHHHHHhh-----hcccccc-cc--c---ccccchHHHHHHHHHHHHh
Confidence 99999999999999988 5544422 00 0 1122235667888888876
No 9
>smart00350 MCM minichromosome maintenance proteins.
Probab=100.00 E-value=2.7e-94 Score=846.99 Aligned_cols=495 Identities=57% Similarity=0.909 Sum_probs=452.9
Q ss_pred ccccccccccCCCcEEEEEEEEEEecccceeeeEEEEEcCCCCCccccccccCcccccCCCCCC--CCCCCceEEeecCc
Q 002353 310 YDQIRNIRQIHLNTMIRIGGVVTRRTGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPE--CQSKGPFTINIEQT 387 (932)
Q Consensus 310 ~~~iR~Lrs~~igkLV~V~GiVtr~s~V~p~l~~~~f~C~~C~~~~~~~~q~~~~~~~p~~C~~--C~s~~~f~~~~~~s 387 (932)
..++|+|++.++||||+|+|+|+|+|.|+|+++++.|.|.+||+.+...++. .....|..||+ |+++++|.++.+.|
T Consensus 2 ~~~~r~l~s~~igklV~v~GiV~r~s~v~p~~~~~~f~C~~C~~~~~~~~~~-~~~~~p~~C~~~~C~~~~~f~l~~~~s 80 (509)
T smart00350 2 PSSIRELRADHLGKLVRVSGIVTRTSGVRPKLKRASFTCEKCGATLGPEIQS-GRETEPTVCPPRECQSPTPFSLNHERS 80 (509)
T ss_pred CCCcccCCHhHCCCEEEEEEEEEEccCceEEEEEEEEEecCCCCEEeEEecC-CcccCCCcCCCCcCCCCCceEeccCCC
Confidence 3578999999999999999999999999999999999999999987655544 34567899998 99988999999999
Q ss_pred eeeeeEEEEEeecCCCCCCCCCCeEEEEEEeccccccCCCCCeEEEEEEEeec-ccCcCCcCCCcceEEEEEEEeccccc
Q 002353 388 IYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNN-FDLSLNTKNGFPVFATVVEANHITKK 466 (932)
Q Consensus 388 ~~~d~Q~i~iQE~~~~v~~G~~Pr~i~V~L~~dLvd~~~pGd~V~ItGI~~~~-~~~~~~~k~~~~vf~~~i~an~I~~~ 466 (932)
.|+|||+|+|||.|+.+|+|++||+++|+|++||||+|+|||+|+|||||+.. +....+..+++++|.+|++|++|++.
T Consensus 81 ~~~D~Q~I~iQE~~e~~p~G~~Prsi~v~l~~dLvd~~~PGD~V~i~Gi~~~~~~~~~~~~~~~~~~~~~~l~a~~i~~~ 160 (509)
T smart00350 81 TFIDFQKIKLQESPEEVPAGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNIPYGFKLNTVKGLPVFATYIEANHVRKL 160 (509)
T ss_pred eEEEEEEEEEEcCcccCCCCCCCcEEEEEEcccccCcccCCCEEEEEEEEEeeccccccccCCCcceeeEEEEEeEEEEc
Confidence 99999999999999999999999999999999999999999999999999986 44333444566789999999999876
Q ss_pred ccc--cc-----ccccCHHHHHHHHHHhcChhhHHHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEE
Q 002353 467 HDL--FS-----AYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVL 539 (932)
Q Consensus 467 ~~~--~~-----~~~lt~~d~~~i~~l~~~~~i~~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvL 539 (932)
+.. +. ...+|+++++.|.+++++|++|+.|++||||.|+||+.+|+|++++|+||..+...+|.++||++|||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vL 240 (509)
T smart00350 161 DYKRSFEDCSFSVQSLSDEEEEEIRKLSKDPDIYERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINIL 240 (509)
T ss_pred cccccccccccccccCCHHHHHHHHHHhcCHHHHHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEE
Confidence 432 11 13589999999999999999999999999999999999999999999999988888889999999999
Q ss_pred EeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcchhhhH
Q 002353 540 LLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSI 619 (932)
Q Consensus 540 LvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L 619 (932)
|+|+||||||++|++++++++++.|++|.+++.+||+++..+++.+|+|.+++|++++|++|+||||||++|++..|.+|
T Consensus 241 L~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L 320 (509)
T smart00350 241 LLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDSDRTAI 320 (509)
T ss_pred EeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhhCCHHHHHHH
Confidence 99999999999999999999999999999899999999988998899999999999999999999999999999999999
Q ss_pred HHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHH
Q 002353 620 HEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVI 699 (932)
Q Consensus 620 ~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl 699 (932)
+++||+|++++.|+|+..+++++|+||||+||..|+|++.+++.+|+.|++++||||||+|++.|.++++.|.+|++|++
T Consensus 321 ~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 321 HEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred HHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCC-
Q 002353 700 DSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHG- 778 (932)
Q Consensus 700 ~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~- 778 (932)
+.|....+.. .......++.++|++||.|||+++.|.+|+++.++|.++|.++|+.....
T Consensus 401 ~~~~~~~~~~-------------------~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~ 461 (509)
T smart00350 401 DLHRYSHPEP-------------------DEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSE 461 (509)
T ss_pred HhhcccCccc-------------------cccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccc
Confidence 9886443310 01112468999999999999988999999999999999999999876433
Q ss_pred --CCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhhh
Q 002353 779 --QGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSFI 824 (932)
Q Consensus 779 --~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~~ 824 (932)
..+++|+|+|++|||+|+|+|||++|++|+.+||.+|++|+..|++
T Consensus 462 ~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~~s~~ 509 (509)
T smart00350 462 ARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRESII 509 (509)
T ss_pred cccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHHhhC
Confidence 4689999999999999999999999999999999999999999864
No 10
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=100.00 E-value=3.1e-72 Score=626.86 Aligned_cols=329 Identities=55% Similarity=0.898 Sum_probs=273.0
Q ss_pred HHHHHHHHhcChhhHHHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHh
Q 002353 479 DKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 479 d~~~i~~l~~~~~i~~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~ 558 (932)
|++.|.+++++|++|+.|++||||+|||++.+|+||+|+|+||+.+..++|.++||+|||||+|+||||||+|+++++++
T Consensus 1 d~~~i~~l~~~~~~~~~l~~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~ 80 (331)
T PF00493_consen 1 DEEKIKELSKKPNIFDRLANSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKL 80 (331)
T ss_dssp THHHHHCCCCTTTHHHCCHHHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT
T ss_pred CHHHHHHHhcCCcHHHHHHHHhCCcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhh
Confidence 46889999999999999999999999999999999999999999998888888999999999999999999999999999
Q ss_pred CCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEe
Q 002353 559 GQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTS 638 (932)
Q Consensus 559 ~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~ 638 (932)
+||++|++|.+++.+|||+++.+++.+++|.+++|++++|++||||||||++|+.+++.+||++||||+|+|+|+|++++
T Consensus 81 ~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~ 160 (331)
T PF00493_consen 81 APRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTT 160 (331)
T ss_dssp -SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEE
T ss_pred CCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCcc
Q 002353 639 LQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKN 718 (932)
Q Consensus 639 l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~ 718 (932)
++++|+|+||+||..|+|++.+++.+|++++++|||||||+|++.|.++++.|..+|+||+..|....+.. ..
T Consensus 161 l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~---~~---- 233 (331)
T PF00493_consen 161 LNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSK---EK---- 233 (331)
T ss_dssp EE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S------------
T ss_pred ccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEeccccccccc---cc----
Confidence 99999999999999999999999999999999999999999999999999999999999999987654310 00
Q ss_pred chhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhccc-CCCCcccCHHHHHHHHHHHHH
Q 002353 719 ESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESS-HGQGVPIAVRHIESMIRMSEA 797 (932)
Q Consensus 719 ~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~-~~~~~pitvR~LEslIRlAeA 797 (932)
........|+.++|++||.|||++++|.|+++|.+.|.+||+.+|+... .....|+|+|+||+|||||+|
T Consensus 234 ---------~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA 304 (331)
T PF00493_consen 234 ---------KIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEA 304 (331)
T ss_dssp ------------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHH
T ss_pred ---------cccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHH
Confidence 0011124689999999999999889999999999999999999999873 356889999999999999999
Q ss_pred HHHhhCCCCcCHHHHHHHHHHHHhhh
Q 002353 798 HARMRLRQHVTQEDVNMAIRVLLDSF 823 (932)
Q Consensus 798 ~Akl~lr~~Vt~~Dv~~AI~l~~~S~ 823 (932)
||||+||++|+.+||.+||+|++.|+
T Consensus 305 ~AKl~lr~~V~~~Dv~~Ai~L~~~Sl 330 (331)
T PF00493_consen 305 HAKLRLRDEVTEEDVEEAIRLFEESL 330 (331)
T ss_dssp HHHCTTSSECSHHHHHHHHHHHHHHH
T ss_pred HHHHhccCceeHHHHHHHHHHHHhhc
Confidence 99999999999999999999999986
No 11
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.92 E-value=1.8e-25 Score=253.93 Aligned_cols=285 Identities=19% Similarity=0.231 Sum_probs=212.5
Q ss_pred cCCceEEEeCCCCchHHHHHHHHHHhCCCcE---EecCCCcccc----cccceeecCcccchhhh-ccCceeccCCCeee
Q 002353 533 RGDINVLLLGDPGTAKSQFLKYVEKTGQRAV---YTTGKGASAV----GLTAAVHKDPVTREWTL-EGGALVLADRGICL 604 (932)
Q Consensus 533 RgdinvLLvGdPGTGKS~Lak~va~~~~r~v---~~~g~~ss~~----gLta~v~kd~~~g~~~l-e~Gal~lAd~GIl~ 604 (932)
+.|++|||.|++||||..||+++|+.++|.. .....++-.. ...++..+.++||.-.- ++|.+.+|++|++|
T Consensus 266 ~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLF 345 (560)
T COG3829 266 KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLF 345 (560)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEE
Confidence 3466999999999999999999999999862 2211111111 12334556677776544 89999999999999
Q ss_pred eccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecC
Q 002353 605 IDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKD 684 (932)
Q Consensus 605 IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D 684 (932)
||||+.||...|.+|+.+++.++ |.+-|.....+.+++||||||..........+| |-||+|.+
T Consensus 346 LDEIgempl~LQaKLLRVLQEke--i~rvG~t~~~~vDVRIIAATN~nL~~~i~~G~F------------ReDLYYRL-- 409 (560)
T COG3829 346 LDEIGEMPLPLQAKLLRVLQEKE--IERVGGTKPIPVDVRIIAATNRNLEKMIAEGTF------------REDLYYRL-- 409 (560)
T ss_pred ehhhccCCHHHHHHHHHHHhhce--EEecCCCCceeeEEEEEeccCcCHHHHHhcCcc------------hhhheeee--
Confidence 99999999999999999999998 567899999999999999999987666666666 88898887
Q ss_pred CCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHH
Q 002353 685 VVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEK 763 (932)
Q Consensus 685 ~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~ 763 (932)
.|+..+..+.. .+.+|++.|...+|.+|-. |.+ ..+.|+++|...
T Consensus 410 ------------NV~~i~iPPLR--------------------eR~eDI~~L~~~Fl~k~s~~~~~--~v~~ls~~a~~~ 455 (560)
T COG3829 410 ------------NVIPITIPPLR--------------------ERKEDIPLLAEYFLDKFSRRYGR--NVKGLSPDALAL 455 (560)
T ss_pred ------------ceeeecCCCcc--------------------cCcchHHHHHHHHHHHHHHHcCC--CcccCCHHHHHH
Confidence 45555554333 2356667778888888876 554 256799999999
Q ss_pred HHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHH-HHHHHHHhhhhhhhhhchHHHHHHHHhhh
Q 002353 764 LTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVN-MAIRVLLDSFISTQKFGVQKALQRSFRKY 842 (932)
Q Consensus 764 L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~-~AI~l~~~S~~~~~k~s~~~~l~~~f~~~ 842 (932)
|.+| .||+|+|+|+++|..+.-. +.-...|+..|+. .++..- ..-.++ . -
T Consensus 456 L~~y------------~WPGNVRELeNviER~v~~--~~~~~~I~~~~lp~~~l~~k-~~~~~~-------------~-~ 506 (560)
T COG3829 456 LLRY------------DWPGNVRELENVIERAVNL--VESDGLIDADDLPAFALEEK-EPRPET-------------T-K 506 (560)
T ss_pred HHhC------------CCCchHHHHHHHHHHHHhc--cCCcceeehhhcchhhhccc-ccCcCc-------------c-c
Confidence 9998 9999999999999876542 3334457777765 332221 000000 0 0
Q ss_pred hcchhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHhcCcc
Q 002353 843 MTFKKEYNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQELEIY 900 (932)
Q Consensus 843 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~i~ 900 (932)
.....+..+.+....+.+|.++|..++.+.. .+++.++|+..+|++|+++|++.
T Consensus 507 ~~~~~~l~~~~e~~Ek~~I~~aL~~~~gn~~----~aAk~LgIsrttL~rKlkk~~l~ 560 (560)
T COG3829 507 QIEVGSLKEALEEYEKHLIREALERHGGNKS----KAAKELGISRTTLYRKLKKYGLR 560 (560)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHHhCCCHHHHHHHHHHhcCC
Confidence 1223456677888999999999998776555 67899999999999999999973
No 12
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.92 E-value=5.6e-24 Score=256.97 Aligned_cols=266 Identities=25% Similarity=0.274 Sum_probs=203.7
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCC--------------------
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQR-------------------- 561 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r-------------------- 561 (932)
..|+||+.+|++++++++.+. . | +|||.|+||||||++++++++++|.
T Consensus 4 ~~ivGq~~~~~al~~~av~~~-----~-----g--~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~ 71 (633)
T TIGR02442 4 TAIVGQEDLKLALLLNAVDPR-----I-----G--GVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWC 71 (633)
T ss_pred chhcChHHHHHHHHHHhhCCC-----C-----C--eEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccC
Confidence 468999999999999998651 1 1 7999999999999999999999862
Q ss_pred ---------------cEEecCCCcccccccceeec--CcccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHh
Q 002353 562 ---------------AVYTTGKGASAVGLTAAVHK--DPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAME 624 (932)
Q Consensus 562 ---------------~v~~~g~~ss~~gLta~v~k--d~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamE 624 (932)
.+.....+.+...|++++.- ...+|.+...+|.|..|++|||||||+++|++..+..|+++|+
T Consensus 72 ~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le 151 (633)
T TIGR02442 72 EECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAA 151 (633)
T ss_pred hhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHh
Confidence 11112222233333333211 1124567788999999999999999999999999999999999
Q ss_pred hceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccC
Q 002353 625 QQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFK 704 (932)
Q Consensus 625 qq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~ 704 (932)
++.+.+.+.|....+++++.+|||+||..| .|+++|++||++.+.+....+......+..+.+.....
T Consensus 152 ~g~~~v~r~g~~~~~~~~~~lIat~np~eg------------~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~ 219 (633)
T TIGR02442 152 MGVNRVEREGLSVSHPARFVLIGTMNPEEG------------DLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDAD 219 (633)
T ss_pred cCCEEEEECCceeeecCCeEEEEecCCCCC------------CCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999654 58899999999999887666666666666655442110
Q ss_pred CCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCC-CcCChhHHHHHHHHHHHHHhcccCCCCccc
Q 002353 705 SQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVF-PRLHDPDMEKLTHVYAELRRESSHGQGVPI 783 (932)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~-P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pi 783 (932)
+. .... .+ ......+.++|..|+.... ..+++++.+.|..++..++- -
T Consensus 220 --~~-----------~~~~----~~-----~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i---------~ 268 (633)
T TIGR02442 220 --PE-----------AFAA----RW-----AAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGV---------D 268 (633)
T ss_pred --cH-----------HHHH----Hh-----hhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCC---------C
Confidence 00 0000 00 0123477889999997432 27899999999999886532 1
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhh
Q 002353 784 AVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDS 822 (932)
Q Consensus 784 tvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S 822 (932)
+.|....++|+|+|+|.|++|++|+.+||.+|+.+++..
T Consensus 269 s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL~h 307 (633)
T TIGR02442 269 GHRADIVMARAARALAALDGRRRVTAEDVREAAELVLPH 307 (633)
T ss_pred CccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHhhh
Confidence 479999999999999999999999999999999998754
No 13
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.92 E-value=4.2e-24 Score=249.67 Aligned_cols=267 Identities=23% Similarity=0.284 Sum_probs=190.1
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcE----EecCCCcccccccc-
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAV----YTTGKGASAVGLTA- 577 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v----~~~g~~ss~~gLta- 577 (932)
.|+|+..+|+++.+++.|| + |++|+|+||||||++++.++.+.|..- +......+..|+..
T Consensus 193 dv~Gq~~~~~al~~aa~~g--------~------~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~ 258 (499)
T TIGR00368 193 DIKGQQHAKRALEIAAAGG--------H------NLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLID 258 (499)
T ss_pred HhcCcHHHHhhhhhhccCC--------C------EEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhcc
Confidence 4789999999999998877 3 999999999999999999998766421 11111112222111
Q ss_pred --------------eeec-CcccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccc
Q 002353 578 --------------AVHK-DPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQAR 642 (932)
Q Consensus 578 --------------~v~k-d~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar 642 (932)
+... ....|.+...+|.+.+|++|||||||+++|++..+..|+++||++.++|.+.|....++++
T Consensus 259 ~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~ 338 (499)
T TIGR00368 259 RKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPAR 338 (499)
T ss_pred ccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCC
Confidence 0000 0123445678999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeeCCCC-CccCC-C--CCcc------cccCCChhhhccccEEEEecCCCChh--------HhHHHHHHHHhhccC
Q 002353 643 CSVIAAANPVG-GRYDS-S--KTFS------ENVELTDPIISRFDVLCVVKDVVDPV--------VDEMLAKFVIDSHFK 704 (932)
Q Consensus 643 ~sIIAAaNp~~-Gry~~-~--~~~~------~ni~L~~~LLsRFDli~~l~D~~d~~--------~D~~La~~vl~~h~~ 704 (932)
+++|||+||+. |+|.. . .+++ ....++.|||+||||++.+.+..... ....+.+.|..-+..
T Consensus 339 frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~ 418 (499)
T TIGR00368 339 FQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREI 418 (499)
T ss_pred eEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHH
Confidence 99999999984 77753 2 2222 23489999999999999996543221 112233333221110
Q ss_pred CCCCCCCCCCCCccchhhhhhhhcc-cCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCccc
Q 002353 705 SQPKGVNLDDKSKNESEEDIQVADR-EIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPI 783 (932)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pi 783 (932)
+..+..... ..-...++...|++|+. +++++.+.+.+.|. ...+
T Consensus 419 ----------------q~~R~~~~~~~~~N~~l~~~~l~~~~~---------l~~~~~~~l~~a~~----------~~~l 463 (499)
T TIGR00368 419 ----------------QNIRYEKFANINKNADLNSDEIEQFCK---------LSAIDANDLEGALN----------KLGL 463 (499)
T ss_pred ----------------HHHHhcCCCCCcccccCCHHHHHhhcC---------CCHHHHHHHHHHHH----------hcCC
Confidence 000100000 00023457777776532 56678888887765 3457
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Q 002353 784 AVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRV 818 (932)
Q Consensus 784 tvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l 818 (932)
|.|....|+|+|.+.|.|++++.|+.+||.+|+..
T Consensus 464 S~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~~ 498 (499)
T TIGR00368 464 SSRATHRILKVARTIADLKEEKNISREHLAEAIEY 498 (499)
T ss_pred CchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhc
Confidence 99999999999999999999999999999999853
No 14
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.91 E-value=5.4e-25 Score=250.94 Aligned_cols=288 Identities=18% Similarity=0.202 Sum_probs=210.4
Q ss_pred CCceEEEeCCCCchHHHHHHHHHHhCCCc---EEecCCCccccc----ccceeecCcccchhhhccCceeccCCCeeeec
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEKTGQRA---VYTTGKGASAVG----LTAAVHKDPVTREWTLEGGALVLADRGICLID 606 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~~~~r~---v~~~g~~ss~~g----Lta~v~kd~~~g~~~le~Gal~lAd~GIl~ID 606 (932)
.+++|||.|++||||..+|++||+.++|. +.....++-... -.++..+..+||.-.-..|.+..|+||++|||
T Consensus 163 s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLD 242 (464)
T COG2204 163 SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLD 242 (464)
T ss_pred CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEcCCceEEee
Confidence 45699999999999999999999999984 222111221111 24556777888888888999999999999999
Q ss_pred cccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCC
Q 002353 607 EFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVV 686 (932)
Q Consensus 607 E~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~ 686 (932)
||..||.+.|..|+.++++++ +.+.|...+.+.+++||||||...........| |=||+|.+
T Consensus 243 EI~~mpl~~Q~kLLRvLqe~~--~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~F------------ReDLyyRL---- 304 (464)
T COG2204 243 EIGEMPLELQVKLLRVLQERE--FERVGGNKPIKVDVRIIAATNRDLEEEVAAGRF------------REDLYYRL---- 304 (464)
T ss_pred ccccCCHHHHHHHHHHHHcCe--eEecCCCcccceeeEEEeecCcCHHHHHHcCCc------------HHHHHhhh----
Confidence 999999999999999999998 567999999999999999999976333222222 55666554
Q ss_pred ChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHH
Q 002353 687 DPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTH 766 (932)
Q Consensus 687 d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~ 766 (932)
.|+..+.... +.+.+|++.|-.++|+++..-.. .-.+.++++|...|..
T Consensus 305 ----------nV~~i~iPpL--------------------RER~EDIp~L~~hfl~~~~~~~~-~~~~~~s~~a~~~L~~ 353 (464)
T COG2204 305 ----------NVVPLRLPPL--------------------RERKEDIPLLAEHFLKRFAAELG-RPPKGFSPEALAALLA 353 (464)
T ss_pred ----------ccceecCCcc--------------------cccchhHHHHHHHHHHHHHHHcC-CCCCCCCHHHHHHHHh
Confidence 2333333222 22356667777788888776332 1356899999999999
Q ss_pred HHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHhhhhcch
Q 002353 767 VYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSFISTQKFGVQKALQRSFRKYMTFK 846 (932)
Q Consensus 767 ~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~~~~~k~s~~~~l~~~f~~~~~~~ 846 (932)
| .||+|+|+|+++++.+...+. .+.++.+|+..-+ .. +.... ...... .. ....
T Consensus 354 y------------~WPGNVREL~N~ver~~il~~---~~~i~~~~l~~~~--~~-~~~~~-~~~~~~-----~~--~~~~ 407 (464)
T COG2204 354 Y------------DWPGNVRELENVVERAVILSE---GPEIEVEDLPLEI--LA-PAAEA-LAGPAG-----EA--ALPG 407 (464)
T ss_pred C------------CCChHHHHHHHHHHHHHhcCC---ccccchhhccccc--cc-ccccc-cccccc-----cc--cccc
Confidence 8 999999999999988776655 7778888875432 00 00000 000000 00 0000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHhcCcc
Q 002353 847 KEYNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQELEIY 900 (932)
Q Consensus 847 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~i~ 900 (932)
....+.+..++++++..+|..++.+.. +++..++|+..+|++|+++||+.
T Consensus 408 ~~l~~~~~~~Er~~I~~aL~~~~g~~~----~aA~~LGi~R~tLy~Klk~~g~~ 457 (464)
T COG2204 408 LPLGEALAEVERQLILQALERTGGNKS----EAAERLGISRKTLYRKLKEYGID 457 (464)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHHHCCCHHHHHHHHHHhCCC
Confidence 224677889999999999998888766 78899999999999999999985
No 15
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.91 E-value=2e-23 Score=249.55 Aligned_cols=255 Identities=19% Similarity=0.215 Sum_probs=201.5
Q ss_pred HHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCc--EEecCCCcccccccceee--cCcc
Q 002353 509 DIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRA--VYTTGKGASAVGLTAAVH--KDPV 584 (932)
Q Consensus 509 ~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~--v~~~g~~ss~~gLta~v~--kd~~ 584 (932)
.+|+|++|..+... -| ||||.|+||||||++++++++.+++. +.....+.+...|.+++. ....
T Consensus 2 ~~~~Al~l~av~p~-----~g-------~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~ 69 (589)
T TIGR02031 2 RAKLALTLLAVDPS-----LG-------GVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLA 69 (589)
T ss_pred hHHHHHHHhccCCC-----cc-------eEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhh
Confidence 57899999888752 11 89999999999999999999998874 332222334444555432 1123
Q ss_pred cchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCccc
Q 002353 585 TREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSE 664 (932)
Q Consensus 585 ~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ 664 (932)
+|.|.+++|.|..|++||+||||++.+++..|..|+++|+++.+++.+.|....+++++.|||++||..+
T Consensus 70 ~g~~~~~~G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~---------- 139 (589)
T TIGR02031 70 GGQRVTQPGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEG---------- 139 (589)
T ss_pred cCcccCCCCCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccc----------
Confidence 5778899999999999999999999999999999999999999999999999999999999999999741
Q ss_pred ccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHH
Q 002353 665 NVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKY 744 (932)
Q Consensus 665 ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~Lrky 744 (932)
...|+++|++||++.+.+...+.......+.++.+..+.. ........++++
T Consensus 140 ~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~----------------------------~~~~~~~~~~~~ 191 (589)
T TIGR02031 140 GGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVF----------------------------RMNDELELLRGQ 191 (589)
T ss_pred cCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhh----------------------------hcchhhHHHHHH
Confidence 1278999999999999887777666656666655421100 001245688999
Q ss_pred HHHHhhcCCC-cCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhh
Q 002353 745 ITYAKLNVFP-RLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDS 822 (932)
Q Consensus 745 I~yar~~~~P-~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S 822 (932)
|..||+.+.. .+++++.+.|..++..+.- .+.|....++|.|+|+|.|++|++|+.+||..|+.++...
T Consensus 192 i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv---------~s~Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl~h 261 (589)
T TIGR02031 192 IEAARELLPQVTISAEQVKELVLTAASLGI---------SGHRADLFAVRAAKAHAALHGRTEVTEEDLKLAVELVLLP 261 (589)
T ss_pred HHHHHHhcCCccCCHHHHHHHHHHHHHcCC---------CCccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhh
Confidence 9999975433 6889999999998864331 2479999999999999999999999999999999998754
No 16
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.91 E-value=1.5e-23 Score=244.01 Aligned_cols=255 Identities=21% Similarity=0.349 Sum_probs=184.7
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcE-------------------
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAV------------------- 563 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v------------------- 563 (932)
.++|+..+|+++.+++.+| + |++|+|+||+|||+|++.++.+.+..-
T Consensus 192 ~v~Gq~~~~~al~laa~~G--------~------~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~ 257 (506)
T PRK09862 192 DVIGQEQGKRGLEITAAGG--------H------NLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESV 257 (506)
T ss_pred EEECcHHHHhhhheeccCC--------c------EEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccc
Confidence 5789999999999888877 3 999999999999999999998766321
Q ss_pred ---------EecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccc
Q 002353 564 ---------YTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAG 634 (932)
Q Consensus 564 ---------~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kag 634 (932)
...++++|..+| ..|.+...+|.+.+|++|||||||++.++...+..|+++||+|.++|.+.|
T Consensus 258 ~~~~~~rPfr~ph~~~s~~~l--------~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g 329 (506)
T PRK09862 258 QKQWRQRPFRSPHHSASLTAM--------VGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTR 329 (506)
T ss_pred cCCcCCCCccCCCccchHHHH--------hCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCC
Confidence 111111122222 234566789999999999999999999999999999999999999999999
Q ss_pred eeEeeccceEEEeeeCCCC-CccCCC-CCccc------ccCCChhhhccccEEEEecCCCChh----------HhHHHHH
Q 002353 635 IVTSLQARCSVIAAANPVG-GRYDSS-KTFSE------NVELTDPIISRFDVLCVVKDVVDPV----------VDEMLAK 696 (932)
Q Consensus 635 i~~~l~ar~sIIAAaNp~~-Gry~~~-~~~~~------ni~L~~~LLsRFDli~~l~D~~d~~----------~D~~La~ 696 (932)
...++++++.+|||+||+. |.|... .++.. .-.|+.|+|+|||+.+.+.. ++.. .-..+.+
T Consensus 330 ~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~-~~~~~l~~~~~~~ess~~i~~ 408 (506)
T PRK09862 330 AKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPL-PPPGILSKTVVPGESSATVKQ 408 (506)
T ss_pred cceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCC-CCHHHHhcccCCCCChHHHHH
Confidence 9999999999999999984 666432 22221 23799999999999999843 3221 0011111
Q ss_pred HHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhccc
Q 002353 697 FVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESS 776 (932)
Q Consensus 697 ~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~ 776 (932)
.|+... +.+..+. . .. ...++...+++|+. ++.++...+..+|.
T Consensus 409 rV~~ar----------------~~q~~r~--~-~~-n~~l~~~~l~~~~~---------l~~~~~~~l~~~~~------- 452 (506)
T PRK09862 409 RVMAAR----------------ERQFKRQ--N-KL-NAWLDSPEIRQFCK---------LESEDARWLEETLI------- 452 (506)
T ss_pred HHhhHH----------------HHHHHHH--H-HH-hcccCHHHHHHHhC---------CCHHHHHHHHHHHH-------
Confidence 111100 0000010 0 01 12345556655543 56677877877765
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 002353 777 HGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVL 819 (932)
Q Consensus 777 ~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~ 819 (932)
...++.|....++|+|.+.|.|..+++|+.+||.+|+.+-
T Consensus 453 ---~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~yR 492 (506)
T PRK09862 453 ---HLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSYR 492 (506)
T ss_pred ---HcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Confidence 3457899999999999999999999999999999998763
No 17
>PF12619 MCM2_N: Mini-chromosome maintenance protein 2; InterPro: IPR008045 The MCM2-7 complex consists of six closely related proteins that are highly conserved throughout the eukaryotic kingdom. During late mitosis and G1, replication origins are 'licensed' for replication by loading the minichromosome maintenance (MCM) 2-7 proteins pre-replicative complex essential for initiating and elongating replication forks during S phase. The components of the MCM2-7 complex in Homo sapiens (Human) (EBI-913604 from INTACT) are: . DNA replication licensing factor MCM2, P49736 from SWISSPROT, IPR008045 from INTERPRO DNA replication licensing factor MCM3, P25205 from SWISSPROT, IPR008046 from INTERPRO DNA replication licensing factor MCM4, P33991 from SWISSPROT, IPR008047 from INTERPRO DNA replication licensing factor MCM5, P33992 from SWISSPROT, IPR008048 from INTERPRO DNA replication licensing factor MCM6, Q14566 from SWISSPROT, IPR008049 from INTERPRO DNA replication licensing factor MCM7, P33993 from SWISSPROT, IPR008050 from INTERPRO Studies in Xenopus eggs have showed the 6 MCM proteins to form hexamers, where each class is present in equal stoichiometry []. The initiation of DNA synthesis in eukaryotes requires the binding of origin recognition complex (ORC) - a complex of six subunits - to the autonomously replicating sequences (ARS) of replication origins [], the recruitment of CDC6 and binding of the MCM protein complex to the ARS to form the prereplicative complex (pre-RC) []. DNA synthesis is subsequently initiated by the activation of pre-RC by CDC7 and CDC28 protein kinases []. MCM proteins associate with chromatin during G1 phase and dissociate again during S phase, remaining unbound until the end of mitosis []. Periodic chromatin association of the MCM complex ensures that DNA synthesis from replication origins is initiated only once during the cell cycle, avoiding over-replication of parts of the genome. Elongation of replication forks away from individual replication origins results in displacement of the MCM-containing complex from chromatin. Budding yeast MCM proteins are translocated in and out of the nucleus during each cell cycle. However, fission yeast MCMs, like those in metazoans, are constitutively nuclear. The six classes of MCM protein together share a conserved 200 amino acid residue domain, while sequences within the same class show more extensive similarity outside this region. The conserved central domain is similar to the A motif of the Walker-type NTP-binding domain; it also shares similarity with ATPase domains of prokaryotic NtrC-related transcription regulators. The ATP-binding motif is thought to mediate ATP-dependent opening of double-stranded DNA at replication origins. In addition to the central region, MCM2, 4, 6 and 7 contain a zinc-finger-type motif thought to have a role in mediating protein-protein interactions []. Moreover, a conserved alpha-helical structure in the C-terminal region has been noted; this comprises a conserved heptad repeat and a putative four-helix bundle. Most of the MCM proteins contain acidic regions, or alternately repeated clusters of acidic and basic residues. In addition to its role in initiation of DNA replication, MCM2 is able to inhibit the MCM4,6,7 helicase. Studies on murine MCM2 indicate that its C terminus is required for interaction with MCM4, as well as for inhibition of the DNA helicase activity of the MCM4,6,7 complex. The N-terminal region, which contains an H3-binding domain and a region required for nuclear localisation, is required for the phosphorylation by CDC7 kinase. ; GO: 0003677 DNA binding, 0005524 ATP binding, 0006270 DNA-dependent DNA replication initiation, 0005634 nucleus
Probab=99.90 E-value=8.3e-25 Score=216.36 Aligned_cols=122 Identities=35% Similarity=0.575 Sum_probs=95.6
Q ss_pred CCCCccccccccccchhHhhhcCCCCCccccCCCCCccccccccccCHHHHHHHHHHHHHHhcccccCcC-ccccCcccc
Q 002353 48 EPEDEEEGEDLFNDNFMDDYRRLDEHDQYESLGLDESLEDERDLDQIIADRRAAELELEARDGQMSINPS-RKKLPQLLH 126 (932)
Q Consensus 48 ~~~~~~~gedl~~~~~~~dy~~~~~~d~y~~~~~d~~~~~~~~~~~~~~~r~~~~~~~~~r~~~~~~~~~-~~~~~~~~~ 126 (932)
..+||++||||||+||++|||++|++|+|++.+|||+.+|+ +|++++|||||++|++||+.+++..+ |+++|++|+
T Consensus 24 ~~eEEeeGEDLfgDnme~DYr~~~elD~Yd~~~lDDe~dy~---~md~~~RraaE~~L~~RDr~~~~~~~~rr~~p~~~~ 100 (156)
T PF12619_consen 24 DEEEEEEGEDLFGDNMERDYRPNPELDRYDEDGLDDESDYE---EMDPAARRAAERELNRRDREEGRRRGRRRRMPAAFL 100 (156)
T ss_pred ccccccccchhcccCHHHHhccCcccCccccCCCCchhhcc---cCCHHHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence 45677899999999999999999999999999999987899 99999999999999999999876533 456799998
Q ss_pred CCCCCCC-CC---CcccccccccCcccccc--ccccccCCCCCCCCCCCCCCCCCCC
Q 002353 127 DQDTDDD-SY---RPSKRSRADFRPRRSQI--DNDAMQSSPRQSRDDVPMTDATDDY 177 (932)
Q Consensus 127 ~~~~~~~-~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (932)
+++++++ .. .++||||++|+..++.. +++ .+ +..++++|++|+++|
T Consensus 101 ddddddd~~~~l~~~~rRRR~~~d~~~d~~d~~~d-~D----~~~eEl~lE~l~D~k 152 (156)
T PF12619_consen 101 DDDDDDDEDFDLPVQRRRRRRRYDEAADEDDMDMD-ID----EEEEELSLENLEDVK 152 (156)
T ss_pred cccccccccccccccchhhHHHhhhhccCcccccc-cc----ccccccchhhhhccc
Confidence 8765544 22 34577777788733211 111 11 345788999999999
No 18
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.90 E-value=1.1e-22 Score=227.14 Aligned_cols=266 Identities=22% Similarity=0.290 Sum_probs=193.8
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcE------Eec---------
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAV------YTT--------- 566 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v------~~~--------- 566 (932)
..|.||+.+|.+++++++... .| ||||.|+||||||++++.++.+.+..- +.+
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~-----~g-------~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPK-----IG-------GVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMC 71 (337)
T ss_pred cccccHHHHHHHHHHHhcCCC-----CC-------eEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccC
Confidence 468999999999999998631 11 899999999999999999999875311 000
Q ss_pred -------------------------CCCcccccccceeecCc--ccchhhhccCceeccCCCeeeeccccccCcchhhhH
Q 002353 567 -------------------------GKGASAVGLTAAVHKDP--VTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSI 619 (932)
Q Consensus 567 -------------------------g~~ss~~gLta~v~kd~--~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L 619 (932)
..+++.-.|++++.-+. .+|.|.+++|.+..|++|++||||++.|++..|..|
T Consensus 72 ~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~L 151 (337)
T TIGR02030 72 EEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVL 151 (337)
T ss_pred hHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHH
Confidence 00111112333332222 267888899999999999999999999999999999
Q ss_pred HHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHH
Q 002353 620 HEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVI 699 (932)
Q Consensus 620 ~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl 699 (932)
+++|+++.+++.+.|....+++++.+||+.||..| .++++|++||.+.+.+....+......+.+...
T Consensus 152 l~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg------------~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 152 LDVAASGWNVVEREGISIRHPARFVLVGSGNPEEG------------ELRPQLLDRFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred HHHHHhCCeEEEECCEEEEcCCCEEEEeccccccC------------CCCHHHHhhcceEEECCCCCCHHHHHHHHHhhh
Confidence 99999998889999999999999999999999754 589999999999888844433233333333211
Q ss_pred hhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCC-CcCChhHHHHHHHHHHHHHhcccCC
Q 002353 700 DSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVF-PRLHDPDMEKLTHVYAELRRESSHG 778 (932)
Q Consensus 700 ~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~-P~Ls~ea~~~L~~~Y~~lR~~~~~~ 778 (932)
... ..+.. +. + ... ..+..+.+-|..+++.+. ..+++++.++|.+....+|..
T Consensus 220 ~~~--~~~~~--~~-------~------~~~-----~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~---- 273 (337)
T TIGR02030 220 EYD--ADPHA--FC-------E------KWQ-----TEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVD---- 273 (337)
T ss_pred hcc--cCchh--hh-------h------hhh-----hhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCC----
Confidence 100 00000 00 0 000 012345667777776433 258899999999988766521
Q ss_pred CCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhh
Q 002353 779 QGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDS 822 (932)
Q Consensus 779 ~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S 822 (932)
++|....++|.|+|+|.+++|++|+.+||..|+.+....
T Consensus 274 -----s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 274 -----GLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLALRH 312 (337)
T ss_pred -----CCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999988765
No 19
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.90 E-value=6.9e-24 Score=237.89 Aligned_cols=292 Identities=19% Similarity=0.209 Sum_probs=199.7
Q ss_pred CCceEEEeCCCCchHHHHHHHHHHhCCCcEE---ecCCCc---cc-ccccceeecCcccchhhhccCceeccCCCeeeec
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEKTGQRAVY---TTGKGA---SA-VGLTAAVHKDPVTREWTLEGGALVLADRGICLID 606 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~~~~r~v~---~~g~~s---s~-~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~ID 606 (932)
.|.+|||.|++||||..+||+||+.++|... .....+ +. -.-.++..|..+||...-..|.+.+||||++|+|
T Consensus 245 Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLD 324 (550)
T COG3604 245 SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLD 324 (550)
T ss_pred CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccccccccchhccCcceeecCCCeEech
Confidence 4559999999999999999999999998621 111111 11 1224567888999999999999999999999999
Q ss_pred cccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCC
Q 002353 607 EFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVV 686 (932)
Q Consensus 607 E~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~ 686 (932)
||..||...|.+|+.+++.|. |.+.|...+++.+++||||||...........| |=||++.+
T Consensus 325 EIGelPL~lQaKLLRvLQegE--ieRvG~~r~ikVDVRiIAATNRDL~~~V~~G~F------------RaDLYyRL---- 386 (550)
T COG3604 325 EIGELPLALQAKLLRVLQEGE--IERVGGDRTIKVDVRVIAATNRDLEEMVRDGEF------------RADLYYRL---- 386 (550)
T ss_pred hhccCCHHHHHHHHHHHhhcc--eeecCCCceeEEEEEEEeccchhHHHHHHcCcc------------hhhhhhcc----
Confidence 999999999999999999998 678999999999999999999975222222222 66777765
Q ss_pred ChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHH
Q 002353 687 DPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLT 765 (932)
Q Consensus 687 d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~ 765 (932)
.|+..+.... +.+..|...+-..|++++-. +.+. .-.|+.+|.+.|.
T Consensus 387 ----------sV~Pl~lPPL--------------------RER~~DIplLA~~Fle~~~~~~gr~--~l~ls~~Al~~L~ 434 (550)
T COG3604 387 ----------SVFPLELPPL--------------------RERPEDIPLLAGYFLEKFRRRLGRA--ILSLSAEALELLS 434 (550)
T ss_pred ----------cccccCCCCc--------------------ccCCccHHHHHHHHHHHHHHhcCCc--ccccCHHHHHHHH
Confidence 2223332221 12234444444455555433 2221 3379999999999
Q ss_pred HHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhhhhhhhhchHHHHHHHH--hhhh
Q 002353 766 HVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSFISTQKFGVQKALQRSF--RKYM 843 (932)
Q Consensus 766 ~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~~~~~k~s~~~~l~~~f--~~~~ 843 (932)
+| .||+|||+||++|+.|.-.| +..++.+|+ .-+.....++.. +..... .... ..-.
T Consensus 435 ~y------------~wPGNVRELen~veRavlla----~~~~~~~d~-~~l~~~~~~~~~-~~~~~~---~p~~~~~~~~ 493 (550)
T COG3604 435 SY------------EWPGNVRELENVVERAVLLA----GRLTRRGDL-CTLELSLSALLW-KTLPAP---EPSALPEPAL 493 (550)
T ss_pred cC------------CCCCcHHHHHHHHHHHHHHh----cccCCCcce-eehhhhhhcccc-ccCCCC---CccccCCccC
Confidence 98 99999999999999988777 334555554 111111111100 000000 0000 0000
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHhcCcc
Q 002353 844 TFKKEYNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQELEIY 900 (932)
Q Consensus 844 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~i~ 900 (932)
...-...+......|++|.++|.-.+.++. .++..++.+..+|-+++|+|||.
T Consensus 494 p~~~~l~~~~~~~eR~~I~~aL~~~~~~~a----~AAr~LGl~~~~L~~~~kRlGI~ 546 (550)
T COG3604 494 PGEHTLREATEEFERQLIIAALEETNGNWA----GAARRLGLTRRTLLYRMKRLGIK 546 (550)
T ss_pred CCcccchhhhHHHHHHHHHHHHHHhCCcHH----HHHHHhCCCHHHHHHHHHHcCCC
Confidence 001122345667899999999998777766 67899999999999999999995
No 20
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.89 E-value=7.8e-22 Score=219.90 Aligned_cols=263 Identities=19% Similarity=0.242 Sum_probs=186.1
Q ss_pred cccChHHHHHHHhhhhh-cCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEec---------------
Q 002353 503 SIYGHEDIKTALALSMF-GGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTT--------------- 566 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~-gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~--------------- 566 (932)
.|.|++.+|++++++++ .| .+ |+||.|+||||||++++.+++++|.--...
T Consensus 9 ~i~Gq~~~~~~l~~~~~~~~-------~~------~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~ 75 (334)
T PRK13407 9 AIVGQEEMKQAMVLTAIDPG-------IG------GVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEW 75 (334)
T ss_pred HhCCHHHHHHHHHHHHhccC-------CC------cEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCccc
Confidence 57899999999998876 22 12 899999999999999999999986411111
Q ss_pred ------------------CCCcccccccceeecCc--ccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhc
Q 002353 567 ------------------GKGASAVGLTAAVHKDP--VTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQ 626 (932)
Q Consensus 567 ------------------g~~ss~~gLta~v~kd~--~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq 626 (932)
..+++...|++++.-+. .+|.+.+++|.+..|++|+|||||++.+++..+..|+++|+++
T Consensus 76 ~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~ 155 (334)
T PRK13407 76 AHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSG 155 (334)
T ss_pred ccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcC
Confidence 11112222444333222 2577889999999999999999999999999999999999999
Q ss_pred eeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCC
Q 002353 627 SISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQ 706 (932)
Q Consensus 627 ~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~ 706 (932)
.+++.+.|....+++++.++|++||..| .+++++++||.+.+.+....+......+........ ..
T Consensus 156 ~v~v~r~G~~~~~p~rfiviAt~NP~e~------------~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~--~~ 221 (334)
T PRK13407 156 ENVVEREGLSIRHPARFVLVGSGNPEEG------------ELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYD--AD 221 (334)
T ss_pred CeEEEECCeEEecCCCEEEEecCCcccC------------CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhccc--cc
Confidence 9999999999999999999999999643 489999999999998843333233333433321100 00
Q ss_pred CCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcC-CCcCChhHHHHHHHHHHHHHhcccCCCCcccCH
Q 002353 707 PKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNV-FPRLHDPDMEKLTHVYAELRRESSHGQGVPIAV 785 (932)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~-~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitv 785 (932)
+.. +. .... ....+..+. |..+++.+ ...++++..++|.+.....|.. ++
T Consensus 222 ~~~--~~-------------~~~~-~~~~~~~~~----i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~---------s~ 272 (334)
T PRK13407 222 HDA--FM-------------AKWG-AEDMQLRGR----ILGARARLPQLKTPNTVLHDCAALCIALGSD---------GL 272 (334)
T ss_pred chh--hh-------------cccc-ccccCCHHH----HHHHHHhcCCcccCHHHHHHHHHHHHHHCCC---------Cc
Confidence 100 00 0000 011122233 33344332 2367888888888887666543 47
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh
Q 002353 786 RHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLD 821 (932)
Q Consensus 786 R~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~ 821 (932)
|.-..+++.|.|+|-++.|++|+.+||..+..+...
T Consensus 273 Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~vl~ 308 (334)
T PRK13407 273 RGELTLLRAARALAAFEGAEAVGRSHLRSVATMALS 308 (334)
T ss_pred hHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHHHhhh
Confidence 888889999999999999999999999888766543
No 21
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.8e-22 Score=227.14 Aligned_cols=256 Identities=22% Similarity=0.321 Sum_probs=187.5
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCC---------------------
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQR--------------------- 561 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r--------------------- 561 (932)
+|.||+..|+|+.++..|| | |+|++||||||||++|+.+..++|.
T Consensus 180 DV~GQ~~AKrAleiAAAGg--------H------nLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~ 245 (490)
T COG0606 180 DVKGQEQAKRALEIAAAGG--------H------NLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHE 245 (490)
T ss_pred hhcCcHHHHHHHHHHHhcC--------C------cEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccc
Confidence 5789999999999999998 6 9999999999999999988777662
Q ss_pred --------cEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeecc
Q 002353 562 --------AVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKA 633 (932)
Q Consensus 562 --------~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~ka 633 (932)
.+..+|+++|...|.++. -..+||.+.+|++||+||||+.........+|.+-||.+.+.|+++
T Consensus 246 ~~~~~~~rPFr~PHHsaS~~aLvGGG--------~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa 317 (490)
T COG0606 246 GCPLKIHRPFRAPHHSASLAALVGGG--------GVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRA 317 (490)
T ss_pred cCccceeCCccCCCccchHHHHhCCC--------CCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEc
Confidence 233345555555554432 3567999999999999999999999999999999999999999999
Q ss_pred ceeEeeccceEEEeeeCCCCCccCC--CCC--cc------cccCCChhhhccccEEEEecCCCChh---------HhHHH
Q 002353 634 GIVTSLQARCSVIAAANPVGGRYDS--SKT--FS------ENVELTDPIISRFDVLCVVKDVVDPV---------VDEML 694 (932)
Q Consensus 634 gi~~~l~ar~sIIAAaNp~~Gry~~--~~~--~~------~ni~L~~~LLsRFDli~~l~D~~d~~---------~D~~L 694 (932)
+...++++++.++||+||+.+-|.. ... ++ ..-+|+.|||+|+|+..-+....-.+ .-..+
T Consensus 318 ~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~~~~~~~~ess~~v 397 (490)
T COG0606 318 GSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGELIRQVPTGESSAGV 397 (490)
T ss_pred CCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHhhcCCCCCCCcHHH
Confidence 9999999999999999999854432 222 22 23489999999999999874332000 01112
Q ss_pred HHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccC-CCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHh
Q 002353 695 AKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREI-DPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRR 773 (932)
Q Consensus 695 a~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~ 773 (932)
.+.|..-+ +.+.. +..+. -...+..+.|++|+. |+.++++.+...-.
T Consensus 398 ~~rVa~AR----------------~~Q~~---R~~~~~~Na~l~~~~l~k~~~---------L~~~~~~~L~~al~---- 445 (490)
T COG0606 398 RERVAKAR----------------EAQIA---RAGRIGINAELSEEALRKFCA---------LQREDADLLKAALE---- 445 (490)
T ss_pred HHHHHHHH----------------HHHHH---HhhccCcchhcCHHHHHHhcc---------cCHhHHHHHHHHHH----
Confidence 22221111 00111 11111 123357777777544 44456666665322
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Q 002353 774 ESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRV 818 (932)
Q Consensus 774 ~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l 818 (932)
...+++|....|+|+|...|.+...+.|...|+.+||..
T Consensus 446 ------~~~lS~R~~~rILKvarTiADL~g~~~i~~~hl~eAi~y 484 (490)
T COG0606 446 ------RLGLSARAYHRILKVARTIADLEGSEQIERSHLAEAISY 484 (490)
T ss_pred ------hcchhHHHHHHHHHHHhhhhcccCcchhhHHHHHHHHhh
Confidence 345789999999999999999999999999999999864
No 22
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.88 E-value=9.8e-22 Score=219.49 Aligned_cols=265 Identities=23% Similarity=0.300 Sum_probs=190.3
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCC--------------
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGK-------------- 568 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~-------------- 568 (932)
.|.||+.+|+||+++++... + | +|||.|++|||||+++|.++++++..-...+.
T Consensus 18 ~ivGq~~~k~al~~~~~~p~---------~-~--~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~ 85 (350)
T CHL00081 18 AIVGQEEMKLALILNVIDPK---------I-G--GVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSD 85 (350)
T ss_pred HHhChHHHHHHHHHhccCCC---------C-C--eEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhch
Confidence 57899999999999998741 1 1 79999999999999999999987753211100
Q ss_pred --------------------------Ccccccccceee--cCcccchhhhccCceeccCCCeeeeccccccCcchhhhHH
Q 002353 569 --------------------------GASAVGLTAAVH--KDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIH 620 (932)
Q Consensus 569 --------------------------~ss~~gLta~v~--kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~ 620 (932)
+.+...|.+++. +.-.+|.+.+++|.+..|++|++||||++.+++..|..|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LL 165 (350)
T CHL00081 86 EVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILL 165 (350)
T ss_pred hhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHH
Confidence 011111222111 1112455677899999999999999999999999999999
Q ss_pred HHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHh
Q 002353 621 EAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVID 700 (932)
Q Consensus 621 eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~ 700 (932)
++|+++.+++.+.|....+++++.+||+.||..| .++++|++||.+.+.+....++....++.+....
T Consensus 166 eam~e~~~~ier~G~s~~~p~rfiviaT~np~eg------------~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~ 233 (350)
T CHL00081 166 DSAASGWNTVEREGISIRHPARFVLVGSGNPEEG------------ELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTS 233 (350)
T ss_pred HHHHhCCeEEeeCCeeeecCCCEEEEeccCcccC------------CCCHHHHHHhCceeecCCCCChHHHHHHHHhhhc
Confidence 9999999999999999999999999999999754 4899999999999998554445555555544321
Q ss_pred hccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCC-CcCChhHHHHHHHHHHHHHhcccCCC
Q 002353 701 SHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVF-PRLHDPDMEKLTHVYAELRRESSHGQ 779 (932)
Q Consensus 701 ~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~-P~Ls~ea~~~L~~~Y~~lR~~~~~~~ 779 (932)
. ...+.. +. ..... ...+ +..-|.-|++.+. ..+++...++|.+....+|.
T Consensus 234 ~--~~~~~~--~~-------------~~~~~-~~~~----~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~------ 285 (350)
T CHL00081 234 F--DKNPQE--FR-------------EKYEE-SQEE----LRSKIVAAQNLLPKVEIDYDLRVKISQICSELDV------ 285 (350)
T ss_pred c--ccChhh--hh-------------hhhcc-cccc----CHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCC------
Confidence 0 000100 00 00000 0111 2223333444332 36888888888888776653
Q ss_pred CcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhh
Q 002353 780 GVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDS 822 (932)
Q Consensus 780 ~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S 822 (932)
-++|....++|.|.|+|-++.|++|+.+||..|..+....
T Consensus 286 ---~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL~H 325 (350)
T CHL00081 286 ---DGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCLRH 325 (350)
T ss_pred ---CCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 2589999999999999999999999999999999887665
No 23
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.88 E-value=1.7e-22 Score=208.65 Aligned_cols=159 Identities=27% Similarity=0.439 Sum_probs=99.9
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEe----------------
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYT---------------- 565 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~---------------- 565 (932)
..|.||+.+|+|++++..|+ | |+||+|+||||||++|+.+..++|.--..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~--------h------~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~ 68 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG--------H------HLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGP 68 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC----------------EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S-
T ss_pred hhhcCcHHHHHHHHHHHcCC--------C------CeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCC
Confidence 47899999999999999997 5 99999999999999999999998743221
Q ss_pred ------------cCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeecc
Q 002353 566 ------------TGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKA 633 (932)
Q Consensus 566 ------------~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~ka 633 (932)
.++++|..+|. .|.....||.+.+|++|||||||+..+++....+|.+.||++.++|+++
T Consensus 69 ~~~~~~~~Pfr~phhs~s~~~li--------Ggg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~ 140 (206)
T PF01078_consen 69 DEGLIRQRPFRAPHHSASEAALI--------GGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRA 140 (206)
T ss_dssp --EEEE---EEEE-TT--HHHHH--------EEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEET
T ss_pred CCceecCCCcccCCCCcCHHHHh--------CCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEEC
Confidence 11122222222 2333678999999999999999999999999999999999999999999
Q ss_pred ceeEeeccceEEEeeeCCCCCccC--CCCCc--------ccccCCChhhhccccEEEEe
Q 002353 634 GIVTSLQARCSVIAAANPVGGRYD--SSKTF--------SENVELTDPIISRFDVLCVV 682 (932)
Q Consensus 634 gi~~~l~ar~sIIAAaNp~~Gry~--~~~~~--------~~ni~L~~~LLsRFDli~~l 682 (932)
|...++++++.+|||+||+.+-|- +...+ ...-.|+.||++|||+.+.+
T Consensus 141 ~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~ 199 (206)
T PF01078_consen 141 GGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEV 199 (206)
T ss_dssp TEEEEEB--EEEEEEE-S-----------------------------------------
T ss_pred CceEEEecccEEEEEeccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999985442 23333 22458999999999999887
No 24
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.85 E-value=2e-19 Score=206.06 Aligned_cols=311 Identities=17% Similarity=0.188 Sum_probs=201.4
Q ss_pred hHHHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCc---EEecCC
Q 002353 492 IGERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRA---VYTTGK 568 (932)
Q Consensus 492 i~~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~---v~~~g~ 568 (932)
.+.+|...+...|+|++.+.+.+++++..+. ||||.|+||||||++|+++++.+.++ .+....
T Consensus 10 ~i~~l~~~l~~~i~gre~vI~lll~aalag~--------------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~ 75 (498)
T PRK13531 10 RISRLSSALEKGLYERSHAIRLCLLAALSGE--------------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTR 75 (498)
T ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHHccCC--------------CEEEECCCChhHHHHHHHHHHHhcccCcceeeeee
Confidence 3567888999999999999888888777663 99999999999999999999987653 111111
Q ss_pred Cccccccccee-ecC-cccchhh-hccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEE
Q 002353 569 GASAVGLTAAV-HKD-PVTREWT-LEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSV 645 (932)
Q Consensus 569 ~ss~~gLta~v-~kd-~~~g~~~-le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sI 645 (932)
.++...+++.. .+. ...|.|. ..+|.+..++ ++|+|||+++++..|.+|+++|+++.+++ +|....++.++.+
T Consensus 76 fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~--lLfLDEI~rasp~~QsaLLeam~Er~~t~--g~~~~~lp~rfiv 151 (498)
T PRK13531 76 FSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAE--IVFLDEIWKAGPAILNTLLTAINERRFRN--GAHEEKIPMRLLV 151 (498)
T ss_pred ecCcHHhcCcHHHhhhhhcCchhhhcCCcccccc--EEeecccccCCHHHHHHHHHHHHhCeEec--CCeEEeCCCcEEE
Confidence 12233454432 111 1245553 5677776666 99999999999999999999999999776 7777788887777
Q ss_pred EeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHh-HHHHHHHHhhccC-CCCCCCCCCCCCccchhhh
Q 002353 646 IAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVD-EMLAKFVIDSHFK-SQPKGVNLDDKSKNESEED 723 (932)
Q Consensus 646 IAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D-~~La~~vl~~h~~-~~~~~~~~~~~~~~~~~~~ 723 (932)
+|+ |+.+. .-...+++++|| ++-+..+.++.... ..+ |..+.. ....
T Consensus 152 ~AT-N~LPE----------~g~~leAL~DRF-liri~vp~l~~~~~e~~l----L~~~~~~~~~~--------------- 200 (498)
T PRK13531 152 TAS-NELPE----------ADSSLEALYDRM-LIRLWLDKVQDKANFRSM----LTSQQDENDNP--------------- 200 (498)
T ss_pred EEC-CCCcc----------cCCchHHhHhhE-EEEEECCCCCchHHHHHH----HHcccccccCC---------------
Confidence 666 86441 114557999999 44444466653222 222 222111 0000
Q ss_pred hhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhC
Q 002353 724 IQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRL 803 (932)
Q Consensus 724 ~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~l 803 (932)
......++.+.+......+++ ..+++...++|.+.-..+|.... ...+++|....++++++|+|-+++
T Consensus 201 ------~~~~~vis~eel~~lq~~v~~---V~v~d~v~eyI~~L~~~lr~~r~---~~~~SpR~~~~l~~~akA~A~l~G 268 (498)
T PRK13531 201 ------VPASLQITDEEYQQWQKEIGK---ITLPDHVFELIFQLRQQLDALPN---APYVSDRRWKKAIRLLQASAFFSG 268 (498)
T ss_pred ------CcccCCCCHHHHHHHHHHhcc---eeCCHHHHHHHHHHHHHHhcCCC---CCCcCcHHHHHHHHHHHHHHHHCC
Confidence 001234677777666665553 36677777777666554553321 223899999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHH
Q 002353 804 RQHVTQEDVNMAIRVLLDSFISTQKFGVQKALQRSFRKYMTFKKEYNALLLDLLRELVKNALHFEE 869 (932)
Q Consensus 804 r~~Vt~~Dv~~AI~l~~~S~~~~~k~s~~~~l~~~f~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 869 (932)
|++|+++|+..|..++-..+-+ ...+.+....+++........+...+..+-.+.+++++
T Consensus 269 R~~V~p~Dv~ll~~vL~HRl~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (498)
T PRK13531 269 RDAIAPIDLILLKDCLWHDAQS------LNLLQQQLEQLMTEHAWQQQGMLTRLGAIVQRRLQLQQ 328 (498)
T ss_pred CCCCCHHHHHHhHHHhccCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998555544433222 33344444554554433344444445555544444443
No 25
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.80 E-value=8.9e-19 Score=208.10 Aligned_cols=241 Identities=17% Similarity=0.192 Sum_probs=183.1
Q ss_pred hHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCC--cEEecCCCcccccccceeecC--
Q 002353 507 HEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQR--AVYTTGKGASAVGLTAAVHKD-- 582 (932)
Q Consensus 507 ~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r--~v~~~g~~ss~~gLta~v~kd-- 582 (932)
++.+|.|++|..+... .+. .|||-|++|||||++++.++.++|. .+...+.++|...|.+++.-.
T Consensus 8 ~~~~~~Al~l~av~p~--------~~g---Gv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~ 76 (584)
T PRK13406 8 WADAALAAALLAVDPA--------GLG---GVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAAT 76 (584)
T ss_pred HHHHHHHHHHhCcCcc--------ccc---eEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhH
Confidence 8899999999888651 111 6999999999999999999999886 666677888888887765221
Q ss_pred cccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCc
Q 002353 583 PVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTF 662 (932)
Q Consensus 583 ~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~ 662 (932)
-..|....++|.|.+|++|||||||++.+++..+..|+++|+.|.++|.+.|...++++++.+||+-|+.. |.
T Consensus 77 l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~--~~----- 149 (584)
T PRK13406 77 LRAGRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAE--ED----- 149 (584)
T ss_pred hhcCCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChh--cc-----
Confidence 12345558899999999999999999999999999999999999999999999999999999999866642 21
Q ss_pred ccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHH
Q 002353 663 SENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLK 742 (932)
Q Consensus 663 ~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~Lr 742 (932)
-.|++++|+||++.+.+......+.. . +. .+..
T Consensus 150 ---~~L~~~lLDRf~l~v~v~~~~~~~~~--------~------~~---------------------------~~~~--- 182 (584)
T PRK13406 150 ---ERAPAALADRLAFHLDLDGLALRDAR--------E------IP---------------------------IDAD--- 182 (584)
T ss_pred ---cCCCHHhHhheEEEEEcCCCChHHhc--------c------cC---------------------------CCHH---
Confidence 27999999999999998433222110 0 00 0111
Q ss_pred HHHHHHhhcC-CCcCChhHHHHHHHHHHHHHhcccCCCCccc-CHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH
Q 002353 743 KYITYAKLNV-FPRLHDPDMEKLTHVYAELRRESSHGQGVPI-AVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLL 820 (932)
Q Consensus 743 kyI~yar~~~-~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pi-tvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~ 820 (932)
-|.-||+.+ ...++++...++...+. ...+ +.|....++|.|.|+|.|+.+++|+.+||.+|+.++.
T Consensus 183 -~I~~AR~rl~~v~v~~~~l~~i~~~~~----------~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~lvL 251 (584)
T PRK13406 183 -DIAAARARLPAVGPPPEAIAALCAAAA----------ALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLVL 251 (584)
T ss_pred -HHHHHHHHHccCCCCHHHHHHHHHHHH----------HhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 111122211 23456665555554443 2234 8899999999999999999999999999999999987
Q ss_pred hhh
Q 002353 821 DSF 823 (932)
Q Consensus 821 ~S~ 823 (932)
..-
T Consensus 252 ~hR 254 (584)
T PRK13406 252 APR 254 (584)
T ss_pred Hhh
Confidence 653
No 26
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.79 E-value=2.4e-18 Score=191.71 Aligned_cols=255 Identities=24% Similarity=0.292 Sum_probs=184.5
Q ss_pred hcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCC-------Cc--
Q 002353 500 IAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGK-------GA-- 570 (932)
Q Consensus 500 iap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~-------~s-- 570 (932)
....|.|++.+|.+|++..+... -| .+||-|+.|||||+++|+++.++|-...+.|. ..
T Consensus 15 pf~aivGqd~lk~aL~l~av~P~-----ig-------gvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~ 82 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVDPQ-----IG-------GALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEE 82 (423)
T ss_pred chhhhcCchHHHHHHhhhhcccc-----cc-------eeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhh
Confidence 45568999999999999865431 11 79999999999999999999999865433222 00
Q ss_pred ----------------------cccc---------ccceee--cCcccchhhhccCceeccCCCeeeeccccccCcchhh
Q 002353 571 ----------------------SAVG---------LTAAVH--KDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRV 617 (932)
Q Consensus 571 ----------------------s~~g---------Lta~v~--kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~ 617 (932)
..++ +.+++. +-...|...++||.|..|++||++|||++.+++..++
T Consensus 83 ~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd 162 (423)
T COG1239 83 MCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVD 162 (423)
T ss_pred hhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHH
Confidence 0111 222211 1113366678899999999999999999999999999
Q ss_pred hHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHH
Q 002353 618 SIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKF 697 (932)
Q Consensus 618 ~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~ 697 (932)
.||.+++.|.-.+.+.|+....++++.+|||+||..| .|.++||+||.+.+-+--..+......+.+.
T Consensus 163 ~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeG------------eLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r 230 (423)
T COG1239 163 ALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEG------------ELRPQLLDRFGLEVDTHYPLDLEERVEIIRR 230 (423)
T ss_pred HHHHHHHhCCceeeeCceeeccCccEEEEeecCcccc------------ccchhhHhhhcceeeccCCCCHHHHHHHHHH
Confidence 9999999987778899999999999999999999866 7899999999999987444444444444443
Q ss_pred HHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHH----------HHHHHHHHhhcCCC--cCChhHHHHHH
Q 002353 698 VIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDL----------LKKYITYAKLNVFP--RLHDPDMEKLT 765 (932)
Q Consensus 698 vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----------LrkyI~yar~~~~P--~Ls~ea~~~L~ 765 (932)
.+.. . ..|..+ ||.-|.-||+. .| .+++.+..+|.
T Consensus 231 ~~~f--~------------------------------~~Pe~f~~~~~~~~~~lR~~ii~ar~~-l~~V~l~~~~~~~ia 277 (423)
T COG1239 231 RLAF--E------------------------------AVPEAFLEKYADAQRALRARIIAARSL-LSEVELDDDAETKIA 277 (423)
T ss_pred HHHh--h------------------------------cCcHHHHHHHHHHHHHHHHHHHHHHhc-cccccCcHHHHHHHH
Confidence 3321 0 123334 44344445542 33 46666666665
Q ss_pred HHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH
Q 002353 766 HVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLL 820 (932)
Q Consensus 766 ~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~ 820 (932)
..-. ... + -+.|.--.++|.|.|+|.+.++.+|+.+|+.+|+.+..
T Consensus 278 ~~~~----~~~----v-~g~radi~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~l 323 (423)
T COG1239 278 ELCA----RLA----V-DGHRADIVVVRAAKALAALRGRTEVEEEDIREAAELAL 323 (423)
T ss_pred HHHH----Hhc----c-CCCchhhHHHHHHHHHHHhcCceeeehhhHHHHHhhhh
Confidence 5432 221 1 12566778899999999999999999999999988864
No 27
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.78 E-value=1.4e-18 Score=194.63 Aligned_cols=286 Identities=13% Similarity=0.156 Sum_probs=178.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc---EEe--cCCCccc--ccccceeecCcccchhhhccCceeccCCCeeeecccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA---VYT--TGKGASA--VGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFD 609 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~---v~~--~g~~ss~--~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~d 609 (932)
+|||+|++||||+.+|+++|..++++ ++. ++..... ....++..+...+|......|.+..|++|+|||||++
T Consensus 31 pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~ 110 (326)
T PRK11608 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELA 110 (326)
T ss_pred CEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhccCCCeEEeCChh
Confidence 99999999999999999999988753 222 1111100 0111122222233333334788899999999999999
Q ss_pred ccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccE-EEEecCCCCh
Q 002353 610 KMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDV-LCVVKDVVDP 688 (932)
Q Consensus 610 km~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDl-i~~l~D~~d~ 688 (932)
.|+...|..|+.+++.+.+ .+.|.....+.+++||+++|..... ....-.+...|+.||.. .+.|....+.
T Consensus 111 ~L~~~~Q~~L~~~l~~~~~--~~~g~~~~~~~~~RiI~~s~~~l~~------l~~~g~f~~dL~~~l~~~~i~lPpLReR 182 (326)
T PRK11608 111 TAPMLVQEKLLRVIEYGEL--ERVGGSQPLQVNVRLVCATNADLPA------MVAEGKFRADLLDRLAFDVVQLPPLRER 182 (326)
T ss_pred hCCHHHHHHHHHHHhcCcE--EeCCCCceeeccEEEEEeCchhHHH------HHHcCCchHHHHHhcCCCEEECCChhhh
Confidence 9999999999999998874 4556667788899999999985311 11222566778888854 3333222222
Q ss_pred hHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHHH
Q 002353 689 VVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTHV 767 (932)
Q Consensus 689 ~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~ 767 (932)
.. |...|...+|+++.. +.+ .+.|.+++++...|..|
T Consensus 183 ~e-----------------------------------------DI~~L~~~fl~~~~~~~~~-~~~~~~s~~al~~L~~y 220 (326)
T PRK11608 183 QS-----------------------------------------DIMLMAEHFAIQMCRELGL-PLFPGFTERARETLLNY 220 (326)
T ss_pred hh-----------------------------------------hHHHHHHHHHHHHHHHhCC-CCCCCCCHHHHHHHHhC
Confidence 11 222223334444321 111 12368999999999998
Q ss_pred HHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHhhhhcchh
Q 002353 768 YAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSFISTQKFGVQKALQRSFRKYMTFKK 847 (932)
Q Consensus 768 Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~~~~~k~s~~~~l~~~f~~~~~~~~ 847 (932)
+||+|+|+|+++++.+...+. ...++.+++.. ..+... ......... ....-.....
T Consensus 221 ------------~WPGNvrEL~~vl~~a~~~~~---~~~~~~~~l~~------~~~~~~-~~~~~~~~~-~~~~~~~~~~ 277 (326)
T PRK11608 221 ------------RWPGNIRELKNVVERSVYRHG---TSEYPLDNIII------DPFKRR-PAEEAIAVS-ETTSLPTLPL 277 (326)
T ss_pred ------------CCCcHHHHHHHHHHHHHHhcC---CCCCchhhccc------cccccc-ccccccccc-cccccccccc
Confidence 999999999999998766543 33444444310 000000 000000000 0000000000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHhcCc
Q 002353 848 EYNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQELEI 899 (932)
Q Consensus 848 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~i 899 (932)
...+.+..+.+.+|..+|+..+.+.. .++..++|+..+|++|+++|||
T Consensus 278 ~l~~~l~~~Er~~I~~aL~~~~gn~~----~aA~~LGIsR~tLyrklk~~gi 325 (326)
T PRK11608 278 DLREWQHQQEKELLQRSLQQAKFNQK----RAAELLGLTYHQLRALLKKHQI 325 (326)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHHhCCCHHHHHHHHHHcCC
Confidence 22344567889999999998877665 7788999999999999999997
No 28
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.78 E-value=1.1e-18 Score=195.57 Aligned_cols=293 Identities=13% Similarity=0.127 Sum_probs=180.6
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCc---EEe--cCCCcc--cccccceeecCcccchhhhccCceeccCCCeeeeccc
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRA---VYT--TGKGAS--AVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEF 608 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~---v~~--~g~~ss--~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~ 608 (932)
.+|||+|++||||+.+|+++|..+++. +.. ++.... .....++..+..++|.....+|.+..|++|++||||+
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei 102 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDEL 102 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCCCCEEEeCCh
Confidence 499999999999999999999988753 222 211110 0111223333444554445678899999999999999
Q ss_pred cccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEE-EecCCCC
Q 002353 609 DKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLC-VVKDVVD 687 (932)
Q Consensus 609 dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~-~l~D~~d 687 (932)
+.|+...|..|+.+++.+. +.+.|.....+.+++||+|+|...... ...-.+.+.|+.||..+. .|....+
T Consensus 103 ~~L~~~~Q~~Ll~~l~~~~--~~~~g~~~~~~~~~RiI~at~~~l~~~------~~~g~fr~dL~~rl~~~~i~lPpLRe 174 (329)
T TIGR02974 103 ATASLLVQEKLLRVIEYGE--FERVGGSQTLQVDVRLVCATNADLPAL------AAEGRFRADLLDRLAFDVITLPPLRE 174 (329)
T ss_pred HhCCHHHHHHHHHHHHcCc--EEecCCCceeccceEEEEechhhHHHH------hhcCchHHHHHHHhcchhcCCCchhh
Confidence 9999999999999999887 445677778889999999999854211 112245667777775432 2211111
Q ss_pred hhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHH
Q 002353 688 PVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTH 766 (932)
Q Consensus 688 ~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~ 766 (932)
. ..|...|...+|.+|.. +.+. +.+.|+++|.+.|..
T Consensus 175 R-----------------------------------------~eDI~~L~~~fl~~~~~~~~~~-~~~~ls~~a~~~L~~ 212 (329)
T TIGR02974 175 R-----------------------------------------QEDIMLLAEHFAIRMARELGLP-LFPGFTPQAREQLLE 212 (329)
T ss_pred h-----------------------------------------hhhHHHHHHHHHHHHHHHhCCC-CCCCcCHHHHHHHHh
Confidence 1 12222233344444322 1111 116899999999999
Q ss_pred HHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH----hhhhhhhhh-chHHHHHHHHhh
Q 002353 767 VYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLL----DSFISTQKF-GVQKALQRSFRK 841 (932)
Q Consensus 767 ~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~----~S~~~~~k~-s~~~~l~~~f~~ 841 (932)
| .||+|+|+|+++|+.+...+. .+.++.+|+........ ......... .........-..
T Consensus 213 y------------~WPGNvrEL~n~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (329)
T TIGR02974 213 Y------------HWPGNVRELKNVVERSVYRHG---LEEAPIDEIIIDPFASPWRPKQAAPAVDEVNSTPTDLPSPSSI 277 (329)
T ss_pred C------------CCCchHHHHHHHHHHHHHhCC---CCccchhhccccccccccccccccccccccccccccccccccc
Confidence 8 999999999999987666543 33555555310000000 000000000 000000000000
Q ss_pred hhcchhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHhc
Q 002353 842 YMTFKKEYNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQEL 897 (932)
Q Consensus 842 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~ 897 (932)
-........+.+..+++.+|..+|+..+.+.. .++..++|+..+|++|+++|
T Consensus 278 ~~~~~~~l~~~l~~~E~~~I~~aL~~~~gn~~----~aA~~LGisr~tL~rklkk~ 329 (329)
T TIGR02974 278 AAAFPLDLKQAQQDYEIELLQQALAEAQFNQR----KAAELLGLTYHQLRGLLRKH 329 (329)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHHhCCCHHHHHHHHHhC
Confidence 00000123445677899999999998877666 77889999999999999985
No 29
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.77 E-value=5.7e-19 Score=209.13 Aligned_cols=287 Identities=18% Similarity=0.196 Sum_probs=185.9
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCc---EEe--cCCCcc--cccccceeecCcccchhhhccCceeccCCCeeeeccc
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRA---VYT--TGKGAS--AVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEF 608 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~---v~~--~g~~ss--~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~ 608 (932)
.+|||+|++||||+.+|+++|..+++. +.. ++.-.. .....++..+..++|...-..|.+..|++|++||||+
T Consensus 211 ~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI 290 (509)
T PRK05022 211 LNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEI 290 (509)
T ss_pred CcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhhcCCCEEEecCh
Confidence 399999999999999999999998753 221 111111 0111222333444444344578889999999999999
Q ss_pred cccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEE-EecCCCC
Q 002353 609 DKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLC-VVKDVVD 687 (932)
Q Consensus 609 dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~-~l~D~~d 687 (932)
+.|+...|..|+.+++.+.+ .+.|.....+.+++||||||...... ...-.+...|+.|+..+- .|....+
T Consensus 291 ~~L~~~~Q~~Ll~~l~~~~~--~~~g~~~~~~~~~RiI~~t~~~l~~~------~~~~~f~~dL~~rl~~~~i~lPpLre 362 (509)
T PRK05022 291 GELPLALQAKLLRVLQYGEI--QRVGSDRSLRVDVRVIAATNRDLREE------VRAGRFRADLYHRLSVFPLSVPPLRE 362 (509)
T ss_pred hhCCHHHHHHHHHHHhcCCE--eeCCCCcceecceEEEEecCCCHHHH------HHcCCccHHHHhcccccEeeCCCchh
Confidence 99999999999999998874 45666677788999999999864211 112245666776765432 2211111
Q ss_pred hhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHH
Q 002353 688 PVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTH 766 (932)
Q Consensus 688 ~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~ 766 (932)
. ..|...|...+|++|.. +.+ -.+.++++|...|..
T Consensus 363 R-----------------------------------------~eDI~~L~~~fl~~~~~~~~~--~~~~~s~~a~~~L~~ 399 (509)
T PRK05022 363 R-----------------------------------------GDDVLLLAGYFLEQNRARLGL--RSLRLSPAAQAALLA 399 (509)
T ss_pred c-----------------------------------------hhhHHHHHHHHHHHHHHHcCC--CCCCCCHHHHHHHHh
Confidence 1 12223333445554422 211 246899999999999
Q ss_pred HHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCC---CcCHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHhhhh
Q 002353 767 VYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQ---HVTQEDVNMAIRVLLDSFISTQKFGVQKALQRSFRKYM 843 (932)
Q Consensus 767 ~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~---~Vt~~Dv~~AI~l~~~S~~~~~k~s~~~~l~~~f~~~~ 843 (932)
| .||+|+|+|+++|+.+...|.-.... .|+.+|+.... .+-......... . ..
T Consensus 400 y------------~WPGNvrEL~~~i~ra~~~~~~~~~~~~~~i~~~~l~~~~----~~~~~~~~~~~~-------~-~~ 455 (509)
T PRK05022 400 Y------------DWPGNVRELEHVISRAALLARARGAGRIVTLEAQHLDLPA----EVALPPPEAAAA-------P-AA 455 (509)
T ss_pred C------------CCCCcHHHHHHHHHHHHHhcCCCccCccceecHHHcCccc----ccccCccccccc-------c-cc
Confidence 8 99999999999999888777633211 46666653210 000000000000 0 00
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHhcCccc
Q 002353 844 TFKKEYNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQELEIYD 901 (932)
Q Consensus 844 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~i~~ 901 (932)
.......+.+..++|++|.++|+..+.+.. .++..++|+..+|++|+++|||.+
T Consensus 456 ~~~~~l~~~~~~~Er~~I~~aL~~~~gn~~----~aA~~LGisr~tL~rklk~~gi~~ 509 (509)
T PRK05022 456 VVSQNLREATEAFQRQLIRQALAQHQGNWA----AAARALELDRANLHRLAKRLGLKD 509 (509)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHcCCCHH----HHHHHhCCCHHHHHHHHHHcCCCC
Confidence 001122345667889999999998887665 778899999999999999999964
No 30
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.76 E-value=2.2e-17 Score=198.18 Aligned_cols=171 Identities=17% Similarity=0.244 Sum_probs=130.6
Q ss_pred hccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccc-----e---eEeeccceEEEeeeCCCCCccCCCCC
Q 002353 590 LEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAG-----I---VTSLQARCSVIAAANPVGGRYDSSKT 661 (932)
Q Consensus 590 le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kag-----i---~~~l~ar~sIIAAaNp~~Gry~~~~~ 661 (932)
+++|++..|++|+|||||++.|++..|..|+++|+++++.+.... . ....++++.+|+++|+..
T Consensus 208 i~~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~-------- 279 (608)
T TIGR00764 208 VEAGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDD-------- 279 (608)
T ss_pred CCCCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHH--------
Confidence 479999999999999999999999999999999999998874431 1 234578999999999842
Q ss_pred cccccCCChhhhcccc---EEEEecCCCChhH--hHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCC
Q 002353 662 FSENVELTDPIISRFD---VLCVVKDVVDPVV--DEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEIL 736 (932)
Q Consensus 662 ~~~ni~L~~~LLsRFD---li~~l~D~~d~~~--D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 736 (932)
...++++|++||+ +.+.+.+..+... ...++.
T Consensus 280 ---l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~---------------------------------------- 316 (608)
T TIGR00764 280 ---LEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQ---------------------------------------- 316 (608)
T ss_pred ---HhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHH----------------------------------------
Confidence 1268999999999 6666544322211 112222
Q ss_pred CHHHHHHHHH-HHhhc-CCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHH
Q 002353 737 PQDLLKKYIT-YAKLN-VFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNM 814 (932)
Q Consensus 737 ~~~~LrkyI~-yar~~-~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~ 814 (932)
|+. .++++ ..|.|+++|...|.++|..+ ....+.++++.|+|.+|+|.|.+.|+.+.+..|+.+||.+
T Consensus 317 -------~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~---ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~ 386 (608)
T TIGR00764 317 -------FVAQEVKKDGRIPHFTRDAVEEIVREAQRR---AGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLK 386 (608)
T ss_pred -------HHHHHHHHhCCCCcCCHHHHHHHHHHHHHH---HhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHH
Confidence 222 23333 46789999999999987643 3344579999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 002353 815 AIRVLLD 821 (932)
Q Consensus 815 AI~l~~~ 821 (932)
|+.....
T Consensus 387 Ai~~~~~ 393 (608)
T TIGR00764 387 AKKLAKT 393 (608)
T ss_pred HHHHHHH
Confidence 9887644
No 31
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.76 E-value=2.9e-17 Score=184.46 Aligned_cols=278 Identities=21% Similarity=0.273 Sum_probs=193.1
Q ss_pred hHHHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEe--cCCC
Q 002353 492 IGERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYT--TGKG 569 (932)
Q Consensus 492 i~~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~--~g~~ 569 (932)
....+...+.+.++|.+.++..+++++..|. |+||.|+||||||.|++.+++.....++. +...
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~~~~--------------~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~ 79 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALLAGG--------------HVLLEGPPGVGKTLLARALARALGLPFVRIQCTPD 79 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHHcCC--------------CEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCC
Confidence 4456777788889999999999988887662 99999999999999999999998866554 2223
Q ss_pred cccccccceeecCcc---cchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeecccee-EeeccceEE
Q 002353 570 ASAVGLTAAVHKDPV---TREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIV-TSLQARCSV 645 (932)
Q Consensus 570 ss~~gLta~v~kd~~---~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~-~~l~ar~sI 645 (932)
.....+++....... ++.+.+.+|.+..+.+++|++|||++.++..+++|+++|+.+.+++ .|.. ..++..+.|
T Consensus 80 l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv--~~~~~~~~~~~f~v 157 (329)
T COG0714 80 LLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTV--PGLTTIRLPPPFIV 157 (329)
T ss_pred CCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEE--CCcCCcCCCCCCEE
Confidence 334445554444433 5667788899988877899999999999999999999999999888 4444 778899999
Q ss_pred EeeeCCCC--CccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhh
Q 002353 646 IAAANPVG--GRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEED 723 (932)
Q Consensus 646 IAAaNp~~--Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~ 723 (932)
|||+||.. |.| .+++++++||-+...+ +.|+....+.+. +.... ..... .
T Consensus 158 iaT~Np~e~~g~~----------~l~eA~ldRf~~~~~v-~yp~~~~e~~~i---~~~~~-~~~~~---~---------- 209 (329)
T COG0714 158 IATQNPGEYEGTY----------PLPEALLDRFLLRIYV-DYPDSEEEERII---LARVG-GVDEL---D---------- 209 (329)
T ss_pred EEccCccccCCCc----------CCCHHHHhhEEEEEec-CCCCchHHHHHH---HHhCc-ccccc---c----------
Confidence 99999754 222 7899999999877776 777555443322 11111 10000 0
Q ss_pred hhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhC
Q 002353 724 IQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRL 803 (932)
Q Consensus 724 ~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~l 803 (932)
......+.++...+.++-...+ ...++++..+.+.......|.... -.+..+.|....++..+.+.|.+..
T Consensus 210 ----~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~s~r~~~~~~~~~~~~a~~~~ 280 (329)
T COG0714 210 ----LESLVKPVLSDEELLRLQKEVK---KVPVSDEVIDYIVTLVAALREAPD--VALGASPRASLALLAALRALALLDG 280 (329)
T ss_pred ----cchhhhhhhCHHHHHHHHhhhc---cCCchHHHHHHHHHHHHhhccccc--hhccCCchhHHHHHHHHHhhhhhcC
Confidence 0000111223222222222111 345666667666666555554332 1345688999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHhh
Q 002353 804 RQHVTQEDVNMAIRVLLDS 822 (932)
Q Consensus 804 r~~Vt~~Dv~~AI~l~~~S 822 (932)
+..+..+|+.........+
T Consensus 281 ~~~~~~~dv~~~~~~~~~~ 299 (329)
T COG0714 281 RDAVIPDDVKALAEPALAH 299 (329)
T ss_pred ccccCHHHHHHHhhhhhhh
Confidence 9999999997765554443
No 32
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.74 E-value=9.6e-18 Score=197.04 Aligned_cols=296 Identities=18% Similarity=0.156 Sum_probs=188.0
Q ss_pred CCceEEEeCCCCchHHHHHHHHHHhCCCc---EEe--cCCCcc--cccccceeecCcccchhhhccCceeccCCCeeeec
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEKTGQRA---VYT--TGKGAS--AVGLTAAVHKDPVTREWTLEGGALVLADRGICLID 606 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~~~~r~---v~~--~g~~ss--~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~ID 606 (932)
.+.+|||.|++||||+.+|+++|..+++. +.. ++.-.. .....++..+...+|......|.+..|++|++|||
T Consensus 160 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~ 239 (469)
T PRK10923 160 SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 (469)
T ss_pred cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEe
Confidence 34599999999999999999999988753 121 111000 01111222233344444456788999999999999
Q ss_pred cccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEE-EEecCC
Q 002353 607 EFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVL-CVVKDV 685 (932)
Q Consensus 607 E~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli-~~l~D~ 685 (932)
|++.|+...|..|+.+++.+.+. +.|.....+.+++||+|+|..... ....-.+.+.|+.||..+ +.+...
T Consensus 240 ~i~~l~~~~q~~L~~~l~~~~~~--~~~~~~~~~~~~rii~~~~~~l~~------~~~~~~~~~~L~~~l~~~~i~~PpL 311 (469)
T PRK10923 240 EIGDMPLDVQTRLLRVLADGQFY--RVGGYAPVKVDVRIIAATHQNLEQ------RVQEGKFREDLFHRLNVIRVHLPPL 311 (469)
T ss_pred ccccCCHHHHHHHHHHHhcCcEE--eCCCCCeEEeeEEEEEeCCCCHHH------HHHcCCchHHHHHHhcceeecCCCc
Confidence 99999999999999999988754 455555667889999999875311 112235667788888533 333221
Q ss_pred CChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhc--CCCcCChhHHHH
Q 002353 686 VDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLN--VFPRLHDPDMEK 763 (932)
Q Consensus 686 ~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~--~~P~Ls~ea~~~ 763 (932)
.+.. .+...|...+|++| ++.. -.+.++++|...
T Consensus 312 reR~-----------------------------------------~Di~~l~~~~l~~~---~~~~~~~~~~~~~~a~~~ 347 (469)
T PRK10923 312 RERR-----------------------------------------EDIPRLARHFLQVA---ARELGVEAKLLHPETEAA 347 (469)
T ss_pred ccch-----------------------------------------hhHHHHHHHHHHHH---HHHcCCCCCCcCHHHHHH
Confidence 1111 22222333344443 3321 134699999999
Q ss_pred HHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH-hhhhhh-hhhchHHHHHHHHhh
Q 002353 764 LTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLL-DSFIST-QKFGVQKALQRSFRK 841 (932)
Q Consensus 764 L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~-~S~~~~-~k~s~~~~l~~~f~~ 841 (932)
|..| .||+|+|+|+++|+.+...+. ..+|+.+|+...+.... .+.... ...+....+..-+..
T Consensus 348 L~~~------------~wpgNv~eL~~~i~~~~~~~~---~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (469)
T PRK10923 348 LTRL------------AWPGNVRQLENTCRWLTVMAA---GQEVLIQDLPGELFESTVPESTSQMQPDSWATLLAQWADR 412 (469)
T ss_pred HHhC------------CCCChHHHHHHHHHHHHHhCC---CCcccHHHCcHhhhcccccccccccccccccccccccccc
Confidence 9998 999999999999998876665 66899998865432100 000000 000000000000000
Q ss_pred hhc-c-hhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHhcCcc
Q 002353 842 YMT-F-KKEYNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQELEIY 900 (932)
Q Consensus 842 ~~~-~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~i~ 900 (932)
-+. . .......+..+++.+|..+|+..+.+.. .++..++|+..+|++|+++|||.
T Consensus 413 ~~~~~~~~~l~~~l~~~E~~~i~~aL~~~~gn~~----~aA~~Lgisr~tL~rkl~~~~i~ 469 (469)
T PRK10923 413 ALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQ----EAARLLGWGRNTLTRKLKELGME 469 (469)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHhCCCHH----HHHHHhCCCHHHHHHHHHHhCCC
Confidence 000 0 0122345678899999999998877665 67899999999999999999984
No 33
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.74 E-value=4.9e-18 Score=183.19 Aligned_cols=208 Identities=18% Similarity=0.198 Sum_probs=150.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCc--ccch------hhhccCceeccCCCeeeeccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDP--VTRE------WTLEGGALVLADRGICLIDEF 608 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~--~~g~------~~le~Gal~lAd~GIl~IDE~ 608 (932)
++||.|++||||..+||++|..+||+ ......+.++...+. .+.- -.-+.|.+.+|++|++|+|||
T Consensus 229 PLLI~GeTGTGKdLlAkaCH~~S~R~------~~pFlalNCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeI 302 (511)
T COG3283 229 PLLITGETGTGKDLLAKACHLASPRH------SKPFLALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEI 302 (511)
T ss_pred CeEEecCCCchHHHHHHHHhhcCccc------CCCeeEeecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehh
Confidence 89999999999999999999999985 222333333322111 1111 123468899999999999999
Q ss_pred cccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCCh
Q 002353 609 DKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDP 688 (932)
Q Consensus 609 dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~ 688 (932)
..|++..|.+|+.++.+|+ +.+.|......++++||+||..+...+.....| |-||++.+
T Consensus 303 gEmSp~lQaKLLRFL~DGt--FRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~f------------ReDLfyRL------ 362 (511)
T COG3283 303 GEMSPRLQAKLLRFLNDGT--FRRVGEDHEVHVDVRVICATQVNLVELVQKGKF------------REDLFYRL------ 362 (511)
T ss_pred hhcCHHHHHHHHHHhcCCc--eeecCCcceEEEEEEEEecccccHHHHHhcCch------------HHHHHHHh------
Confidence 9999999999999999998 678999999999999999998765333333332 45555544
Q ss_pred hHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHH
Q 002353 689 VVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVY 768 (932)
Q Consensus 689 ~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y 768 (932)
.||..+..... ....+..++.+.++.++..--. ...|+|+.+....|.+|
T Consensus 363 --------NVLtl~~PpLR--------------------er~~di~pL~e~Fv~q~s~elg-~p~pkl~~~~~~~L~~y- 412 (511)
T COG3283 363 --------NVLTLNLPPLR--------------------ERPQDIMPLAELFVQQFSDELG-VPRPKLAADLLTVLTRY- 412 (511)
T ss_pred --------heeeecCCccc--------------------cCcccchHHHHHHHHHHHHHhC-CCCCccCHHHHHHHHHc-
Confidence 23333332221 1234455666777777766433 36899999999999998
Q ss_pred HHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHH
Q 002353 769 AELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNM 814 (932)
Q Consensus 769 ~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~ 814 (932)
.||+|+|||.+.|-.|-+... ...++.+|+..
T Consensus 413 -----------~WpGNVRqL~N~iyRA~s~~E---g~~l~i~~i~L 444 (511)
T COG3283 413 -----------AWPGNVRQLKNAIYRALTLLE---GYELRIEDILL 444 (511)
T ss_pred -----------CCCccHHHHHHHHHHHHHHhc---cCccchhhccc
Confidence 999999999999987766544 67778777753
No 34
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.74 E-value=3.5e-18 Score=208.09 Aligned_cols=274 Identities=12% Similarity=0.118 Sum_probs=177.7
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCc---EEe--cCCCcc---cccccceeecCcccchhhhccCceeccCCCeeeecc
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRA---VYT--TGKGAS---AVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDE 607 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~---v~~--~g~~ss---~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE 607 (932)
.+|||+|++||||+.+|+++|..+++. ++. ++.-.. ...|.+... .+.....+|.+..|++|++||||
T Consensus 349 ~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~----~~~~~~~~g~~~~a~~GtL~lde 424 (638)
T PRK11388 349 FPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDR----TDSENGRLSKFELAHGGTLFLEK 424 (638)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCC----cCccCCCCCceeECCCCEEEEcC
Confidence 389999999999999999999987753 222 111110 011222211 01112346788899999999999
Q ss_pred ccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCC
Q 002353 608 FDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVD 687 (932)
Q Consensus 608 ~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d 687 (932)
|+.|+...|..|+.+++.+.+ .+.|.....+.+++||+|||......... -.+...|+.|+..+-+-
T Consensus 425 i~~l~~~~Q~~Ll~~l~~~~~--~~~~~~~~~~~~~riI~~t~~~l~~~~~~------~~f~~dL~~~l~~~~i~----- 491 (638)
T PRK11388 425 VEYLSPELQSALLQVLKTGVI--TRLDSRRLIPVDVRVIATTTADLAMLVEQ------NRFSRQLYYALHAFEIT----- 491 (638)
T ss_pred hhhCCHHHHHHHHHHHhcCcE--EeCCCCceEEeeEEEEEeccCCHHHHHhc------CCChHHHhhhhceeEEe-----
Confidence 999999999999999998875 35566667788999999999854221111 13334455555433221
Q ss_pred hhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHH
Q 002353 688 PVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHV 767 (932)
Q Consensus 688 ~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~ 767 (932)
..+.. .+..|...|-..+|+++.. +....+.+++++.+.|.+|
T Consensus 492 ---------------lPpLr--------------------eR~~Di~~L~~~~l~~~~~--~~~~~~~~s~~a~~~L~~y 534 (638)
T PRK11388 492 ---------------IPPLR--------------------MRREDIPALVNNKLRSLEK--RFSTRLKIDDDALARLVSY 534 (638)
T ss_pred ---------------CCChh--------------------hhhhHHHHHHHHHHHHHHH--HhCCCCCcCHHHHHHHHcC
Confidence 10000 0112223334445555432 1112357999999999998
Q ss_pred HHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHhhhhcchh
Q 002353 768 YAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSFISTQKFGVQKALQRSFRKYMTFKK 847 (932)
Q Consensus 768 Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~~~~~k~s~~~~l~~~f~~~~~~~~ 847 (932)
.||+|+|+|+++++.+...+. ...|+.+|+...+.. .. ..... . ..-+.
T Consensus 535 ------------~WPGNvreL~~~l~~~~~~~~---~~~i~~~~lp~~~~~--~~---~~~~~-~-------~~~~~--- 583 (638)
T PRK11388 535 ------------RWPGNDFELRSVIENLALSSD---NGRIRLSDLPEHLFT--EQ---ATDDV-S-------ATRLS--- 583 (638)
T ss_pred ------------CCCChHHHHHHHHHHHHHhCC---CCeecHHHCchhhhc--cc---ccccc-c-------ccccc---
Confidence 999999999999998766543 557898988765421 00 00000 0 00000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHhcCc
Q 002353 848 EYNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQELEI 899 (932)
Q Consensus 848 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~i 899 (932)
....|..+++++|.++|+..+.+.. .++..++|+..+|++|+++|||
T Consensus 584 -~~~~l~~~E~~~i~~al~~~~gn~~----~aA~~LGisR~TLyrklk~~~i 630 (638)
T PRK11388 584 -TSLSLAELEKEAIINAAQVCGGRIQ----EMAALLGIGRTTLWRKMKQHGI 630 (638)
T ss_pred -cchhHHHHHHHHHHHHHHHhCCCHH----HHHHHHCCCHHHHHHHHHHcCC
Confidence 0123567889999999998777655 7889999999999999999998
No 35
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.73 E-value=1.4e-17 Score=198.71 Aligned_cols=293 Identities=16% Similarity=0.164 Sum_probs=183.0
Q ss_pred CceEEEeCCCCchHHHHHHHHHHhCCCc---EEe--cCCCccc--ccccceeecCcccchhhhccCceeccCCCeeeecc
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKTGQRA---VYT--TGKGASA--VGLTAAVHKDPVTREWTLEGGALVLADRGICLIDE 607 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~~~r~---v~~--~g~~ss~--~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE 607 (932)
+.+|||+|++||||+.+|+++|..+++. +.. ++..... ....++..+...+|.....+|.+..|++|++||||
T Consensus 219 ~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~lde 298 (534)
T TIGR01817 219 NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDE 298 (534)
T ss_pred CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEec
Confidence 3499999999999999999999988753 222 1111100 11112223333344333457888899999999999
Q ss_pred ccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEE-ecCCC
Q 002353 608 FDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCV-VKDVV 686 (932)
Q Consensus 608 ~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~-l~D~~ 686 (932)
++.|+...|..|+.+++.+.+. +.|.....+.+++||+|+|...... ...-.+.+.|+.|+..+-+ +....
T Consensus 299 i~~L~~~~Q~~Ll~~l~~~~~~--~~~~~~~~~~~~riI~~s~~~l~~~------~~~~~f~~~L~~rl~~~~i~lPpLr 370 (534)
T TIGR01817 299 IGEISPAFQAKLLRVLQEGEFE--RVGGNRTLKVDVRLVAATNRDLEEA------VAKGEFRADLYYRINVVPIFLPPLR 370 (534)
T ss_pred hhhCCHHHHHHHHHHHhcCcEE--ECCCCceEeecEEEEEeCCCCHHHH------HHcCCCCHHHHHHhcCCeeeCCCcc
Confidence 9999999999999999988743 4555566778899999999754211 1223566777777765433 21111
Q ss_pred ChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHH
Q 002353 687 DPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLT 765 (932)
Q Consensus 687 d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~ 765 (932)
+. ..|...|...+|+++.. +. ..+.+++++.+.|.
T Consensus 371 eR-----------------------------------------~eDi~~L~~~~l~~~~~~~~---~~~~~s~~a~~~L~ 406 (534)
T TIGR01817 371 ER-----------------------------------------REDIPLLAEAFLEKFNRENG---RPLTITPSAIRVLM 406 (534)
T ss_pred cc-----------------------------------------cccHHHHHHHHHHHHHHHcC---CCCCCCHHHHHHHH
Confidence 11 12223333444444322 11 23689999999999
Q ss_pred HHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH-hhhhhhhh---hchHHH-----HH
Q 002353 766 HVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLL-DSFISTQK---FGVQKA-----LQ 836 (932)
Q Consensus 766 ~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~-~S~~~~~k---~s~~~~-----l~ 836 (932)
+| .||+|+|+|+++++.+...+. ...|+.+|+...+.-.. ..+..+.+ .+.... ..
T Consensus 407 ~~------------~WPGNvrEL~~v~~~a~~~~~---~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (534)
T TIGR01817 407 SC------------KWPGNVRELENCLERTATLSR---SGTITRSDFSCQSGQCLSPMLAKTCPHGHISIDPLAGTTPPH 471 (534)
T ss_pred hC------------CCCChHHHHHHHHHHHHHhCC---CCcccHHHCchhhccccccccccccccccccccccccccccc
Confidence 98 999999999999998766554 66899988753221000 00000000 000000 00
Q ss_pred HHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHhcCc
Q 002353 837 RSFRKYMTFKKEYNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQELEI 899 (932)
Q Consensus 837 ~~f~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~i 899 (932)
.....-....... ..+...+|+++.++|+..+.+.. .++..++|+..+|++|+++|||
T Consensus 472 ~~~~~~~~~~~~~-~~~~~~Er~~i~~aL~~~~gn~~----~aA~~LGisr~tLy~klk~~gi 529 (534)
T TIGR01817 472 SPASAALPGEPGL-SGPTLSERERLIAALEQAGWVQA----KAARLLGMTPRQVGYALRKLNI 529 (534)
T ss_pred ccccccccccccc-hhHHHHHHHHHHHHHHHhCCCHH----HHHHHHCCCHHHHHHHHHHcCC
Confidence 0000000000001 11344789999999998887665 7888999999999999999998
No 36
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.73 E-value=2.6e-17 Score=185.32 Aligned_cols=288 Identities=15% Similarity=0.144 Sum_probs=175.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc---EEe---cCCCc-ccccc-cceeecCcccchhhhccCceeccCCCeeeeccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA---VYT---TGKGA-SAVGL-TAAVHKDPVTREWTLEGGALVLADRGICLIDEF 608 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~---v~~---~g~~s-s~~gL-ta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~ 608 (932)
|||++|++||||+.+|+.+|..+.+. .|+ |+.-+ +...+ .+++.+..+||...-++|.+..|+||++|+|||
T Consensus 103 ~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI 182 (403)
T COG1221 103 PVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEI 182 (403)
T ss_pred cEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhh
Confidence 99999999999999999999887772 121 22211 11111 456777778887788899999999999999999
Q ss_pred cccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc-cccEEEEecCCCC
Q 002353 609 DKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS-RFDVLCVVKDVVD 687 (932)
Q Consensus 609 dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs-RFDli~~l~D~~d 687 (932)
..||+..|..|+.+||.+++ .+-|.....+.++++|+|||-..++. +.-...|++ |+.+++-|.....
T Consensus 183 ~~LP~~~Q~kLl~~le~g~~--~rvG~~~~~~~dVRli~AT~~~l~~~---------~~~g~dl~~rl~~~~I~LPpLrE 251 (403)
T COG1221 183 HRLPPEGQEKLLRVLEEGEY--RRVGGSQPRPVDVRLICATTEDLEEA---------VLAGADLTRRLNILTITLPPLRE 251 (403)
T ss_pred hhCCHhHHHHHHHHHHcCce--EecCCCCCcCCCceeeeccccCHHHH---------HHhhcchhhhhcCceecCCChhh
Confidence 99999999999999999984 46777888899999999999754221 000023444 4444444422211
Q ss_pred hhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCC--cCChhHHHHHH
Q 002353 688 PVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFP--RLHDPDMEKLT 765 (932)
Q Consensus 688 ~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P--~Ls~ea~~~L~ 765 (932)
. ..++..+...+++.| +++.-.| ..+++|...|.
T Consensus 252 R-----------------------------------------~~Di~~L~e~Fl~~~---~~~l~~~~~~~~~~a~~~L~ 287 (403)
T COG1221 252 R-----------------------------------------KEDILLLAEHFLKSE---ARRLGLPLSVDSPEALRALL 287 (403)
T ss_pred c-----------------------------------------hhhHHHHHHHHHHHH---HHHcCCCCCCCCHHHHHHHH
Confidence 1 112222333344433 4443333 44567888888
Q ss_pred HHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHhhhhcc
Q 002353 766 HVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSFISTQKFGVQKALQRSFRKYMTF 845 (932)
Q Consensus 766 ~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~~~~~k~s~~~~l~~~f~~~~~~ 845 (932)
.| .||+|+|+|+++|..+.+.|.... +..+|..-.+. ........ .........-.+...+..
T Consensus 288 ~y------------~~pGNirELkN~Ve~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~ 350 (403)
T COG1221 288 AY------------DWPGNIRELKNLVERAVAQASGEG---QDLEDLIISIR-LDELPGLN-DVPAGISLQLNLPELPLS 350 (403)
T ss_pred hC------------CCCCcHHHHHHHHHHHHHHhcccc---CCcccccchhh-hccccccc-cchhhhhhhhhhHHHhhh
Confidence 87 899999999999999999887433 33233222111 11100000 000000000001111111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHhcCcccc
Q 002353 846 KKEYNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQELEIYDL 902 (932)
Q Consensus 846 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~i~~~ 902 (932)
.. ...+........+.++......+. .++..++++..++.++++++++...
T Consensus 351 ~~--~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~lg~s~~~l~~~l~~~~~~~~ 401 (403)
T COG1221 351 LR--ETSLEQVEERLLQKALEQNKGNKK----KAARLLGISRKTLRYRLKKYGLTTF 401 (403)
T ss_pred hh--hhhhhHHHHHHHHHHHHHhhccHH----HHHHHcCCCHHHHHHHHHHhccccc
Confidence 11 111223333344455554444333 5667899999999999999987543
No 37
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.73 E-value=5.5e-18 Score=199.64 Aligned_cols=279 Identities=15% Similarity=0.145 Sum_probs=169.2
Q ss_pred ceEEEeCCCCchHHHHHHHHHHh--------CCCc---EEecCCCcc----cccccceeecCcccchh-hhccCceeccC
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKT--------GQRA---VYTTGKGAS----AVGLTAAVHKDPVTREW-TLEGGALVLAD 599 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~--------~~r~---v~~~g~~ss----~~gLta~v~kd~~~g~~-~le~Gal~lAd 599 (932)
.+|||+|++||||+.+|+++|.. +++. ++....+.- .....++..+..++|.. ...+|.+..|+
T Consensus 243 ~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~ 322 (538)
T PRK15424 243 AAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 322 (538)
T ss_pred CcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhccC
Confidence 39999999999999999999998 5542 222111110 01112222333344432 24578899999
Q ss_pred CCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEE
Q 002353 600 RGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVL 679 (932)
Q Consensus 600 ~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli 679 (932)
+|++|||||+.|+...|..|+.+++++.+ .+.|.....+.+++||+|||....... ..-.+...|+.|+..+
T Consensus 323 gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~--~r~G~~~~~~~dvRiIaat~~~L~~~v------~~g~Fr~dL~yrL~~~ 394 (538)
T PRK15424 323 GGTLFLDEIGEMPLPLQTRLLRVLEEKEV--TRVGGHQPVPVDVRVISATHCDLEEDV------RQGRFRRDLFYRLSIL 394 (538)
T ss_pred CCEEEEcChHhCCHHHHHHHHhhhhcCeE--EecCCCceeccceEEEEecCCCHHHHH------hcccchHHHHHHhcCC
Confidence 99999999999999999999999999874 467777788999999999998542111 1113444555555433
Q ss_pred EEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChh
Q 002353 680 CVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDP 759 (932)
Q Consensus 680 ~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~e 759 (932)
-+- .|+ ...+..|...|...+|++| ++. ....++++
T Consensus 395 ~I~-----------------------lPP-----------------LReR~eDI~~L~~~fl~~~---~~~-~~~~~~~~ 430 (538)
T PRK15424 395 RLQ-----------------------LPP-----------------LRERVADILPLAESFLKQS---LAA-LSAPFSAA 430 (538)
T ss_pred eec-----------------------CCC-----------------hhhchhHHHHHHHHHHHHH---HHH-cCCCCCHH
Confidence 221 110 0011122233333444443 222 22336776
Q ss_pred HHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhhhhhhhhchHHHHHHHH
Q 002353 760 DMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSFISTQKFGVQKALQRSF 839 (932)
Q Consensus 760 a~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~~~~~k~s~~~~l~~~f 839 (932)
+...+..+...|..- .||+|+|+|+++++.+...+.-.-...++.+++... ..+ +...
T Consensus 431 a~~~~~~a~~~L~~y-----~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~~~---~~~-~~~~------------- 488 (538)
T PRK15424 431 LRQGLQQCETLLLHY-----DWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQLL---LPE-LARE------------- 488 (538)
T ss_pred HHHhhHHHHHHHHhC-----CCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhhhh---ccc-cccc-------------
Confidence 664443333222221 899999999999987766543222235666654321 000 0000
Q ss_pred hhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHhcCcc
Q 002353 840 RKYMTFKKEYNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQELEIY 900 (932)
Q Consensus 840 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~i~ 900 (932)
. .. ... ....++++.++|+..+.+.. .++..++|++.+|++++++||..
T Consensus 489 ~--~~----~~~--~~~Er~~I~~~L~~~~Gn~~----~aA~~LGIsRtTL~RkLk~~g~~ 537 (538)
T PRK15424 489 S--AK----TPA--PRLLAATLQQALERFNGDKT----AAANYLGISRTTLWRRLKAEAKA 537 (538)
T ss_pred c--cc----cch--hHHHHHHHHHHHHHhCCCHH----HHHHHhCCCHHHHHHHHHHhCCC
Confidence 0 00 000 11367888888887776655 77889999999999999999864
No 38
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.73 E-value=3.3e-17 Score=193.21 Aligned_cols=282 Identities=16% Similarity=0.121 Sum_probs=175.4
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCc---EEecCCCccc----ccccceeecCcccchh-hhccCceeccCCCeeeecc
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRA---VYTTGKGASA----VGLTAAVHKDPVTREW-TLEGGALVLADRGICLIDE 607 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~---v~~~g~~ss~----~gLta~v~kd~~~g~~-~le~Gal~lAd~GIl~IDE 607 (932)
.+|||.|++||||+.+|+++|..+++. ++........ ....++..+..++|.. ...+|.+..|++|++||||
T Consensus 236 ~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLde 315 (526)
T TIGR02329 236 ATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDE 315 (526)
T ss_pred CcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhcCCceEEecC
Confidence 399999999999999999999987653 2221111110 1112223333344432 1357888999999999999
Q ss_pred ccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEE-EEecCCC
Q 002353 608 FDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVL-CVVKDVV 686 (932)
Q Consensus 608 ~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli-~~l~D~~ 686 (932)
++.|+...|..|+.+++++.+ .+.|.....+.+++||+|+|.....- ...-.+...|+.|+..+ +.+....
T Consensus 316 I~~Lp~~~Q~~Ll~~L~~~~~--~r~g~~~~~~~dvRiIaat~~~l~~~------v~~g~fr~dL~~rL~~~~I~lPPLR 387 (526)
T TIGR02329 316 IGEMPLPLQTRLLRVLEEREV--VRVGGTEPVPVDVRVVAATHCALTTA------VQQGRFRRDLFYRLSILRIALPPLR 387 (526)
T ss_pred hHhCCHHHHHHHHHHHhcCcE--EecCCCceeeecceEEeccCCCHHHH------hhhcchhHHHHHhcCCcEEeCCCch
Confidence 999999999999999998874 45676677888999999999864221 11224455666666532 3332221
Q ss_pred ChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHH
Q 002353 687 DPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTH 766 (932)
Q Consensus 687 d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~ 766 (932)
+.. .|.+.|...+|++| ++.. ...+++++...+..
T Consensus 388 eR~-----------------------------------------eDI~~L~~~fl~~~---~~~~-~~~~~~~a~~~~~~ 422 (526)
T TIGR02329 388 ERP-----------------------------------------GDILPLAAEYLVQA---AAAL-RLPDSEAAAQVLAG 422 (526)
T ss_pred hch-----------------------------------------hHHHHHHHHHHHHH---HHHc-CCCCCHHHHHHhHH
Confidence 211 22222333344443 2221 23488888877333
Q ss_pred HHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHhhhhcch
Q 002353 767 VYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSFISTQKFGVQKALQRSFRKYMTFK 846 (932)
Q Consensus 767 ~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~~~~~k~s~~~~l~~~f~~~~~~~ 846 (932)
.+-.|..- +||+|+|+|+++++.+...+...-...|+.+|+..... +. ... ... .. ...
T Consensus 423 ~~~~L~~y-----~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~~~~---~~-~~~-~~~---------~~--~~~ 481 (526)
T TIGR02329 423 VADPLQRY-----PWPGNVRELRNLVERLALELSAMPAGALTPDVLRALAP---EL-AEA-SGK---------GK--TSA 481 (526)
T ss_pred HHHHHHhC-----CCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhhhch---hh-ccc-ccc---------cc--cCc
Confidence 22222221 99999999999998877665422346788888653321 10 000 000 00 000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHh
Q 002353 847 KEYNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQE 896 (932)
Q Consensus 847 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~ 896 (932)
..... +..+.++++..+|+..+.++. .++..++|++.+|++++++
T Consensus 482 ~~l~~-~~~~Er~~I~~aL~~~~Gn~~----~aA~~LGIsRtTL~Rklk~ 526 (526)
T TIGR02329 482 LSLRE-RSRVEALAVRAALERFGGDRD----AAAKALGISRTTLWRRLKA 526 (526)
T ss_pred cchHH-HHHHHHHHHHHHHHHcCCCHH----HHHHHhCCCHHHHHHHHhC
Confidence 01111 346789999999998877665 7889999999999999874
No 39
>PRK15115 response regulator GlrR; Provisional
Probab=99.72 E-value=1.5e-17 Score=194.10 Aligned_cols=274 Identities=16% Similarity=0.203 Sum_probs=182.3
Q ss_pred CceEEEeCCCCchHHHHHHHHHHhCCCc---EEe--cCCCc-c-cccccceeecCcccchhhhccCceeccCCCeeeecc
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKTGQRA---VYT--TGKGA-S-AVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDE 607 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~~~r~---v~~--~g~~s-s-~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE 607 (932)
+.+|+|.|++||||+.+|+++|+.+++. +.. ++.-. . .....++..+...+|......|.+..+++|++||||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 236 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEc
Confidence 4489999999999999999999998753 221 11100 0 011112233344555556678899999999999999
Q ss_pred ccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCC
Q 002353 608 FDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVD 687 (932)
Q Consensus 608 ~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d 687 (932)
++.|+...|..|+.+|+.+.+ ...|.......+++||+|++..... ....-.+.+.|+.|+..+-+-
T Consensus 237 i~~l~~~~q~~L~~~l~~~~~--~~~g~~~~~~~~~rii~~~~~~l~~------~~~~~~f~~~l~~~l~~~~i~----- 303 (444)
T PRK15115 237 IGDMPAPLQVKLLRVLQERKV--RPLGSNRDIDIDVRIISATHRDLPK------AMARGEFREDLYYRLNVVSLK----- 303 (444)
T ss_pred cccCCHHHHHHHHHHHhhCCE--EeCCCCceeeeeEEEEEeCCCCHHH------HHHcCCccHHHHHhhceeeec-----
Confidence 999999999999999999875 4456666778899999999864211 111113445555555443221
Q ss_pred hhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhc--CCCcCChhHHHHHH
Q 002353 688 PVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLN--VFPRLHDPDMEKLT 765 (932)
Q Consensus 688 ~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~--~~P~Ls~ea~~~L~ 765 (932)
.|. ...+..+...|...+++++ ++.+ ..+.++++|.+.|.
T Consensus 304 ------------------lPp-----------------Lr~R~eDi~~l~~~~l~~~---~~~~~~~~~~~~~~a~~~L~ 345 (444)
T PRK15115 304 ------------------IPA-----------------LAERTEDIPLLANHLLRQA---AERHKPFVRAFSTDAMKRLM 345 (444)
T ss_pred ------------------CCC-----------------hHhccccHHHHHHHHHHHH---HHHhCCCCCCcCHHHHHHHH
Confidence 110 0111223333333444443 3322 13469999999999
Q ss_pred HHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHhhhhcc
Q 002353 766 HVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSFISTQKFGVQKALQRSFRKYMTF 845 (932)
Q Consensus 766 ~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~~~~~k~s~~~~l~~~f~~~~~~ 845 (932)
.| .||+|+|+|+++|+.+...+. ...|+.+|+...+.- . ... .
T Consensus 346 ~~------------~WpgNvreL~~~i~~~~~~~~---~~~i~~~~l~~~~~~-------~-~~~-~------------- 388 (444)
T PRK15115 346 TA------------SWPGNVRQLVNVIEQCVALTS---SPVISDALVEQALEG-------E-NTA-L------------- 388 (444)
T ss_pred hC------------CCCChHHHHHHHHHHHHHhCC---CCccChhhhhhhhcc-------c-ccc-c-------------
Confidence 98 999999999999998766544 567888887543210 0 000 0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHhcCccc
Q 002353 846 KKEYNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQELEIYD 901 (932)
Q Consensus 846 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~i~~ 901 (932)
......+..+++.+|.++|+..+.+.. .++..++|+..+|++|+++|||..
T Consensus 389 -~~~~~~~~~~E~~~i~~al~~~~gn~~----~aA~~Lgisr~tL~rkl~~~~~~~ 439 (444)
T PRK15115 389 -PTFVEARNQFELNYLRKLLQITKGNVT----HAARMAGRNRTEFYKLLSRHELDA 439 (444)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHHhCCCHHHHHHHHHHhCCCc
Confidence 011122356789999999998877665 778999999999999999999963
No 40
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.72 E-value=2.1e-17 Score=192.77 Aligned_cols=274 Identities=16% Similarity=0.206 Sum_probs=181.1
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCc---EEe--cCCCc-c-cccccceeecCcccchhhhccCceeccCCCeeeeccc
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRA---VYT--TGKGA-S-AVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEF 608 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~---v~~--~g~~s-s-~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~ 608 (932)
.+|+|+|++||||+.+|+++|..+++. ++. ++... . .....++..+..++|.....+|.+..|++|++||||+
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i 242 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEI 242 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEech
Confidence 499999999999999999999987653 221 11110 0 0111122333334444445678899999999999999
Q ss_pred cccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEE-ecCCCC
Q 002353 609 DKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCV-VKDVVD 687 (932)
Q Consensus 609 dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~-l~D~~d 687 (932)
+.|+...|..|+++++.+.+ .+.|.....+.+++||+|+|...... ...-.+.+.|+.|+..+-+ |....+
T Consensus 243 ~~l~~~~q~~l~~~l~~~~~--~~~~~~~~~~~~~rii~~~~~~l~~~------~~~~~~~~~L~~~l~~~~i~lPpLr~ 314 (445)
T TIGR02915 243 GDLPLNLQAKLLRFLQERVI--ERLGGREEIPVDVRIVCATNQDLKRM------IAEGTFREDLFYRIAEISITIPPLRS 314 (445)
T ss_pred hhCCHHHHHHHHHHHhhCeE--EeCCCCceeeeceEEEEecCCCHHHH------HHcCCccHHHHHHhccceecCCCchh
Confidence 99999999999999999874 44566667788999999999864211 1112345556666543222 111111
Q ss_pred hhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHH
Q 002353 688 PVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTH 766 (932)
Q Consensus 688 ~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~ 766 (932)
+..+...+...+|++|.. |.+ -.+.+++++...|..
T Consensus 315 -----------------------------------------R~~Di~~l~~~~l~~~~~~~~~--~~~~~~~~a~~~L~~ 351 (445)
T TIGR02915 315 -----------------------------------------RDGDAVLLANAFLERFARELKR--KTKGFTDDALRALEA 351 (445)
T ss_pred -----------------------------------------chhhHHHHHHHHHHHHHHHhCC--CCCCCCHHHHHHHHh
Confidence 122223334445555422 111 235799999999999
Q ss_pred HHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHhhhhcch
Q 002353 767 VYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSFISTQKFGVQKALQRSFRKYMTFK 846 (932)
Q Consensus 767 ~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~~~~~k~s~~~~l~~~f~~~~~~~ 846 (932)
| +||+|+|+|+++|+.+...|. ...++.+|+.. ... . ..+ .. ..
T Consensus 352 ~------------~wpgNvreL~~~i~~a~~~~~---~~~i~~~~l~~-----~~~---~-~~~---------~~-~~-- 395 (445)
T TIGR02915 352 H------------AWPGNVRELENKVKRAVIMAE---GNQITAEDLGL-----DAR---E-RAE---------TP-LE-- 395 (445)
T ss_pred C------------CCCChHHHHHHHHHHHHHhCC---CCcccHHHcCC-----ccc---c-ccc---------cc-cc--
Confidence 8 999999999999998776554 56788777641 000 0 000 00 00
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHhcCcc
Q 002353 847 KEYNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQELEIY 900 (932)
Q Consensus 847 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~i~ 900 (932)
....+.+..++++++.++|+..+.+.. .++..++|++.+|++|+++|||.
T Consensus 396 ~~l~~~~~~~E~~~i~~al~~~~gn~~----~aA~~Lgisr~tl~rkl~~~~i~ 445 (445)
T TIGR02915 396 VNLREVRERAEREAVRKAIARVDGNIA----RAAELLGITRPTLYDLMKKHGIK 445 (445)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHHhCCCHHHHHHHHHHhCCC
Confidence 012233456889999999998877665 77899999999999999999973
No 41
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.72 E-value=4.7e-17 Score=193.04 Aligned_cols=276 Identities=15% Similarity=0.179 Sum_probs=175.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc---EEe-cCCCccc----ccccceeecCcccchhhhccCceeccCCCeeeeccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA---VYT-TGKGASA----VGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEF 608 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~---v~~-~g~~ss~----~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~ 608 (932)
+|||+|++||||+.+|+++|..+.+. +.. .....+. ..|+ +......++......|.+..|++|++||||+
T Consensus 229 pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elF-G~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI 307 (520)
T PRK10820 229 PLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELF-GHAPGAYPNALEGKKGFFEQANGGSVLLDEI 307 (520)
T ss_pred CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhc-CCCCCCcCCcccCCCChhhhcCCCEEEEeCh
Confidence 89999999999999999999987754 111 1011100 0111 1111222232234567888999999999999
Q ss_pred cccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEE-EecCCCC
Q 002353 609 DKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLC-VVKDVVD 687 (932)
Q Consensus 609 dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~-~l~D~~d 687 (932)
+.|+...|..|+.+++.++ +.+.|.....+.+++||+||+...... ...-.+.+.|+.|+..+- .|....+
T Consensus 308 ~~L~~~~Q~~Ll~~l~~~~--~~~~g~~~~~~~~vRiI~st~~~l~~l------~~~g~f~~dL~~rL~~~~i~lPpLre 379 (520)
T PRK10820 308 GEMSPRMQAKLLRFLNDGT--FRRVGEDHEVHVDVRVICATQKNLVEL------VQKGEFREDLYYRLNVLTLNLPPLRD 379 (520)
T ss_pred hhCCHHHHHHHHHHHhcCC--cccCCCCcceeeeeEEEEecCCCHHHH------HHcCCccHHHHhhcCeeEEeCCCccc
Confidence 9999999999999999887 345666666778899999998754211 122245667787876433 3321111
Q ss_pred hhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHH
Q 002353 688 PVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHV 767 (932)
Q Consensus 688 ~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~ 767 (932)
.. .+...|...+|++|..- .....|.|++++.+.|..|
T Consensus 380 R~-----------------------------------------~Di~~L~~~fl~~~~~~-~g~~~~~ls~~a~~~L~~y 417 (520)
T PRK10820 380 RP-----------------------------------------QDIMPLTELFVARFADE-QGVPRPKLAADLNTVLTRY 417 (520)
T ss_pred Ch-----------------------------------------hHHHHHHHHHHHHHHHH-cCCCCCCcCHHHHHHHhcC
Confidence 11 12223334455554321 1112568999999999988
Q ss_pred HHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHhhhhcchh
Q 002353 768 YAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSFISTQKFGVQKALQRSFRKYMTFKK 847 (932)
Q Consensus 768 Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~~~~~k~s~~~~l~~~f~~~~~~~~ 847 (932)
.||+|+|+|++++..+...+. ...++.+|+... ....+...+ ...+ ..
T Consensus 418 ------------~WPGNvreL~nvl~~a~~~~~---~~~i~~~~~~l~------~~~~~~~~~---------~~~~--~~ 465 (520)
T PRK10820 418 ------------GWPGNVRQLKNAIYRALTQLE---GYELRPQDILLP------DYDAAVAVG---------EDAM--EG 465 (520)
T ss_pred ------------CCCCHHHHHHHHHHHHHHhCC---CCcccHHHcCCc------ccccccccc---------cccc--cC
Confidence 999999999999987766544 567888886310 000000000 0000 01
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHhcCcc
Q 002353 848 EYNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQELEIY 900 (932)
Q Consensus 848 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~i~ 900 (932)
...+.+..++++++.+++.... .. ..+++.++|+..+|++|+++|||.
T Consensus 466 ~L~~~~~~~E~~~i~~~l~~~~-~~----~~aA~~LGisr~tL~rkl~~~gi~ 513 (520)
T PRK10820 466 SLDEITSRFERSVLTRLYRNYP-ST----RKLAKRLGVSHTAIANKLREYGLS 513 (520)
T ss_pred CHHHHHHHHHHHHHHHHHHHCC-CH----HHHHHHhCCCHHHHHHHHHHcCCC
Confidence 2344556677888877766433 22 267889999999999999999995
No 42
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.72 E-value=2.8e-17 Score=192.35 Aligned_cols=283 Identities=17% Similarity=0.193 Sum_probs=183.7
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCc---EEecCCCcccc----cccceeecCcccchhhhccCceeccCCCeeeeccc
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRA---VYTTGKGASAV----GLTAAVHKDPVTREWTLEGGALVLADRGICLIDEF 608 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~---v~~~g~~ss~~----gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~ 608 (932)
.+||+.|++||||+.++++++..+++. ++......... ...++..+...+|......|.+..|++|++||||+
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i 246 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEI 246 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEech
Confidence 399999999999999999999987643 22211111101 11112223334455555678999999999999999
Q ss_pred cccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEE-ecCCCC
Q 002353 609 DKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCV-VKDVVD 687 (932)
Q Consensus 609 dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~-l~D~~d 687 (932)
+.|+...|..|+.+++.+.+ .+.|.....+.+++||+|+|...... ...-.+.+.|+.|+..+.+ +....+
T Consensus 247 ~~l~~~~q~~L~~~l~~~~~--~~~~~~~~~~~~~rii~~t~~~l~~~------~~~g~~~~~l~~~l~~~~i~~ppLre 318 (457)
T PRK11361 247 GEMPLVLQAKLLRILQEREF--ERIGGHQTIKVDIRIIAATNRDLQAM------VKEGTFREDLFYRLNVIHLILPPLRD 318 (457)
T ss_pred hhCCHHHHHHHHHHHhcCcE--EeCCCCceeeeceEEEEeCCCCHHHH------HHcCCchHHHHHHhccceecCCChhh
Confidence 99999999999999998874 45666677788999999999754211 1112344456666544322 111101
Q ss_pred hhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHH
Q 002353 688 PVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHV 767 (932)
Q Consensus 688 ~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~ 767 (932)
+..+...+...+|.+|-.-- ..-.+.++++|.+.|..|
T Consensus 319 -----------------------------------------R~~di~~l~~~~l~~~~~~~-~~~~~~~~~~a~~~L~~~ 356 (457)
T PRK11361 319 -----------------------------------------RREDISLLANHFLQKFSSEN-QRDIIDIDPMAMSLLTAW 356 (457)
T ss_pred -----------------------------------------chhhHHHHHHHHHHHHHHHc-CCCCCCcCHHHHHHHHcC
Confidence 11222233344555543210 112357999999999998
Q ss_pred HHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHhhhhcchh
Q 002353 768 YAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSFISTQKFGVQKALQRSFRKYMTFKK 847 (932)
Q Consensus 768 Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~~~~~k~s~~~~l~~~f~~~~~~~~ 847 (932)
.||+|+|+|+++|+.+...+. ...++.+|+...+.. .+ ...... ........
T Consensus 357 ------------~wpgNv~eL~~~~~~~~~~~~---~~~i~~~~l~~~~~~--~~-----~~~~~~------~~~~~~~~ 408 (457)
T PRK11361 357 ------------SWPGNIRELSNVIERAVVMNS---GPIIFSEDLPPQIRQ--PV-----CNAGEV------KTAPVGER 408 (457)
T ss_pred ------------CCCCcHHHHHHHHHHHHHhCC---CCcccHHHChHhhhc--cc-----cccccc------cccccccc
Confidence 999999999999998766554 557888888654321 00 000000 00000001
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHhcCcc
Q 002353 848 EYNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQELEIY 900 (932)
Q Consensus 848 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~i~ 900 (932)
...+.+..+++.+|..+|+..+.++. .++..++|+..+|++|+++|||.
T Consensus 409 ~l~~~~~~~E~~~i~~al~~~~gn~~----~aA~~LGisr~tL~rkl~~~~i~ 457 (457)
T PRK11361 409 NLKEEIKRVEKRIIMEVLEQQEGNRT----RTALMLGISRRALMYKLQEYGID 457 (457)
T ss_pred chhhHHHHHHHHHHHHHHHHhCCCHH----HHHHHHCCCHHHHHHHHHHhCCC
Confidence 12344677899999999998777665 67899999999999999999974
No 43
>PF14551 MCM_N: MCM N-terminal domain; PDB: 2VL6_C 3F9V_A 1LTL_E.
Probab=99.72 E-value=5.9e-18 Score=162.12 Aligned_cols=113 Identities=29% Similarity=0.531 Sum_probs=91.9
Q ss_pred HHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHcCCcEEEEehhhHhccCHHHHHHHHHCHHHHHHHHHHHHHHHHHhh-
Q 002353 211 IAKKFKEFLLTYVSPKSEQGDFEYVRLINEIVSANKCSLEIDYKQFIYIHPNIAIWLADAPQSVLEVMEDVARNVVFNL- 289 (932)
Q Consensus 211 i~~~F~~FL~~f~~~~d~~g~~~Y~~~I~~m~~~~~~sl~Vd~~dL~~~~p~La~~L~~~P~~~L~if~~a~~evv~~~- 289 (932)
|+++|++||.+|. . ..+|+++|++|+..++.+|.||+.||.+|++.||.+|.++|.+++++|++|+++++..+
T Consensus 1 i~~~F~~Fl~~f~---~---~~~Y~~~l~~~~~~~~~~l~Vd~~dL~~f~~~L~~~l~~~P~~~l~~~~~a~~~~~~~~~ 74 (121)
T PF14551_consen 1 IKRRFREFLREFK---E---EPKYMDQLREMIQRNKKSLYVDLDDLREFDPDLAEALIENPYRYLPLFEEALKEVVKELF 74 (121)
T ss_dssp --HHHHHHCCCH----T---S-CCHHHHHHHHHHT-SCEEEEHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHCHHTT-
T ss_pred ChHHHHHHHHcCC---C---chHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6789999999995 2 57899999999999999999999999999999999999999999999999999999864
Q ss_pred -------CCCcccccceEEEEEccCCcccccccccccCCCcEEEEEE
Q 002353 290 -------HPNYKRIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGG 329 (932)
Q Consensus 290 -------~p~~~~i~~~I~Vri~nlp~~~~iR~Lrs~~igkLV~V~G 329 (932)
+|........++|++.|+|...++|+|++.++|+||+|+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iR~L~s~~igkLV~v~G 121 (121)
T PF14551_consen 75 PSEQQSSFPPELKRRKEIQVRFYNLPKSTSIRELRSSHIGKLVSVSG 121 (121)
T ss_dssp ---------GCCTTTS--EEEEES-S-EE-GGG-SGGGTTSEEEEEE
T ss_pred hhhcccCCchhhccceeEEEEEcCCCCCcCcCCCChHHCCCEEEEeC
Confidence 3443334578999999999999999999999999999999
No 44
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.71 E-value=3.2e-16 Score=186.12 Aligned_cols=223 Identities=19% Similarity=0.269 Sum_probs=151.9
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCc----------EEe-cCCCc-
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRA----------VYT-TGKGA- 570 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~----------v~~-~g~~s- 570 (932)
.++|++...+++..++++.. +.||||+||||||||++|+++++.+.+. ++. .....
T Consensus 66 ~iiGqs~~i~~l~~al~~~~------------~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~ 133 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPN------------PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTAR 133 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCC------------CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccccc
Confidence 58999998888887776642 1299999999999999999998754221 111 10000
Q ss_pred -c----cccccceeecCc---------ccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccc--
Q 002353 571 -S----AVGLTAAVHKDP---------VTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAG-- 634 (932)
Q Consensus 571 -s----~~gLta~v~kd~---------~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kag-- 634 (932)
. ...+..++ .++ .+|....++|++..|++|||||||++.|++..|..|+.+||++.+.+..+.
T Consensus 134 ~~~~~~~~~li~~~-~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~ 212 (531)
T TIGR02902 134 FDERGIADPLIGSV-HDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYN 212 (531)
T ss_pred CCccccchhhcCCc-ccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeecccccc
Confidence 0 00111111 111 112223467888999999999999999999999999999999887653210
Q ss_pred -------------eeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhh
Q 002353 635 -------------IVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDS 701 (932)
Q Consensus 635 -------------i~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~ 701 (932)
....+++++++|+|||.... .+++++.+||..+++ ...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~------------~L~paLrsR~~~I~f-~pL---------------- 263 (531)
T TIGR02902 213 SENPNIPSHIHDIFQNGLPADFRLIGATTRNPE------------EIPPALRSRCVEIFF-RPL---------------- 263 (531)
T ss_pred ccCcccccchhhhcccCcccceEEEEEecCCcc------------cCChHHhhhhheeeC-CCC----------------
Confidence 02346788999988876431 588999999865543 111
Q ss_pred ccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCC
Q 002353 702 HFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQG 780 (932)
Q Consensus 702 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~ 780 (932)
+.+.+...+. .++ .....+++++.+.|..| .
T Consensus 264 -----------------------------------~~eei~~Il~~~a~-k~~i~is~~al~~I~~y------------~ 295 (531)
T TIGR02902 264 -----------------------------------LDEEIKEIAKNAAE-KIGINLEKHALELIVKY------------A 295 (531)
T ss_pred -----------------------------------CHHHHHHHHHHHHH-HcCCCcCHHHHHHHHHh------------h
Confidence 1122222222 222 23467889998888765 3
Q ss_pred cccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Q 002353 781 VPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIR 817 (932)
Q Consensus 781 ~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~ 817 (932)
| +.|++.++++.|...|..+.+..|+.+|+..++.
T Consensus 296 ~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 296 S--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred h--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 3 6799999999999888888888999999999864
No 45
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.67 E-value=2e-15 Score=164.41 Aligned_cols=209 Identities=17% Similarity=0.229 Sum_probs=135.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe-cCCC-cccccccceee----------------cCcccchhhhccCceec-
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT-TGKG-ASAVGLTAAVH----------------KDPVTREWTLEGGALVL- 597 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~-~g~~-ss~~gLta~v~----------------kd~~~g~~~le~Gal~l- 597 (932)
||||.|+||||||++|+++++.....+.. ++.. .....+.+... +...........|.+..
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A 102 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLA 102 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHH
Confidence 99999999999999999999977666543 2221 11122222111 00000111234677765
Q ss_pred -cCCCeeeeccccccCcchhhhHHHHHhhceeeeecc---ceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhh
Q 002353 598 -ADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKA---GIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPII 673 (932)
Q Consensus 598 -Ad~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~ka---gi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LL 673 (932)
+.+++|+||||++++++.+..|+++|+++.+++... +.....+..++||||+||.. |. ..-.++++|+
T Consensus 103 ~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~--~~------g~~~l~~aL~ 174 (262)
T TIGR02640 103 VREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVE--YA------GVHETQDALL 174 (262)
T ss_pred HHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcc--cc------ceecccHHHH
Confidence 478999999999999999999999999998877432 23445677899999999853 11 1115689999
Q ss_pred ccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCC
Q 002353 674 SRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVF 753 (932)
Q Consensus 674 sRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~ 753 (932)
+||-.+.+ +.|+.+....|.. .|
T Consensus 175 ~R~~~i~i--~~P~~~~e~~Il~----~~--------------------------------------------------- 197 (262)
T TIGR02640 175 DRLITIFM--DYPDIDTETAILR----AK--------------------------------------------------- 197 (262)
T ss_pred hhcEEEEC--CCCCHHHHHHHHH----Hh---------------------------------------------------
Confidence 99843332 6665544433321 11
Q ss_pred CcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 002353 754 PRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAI 816 (932)
Q Consensus 754 P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI 816 (932)
..++++..+.+.+.+..+|.... ....++|.+-.+.|. .+.+.++..|+.+|+....
T Consensus 198 ~~~~~~~~~~iv~~~~~~R~~~~---~~~~~~r~~i~~~~~---~~~~~~~~~~~~~~~~~~~ 254 (262)
T TIGR02640 198 TDVAEDSAATIVRLVREFRASGD---EITSGLRASLMIAEV---ATQQDIPVDVDDEDFVDLC 254 (262)
T ss_pred hCCCHHHHHHHHHHHHHHHhhCC---ccCCcHHHHHHHHHH---HHHcCCCCCCCcHHHHHHH
Confidence 02345567777788888883221 234457776555554 4555779999999997653
No 46
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.66 E-value=1.5e-16 Score=195.18 Aligned_cols=275 Identities=17% Similarity=0.189 Sum_probs=173.1
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCc---EEe--cCCCcc--cccccceeecCcccchhhhccCceeccCCCeeeeccc
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRA---VYT--TGKGAS--AVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEF 608 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~---v~~--~g~~ss--~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~ 608 (932)
.||||+|+|||||+.+|+++|..+.+. +.. +..... .....++..+...+|......|.+..|++|++|||||
T Consensus 400 ~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei 479 (686)
T PRK15429 400 STVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEV 479 (686)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccchhhHHHhcCCCeEEEech
Confidence 399999999999999999999988753 111 111100 0011112222233343334467788999999999999
Q ss_pred cccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEE-ecCCCC
Q 002353 609 DKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCV-VKDVVD 687 (932)
Q Consensus 609 dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~-l~D~~d 687 (932)
+.|+...|..|+.+++.+.+ .+.|.....+.+++|||++|...... ...-.+...|+.|+..+-+ |....+
T Consensus 480 ~~L~~~~Q~~L~~~l~~~~~--~~~g~~~~~~~~~RiI~~t~~~l~~~------~~~~~f~~~L~~~l~~~~i~lPpLre 551 (686)
T PRK15429 480 GDMPLELQPKLLRVLQEQEF--ERLGSNKIIQTDVRLIAATNRDLKKM------VADREFRSDLYYRLNVFPIHLPPLRE 551 (686)
T ss_pred hhCCHHHHHHHHHHHHhCCE--EeCCCCCcccceEEEEEeCCCCHHHH------HHcCcccHHHHhccCeeEEeCCChhh
Confidence 99999999999999998864 45666666778899999999854211 1222455666667655433 211111
Q ss_pred hhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcC--CCcCChhHHHHHH
Q 002353 688 PVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNV--FPRLHDPDMEKLT 765 (932)
Q Consensus 688 ~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~--~P~Ls~ea~~~L~ 765 (932)
+..|.+.|...++.+| ++++- .+.++++|.+.|.
T Consensus 552 -----------------------------------------R~~Di~~L~~~~l~~~---~~~~~~~~~~~s~~al~~L~ 587 (686)
T PRK15429 552 -----------------------------------------RPEDIPLLVKAFTFKI---ARRMGRNIDSIPAETLRTLS 587 (686)
T ss_pred -----------------------------------------hHhHHHHHHHHHHHHH---HHHcCCCCCCcCHHHHHHHH
Confidence 1122222333444443 33221 2469999999999
Q ss_pred HHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHhhhhcc
Q 002353 766 HVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSFISTQKFGVQKALQRSFRKYMTF 845 (932)
Q Consensus 766 ~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~~~~~k~s~~~~l~~~f~~~~~~ 845 (932)
.| .||+|+|+|+++|+.+...+. ...++.+ +.... . ....+ .. ...
T Consensus 588 ~y------------~WPGNvrEL~~~i~~a~~~~~---~~~i~~~-l~~~~--~----~~~~~----~~--------~~~ 633 (686)
T PRK15429 588 NM------------EWPGNVRELENVIERAVLLTR---GNVLQLS-LPDIT--L----PEPET----PP--------AAT 633 (686)
T ss_pred hC------------CCCCcHHHHHHHHHHHHHhCC---CCccccc-Cchhh--c----ccccc----cc--------ccc
Confidence 98 999999999999998776554 3344432 21110 0 00000 00 000
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHhcCcc
Q 002353 846 KKEYNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQELEIY 900 (932)
Q Consensus 846 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~i~ 900 (932)
. ......+.|++|.++|+..+.+..+ ...++..++|++.+|++|+++|||.
T Consensus 634 --~-~~~~~~~Er~~I~~aL~~~~gn~~~-~~~aA~~LGi~R~tL~rklk~~gi~ 684 (686)
T PRK15429 634 --V-VAQEGEDEYQLIVRVLKETNGVVAG-PKGAAQRLGLKRTTLLSRMKRLGID 684 (686)
T ss_pred --c-cccHHHHHHHHHHHHHHHcCCCccc-HHHHHHHhCCCHHHHHHHHHHcCCC
Confidence 0 0112457889999999987765420 1267789999999999999999984
No 47
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.65 E-value=4.8e-16 Score=182.27 Aligned_cols=292 Identities=17% Similarity=0.177 Sum_probs=183.1
Q ss_pred CceEEEeCCCCchHHHHHHHHHHhCCCc---EEe--cCCCcc--cccccceeecCcccchhhhccCceeccCCCeeeecc
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKTGQRA---VYT--TGKGAS--AVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDE 607 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~~~r~---v~~--~g~~ss--~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE 607 (932)
++++++.|++||||+.++++++..+++. ++. ++.... .....++..+..++|...-..|.+..|++|++||||
T Consensus 157 ~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~e 236 (463)
T TIGR01818 157 DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDE 236 (463)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEc
Confidence 4599999999999999999999987753 222 111100 011112223333444444457889999999999999
Q ss_pred ccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccE-EEEecCCC
Q 002353 608 FDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDV-LCVVKDVV 686 (932)
Q Consensus 608 ~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDl-i~~l~D~~ 686 (932)
++.|+...|..|+++++.+.+. +.|.....+.+++||+|+|...... ...-.+.+.|+.|+.. .+.|....
T Consensus 237 i~~l~~~~q~~ll~~l~~~~~~--~~~~~~~~~~~~rii~~~~~~l~~~------~~~~~f~~~L~~rl~~~~i~lPpLr 308 (463)
T TIGR01818 237 IGDMPLDAQTRLLRVLADGEFY--RVGGRTPIKVDVRIVAATHQNLEAL------VRQGKFREDLFHRLNVIRIHLPPLR 308 (463)
T ss_pred hhhCCHHHHHHHHHHHhcCcEE--ECCCCceeeeeeEEEEeCCCCHHHH------HHcCCcHHHHHHHhCcceecCCCcc
Confidence 9999999999999999988754 4566666778899999999854211 1112445567777654 22321111
Q ss_pred ChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhc--CCCcCChhHHHHH
Q 002353 687 DPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLN--VFPRLHDPDMEKL 764 (932)
Q Consensus 687 d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~--~~P~Ls~ea~~~L 764 (932)
+.. .+...+...+|+++ ++.. -.+.++++|...|
T Consensus 309 ~R~-----------------------------------------~Di~~l~~~~l~~~---~~~~~~~~~~~~~~a~~~L 344 (463)
T TIGR01818 309 ERR-----------------------------------------EDIPRLARHFLALA---ARELDVEPKLLDPEALERL 344 (463)
T ss_pred cch-----------------------------------------hhHHHHHHHHHHHH---HHHhCCCCCCcCHHHHHHH
Confidence 111 12222223333333 2221 1257999999999
Q ss_pred HHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH-hhhhhhhh--hchHHHHHHHHhh
Q 002353 765 THVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLL-DSFISTQK--FGVQKALQRSFRK 841 (932)
Q Consensus 765 ~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~-~S~~~~~k--~s~~~~l~~~f~~ 841 (932)
..| +||+|+|+|+++++.+...|. ...++.+|+...+..-. .+.....+ .+....+..-...
T Consensus 345 ~~~------------~wpgNvreL~~~~~~~~~~~~---~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (463)
T TIGR01818 345 KQL------------RWPGNVRQLENLCRWLTVMAS---GDEVLVSDLPAELALTGRPASAPDSDGQDSWDEALEAWAKQ 409 (463)
T ss_pred HhC------------CCCChHHHHHHHHHHHHHhCC---CCcccHHhchHHHhccccccccccccccccccccccccccc
Confidence 998 999999999999998776664 66899999875543200 00000000 0000000000000
Q ss_pred hhcc--hhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHhc
Q 002353 842 YMTF--KKEYNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQEL 897 (932)
Q Consensus 842 ~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~ 897 (932)
.+.. .......+..+.+.+|.++|+..+.+.. .++..++|+..+|++|++++
T Consensus 410 ~~~~~~~~~~~~~l~~~E~~~i~~al~~~~gn~~----~aA~~Lgisr~tL~rkl~~~ 463 (463)
T TIGR01818 410 ALSRGEQGLLDRALPEFERPLLEAALQHTRGHKQ----EAAALLGWGRNTLTRKLKEL 463 (463)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHcCCCHH----HHHHHhCCCHHHHHHHHHhC
Confidence 0110 1122345677899999999998877665 77889999999999999874
No 48
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.65 E-value=1e-15 Score=159.58 Aligned_cols=200 Identities=19% Similarity=0.289 Sum_probs=123.2
Q ss_pred cccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEec-CCCccccccccee
Q 002353 501 APSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTT-GKGASAVGLTAAV 579 (932)
Q Consensus 501 ap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~-g~~ss~~gLta~v 579 (932)
.-.+.||+.++..+-..+-....+.. .=-|+||+||||+|||+||+.+|+.....+..+ |......+-.++
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~-------~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~- 94 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGE-------ALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAA- 94 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS----------EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHH-
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCC-------CcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHH-
Confidence 44578999998875544332110000 001999999999999999999999987766542 111011110000
Q ss_pred ecCcccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeee-ccc---eeEeec-cceEEEeeeCCCCC
Q 002353 580 HKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISIS-KAG---IVTSLQ-ARCSVIAAANPVGG 654 (932)
Q Consensus 580 ~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~-kag---i~~~l~-ar~sIIAAaNp~~G 654 (932)
+ ...+..+-|+|||||++|++..+..|+.+||++.+.+- .+| ....++ .++++|+||+..+
T Consensus 95 ----------i---l~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g- 160 (233)
T PF05496_consen 95 ----------I---LTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAG- 160 (233)
T ss_dssp ----------H---HHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGC-
T ss_pred ----------H---HHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecccc-
Confidence 0 00123567999999999999999999999999998652 333 122333 5699999999865
Q ss_pred ccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCC
Q 002353 655 RYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPE 734 (932)
Q Consensus 655 ry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (932)
.|+.||.+||-+++.+ +
T Consensus 161 ------------~ls~pLrdRFgi~~~l-~-------------------------------------------------- 177 (233)
T PF05496_consen 161 ------------LLSSPLRDRFGIVLRL-E-------------------------------------------------- 177 (233)
T ss_dssp ------------CTSHCCCTTSSEEEE-----------------------------------------------------
T ss_pred ------------ccchhHHhhcceecch-h--------------------------------------------------
Confidence 7999999999999886 1
Q ss_pred CCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHH
Q 002353 735 ILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAH 798 (932)
Q Consensus 735 ~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~ 798 (932)
.++.+.|.+.+..+.....-.++++++..|.+. ..+|+|-...|+|....+
T Consensus 178 ~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~r-------------srGtPRiAnrll~rvrD~ 228 (233)
T PF05496_consen 178 FYSEEELAKIVKRSARILNIEIDEDAAEEIARR-------------SRGTPRIANRLLRRVRDF 228 (233)
T ss_dssp --THHHHHHHHHHCCHCTT-EE-HHHHHHHHHC-------------TTTSHHHHHHHHHHHCCC
T ss_pred cCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHh-------------cCCChHHHHHHHHHHHHH
Confidence 124455666666444456667888888888763 357899888888865433
No 49
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.65 E-value=2.9e-16 Score=150.20 Aligned_cols=128 Identities=26% Similarity=0.350 Sum_probs=88.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEec-C-CCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTT-G-KGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQ 614 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~-g-~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~ 614 (932)
||||.|.||+|||++++++++.....+.-. + .......+++....+..++.|.+.+|.+.. +|+++|||+..++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~---~ill~DEiNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFT---NILLADEINRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-S---SEEEEETGGGS-HH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhh---ceeeecccccCCHH
Confidence 899999999999999999999987654321 1 112344556666666666888888888874 79999999999999
Q ss_pred hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhcccc
Q 002353 615 DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFD 677 (932)
Q Consensus 615 ~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFD 677 (932)
.|.+|+++|+++.+++ .|....++..+.||||.||.. ...++ .|++++++||-
T Consensus 78 tQsAlLeam~Er~Vt~--~g~~~~lp~pf~ViATqNp~e----~~Gty----~Lpea~~DRF~ 130 (131)
T PF07726_consen 78 TQSALLEAMEERQVTI--DGQTYPLPDPFFVIATQNPVE----QEGTY----PLPEAQLDRFM 130 (131)
T ss_dssp HHHHHHHHHHHSEEEE--TTEEEE--SS-EEEEEE-TT------S----------HHHHTTSS
T ss_pred HHHHHHHHHHcCeEEe--CCEEEECCCcEEEEEecCccc----cCcee----cCCHHHhcccc
Confidence 9999999999999888 889999999999999999964 12233 89999999995
No 50
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.62 E-value=2e-16 Score=183.51 Aligned_cols=264 Identities=18% Similarity=0.179 Sum_probs=168.9
Q ss_pred ccCCceEEEeCCCCchHHHHHHHHHHhCCCc---EE-ecCCC---cccccccceeecCcccchhhh-ccCceeccCCCee
Q 002353 532 LRGDINVLLLGDPGTAKSQFLKYVEKTGQRA---VY-TTGKG---ASAVGLTAAVHKDPVTREWTL-EGGALVLADRGIC 603 (932)
Q Consensus 532 ~RgdinvLLvGdPGTGKS~Lak~va~~~~r~---v~-~~g~~---ss~~gLta~v~kd~~~g~~~l-e~Gal~lAd~GIl 603 (932)
.+.+++|||.|+|||||..|++++|+.+... +. .++-- .....|++ .....+||.+.. ..|.+.+|++|++
T Consensus 333 ~~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFG-y~~GafTga~~kG~~g~~~~A~gGtl 411 (606)
T COG3284 333 AATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFG-YVAGAFTGARRKGYKGKLEQADGGTL 411 (606)
T ss_pred hhcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhc-cCccccccchhccccccceecCCCcc
Confidence 4567899999999999999999999987632 10 01110 01112222 223344554333 3688999999999
Q ss_pred eeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEec
Q 002353 604 LIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVK 683 (932)
Q Consensus 604 ~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~ 683 (932)
|+|||..|+-..|+.|+.+++++.| ..-|... .+.+++||+||+........+. .+ |-||+|.+.
T Consensus 412 FldeIgd~p~~~Qs~LLrVl~e~~v--~p~g~~~-~~vdirvi~ath~dl~~lv~~g------~f------redLyyrL~ 476 (606)
T COG3284 412 FLDEIGDMPLALQSRLLRVLQEGVV--TPLGGTR-IKVDIRVIAATHRDLAQLVEQG------RF------REDLYYRLN 476 (606)
T ss_pred HHHHhhhchHHHHHHHHHHHhhCce--eccCCcc-eeEEEEEEeccCcCHHHHHHcC------Cc------hHHHHHHhc
Confidence 9999999999999999999999995 4577777 8999999999998752222222 22 444444431
Q ss_pred CCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHH
Q 002353 684 DVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDME 762 (932)
Q Consensus 684 D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~ 762 (932)
..+ -..|. . ..+.. ...+|..|.. +.. -.-.|++++..
T Consensus 477 ~~~-----------------i~lP~---l--------------r~R~d-----~~~~l~~~~~~~~~--~~~~l~~~~~~ 515 (606)
T COG3284 477 AFV-----------------ITLPP---L--------------RERSD-----RIPLLDRILKREND--WRLQLDDDALA 515 (606)
T ss_pred Cee-----------------eccCc---h--------------hcccc-----cHHHHHHHHHHccC--CCccCCHHHHH
Confidence 110 01111 0 00001 1123333332 222 12379999999
Q ss_pred HHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHhhh
Q 002353 763 KLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSFISTQKFGVQKALQRSFRKY 842 (932)
Q Consensus 763 ~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~~~~~k~s~~~~l~~~f~~~ 842 (932)
.|..| .||+|+|+|-++|+-+.+.+. ...|...|....+. .+. +
T Consensus 516 ~l~~~------------~WPGNirel~~v~~~~~~l~~---~g~~~~~dlp~~l~--~~~-----~-------------- 559 (606)
T COG3284 516 RLLAY------------RWPGNIRELDNVIERLAALSD---GGRIRVSDLPPELL--EEQ-----A-------------- 559 (606)
T ss_pred HHHhC------------CCCCcHHHHHHHHHHHHHcCC---CCeeEcccCCHHHH--hhh-----c--------------
Confidence 99988 999999999999998776654 55566666654321 111 0
Q ss_pred hcchhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHhcCcc
Q 002353 843 MTFKKEYNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQELEIY 900 (932)
Q Consensus 843 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~i~ 900 (932)
+. +..+++..+..+++-++++-. +++..++|+..+|++++|++||.
T Consensus 560 -~~-------~~~~~~~~l~~al~~~~~~is----~aa~~lgi~R~T~yrklk~~gi~ 605 (606)
T COG3284 560 -TP-------REDIEKAALLAALQATNGNIS----EAARLLGISRSTLYRKLKRHGIS 605 (606)
T ss_pred -cc-------ccchHHHHHHHHHHHcCCCHH----HHHHHhCCCHHHHHHHHHHhCCC
Confidence 00 223445555556665554333 66788999999999999999984
No 51
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.62 E-value=4.4e-14 Score=156.08 Aligned_cols=157 Identities=15% Similarity=0.203 Sum_probs=111.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEec--CCCcccccccceeecC--cccchhhhccCceecc--CCCeeeeccccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTT--GKGASAVGLTAAVHKD--PVTREWTLEGGALVLA--DRGICLIDEFDK 610 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~--g~~ss~~gLta~v~kd--~~~g~~~le~Gal~lA--d~GIl~IDE~dk 610 (932)
||||.|+||||||++++.+++.+...++.. ....+...+++..... ...+.+....|.+..| .+++|++||||.
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~ 145 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYDA 145 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechhhc
Confidence 899999999999999999999988776542 1222333344432111 1112234577887665 567899999999
Q ss_pred cCcchhhhHHHHHh-hceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChh
Q 002353 611 MNDQDRVSIHEAME-QQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPV 689 (932)
Q Consensus 611 m~~~~~~~L~eamE-qq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~ 689 (932)
.+++.+..|+.+|| .+.+++...+....-...+++|||+||.+ .-+....+.....+++++++||-+++.+ +.++++
T Consensus 146 a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g-~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~-~Yp~~e 223 (327)
T TIGR01650 146 GRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIG-LGDTTGLYHGTQQINQAQMDRWSIVTTL-NYLEHD 223 (327)
T ss_pred cCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCC-cCCCCcceeeeecCCHHHHhheeeEeeC-CCCCHH
Confidence 99999999999999 46888866565555566799999999975 1122223344448999999999887766 778777
Q ss_pred HhHHHH
Q 002353 690 VDEMLA 695 (932)
Q Consensus 690 ~D~~La 695 (932)
....|.
T Consensus 224 ~E~~Il 229 (327)
T TIGR01650 224 NEAAIV 229 (327)
T ss_pred HHHHHH
Confidence 666553
No 52
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.62 E-value=1.3e-14 Score=173.94 Aligned_cols=169 Identities=17% Similarity=0.247 Sum_probs=125.6
Q ss_pred hhhh-ccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeecc----ce----eEeeccceEEEeeeCCCCCccC
Q 002353 587 EWTL-EGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKA----GI----VTSLQARCSVIAAANPVGGRYD 657 (932)
Q Consensus 587 ~~~l-e~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~ka----gi----~~~l~ar~sIIAAaNp~~Gry~ 657 (932)
.+.. ++|++..|++|+|||||++.|++..|..|+++|+++.+.+... +. ....+++++||+++|+..
T Consensus 213 ~~~~i~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~l---- 288 (637)
T PRK13765 213 AHDRVEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDA---- 288 (637)
T ss_pred ccccCCCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCH----
Confidence 3444 8999999999999999999999999999999999999876321 11 345678899999999842
Q ss_pred CCCCcccccCCChhhhccccE---EEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCC
Q 002353 658 SSKTFSENVELTDPIISRFDV---LCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPE 734 (932)
Q Consensus 658 ~~~~~~~ni~L~~~LLsRFDl---i~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (932)
...+.+.|++||.. -+.+.+..
T Consensus 289 -------l~~~dpdL~~rfk~~~v~v~f~~~~------------------------------------------------ 313 (637)
T PRK13765 289 -------LENMHPALRSRIKGYGYEVYMRDTM------------------------------------------------ 313 (637)
T ss_pred -------HHhhhHHHHHHhccCeEEEEccccc------------------------------------------------
Confidence 11457888888862 22221100
Q ss_pred CCCHHHHHHHHHHHhhc-----CCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCH
Q 002353 735 ILPQDLLKKYITYAKLN-----VFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQ 809 (932)
Q Consensus 735 ~i~~~~LrkyI~yar~~-----~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~ 809 (932)
.-+.+..++|+.+..+. ..|.++.+|...|.++|..+ ....+..+...|+|..|+|.|...|+...++.|+.
T Consensus 314 ~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~---ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~ 390 (637)
T PRK13765 314 EDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRR---AGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTA 390 (637)
T ss_pred CCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHH---hCCccccccCHHHHHHHHHHHHHHHHhhccceecH
Confidence 01345566666643322 35789999999999998732 32333566779999999999999999999999999
Q ss_pred HHHHHHHH
Q 002353 810 EDVNMAIR 817 (932)
Q Consensus 810 ~Dv~~AI~ 817 (932)
+||..|+.
T Consensus 391 ~~v~~a~~ 398 (637)
T PRK13765 391 EHVLEAKK 398 (637)
T ss_pred HHHHHHHH
Confidence 99998874
No 53
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.57 E-value=4.1e-15 Score=173.27 Aligned_cols=269 Identities=18% Similarity=0.260 Sum_probs=174.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc---EEecCCCccccc----ccceeecCcccchhhhccCceeccCCCeeeecccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA---VYTTGKGASAVG----LTAAVHKDPVTREWTLEGGALVLADRGICLIDEFD 609 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~---v~~~g~~ss~~g----Lta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~d 609 (932)
++++.|++||||+.++++++..+++. ++.......... ..++..+...+|......|.+..|++|++||||++
T Consensus 164 ~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~ 243 (441)
T PRK10365 164 TVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 (441)
T ss_pred eEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccc
Confidence 89999999999999999999987753 222111111001 11122222233333345788999999999999999
Q ss_pred ccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChh
Q 002353 610 KMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPV 689 (932)
Q Consensus 610 km~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~ 689 (932)
.|+...|..|+.+++.+.+ .+.|.....+.++++|+||+...... ...-.+...|+.|+..+-+-
T Consensus 244 ~l~~~~q~~l~~~l~~~~~--~~~~~~~~~~~~~rii~~t~~~~~~~------~~~~~~~~~l~~~l~~~~i~------- 308 (441)
T PRK10365 244 DISPMMQVRLLRAIQEREV--QRVGSNQTISVDVRLIAATHRDLAAE------VNAGRFRQDLYYRLNVVAIE------- 308 (441)
T ss_pred cCCHHHHHHHHHHHccCcE--EeCCCCceeeeceEEEEeCCCCHHHH------HHcCCchHHHHHHhccceec-------
Confidence 9999999999999999884 44666667788899999998754211 11113444455555432221
Q ss_pred HhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhc--CCCcCChhHHHHHHHH
Q 002353 690 VDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLN--VFPRLHDPDMEKLTHV 767 (932)
Q Consensus 690 ~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~--~~P~Ls~ea~~~L~~~ 767 (932)
.|+ ...+..+...+...+|.+| ++.. -.+.++++|...|..|
T Consensus 309 ----------------~pp-----------------LreR~~Di~~l~~~~l~~~---~~~~~~~~~~~~~~a~~~L~~~ 352 (441)
T PRK10365 309 ----------------VPS-----------------LRQRREDIPLLAGHFLQRF---AERNRKAVKGFTPQAMDLLIHY 352 (441)
T ss_pred ----------------CCC-----------------hhhcchhHHHHHHHHHHHH---HHHhCCCCCCcCHHHHHHHHhC
Confidence 110 0011223333444455544 3322 2356999999999988
Q ss_pred HHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHhhhhcchh
Q 002353 768 YAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSFISTQKFGVQKALQRSFRKYMTFKK 847 (932)
Q Consensus 768 Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~~~~~k~s~~~~l~~~f~~~~~~~~ 847 (932)
.||+|+|+|+++++.+...+. ...++.+|+...+.. . ..+ ... ..
T Consensus 353 ------------~wpgN~reL~~~~~~~~~~~~---~~~i~~~~l~~~~~~---~---~~~-------------~~~-~~ 397 (441)
T PRK10365 353 ------------DWPGNIRELENAVERAVVLLT---GEYISERELPLAIAS---T---PIP-------------LGQ-SQ 397 (441)
T ss_pred ------------CCCCHHHHHHHHHHHHHHhCC---CCccchHhCchhhcc---c---ccC-------------ccc-cc
Confidence 999999999999998765543 567888887654310 0 000 000 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHh
Q 002353 848 EYNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQE 896 (932)
Q Consensus 848 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~ 896 (932)
.. ..|..+.+.+|.++|...+.+.. .++..++|++.+|++|+++
T Consensus 398 ~~-~~l~~~e~~~i~~~l~~~~gn~~----~aa~~Lgisr~tl~rk~~~ 441 (441)
T PRK10365 398 DI-QPLVEVEKEVILAALEKTGGNKT----EAARQLGITRKTLLAKLSR 441 (441)
T ss_pred ch-hhHHHHHHHHHHHHHHHhCCCHH----HHHHHhCCCHHHHHHHhhC
Confidence 11 12567889999999998777655 6788999999999999874
No 54
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.55 E-value=1.8e-13 Score=145.20 Aligned_cols=218 Identities=19% Similarity=0.279 Sum_probs=155.9
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEec-CCCcccccccceeec
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTT-GKGASAVGLTAAVHK 581 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~-g~~ss~~gLta~v~k 581 (932)
...|++.+|..+-+.+-+...++-.- . ||||+||||+|||+||..+|+.....+.++ |......|-.+++.
T Consensus 27 efiGQ~~vk~~L~ifI~AAk~r~e~l-D------HvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiL- 98 (332)
T COG2255 27 EFIGQEKVKEQLQIFIKAAKKRGEAL-D------HVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAIL- 98 (332)
T ss_pred HhcChHHHHHHHHHHHHHHHhcCCCc-C------eEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHH-
Confidence 34699999999888876542221111 1 999999999999999999999887665443 11111111111110
Q ss_pred CcccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeee--ccc--eeEee-ccceEEEeeeCCCCCcc
Q 002353 582 DPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISIS--KAG--IVTSL-QARCSVIAAANPVGGRY 656 (932)
Q Consensus 582 d~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~--kag--i~~~l-~ar~sIIAAaNp~~Gry 656 (932)
-.+..+-|+|||||..+++..-..|+.|||+-.+-|- +.- ....+ -+.+.+|+||...+
T Consensus 99 -------------t~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G--- 162 (332)
T COG2255 99 -------------TNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAG--- 162 (332)
T ss_pred -------------hcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccc---
Confidence 0133457999999999999999999999998776552 211 12222 35689999999876
Q ss_pred CCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCC
Q 002353 657 DSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEIL 736 (932)
Q Consensus 657 ~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 736 (932)
.|+.||.+||-++..+. . .
T Consensus 163 ----------~lt~PLrdRFGi~~rle-f--------------------------------------------------Y 181 (332)
T COG2255 163 ----------MLTNPLRDRFGIIQRLE-F--------------------------------------------------Y 181 (332)
T ss_pred ----------cccchhHHhcCCeeeee-c--------------------------------------------------C
Confidence 79999999999999871 1 2
Q ss_pred CHHHHHHHHH-HHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHH
Q 002353 737 PQDLLKKYIT-YAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMA 815 (932)
Q Consensus 737 ~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~A 815 (932)
..+.|.+.+. .|+ .+.-.++++++..|.+. ..+|+|--..|+|...-+|-......|+..=+..|
T Consensus 182 ~~~eL~~Iv~r~a~-~l~i~i~~~~a~eIA~r-------------SRGTPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~a 247 (332)
T COG2255 182 TVEELEEIVKRSAK-ILGIEIDEEAALEIARR-------------SRGTPRIANRLLRRVRDFAQVKGDGDIDRDIADKA 247 (332)
T ss_pred CHHHHHHHHHHHHH-HhCCCCChHHHHHHHHh-------------ccCCcHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 3344555555 343 46778889998888874 34789999999999999999999999999988888
Q ss_pred HHHH
Q 002353 816 IRVL 819 (932)
Q Consensus 816 I~l~ 819 (932)
+..+
T Consensus 248 L~~L 251 (332)
T COG2255 248 LKML 251 (332)
T ss_pred HHHh
Confidence 7665
No 55
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.54 E-value=1.3e-14 Score=142.41 Aligned_cols=129 Identities=24% Similarity=0.392 Sum_probs=94.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe--cCCCcccccccceeecCcccchhhhccCceecc--CCCeeeeccccccC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT--TGKGASAVGLTAAVHKDPVTREWTLEGGALVLA--DRGICLIDEFDKMN 612 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~--~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lA--d~GIl~IDE~dkm~ 612 (932)
||||+|+||||||.+++++++.....++. ....++...|.+.+... .+......|.++.+ .+++|+||||++++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~~~~~l~~a~~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS--NGQFEFKDGPLVRAMRKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET---TTTTCEEE-CCCTTHHEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec--ccccccccccccccccceeEEEECCcccCC
Confidence 69999999999999999999998777644 33345555666665544 45556677888765 78999999999999
Q ss_pred cchhhhHHHHHhhceeeeeccceeEeecc------ceEEEeeeCCCCCccCCCCCcccccCCChhhhccc
Q 002353 613 DQDRVSIHEAMEQQSISISKAGIVTSLQA------RCSVIAAANPVGGRYDSSKTFSENVELTDPIISRF 676 (932)
Q Consensus 613 ~~~~~~L~eamEqq~isi~kagi~~~l~a------r~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRF 676 (932)
+..+..|+.+++.+.+.+...+.....+. .+.||||+||.. ...-.++++|++||
T Consensus 79 ~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~---------~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 79 PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD---------KGRKELSPALLDRF 139 (139)
T ss_dssp HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST-----------TTTTCHHHHTT-
T ss_pred HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC---------CCcCcCCHHHHhhC
Confidence 99999999999999887655555444443 499999999965 11228999999998
No 56
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.52 E-value=1e-13 Score=152.71 Aligned_cols=227 Identities=18% Similarity=0.123 Sum_probs=128.9
Q ss_pred HHhhcccccChHHHHHHHhh--hhhcCccccccCccc-ccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEe-cCC--Cc
Q 002353 497 IKSIAPSIYGHEDIKTALAL--SMFGGQEKNVKGKHR-LRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYT-TGK--GA 570 (932)
Q Consensus 497 ~~siap~I~G~~~vK~aill--aL~gg~~k~~~~~~~-~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~-~g~--~s 570 (932)
.+.+.-++.|.+.+|+.|.- .+.-.......-|.. ..+..|+||+||||||||++|+++++.+...-+. .|. ..
T Consensus 17 ~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v 96 (284)
T TIGR02880 17 LDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSV 96 (284)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEe
Confidence 33344457899999998732 111110000001111 1123499999999999999998887765321000 000 00
Q ss_pred ccccccceeecCcccchhhhccCceeccCCCeeeeccccccC---------cchhhhHHHHHhhceeeeeccceeEeecc
Q 002353 571 SAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMN---------DQDRVSIHEAMEQQSISISKAGIVTSLQA 641 (932)
Q Consensus 571 s~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~---------~~~~~~L~eamEqq~isi~kagi~~~l~a 641 (932)
+...+....... +. ....+.+..|.+||+||||++.|. ...+..|++.|+.+. .
T Consensus 97 ~~~~l~~~~~g~--~~--~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~-------------~ 159 (284)
T TIGR02880 97 TRDDLVGQYIGH--TA--PKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR-------------D 159 (284)
T ss_pred cHHHHhHhhccc--ch--HHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC-------------C
Confidence 001111111000 00 011234556788999999999882 334567888888542 4
Q ss_pred ceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchh
Q 002353 642 RCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESE 721 (932)
Q Consensus 642 r~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~ 721 (932)
++.||+|+++.. ...-..+.++|.+||+..+.+.+.. .+.-..|..+
T Consensus 160 ~~~vI~a~~~~~--------~~~~~~~np~L~sR~~~~i~fp~l~-~edl~~I~~~------------------------ 206 (284)
T TIGR02880 160 DLVVILAGYKDR--------MDSFFESNPGFSSRVAHHVDFPDYS-EAELLVIAGL------------------------ 206 (284)
T ss_pred CEEEEEeCCcHH--------HHHHHhhCHHHHhhCCcEEEeCCcC-HHHHHHHHHH------------------------
Confidence 567888887641 0011256899999999888874332 2111222222
Q ss_pred hhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHh
Q 002353 722 EDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARM 801 (932)
Q Consensus 722 ~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl 801 (932)
| +++ ..+.+++++.+.+..|....+ ...||+|+|+|.++++.+......
T Consensus 207 ----------------------~---l~~-~~~~l~~~a~~~L~~~l~~~~-----~~~~~GN~R~lrn~ve~~~~~~~~ 255 (284)
T TIGR02880 207 ----------------------M---LKE-QQYRFSAEAEEAFADYIALRR-----TQPHFANARSIRNAIDRARLRQAN 255 (284)
T ss_pred ----------------------H---HHH-hccccCHHHHHHHHHHHHHhC-----CCCCCChHHHHHHHHHHHHHHHHH
Confidence 1 222 235577777777777544332 238999999999999988877776
Q ss_pred hCC
Q 002353 802 RLR 804 (932)
Q Consensus 802 ~lr 804 (932)
++.
T Consensus 256 r~~ 258 (284)
T TIGR02880 256 RLF 258 (284)
T ss_pred HHh
Confidence 654
No 57
>CHL00181 cbbX CbbX; Provisional
Probab=99.51 E-value=1.2e-13 Score=152.07 Aligned_cols=228 Identities=17% Similarity=0.123 Sum_probs=130.0
Q ss_pred HHHHHHhhcccccChHHHHHHHhhh----hhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEe-cC
Q 002353 493 GERIIKSIAPSIYGHEDIKTALALS----MFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYT-TG 567 (932)
Q Consensus 493 ~~~l~~siap~I~G~~~vK~ailla----L~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~-~g 567 (932)
.+.+..++.++++|++.+|+.|.-. .+....+...- ...+...|+||+|+||||||++|+++++.+...-+. .+
T Consensus 14 ~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~-~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~ 92 (287)
T CHL00181 14 IQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGL-TSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKG 92 (287)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCC
Confidence 4567788889999999999976321 11111111100 112234599999999999999999998875321110 00
Q ss_pred C--CcccccccceeecCcccchhhhccCceeccCCCeeeecccccc---------CcchhhhHHHHHhhceeeeecccee
Q 002353 568 K--GASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKM---------NDQDRVSIHEAMEQQSISISKAGIV 636 (932)
Q Consensus 568 ~--~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm---------~~~~~~~L~eamEqq~isi~kagi~ 636 (932)
. ..+...+.+..... +. ....+.+..|.+||+||||++.+ ..+.+..|+..|+.+.
T Consensus 93 ~~~~v~~~~l~~~~~g~--~~--~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~--------- 159 (287)
T CHL00181 93 HLLTVTRDDLVGQYIGH--TA--PKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR--------- 159 (287)
T ss_pred ceEEecHHHHHHHHhcc--ch--HHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC---------
Confidence 0 00011111111000 00 00123455678899999999987 3345677888888542
Q ss_pred EeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCC
Q 002353 637 TSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKS 716 (932)
Q Consensus 637 ~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~ 716 (932)
.++.||+|+++.. ...-..+.++|.+||+.++.+.+.. ...-..|+..
T Consensus 160 ----~~~~vI~ag~~~~--------~~~~~~~np~L~sR~~~~i~F~~~t-~~el~~I~~~------------------- 207 (287)
T CHL00181 160 ----DDLVVIFAGYKDR--------MDKFYESNPGLSSRIANHVDFPDYT-PEELLQIAKI------------------- 207 (287)
T ss_pred ----CCEEEEEeCCcHH--------HHHHHhcCHHHHHhCCceEEcCCcC-HHHHHHHHHH-------------------
Confidence 3467888876531 0111245689999999988874332 2221222222
Q ss_pred ccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHH
Q 002353 717 KNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSE 796 (932)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAe 796 (932)
++++ ....+++++...+..++...+ ...+++++|.+.+++.-+.
T Consensus 208 ------------------------------~l~~-~~~~l~~~~~~~L~~~i~~~~-----~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 208 ------------------------------MLEE-QQYQLTPEAEKALLDYIKKRM-----EQPLFANARSVRNALDRAR 251 (287)
T ss_pred ------------------------------HHHH-hcCCCChhHHHHHHHHHHHhC-----CCCCCccHHHHHHHHHHHH
Confidence 2221 234566666666666554322 2367899999999998665
Q ss_pred HHHHhh
Q 002353 797 AHARMR 802 (932)
Q Consensus 797 A~Akl~ 802 (932)
..-..+
T Consensus 252 ~~~~~r 257 (287)
T CHL00181 252 MRQANR 257 (287)
T ss_pred HHHHHH
Confidence 544433
No 58
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.51 E-value=1.5e-13 Score=157.85 Aligned_cols=158 Identities=17% Similarity=0.211 Sum_probs=96.8
Q ss_pred HHHhhcccccChHHHHHHHhhhhhcCcccc---ccC-cccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCc-
Q 002353 496 IIKSIAPSIYGHEDIKTALALSMFGGQEKN---VKG-KHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGA- 570 (932)
Q Consensus 496 l~~siap~I~G~~~vK~aillaL~gg~~k~---~~~-~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~s- 570 (932)
|.+.+...|+|++.+|+++..++.....+- ... ......+-|+||+||||||||++|+++|+.+...++......
T Consensus 65 i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l 144 (412)
T PRK05342 65 IKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTL 144 (412)
T ss_pred HHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 334444458999999999988874211100 000 001123449999999999999999999998876655421111
Q ss_pred ccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcc--------------hhhhHHHHHhhceeeeecccee
Q 002353 571 SAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQ--------------DRVSIHEAMEQQSISISKAGIV 636 (932)
Q Consensus 571 s~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~--------------~~~~L~eamEqq~isi~kagi~ 636 (932)
+..|..+........+.+....|.+..+.+||+|||||++++.. .|.+|+++||...+.+...|..
T Consensus 145 ~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~ 224 (412)
T PRK05342 145 TEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGR 224 (412)
T ss_pred ccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCc
Confidence 11111111000000111111234556678999999999999764 6889999999766666544544
Q ss_pred EeeccceEEEeeeCCCC
Q 002353 637 TSLQARCSVIAAANPVG 653 (932)
Q Consensus 637 ~~l~ar~sIIAAaNp~~ 653 (932)
..-...+.+|+|+|..+
T Consensus 225 ~~~~~~~~~i~t~nilf 241 (412)
T PRK05342 225 KHPQQEFIQVDTTNILF 241 (412)
T ss_pred CcCCCCeEEeccCCcee
Confidence 33346788899999843
No 59
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.47 E-value=1.6e-12 Score=144.46 Aligned_cols=219 Identities=16% Similarity=0.221 Sum_probs=137.0
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecC
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKD 582 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd 582 (932)
.+.|++.++..+...+.+..... ...-|++|+||||||||++|+.+++.+...+...... .. ..
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~-------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~--~~-------~~ 68 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQ-------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGP--AL-------EK 68 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcC-------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccc--hh-------cC
Confidence 57899999988776664321000 0112899999999999999999999875443321100 00 00
Q ss_pred cccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeee-ccc----eeEeeccceEEEeeeCCCCCccC
Q 002353 583 PVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISIS-KAG----IVTSLQARCSVIAAANPVGGRYD 657 (932)
Q Consensus 583 ~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~-kag----i~~~l~ar~sIIAAaNp~~Gry~ 657 (932)
.+.+... .-.+..++++||||++.+++..+..|+.+|+.....+- .++ ........+.+|+++|...
T Consensus 69 --~~~l~~~--l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~---- 140 (305)
T TIGR00635 69 --PGDLAAI--LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAG---- 140 (305)
T ss_pred --chhHHHH--HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCcc----
Confidence 0100000 00123457999999999999988899999987653321 111 1111223477888887753
Q ss_pred CCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCC
Q 002353 658 SSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILP 737 (932)
Q Consensus 658 ~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 737 (932)
.+++++.|||.+++.+ +.+ +
T Consensus 141 ---------~l~~~l~sR~~~~~~l-~~l--------------------------------------------------~ 160 (305)
T TIGR00635 141 ---------MLTSPLRDRFGIILRL-EFY--------------------------------------------------T 160 (305)
T ss_pred ---------ccCHHHHhhcceEEEe-CCC--------------------------------------------------C
Confidence 6788999999877766 222 2
Q ss_pred HHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Q 002353 738 QDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIR 817 (932)
Q Consensus 738 ~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~ 817 (932)
.+.++.++...-......+++++.+.|.+.. ..++|.+..+++.+...|...-...|+.+++..++.
T Consensus 161 ~~e~~~il~~~~~~~~~~~~~~al~~ia~~~-------------~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~ 227 (305)
T TIGR00635 161 VEELAEIVSRSAGLLNVEIEPEAALEIARRS-------------RGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALE 227 (305)
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh-------------CCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 2233333332111234578888888877641 245688888888777777666667799999998876
Q ss_pred H
Q 002353 818 V 818 (932)
Q Consensus 818 l 818 (932)
.
T Consensus 228 ~ 228 (305)
T TIGR00635 228 M 228 (305)
T ss_pred H
Confidence 6
No 60
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.46 E-value=1.4e-12 Score=146.74 Aligned_cols=219 Identities=19% Similarity=0.249 Sum_probs=140.2
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEec-CCCcccccccceeec
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTT-GKGASAVGLTAAVHK 581 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~-g~~ss~~gLta~v~k 581 (932)
.++|++.++..+...+........ ..-|+||+||||||||++|+++++.....+... +.....
T Consensus 26 ~~vG~~~~~~~l~~~l~~~~~~~~-------~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~--------- 89 (328)
T PRK00080 26 EFIGQEKVKENLKIFIEAAKKRGE-------ALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK--------- 89 (328)
T ss_pred HhcCcHHHHHHHHHHHHHHHhcCC-------CCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC---------
Confidence 468999999888766653211100 111899999999999999999999876543321 110000
Q ss_pred CcccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeee--eccceeEe---eccceEEEeeeCCCCCcc
Q 002353 582 DPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISI--SKAGIVTS---LQARCSVIAAANPVGGRY 656 (932)
Q Consensus 582 d~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi--~kagi~~~---l~ar~sIIAAaNp~~Gry 656 (932)
.+. +..-.-.+..++++|||||+.++...+..|+.+|+...+.+ .++..... ...++.+|+|+|+..
T Consensus 90 ---~~~--l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~--- 161 (328)
T PRK00080 90 ---PGD--LAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAG--- 161 (328)
T ss_pred ---hHH--HHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcc---
Confidence 000 00000012467899999999999888888899999876443 12111111 123478899998754
Q ss_pred CCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCC
Q 002353 657 DSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEIL 736 (932)
Q Consensus 657 ~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 736 (932)
.++++|.+||.+++.+ +.+
T Consensus 162 ----------~l~~~L~sRf~~~~~l-~~~-------------------------------------------------- 180 (328)
T PRK00080 162 ----------LLTSPLRDRFGIVQRL-EFY-------------------------------------------------- 180 (328)
T ss_pred ----------cCCHHHHHhcCeeeec-CCC--------------------------------------------------
Confidence 6788999999877766 222
Q ss_pred CHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 002353 737 PQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAI 816 (932)
Q Consensus 737 ~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI 816 (932)
+.+.+..++...-......+++++.+.|.+. ...++|.+..+++.....|.......|+.+++..++
T Consensus 181 ~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~-------------~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l 247 (328)
T PRK00080 181 TVEELEKIVKRSARILGVEIDEEGALEIARR-------------SRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKAL 247 (328)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH-------------cCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 2223333333221123556788888887764 235679899999888887877667789999999887
Q ss_pred HHH
Q 002353 817 RVL 819 (932)
Q Consensus 817 ~l~ 819 (932)
..+
T Consensus 248 ~~~ 250 (328)
T PRK00080 248 DML 250 (328)
T ss_pred HHh
Confidence 543
No 61
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.44 E-value=2.2e-12 Score=142.99 Aligned_cols=222 Identities=23% Similarity=0.321 Sum_probs=131.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCc-eeccCCCeeeeccccccCcch
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGA-LVLADRGICLIDEFDKMNDQD 615 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Ga-l~lAd~GIl~IDE~dkm~~~~ 615 (932)
+++|+||||||||+||+.+++.....+.... +. ++++ ++- ....-++-. .....+-|+|||||.++++..
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~f~~~s--Av----~~gv-kdl--r~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q 120 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAAFEALS--AV----TSGV-KDL--REIIEEARKNRLLGRRTILFLDEIHRFNKAQ 120 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCceEEec--cc----cccH-HHH--HHHHHHHHHHHhcCCceEEEEehhhhcChhh
Confidence 8999999999999999999998877665421 11 1111 110 000001101 111234589999999999999
Q ss_pred hhhHHHHHhhceeeeeccceeEeeccceEEEeee--CCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHH
Q 002353 616 RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAA--NPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEM 693 (932)
Q Consensus 616 ~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAa--Np~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~ 693 (932)
|.+|+..||.|+|.+ |+|| ||.+ .+.++|+||.-++ ++....+.+....
T Consensus 121 QD~lLp~vE~G~iil---------------IGATTENPsF-------------~ln~ALlSR~~vf-~lk~L~~~di~~~ 171 (436)
T COG2256 121 QDALLPHVENGTIIL---------------IGATTENPSF-------------ELNPALLSRARVF-ELKPLSSEDIKKL 171 (436)
T ss_pred hhhhhhhhcCCeEEE---------------EeccCCCCCe-------------eecHHHhhhhhee-eeecCCHHHHHHH
Confidence 999999999998654 7776 5533 8999999999654 4432222222222
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHh
Q 002353 694 LAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRR 773 (932)
Q Consensus 694 La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~ 773 (932)
|.+-+.... + .+. ...+.++++|.+.|...
T Consensus 172 l~ra~~~~~-r-----------------------------------------gl~--~~~~~i~~~a~~~l~~~------ 201 (436)
T COG2256 172 LKRALLDEE-R-----------------------------------------GLG--GQIIVLDEEALDYLVRL------ 201 (436)
T ss_pred HHHHHhhhh-c-----------------------------------------CCC--cccccCCHHHHHHHHHh------
Confidence 211111100 0 000 11345778888888774
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhhh--hhhhhchHHHHHHHHhhhhcchhhhHH
Q 002353 774 ESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSFI--STQKFGVQKALQRSFRKYMTFKKEYNA 851 (932)
Q Consensus 774 ~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~~--~~~k~s~~~~l~~~f~~~~~~~~~~~~ 851 (932)
..+.+|..-+++.++.-.++-+- ..+.+++.+.+.--...+- ..+.+.+..+++++.+ +.|.++
T Consensus 202 -------s~GD~R~aLN~LE~~~~~~~~~~--~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvR-----GSD~dA 267 (436)
T COG2256 202 -------SNGDARRALNLLELAALSAEPDE--VLILELLEEILQRRSARFDKDGDAHYDLISALHKSVR-----GSDPDA 267 (436)
T ss_pred -------cCchHHHHHHHHHHHHHhcCCCc--ccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhc-----cCCcCH
Confidence 23678888888888776665332 2235555443322111111 1345677888888776 567777
Q ss_pred HHHHHHHHH
Q 002353 852 LLLDLLREL 860 (932)
Q Consensus 852 ~l~~~l~~~ 860 (932)
.|+++-|-+
T Consensus 268 ALyylARmi 276 (436)
T COG2256 268 ALYYLARMI 276 (436)
T ss_pred HHHHHHHHH
Confidence 777666544
No 62
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.43 E-value=2.3e-12 Score=147.53 Aligned_cols=157 Identities=17% Similarity=0.236 Sum_probs=95.5
Q ss_pred HHHHHhhcccccChHHHHHHHhhhhhcCccc-----cccC-cccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecC
Q 002353 494 ERIIKSIAPSIYGHEDIKTALALSMFGGQEK-----NVKG-KHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTG 567 (932)
Q Consensus 494 ~~l~~siap~I~G~~~vK~aillaL~gg~~k-----~~~~-~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g 567 (932)
..|...+...|+|++.+|+++..++...... .... .....+..|+||+||||||||.+|+++|+.+...+....
T Consensus 69 ~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~d 148 (413)
T TIGR00382 69 KEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIAD 148 (413)
T ss_pred HHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEec
Confidence 3456667777999999999999887421100 0000 000123459999999999999999999988765543311
Q ss_pred -CCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCc--------------chhhhHHHHHhhcee-eee
Q 002353 568 -KGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMND--------------QDRVSIHEAMEQQSI-SIS 631 (932)
Q Consensus 568 -~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~--------------~~~~~L~eamEqq~i-si~ 631 (932)
...+..|+.+.-.....+......++.+..+.+||+||||++++.. ..|..|+++|| |++ .+.
T Consensus 149 a~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLe-G~~~~v~ 227 (413)
T TIGR00382 149 ATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIE-GTVANVP 227 (413)
T ss_pred hhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhh-ccceecc
Confidence 1111111111100000111111234566678899999999999987 57889999997 554 333
Q ss_pred ccceeEeeccceEEEeeeCC
Q 002353 632 KAGIVTSLQARCSVIAAANP 651 (932)
Q Consensus 632 kagi~~~l~ar~sIIAAaNp 651 (932)
..|....-...+.+|.|+|.
T Consensus 228 ~~~gr~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 228 PQGGRKHPYQEFIQIDTSNI 247 (413)
T ss_pred cCCCccccCCCeEEEEcCCc
Confidence 33332222356788999998
No 63
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.41 E-value=1.9e-13 Score=139.09 Aligned_cols=134 Identities=16% Similarity=0.238 Sum_probs=90.5
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCc---EEe--cCCCc-cc-ccccceeecCcccchhhhccCceeccCCCeeeeccc
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRA---VYT--TGKGA-SA-VGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEF 608 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~---v~~--~g~~s-s~-~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~ 608 (932)
.||||+|++||||+.+|+++|..++|. +.. ++.-. .. ....++..+...++......|.|..|++|++|||||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I 102 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEI 102 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETG
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccceEEeecch
Confidence 499999999999999999999998864 222 21111 10 111223334444444455679999999999999999
Q ss_pred cccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhcccc
Q 002353 609 DKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFD 677 (932)
Q Consensus 609 dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFD 677 (932)
+.|++..|..|+.+|+.+++ .+.|.....+.+++||+|||...... ..+-.+.+.|+.|+.
T Consensus 103 ~~L~~~~Q~~Ll~~l~~~~~--~~~g~~~~~~~~~RiI~st~~~l~~~------v~~g~fr~dLy~rL~ 163 (168)
T PF00158_consen 103 EDLPPELQAKLLRVLEEGKF--TRLGSDKPVPVDVRIIASTSKDLEEL------VEQGRFREDLYYRLN 163 (168)
T ss_dssp GGS-HHHHHHHHHHHHHSEE--ECCTSSSEEE--EEEEEEESS-HHHH------HHTTSS-HHHHHHHT
T ss_pred hhhHHHHHHHHHHHHhhchh--ccccccccccccceEEeecCcCHHHH------HHcCCChHHHHHHhc
Confidence 99999999999999999985 45666667789999999999764221 222345555665554
No 64
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.9e-12 Score=151.63 Aligned_cols=159 Identities=21% Similarity=0.340 Sum_probs=104.8
Q ss_pred hcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCc-ccccccce
Q 002353 500 IAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGA-SAVGLTAA 578 (932)
Q Consensus 500 iap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~s-s~~gLta~ 578 (932)
+-..=||.+.||..|+-.|.-+.... .+.|. -+||+||||+|||.|++++|+.+.|.++-...|. .-..-.-+
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~-----~~kGp-ILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRG 394 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTK-----KLKGP-ILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRG 394 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhc-----cCCCc-EEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcc
Confidence 45567999999999986665432221 12332 5899999999999999999999999876531110 00000001
Q ss_pred eecCcccchhhhccCceecc------CCCeeeeccccccCcchh----hhHHHHHh-hceeeeeccceeEee-ccceEEE
Q 002353 579 VHKDPVTREWTLEGGALVLA------DRGICLIDEFDKMNDQDR----VSIHEAME-QQSISISKAGIVTSL-QARCSVI 646 (932)
Q Consensus 579 v~kd~~~g~~~le~Gal~lA------d~GIl~IDE~dkm~~~~~----~~L~eamE-qq~isi~kagi~~~l-~ar~sII 646 (932)
.++... .--||.+.++ .+-+++|||||||..+.| .+|+|+|+ .|.-++.-.-....+ -+.+.+|
T Consensus 395 HRRTYI----GamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFi 470 (782)
T COG0466 395 HRRTYI----GAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFI 470 (782)
T ss_pred cccccc----ccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEE
Confidence 111100 0124554433 567999999999998765 68999997 354444332222222 2578999
Q ss_pred eeeCCCCCccCCCCCcccccCCChhhhccccEEEE
Q 002353 647 AAANPVGGRYDSSKTFSENVELTDPIISRFDVLCV 681 (932)
Q Consensus 647 AAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~ 681 (932)
||||... .+|.|||+|..+|-+
T Consensus 471 aTANsl~-------------tIP~PLlDRMEiI~l 492 (782)
T COG0466 471 ATANSLD-------------TIPAPLLDRMEVIRL 492 (782)
T ss_pred eecCccc-------------cCChHHhcceeeeee
Confidence 9999864 699999999998876
No 65
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.1e-12 Score=148.15 Aligned_cols=215 Identities=20% Similarity=0.276 Sum_probs=135.9
Q ss_pred HHHHHHHHHHhcChhhHHHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHH
Q 002353 477 QEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 477 ~~d~~~i~~l~~~~~i~~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va 556 (932)
..++++|-++-++|.-|.+| || .++. .|||+||||||||.|||++|
T Consensus 313 K~ELeEiVefLkdP~kftrL-----------------------GG---KLPK--------GVLLvGPPGTGKTlLARAvA 358 (752)
T KOG0734|consen 313 KQELEEIVEFLKDPTKFTRL-----------------------GG---KLPK--------GVLLVGPPGTGKTLLARAVA 358 (752)
T ss_pred HHHHHHHHHHhcCcHHhhhc-----------------------cC---cCCC--------ceEEeCCCCCchhHHHHHhh
Confidence 45677888888888776654 44 1222 69999999999999999999
Q ss_pred HhCCCcEEecCCCccccccccee----ecCcccchhhhccCceeccCCCeeeeccccccCcchh--------hhHHHHHh
Q 002353 557 KTGQRAVYTTGKGASAVGLTAAV----HKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDR--------VSIHEAME 624 (932)
Q Consensus 557 ~~~~r~v~~~g~~ss~~gLta~v----~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~--------~~L~eamE 624 (932)
..+...+|... |+.+-....++ +++-+. .|-.. .-+|+||||||.+....- ..|++.+-
T Consensus 359 GEA~VPFF~~s-GSEFdEm~VGvGArRVRdLF~-------aAk~~-APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLv 429 (752)
T KOG0734|consen 359 GEAGVPFFYAS-GSEFDEMFVGVGARRVRDLFA-------AAKAR-APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLV 429 (752)
T ss_pred cccCCCeEecc-ccchhhhhhcccHHHHHHHHH-------HHHhc-CCeEEEEechhhhcccCCccHHHHHHHHHHHHHH
Confidence 99998888752 33322222221 111110 01111 237999999998764421 22333322
Q ss_pred hceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEEEEecCCCChhHhHHHHHHHHhhc
Q 002353 625 QQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLCVVKDVVDPVVDEMLAKFVIDSH 702 (932)
Q Consensus 625 qq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~~l~D~~d~~~D~~La~~vl~~h 702 (932)
.-.| .+-|..+.||||||.+. .|+++|++ |||..+.+ +.||-.-... ||..|
T Consensus 430 ------EmDG--F~qNeGiIvigATNfpe-------------~LD~AL~RPGRFD~~v~V-p~PDv~GR~e----IL~~y 483 (752)
T KOG0734|consen 430 ------EMDG--FKQNEGIIVIGATNFPE-------------ALDKALTRPGRFDRHVTV-PLPDVRGRTE----ILKLY 483 (752)
T ss_pred ------HhcC--cCcCCceEEEeccCChh-------------hhhHHhcCCCccceeEec-CCCCcccHHH----HHHHH
Confidence 1122 23356789999999876 78999998 99999998 4444333333 34444
Q ss_pred cCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcc
Q 002353 703 FKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVP 782 (932)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~p 782 (932)
....+.. . -++...+ || ++..
T Consensus 484 l~ki~~~---------------------~---~VD~~ii------AR-----------------------------GT~G 504 (752)
T KOG0734|consen 484 LSKIPLD---------------------E---DVDPKII------AR-----------------------------GTPG 504 (752)
T ss_pred HhcCCcc---------------------c---CCCHhHh------cc-----------------------------CCCC
Confidence 3332221 0 0111111 22 2344
Q ss_pred cCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 002353 783 IAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVL 819 (932)
Q Consensus 783 itvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~ 819 (932)
.+-..|++||..|.-.|.+.+.+.|+..|++.|-.-+
T Consensus 505 FsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 505 FSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDRI 541 (752)
T ss_pred CchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhhhe
Confidence 6778899999999999999999999999999886544
No 66
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.39 E-value=5.5e-12 Score=137.32 Aligned_cols=221 Identities=16% Similarity=0.158 Sum_probs=121.5
Q ss_pred cccChHHHHHHHhh--hhhcCccccccCccc-ccCCceEEEeCCCCchHHHHHHHHHHhCCCc-EEecCCC--ccccccc
Q 002353 503 SIYGHEDIKTALAL--SMFGGQEKNVKGKHR-LRGDINVLLLGDPGTAKSQFLKYVEKTGQRA-VYTTGKG--ASAVGLT 576 (932)
Q Consensus 503 ~I~G~~~vK~aill--aL~gg~~k~~~~~~~-~RgdinvLLvGdPGTGKS~Lak~va~~~~r~-v~~~g~~--ss~~gLt 576 (932)
+++|++.+|+.|-- +..--.......|.. ..+-.|+||+||||||||++|+++++.+... ....+.. .+...+.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~ 86 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLV 86 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhh
Confidence 46899999987741 111000000001111 1223499999999999999999999864211 0000000 0001111
Q ss_pred ceeecCcccchhhhccCceeccCCCeeeeccccccCc--------chhhhHHHHHhhceeeeeccceeEeeccceEEEee
Q 002353 577 AAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMND--------QDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAA 648 (932)
Q Consensus 577 a~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~--------~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAA 648 (932)
+..... +. ..-.+.+..|.+||+||||++.|.. +.+..|+..|++.. ..+.+|+|
T Consensus 87 ~~~~g~--~~--~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~-------------~~~~vila 149 (261)
T TIGR02881 87 GEYIGH--TA--QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR-------------NEFVLILA 149 (261)
T ss_pred hhhccc--hH--HHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC-------------CCEEEEec
Confidence 110000 00 0012344556789999999999863 23456777777532 33566676
Q ss_pred eCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhc
Q 002353 649 ANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVAD 728 (932)
Q Consensus 649 aNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (932)
+++.... .-..++++|.+||+..+.+.+. ++..-.
T Consensus 150 ~~~~~~~--------~~~~~~p~L~sRf~~~i~f~~~-~~~el~------------------------------------ 184 (261)
T TIGR02881 150 GYSDEMD--------YFLSLNPGLRSRFPISIDFPDY-TVEELM------------------------------------ 184 (261)
T ss_pred CCcchhH--------HHHhcChHHHhccceEEEECCC-CHHHHH------------------------------------
Confidence 6653210 1125778999999887776221 111111
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhh
Q 002353 729 REIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMR 802 (932)
Q Consensus 729 ~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~ 802 (932)
.++++++ +. ..-.+++++...|..++..+++.. ...++++|.+.+++..|..+...+
T Consensus 185 ----------~Il~~~~---~~-~~~~l~~~a~~~l~~~~~~~~~~~---~~~~gn~R~~~n~~e~a~~~~~~r 241 (261)
T TIGR02881 185 ----------EIAERMV---KE-REYKLTEEAKWKLREHLYKVDQLS---SREFSNARYVRNIIEKAIRRQAVR 241 (261)
T ss_pred ----------HHHHHHH---HH-cCCccCHHHHHHHHHHHHHHHhcc---CCCCchHHHHHHHHHHHHHHHHHH
Confidence 1222222 22 234688888888888777665422 245688999999999887766433
No 67
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.35 E-value=2.2e-11 Score=147.24 Aligned_cols=158 Identities=19% Similarity=0.223 Sum_probs=99.1
Q ss_pred hcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCC----------c-EEecCC
Q 002353 500 IAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQR----------A-VYTTGK 568 (932)
Q Consensus 500 iap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r----------~-v~~~g~ 568 (932)
-.+.|+|++...++++-.+..+. .-+++|+||||||||++|+.++..+.. . +...+.
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~~------------~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~ 219 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASPF------------PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGT 219 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcCC------------CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEech
Confidence 34458899888777665554331 128999999999999999999877531 1 111111
Q ss_pred Ccc--c----ccccceeecC---------cccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeecc
Q 002353 569 GAS--A----VGLTAAVHKD---------PVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKA 633 (932)
Q Consensus 569 ~ss--~----~gLta~v~kd---------~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~ka 633 (932)
... . ..+.+.+... ..+|......|.+..+++|++||||++.|+...|..|+.+|+++.+.+...
T Consensus 220 ~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~ 299 (615)
T TIGR02903 220 TLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSS 299 (615)
T ss_pred hccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecc
Confidence 110 0 0111111000 001222234567778899999999999999999999999999988765432
Q ss_pred ce---------------eEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEE
Q 002353 634 GI---------------VTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCV 681 (932)
Q Consensus 634 gi---------------~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~ 681 (932)
.. ....++++.+|+|++.... .++++|.+||..+.+
T Consensus 300 ~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~------------~l~~aLrSR~~~i~~ 350 (615)
T TIGR02903 300 YYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE------------EINPALRSRCAEVFF 350 (615)
T ss_pred eeccCCcccchhhhhhcccCccceEEEEEecccccc------------ccCHHHHhceeEEEe
Confidence 10 1112456677777655321 577899999986543
No 68
>PHA02244 ATPase-like protein
Probab=99.35 E-value=3e-12 Score=142.99 Aligned_cols=140 Identities=17% Similarity=0.277 Sum_probs=99.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCcee--ccCCCeeeeccccccCcc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALV--LADRGICLIDEFDKMNDQ 614 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~--lAd~GIl~IDE~dkm~~~ 614 (932)
||||+||||||||++++++++.+.+.++..........+.+.+. ..+.| ..|.+. .+.+|+|+||||+.++++
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~---~~g~~--~dgpLl~A~~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFID---ANGKF--HETPFYEAFKKGGLFFIDEIDASIPE 195 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhccccc---ccccc--cchHHHHHhhcCCEEEEeCcCcCCHH
Confidence 99999999999999999999998877665432111222222111 12223 444443 358899999999999999
Q ss_pred hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCC
Q 002353 615 DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVD 687 (932)
Q Consensus 615 ~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d 687 (932)
.+..|+.+++++.+.+ .|.....+.++++|||+||....|+. .+...-.|++++++||-.+.+ |.+.
T Consensus 196 vq~~L~~lLd~r~l~l--~g~~i~~h~~FRlIATsN~~~~G~~~--~y~G~k~L~~AllDRFv~I~~--dyp~ 262 (383)
T PHA02244 196 ALIIINSAIANKFFDF--ADERVTAHEDFRVISAGNTLGKGADH--IYVARNKIDGATLDRFAPIEF--DYDE 262 (383)
T ss_pred HHHHHHHHhccCeEEe--cCcEEecCCCEEEEEeeCCCccCccc--ccCCCcccCHHHHhhcEEeeC--CCCc
Confidence 9999999999886544 56666778899999999997644421 222334889999999964333 5554
No 69
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.3e-11 Score=134.84 Aligned_cols=192 Identities=23% Similarity=0.268 Sum_probs=119.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccC---CCeeeeccccccCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLAD---RGICLIDEFDKMND 613 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd---~GIl~IDE~dkm~~ 613 (932)
.|||+||||||||.|||+||....-.+.-. .++..+ .+--..|. .+.-..+.+|. -.|+||||||.+..
T Consensus 187 GVLLYGPPGTGKTLLAkAVA~~T~AtFIrv-vgSElV------qKYiGEGa-RlVRelF~lArekaPsIIFiDEIDAIg~ 258 (406)
T COG1222 187 GVLLYGPPGTGKTLLAKAVANQTDATFIRV-VGSELV------QKYIGEGA-RLVRELFELAREKAPSIIFIDEIDAIGA 258 (406)
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCceEEEe-ccHHHH------HHHhccch-HHHHHHHHHHhhcCCeEEEEechhhhhc
Confidence 799999999999999999998765443321 111111 00000010 11111233442 37999999998743
Q ss_pred -----------chhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEEE
Q 002353 614 -----------QDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLC 680 (932)
Q Consensus 614 -----------~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~ 680 (932)
+.|-+|++.+.|- .|... ..++.||+|||.+. .|+++||+ |||-.+
T Consensus 259 kR~d~~t~gDrEVQRTmleLL~ql------DGFD~--~~nvKVI~ATNR~D-------------~LDPALLRPGR~DRkI 317 (406)
T COG1222 259 KRFDSGTSGDREVQRTMLELLNQL------DGFDP--RGNVKVIMATNRPD-------------ILDPALLRPGRFDRKI 317 (406)
T ss_pred ccccCCCCchHHHHHHHHHHHHhc------cCCCC--CCCeEEEEecCCcc-------------ccChhhcCCCccccee
Confidence 2466788887652 22211 34678999999976 79999999 999998
Q ss_pred EecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhH
Q 002353 681 VVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPD 760 (932)
Q Consensus 681 ~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea 760 (932)
-+ ..||..- -..|++.|.+.-... +-++.+.| |+.
T Consensus 318 Ef-plPd~~g----R~~Il~IHtrkM~l~------------------------~dvd~e~l------a~~---------- 352 (406)
T COG1222 318 EF-PLPDEEG----RAEILKIHTRKMNLA------------------------DDVDLELL------ARL---------- 352 (406)
T ss_pred ec-CCCCHHH----HHHHHHHHhhhccCc------------------------cCcCHHHH------HHh----------
Confidence 87 2444433 345667775432210 00122221 221
Q ss_pred HHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh
Q 002353 761 MEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLD 821 (932)
Q Consensus 761 ~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~ 821 (932)
.-..|-.+|.++.--|--+|--.-|.+||.+|+..|++-+..
T Consensus 353 -------------------~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 353 -------------------TEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred -------------------cCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHh
Confidence 122456678888887888887788999999999999876544
No 70
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.32 E-value=2.9e-11 Score=149.30 Aligned_cols=158 Identities=20% Similarity=0.350 Sum_probs=98.0
Q ss_pred HhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCc--ccccc
Q 002353 498 KSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGA--SAVGL 575 (932)
Q Consensus 498 ~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~s--s~~gL 575 (932)
.-+...+||++.+|+.|+-.|....... +.+|. .++|+||||+|||++++.+++.+++.++....+. ....+
T Consensus 318 ~~l~~~~~g~~~vK~~i~~~l~~~~~~~-----~~~g~-~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i 391 (784)
T PRK10787 318 EILDTDHYGLERVKDRILEYLAVQSRVN-----KIKGP-ILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEI 391 (784)
T ss_pred HHhhhhccCHHHHHHHHHHHHHHHHhcc-----cCCCc-eEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHh
Confidence 3355678999999999984443211111 12344 5999999999999999999999887765421111 11111
Q ss_pred cceeecCcccchhhhccCcee------ccCCCeeeeccccccCcchh----hhHHHHHhh-ceeeeeccceeEee-ccce
Q 002353 576 TAAVHKDPVTREWTLEGGALV------LADRGICLIDEFDKMNDQDR----VSIHEAMEQ-QSISISKAGIVTSL-QARC 643 (932)
Q Consensus 576 ta~v~kd~~~g~~~le~Gal~------lAd~GIl~IDE~dkm~~~~~----~~L~eamEq-q~isi~kagi~~~l-~ar~ 643 (932)
.+.. +. ..| -.+|.+. ...+.|++|||||+++...+ .+|+++|+. |..++...-....+ -.++
T Consensus 392 ~g~~-~~-~~g---~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 392 RGHR-RT-YIG---SMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred ccch-hc-cCC---CCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 1110 00 000 1233322 12456999999999998764 899999984 44444322111111 2578
Q ss_pred EEEeeeCCCCCccCCCCCcccccCCChhhhccccEEE
Q 002353 644 SVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLC 680 (932)
Q Consensus 644 sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~ 680 (932)
.+|||||.. .|++||++||.++-
T Consensus 467 ~~i~TaN~~--------------~i~~aLl~R~~ii~ 489 (784)
T PRK10787 467 MFVATSNSM--------------NIPAPLLDRMEVIR 489 (784)
T ss_pred EEEEcCCCC--------------CCCHHHhcceeeee
Confidence 899999852 59999999997544
No 71
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.29 E-value=4.3e-11 Score=140.30 Aligned_cols=217 Identities=22% Similarity=0.241 Sum_probs=126.4
Q ss_pred cccChHHHHHHHhhh--hhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceee
Q 002353 503 SIYGHEDIKTALALS--MFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVH 580 (932)
Q Consensus 503 ~I~G~~~vK~ailla--L~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~ 580 (932)
.|.|.+.+|..+... .+....+ ..| ++..-+|||+||||||||++|+++++.+...++....+. +.+...
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~--~~g--l~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~----l~~~~v 300 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQAS--NYG--LPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGK----LFGGIV 300 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHH--hcC--CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHH----hccccc
Confidence 578888888766531 1111000 001 111227999999999999999999999877766532111 111111
Q ss_pred cCcccchhhhccCcee---ccCCCeeeeccccccCcch------------hhhHHHHHhhceeeeeccceeEeeccceEE
Q 002353 581 KDPVTREWTLEGGALV---LADRGICLIDEFDKMNDQD------------RVSIHEAMEQQSISISKAGIVTSLQARCSV 645 (932)
Q Consensus 581 kd~~~g~~~le~Gal~---lAd~GIl~IDE~dkm~~~~------------~~~L~eamEqq~isi~kagi~~~l~ar~sI 645 (932)
... +..+. ..+. ....+|+||||||++.... ...++..|++ .+..+.|
T Consensus 301 Ges---e~~l~-~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~-------------~~~~V~v 363 (489)
T CHL00195 301 GES---ESRMR-QMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE-------------KKSPVFV 363 (489)
T ss_pred ChH---HHHHH-HHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc-------------CCCceEE
Confidence 100 00010 0011 1245899999999874321 1223444432 1345789
Q ss_pred EeeeCCCCCccCCCCCcccccCCChhhhc--cccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhh
Q 002353 646 IAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEED 723 (932)
Q Consensus 646 IAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~ 723 (932)
|||||... .|++++++ |||.++.+ +.|+...-..|.+..+.. .
T Consensus 364 IaTTN~~~-------------~Ld~allR~GRFD~~i~v-~lP~~~eR~~Il~~~l~~----~----------------- 408 (489)
T CHL00195 364 VATANNID-------------LLPLEILRKGRFDEIFFL-DLPSLEEREKIFKIHLQK----F----------------- 408 (489)
T ss_pred EEecCChh-------------hCCHHHhCCCcCCeEEEe-CCcCHHHHHHHHHHHHhh----c-----------------
Confidence 99999875 79999997 99999987 666655544444332221 0
Q ss_pred hhhhcccCCCCCCCHHHHHHHHHHHhhcCCCc-CChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhh
Q 002353 724 IQVADREIDPEILPQDLLKKYITYAKLNVFPR-LHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMR 802 (932)
Q Consensus 724 ~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~-Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~ 802 (932)
.|. .++...+.|.+. +-..|.++|+.+++-|..+|-..
T Consensus 409 -----------------------------~~~~~~~~dl~~La~~------------T~GfSGAdI~~lv~eA~~~A~~~ 447 (489)
T CHL00195 409 -----------------------------RPKSWKKYDIKKLSKL------------SNKFSGAEIEQSIIEAMYIAFYE 447 (489)
T ss_pred -----------------------------CCCcccccCHHHHHhh------------cCCCCHHHHHHHHHHHHHHHHHc
Confidence 111 111112223322 33468899999999888777665
Q ss_pred CCCCcCHHHHHHHHHHHHh
Q 002353 803 LRQHVTQEDVNMAIRVLLD 821 (932)
Q Consensus 803 lr~~Vt~~Dv~~AI~l~~~ 821 (932)
. ..++.+|+..|+.-+.-
T Consensus 448 ~-~~lt~~dl~~a~~~~~P 465 (489)
T CHL00195 448 K-REFTTDDILLALKQFIP 465 (489)
T ss_pred C-CCcCHHHHHHHHHhcCC
Confidence 4 45899999998776543
No 72
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.28 E-value=1e-10 Score=135.56 Aligned_cols=181 Identities=20% Similarity=0.272 Sum_probs=106.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhcc-CceeccCCCeeeeccccccCcch
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEG-GALVLADRGICLIDEFDKMNDQD 615 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~-Gal~lAd~GIl~IDE~dkm~~~~ 615 (932)
|+||+||||||||++|+.+++.....+........ +. ... ..+.-.. .......++|++|||++.|+...
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--~~--~~i-----r~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~ 108 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--GV--KDL-----REVIEEARQRRSAGRRTILFIDEIHRFNKAQ 108 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--cH--HHH-----HHHHHHHHHhhhcCCceEEEEechhhhCHHH
Confidence 89999999999999999999987655443211100 00 000 0000000 00112256799999999999999
Q ss_pred hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHH
Q 002353 616 RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLA 695 (932)
Q Consensus 616 ~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La 695 (932)
+..|+..|+.+.+ .+|++++... ...+.++|+|||. ++.+. .++.+.-..
T Consensus 109 q~~LL~~le~~~i---------------ilI~att~n~-----------~~~l~~aL~SR~~-~~~~~-~ls~e~i~~-- 158 (413)
T PRK13342 109 QDALLPHVEDGTI---------------TLIGATTENP-----------SFEVNPALLSRAQ-VFELK-PLSEEDIEQ-- 158 (413)
T ss_pred HHHHHHHhhcCcE---------------EEEEeCCCCh-----------hhhccHHHhccce-eeEeC-CCCHHHHHH--
Confidence 9999999986543 3455553321 1167899999994 44441 111111111
Q ss_pred HHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcc
Q 002353 696 KFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRES 775 (932)
Q Consensus 696 ~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~ 775 (932)
.|++.+.-....+ ..+++++.+.|.++
T Consensus 159 --------------------------------------------lL~~~l~~~~~~~-i~i~~~al~~l~~~-------- 185 (413)
T PRK13342 159 --------------------------------------------LLKRALEDKERGL-VELDDEALDALARL-------- 185 (413)
T ss_pred --------------------------------------------HHHHHHHHhhcCC-CCCCHHHHHHHHHh--------
Confidence 1222111100011 25677777777664
Q ss_pred cCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 002353 776 SHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVL 819 (932)
Q Consensus 776 ~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~ 819 (932)
. ++++|.+.+++..+... ...|+.+++..++...
T Consensus 186 ----s-~Gd~R~aln~Le~~~~~-----~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 186 ----A-NGDARRALNLLELAALG-----VDSITLELLEEALQKR 219 (413)
T ss_pred ----C-CCCHHHHHHHHHHHHHc-----cCCCCHHHHHHHHhhh
Confidence 2 46888888888765443 6679999998887654
No 73
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.27 E-value=4.8e-11 Score=129.86 Aligned_cols=159 Identities=21% Similarity=0.371 Sum_probs=93.7
Q ss_pred cCHHHHHHHHHHhcChhhHHHHHHhhcccccChHHH--HHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHH
Q 002353 475 LTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDI--KTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFL 552 (932)
Q Consensus 475 lt~~d~~~i~~l~~~~~i~~~l~~siap~I~G~~~v--K~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~La 552 (932)
++.++...+ -++..+-+++----.-..+|++.+ -.+++..++-.. .++ .++|+||||||||+||
T Consensus 114 l~~~e~R~~---~qh~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~--~ip---------SmIlWGppG~GKTtlA 179 (554)
T KOG2028|consen 114 LAAEEIRQM---LQHKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQN--RIP---------SMILWGPPGTGKTTLA 179 (554)
T ss_pred hhhHHHHHH---hccCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcC--CCC---------ceEEecCCCCchHHHH
Confidence 555554433 233333333332233345676664 246666666432 111 6899999999999999
Q ss_pred HHHHHhCCCcEEecCCCcccccccceeecCcc-cchhhhccC-ceeccCCCeeeeccccccCcchhhhHHHHHhhceeee
Q 002353 553 KYVEKTGQRAVYTTGKGASAVGLTAAVHKDPV-TREWTLEGG-ALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISI 630 (932)
Q Consensus 553 k~va~~~~r~v~~~g~~ss~~gLta~v~kd~~-~g~~~le~G-al~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi 630 (932)
+.+++.+...-|- .+.+.|+..+... -+.+.-... ......+-|+|||||.+++..+|..++-..|.|.|++
T Consensus 180 rlia~tsk~~Syr------fvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~l 253 (554)
T KOG2028|consen 180 RLIASTSKKHSYR------FVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITL 253 (554)
T ss_pred HHHHhhcCCCceE------EEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEE
Confidence 9999987654221 1112111110000 000000000 1112245699999999999999999999999888654
Q ss_pred eccceeEeeccceEEEeee--CCCCCccCCCCCcccccCCChhhhccccEEEE
Q 002353 631 SKAGIVTSLQARCSVIAAA--NPVGGRYDSSKTFSENVELTDPIISRFDVLCV 681 (932)
Q Consensus 631 ~kagi~~~l~ar~sIIAAa--Np~~Gry~~~~~~~~ni~L~~~LLsRFDli~~ 681 (932)
|+|| ||.+ .|..+|+||+-++.+
T Consensus 254 ---------------IGATTENPSF-------------qln~aLlSRC~VfvL 278 (554)
T KOG2028|consen 254 ---------------IGATTENPSF-------------QLNAALLSRCRVFVL 278 (554)
T ss_pred ---------------EecccCCCcc-------------chhHHHHhccceeEe
Confidence 6766 5533 889999999975544
No 74
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.8e-11 Score=142.62 Aligned_cols=168 Identities=19% Similarity=0.336 Sum_probs=109.8
Q ss_pred hcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCC-Ccccccccce
Q 002353 500 IAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGK-GASAVGLTAA 578 (932)
Q Consensus 500 iap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~-~ss~~gLta~ 578 (932)
+-.+-||+++||+.|+-.+.-+.-++... |. -+||+||||+|||.++|+||+.+.|-+|--.- |.+-+.-.-+
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~q-----Gk-IlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQ-----GK-ILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCC-----Cc-EEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 44567999999999997665443333222 22 59999999999999999999999998875211 1111111111
Q ss_pred eecCcccchhhhccCceecc------CCCeeeeccccccCcchh----hhHHHHHh-hceeeeeccceeEee-ccceEEE
Q 002353 579 VHKDPVTREWTLEGGALVLA------DRGICLIDEFDKMNDQDR----VSIHEAME-QQSISISKAGIVTSL-QARCSVI 646 (932)
Q Consensus 579 v~kd~~~g~~~le~Gal~lA------d~GIl~IDE~dkm~~~~~----~~L~eamE-qq~isi~kagi~~~l-~ar~sII 646 (932)
.++.. ..--||.++.+ .+-+++|||+||+....| .+|+|+|+ .|.-++.---....+ -+++.+|
T Consensus 483 HRRTY----VGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFi 558 (906)
T KOG2004|consen 483 HRRTY----VGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFI 558 (906)
T ss_pred cceee----eccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEE
Confidence 11111 01125655543 667999999999986554 68999997 344333222211111 2578999
Q ss_pred eeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHH
Q 002353 647 AAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEML 694 (932)
Q Consensus 647 AAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~L 694 (932)
||||... .|++|||+|..+|-+ +....++++
T Consensus 559 cTAN~id-------------tIP~pLlDRMEvIel----sGYv~eEKv 589 (906)
T KOG2004|consen 559 CTANVID-------------TIPPPLLDRMEVIEL----SGYVAEEKV 589 (906)
T ss_pred Eeccccc-------------cCChhhhhhhheeec----cCccHHHHH
Confidence 9999976 899999999998765 444455443
No 75
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.24 E-value=1.4e-10 Score=141.66 Aligned_cols=185 Identities=18% Similarity=0.221 Sum_probs=108.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhcc-Ccee-ccCCCeeeeccccccCcc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEG-GALV-LADRGICLIDEFDKMNDQ 614 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~-Gal~-lAd~GIl~IDE~dkm~~~ 614 (932)
|+||+||||||||++|+++++.....+... +.+..++ ++ ...+.-.. ..+. ...++++||||++.++..
T Consensus 54 slLL~GPpGtGKTTLA~aIA~~~~~~f~~l--na~~~~i-----~d--ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~ 124 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIANHTRAHFSSL--NAVLAGV-----KD--LRAEVDRAKERLERHGKRTILFIDEVHRFNKA 124 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcceee--hhhhhhh-----HH--HHHHHHHHHHHhhhcCCceEEEEeChhhCCHH
Confidence 899999999999999999998765433221 1111111 00 00000000 0011 124579999999999999
Q ss_pred hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHH
Q 002353 615 DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEML 694 (932)
Q Consensus 615 ~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~L 694 (932)
.+..|+..|+.+.+ .+|+++++.. ...+.++++||+.+ +.+ ...+.+.-..
T Consensus 125 qQdaLL~~lE~g~I---------------iLI~aTTenp-----------~~~l~~aL~SR~~v-~~l-~pLs~edi~~- 175 (725)
T PRK13341 125 QQDALLPWVENGTI---------------TLIGATTENP-----------YFEVNKALVSRSRL-FRL-KSLSDEDLHQ- 175 (725)
T ss_pred HHHHHHHHhcCceE---------------EEEEecCCCh-----------HhhhhhHhhccccc-eec-CCCCHHHHHH-
Confidence 99999999987643 3566664421 01577899999754 333 2222211111
Q ss_pred HHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhh--cCCCcCChhHHHHHHHHHHHH
Q 002353 695 AKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKL--NVFPRLHDPDMEKLTHVYAEL 771 (932)
Q Consensus 695 a~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~--~~~P~Ls~ea~~~L~~~Y~~l 771 (932)
.|++++. +.+. .-...+++++.+.|.++
T Consensus 176 ---------------------------------------------IL~~~l~~~~~~~g~~~v~I~deaL~~La~~---- 206 (725)
T PRK13341 176 ---------------------------------------------LLKRALQDKERGYGDRKVDLEPEAEKHLVDV---- 206 (725)
T ss_pred ---------------------------------------------HHHHHHHHHHhhcCCcccCCCHHHHHHHHHh----
Confidence 2222222 1110 11347888998888875
Q ss_pred HhcccCCCCcccCHHHHHHHHHHHHHHHHhhCC--CCcCHHHHHHHHH
Q 002353 772 RRESSHGQGVPIAVRHIESMIRMSEAHARMRLR--QHVTQEDVNMAIR 817 (932)
Q Consensus 772 R~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr--~~Vt~~Dv~~AI~ 817 (932)
. ++++|.+.+++..+...+..... ..|+.+++.+++.
T Consensus 207 --------s-~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~ 245 (725)
T PRK13341 207 --------A-NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQ 245 (725)
T ss_pred --------C-CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHH
Confidence 2 68999999999987654432222 2377777777654
No 76
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.24 E-value=8.3e-11 Score=135.24 Aligned_cols=194 Identities=22% Similarity=0.266 Sum_probs=116.2
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceecc---CCCeeeeccccccC
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLA---DRGICLIDEFDKMN 612 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lA---d~GIl~IDE~dkm~ 612 (932)
-+|||+||||||||++|+++++.+...++... + ..+...... .+.+.+. ..+..| ..+|+||||+|.+.
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~-~---~~l~~~~~g---~~~~~i~-~~f~~a~~~~p~IlfiDEiD~l~ 237 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHETNATFIRVV-G---SELVQKFIG---EGARLVR-ELFELAREKAPSIIFIDEIDAIA 237 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHHhCCCEEEee-h---HHHhHhhcc---chHHHHH-HHHHHHHhcCCeEEEEechhhhh
Confidence 38999999999999999999998776654321 1 111110000 0111111 112222 34799999999983
Q ss_pred c-----------chhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEE
Q 002353 613 D-----------QDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVL 679 (932)
Q Consensus 613 ~-----------~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli 679 (932)
. ..+..+.+.+.+-. |. .-..++.||||||... .+++++++ |||..
T Consensus 238 ~~r~~~~~~~~~~~~~~l~~lL~~ld------~~--~~~~~v~VI~aTn~~~-------------~ld~allRpgRfd~~ 296 (389)
T PRK03992 238 AKRTDSGTSGDREVQRTLMQLLAEMD------GF--DPRGNVKIIAATNRID-------------ILDPAILRPGRFDRI 296 (389)
T ss_pred cccccCCCCccHHHHHHHHHHHHhcc------cc--CCCCCEEEEEecCChh-------------hCCHHHcCCccCceE
Confidence 2 22334555443211 11 0123578999999864 68899996 99998
Q ss_pred EEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChh
Q 002353 680 CVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDP 759 (932)
Q Consensus 680 ~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~e 759 (932)
+.+ ..|+...-..+. ..|....+. .+.+
T Consensus 297 I~v-~~P~~~~R~~Il----~~~~~~~~~--------------------------------------------~~~~--- 324 (389)
T PRK03992 297 IEV-PLPDEEGRLEIL----KIHTRKMNL--------------------------------------------ADDV--- 324 (389)
T ss_pred EEE-CCCCHHHHHHHH----HHHhccCCC--------------------------------------------CCcC---
Confidence 877 455544333333 222221110 0001
Q ss_pred HHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhh
Q 002353 760 DMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDS 822 (932)
Q Consensus 760 a~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S 822 (932)
....|... .-..+.+.|+++++.|-..|--+.+..|+.+|+..|+..+..+
T Consensus 325 ~~~~la~~------------t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~ 375 (389)
T PRK03992 325 DLEELAEL------------TEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGK 375 (389)
T ss_pred CHHHHHHH------------cCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhcc
Confidence 11122221 2236889999999999988877788899999999999887655
No 77
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.22 E-value=1.1e-10 Score=143.38 Aligned_cols=183 Identities=14% Similarity=0.138 Sum_probs=111.9
Q ss_pred hhHHHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCc
Q 002353 491 RIGERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGA 570 (932)
Q Consensus 491 ~i~~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~s 570 (932)
.....+...+...|+||+.+++.|.-++.-.. ..+....+..| ++||+||||||||.+|+.+++.+...+.....+.
T Consensus 447 ~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~-~gl~~~~kp~~--~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se 523 (758)
T PRK11034 447 DTLKNLGDRLKMLVFGQDKAIEALTEAIKMSR-AGLGHEHKPVG--SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSE 523 (758)
T ss_pred HHHHHHHHHhcceEeCcHHHHHHHHHHHHHHh-ccccCCCCCcc--eEEEECCCCCCHHHHHHHHHHHhCCCcEEeechh
Confidence 34556778888999999998888876664210 00111111222 7999999999999999999998865544321110
Q ss_pred -----ccccccceeecCcccchhh-hccCcee----ccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeec
Q 002353 571 -----SAVGLTAAVHKDPVTREWT-LEGGALV----LADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQ 640 (932)
Q Consensus 571 -----s~~gLta~v~kd~~~g~~~-le~Gal~----lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ 640 (932)
+...|.++. .|... .+.|.+. ....+|+|||||++++++.+..|+++|++|.++.. .|... --
T Consensus 524 ~~~~~~~~~LiG~~-----~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~-~g~~v-d~ 596 (758)
T PRK11034 524 YMERHTVSRLIGAP-----PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDN-NGRKA-DF 596 (758)
T ss_pred hcccccHHHHcCCC-----CCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecC-CCcee-cC
Confidence 111121110 01000 1123222 23568999999999999999999999999998753 23222 12
Q ss_pred cceEEEeeeCCCCCcc-CCCCCcc-----------cccCCChhhhccccEEEEec
Q 002353 641 ARCSVIAAANPVGGRY-DSSKTFS-----------ENVELTDPIISRFDVLCVVK 683 (932)
Q Consensus 641 ar~sIIAAaNp~~Gry-~~~~~~~-----------~ni~L~~~LLsRFDli~~l~ 683 (932)
.+|.||+|||.-.... .....|. -.-.+.++|+.|+|.++++.
T Consensus 597 rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~ 651 (758)
T PRK11034 597 RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFD 651 (758)
T ss_pred CCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcC
Confidence 3577999999431000 0000010 01358899999999988873
No 78
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.22 E-value=1e-10 Score=145.51 Aligned_cols=173 Identities=18% Similarity=0.275 Sum_probs=100.5
Q ss_pred HHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCc--ccc
Q 002353 496 IIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGA--SAV 573 (932)
Q Consensus 496 l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~s--s~~ 573 (932)
+-..+...+||++.+|+.|.-.+.....+.. .+|. ++||+||||||||++++++++.+.+.++....+. ...
T Consensus 314 ~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~-----~~~~-~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~ 387 (775)
T TIGR00763 314 AKEILDEDHYGLKKVKERILEYLAVQKLRGK-----MKGP-ILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEA 387 (775)
T ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcC-----CCCc-eEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHH
Confidence 3445667799999999998764432211111 1222 7999999999999999999999877665421111 111
Q ss_pred cccceeecCcccchhhhccCc----ee--ccCCCeeeeccccccCcchh----hhHHHHHhhce-eeeec--cceeEeec
Q 002353 574 GLTAAVHKDPVTREWTLEGGA----LV--LADRGICLIDEFDKMNDQDR----VSIHEAMEQQS-ISISK--AGIVTSLQ 640 (932)
Q Consensus 574 gLta~v~kd~~~g~~~le~Ga----l~--lAd~GIl~IDE~dkm~~~~~----~~L~eamEqq~-isi~k--agi~~~l~ 640 (932)
.+.+.. +.. .| ..+|. +. ...+.|++|||||++....+ .+|+++|+..+ -.+.. .+.... -
T Consensus 388 ~i~g~~-~~~-~g---~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d-~ 461 (775)
T TIGR00763 388 EIRGHR-RTY-VG---AMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFD-L 461 (775)
T ss_pred HHcCCC-Cce-eC---CCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceec-c
Confidence 111100 000 00 00111 11 12446999999999987544 67899987421 11111 111111 2
Q ss_pred cceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHH
Q 002353 641 ARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLA 695 (932)
Q Consensus 641 ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La 695 (932)
.++.+|+|||+.. .|+++|++||+++ .+ ..++.+.-..|+
T Consensus 462 s~v~~I~TtN~~~-------------~i~~~L~~R~~vi-~~-~~~~~~e~~~I~ 501 (775)
T TIGR00763 462 SKVIFIATANSID-------------TIPRPLLDRMEVI-EL-SGYTEEEKLEIA 501 (775)
T ss_pred CCEEEEEecCCch-------------hCCHHHhCCeeEE-ec-CCCCHHHHHHHH
Confidence 4678999999854 7899999999754 44 333333333333
No 79
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=7e-11 Score=139.19 Aligned_cols=191 Identities=24% Similarity=0.309 Sum_probs=124.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccc----cceeecCcccchhhhccCceeccCCCeeeeccccccC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGL----TAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMN 612 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gL----ta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~ 612 (932)
+|||+||||||||.|||+++..+..++|.. .++.++.. -++-+++.+.. +.-.| .+|+||||+|...
T Consensus 185 GvlLvGpPGTGKTLLAkAvAgEA~VPFf~i-SGS~FVemfVGvGAsRVRdLF~q-------Akk~a-P~IIFIDEiDAvG 255 (596)
T COG0465 185 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSI-SGSDFVEMFVGVGASRVRDLFEQ-------AKKNA-PCIIFIDEIDAVG 255 (596)
T ss_pred ceeEecCCCCCcHHHHHHHhcccCCCceec-cchhhhhhhcCCCcHHHHHHHHH-------hhccC-CCeEEEehhhhcc
Confidence 799999999999999999999999888875 34444433 33333332211 11122 2799999999987
Q ss_pred cchh-----------hhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEE
Q 002353 613 DQDR-----------VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVL 679 (932)
Q Consensus 613 ~~~~-----------~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli 679 (932)
...- .+|.+.+- ...|.. -+..+-||||||.+. -++++||+ |||-.
T Consensus 256 r~Rg~g~GggnderEQTLNQlLv------EmDGF~--~~~gviviaaTNRpd-------------VlD~ALlRpgRFDRq 314 (596)
T COG0465 256 RQRGAGLGGGNDEREQTLNQLLV------EMDGFG--GNEGVIVIAATNRPD-------------VLDPALLRPGRFDRQ 314 (596)
T ss_pred cccCCCCCCCchHHHHHHHHHHh------hhccCC--CCCceEEEecCCCcc-------------cchHhhcCCCCccee
Confidence 6541 12333221 123322 245678999999975 67899998 99998
Q ss_pred EEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChh
Q 002353 680 CVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDP 759 (932)
Q Consensus 680 ~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~e 759 (932)
+++ +.| |-+..+.|+..|.++.+.. +.++... .||. .|.+
T Consensus 315 I~V-~~P----Di~gRe~IlkvH~~~~~l~------------------------~~Vdl~~------iAr~--tpGf--- 354 (596)
T COG0465 315 ILV-ELP----DIKGREQILKVHAKNKPLA------------------------EDVDLKK------IARG--TPGF--- 354 (596)
T ss_pred eec-CCc----chhhHHHHHHHHhhcCCCC------------------------CcCCHHH------Hhhh--CCCc---
Confidence 887 444 5566677888888766641 0011111 2332 3433
Q ss_pred HHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh
Q 002353 760 DMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLD 821 (932)
Q Consensus 760 a~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~ 821 (932)
+--.|++++.-|--+|-.+.+..|+..|+.+|+.-+..
T Consensus 355 ------------------------sGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~ 392 (596)
T COG0465 355 ------------------------SGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIA 392 (596)
T ss_pred ------------------------ccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhc
Confidence 34457777777777788888888899999888776644
No 80
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.9e-11 Score=131.89 Aligned_cols=165 Identities=22% Similarity=0.271 Sum_probs=99.5
Q ss_pred cccChHHHHHHHhhhhhcC--ccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceee
Q 002353 503 SIYGHEDIKTALALSMFGG--QEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVH 580 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg--~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~ 580 (932)
+|.|.+.+|+.|--|++-. .+....+ -.|..-.||++||||||||+|||+|+..+...+|.. |...|+..++
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~G--irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNV----SsstltSKwR 286 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKG--IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNV----SSSTLTSKWR 286 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhh--cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEe----chhhhhhhhc
Confidence 4668777666554443311 0111111 124445899999999999999999999887666642 2333443333
Q ss_pred cCcccchhhhccCceecc---CCCeeeeccccccCcch------------hhhHHHHHhhceeeeeccceeEeec--cce
Q 002353 581 KDPVTREWTLEGGALVLA---DRGICLIDEFDKMNDQD------------RVSIHEAMEQQSISISKAGIVTSLQ--ARC 643 (932)
Q Consensus 581 kd~~~g~~~le~Gal~lA---d~GIl~IDE~dkm~~~~------------~~~L~eamEqq~isi~kagi~~~l~--ar~ 643 (932)
.+... .+ --.+.+| .-.++||||||.+-... .+.|+--|+ |...++. ..+
T Consensus 287 GeSEK---lv-RlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmD---------G~~~t~e~~k~V 353 (491)
T KOG0738|consen 287 GESEK---LV-RLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMD---------GVQGTLENSKVV 353 (491)
T ss_pred cchHH---HH-HHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhh---------ccccccccceeE
Confidence 22110 00 0112222 23799999999885431 223333333 3333332 358
Q ss_pred EEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHh
Q 002353 644 SVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVID 700 (932)
Q Consensus 644 sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~ 700 (932)
.|+||||-++ +|+++|++||.--+.| ..|+...-+.|.+-.|.
T Consensus 354 mVLAATN~PW-------------diDEAlrRRlEKRIyI-PLP~~~~R~~Li~~~l~ 396 (491)
T KOG0738|consen 354 MVLAATNFPW-------------DIDEALRRRLEKRIYI-PLPDAEARSALIKILLR 396 (491)
T ss_pred EEEeccCCCc-------------chHHHHHHHHhhheee-eCCCHHHHHHHHHHhhc
Confidence 9999999988 9999999999987776 56777766666655444
No 81
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=6.6e-10 Score=135.46 Aligned_cols=205 Identities=16% Similarity=0.151 Sum_probs=121.6
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceE-EEeCCCCchHHHHHHHHHHhCCCcEE----ecCCCcccc----
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINV-LLLGDPGTAKSQFLKYVEKTGQRAVY----TTGKGASAV---- 573 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~Rgdinv-LLvGdPGTGKS~Lak~va~~~~r~v~----~~g~~ss~~---- 573 (932)
.|+||+.++..|.-++..+. +. |. ||+||||||||++|+.+++.+.-... .+|.-.+..
T Consensus 17 dIIGQe~Iv~~LknaI~~~r---l~---------HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~ 84 (944)
T PRK14949 17 QMVGQSHVLHALTNALTQQR---LH---------HAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQ 84 (944)
T ss_pred HhcCcHHHHHHHHHHHHhCC---CC---------eEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhc
Confidence 57799999998877766552 11 54 89999999999999999987643211 111110000
Q ss_pred cccce-eecCcc--cchhh---hccCc---eeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceE
Q 002353 574 GLTAA-VHKDPV--TREWT---LEGGA---LVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCS 644 (932)
Q Consensus 574 gLta~-v~kd~~--~g~~~---le~Ga---l~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~s 644 (932)
+...- +..++. .+... +..-. -..+...|++|||+++|+...+++|+..||.- +..+.
T Consensus 85 g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEP-------------P~~vr 151 (944)
T PRK14949 85 GRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEP-------------PEHVK 151 (944)
T ss_pred CCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcc-------------CCCeE
Confidence 00000 000100 11000 00000 01234569999999999999999999999952 23345
Q ss_pred EEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhh
Q 002353 645 VIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDI 724 (932)
Q Consensus 645 IIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~ 724 (932)
+|.+||... .|.++|+||+- +|.+
T Consensus 152 FILaTTe~~-------------kLl~TIlSRCq-~f~f------------------------------------------ 175 (944)
T PRK14949 152 FLLATTDPQ-------------KLPVTVLSRCL-QFNL------------------------------------------ 175 (944)
T ss_pred EEEECCCch-------------hchHHHHHhhe-EEeC------------------------------------------
Confidence 555555433 57889999983 2332
Q ss_pred hhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCC
Q 002353 725 QVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLR 804 (932)
Q Consensus 725 ~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr 804 (932)
..++.+.+++|+...-..-...+++++.+.|.++ ..+++|...+++..+.+. ..
T Consensus 176 ---------kpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~-------------S~Gd~R~ALnLLdQala~----~~ 229 (944)
T PRK14949 176 ---------KSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKA-------------ANGSMRDALSLTDQAIAF----GG 229 (944)
T ss_pred ---------CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHHHHHh----cC
Confidence 1256667777777533222456788888888875 236788887777544432 23
Q ss_pred CCcCHHHHHH
Q 002353 805 QHVTQEDVNM 814 (932)
Q Consensus 805 ~~Vt~~Dv~~ 814 (932)
..++.++|..
T Consensus 230 ~~It~~~V~~ 239 (944)
T PRK14949 230 GQVMLTQVQT 239 (944)
T ss_pred CcccHHHHHH
Confidence 4566666544
No 82
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.19 E-value=1.1e-10 Score=122.30 Aligned_cols=150 Identities=27% Similarity=0.283 Sum_probs=87.1
Q ss_pred HhhcccccChHHHHHHHhhhh--hcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccc
Q 002353 498 KSIAPSIYGHEDIKTALALSM--FGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGL 575 (932)
Q Consensus 498 ~siap~I~G~~~vK~aillaL--~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gL 575 (932)
+...-.+.||+.+|+..-+-+ +-...+ .+-...-|||++||||||||++||+++..+..+++.. + +..|
T Consensus 117 ~it~ddViGqEeAK~kcrli~~yLenPe~-----Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~v-k---at~l 187 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEYLENPER-----FGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLV-K---ATEL 187 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHHhhChHH-----hcccCcceeEEECCCCccHHHHHHHHhcccCCceEEe-c---hHHH
Confidence 334567899999988654332 221100 1111223999999999999999999999887776653 1 2223
Q ss_pred cceeecCcccchhhhccCceeccCCCeeeeccccccCcchh------------hhHHHHHhhceeeeeccceeEeeccce
Q 002353 576 TAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDR------------VSIHEAMEQQSISISKAGIVTSLQARC 643 (932)
Q Consensus 576 ta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~------------~~L~eamEqq~isi~kagi~~~l~ar~ 643 (932)
.+-.+.+..-....+-.-| ..+.-+|+||||+|.+.-+.+ ++|+.-|+ |++ -+-.+
T Consensus 188 iGehVGdgar~Ihely~rA-~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelD---------gi~--eneGV 255 (368)
T COG1223 188 IGEHVGDGARRIHELYERA-RKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELD---------GIK--ENEGV 255 (368)
T ss_pred HHHHhhhHHHHHHHHHHHH-HhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhcc---------Ccc--cCCce
Confidence 3322222110000000001 122348999999998765432 23443333 222 23445
Q ss_pred EEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEE
Q 002353 644 SVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCV 681 (932)
Q Consensus 644 sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~ 681 (932)
..|||||.+. -|++++.|||.--+-
T Consensus 256 vtIaaTN~p~-------------~LD~aiRsRFEeEIE 280 (368)
T COG1223 256 VTIAATNRPE-------------LLDPAIRSRFEEEIE 280 (368)
T ss_pred EEEeecCChh-------------hcCHHHHhhhhheee
Confidence 6789999875 789999999975444
No 83
>CHL00176 ftsH cell division protein; Validated
Probab=99.19 E-value=3.4e-10 Score=136.73 Aligned_cols=224 Identities=20% Similarity=0.265 Sum_probs=122.5
Q ss_pred cccChHHHHHHHhhhh--hcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceee
Q 002353 503 SIYGHEDIKTALALSM--FGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVH 580 (932)
Q Consensus 503 ~I~G~~~vK~aillaL--~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~ 580 (932)
.|.|.+.+|..+.-.+ +....+...-+ .+-.-+|||+||||||||++|++++..+...++... ++.......+.
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g--~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is-~s~f~~~~~g~- 259 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVG--AKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSIS-GSEFVEMFVGV- 259 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhcc--CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeecc-HHHHHHHhhhh-
Confidence 4677777776554322 11111100001 122337999999999999999999998766655421 11111110000
Q ss_pred cCcccchhhhccCceecc---CCCeeeeccccccCcc-----------hhhhHHHHHhhceeeeeccceeEeeccceEEE
Q 002353 581 KDPVTREWTLEGGALVLA---DRGICLIDEFDKMNDQ-----------DRVSIHEAMEQQSISISKAGIVTSLQARCSVI 646 (932)
Q Consensus 581 kd~~~g~~~le~Gal~lA---d~GIl~IDE~dkm~~~-----------~~~~L~eamEqq~isi~kagi~~~l~ar~sII 646 (932)
+.-.+. ..+..| ..+|+||||||.+... .+..|...+..- .|. .-+.++.||
T Consensus 260 -----~~~~vr-~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~------dg~--~~~~~ViVI 325 (638)
T CHL00176 260 -----GAARVR-DLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEM------DGF--KGNKGVIVI 325 (638)
T ss_pred -----hHHHHH-HHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhh------ccc--cCCCCeeEE
Confidence 000000 011111 2369999999988422 122333433321 111 113467899
Q ss_pred eeeCCCCCccCCCCCcccccCCChhhhc--cccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhh
Q 002353 647 AAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDI 724 (932)
Q Consensus 647 AAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~ 724 (932)
||||... .+++++++ |||..+.+ +.|+...-..+.+ .|....
T Consensus 326 aaTN~~~-------------~LD~ALlRpGRFd~~I~v-~lPd~~~R~~IL~----~~l~~~------------------ 369 (638)
T CHL00176 326 AATNRVD-------------ILDAALLRPGRFDRQITV-SLPDREGRLDILK----VHARNK------------------ 369 (638)
T ss_pred EecCchH-------------hhhhhhhccccCceEEEE-CCCCHHHHHHHHH----HHHhhc------------------
Confidence 9999865 67888987 89998887 5565544333332 222110
Q ss_pred hhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCC
Q 002353 725 QVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLR 804 (932)
Q Consensus 725 ~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr 804 (932)
+..++.....|.+. ....+.++|.++++-|...|.-+.+
T Consensus 370 -----------------------------~~~~d~~l~~lA~~------------t~G~sgaDL~~lvneAal~a~r~~~ 408 (638)
T CHL00176 370 -----------------------------KLSPDVSLELIARR------------TPGFSGADLANLLNEAAILTARRKK 408 (638)
T ss_pred -----------------------------ccchhHHHHHHHhc------------CCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 00111112222211 2225889999999988777766777
Q ss_pred CCcCHHHHHHHHHHHHh
Q 002353 805 QHVTQEDVNMAIRVLLD 821 (932)
Q Consensus 805 ~~Vt~~Dv~~AI~l~~~ 821 (932)
..|+.+|+..|+.-+..
T Consensus 409 ~~It~~dl~~Ai~rv~~ 425 (638)
T CHL00176 409 ATITMKEIDTAIDRVIA 425 (638)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 88999999999876633
No 84
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.19 E-value=7.6e-10 Score=132.66 Aligned_cols=209 Identities=19% Similarity=0.185 Sum_probs=121.2
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEE----ecCC----------
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVY----TTGK---------- 568 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~----~~g~---------- 568 (932)
.|.||+.+++.|.-++-++. + .| -+||+|++|||||++++.+++.+.-... .+|.
T Consensus 17 EVIGQe~Vv~~L~~aL~~gR---L--~H------AyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G 85 (830)
T PRK07003 17 SLVGQEHVVRALTHALDGGR---L--HH------AYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEG 85 (830)
T ss_pred HHcCcHHHHHHHHHHHhcCC---C--Ce------EEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcC
Confidence 46799999998888776652 1 11 3599999999999999999997642110 0110
Q ss_pred -CcccccccceeecCcccchhhhcc--CceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEE
Q 002353 569 -GASAVGLTAAVHKDPVTREWTLEG--GALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSV 645 (932)
Q Consensus 569 -~ss~~gLta~v~kd~~~g~~~le~--Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sI 645 (932)
......+.++..+....-...++. .........|++|||++.|+...++.|+..||+- +..+.|
T Consensus 86 ~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEP-------------P~~v~F 152 (830)
T PRK07003 86 RFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEP-------------PPHVKF 152 (830)
T ss_pred CCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhc-------------CCCeEE
Confidence 000111111100000000000110 0011234569999999999999999999999963 234566
Q ss_pred EeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhh
Q 002353 646 IAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQ 725 (932)
Q Consensus 646 IAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~ 725 (932)
|.+||... .|..+|+|||-. |.+.
T Consensus 153 ILaTtd~~-------------KIp~TIrSRCq~-f~Fk------------------------------------------ 176 (830)
T PRK07003 153 ILATTDPQ-------------KIPVTVLSRCLQ-FNLK------------------------------------------ 176 (830)
T ss_pred EEEECChh-------------hccchhhhheEE-EecC------------------------------------------
Confidence 77776543 688999999943 3321
Q ss_pred hhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCC
Q 002353 726 VADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQ 805 (932)
Q Consensus 726 ~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~ 805 (932)
.++.+.+.+++...-..-...+++++...|.+. ..+++|...+++..+.+++ ..
T Consensus 177 ---------~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~-------------A~GsmRdALsLLdQAia~~----~~ 230 (830)
T PRK07003 177 ---------QMPAGHIVSHLERILGEERIAFEPQALRLLARA-------------AQGSMRDALSLTDQAIAYS----AN 230 (830)
T ss_pred ---------CcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHHHHHhc----cC
Confidence 123333443333221112335677777777764 2357888888776555443 34
Q ss_pred CcCHHHHHHHHH
Q 002353 806 HVTQEDVNMAIR 817 (932)
Q Consensus 806 ~Vt~~Dv~~AI~ 817 (932)
.|+.++|...+.
T Consensus 231 ~It~~~V~~~LG 242 (830)
T PRK07003 231 EVTETAVSGMLG 242 (830)
T ss_pred CcCHHHHHHHhC
Confidence 678877765543
No 85
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.17 E-value=2.5e-10 Score=141.28 Aligned_cols=194 Identities=15% Similarity=0.195 Sum_probs=116.7
Q ss_pred HHHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCc--
Q 002353 493 GERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGA-- 570 (932)
Q Consensus 493 ~~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~s-- 570 (932)
+..+...+-..|+||+.++..+.-++.... .......+..| ++||+||||||||.+|+++++.+...+.....+.
T Consensus 445 l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~-~g~~~~~~p~~--~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~ 521 (731)
T TIGR02639 445 LKNLEKNLKAKIFGQDEAIDSLVSSIKRSR-AGLGNPNKPVG--SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYM 521 (731)
T ss_pred HHHHHHHHhcceeCcHHHHHHHHHHHHHHh-cCCCCCCCCce--eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhh
Confidence 446777888899999999998887665321 01111112222 6899999999999999999999865544321100
Q ss_pred ---ccccccceeecCcccchhhh-ccC----ceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccc
Q 002353 571 ---SAVGLTAAVHKDPVTREWTL-EGG----ALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQAR 642 (932)
Q Consensus 571 ---s~~gLta~v~kd~~~g~~~l-e~G----al~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar 642 (932)
+...+.++. .|.... +.| ++.....+|++||||+++.++.+..|+++|++|.++-. .|.... -.+
T Consensus 522 ~~~~~~~lig~~-----~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~-~g~~vd-~~~ 594 (731)
T TIGR02639 522 EKHTVSRLIGAP-----PGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDN-NGRKAD-FRN 594 (731)
T ss_pred hcccHHHHhcCC-----CCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecC-CCcccC-CCC
Confidence 111111111 010000 111 22234568999999999999999999999999998643 232222 235
Q ss_pred eEEEeeeCCCCCccCC-CCCcc-----------cccCCChhhhccccEEEEecCCCChhHhHHHHHH
Q 002353 643 CSVIAAANPVGGRYDS-SKTFS-----------ENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKF 697 (932)
Q Consensus 643 ~sIIAAaNp~~Gry~~-~~~~~-----------~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~ 697 (932)
+.||+|+|.-...... ...|. -.-.+.++|++|||-++++.. .+.+.-.+|++.
T Consensus 595 ~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~p-Ls~e~l~~Iv~~ 660 (731)
T TIGR02639 595 VILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNP-LSEEVLEKIVQK 660 (731)
T ss_pred CEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCC-CCHHHHHHHHHH
Confidence 7899999973211100 00110 012478899999998888743 333333444433
No 86
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=6.5e-10 Score=130.85 Aligned_cols=166 Identities=21% Similarity=0.233 Sum_probs=99.9
Q ss_pred ccChHHHHHHHhhhhhcCc--cccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeec
Q 002353 504 IYGHEDIKTALALSMFGGQ--EKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHK 581 (932)
Q Consensus 504 I~G~~~vK~aillaL~gg~--~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~k 581 (932)
|.|.+.+|.-|+-.+--.- +.-...|.+.|. .|||+||||||||.+||+||-.+.-.++.. +|.....+ .+.
T Consensus 674 VGGLeevK~eIldTIqlPL~hpeLfssglrkRS--GILLYGPPGTGKTLlAKAVATEcsL~FlSV-KGPELLNM---YVG 747 (953)
T KOG0736|consen 674 VGGLEEVKTEILDTIQLPLKHPELFSSGLRKRS--GILLYGPPGTGKTLLAKAVATECSLNFLSV-KGPELLNM---YVG 747 (953)
T ss_pred ccCHHHHHHHHHHHhcCcccChhhhhccccccc--eeEEECCCCCchHHHHHHHHhhceeeEEee-cCHHHHHH---Hhc
Confidence 4689999999985432100 001122343344 899999999999999999998876665542 33322211 111
Q ss_pred CcccchhhhccCceeccCCCeeeeccccccCcchh-------------hhHHHHHhhceeeeeccceeEeeccceEEEee
Q 002353 582 DPVTREWTLEGGALVLADRGICLIDEFDKMNDQDR-------------VSIHEAMEQQSISISKAGIVTSLQARCSVIAA 648 (932)
Q Consensus 582 d~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~-------------~~L~eamEqq~isi~kagi~~~l~ar~sIIAA 648 (932)
....+....-..| -.|.-+|+|+||+|.+.+..- ..|+.-| .|+...-...+.||+|
T Consensus 748 qSE~NVR~VFerA-R~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAEL---------Dgls~~~s~~VFViGA 817 (953)
T KOG0736|consen 748 QSEENVREVFERA-RSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAEL---------DGLSDSSSQDVFVIGA 817 (953)
T ss_pred chHHHHHHHHHHh-hccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHh---------hcccCCCCCceEEEec
Confidence 1100000000001 134558999999999977521 1222222 3444334567899999
Q ss_pred eCCCCCccCCCCCcccccCCChhhhc--cccEEEEecCCCChhHhHHHHHHH
Q 002353 649 ANPVGGRYDSSKTFSENVELTDPIIS--RFDVLCVVKDVVDPVVDEMLAKFV 698 (932)
Q Consensus 649 aNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~~l~D~~d~~~D~~La~~v 698 (932)
||++. -|+++||+ |||-++.+--..+.+...++.+.+
T Consensus 818 TNRPD-------------LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~Al 856 (953)
T KOG0736|consen 818 TNRPD-------------LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEAL 856 (953)
T ss_pred CCCcc-------------ccChhhcCCCccceeEEecCCccHHHHHHHHHHH
Confidence 99976 68999999 999999986555555545544443
No 87
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.16 E-value=3.1e-10 Score=134.65 Aligned_cols=189 Identities=23% Similarity=0.297 Sum_probs=108.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceec---cCCCeeeeccccccCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVL---ADRGICLIDEFDKMND 613 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~l---Ad~GIl~IDE~dkm~~ 613 (932)
++||+||||||||+++++++..+...++... ++.......+.. .-.+. ..+.. ...+|+||||||.+..
T Consensus 90 giLL~GppGtGKT~la~alA~~~~~~~~~i~-~~~~~~~~~g~~------~~~l~-~~f~~a~~~~p~Il~iDEid~l~~ 161 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS-GSDFVEMFVGVG------ASRVR-DLFEQAKKNAPCIIFIDEIDAVGR 161 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCeeecc-HHHHHHHHhccc------HHHHH-HHHHHHHhcCCCEEEEechhhhhh
Confidence 7999999999999999999998876655421 111111100000 00000 01111 1347999999999864
Q ss_pred chhh--------------hHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--ccc
Q 002353 614 QDRV--------------SIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFD 677 (932)
Q Consensus 614 ~~~~--------------~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFD 677 (932)
.... .|+..|+ |. .-+..+.||||||++. .|++++++ |||
T Consensus 162 ~r~~~~~~~~~~~~~~~~~lL~~~d---------~~--~~~~~v~vI~aTn~~~-------------~ld~al~r~gRfd 217 (495)
T TIGR01241 162 QRGAGLGGGNDEREQTLNQLLVEMD---------GF--GTNTGVIVIAATNRPD-------------VLDPALLRPGRFD 217 (495)
T ss_pred ccccCcCCccHHHHHHHHHHHhhhc---------cc--cCCCCeEEEEecCChh-------------hcCHHHhcCCcce
Confidence 3221 1222221 10 1123578999999875 78999997 999
Q ss_pred EEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCC
Q 002353 678 VLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLH 757 (932)
Q Consensus 678 li~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls 757 (932)
..+.+ ..|+......|.+..+. ..+. . +
T Consensus 218 ~~i~i-~~Pd~~~R~~il~~~l~----~~~~--------------------------------------------~---~ 245 (495)
T TIGR01241 218 RQVVV-DLPDIKGREEILKVHAK----NKKL--------------------------------------------A---P 245 (495)
T ss_pred EEEEc-CCCCHHHHHHHHHHHHh----cCCC--------------------------------------------C---c
Confidence 98877 45655444444333221 1110 0 0
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh
Q 002353 758 DPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLD 821 (932)
Q Consensus 758 ~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~ 821 (932)
+.....|.+. ....+.+.|+++++-|...|.-+-+..|+.+|+..|+.....
T Consensus 246 ~~~l~~la~~------------t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 246 DVDLKAVARR------------TPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIA 297 (495)
T ss_pred chhHHHHHHh------------CCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 0011111111 223577888888887766665566778999999998876643
No 88
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=1.7e-09 Score=126.76 Aligned_cols=211 Identities=15% Similarity=0.201 Sum_probs=120.2
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEe----cC----------
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYT----TG---------- 567 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~----~g---------- 567 (932)
..|.||+.+++.|.-++..+. + .| ++||+||||||||++|+.+++.+.-.-.. ++
T Consensus 14 ~divGq~~i~~~L~~~i~~~~---l--~~------~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~ 82 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS---I--SH------AYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDE 82 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC---C--Ce------EEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhc
Confidence 357899999888877766552 1 11 48999999999999999999875421100 10
Q ss_pred -CCcccccccceeecCccc-chhhhccC-ceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceE
Q 002353 568 -KGASAVGLTAAVHKDPVT-REWTLEGG-ALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCS 644 (932)
Q Consensus 568 -~~ss~~gLta~v~kd~~~-g~~~le~G-al~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~s 644 (932)
.......+.++..+.... ....-... .-..+...|++|||++.|....+..|+..|+.. +..+.
T Consensus 83 g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p-------------~~~vv 149 (472)
T PRK14962 83 GTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEP-------------PSHVV 149 (472)
T ss_pred CCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhC-------------CCcEE
Confidence 001111122211100000 00000000 012346679999999999988889999999852 12234
Q ss_pred EE-eeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhh
Q 002353 645 VI-AAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEED 723 (932)
Q Consensus 645 II-AAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~ 723 (932)
+| +++||. .+.+++.|||.++-+ .
T Consensus 150 ~Ilattn~~--------------kl~~~L~SR~~vv~f-~---------------------------------------- 174 (472)
T PRK14962 150 FVLATTNLE--------------KVPPTIISRCQVIEF-R---------------------------------------- 174 (472)
T ss_pred EEEEeCChH--------------hhhHHHhcCcEEEEE-C----------------------------------------
Confidence 44 444432 578899999964332 1
Q ss_pred hhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhC
Q 002353 724 IQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRL 803 (932)
Q Consensus 724 ~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~l 803 (932)
.++.+.+.+++..+-..-.-.++++|.+.|.+.. .+++|.+.+++..+.+.+
T Consensus 175 -----------~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s-------------~GdlR~aln~Le~l~~~~---- 226 (472)
T PRK14962 175 -----------NISDELIIKRLQEVAEAEGIEIDREALSFIAKRA-------------SGGLRDALTMLEQVWKFS---- 226 (472)
T ss_pred -----------CccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-------------CCCHHHHHHHHHHHHHhc----
Confidence 1223334444442221123367888888887641 246776666665433322
Q ss_pred CCCcCHHHHHHHHHHH
Q 002353 804 RQHVTQEDVNMAIRVL 819 (932)
Q Consensus 804 r~~Vt~~Dv~~AI~l~ 819 (932)
...||.+||..++...
T Consensus 227 ~~~It~e~V~~~l~~~ 242 (472)
T PRK14962 227 EGKITLETVHEALGLI 242 (472)
T ss_pred CCCCCHHHHHHHHcCC
Confidence 2348999988876544
No 89
>PLN03025 replication factor C subunit; Provisional
Probab=99.15 E-value=2e-09 Score=120.77 Aligned_cols=133 Identities=23% Similarity=0.300 Sum_probs=79.4
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecC
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKD 582 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd 582 (932)
.+.||+.+...|.-.+.++. . .|+||+||||||||++|+++++.+....+ ......+.++..+.
T Consensus 14 ~~~g~~~~~~~L~~~~~~~~------~------~~lll~Gp~G~GKTtla~~la~~l~~~~~----~~~~~eln~sd~~~ 77 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDGN------M------PNLILSGPPGTGKTTSILALAHELLGPNY----KEAVLELNASDDRG 77 (319)
T ss_pred HhcCcHHHHHHHHHHHhcCC------C------ceEEEECCCCCCHHHHHHHHHHHHhcccC----ccceeeeccccccc
Confidence 35688888777654443331 1 18999999999999999999987522111 01111122211110
Q ss_pred cc-----cchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccC
Q 002353 583 PV-----TREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYD 657 (932)
Q Consensus 583 ~~-----~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~ 657 (932)
.. ...+......+......|++|||++.|+...+.+|+..||.- +..+.+|.++|...
T Consensus 78 ~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~-------------~~~t~~il~~n~~~---- 140 (319)
T PLN03025 78 IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIY-------------SNTTRFALACNTSS---- 140 (319)
T ss_pred HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcc-------------cCCceEEEEeCCcc----
Confidence 00 000000000111123569999999999999999999999831 22345777888643
Q ss_pred CCCCcccccCCChhhhcccc
Q 002353 658 SSKTFSENVELTDPIISRFD 677 (932)
Q Consensus 658 ~~~~~~~ni~L~~~LLsRFD 677 (932)
.+.++|.||+.
T Consensus 141 ---------~i~~~L~SRc~ 151 (319)
T PLN03025 141 ---------KIIEPIQSRCA 151 (319)
T ss_pred ---------ccchhHHHhhh
Confidence 56788999984
No 90
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.15 E-value=5.3e-10 Score=128.49 Aligned_cols=192 Identities=18% Similarity=0.253 Sum_probs=114.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceec---cCCCeeeeccccccCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVL---ADRGICLIDEFDKMND 613 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~l---Ad~GIl~IDE~dkm~~ 613 (932)
++||+||||||||++++++++.+...++... ++. +...... .+...+. ..+.. ...+|+||||+|.+..
T Consensus 181 gvLL~GppGTGKT~LAkalA~~l~~~fi~i~-~s~---l~~k~~g---e~~~~lr-~lf~~A~~~~P~ILfIDEID~i~~ 252 (398)
T PTZ00454 181 GVLLYGPPGTGKTMLAKAVAHHTTATFIRVV-GSE---FVQKYLG---EGPRMVR-DVFRLARENAPSIIFIDEVDSIAT 252 (398)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCCEEEEe-hHH---HHHHhcc---hhHHHHH-HHHHHHHhcCCeEEEEECHhhhcc
Confidence 8999999999999999999998766554321 111 1000000 0000000 00111 2347999999998742
Q ss_pred c-----------hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEEE
Q 002353 614 Q-----------DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLC 680 (932)
Q Consensus 614 ~-----------~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~ 680 (932)
. .+..+.+.+.+- .|. .-..++.||+|||... .+++++++ |||..+
T Consensus 253 ~r~~~~~~~d~~~~r~l~~LL~~l------d~~--~~~~~v~VI~aTN~~d-------------~LDpAllR~GRfd~~I 311 (398)
T PTZ00454 253 KRFDAQTGADREVQRILLELLNQM------DGF--DQTTNVKVIMATNRAD-------------TLDPALLRPGRLDRKI 311 (398)
T ss_pred ccccccCCccHHHHHHHHHHHHHh------hcc--CCCCCEEEEEecCCch-------------hCCHHHcCCCcccEEE
Confidence 2 122344444321 111 1123578999999865 78999997 999998
Q ss_pred EecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhH
Q 002353 681 VVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPD 760 (932)
Q Consensus 681 ~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea 760 (932)
.+ +.|+...-..|.+.++. ..+ +.+.+ .
T Consensus 312 ~~-~~P~~~~R~~Il~~~~~----~~~--------------------------------------------l~~dv---d 339 (398)
T PTZ00454 312 EF-PLPDRRQKRLIFQTITS----KMN--------------------------------------------LSEEV---D 339 (398)
T ss_pred Ee-CCcCHHHHHHHHHHHHh----cCC--------------------------------------------CCccc---C
Confidence 77 55665544444333221 111 01100 0
Q ss_pred HHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh
Q 002353 761 MEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLD 821 (932)
Q Consensus 761 ~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~ 821 (932)
.+.|... .-..|.+.|.+|++.|...|--+.+..|+.+|+..|+..+..
T Consensus 340 ~~~la~~------------t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 340 LEDFVSR------------PEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred HHHHHHH------------cCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHh
Confidence 1111111 224688999999999998888888899999999999877543
No 91
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=2.3e-09 Score=124.35 Aligned_cols=210 Identities=15% Similarity=0.183 Sum_probs=127.3
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcE----EecCCCcc------
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAV----YTTGKGAS------ 571 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v----~~~g~~ss------ 571 (932)
..+.||+.+...|.-++..+. + +| .+||+||||||||++|+.+++.+.-.. ..+|.-.+
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r---i--~h------a~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~ 86 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK---I--GH------AYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITK 86 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC---C--Ce------EEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHc
Confidence 357899999988777776652 1 12 489999999999999999999764321 11111111
Q ss_pred -----cccccceeecCcccchhhhccCcee---ccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccce
Q 002353 572 -----AVGLTAAVHKDPVTREWTLEGGALV---LADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARC 643 (932)
Q Consensus 572 -----~~gLta~v~kd~~~g~~~le~Gal~---lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~ 643 (932)
...+.++.... ......+...... .....|++|||++.|+...+++|+..||+- +..+
T Consensus 87 g~~~dviEIdaas~~g-Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEP-------------p~~v 152 (484)
T PRK14956 87 GISSDVLEIDAASNRG-IENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEP-------------PAHI 152 (484)
T ss_pred cCCccceeechhhccc-HHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcC-------------CCce
Confidence 11111111000 0000000000011 112349999999999999999999999852 2344
Q ss_pred EEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhh
Q 002353 644 SVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEED 723 (932)
Q Consensus 644 sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~ 723 (932)
.+|.|||... .|.++++||+-.+.+-
T Consensus 153 iFILaTte~~-------------kI~~TI~SRCq~~~f~----------------------------------------- 178 (484)
T PRK14956 153 VFILATTEFH-------------KIPETILSRCQDFIFK----------------------------------------- 178 (484)
T ss_pred EEEeecCChh-------------hccHHHHhhhheeeec-----------------------------------------
Confidence 5566665433 7899999998644331
Q ss_pred hhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhC
Q 002353 724 IQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRL 803 (932)
Q Consensus 724 ~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~l 803 (932)
.++.+.+.+|+...-..-.-.++++|...|.++ ..+++|...+++..+.+.+
T Consensus 179 -----------~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~-------------S~Gd~RdAL~lLeq~i~~~---- 230 (484)
T PRK14956 179 -----------KVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKK-------------GDGSVRDMLSFMEQAIVFT---- 230 (484)
T ss_pred -----------CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------cCChHHHHHHHHHHHHHhC----
Confidence 134445555555332222346788888888875 2367899888886654432
Q ss_pred CCCcCHHHHHHHHHH
Q 002353 804 RQHVTQEDVNMAIRV 818 (932)
Q Consensus 804 r~~Vt~~Dv~~AI~l 818 (932)
...|+.++|..++.+
T Consensus 231 ~~~it~~~V~~~lg~ 245 (484)
T PRK14956 231 DSKLTGVKIRKMIGY 245 (484)
T ss_pred CCCcCHHHHHHHhCC
Confidence 346899988776543
No 92
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=2.1e-09 Score=122.69 Aligned_cols=208 Identities=15% Similarity=0.214 Sum_probs=121.7
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcE-E---ecCCC---------
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAV-Y---TTGKG--------- 569 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v-~---~~g~~--------- 569 (932)
.|.||+.+++.+.-++..+. . .| .+||+||||||||++|+.+++...-.. + .+|.-
T Consensus 17 ~iiGq~~~~~~l~~~~~~~~---~--~h------~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~ 85 (363)
T PRK14961 17 DIIGQKHIVTAISNGLSLGR---I--HH------AWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKG 85 (363)
T ss_pred hccChHHHHHHHHHHHHcCC---C--Ce------EEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcC
Confidence 57899999999887776652 1 12 469999999999999999998764110 0 01110
Q ss_pred --cccccccceeecCcccchhhh-cc-C-ceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceE
Q 002353 570 --ASAVGLTAAVHKDPVTREWTL-EG-G-ALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCS 644 (932)
Q Consensus 570 --ss~~gLta~v~kd~~~g~~~l-e~-G-al~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~s 644 (932)
.....+.++. +........+ +. . .-..+...|++|||+++|+...+.+|+..||.- +..+.
T Consensus 86 ~~~d~~~~~~~~-~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~-------------~~~~~ 151 (363)
T PRK14961 86 LCLDLIEIDAAS-RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PQHIK 151 (363)
T ss_pred CCCceEEecccc-cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcC-------------CCCeE
Confidence 0000011110 0000000000 00 0 001234569999999999998888999999852 22344
Q ss_pred EEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhh
Q 002353 645 VIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDI 724 (932)
Q Consensus 645 IIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~ 724 (932)
+|.+||... .+.+++.||+- .+.+
T Consensus 152 fIl~t~~~~-------------~l~~tI~SRc~-~~~~------------------------------------------ 175 (363)
T PRK14961 152 FILATTDVE-------------KIPKTILSRCL-QFKL------------------------------------------ 175 (363)
T ss_pred EEEEcCChH-------------hhhHHHHhhce-EEeC------------------------------------------
Confidence 555554322 57889999983 3332
Q ss_pred hhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCC
Q 002353 725 QVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLR 804 (932)
Q Consensus 725 ~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr 804 (932)
.+++.+.+..|+...-+.-...+++++.+.|..+ ..+++|...+++..+.+. .+
T Consensus 176 ---------~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~-------------s~G~~R~al~~l~~~~~~----~~ 229 (363)
T PRK14961 176 ---------KIISEEKIFNFLKYILIKESIDTDEYALKLIAYH-------------AHGSMRDALNLLEHAINL----GK 229 (363)
T ss_pred ---------CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHHHHHh----cC
Confidence 1134445555555322222345788888887765 135788877776554332 36
Q ss_pred CCcCHHHHHHHHH
Q 002353 805 QHVTQEDVNMAIR 817 (932)
Q Consensus 805 ~~Vt~~Dv~~AI~ 817 (932)
..|+.++|..++.
T Consensus 230 ~~It~~~v~~~l~ 242 (363)
T PRK14961 230 GNINIKNVTDMLG 242 (363)
T ss_pred CCCCHHHHHHHHC
Confidence 7899999988764
No 93
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.14 E-value=4.5e-10 Score=128.25 Aligned_cols=190 Identities=20% Similarity=0.231 Sum_probs=111.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceecc---CCCeeeeccccccCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLA---DRGICLIDEFDKMND 613 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lA---d~GIl~IDE~dkm~~ 613 (932)
++||+||||||||++++++++.+...++... ...+...... .+.+.+. ..+..+ ..+|+||||+|.+..
T Consensus 158 gvLL~GppGtGKT~lakaia~~l~~~~~~v~----~~~l~~~~~g---~~~~~i~-~~f~~a~~~~p~il~iDEiD~l~~ 229 (364)
T TIGR01242 158 GVLLYGPPGTGKTLLAKAVAHETNATFIRVV----GSELVRKYIG---EGARLVR-EIFELAKEKAPSIIFIDEIDAIAA 229 (364)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCCEEecc----hHHHHHHhhh---HHHHHHH-HHHHHHHhcCCcEEEhhhhhhhcc
Confidence 7999999999999999999998876654321 1111110000 0111110 111122 346999999999843
Q ss_pred c-----------hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEEE
Q 002353 614 Q-----------DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLC 680 (932)
Q Consensus 614 ~-----------~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~ 680 (932)
. .+..+.+.+.+- .+. .-..++.||+|||... .+++++++ |||..+
T Consensus 230 ~~~~~~~~~~~~~~~~l~~ll~~l------d~~--~~~~~v~vI~ttn~~~-------------~ld~al~r~grfd~~i 288 (364)
T TIGR01242 230 KRTDSGTSGDREVQRTLMQLLAEL------DGF--DPRGNVKVIAATNRPD-------------ILDPALLRPGRFDRII 288 (364)
T ss_pred ccccCCCCccHHHHHHHHHHHHHh------hCC--CCCCCEEEEEecCChh-------------hCChhhcCcccCceEE
Confidence 2 233444444321 110 1123678999999864 68888886 999887
Q ss_pred EecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhH
Q 002353 681 VVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPD 760 (932)
Q Consensus 681 ~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea 760 (932)
.+ ..|+...-..|. ..|....+ +.+.++
T Consensus 289 ~v-~~P~~~~r~~Il----~~~~~~~~--------------------------------------------l~~~~~--- 316 (364)
T TIGR01242 289 EV-PLPDFEGRLEIL----KIHTRKMK--------------------------------------------LAEDVD--- 316 (364)
T ss_pred Ee-CCcCHHHHHHHH----HHHHhcCC--------------------------------------------CCccCC---
Confidence 76 445444333332 22211111 001111
Q ss_pred HHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 002353 761 MEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVL 819 (932)
Q Consensus 761 ~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~ 819 (932)
...|... .-..+.+.|.++++.|..+|-.+.+..|+.+|+..|+.-+
T Consensus 317 ~~~la~~------------t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 317 LEAIAKM------------TEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHHH------------cCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 1122221 1235789999999999999988899999999999998653
No 94
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=5.6e-11 Score=130.72 Aligned_cols=172 Identities=27% Similarity=0.325 Sum_probs=115.6
Q ss_pred cccChHHHHHHHhhhhhcC--ccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceee
Q 002353 503 SIYGHEDIKTALALSMFGG--QEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVH 580 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg--~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~ 580 (932)
+|.|.+.+|.++.-..+=. .+.....+.-.+..-+|||+||||||||++|+++++.+.-.+. ++..+.
T Consensus 93 DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fI---------nv~~s~- 162 (386)
T KOG0737|consen 93 DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFI---------NVSVSN- 162 (386)
T ss_pred hccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcc---------eeeccc-
Confidence 3778888887765433211 1112223344567779999999999999999999998754332 222211
Q ss_pred cCcccchhhhccCcee-----cc---CCCeeeeccccccCcchhhhHHHHHhh--ceeeeeccceeEeeccceEEEeeeC
Q 002353 581 KDPVTREWTLEGGALV-----LA---DRGICLIDEFDKMNDQDRVSIHEAMEQ--QSISISKAGIVTSLQARCSVIAAAN 650 (932)
Q Consensus 581 kd~~~g~~~le~Gal~-----lA---d~GIl~IDE~dkm~~~~~~~L~eamEq--q~isi~kagi~~~l~ar~sIIAAaN 650 (932)
.++.|..++-.++ +| ...|+||||+|.+-..-+..=||+|.. .++-..=.|..+.-+.++.|+||||
T Consensus 163 ---lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 163 ---LTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred ---cchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 1234444433332 33 347999999999877667777888753 1111122455555567899999999
Q ss_pred CCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhh
Q 002353 651 PVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDS 701 (932)
Q Consensus 651 p~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~ 701 (932)
.+. +|++++++|+.-.|.| ..|+...-++|.+-||..
T Consensus 240 RP~-------------DlDeAiiRR~p~rf~V-~lP~~~qR~kILkviLk~ 276 (386)
T KOG0737|consen 240 RPF-------------DLDEAIIRRLPRRFHV-GLPDAEQRRKILKVILKK 276 (386)
T ss_pred CCc-------------cHHHHHHHhCcceeee-CCCchhhHHHHHHHHhcc
Confidence 977 8999999999999988 788877778777776653
No 95
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.8e-10 Score=136.33 Aligned_cols=220 Identities=21% Similarity=0.295 Sum_probs=140.4
Q ss_pred HHHHHHHHHHhcChhhHHHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHH
Q 002353 477 QEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 477 ~~d~~~i~~l~~~~~i~~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va 556 (932)
.+++.+|-++-++|.-|..+-..|. | .+||+||||||||.|||++|
T Consensus 320 K~El~E~V~fLKNP~~Y~~lGAKiP-------------------------------k---GvLL~GPPGTGKTLLAKAiA 365 (774)
T KOG0731|consen 320 KEELMEFVKFLKNPEQYQELGAKIP-------------------------------K---GVLLVGPPGTGKTLLAKAIA 365 (774)
T ss_pred HHHHHHHHHHhcCHHHHHHcCCcCc-------------------------------C---ceEEECCCCCcHHHHHHHHh
Confidence 4677788888899998887644322 1 69999999999999999999
Q ss_pred HhCCCcEEecCCCccccccccee----ecCcccchhhhccCceeccCCCeeeeccccccCcchh------------hhHH
Q 002353 557 KTGQRAVYTTGKGASAVGLTAAV----HKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDR------------VSIH 620 (932)
Q Consensus 557 ~~~~r~v~~~g~~ss~~gLta~v----~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~------------~~L~ 620 (932)
..+.-+++.. .++..+.+..++ +++-+. -+-.. .-.|+||||||....... ..|.
T Consensus 366 GEAgVPF~sv-SGSEFvE~~~g~~asrvr~lf~-------~ar~~-aP~iifideida~~~~r~G~~~~~~~~e~e~tln 436 (774)
T KOG0731|consen 366 GEAGVPFFSV-SGSEFVEMFVGVGASRVRDLFP-------LARKN-APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLN 436 (774)
T ss_pred cccCCceeee-chHHHHHHhcccchHHHHHHHH-------Hhhcc-CCeEEEecccccccccccccccCCCChHHHHHHH
Confidence 9999888874 344444333222 111111 01111 126999999998765431 1222
Q ss_pred HHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEEEEecCCCChhHhHHHHHHH
Q 002353 621 EAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLCVVKDVVDPVVDEMLAKFV 698 (932)
Q Consensus 621 eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~~l~D~~d~~~D~~La~~v 698 (932)
+.+ +.-.|...+ ..+.|+||||... .|+++||+ |||-.+.+ |.|+...-. .|
T Consensus 437 Qll------~emDgf~~~--~~vi~~a~tnr~d-------------~ld~allrpGRfdr~i~i-~~p~~~~r~----~i 490 (774)
T KOG0731|consen 437 QLL------VEMDGFETS--KGVIVLAATNRPD-------------ILDPALLRPGRFDRQIQI-DLPDVKGRA----SI 490 (774)
T ss_pred HHH------HHhcCCcCC--CcEEEEeccCCcc-------------ccCHHhcCCCccccceec-cCCchhhhH----HH
Confidence 222 222343322 5689999999976 78999998 99999987 666654433 45
Q ss_pred HhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCC
Q 002353 699 IDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHG 778 (932)
Q Consensus 699 l~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~ 778 (932)
+..|.+..+.. .....+.+ +|. ..|.+
T Consensus 491 ~~~h~~~~~~~--------------------------~e~~dl~~---~a~--~t~gf---------------------- 517 (774)
T KOG0731|consen 491 LKVHLRKKKLD--------------------------DEDVDLSK---LAS--LTPGF---------------------- 517 (774)
T ss_pred HHHHhhccCCC--------------------------cchhhHHH---HHh--cCCCC----------------------
Confidence 66666543320 01112222 222 13433
Q ss_pred CCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhh
Q 002353 779 QGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSF 823 (932)
Q Consensus 779 ~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~ 823 (932)
+.-.|-+++.-|..+|--+.+.+|+..|+..|++-....+
T Consensus 518 -----~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~ 557 (774)
T KOG0731|consen 518 -----SGADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAGM 557 (774)
T ss_pred -----cHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhccc
Confidence 4455667777778888888899999999999998665554
No 96
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.13 E-value=1.1e-09 Score=137.64 Aligned_cols=238 Identities=15% Similarity=0.200 Sum_probs=141.3
Q ss_pred HHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCc---EEecCCC-
Q 002353 494 ERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRA---VYTTGKG- 569 (932)
Q Consensus 494 ~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~---v~~~g~~- 569 (932)
..+-..+...|+|++.+..++.-++..... .+.... |..-.+||+||||||||.+|+++++.+..+ +.....+
T Consensus 557 ~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~-gl~~~~--~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~ 633 (852)
T TIGR03346 557 LHMEEVLHERVVGQDEAVEAVSDAIRRSRA-GLSDPN--RPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSE 633 (852)
T ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhc-cCCCCC--CCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 345566778899999988888877653210 000101 112279999999999999999999976432 1111000
Q ss_pred ----cccccccceeecCcccchhhh-ccCcee----ccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeec
Q 002353 570 ----ASAVGLTAAVHKDPVTREWTL-EGGALV----LADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQ 640 (932)
Q Consensus 570 ----ss~~gLta~v~kd~~~g~~~l-e~Gal~----lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ 640 (932)
.+...|.++. .|.... +.|.+. .....|++||||+++++..+..|+++|++|.++-.+ |....+
T Consensus 634 ~~~~~~~~~l~g~~-----~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~-g~~vd~- 706 (852)
T TIGR03346 634 YMEKHSVARLIGAP-----PGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQ-GRTVDF- 706 (852)
T ss_pred hcccchHHHhcCCC-----CCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCC-CeEEec-
Confidence 0001111110 110001 122222 224469999999999999999999999999987432 333332
Q ss_pred cceEEEeeeCCCCCccCC---C---CCcc------cccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCC
Q 002353 641 ARCSVIAAANPVGGRYDS---S---KTFS------ENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPK 708 (932)
Q Consensus 641 ar~sIIAAaNp~~Gry~~---~---~~~~------~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~ 708 (932)
.++.||+|||........ . .... ..-.+.+.|+.|+|-++++.. .+.+.-..|+...+.
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~P-L~~e~l~~I~~l~L~-------- 777 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHP-LGREQIARIVEIQLG-------- 777 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCC-cCHHHHHHHHHHHHH--------
Confidence 357899999974321110 0 0000 123578899999998888733 333322333322211
Q ss_pred CCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCc--ccCHH
Q 002353 709 GVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGV--PIAVR 786 (932)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~--pitvR 786 (932)
.+.+.+ ....+.+.+++++.+.|.++ +| +.++|
T Consensus 778 -------------------------------~l~~~l--~~~~~~l~i~~~a~~~L~~~------------~~~~~~gaR 812 (852)
T TIGR03346 778 -------------------------------RLRKRL--AERKITLELSDAALDFLAEA------------GYDPVYGAR 812 (852)
T ss_pred -------------------------------HHHHHH--HHCCCeecCCHHHHHHHHHh------------CCCCCCCch
Confidence 222222 22345678999999999886 55 78999
Q ss_pred HHHHHHHHH
Q 002353 787 HIESMIRMS 795 (932)
Q Consensus 787 ~LEslIRlA 795 (932)
.|..+|+-.
T Consensus 813 ~L~~~i~~~ 821 (852)
T TIGR03346 813 PLKRAIQRE 821 (852)
T ss_pred hHHHHHHHH
Confidence 999998743
No 97
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=9.6e-10 Score=130.37 Aligned_cols=138 Identities=17% Similarity=0.253 Sum_probs=83.5
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCc----E-----EecCCC----
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRA----V-----YTTGKG---- 569 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~----v-----~~~g~~---- 569 (932)
.|+||+.+++.|.-++..+. + .| -+||+|++|||||++++.+++.+.-. . ..+|..
T Consensus 17 dVIGQe~vv~~L~~al~~gR---L--pH------A~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~ 85 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQR---L--HH------AYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACT 85 (700)
T ss_pred HHcCcHHHHHHHHHHHHhCC---C--ce------EEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHH
Confidence 57899999998888877652 1 12 35999999999999999999976421 0 001111
Q ss_pred -------cccccccceeecCcccchhhhccCce---eccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEee
Q 002353 570 -------ASAVGLTAAVHKDPVTREWTLEGGAL---VLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSL 639 (932)
Q Consensus 570 -------ss~~gLta~v~kd~~~g~~~le~Gal---~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l 639 (932)
.....+.++.... ......+..... ......|++|||++.|+...+++|+..||+-
T Consensus 86 ~I~aG~hpDviEIdAas~~g-VDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP------------- 151 (700)
T PRK12323 86 EIDAGRFVDYIEMDAASNRG-VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP------------- 151 (700)
T ss_pred HHHcCCCCcceEecccccCC-HHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC-------------
Confidence 0111111110000 000000000000 1223469999999999999999999999852
Q ss_pred ccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccE
Q 002353 640 QARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDV 678 (932)
Q Consensus 640 ~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDl 678 (932)
+.++.||.+||... .|.++|+||+-.
T Consensus 152 P~~v~FILaTtep~-------------kLlpTIrSRCq~ 177 (700)
T PRK12323 152 PEHVKFILATTDPQ-------------KIPVTVLSRCLQ 177 (700)
T ss_pred CCCceEEEEeCChH-------------hhhhHHHHHHHh
Confidence 23455566665433 688999999843
No 98
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.11 E-value=1.6e-09 Score=134.12 Aligned_cols=198 Identities=15% Similarity=0.144 Sum_probs=116.2
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCC----------cEEecCCCcc
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQR----------AVYTTGKGAS 571 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r----------~v~~~g~~ss 571 (932)
..++|++..-..++-.|.... .-|+||+||||||||.+++.+++.... .++.. +
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~----~ 245 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL----D 245 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe----c
Confidence 357788887776665444431 118999999999999999999986521 12211 0
Q ss_pred cccccceeecCcccchhhhccC-cee---ccCCCeeeeccccccCcc---------hhhhHHHHHhhceeeeeccceeEe
Q 002353 572 AVGLTAAVHKDPVTREWTLEGG-ALV---LADRGICLIDEFDKMNDQ---------DRVSIHEAMEQQSISISKAGIVTS 638 (932)
Q Consensus 572 ~~gLta~v~kd~~~g~~~le~G-al~---lAd~GIl~IDE~dkm~~~---------~~~~L~eamEqq~isi~kagi~~~ 638 (932)
...+.++. ...|+|.-.-. .+. ...+.|+||||++.+... .+..|..+|+.|.
T Consensus 246 ~~~l~a~~---~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~----------- 311 (731)
T TIGR02639 246 MGSLLAGT---KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGK----------- 311 (731)
T ss_pred HHHHhhhc---cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCC-----------
Confidence 11111111 11233322111 111 123579999999988532 2344555555443
Q ss_pred eccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCcc
Q 002353 639 LQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKN 718 (932)
Q Consensus 639 l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~ 718 (932)
+.+|+|||+.. | ...+..+++|.+||..+.+ ..|+.+.-..+.+.+...+...|.
T Consensus 312 ----i~~IgaTt~~e--~------~~~~~~d~al~rRf~~i~v--~~p~~~~~~~il~~~~~~~e~~~~----------- 366 (731)
T TIGR02639 312 ----LRCIGSTTYEE--Y------KNHFEKDRALSRRFQKIDV--GEPSIEETVKILKGLKEKYEEFHH----------- 366 (731)
T ss_pred ----eEEEEecCHHH--H------HHHhhhhHHHHHhCceEEe--CCCCHHHHHHHHHHHHHHHHhccC-----------
Confidence 46799999732 2 2234779999999986433 556655555555555443322222
Q ss_pred chhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCC-cCChhHHHHHHHHHH
Q 002353 719 ESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFP-RLHDPDMEKLTHVYA 769 (932)
Q Consensus 719 ~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P-~Ls~ea~~~L~~~Y~ 769 (932)
-.++.+.+..-+.++.+++.. .+++.|.+.|.....
T Consensus 367 ---------------v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a 403 (731)
T TIGR02639 367 ---------------VKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGA 403 (731)
T ss_pred ---------------cccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhh
Confidence 125677787777777776554 567888887766544
No 99
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.08 E-value=1e-09 Score=127.08 Aligned_cols=193 Identities=22% Similarity=0.237 Sum_probs=112.3
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceecc---CCCeeeeccccccC
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLA---DRGICLIDEFDKMN 612 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lA---d~GIl~IDE~dkm~ 612 (932)
-+|||+||||||||++|+++++.+...++.. .++. +...... .+.. .....+..| ..+|+||||||.+.
T Consensus 218 ~gVLL~GPPGTGKT~LAraIA~el~~~fi~V-~~se---L~~k~~G---e~~~-~vr~lF~~A~~~~P~ILfIDEID~l~ 289 (438)
T PTZ00361 218 KGVILYGPPGTGKTLLAKAVANETSATFLRV-VGSE---LIQKYLG---DGPK-LVRELFRVAEENAPSIVFIDEIDAIG 289 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEEE-ecch---hhhhhcc---hHHH-HHHHHHHHHHhCCCcEEeHHHHHHHh
Confidence 3799999999999999999999876554432 1111 1110000 0000 001111222 34699999999874
Q ss_pred cc-----------hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEE
Q 002353 613 DQ-----------DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVL 679 (932)
Q Consensus 613 ~~-----------~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli 679 (932)
.. .+..+.+.+.+- .|.. -..++.||+|||... .|++++++ |||..
T Consensus 290 ~kR~~~~sgg~~e~qr~ll~LL~~L------dg~~--~~~~V~VI~ATNr~d-------------~LDpaLlRpGRfd~~ 348 (438)
T PTZ00361 290 TKRYDATSGGEKEIQRTMLELLNQL------DGFD--SRGDVKVIMATNRIE-------------SLDPALIRPGRIDRK 348 (438)
T ss_pred ccCCCCCCcccHHHHHHHHHHHHHH------hhhc--ccCCeEEEEecCChH-------------HhhHHhccCCeeEEE
Confidence 32 122344444321 1110 123578999999765 67888886 99998
Q ss_pred EEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChh
Q 002353 680 CVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDP 759 (932)
Q Consensus 680 ~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~e 759 (932)
+.+ ..|+...-..|. ..|....+ +.+.+
T Consensus 349 I~~-~~Pd~~~R~~Il----~~~~~k~~--------------------------------------------l~~dv--- 376 (438)
T PTZ00361 349 IEF-PNPDEKTKRRIF----EIHTSKMT--------------------------------------------LAEDV--- 376 (438)
T ss_pred EEe-CCCCHHHHHHHH----HHHHhcCC--------------------------------------------CCcCc---
Confidence 887 555554433333 22221111 00000
Q ss_pred HHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh
Q 002353 760 DMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLD 821 (932)
Q Consensus 760 a~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~ 821 (932)
..+.+... .-..|...+.++++-|--.|--+.+..|+.+|+..|++-+..
T Consensus 377 dl~~la~~------------t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 377 DLEEFIMA------------KDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLY 426 (438)
T ss_pred CHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHh
Confidence 01111111 224678889999999888888888999999999999887644
No 100
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=4e-09 Score=124.89 Aligned_cols=283 Identities=17% Similarity=0.185 Sum_probs=157.0
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCc----EEecCCCcc-------
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRA----VYTTGKGAS------- 571 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~----v~~~g~~ss------- 571 (932)
.|+||+.+++.|.-++..+. + .| .+||+||||||||++|+.+++.+.-. ...||.-.+
T Consensus 17 divGq~~v~~~L~~~~~~~~---l--~h------a~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g 85 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQY---L--HH------AYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEG 85 (509)
T ss_pred HhcCCHHHHHHHHHHHHhCC---C--Ce------eEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcC
Confidence 57899999999888886652 1 11 36999999999999999999976321 011111101
Q ss_pred ----cccccceeecCcccchhhh----cc--CceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeecc
Q 002353 572 ----AVGLTAAVHKDPVTREWTL----EG--GALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQA 641 (932)
Q Consensus 572 ----~~gLta~v~kd~~~g~~~l----e~--Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~a 641 (932)
...+.++.. ++...+ +. -.-..+...|++|||++.|+....++|+..||.- +.
T Consensus 86 ~~~d~~eidaas~----~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep-------------p~ 148 (509)
T PRK14958 86 RFPDLFEVDAASR----TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP-------------PS 148 (509)
T ss_pred CCceEEEEccccc----CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc-------------CC
Confidence 111111110 111000 00 0011234469999999999999999999999952 33
Q ss_pred ceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchh
Q 002353 642 RCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESE 721 (932)
Q Consensus 642 r~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~ 721 (932)
.+.+|.+||... .++.+++||+-.+-+
T Consensus 149 ~~~fIlattd~~-------------kl~~tI~SRc~~~~f---------------------------------------- 175 (509)
T PRK14958 149 HVKFILATTDHH-------------KLPVTVLSRCLQFHL---------------------------------------- 175 (509)
T ss_pred CeEEEEEECChH-------------hchHHHHHHhhhhhc----------------------------------------
Confidence 455565555322 577789999843222
Q ss_pred hhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHh
Q 002353 722 EDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARM 801 (932)
Q Consensus 722 ~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl 801 (932)
..++...+.+++...-+.-.-.+++++.+.|.+. ..+++|.+.+++.-+.++
T Consensus 176 ------------~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~-------------s~GslR~al~lLdq~ia~--- 227 (509)
T PRK14958 176 ------------AQLPPLQIAAHCQHLLKEENVEFENAALDLLARA-------------ANGSVRDALSLLDQSIAY--- 227 (509)
T ss_pred ------------CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------cCCcHHHHHHHHHHHHhc---
Confidence 1134445555554222112345778888877765 236889988888655443
Q ss_pred hCCCCcCHHHHHHHHHHHHhhhhhhhhhchHHH--------HHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 002353 802 RLRQHVTQEDVNMAIRVLLDSFISTQKFGVQKA--------LQRSFRKYMTFKKEYNALLLDLLRELVKNALHFEEIISG 873 (932)
Q Consensus 802 ~lr~~Vt~~Dv~~AI~l~~~S~~~~~k~s~~~~--------l~~~f~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 873 (932)
....||.+||...+.......+ +.+..+ +-..+......+.+....|..++..+.+-.+. +....
T Consensus 228 -~~~~It~~~V~~~lg~~~~~~i----~~ll~al~~~d~~~~l~~~~~l~~~g~~~~~il~~l~~~~~~~~~~--~~~~~ 300 (509)
T PRK14958 228 -GNGKVLIADVKTMLGTIEPLLL----FDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAII--QTVPE 300 (509)
T ss_pred -CCCCcCHHHHHHHHCCCCHHHH----HHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH--hhCcc
Confidence 3678999999876544333211 111111 11123333444555554444444433322111 21111
Q ss_pred CCCCCCCccceeeHHHHHHHHHhcCccccccccCc
Q 002353 874 SRSTSGLSHIDVKVVDLLNRAQELEIYDLHPFFSS 908 (932)
Q Consensus 874 ~~~~~~~~~~~i~~~~l~~~~~~~~i~~~~~f~~s 908 (932)
....-....+...|+.+...++.-||.-
T Consensus 301 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (509)
T PRK14958 301 -------ALIENDSEQLRQLAKLLDREDVQLFYQI 328 (509)
T ss_pred -------ccccchHHHHHHHHHhCCHHHHHHHHHH
Confidence 1112245567777777776666666663
No 101
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=9.4e-09 Score=122.36 Aligned_cols=208 Identities=16% Similarity=0.165 Sum_probs=125.3
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcE----EecCCC---------
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAV----YTTGKG--------- 569 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v----~~~g~~--------- 569 (932)
.|+||+.+++.|.-++.++.. .| .+||+||||||||++|+.+++.+.-.. ..||.-
T Consensus 16 dVIGQe~vv~~L~~aI~~grl-----~H------AyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g 84 (702)
T PRK14960 16 ELVGQNHVSRALSSALERGRL-----HH------AYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEG 84 (702)
T ss_pred HhcCcHHHHHHHHHHHHcCCC-----Ce------EEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcC
Confidence 578999999999888876521 12 669999999999999999998753210 001111
Q ss_pred --cccccccceeecCcccchhh-hccC--ceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceE
Q 002353 570 --ASAVGLTAAVHKDPVTREWT-LEGG--ALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCS 644 (932)
Q Consensus 570 --ss~~gLta~v~kd~~~g~~~-le~G--al~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~s 644 (932)
.....+.++.... ...... +... .-..+...|++|||++.|+....++|+..||.- +..+.
T Consensus 85 ~hpDviEIDAAs~~~-VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP-------------P~~v~ 150 (702)
T PRK14960 85 RFIDLIEIDAASRTK-VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP-------------PEHVK 150 (702)
T ss_pred CCCceEEecccccCC-HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC-------------CCCcE
Confidence 1111111111000 000000 0000 001224469999999999999999999999852 22334
Q ss_pred EEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhh
Q 002353 645 VIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDI 724 (932)
Q Consensus 645 IIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~ 724 (932)
+|.+||-.. .++.+++||+..+-+
T Consensus 151 FILaTtd~~-------------kIp~TIlSRCq~feF------------------------------------------- 174 (702)
T PRK14960 151 FLFATTDPQ-------------KLPITVISRCLQFTL------------------------------------------- 174 (702)
T ss_pred EEEEECChH-------------hhhHHHHHhhheeec-------------------------------------------
Confidence 555554332 567889999943332
Q ss_pred hhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCC
Q 002353 725 QVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLR 804 (932)
Q Consensus 725 ~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr 804 (932)
..++.+.+.+++...-..-...+++++...|.+. ..+++|...+++.-+.+. ..
T Consensus 175 ---------kpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~-------------S~GdLRdALnLLDQaIay----g~ 228 (702)
T PRK14960 175 ---------RPLAVDEITKHLGAILEKEQIAADQDAIWQIAES-------------AQGSLRDALSLTDQAIAY----GQ 228 (702)
T ss_pred ---------cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHHHHHh----cC
Confidence 1134455666665322222456888888888874 236889888887644433 36
Q ss_pred CCcCHHHHHHHHH
Q 002353 805 QHVTQEDVNMAIR 817 (932)
Q Consensus 805 ~~Vt~~Dv~~AI~ 817 (932)
..|+.++|...+.
T Consensus 229 g~IT~edV~~lLG 241 (702)
T PRK14960 229 GAVHHQDVKEMLG 241 (702)
T ss_pred CCcCHHHHHHHhc
Confidence 7899999976533
No 102
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=7.9e-09 Score=122.58 Aligned_cols=209 Identities=16% Similarity=0.165 Sum_probs=123.4
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEE----ecCCC---------
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVY----TTGKG--------- 569 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~----~~g~~--------- 569 (932)
.|.||+.++..+.-++..+. . .| .+||+||||||||++|+.+++.+.-... .+|.-
T Consensus 17 diiGq~~~v~~L~~~i~~~r---l--~h------a~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~ 85 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQK---V--HH------AYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNN 85 (546)
T ss_pred HhcCcHHHHHHHHHHHHcCC---C--Ce------EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcC
Confidence 46799999998887776541 1 11 4789999999999999999986532100 01110
Q ss_pred --cccccccceeecCc-ccchhhhc-c-CceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceE
Q 002353 570 --ASAVGLTAAVHKDP-VTREWTLE-G-GALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCS 644 (932)
Q Consensus 570 --ss~~gLta~v~kd~-~~g~~~le-~-Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~s 644 (932)
.....+.++..... .... .++ . ..-..++..|++|||+++|+...+..|+..||.. +..+.
T Consensus 86 ~~~dlieidaas~~gvd~ir~-ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep-------------p~~v~ 151 (546)
T PRK14957 86 SFIDLIEIDAASRTGVEETKE-ILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP-------------PEYVK 151 (546)
T ss_pred CCCceEEeecccccCHHHHHH-HHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC-------------CCCce
Confidence 00111111000000 0000 000 0 0012345679999999999999999999999963 22334
Q ss_pred EEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhh
Q 002353 645 VIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDI 724 (932)
Q Consensus 645 IIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~ 724 (932)
+|.+|+-.. .+..+++||+-.+-+-
T Consensus 152 fIL~Ttd~~-------------kil~tI~SRc~~~~f~------------------------------------------ 176 (546)
T PRK14957 152 FILATTDYH-------------KIPVTILSRCIQLHLK------------------------------------------ 176 (546)
T ss_pred EEEEECChh-------------hhhhhHHHheeeEEeC------------------------------------------
Confidence 454443222 5677899999544331
Q ss_pred hhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCC
Q 002353 725 QVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLR 804 (932)
Q Consensus 725 ~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr 804 (932)
.++.+.+.+++...-..-...+++++...|..+ ..+++|.+.+++..+.+.+ .
T Consensus 177 ----------~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~-------------s~GdlR~alnlLek~i~~~----~ 229 (546)
T PRK14957 177 ----------HISQADIKDQLKIILAKENINSDEQSLEYIAYH-------------AKGSLRDALSLLDQAISFC----G 229 (546)
T ss_pred ----------CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHHHHHhc----c
Confidence 134445555555322122456788888888875 2367888888876555442 2
Q ss_pred CCcCHHHHHHHHHH
Q 002353 805 QHVTQEDVNMAIRV 818 (932)
Q Consensus 805 ~~Vt~~Dv~~AI~l 818 (932)
..|+.++|..++..
T Consensus 230 ~~It~~~V~~~l~~ 243 (546)
T PRK14957 230 GELKQAQIKQMLGI 243 (546)
T ss_pred CCCCHHHHHHHHcc
Confidence 67999999886443
No 103
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.04 E-value=3.5e-09 Score=132.31 Aligned_cols=252 Identities=13% Similarity=0.151 Sum_probs=146.1
Q ss_pred HHHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCC---cEEecCC-
Q 002353 493 GERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQR---AVYTTGK- 568 (932)
Q Consensus 493 ~~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r---~v~~~g~- 568 (932)
...|...+-..|+||+.+..++.-++.... ..+....+..| .+||+||||||||.+|+++++.+.. .+.....
T Consensus 557 l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~-~gl~~~~~p~~--~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dms 633 (852)
T TIGR03345 557 VLSLPDRLAERVIGQDHALEAIAERIRTAR-AGLEDPRKPLG--VFLLVGPSGVGKTETALALAELLYGGEQNLITINMS 633 (852)
T ss_pred HHHHHHHhcCeEcChHHHHHHHHHHHHHHh-cCCCCCCCCce--EEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHH
Confidence 345778888999999998888876664210 00111112222 6899999999999999999998632 2221100
Q ss_pred ----CcccccccceeecCcccchh-hhccCcee----ccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEee
Q 002353 569 ----GASAVGLTAAVHKDPVTREW-TLEGGALV----LADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSL 639 (932)
Q Consensus 569 ----~ss~~gLta~v~kd~~~g~~-~le~Gal~----lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l 639 (932)
..+...|.++. .|.. ..+.|.|. ....+|++||||+++++..+..|+++|++|.++-. .|....+
T Consensus 634 e~~~~~~~~~l~g~~-----~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~-~Gr~vd~ 707 (852)
T TIGR03345 634 EFQEAHTVSRLKGSP-----PGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDG-EGREIDF 707 (852)
T ss_pred HhhhhhhhccccCCC-----CCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecC-CCcEEec
Confidence 00111111110 1110 01233332 23668999999999999999999999999998754 3444333
Q ss_pred ccceEEEeeeCCCCCccCC-----C-----CCccc------ccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhcc
Q 002353 640 QARCSVIAAANPVGGRYDS-----S-----KTFSE------NVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHF 703 (932)
Q Consensus 640 ~ar~sIIAAaNp~~Gry~~-----~-----~~~~~------ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~ 703 (932)
. ++.||.|||-..+.+.. . ..+.. .-.+.++|++|++ ++++ ...+.+.-..++..-+..
T Consensus 708 ~-n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F-~pLs~e~l~~Iv~~~L~~-- 782 (852)
T TIGR03345 708 K-NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPY-LPLDDDVLAAIVRLKLDR-- 782 (852)
T ss_pred c-ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEe-CCCCHHHHHHHHHHHHHH--
Confidence 3 68999999975533211 0 00000 1248899999998 4554 333333333333222110
Q ss_pred CCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhh-cCCCcCChhHHHHHHHHHHHHHhcccCCCCcc
Q 002353 704 KSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKL-NVFPRLHDPDMEKLTHVYAELRRESSHGQGVP 782 (932)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~-~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~p 782 (932)
+.++ ++++ .+.-.+++++.+.|..... +-.
T Consensus 783 ------------------------------------l~~r---l~~~~gi~l~i~d~a~~~La~~g~----------~~~ 813 (852)
T TIGR03345 783 ------------------------------------IARR---LKENHGAELVYSEALVEHIVARCT----------EVE 813 (852)
T ss_pred ------------------------------------HHHH---HHHhcCceEEECHHHHHHHHHHcC----------CCC
Confidence 1111 2222 3455788999998887632 223
Q ss_pred cCHHHHHHHHHH--HHHHHHhhCCCCc
Q 002353 783 IAVRHIESMIRM--SEAHARMRLRQHV 807 (932)
Q Consensus 783 itvR~LEslIRl--AeA~Akl~lr~~V 807 (932)
..+|.|..+|+. .-+.|.+-|...+
T Consensus 814 ~GAR~L~r~Ie~~i~~~la~~~l~~~~ 840 (852)
T TIGR03345 814 SGARNIDAILNQTLLPELSRQILERLA 840 (852)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhChh
Confidence 568888888863 3455554444443
No 104
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=1.4e-08 Score=119.87 Aligned_cols=216 Identities=15% Similarity=0.175 Sum_probs=129.1
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcE--------EecCCCccccc
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAV--------YTTGKGASAVG 574 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v--------~~~g~~ss~~g 574 (932)
.+.||+.+.+.+.-++..+. + .| ++||+||||||||++|+.+++.+.-.. ..+|...+...
T Consensus 22 dliGq~~vv~~L~~ai~~~r---i--~~------a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~ 90 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDR---L--AG------GYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCIS 90 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCC---C--Cc------eEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHH
Confidence 46799999998877666552 1 13 899999999999999999999764321 11111111000
Q ss_pred ccceee-----cCc--ccchhhh----c-c-CceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeecc
Q 002353 575 LTAAVH-----KDP--VTREWTL----E-G-GALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQA 641 (932)
Q Consensus 575 Lta~v~-----kd~--~~g~~~l----e-~-Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~a 641 (932)
+..... -++ .++.-.+ + + -.-..+...|++|||++.|+...+.+|+..||.- +.
T Consensus 91 i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep-------------p~ 157 (507)
T PRK06645 91 FNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP-------------PP 157 (507)
T ss_pred HhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhc-------------CC
Confidence 000000 000 0110000 0 0 0012346789999999999998899999999852 33
Q ss_pred ceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchh
Q 002353 642 RCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESE 721 (932)
Q Consensus 642 r~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~ 721 (932)
.+.+|.+|+... .++.++.||+- .|-+
T Consensus 158 ~~vfI~aTte~~-------------kI~~tI~SRc~-~~ef--------------------------------------- 184 (507)
T PRK06645 158 HIIFIFATTEVQ-------------KIPATIISRCQ-RYDL--------------------------------------- 184 (507)
T ss_pred CEEEEEEeCChH-------------HhhHHHHhcce-EEEc---------------------------------------
Confidence 456666665432 57888999984 3333
Q ss_pred hhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHh
Q 002353 722 EDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARM 801 (932)
Q Consensus 722 ~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl 801 (932)
..++.+.+.+|+...-+.-.-.++++|.+.|... ..+++|.+.+++.-+.+++.-
T Consensus 185 ------------~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~-------------s~GslR~al~~Ldkai~~~~~ 239 (507)
T PRK06645 185 ------------RRLSFEEIFKLLEYITKQENLKTDIEALRIIAYK-------------SEGSARDAVSILDQAASMSAK 239 (507)
T ss_pred ------------cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHHHHHhhcc
Confidence 1133445555555222222446778888887764 236889998888776666531
Q ss_pred hCCCCcCHHHHHHHHHHHHh
Q 002353 802 RLRQHVTQEDVNMAIRVLLD 821 (932)
Q Consensus 802 ~lr~~Vt~~Dv~~AI~l~~~ 821 (932)
. ...||.+||...+.+..+
T Consensus 240 ~-~~~It~~~V~~llg~~~~ 258 (507)
T PRK06645 240 S-DNIISPQVINQMLGLVDS 258 (507)
T ss_pred C-CCCcCHHHHHHHHCCCCH
Confidence 1 346999999877554433
No 105
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.03 E-value=3.4e-10 Score=115.55 Aligned_cols=139 Identities=18% Similarity=0.177 Sum_probs=84.4
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCC----cEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeecccccc
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQR----AVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKM 611 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r----~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm 611 (932)
.++||+||+|+|||.+++.+++.+.- .+... ..+.... ..-............+|..-.+.+||+|||||+|+
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~-d~s~~~~--~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRI-DMSEYSE--GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEE-EGGGHCS--HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHH-hhhcccc--cchHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 38999999999999999999998752 22110 0000000 00000001111112234455567789999999999
Q ss_pred Cc-----------chhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCC-----C-------c--cccc
Q 002353 612 ND-----------QDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSK-----T-------F--SENV 666 (932)
Q Consensus 612 ~~-----------~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~-----~-------~--~~ni 666 (932)
.+ ..|..|+++||.++++-.+ |. ..--.++.+|+|+|--........ . . .-+-
T Consensus 81 ~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~-g~-~vd~~n~ifI~Tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (171)
T PF07724_consen 81 HPSNSGGADVSGEGVQNSLLQLLEGGTLTDSY-GR-TVDTSNIIFIMTSNFGAEEIIDASRSGEAIEQEQEEQIRDLVEY 158 (171)
T ss_dssp SHTTTTCSHHHHHHHHHHHHHHHHHSEEEETT-CC-EEEGTTEEEEEEESSSTHHHHHCHHHCTCCHHHHCHHHHHHHHH
T ss_pred cccccccchhhHHHHHHHHHHHhcccceeccc-ce-EEEeCCceEEEecccccchhhhhhccccccHHHHHHHHHHHHHc
Confidence 99 9999999999999987533 32 222357899999997542111100 0 0 0012
Q ss_pred CCChhhhccccEE
Q 002353 667 ELTDPIISRFDVL 679 (932)
Q Consensus 667 ~L~~~LLsRFDli 679 (932)
.+.+.|+.|||.+
T Consensus 159 ~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 159 GFRPEFLGRIDVI 171 (171)
T ss_dssp TS-HHHHTTSSEE
T ss_pred CCCHHHHccCCcC
Confidence 4888899998864
No 106
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.02 E-value=8.7e-09 Score=123.64 Aligned_cols=212 Identities=18% Similarity=0.188 Sum_probs=127.1
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEE----ecCCCcccccccce
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVY----TTGKGASAVGLTAA 578 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~----~~g~~ss~~gLta~ 578 (932)
.|+||+.+++.|.-++..+. + .| .+||+|++|||||++|+.+++.+.-... .+|...+...+..+
T Consensus 17 dIIGQe~vv~~L~~ai~~~r---l--~H------a~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g 85 (709)
T PRK08691 17 DLVGQEHVVKALQNALDEGR---L--HH------AYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAG 85 (709)
T ss_pred HHcCcHHHHHHHHHHHHcCC---C--Ce------EEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhcc
Confidence 46899999998888877652 1 12 5899999999999999999987532110 11111100000000
Q ss_pred -----eecCc--ccch----hhhcc--CceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEE
Q 002353 579 -----VHKDP--VTRE----WTLEG--GALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSV 645 (932)
Q Consensus 579 -----v~kd~--~~g~----~~le~--Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sI 645 (932)
+.-+. ..+. ..++. -.-..+...|++|||+++|+......|+..||.- +..+.+
T Consensus 86 ~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP-------------p~~v~f 152 (709)
T PRK08691 86 RYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP-------------PEHVKF 152 (709)
T ss_pred CccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC-------------CCCcEE
Confidence 00000 0110 00110 0001245679999999999998888999999852 233556
Q ss_pred EeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhh
Q 002353 646 IAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQ 725 (932)
Q Consensus 646 IAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~ 725 (932)
|.+||... .+..+++||+-. |.+
T Consensus 153 ILaTtd~~-------------kL~~TIrSRC~~-f~f------------------------------------------- 175 (709)
T PRK08691 153 ILATTDPH-------------KVPVTVLSRCLQ-FVL------------------------------------------- 175 (709)
T ss_pred EEEeCCcc-------------ccchHHHHHHhh-hhc-------------------------------------------
Confidence 66665433 577888898822 111
Q ss_pred hhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCC
Q 002353 726 VADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQ 805 (932)
Q Consensus 726 ~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~ 805 (932)
..++.+.+.+++...-..-.-.+++++...|.+. ..+++|.+.+++..+.++ ...
T Consensus 176 --------~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~-------------A~GslRdAlnLLDqaia~----g~g 230 (709)
T PRK08691 176 --------RNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRA-------------AAGSMRDALSLLDQAIAL----GSG 230 (709)
T ss_pred --------CCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH-------------hCCCHHHHHHHHHHHHHh----cCC
Confidence 1134455555655222222346788888888875 236899999998765554 256
Q ss_pred CcCHHHHHHHHHHHH
Q 002353 806 HVTQEDVNMAIRVLL 820 (932)
Q Consensus 806 ~Vt~~Dv~~AI~l~~ 820 (932)
.|+.++|...+....
T Consensus 231 ~It~e~V~~lLG~~d 245 (709)
T PRK08691 231 KVAENDVRQMIGAVD 245 (709)
T ss_pred CcCHHHHHHHHcccC
Confidence 799999888755543
No 107
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.02 E-value=6.4e-09 Score=130.32 Aligned_cols=181 Identities=17% Similarity=0.223 Sum_probs=109.6
Q ss_pred HHHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCC---cEEecCCC
Q 002353 493 GERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQR---AVYTTGKG 569 (932)
Q Consensus 493 ~~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r---~v~~~g~~ 569 (932)
...|-..+...|+||+.+...+.-++..... .+.... |.-..+||+||||||||.+|+++++.+.. .+.....+
T Consensus 500 l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~-gl~~~~--~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s 576 (821)
T CHL00095 500 LLHMEETLHKRIIGQDEAVVAVSKAIRRARV-GLKNPN--RPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMS 576 (821)
T ss_pred HHHHHHHhcCcCcChHHHHHHHHHHHHHHhh-cccCCC--CCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEch
Confidence 3467778889999999999988877653210 001111 11125899999999999999999997531 12111000
Q ss_pred -----cccccccceeecCcccchhhh-ccCc----eeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEee
Q 002353 570 -----ASAVGLTAAVHKDPVTREWTL-EGGA----LVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSL 639 (932)
Q Consensus 570 -----ss~~gLta~v~kd~~~g~~~l-e~Ga----l~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l 639 (932)
.+...|.++ + .|.... +.|. +.....+|++|||++++++..+..|+++|++|.++..+ |....+
T Consensus 577 ~~~~~~~~~~l~g~----~-~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~-g~~v~~ 650 (821)
T CHL00095 577 EYMEKHTVSKLIGS----P-PGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSK-GRTIDF 650 (821)
T ss_pred hccccccHHHhcCC----C-CcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCC-CcEEec
Confidence 001111111 0 010001 1122 22334579999999999999999999999999987644 433333
Q ss_pred ccceEEEeeeCCCCC---------ccCCCC------Cc---cc------ccCCChhhhccccEEEEec
Q 002353 640 QARCSVIAAANPVGG---------RYDSSK------TF---SE------NVELTDPIISRFDVLCVVK 683 (932)
Q Consensus 640 ~ar~sIIAAaNp~~G---------ry~~~~------~~---~~------ni~L~~~LLsRFDli~~l~ 683 (932)
.++.||.|+|.-.. .|.... .+ .. .-.+.+.|++|+|-++++.
T Consensus 651 -~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~ 717 (821)
T CHL00095 651 -KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFR 717 (821)
T ss_pred -CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeC
Confidence 47899999997421 011100 00 00 1137889999999888874
No 108
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.02 E-value=4.8e-09 Score=111.18 Aligned_cols=180 Identities=15% Similarity=0.173 Sum_probs=105.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcch-
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQD- 615 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~- 615 (932)
+++|+|+||||||++|+++++.+... +.+..-+.+........ .+ + . . +...++++|||++.++...
T Consensus 40 ~lll~G~~G~GKT~la~~~~~~~~~~------~~~~~~i~~~~~~~~~~-~~-~-~-~--~~~~~lLvIDdi~~l~~~~~ 107 (226)
T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAAEER------GKSAIYLPLAELAQADP-EV-L-E-G--LEQADLVCLDDVEAIAGQPE 107 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc------CCcEEEEeHHHHHHhHH-HH-H-h-h--cccCCEEEEeChhhhcCChH
Confidence 89999999999999999999875421 00111111110000000 00 0 0 0 1234699999999998754
Q ss_pred -hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCC-hhhhcccc--EEEEecCCCChhHh
Q 002353 616 -RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELT-DPIISRFD--VLCVVKDVVDPVVD 691 (932)
Q Consensus 616 -~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~-~~LLsRFD--li~~l~D~~d~~~D 691 (932)
+..|..+++... . .+..+|.++|..... ..+. +.|.+||. ..+.+ ..++
T Consensus 108 ~~~~L~~~l~~~~----~--------~~~~iIits~~~~~~----------~~~~~~~L~~r~~~~~~i~l-~~l~---- 160 (226)
T TIGR03420 108 WQEALFHLYNRVR----E--------AGGRLLIAGRAAPAQ----------LPLRLPDLRTRLAWGLVFQL-PPLS---- 160 (226)
T ss_pred HHHHHHHHHHHHH----H--------cCCeEEEECCCChHH----------CCcccHHHHHHHhcCeeEec-CCCC----
Confidence 777887776321 0 112466777753311 1233 67788875 34444 1111
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHHHHHH
Q 002353 692 EMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTHVYAE 770 (932)
Q Consensus 692 ~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~Y~~ 770 (932)
.+.+..++. ++.+ ....+++++.+.|..
T Consensus 161 ----------------------------------------------~~e~~~~l~~~~~~-~~~~~~~~~l~~L~~---- 189 (226)
T TIGR03420 161 ----------------------------------------------DEEKIAALQSRAAR-RGLQLPDEVADYLLR---- 189 (226)
T ss_pred ----------------------------------------------HHHHHHHHHHHHHH-cCCCCCHHHHHHHHH----
Confidence 122222222 1222 245688888888877
Q ss_pred HHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 002353 771 LRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAI 816 (932)
Q Consensus 771 lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI 816 (932)
.|+.++|+|..++..+.+.|.-..+ .|+..-|.+++
T Consensus 190 ---------~~~gn~r~L~~~l~~~~~~~~~~~~-~i~~~~~~~~~ 225 (226)
T TIGR03420 190 ---------HGSRDMGSLMALLDALDRASLAAKR-KITIPFVKEVL 225 (226)
T ss_pred ---------hccCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHh
Confidence 4789999999999999887655544 68888887664
No 109
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.6e-09 Score=124.80 Aligned_cols=169 Identities=21% Similarity=0.229 Sum_probs=98.2
Q ss_pred cccChHHHHHHHhhhhhcCc---cccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCccccccccee
Q 002353 503 SIYGHEDIKTALALSMFGGQ---EKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAV 579 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~---~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v 579 (932)
+|.|++.+|+-+--++.=.. .+... ..+...-.|||+||||||||++||++|..+.-.+... + ...|...+
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r--~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv-k---gpEL~sk~ 508 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFAR--FGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV-K---GPELFSKY 508 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHH--hcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec-c---CHHHHHHh
Confidence 36789999998875543211 11111 1122233799999999999999999999887665432 1 12222222
Q ss_pred ecCcccchhhhccCceeccCCCeeeeccccccCcch-----------hhhHHHHHhhceeeeeccceeEeeccceEEEee
Q 002353 580 HKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQD-----------RVSIHEAMEQQSISISKAGIVTSLQARCSVIAA 648 (932)
Q Consensus 580 ~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~-----------~~~L~eamEqq~isi~kagi~~~l~ar~sIIAA 648 (932)
..+.......+--.|-..|. .|+|+||||.+.... .+.|+.-|+ |+.. ..++.||||
T Consensus 509 vGeSEr~ir~iF~kAR~~aP-~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmD---------G~e~--~k~V~ViAA 576 (693)
T KOG0730|consen 509 VGESERAIREVFRKARQVAP-CIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMD---------GLEA--LKNVLVIAA 576 (693)
T ss_pred cCchHHHHHHHHHHHhhcCC-eEEehhhHHhHhhccCCCccchHHHHHHHHHHHcc---------cccc--cCcEEEEec
Confidence 21111000000011222233 899999999886543 123333333 3221 246899999
Q ss_pred eCCCCCccCCCCCcccccCCChhhhc--cccEEEEecCCCChhHhHHHHHHHHhhccCCCC
Q 002353 649 ANPVGGRYDSSKTFSENVELTDPIIS--RFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQP 707 (932)
Q Consensus 649 aNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~ 707 (932)
||.+. .|+++||+ |||-++.+ +.||...- ..|++.|.+..|
T Consensus 577 TNRpd-------------~ID~ALlRPGRlD~iiyV-plPD~~aR----~~Ilk~~~kkmp 619 (693)
T KOG0730|consen 577 TNRPD-------------MIDPALLRPGRLDRIIYV-PLPDLEAR----LEILKQCAKKMP 619 (693)
T ss_pred cCChh-------------hcCHHHcCCcccceeEee-cCccHHHH----HHHHHHHHhcCC
Confidence 99987 89999999 99999998 44444332 234454444333
No 110
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.01 E-value=7.7e-09 Score=117.60 Aligned_cols=148 Identities=20% Similarity=0.331 Sum_probs=95.8
Q ss_pred CCCeeeeccccccCcc------------hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCccccc
Q 002353 599 DRGICLIDEFDKMNDQ------------DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENV 666 (932)
Q Consensus 599 d~GIl~IDE~dkm~~~------------~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni 666 (932)
..||+|||||||+... .|..|+..||--++++ |.|.+. ..++.+||+ |-|...++ .
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~-k~~~i~--T~~ILFI~~-----GAF~~~kp----~ 316 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVST-KYGMVK--TDHILFIAS-----GAFHVSKP----S 316 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeee-cceeEE--CCceeEEec-----CCcCCCCh----h
Confidence 8899999999998633 5778899998777665 333211 133555654 33433222 3
Q ss_pred CCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH
Q 002353 667 ELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT 746 (932)
Q Consensus 667 ~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~ 746 (932)
+|-|.|.-||.+++.+.. .+.+ -..+||. .| ...++++|..
T Consensus 317 DlIPEl~GR~Pi~v~L~~-L~~~----dL~~ILt-----eP-----------------------------~nsLikQy~~ 357 (443)
T PRK05201 317 DLIPELQGRFPIRVELDA-LTEE----DFVRILT-----EP-----------------------------KASLIKQYQA 357 (443)
T ss_pred hccHHHhCccceEEECCC-CCHH----HHHHHhc-----CC-----------------------------hhHHHHHHHH
Confidence 678999999999999832 2221 1223332 11 1358899988
Q ss_pred -HHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhh
Q 002353 747 -YAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMR 802 (932)
Q Consensus 747 -yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~ 802 (932)
|+-..+.-.|+++|.+.|++.-..+... .-.+..|.|.+++.-.-.-+...
T Consensus 358 Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~-----~~~iGAR~LrtI~E~~L~d~~Fe 409 (443)
T PRK05201 358 LLATEGVTLEFTDDAIRRIAEIAYQVNEK-----TENIGARRLHTVMEKLLEDISFE 409 (443)
T ss_pred HHhhcCcEEEEcHHHHHHHHHHHHHhccc-----ccccchhhHHHHHHHHHHHHhcc
Confidence 6656667789999999999876544222 22467899999987655544433
No 111
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.01 E-value=1.1e-08 Score=116.40 Aligned_cols=150 Identities=17% Similarity=0.309 Sum_probs=96.8
Q ss_pred cCCCeeeeccccccCcc------------hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccc
Q 002353 598 ADRGICLIDEFDKMNDQ------------DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSEN 665 (932)
Q Consensus 598 Ad~GIl~IDE~dkm~~~------------~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~n 665 (932)
+..||+|||||||+... .|..|+..||--++++ |.|.+. ..++.+||+. -|...++
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~-k~~~v~--T~~ILFI~~G-----AF~~~kp---- 313 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT-KYGMVK--TDHILFIAAG-----AFQLAKP---- 313 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee-cceeEE--CCceeEEecC-----CcCCCCh----
Confidence 57899999999998643 4778999999777665 443222 2345566543 3332222
Q ss_pred cCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHH
Q 002353 666 VELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYI 745 (932)
Q Consensus 666 i~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI 745 (932)
.+|-|.|.-||.+++.+... +. .-..+||. .| ...++++|.
T Consensus 314 ~DlIPEl~GR~Pi~v~L~~L-~~----edL~rILt-----eP-----------------------------~nsLikQy~ 354 (441)
T TIGR00390 314 SDLIPELQGRFPIRVELQAL-TT----DDFERILT-----EP-----------------------------KNSLIKQYK 354 (441)
T ss_pred hhccHHHhCccceEEECCCC-CH----HHHHHHhc-----CC-----------------------------hhHHHHHHH
Confidence 25789999999999998332 22 11223332 11 124789998
Q ss_pred H-HHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhC
Q 002353 746 T-YAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRL 803 (932)
Q Consensus 746 ~-yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~l 803 (932)
. +.-..+.-.|+++|...|++.-.++.... -.+.+|.|.+++.-.-.-+....
T Consensus 355 ~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~-----~~iGAR~LrtilE~~l~d~~fe~ 408 (441)
T TIGR00390 355 ALMKTEGVNIEFSDEAIKRIAELAYNVNEKT-----ENIGARRLHTVLERLLEDISFEA 408 (441)
T ss_pred HHHhhcCcEEEEeHHHHHHHHHHHHHhcccc-----cccchhhHHHHHHHHHHHHHhcC
Confidence 8 45555666899999999998866543332 23678999999876555554443
No 112
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.00 E-value=1.9e-08 Score=121.09 Aligned_cols=203 Identities=19% Similarity=0.213 Sum_probs=119.9
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCce-EEEeCCCCchHHHHHHHHHHhCCCcEE----ecCCCc-------
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDIN-VLLLGDPGTAKSQFLKYVEKTGQRAVY----TTGKGA------- 570 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~Rgdin-vLLvGdPGTGKS~Lak~va~~~~r~v~----~~g~~s------- 570 (932)
.|+||+.+++.|.-++-.|. + + | +||+|++|||||++|+.+++.+.-... .||.-.
T Consensus 17 divGQe~vv~~L~~~l~~~r---l---~------hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~ 84 (647)
T PRK07994 17 EVVGQEHVLTALANALDLGR---L---H------HAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQ 84 (647)
T ss_pred HhcCcHHHHHHHHHHHHcCC---C---C------eEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHc
Confidence 57799999998887777652 1 1 5 589999999999999999987643110 111110
Q ss_pred ----ccccccceeecCcccchh---hhccCc-e--eccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeec
Q 002353 571 ----SAVGLTAAVHKDPVTREW---TLEGGA-L--VLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQ 640 (932)
Q Consensus 571 ----s~~gLta~v~kd~~~g~~---~le~Ga-l--~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ 640 (932)
....+.++. .++.. .+.... . ......|++|||+++|+...+++|+..||.- +
T Consensus 85 g~~~D~ieidaas----~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP-------------p 147 (647)
T PRK07994 85 GRFVDLIEIDAAS----RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------P 147 (647)
T ss_pred CCCCCceeecccc----cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcC-------------C
Confidence 001111110 01100 000000 0 1123459999999999999999999999962 2
Q ss_pred cceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccch
Q 002353 641 ARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNES 720 (932)
Q Consensus 641 ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~ 720 (932)
..+.+|.+|+... .|.++++||+ ..|.+.
T Consensus 148 ~~v~FIL~Tt~~~-------------kLl~TI~SRC-~~~~f~------------------------------------- 176 (647)
T PRK07994 148 EHVKFLLATTDPQ-------------KLPVTILSRC-LQFHLK------------------------------------- 176 (647)
T ss_pred CCeEEEEecCCcc-------------ccchHHHhhh-eEeeCC-------------------------------------
Confidence 2344444454332 6888999997 333331
Q ss_pred hhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHH
Q 002353 721 EEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHAR 800 (932)
Q Consensus 721 ~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Ak 800 (932)
.++.+.+..|+...-..-...+++.+...|.++ ..+++|...+++..+.++
T Consensus 177 --------------~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~-------------s~Gs~R~Al~lldqaia~-- 227 (647)
T PRK07994 177 --------------ALDVEQIRQQLEHILQAEQIPFEPRALQLLARA-------------ADGSMRDALSLTDQAIAS-- 227 (647)
T ss_pred --------------CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHHHHHh--
Confidence 134455666665322111345677777777764 236788888877544332
Q ss_pred hhCCCCcCHHHHHHHH
Q 002353 801 MRLRQHVTQEDVNMAI 816 (932)
Q Consensus 801 l~lr~~Vt~~Dv~~AI 816 (932)
....|+.++|...+
T Consensus 228 --~~~~it~~~v~~~l 241 (647)
T PRK07994 228 --GNGQVTTDDVSAML 241 (647)
T ss_pred --cCCCcCHHHHHHHH
Confidence 23457777776654
No 113
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.00 E-value=2.9e-09 Score=136.06 Aligned_cols=201 Identities=11% Similarity=0.106 Sum_probs=113.8
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCccccccc-----------c---------eeecCcccc--h------
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLT-----------A---------AVHKDPVTR--E------ 587 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLt-----------a---------~v~kd~~~g--~------ 587 (932)
-.|||+||||||||.|||++|..+..+++... ++..++-. + .+.++-.+. +
T Consensus 1631 KGILLiGPPGTGKTlLAKALA~es~VPFIsIS-gs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~~ 1709 (2281)
T CHL00206 1631 RGILVIGSIGTGRSYLVKYLATNSYVPFITVF-LNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALT 1709 (2281)
T ss_pred CceEEECCCCCCHHHHHHHHHHhcCCceEEEE-HHHHhhcccccccccccccccccccccccccccccchhhhhhcchhh
Confidence 37999999999999999999999888776531 11111000 0 000000000 0
Q ss_pred --hhhccCc------eecc---CCCeeeeccccccCcchh-----hhHHHHHhhceeeeeccceeEeeccceEEEeeeCC
Q 002353 588 --WTLEGGA------LVLA---DRGICLIDEFDKMNDQDR-----VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANP 651 (932)
Q Consensus 588 --~~le~Ga------l~lA---d~GIl~IDE~dkm~~~~~-----~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp 651 (932)
.....|+ +.+| .-+|++|||||.+...+. ..|+..|.... ...-...+.||||||.
T Consensus 1710 ~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~--------~~~s~~~VIVIAATNR 1781 (2281)
T CHL00206 1710 MDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDC--------ERCSTRNILVIASTHI 1781 (2281)
T ss_pred hhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccc--------ccCCCCCEEEEEeCCC
Confidence 0001122 3333 247999999999987542 22333343110 0011235789999999
Q ss_pred CCCccCCCCCcccccCCChhhhc--cccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcc
Q 002353 652 VGGRYDSSKTFSENVELTDPIIS--RFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADR 729 (932)
Q Consensus 652 ~~Gry~~~~~~~~ni~L~~~LLs--RFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (932)
+. .|++||++ |||-.+.| +.|+....+++.. ++ .|.+..+..
T Consensus 1782 PD-------------~LDPALLRPGRFDR~I~I-r~Pd~p~R~kiL~-IL-l~tkg~~L~-------------------- 1825 (2281)
T CHL00206 1782 PQ-------------KVDPALIAPNKLNTCIKI-RRLLIPQQRKHFF-TL-SYTRGFHLE-------------------- 1825 (2281)
T ss_pred cc-------------cCCHhHcCCCCCCeEEEe-CCCCchhHHHHHH-HH-HhhcCCCCC--------------------
Confidence 77 89999998 99999987 3333322222211 11 111111100
Q ss_pred cCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCH
Q 002353 730 EIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQ 809 (932)
Q Consensus 730 ~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~ 809 (932)
....+ + -..|+. +...+.+.|.+|+.-|...|--+.+..|+.
T Consensus 1826 ---~~~vd---l---~~LA~~-----------------------------T~GfSGADLanLvNEAaliAirq~ks~Id~ 1867 (2281)
T CHL00206 1826 ---KKMFH---T---NGFGSI-----------------------------TMGSNARDLVALTNEALSISITQKKSIIDT 1867 (2281)
T ss_pred ---ccccc---H---HHHHHh-----------------------------CCCCCHHHHHHHHHHHHHHHHHcCCCccCH
Confidence 00000 0 011221 334578888888888888888888888999
Q ss_pred HHHHHHHHHH
Q 002353 810 EDVNMAIRVL 819 (932)
Q Consensus 810 ~Dv~~AI~l~ 819 (932)
.|+..|+.-.
T Consensus 1868 ~~I~~Al~Rq 1877 (2281)
T CHL00206 1868 NTIRSALHRQ 1877 (2281)
T ss_pred HHHHHHHHHH
Confidence 9988887654
No 114
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=3e-09 Score=114.77 Aligned_cols=155 Identities=19% Similarity=0.236 Sum_probs=98.6
Q ss_pred HHHHhhcccccChHHHHHHHhhhhhcCccccccCcc---cccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecC-CCc
Q 002353 495 RIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKH---RLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTG-KGA 570 (932)
Q Consensus 495 ~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~---~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g-~~s 570 (932)
.|.+.+---+.||+..|+.+..|......+-..... --=+..||||+||+|+|||.||+.+|+++..++-... ...
T Consensus 54 eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtL 133 (408)
T COG1219 54 EIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTL 133 (408)
T ss_pred HHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccch
Confidence 344555566889999999999887765432111100 0123459999999999999999999999887755421 111
Q ss_pred ccccccceeecCcccch-hhhc--cCceeccCCCeeeeccccccCcc--------------hhhhHHHHHhhceeeeecc
Q 002353 571 SAVGLTAAVHKDPVTRE-WTLE--GGALVLADRGICLIDEFDKMNDQ--------------DRVSIHEAMEQQSISISKA 633 (932)
Q Consensus 571 s~~gLta~v~kd~~~g~-~~le--~Gal~lAd~GIl~IDE~dkm~~~--------------~~~~L~eamEqq~isi~ka 633 (932)
+-+|..+- |-.+=- ..+. -.....|.+||++||||||+... .|.+|+..||--..++...
T Consensus 134 TEAGYVGE---DVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPq 210 (408)
T COG1219 134 TEAGYVGE---DVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQ 210 (408)
T ss_pred hhccccch---hHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCC
Confidence 22222211 110000 0111 23455788999999999998543 4789999999777778766
Q ss_pred ceeEeeccceEEEeeeCCC
Q 002353 634 GIVTSLQARCSVIAAANPV 652 (932)
Q Consensus 634 gi~~~l~ar~sIIAAaNp~ 652 (932)
|....-+-.+.-|-|+|..
T Consensus 211 GGRKHP~Qe~iqvDT~NIL 229 (408)
T COG1219 211 GGRKHPQQEFIQVDTSNIL 229 (408)
T ss_pred CCCCCCccceEEEccccee
Confidence 6554444556666666653
No 115
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.97 E-value=1.2e-08 Score=128.06 Aligned_cols=176 Identities=18% Similarity=0.209 Sum_probs=105.8
Q ss_pred HHHHHHhhcccccChHHHHHHHhhhhh----cCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCc---EEe
Q 002353 493 GERIIKSIAPSIYGHEDIKTALALSMF----GGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRA---VYT 565 (932)
Q Consensus 493 ~~~l~~siap~I~G~~~vK~aillaL~----gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~---v~~ 565 (932)
+..+-..+...|+|++.+...+.-++. |....+ |.--++||+||||||||.+|+++++.+... +..
T Consensus 559 l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~-------~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~ 631 (857)
T PRK10865 559 LLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPN-------RPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVR 631 (857)
T ss_pred HHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCC-------CCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEE
Confidence 456777888899999987777666554 221111 111179999999999999999999976422 211
Q ss_pred cCCC-----cccccccceeecCcccchhh-hccC----ceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccce
Q 002353 566 TGKG-----ASAVGLTAAVHKDPVTREWT-LEGG----ALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGI 635 (932)
Q Consensus 566 ~g~~-----ss~~gLta~v~kd~~~g~~~-le~G----al~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi 635 (932)
.... .+...|.++. .|... .+.| ++.....+|++|||++++++..+..|+++|+.|.++-. .|.
T Consensus 632 id~se~~~~~~~~~LiG~~-----pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~-~gr 705 (857)
T PRK10865 632 IDMSEFMEKHSVSRLVGAP-----PGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDG-QGR 705 (857)
T ss_pred EEhHHhhhhhhHHHHhCCC-----CcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecC-Cce
Confidence 1000 0001111110 00000 0111 22223568999999999999999999999999987642 232
Q ss_pred eEeeccceEEEeeeCCCCCc----cCCCCCc---------ccccCCChhhhccccEEEEec
Q 002353 636 VTSLQARCSVIAAANPVGGR----YDSSKTF---------SENVELTDPIISRFDVLCVVK 683 (932)
Q Consensus 636 ~~~l~ar~sIIAAaNp~~Gr----y~~~~~~---------~~ni~L~~~LLsRFDli~~l~ 683 (932)
...+ .++.||+|||..... +.. ..+ ...-.+.++|++|+|.++++.
T Consensus 706 ~vd~-rn~iiI~TSN~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~ 764 (857)
T PRK10865 706 TVDF-RNTVVIMTSNLGSDLIQERFGE-LDYAHMKELVLGVVSHNFRPEFINRIDEVVVFH 764 (857)
T ss_pred EEee-cccEEEEeCCcchHHHHHhccc-cchHHHHHHHHHHHcccccHHHHHhCCeeEecC
Confidence 2222 246789999974211 110 000 112357899999999888873
No 116
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=8.2e-09 Score=124.82 Aligned_cols=177 Identities=16% Similarity=0.183 Sum_probs=111.6
Q ss_pred hHHHHHHhhcccccChHHHHHHHhhhh----hcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCC---cEE
Q 002353 492 IGERIIKSIAPSIYGHEDIKTALALSM----FGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQR---AVY 564 (932)
Q Consensus 492 i~~~l~~siap~I~G~~~vK~aillaL----~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r---~v~ 564 (932)
....+-+.+...|+||+.+-.++.-++ .|-...+.+. | ..||+||+|+|||.|++++|..+.. ++.
T Consensus 481 kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPi-----g--sFlF~GPTGVGKTELAkaLA~~Lfg~e~ali 553 (786)
T COG0542 481 KLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPI-----G--SFLFLGPTGVGKTELAKALAEALFGDEQALI 553 (786)
T ss_pred HHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCc-----e--EEEeeCCCcccHHHHHHHHHHHhcCCCccce
Confidence 345677888999999998877776554 3432222222 2 8999999999999999999998652 222
Q ss_pred ecCC-----CcccccccceeecCcccchh-hhccCceecc----CCCeeeeccccccCcchhhhHHHHHhhceeeeeccc
Q 002353 565 TTGK-----GASAVGLTAAVHKDPVTREW-TLEGGALVLA----DRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAG 634 (932)
Q Consensus 565 ~~g~-----~ss~~gLta~v~kd~~~g~~-~le~Gal~lA----d~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kag 634 (932)
.... ..|...|.++- .|.. .-++|.|.-| ...|+++|||+|..++..+.|+++|++|.++-.++.
T Consensus 554 R~DMSEy~EkHsVSrLIGaP-----PGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr 628 (786)
T COG0542 554 RIDMSEYMEKHSVSRLIGAP-----PGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGR 628 (786)
T ss_pred eechHHHHHHHHHHHHhCCC-----CCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCC
Confidence 1100 01111222211 1111 1235555544 347999999999999999999999999998865543
Q ss_pred eeEeeccceEEEeeeCCCCCccCCCC---------Cc------ccccCCChhhhccccEEEEe
Q 002353 635 IVTSLQARCSVIAAANPVGGRYDSSK---------TF------SENVELTDPIISRFDVLCVV 682 (932)
Q Consensus 635 i~~~l~ar~sIIAAaNp~~Gry~~~~---------~~------~~ni~L~~~LLsRFDli~~l 682 (932)
.+- =.++.||.|+|--........ .. .-.-.+.|.+|.|+|-++++
T Consensus 629 ~Vd--FrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F 689 (786)
T COG0542 629 TVD--FRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPF 689 (786)
T ss_pred EEe--cceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEec
Confidence 222 234678888886321111110 00 11246889999999977776
No 117
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.9e-09 Score=126.46 Aligned_cols=203 Identities=25% Similarity=0.302 Sum_probs=113.6
Q ss_pred cCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceec---cCCCeeeecccc
Q 002353 533 RGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVL---ADRGICLIDEFD 609 (932)
Q Consensus 533 RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~l---Ad~GIl~IDE~d 609 (932)
+..-.+||+||||||||.+|++++..+...++.. .++ .++.......... + ...+.. ...+|+||||+|
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v-~~~---~l~sk~vGesek~---i-r~~F~~A~~~~p~iiFiDEiD 345 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISV-KGS---ELLSKWVGESEKN---I-RELFEKARKLAPSIIFIDEID 345 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEe-eCH---HHhccccchHHHH---H-HHHHHHHHcCCCcEEEEEchh
Confidence 3334899999999999999999999876665542 111 1221111110000 0 001111 235899999999
Q ss_pred ccCcchhhhH----HHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEEEEec
Q 002353 610 KMNDQDRVSI----HEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLCVVK 683 (932)
Q Consensus 610 km~~~~~~~L----~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~~l~ 683 (932)
++-......- ..++.+.-.. ..|+ .-..++.||||||.+. .+++++++ |||-++.+
T Consensus 346 s~~~~r~~~~~~~~~r~~~~lL~~--~d~~--e~~~~v~vi~aTN~p~-------------~ld~a~lR~gRfd~~i~v- 407 (494)
T COG0464 346 SLASGRGPSEDGSGRRVVGQLLTE--LDGI--EKAEGVLVIAATNRPD-------------DLDPALLRPGRFDRLIYV- 407 (494)
T ss_pred hhhccCCCCCchHHHHHHHHHHHH--hcCC--CccCceEEEecCCCcc-------------ccCHhhcccCccceEeec-
Confidence 9865532211 1122111100 0111 1123477999999987 89999999 99999998
Q ss_pred CCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHH
Q 002353 684 DVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEK 763 (932)
Q Consensus 684 D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~ 763 (932)
+.|+......+.++ |...... .+..+. ..+.
T Consensus 408 ~~pd~~~r~~i~~~----~~~~~~~--------------------------~~~~~~-------------------~~~~ 438 (494)
T COG0464 408 PLPDLEERLEIFKI----HLRDKKP--------------------------PLAEDV-------------------DLEE 438 (494)
T ss_pred CCCCHHHHHHHHHH----HhcccCC--------------------------cchhhh-------------------hHHH
Confidence 45555444443332 2221110 000111 1111
Q ss_pred HHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhC-CCCcCHHHHHHHHHHHHhh
Q 002353 764 LTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRL-RQHVTQEDVNMAIRVLLDS 822 (932)
Q Consensus 764 L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~l-r~~Vt~~Dv~~AI~l~~~S 822 (932)
|.+. .-..+...++.+++-|.-.|.... +..|+.+|+..|+.-..-|
T Consensus 439 l~~~------------t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 439 LAEI------------TEGYSGADIAALVREAALEALREARRREVTLDDFLDALKKIKPS 486 (494)
T ss_pred HHHH------------hcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhcCCC
Confidence 1110 111467778888887777777666 7889999999998764433
No 118
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.95 E-value=4.5e-09 Score=117.81 Aligned_cols=100 Identities=18% Similarity=0.182 Sum_probs=73.4
Q ss_pred cCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChh
Q 002353 592 GGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDP 671 (932)
Q Consensus 592 ~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~ 671 (932)
.|.|..|++||+.++|+.|.+.+.+..|+.+++++.+.+. |....++.+..|||++|+.. |.. +. |....+|
T Consensus 229 ~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~--~~~~~~~~d~liia~sNe~e--~~~---~~-~~k~~ea 300 (361)
T smart00763 229 DGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGT--GGFAMIPIDGLIIAHSNESE--WQR---FK-SNKKNEA 300 (361)
T ss_pred cCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecC--CcccccccceEEEEeCCHHH--Hhh---hh-ccccchh
Confidence 4899999999999999999999999999999999998763 33446778889999999853 211 11 2244799
Q ss_pred hhccccEEEEecCCCChhHhHHHHHHHHh
Q 002353 672 IISRFDVLCVVKDVVDPVVDEMLAKFVID 700 (932)
Q Consensus 672 LLsRFDli~~l~D~~d~~~D~~La~~vl~ 700 (932)
|++||.++.+ .=..+-....+|.+..+.
T Consensus 301 f~dR~~~i~v-pY~l~~~~E~~Iy~k~~~ 328 (361)
T smart00763 301 LLDRIIKVKV-PYCLRVSEEAQIYEKLLR 328 (361)
T ss_pred hhhceEEEeC-CCcCCHHHHHHHHHHHhc
Confidence 9999996554 222233444566666555
No 119
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.94 E-value=2.8e-09 Score=102.80 Aligned_cols=145 Identities=21% Similarity=0.183 Sum_probs=87.4
Q ss_pred ChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCC---CcEEecCCCcccccccceeecC
Q 002353 506 GHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQ---RAVYTTGKGASAVGLTAAVHKD 582 (932)
Q Consensus 506 G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~---r~v~~~g~~ss~~gLta~v~kd 582 (932)
|++.+...+...+.... + .+++|+|+||||||++++.+++.+. ..++..................
T Consensus 2 ~~~~~~~~i~~~~~~~~------~------~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 69 (151)
T cd00009 2 GQEEAIEALREALELPP------P------KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG 69 (151)
T ss_pred chHHHHHHHHHHHhCCC------C------CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhh
Confidence 55666666666655421 1 1899999999999999999998863 2222111100000000000000
Q ss_pred cccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCc
Q 002353 583 PVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTF 662 (932)
Q Consensus 583 ~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~ 662 (932)
.. .+............++++|||++.+.......++..|+...... ..+.++.+|+++|+...
T Consensus 70 ~~--~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~ii~~~~~~~~-------- 132 (151)
T cd00009 70 HF--LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-------IDRENVRVIGATNRPLL-------- 132 (151)
T ss_pred hh--hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-------ccCCCeEEEEecCcccc--------
Confidence 00 00111122234467899999999997777778888888654321 33567899999998652
Q ss_pred ccccCCChhhhccccEEEEe
Q 002353 663 SENVELTDPIISRFDVLCVV 682 (932)
Q Consensus 663 ~~ni~L~~~LLsRFDli~~l 682 (932)
..+..++.+||+..+.+
T Consensus 133 ---~~~~~~~~~r~~~~i~~ 149 (151)
T cd00009 133 ---GDLDRALYDRLDIRIVI 149 (151)
T ss_pred ---CCcChhHHhhhccEeec
Confidence 36778899999866654
No 120
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.94 E-value=4.9e-09 Score=123.16 Aligned_cols=138 Identities=19% Similarity=0.201 Sum_probs=78.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCC-CcccccccceeecCcccchhh--hc---cCceecc---CCCeeeecc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGK-GASAVGLTAAVHKDPVTREWT--LE---GGALVLA---DRGICLIDE 607 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~-~ss~~gLta~v~kd~~~g~~~--le---~Gal~lA---d~GIl~IDE 607 (932)
++||+||||||||++++++++.+...++.... ......+.+........|+.. +. ..+...+ ...|+||||
T Consensus 218 GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDE 297 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDE 297 (512)
T ss_pred ceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEeh
Confidence 79999999999999999999987654332100 000001000000000001100 00 0011111 246999999
Q ss_pred ccccCcchh------------hhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc-
Q 002353 608 FDKMNDQDR------------VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS- 674 (932)
Q Consensus 608 ~dkm~~~~~------------~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs- 674 (932)
+|.+-.... ..|+..|+ |.. -..++.||+|||... .|+++|++
T Consensus 298 iD~L~~~R~~~~s~d~e~~il~~LL~~LD---------gl~--~~~~ViVI~ATN~~d-------------~LDpALlRp 353 (512)
T TIGR03689 298 MDSIFRTRGSGVSSDVETTVVPQLLSELD---------GVE--SLDNVIVIGASNRED-------------MIDPAILRP 353 (512)
T ss_pred hhhhhcccCCCccchHHHHHHHHHHHHhc---------ccc--cCCceEEEeccCChh-------------hCCHhhcCc
Confidence 998743211 12333332 111 123578999999976 79999998
Q ss_pred -cccEEEEecCCCChhHhHHHHHHHH
Q 002353 675 -RFDVLCVVKDVVDPVVDEMLAKFVI 699 (932)
Q Consensus 675 -RFDli~~l~D~~d~~~D~~La~~vl 699 (932)
|||..+.+ +.|+...-..|.++.+
T Consensus 354 GRfD~~I~~-~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 354 GRLDVKIRI-ERPDAEAAADIFSKYL 378 (512)
T ss_pred cccceEEEe-CCCCHHHHHHHHHHHh
Confidence 99999887 6777666665555443
No 121
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.94 E-value=3.4e-08 Score=111.06 Aligned_cols=205 Identities=18% Similarity=0.182 Sum_probs=115.2
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCc------EEecCCCccccccc
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRA------VYTTGKGASAVGLT 576 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~------v~~~g~~ss~~gLt 576 (932)
.+.|++.++..+.-++-.+. . -|+||+||||||||++|+++++.+... ++.+...... ...
T Consensus 16 ~~~g~~~~~~~L~~~~~~~~---~---------~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~-~~~ 82 (337)
T PRK12402 16 DILGQDEVVERLSRAVDSPN---L---------PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFD-QGK 82 (337)
T ss_pred HhcCCHHHHHHHHHHHhCCC---C---------ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhh-cch
Confidence 45688888888766554431 0 189999999999999999998875321 1111100000 000
Q ss_pred ceeecCcc---------------cchhh----hccCce-eccCCCeeeeccccccCcchhhhHHHHHhhceeeeecccee
Q 002353 577 AAVHKDPV---------------TREWT----LEGGAL-VLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIV 636 (932)
Q Consensus 577 a~v~kd~~---------------~g~~~----le~Gal-~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~ 636 (932)
.....++. ...+. ...+.. ..++.++++|||++.++...+..|+..|+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~--------- 153 (337)
T PRK12402 83 KYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS--------- 153 (337)
T ss_pred hhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc---------
Confidence 00000000 00000 000111 12456799999999999888888988887531
Q ss_pred EeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCC
Q 002353 637 TSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKS 716 (932)
Q Consensus 637 ~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~ 716 (932)
..+.+|.++|... .+.++|.+|+..+.+- .
T Consensus 154 ----~~~~~Il~~~~~~-------------~~~~~L~sr~~~v~~~--~------------------------------- 183 (337)
T PRK12402 154 ----RTCRFIIATRQPS-------------KLIPPIRSRCLPLFFR--A------------------------------- 183 (337)
T ss_pred ----CCCeEEEEeCChh-------------hCchhhcCCceEEEec--C-------------------------------
Confidence 2244555554322 3556788887443321 1
Q ss_pred ccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHH
Q 002353 717 KNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMS 795 (932)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlA 795 (932)
++.+.+..++. .+++ -...+++++.+.|.++ .++++|.+.+.+..
T Consensus 184 -------------------~~~~~~~~~l~~~~~~-~~~~~~~~al~~l~~~-------------~~gdlr~l~~~l~~- 229 (337)
T PRK12402 184 -------------------PTDDELVDVLESIAEA-EGVDYDDDGLELIAYY-------------AGGDLRKAILTLQT- 229 (337)
T ss_pred -------------------CCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHH-
Confidence 22333444444 2332 2445888888888875 25778887665543
Q ss_pred HHHHHhhCCCCcCHHHHHHHHH
Q 002353 796 EAHARMRLRQHVTQEDVNMAIR 817 (932)
Q Consensus 796 eA~Akl~lr~~Vt~~Dv~~AI~ 817 (932)
.+ .....||.+||..++.
T Consensus 230 --~~--~~~~~It~~~v~~~~~ 247 (337)
T PRK12402 230 --AA--LAAGEITMEAAYEALG 247 (337)
T ss_pred --HH--HcCCCCCHHHHHHHhC
Confidence 22 2245799999987654
No 122
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.93 E-value=1e-08 Score=128.16 Aligned_cols=207 Identities=15% Similarity=0.133 Sum_probs=122.1
Q ss_pred cccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEe-cCCCcccc-----c
Q 002353 501 APSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYT-TGKGASAV-----G 574 (932)
Q Consensus 501 ap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~-~g~~ss~~-----g 574 (932)
...++|++..-..++-.|..+. .-|++|+||||||||.+++.+++........ .-.+.... .
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~------------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~ 253 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRR------------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL 253 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCC------------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh
Confidence 3457788887666665555432 1189999999999999999999876432110 00111111 1
Q ss_pred ccceeecCcccchhhhccC-cee----ccCCCeeeeccccccCc-----chhh---hHHHHHhhceeeeeccceeEeecc
Q 002353 575 LTAAVHKDPVTREWTLEGG-ALV----LADRGICLIDEFDKMND-----QDRV---SIHEAMEQQSISISKAGIVTSLQA 641 (932)
Q Consensus 575 Lta~v~kd~~~g~~~le~G-al~----lAd~GIl~IDE~dkm~~-----~~~~---~L~eamEqq~isi~kagi~~~l~a 641 (932)
+.++. ..-|+|.-.-. .+. ...+.|+||||++.+.. ..+. .|..+|+.|.
T Consensus 254 l~ag~---~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~-------------- 316 (852)
T TIGR03345 254 LQAGA---SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGE-------------- 316 (852)
T ss_pred hhccc---ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCC--------------
Confidence 11111 11233322110 111 11356999999999964 1222 3556666554
Q ss_pred ceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchh
Q 002353 642 RCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESE 721 (932)
Q Consensus 642 r~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~ 721 (932)
..+|+||++.. | ...+.++++|.+||..+.+ ..|+.+.-..+.+.+...+..+|.
T Consensus 317 -l~~IgaTT~~e--~------~~~~~~d~AL~rRf~~i~v--~eps~~~~~~iL~~~~~~~e~~~~-------------- 371 (852)
T TIGR03345 317 -LRTIAATTWAE--Y------KKYFEKDPALTRRFQVVKV--EEPDEETAIRMLRGLAPVLEKHHG-------------- 371 (852)
T ss_pred -eEEEEecCHHH--H------hhhhhccHHHHHhCeEEEe--CCCCHHHHHHHHHHHHHhhhhcCC--------------
Confidence 46799998742 1 1224789999999985444 556655555554444333222222
Q ss_pred hhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCC-cCChhHHHHHHHHHHHHHh
Q 002353 722 EDIQVADREIDPEILPQDLLKKYITYAKLNVFP-RLHDPDMEKLTHVYAELRR 773 (932)
Q Consensus 722 ~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P-~Ls~ea~~~L~~~Y~~lR~ 773 (932)
-.++.+.+...+.++.+++.- .|++.|.+.|-..-...|-
T Consensus 372 ------------v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~ 412 (852)
T TIGR03345 372 ------------VLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVAL 412 (852)
T ss_pred ------------CeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHH
Confidence 125778888888888877654 7899999999886665554
No 123
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.93 E-value=3.4e-08 Score=122.40 Aligned_cols=140 Identities=19% Similarity=0.217 Sum_probs=84.1
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCce-EEEeCCCCchHHHHHHHHHHhCCCc----EEecCCCcc------
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDIN-VLLLGDPGTAKSQFLKYVEKTGQRA----VYTTGKGAS------ 571 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~Rgdin-vLLvGdPGTGKS~Lak~va~~~~r~----v~~~g~~ss------ 571 (932)
.|+||+.+++.|.-++..+. + + | +||+|++|||||++++.+++.+.=. ...||.-.+
T Consensus 16 eiiGqe~v~~~L~~~i~~~r---i---~------Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGR---I---N------HAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAP 83 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCC---C---C------ceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHc
Confidence 56799999999888877652 1 1 5 7999999999999999999876310 011221101
Q ss_pred -------cccccceeecCcccchhhhcc---CceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeecc
Q 002353 572 -------AVGLTAAVHKDPVTREWTLEG---GALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQA 641 (932)
Q Consensus 572 -------~~gLta~v~kd~~~g~~~le~---Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~a 641 (932)
...+.++... .......+.. -.-......|++|||+++|+...+++|+..||+- +.
T Consensus 84 g~~~~~dv~eidaas~~-~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp-------------P~ 149 (824)
T PRK07764 84 GGPGSLDVTEIDAASHG-GVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP-------------PE 149 (824)
T ss_pred CCCCCCcEEEecccccC-CHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC-------------CC
Confidence 0111110000 0000000100 0012345679999999999999999999999952 23
Q ss_pred ceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEE
Q 002353 642 RCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCV 681 (932)
Q Consensus 642 r~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~ 681 (932)
.+.+|.+||... .|..+|.||+-++-+
T Consensus 150 ~~~fIl~tt~~~-------------kLl~TIrSRc~~v~F 176 (824)
T PRK07764 150 HLKFIFATTEPD-------------KVIGTIRSRTHHYPF 176 (824)
T ss_pred CeEEEEEeCChh-------------hhhHHHHhheeEEEe
Confidence 345555554332 477889999865544
No 124
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.92 E-value=5.3e-09 Score=129.82 Aligned_cols=159 Identities=25% Similarity=0.304 Sum_probs=90.7
Q ss_pred cccChHHHHHHHhhhhhcCccc-cccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeec
Q 002353 503 SIYGHEDIKTALALSMFGGQEK-NVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHK 581 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k-~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~k 581 (932)
.|.|++.+|..|.-.+.-.... ..-....++..-++||+||||||||++|+++++.+...++.. .++ .+......
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v-~~~---~l~~~~vG 529 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAV-RGP---EILSKWVG 529 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE-ehH---HHhhcccC
Confidence 4679999988876554321100 000011123333799999999999999999999887655432 111 11111100
Q ss_pred CcccchhhhccCcee---ccCCCeeeeccccccCcchh------------hhHHHHHhhceeeeeccceeEeeccceEEE
Q 002353 582 DPVTREWTLEGGALV---LADRGICLIDEFDKMNDQDR------------VSIHEAMEQQSISISKAGIVTSLQARCSVI 646 (932)
Q Consensus 582 d~~~g~~~le~Gal~---lAd~GIl~IDE~dkm~~~~~------------~~L~eamEqq~isi~kagi~~~l~ar~sII 646 (932)
. .+..+. -.+. ....+|+||||+|.+.+... +.|+..|+ |+ .-..++.||
T Consensus 530 e---se~~i~-~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ld---------g~--~~~~~v~vI 594 (733)
T TIGR01243 530 E---SEKAIR-EIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMD---------GI--QELSNVVVI 594 (733)
T ss_pred c---HHHHHH-HHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhh---------cc--cCCCCEEEE
Confidence 0 000010 0111 12347999999998853211 12333333 11 113467899
Q ss_pred eeeCCCCCccCCCCCcccccCCChhhhc--cccEEEEecCCCChhHhHHH
Q 002353 647 AAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLCVVKDVVDPVVDEML 694 (932)
Q Consensus 647 AAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~~l~D~~d~~~D~~L 694 (932)
||||... .|++++++ |||.++.+ ..|+...-..|
T Consensus 595 ~aTn~~~-------------~ld~allRpgRfd~~i~v-~~Pd~~~R~~i 630 (733)
T TIGR01243 595 AATNRPD-------------ILDPALLRPGRFDRLILV-PPPDEEARKEI 630 (733)
T ss_pred EeCCChh-------------hCCHhhcCCCccceEEEe-CCcCHHHHHHH
Confidence 9999876 79999996 99999887 55555444443
No 125
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.92 E-value=1.4e-09 Score=104.49 Aligned_cols=118 Identities=21% Similarity=0.269 Sum_probs=74.0
Q ss_pred EEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcch--
Q 002353 538 VLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQD-- 615 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~-- 615 (932)
|||+||||||||++++.+++.+...++........ +-......... ..+.-++ -..+..+|++|||+|.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~-~~~~~~~~~~i-~~~~~~~--~~~~~~~vl~iDe~d~l~~~~~~ 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI-SSYAGDSEQKI-RDFFKKA--KKSAKPCVLFIDEIDKLFPKSQP 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH-TSSTTHHHHHH-HHHHHHH--HHTSTSEEEEEETGGGTSHHCST
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc-ccccccccccc-ccccccc--cccccceeeeeccchhccccccc
Confidence 79999999999999999999987655432111110 00000000000 0000011 001125899999999998876
Q ss_pred ---------hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhh-ccccEEEEe
Q 002353 616 ---------RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPII-SRFDVLCVV 682 (932)
Q Consensus 616 ---------~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LL-sRFDli~~l 682 (932)
...|...|+...- .+.++.||++||... .++++++ +||+..+.+
T Consensus 77 ~~~~~~~~~~~~L~~~l~~~~~----------~~~~~~vI~ttn~~~-------------~i~~~l~~~rf~~~i~~ 130 (132)
T PF00004_consen 77 SSSSFEQRLLNQLLSLLDNPSS----------KNSRVIVIATTNSPD-------------KIDPALLRSRFDRRIEF 130 (132)
T ss_dssp SSSHHHHHHHHHHHHHHHTTTT----------TSSSEEEEEEESSGG-------------GSCHHHHSTTSEEEEEE
T ss_pred ccccccccccceeeeccccccc----------ccccceeEEeeCChh-------------hCCHhHHhCCCcEEEEc
Confidence 4556666654320 145689999999854 7999999 999999876
No 126
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.92 E-value=3.7e-08 Score=104.89 Aligned_cols=178 Identities=13% Similarity=0.157 Sum_probs=107.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcchh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDR 616 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~ 616 (932)
+++|+|+||||||+||+++++.+... +....-+++... .... -.....++++|||++.++...+
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~------~~~~~~i~~~~~----~~~~------~~~~~~~~liiDdi~~l~~~~~ 107 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYG------GRNARYLDAASP----LLAF------DFDPEAELYAVDDVERLDDAQQ 107 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhC------CCcEEEEehHHh----HHHH------hhcccCCEEEEeChhhcCchHH
Confidence 89999999999999999999864211 001111111100 0000 0123457999999999998888
Q ss_pred hhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhcccc--EEEEecCCCChhHhHHH
Q 002353 617 VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFD--VLCVVKDVVDPVVDEML 694 (932)
Q Consensus 617 ~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFD--li~~l~D~~d~~~D~~L 694 (932)
..|+.+++.-. .. ..+.+|.+++.... ...+.+.|.|||. +.+.+ ..++...+..
T Consensus 108 ~~L~~~~~~~~----~~-------~~~~vl~~~~~~~~----------~~~l~~~L~sr~~~~~~i~l-~pl~~~~~~~- 164 (227)
T PRK08903 108 IALFNLFNRVR----AH-------GQGALLVAGPAAPL----------ALPLREDLRTRLGWGLVYEL-KPLSDADKIA- 164 (227)
T ss_pred HHHHHHHHHHH----Hc-------CCcEEEEeCCCCHH----------hCCCCHHHHHHHhcCeEEEe-cCCCHHHHHH-
Confidence 88888886421 01 12234555543211 1145688899984 45555 2222211111
Q ss_pred HHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhc
Q 002353 695 AKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRE 774 (932)
Q Consensus 695 a~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~ 774 (932)
.|+++ +.+ ....+++++.+.|.+
T Consensus 165 ---------------------------------------------~l~~~---~~~-~~v~l~~~al~~L~~-------- 187 (227)
T PRK08903 165 ---------------------------------------------ALKAA---AAE-RGLQLADEVPDYLLT-------- 187 (227)
T ss_pred ---------------------------------------------HHHHH---HHH-cCCCCCHHHHHHHHH--------
Confidence 22221 222 246788888888886
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 002353 775 SSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAI 816 (932)
Q Consensus 775 ~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI 816 (932)
.|+.++|+|.++++.-.++|...- ..||...|.+++
T Consensus 188 -----~~~gn~~~l~~~l~~l~~~~~~~~-~~i~~~~~~~~l 223 (227)
T PRK08903 188 -----HFRRDMPSLMALLDALDRYSLEQK-RPVTLPLLREML 223 (227)
T ss_pred -----hccCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHH
Confidence 589999999999998766665443 578888877664
No 127
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=3.6e-08 Score=118.03 Aligned_cols=208 Identities=17% Similarity=0.145 Sum_probs=121.3
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCce-EEEeCCCCchHHHHHHHHHHhCCCc--E--EecCCCccccccc
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDIN-VLLLGDPGTAKSQFLKYVEKTGQRA--V--YTTGKGASAVGLT 576 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~Rgdin-vLLvGdPGTGKS~Lak~va~~~~r~--v--~~~g~~ss~~gLt 576 (932)
-.|.||+.+++.|.-++..|. ++ | +||+|++|||||++|+.+++.+.-. . ..+|.-.+-..+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r---~~---------ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR---IN---------HAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC---CC---------eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhh
Confidence 357899999999888877652 11 6 6999999999999999999865311 0 0111100000000
Q ss_pred ce-------eecCcc--cchhh---hc--c-CceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeecc
Q 002353 577 AA-------VHKDPV--TREWT---LE--G-GALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQA 641 (932)
Q Consensus 577 a~-------v~kd~~--~g~~~---le--~-Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~a 641 (932)
.+ +.-+.. .|.-. +. . -.-..+...|++|||++.|+...+++|+..||.- +.
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEp-------------p~ 147 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEP-------------PE 147 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcC-------------CC
Confidence 00 000100 01000 00 0 0012356779999999999999999999999952 22
Q ss_pred ceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchh
Q 002353 642 RCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESE 721 (932)
Q Consensus 642 r~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~ 721 (932)
.+.+|.+|+... .+.++|.||+-.+-+-
T Consensus 148 ~~~fIL~tte~~-------------kll~TI~SRc~~~~F~--------------------------------------- 175 (584)
T PRK14952 148 HLIFIFATTEPE-------------KVLPTIRSRTHHYPFR--------------------------------------- 175 (584)
T ss_pred CeEEEEEeCChH-------------hhHHHHHHhceEEEee---------------------------------------
Confidence 344444444322 6888999997433321
Q ss_pred hhhhhhcccCCCCCCCHHHHHHHHHH-HhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHH
Q 002353 722 EDIQVADREIDPEILPQDLLKKYITY-AKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHAR 800 (932)
Q Consensus 722 ~~~~~~~~~~~~~~i~~~~LrkyI~y-ar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Ak 800 (932)
.++...+.+|+.. ++. -.-.+++++...|.++ ..+++|...+++.-..+.
T Consensus 176 -------------~l~~~~i~~~L~~i~~~-egi~i~~~al~~Ia~~-------------s~GdlR~aln~Ldql~~~-- 226 (584)
T PRK14952 176 -------------LLPPRTMRALIARICEQ-EGVVVDDAVYPLVIRA-------------GGGSPRDTLSVLDQLLAG-- 226 (584)
T ss_pred -------------CCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHHHHhc--
Confidence 1334445555552 222 2345777777777664 125788777777654332
Q ss_pred hhCCCCcCHHHHHHHH
Q 002353 801 MRLRQHVTQEDVNMAI 816 (932)
Q Consensus 801 l~lr~~Vt~~Dv~~AI 816 (932)
.....||.++|...+
T Consensus 227 -~~~~~It~~~v~~ll 241 (584)
T PRK14952 227 -AADTHVTYQRALGLL 241 (584)
T ss_pred -cCCCCcCHHHHHHHH
Confidence 236678888887664
No 128
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=5.4e-08 Score=112.47 Aligned_cols=211 Identities=15% Similarity=0.149 Sum_probs=123.8
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcE-E-----------ecCCCc
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAV-Y-----------TTGKGA 570 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v-~-----------~~g~~s 570 (932)
.|+||+.+++.|.-++-.|. . .| .+||+||||+|||++|+.+++.+.-.. + .+|.-.
T Consensus 17 eiiGq~~~~~~L~~~~~~~~---~--~h------a~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~ 85 (397)
T PRK14955 17 DITAQEHITRTIQNSLRMGR---V--GH------GYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECE 85 (397)
T ss_pred hccChHHHHHHHHHHHHhCC---c--ce------eEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCH
Confidence 57899999998777766552 1 12 499999999999999999998753210 0 111100
Q ss_pred ccccccc----e-eecCc--ccc--h-hhh-cc--CceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeE
Q 002353 571 SAVGLTA----A-VHKDP--VTR--E-WTL-EG--GALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVT 637 (932)
Q Consensus 571 s~~gLta----~-v~kd~--~~g--~-~~l-e~--Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~ 637 (932)
+...+.. . ..-+. ..+ . ..+ +. -.-..++..|++|||++.|+...+..|+..||+-
T Consensus 86 ~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep----------- 154 (397)
T PRK14955 86 SCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEP----------- 154 (397)
T ss_pred HHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcC-----------
Confidence 0000000 0 00000 000 0 000 00 0012356679999999999998888999999842
Q ss_pred eeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCc
Q 002353 638 SLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSK 717 (932)
Q Consensus 638 ~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~ 717 (932)
+..+.+|.+++... .+.+++.+|+..+-+
T Consensus 155 --~~~t~~Il~t~~~~-------------kl~~tl~sR~~~v~f------------------------------------ 183 (397)
T PRK14955 155 --PPHAIFIFATTELH-------------KIPATIASRCQRFNF------------------------------------ 183 (397)
T ss_pred --CCCeEEEEEeCChH-------------HhHHHHHHHHHHhhc------------------------------------
Confidence 22334455554221 566677777742111
Q ss_pred cchhhhhhhhcccCCCCCCCHHHHHHHHHH-HhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHH
Q 002353 718 NESEEDIQVADREIDPEILPQDLLKKYITY-AKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSE 796 (932)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~i~~~~LrkyI~y-ar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAe 796 (932)
..++.+.+.+|+.. ++. -...+++++.+.|... ..+++|.+.+.+.-..
T Consensus 184 ----------------~~l~~~ei~~~l~~~~~~-~g~~i~~~al~~l~~~-------------s~g~lr~a~~~L~kl~ 233 (397)
T PRK14955 184 ----------------KRIPLEEIQQQLQGICEA-EGISVDADALQLIGRK-------------AQGSMRDAQSILDQVI 233 (397)
T ss_pred ----------------CCCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHHHH
Confidence 12455667777663 332 2456888888888875 2357888888777655
Q ss_pred HHHHh-hCCCCcCHHHHHHHH
Q 002353 797 AHARM-RLRQHVTQEDVNMAI 816 (932)
Q Consensus 797 A~Akl-~lr~~Vt~~Dv~~AI 816 (932)
+++.- .-...|+.+||..++
T Consensus 234 ~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 234 AFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HhccccCCCCccCHHHHHHHH
Confidence 55521 234589999988765
No 129
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3.3e-09 Score=122.25 Aligned_cols=168 Identities=18% Similarity=0.229 Sum_probs=102.4
Q ss_pred ccChHHHHHHHhhhhhcCccccc-cCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecC
Q 002353 504 IYGHEDIKTALALSMFGGQEKNV-KGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKD 582 (932)
Q Consensus 504 I~G~~~vK~aillaL~gg~~k~~-~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd 582 (932)
|.|.+.++..+-++++....+.- -...-++..-.|||+||||||||.|||++|+.+.-.+... +|.. |...++..
T Consensus 513 IGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisV-KGPE---LlNkYVGE 588 (802)
T KOG0733|consen 513 IGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISV-KGPE---LLNKYVGE 588 (802)
T ss_pred cccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEee-cCHH---HHHHHhhh
Confidence 56788999988888876543210 0112244556899999999999999999999886554432 3222 22211111
Q ss_pred cccchhhhccCceeccCCCeeeeccccccCcchh-----------hhHHHHHhhceeeeeccceeEeeccceEEEeeeCC
Q 002353 583 PVTREWTLEGGALVLADRGICLIDEFDKMNDQDR-----------VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANP 651 (932)
Q Consensus 583 ~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~-----------~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp 651 (932)
..-...++-.-|- .+.-+|+|+||||.|-+..- +.|+.-|+ |... ...+.||||||.
T Consensus 589 SErAVR~vFqRAR-~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElD---------Gl~~--R~gV~viaATNR 656 (802)
T KOG0733|consen 589 SERAVRQVFQRAR-ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELD---------GLEE--RRGVYVIAATNR 656 (802)
T ss_pred HHHHHHHHHHHhh-cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhc---------cccc--ccceEEEeecCC
Confidence 1000000000000 11337999999999866421 22333332 2211 234789999999
Q ss_pred CCCccCCCCCcccccCCChhhhc--cccEEEEecCCCChhHhHHHHHHHHhh
Q 002353 652 VGGRYDSSKTFSENVELTDPIIS--RFDVLCVVKDVVDPVVDEMLAKFVIDS 701 (932)
Q Consensus 652 ~~Gry~~~~~~~~ni~L~~~LLs--RFDli~~l~D~~d~~~D~~La~~vl~~ 701 (932)
+. .+++++|+ |||-+.++ +.|+......|.+-+.++
T Consensus 657 PD-------------iIDpAiLRPGRlDk~LyV-~lPn~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 657 PD-------------IIDPAILRPGRLDKLLYV-GLPNAEERVAILKTITKN 694 (802)
T ss_pred Cc-------------ccchhhcCCCccCceeee-cCCCHHHHHHHHHHHhcc
Confidence 76 78999998 99988887 777776666555554443
No 130
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=7.3e-08 Score=115.85 Aligned_cols=209 Identities=14% Similarity=0.153 Sum_probs=120.1
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCc-------E--EecCCC----
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRA-------V--YTTGKG---- 569 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~-------v--~~~g~~---- 569 (932)
+|+||+.+++.|.-++..+. + .| -+||+|++|||||++++.+++.+.-. . ..||.-
T Consensus 17 dviGQe~vv~~L~~~l~~~r---l--~h------a~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~ 85 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQR---L--HH------AYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACR 85 (618)
T ss_pred HhcCcHHHHHHHHHHHHcCC---C--Ce------EEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHH
Confidence 46799999998888877662 1 11 35999999999999999999875310 0 001110
Q ss_pred -------cccccccceeecCc-ccchhhhcc--CceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEee
Q 002353 570 -------ASAVGLTAAVHKDP-VTREWTLEG--GALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSL 639 (932)
Q Consensus 570 -------ss~~gLta~v~kd~-~~g~~~le~--Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l 639 (932)
.....+.++..... ...+ .++. -.-..+...|++|||++.|+...++.|+..||.-
T Consensus 86 ~i~~g~h~D~~eldaas~~~Vd~iRe-li~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP------------- 151 (618)
T PRK14951 86 DIDSGRFVDYTELDAASNRGVDEVQQ-LLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP------------- 151 (618)
T ss_pred HHHcCCCCceeecCcccccCHHHHHH-HHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccC-------------
Confidence 00111111100000 0000 0000 0001223469999999999999999999998852
Q ss_pred ccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccc
Q 002353 640 QARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNE 719 (932)
Q Consensus 640 ~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~ 719 (932)
+..+.+|.+|+-.. .+..+++||+- +|.+.
T Consensus 152 P~~~~fIL~Ttd~~-------------kil~TIlSRc~-~~~f~------------------------------------ 181 (618)
T PRK14951 152 PEYLKFVLATTDPQ-------------KVPVTVLSRCL-QFNLR------------------------------------ 181 (618)
T ss_pred CCCeEEEEEECCch-------------hhhHHHHHhce-eeecC------------------------------------
Confidence 23344554543322 46778999983 33331
Q ss_pred hhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHH
Q 002353 720 SEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHA 799 (932)
Q Consensus 720 ~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~A 799 (932)
.++.+.+.+|+...-..-.-.+++++...|.++ ..+++|.+.+++.-+.++
T Consensus 182 ---------------~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~-------------s~GslR~al~lLdq~ia~- 232 (618)
T PRK14951 182 ---------------PMAPETVLEHLTQVLAAENVPAEPQALRLLARA-------------ARGSMRDALSLTDQAIAF- 232 (618)
T ss_pred ---------------CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHHHHHh-
Confidence 133444555554221112335677777777764 236888888887544443
Q ss_pred HhhCCCCcCHHHHHHHHHH
Q 002353 800 RMRLRQHVTQEDVNMAIRV 818 (932)
Q Consensus 800 kl~lr~~Vt~~Dv~~AI~l 818 (932)
....|+.++|..++..
T Consensus 233 ---~~~~It~~~V~~~Lg~ 248 (618)
T PRK14951 233 ---GSGQLQEAAVRQMLGS 248 (618)
T ss_pred ---cCCCcCHHHHHHHHcC
Confidence 2567999988776543
No 131
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=5.3e-08 Score=116.40 Aligned_cols=208 Identities=15% Similarity=0.150 Sum_probs=119.9
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEE----ecCC----------
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVY----TTGK---------- 568 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~----~~g~---------- 568 (932)
.|+||+.+++.|.-++-.+. -.| ++||+|+||||||++|+.+++.+.-... .+|.
T Consensus 17 dIiGQe~v~~~L~~ai~~~r-----i~h------a~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g 85 (624)
T PRK14959 17 EVAGQETVKAILSRAAQENR-----VAP------AYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQG 85 (624)
T ss_pred HhcCCHHHHHHHHHHHHcCC-----CCc------eEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcC
Confidence 46799999888887776541 113 7899999999999999999987642100 0111
Q ss_pred -CcccccccceeecCcccchhhhc--cC-ceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceE
Q 002353 569 -GASAVGLTAAVHKDPVTREWTLE--GG-ALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCS 644 (932)
Q Consensus 569 -~ss~~gLta~v~kd~~~g~~~le--~G-al~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~s 644 (932)
......+.++.... ......+. .+ .-..+...|++|||++.|+...+..|+..||.-. ..+.
T Consensus 86 ~hpDv~eId~a~~~~-Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~-------------~~~i 151 (624)
T PRK14959 86 MHVDVVEIDGASNRG-IDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPP-------------ARVT 151 (624)
T ss_pred CCCceEEEecccccC-HHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccC-------------CCEE
Confidence 00111111100000 00000000 00 0112355799999999999999999999998521 2345
Q ss_pred EEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhh
Q 002353 645 VIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDI 724 (932)
Q Consensus 645 IIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~ 724 (932)
+|.+||... .+...|+||+-.+ .+
T Consensus 152 fILaTt~~~-------------kll~TI~SRcq~i-~F------------------------------------------ 175 (624)
T PRK14959 152 FVLATTEPH-------------KFPVTIVSRCQHF-TF------------------------------------------ 175 (624)
T ss_pred EEEecCChh-------------hhhHHHHhhhhcc-cc------------------------------------------
Confidence 555555322 5667788887532 22
Q ss_pred hhhcccCCCCCCCHHHHHHHHHH-HhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhC
Q 002353 725 QVADREIDPEILPQDLLKKYITY-AKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRL 803 (932)
Q Consensus 725 ~~~~~~~~~~~i~~~~LrkyI~y-ar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~l 803 (932)
..++.+.+.+++.. ++. -...+++++.+.|.++. .+++|...+++..+ +. ..
T Consensus 176 ---------~pLs~~eL~~~L~~il~~-egi~id~eal~lIA~~s-------------~GdlR~Al~lLeql---l~-~g 228 (624)
T PRK14959 176 ---------TRLSEAGLEAHLTKVLGR-EGVDYDPAAVRLIARRA-------------AGSVRDSMSLLGQV---LA-LG 228 (624)
T ss_pred ---------CCCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHH---HH-hc
Confidence 11344455555542 222 23457888888887751 25677777776532 11 24
Q ss_pred CCCcCHHHHHHHHHH
Q 002353 804 RQHVTQEDVNMAIRV 818 (932)
Q Consensus 804 r~~Vt~~Dv~~AI~l 818 (932)
...|+.++|..++.+
T Consensus 229 ~~~It~d~V~~~lg~ 243 (624)
T PRK14959 229 ESRLTIDGARGVLGL 243 (624)
T ss_pred CCCcCHHHHHHHhCC
Confidence 567898888776533
No 132
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.91 E-value=7.5e-08 Score=115.32 Aligned_cols=207 Identities=14% Similarity=0.158 Sum_probs=122.5
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCc----EEecCCCcccccccc-
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRA----VYTTGKGASAVGLTA- 577 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~----v~~~g~~ss~~gLta- 577 (932)
.|.||+.++..+.-++..|. + .| .+||+||||+|||++|+.+++.+.-. ...+|.-.+...+..
T Consensus 17 diiGqe~iv~~L~~~i~~~~---i--~h------ayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~ 85 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESNK---I--AN------AYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDND 85 (563)
T ss_pred HccCcHHHHHHHHHHHHcCC---C--Ce------EEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcC
Confidence 57899999998887776652 1 12 58999999999999999999976421 111111000000000
Q ss_pred ---e-eecCcc--cc--hh-hh----ccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceE
Q 002353 578 ---A-VHKDPV--TR--EW-TL----EGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCS 644 (932)
Q Consensus 578 ---~-v~kd~~--~g--~~-~l----e~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~s 644 (932)
. +..+.. .+ .. .+ .... ..++..|++|||++.|+...+++|+..||.- +..+.
T Consensus 86 ~~~dv~~idgas~~~vddIr~l~e~~~~~p-~~~~~KVvIIDEa~~Ls~~a~naLLK~LEep-------------p~~~v 151 (563)
T PRK06647 86 NSLDVIEIDGASNTSVQDVRQIKEEIMFPP-ASSRYRVYIIDEVHMLSNSAFNALLKTIEEP-------------PPYIV 151 (563)
T ss_pred CCCCeEEecCcccCCHHHHHHHHHHHHhch-hcCCCEEEEEEChhhcCHHHHHHHHHhhccC-------------CCCEE
Confidence 0 000100 01 00 00 0001 1346679999999999999899999999852 23345
Q ss_pred EEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhh
Q 002353 645 VIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDI 724 (932)
Q Consensus 645 IIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~ 724 (932)
+|.+++... .+.++|.||+..+-+-
T Consensus 152 fI~~tte~~-------------kL~~tI~SRc~~~~f~------------------------------------------ 176 (563)
T PRK06647 152 FIFATTEVH-------------KLPATIKSRCQHFNFR------------------------------------------ 176 (563)
T ss_pred EEEecCChH-------------HhHHHHHHhceEEEec------------------------------------------
Confidence 555554322 5778999998744331
Q ss_pred hhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhC
Q 002353 725 QVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRL 803 (932)
Q Consensus 725 ~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~l 803 (932)
.++.+.+.+++. .++. -.-.+++++...|... ..+++|.+.+++.-..+.+
T Consensus 177 ----------~l~~~el~~~L~~i~~~-egi~id~eAl~lLa~~-------------s~GdlR~alslLdklis~~---- 228 (563)
T PRK06647 177 ----------LLSLEKIYNMLKKVCLE-DQIKYEDEALKWIAYK-------------STGSVRDAYTLFDQVVSFS---- 228 (563)
T ss_pred ----------CCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHHHHhhc----
Confidence 123344455544 2222 2335778888888764 2357888888876544432
Q ss_pred CCCcCHHHHHHHHH
Q 002353 804 RQHVTQEDVNMAIR 817 (932)
Q Consensus 804 r~~Vt~~Dv~~AI~ 817 (932)
...++.++|..++.
T Consensus 229 ~~~It~e~V~~llg 242 (563)
T PRK06647 229 DSDITLEQIRSKMG 242 (563)
T ss_pred CCCCCHHHHHHHhC
Confidence 35688888887653
No 133
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.91 E-value=2.5e-08 Score=111.18 Aligned_cols=200 Identities=20% Similarity=0.219 Sum_probs=118.9
Q ss_pred ccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCc
Q 002353 504 IYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDP 583 (932)
Q Consensus 504 I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~ 583 (932)
+.|++.++..+.-.+-.+.. .|+||+|+||||||++++.+++.+....+ ......+.++.....
T Consensus 19 ~~g~~~~~~~l~~~i~~~~~------------~~~ll~G~~G~GKt~~~~~l~~~l~~~~~----~~~~i~~~~~~~~~~ 82 (319)
T PRK00440 19 IVGQEEIVERLKSYVKEKNM------------PHLLFAGPPGTGKTTAALALARELYGEDW----RENFLELNASDERGI 82 (319)
T ss_pred hcCcHHHHHHHHHHHhCCCC------------CeEEEECCCCCCHHHHHHHHHHHHcCCcc----ccceEEeccccccch
Confidence 56888888887766644311 17999999999999999999887532111 011111111100000
Q ss_pred cc-----chhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCC
Q 002353 584 VT-----REWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDS 658 (932)
Q Consensus 584 ~~-----g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~ 658 (932)
.. ..+ .....+..+...+++|||++.+....+..|+..|+.. +..+.+|.++|...
T Consensus 83 ~~~~~~i~~~-~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~-------------~~~~~lIl~~~~~~----- 143 (319)
T PRK00440 83 DVIRNKIKEF-ARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMY-------------SQNTRFILSCNYSS----- 143 (319)
T ss_pred HHHHHHHHHH-HhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcC-------------CCCCeEEEEeCCcc-----
Confidence 00 000 0011122234579999999999988888888888742 12345666776432
Q ss_pred CCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCH
Q 002353 659 SKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQ 738 (932)
Q Consensus 659 ~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 738 (932)
.+.+++.+|+-.+.+ .+++.
T Consensus 144 --------~l~~~l~sr~~~~~~----------------------------------------------------~~l~~ 163 (319)
T PRK00440 144 --------KIIDPIQSRCAVFRF----------------------------------------------------SPLKK 163 (319)
T ss_pred --------ccchhHHHHhheeee----------------------------------------------------CCCCH
Confidence 456678888764222 01233
Q ss_pred HHHHHHHH-HHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Q 002353 739 DLLKKYIT-YAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIR 817 (932)
Q Consensus 739 ~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~ 817 (932)
+.+.+++. +++. -...+++++.+.|.+. ..+++|.+.+.++.+.+. ...||.++|..++.
T Consensus 164 ~ei~~~l~~~~~~-~~~~i~~~al~~l~~~-------------~~gd~r~~~~~l~~~~~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 164 EAVAERLRYIAEN-EGIEITDDALEAIYYV-------------SEGDMRKAINALQAAAAT-----GKEVTEEAVYKITG 224 (319)
T ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHhC
Confidence 44555555 3332 2446888888888764 235788887777654332 46799999987753
No 134
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=7.2e-08 Score=114.94 Aligned_cols=288 Identities=15% Similarity=0.163 Sum_probs=150.7
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCc--EE--ecCCCcc-------
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRA--VY--TTGKGAS------- 571 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~--v~--~~g~~ss------- 571 (932)
.|+||+.+++.+.-++..+.. .| .+||+|+||+|||++|+.+++.+.-. .. .+|.-.+
T Consensus 17 divGq~~v~~~L~~~i~~~~~-----~h------a~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~ 85 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQRL-----HH------AYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSG 85 (527)
T ss_pred HhcCcHHHHHHHHHHHHcCCC-----CE------EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcC
Confidence 467999999988877776521 11 35899999999999999999876321 00 1111000
Q ss_pred ----cccccceeecCcccchh-hhc-c-CceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceE
Q 002353 572 ----AVGLTAAVHKDPVTREW-TLE-G-GALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCS 644 (932)
Q Consensus 572 ----~~gLta~v~kd~~~g~~-~le-~-Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~s 644 (932)
...+.++.. ....... .++ . ..-..+...|++|||+++|+...+++|+..||.- +..+.
T Consensus 86 ~~~d~~ei~~~~~-~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep-------------p~~~~ 151 (527)
T PRK14969 86 RFVDLIEVDAASN-TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP-------------PEHVK 151 (527)
T ss_pred CCCceeEeecccc-CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCC-------------CCCEE
Confidence 000111100 0000000 000 0 0011235579999999999999999999999862 22344
Q ss_pred EEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhh
Q 002353 645 VIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDI 724 (932)
Q Consensus 645 IIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~ 724 (932)
+|.+||... .+..+++||+-.+-+
T Consensus 152 fIL~t~d~~-------------kil~tI~SRc~~~~f------------------------------------------- 175 (527)
T PRK14969 152 FILATTDPQ-------------KIPVTVLSRCLQFNL------------------------------------------- 175 (527)
T ss_pred EEEEeCChh-------------hCchhHHHHHHHHhc-------------------------------------------
Confidence 444443222 455678888732222
Q ss_pred hhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCC
Q 002353 725 QVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLR 804 (932)
Q Consensus 725 ~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr 804 (932)
..++.+.+.+|+...-..-.-.+++++...|.+. ..+++|...+++..+.+. ..
T Consensus 176 ---------~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~-------------s~Gslr~al~lldqai~~----~~ 229 (527)
T PRK14969 176 ---------KQMPPPLIVSHLQHILEQENIPFDATALQLLARA-------------AAGSMRDALSLLDQAIAY----GG 229 (527)
T ss_pred ---------CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHHHHHh----cC
Confidence 1134455555555211111234677777777764 135788888887655443 36
Q ss_pred CCcCHHHHHHHHHHH--------HhhhhhhhhhchHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 002353 805 QHVTQEDVNMAIRVL--------LDSFISTQKFGVQKALQRSFRKYMTFKKEYNALLLDLLRELVKNALHFEEIISGSRS 876 (932)
Q Consensus 805 ~~Vt~~Dv~~AI~l~--------~~S~~~~~k~s~~~~l~~~f~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 876 (932)
..|+.++|...+... ..++........... +......+.+ ...++..|-.++++.+.+.. ...
T Consensus 230 ~~I~~~~v~~~~~~~~~~~i~~ll~al~~~~~~~~l~~----~~~l~~~~~~-~~~~l~~l~~~~rd~~~~~~-~~~--- 300 (527)
T PRK14969 230 GTVNESEVRAMLGAIDQDYLFALLEALLAQDGAALLAI----ADAMEERSLS-FDAALQDLAALLHRLAIAQT-VPD--- 300 (527)
T ss_pred CCcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHH----HHHHHHhCCC-HHHHHHHHHHHHHHHHHhhc-Ccc---
Confidence 789999988765421 112211111111111 2222222223 23334444445555554432 111
Q ss_pred CCCCccceeeHHHHHHHHHhcCccccccccCc
Q 002353 877 TSGLSHIDVKVVDLLNRAQELEIYDLHPFFSS 908 (932)
Q Consensus 877 ~~~~~~~~i~~~~l~~~~~~~~i~~~~~f~~s 908 (932)
......-....+...|.++...++..||+.
T Consensus 301 --~~~~~~~~~~~~~~~a~~~s~~~l~~~~~~ 330 (527)
T PRK14969 301 --SIADDLPERDRLLDLAKRLSPEDIQLYYQI 330 (527)
T ss_pred --cccccchHHHHHHHHHHcCCHHHHHHHHHH
Confidence 000111124567777888877777777764
No 135
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.90 E-value=1.8e-08 Score=122.82 Aligned_cols=190 Identities=22% Similarity=0.321 Sum_probs=112.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCccc----ccccceeecCcccchhhhccCceeccCCCeeeeccccccC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASA----VGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMN 612 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~----~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~ 612 (932)
+|||+||||||||++++++++.+...++... ++.. .+..+...++. +. .+ .....+|+||||+|.+.
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~~f~~is-~~~~~~~~~g~~~~~~~~~----f~-~a---~~~~P~IifIDEiD~l~ 257 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS-GSDFVEMFVGVGASRVRDM----FE-QA---KKAAPCIIFIDEIDAVG 257 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCEEEEe-hHHhHHhhhcccHHHHHHH----HH-HH---HhcCCcEEEehhHhhhh
Confidence 6999999999999999999998877665421 1111 11111100000 00 00 01134699999999984
Q ss_pred cchh-----------hhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEE
Q 002353 613 DQDR-----------VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVL 679 (932)
Q Consensus 613 ~~~~-----------~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli 679 (932)
.... ..+.+.+.+ + .|. .-+.++.||||||++. .|++++++ |||..
T Consensus 258 ~~r~~~~~g~~~~~~~~ln~lL~~----m--dg~--~~~~~vivIaaTN~p~-------------~lD~Al~RpgRfdr~ 316 (644)
T PRK10733 258 RQRGAGLGGGHDEREQTLNQMLVE----M--DGF--EGNEGIIVIAATNRPD-------------VLDPALLRPGRFDRQ 316 (644)
T ss_pred hccCCCCCCCchHHHHHHHHHHHh----h--hcc--cCCCCeeEEEecCChh-------------hcCHHHhCCcccceE
Confidence 3211 112222111 0 111 1145678999999976 78999997 99998
Q ss_pred EEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChh
Q 002353 680 CVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDP 759 (932)
Q Consensus 680 ~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~e 759 (932)
+.+ +.|+...-..| +..|....+. .+.+.
T Consensus 317 i~v-~~Pd~~~R~~I----l~~~~~~~~l--------------------------------------------~~~~d-- 345 (644)
T PRK10733 317 VVV-GLPDVRGREQI----LKVHMRRVPL--------------------------------------------APDID-- 345 (644)
T ss_pred EEc-CCCCHHHHHHH----HHHHhhcCCC--------------------------------------------CCcCC--
Confidence 887 55655433333 3333322221 01000
Q ss_pred HHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH
Q 002353 760 DMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLL 820 (932)
Q Consensus 760 a~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~ 820 (932)
...|.+. ....|.+.|.++++-|.-+|.-..+..|+..|+..|+..+.
T Consensus 346 -~~~la~~------------t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~ 393 (644)
T PRK10733 346 -AAIIARG------------TPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 393 (644)
T ss_pred -HHHHHhh------------CCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHh
Confidence 1112211 33468899999999998888888889999999999987553
No 136
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=4.2e-08 Score=118.16 Aligned_cols=206 Identities=16% Similarity=0.152 Sum_probs=120.6
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcE----EecCCC---------
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAV----YTTGKG--------- 569 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v----~~~g~~--------- 569 (932)
+|+||+.+++.|.-++-.|. + .| ..||+||+|||||++++.+++.+.-.- ..+|.-
T Consensus 17 ~iiGq~~v~~~L~~~i~~~~---~--~h------ayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g 85 (576)
T PRK14965 17 DLTGQEHVSRTLQNAIDTGR---V--AH------AFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEG 85 (576)
T ss_pred HccCcHHHHHHHHHHHHcCC---C--Ce------EEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcC
Confidence 57899999999988876652 1 12 469999999999999999998753210 011110
Q ss_pred --cccccccceeecCc-ccchhhhccC-ceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEE
Q 002353 570 --ASAVGLTAAVHKDP-VTREWTLEGG-ALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSV 645 (932)
Q Consensus 570 --ss~~gLta~v~kd~-~~g~~~le~G-al~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sI 645 (932)
.....+.++..... ...+..-... .-..+...|++|||+++|+...+++|+..||.- +..+.+
T Consensus 86 ~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep-------------p~~~~f 152 (576)
T PRK14965 86 RSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP-------------PPHVKF 152 (576)
T ss_pred CCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC-------------CCCeEE
Confidence 00000110000000 0000000000 012346679999999999999999999999952 234455
Q ss_pred EeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhh
Q 002353 646 IAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQ 725 (932)
Q Consensus 646 IAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~ 725 (932)
|.+||... .|..+|+||+-.+-+
T Consensus 153 Il~t~~~~-------------kl~~tI~SRc~~~~f-------------------------------------------- 175 (576)
T PRK14965 153 IFATTEPH-------------KVPITILSRCQRFDF-------------------------------------------- 175 (576)
T ss_pred EEEeCChh-------------hhhHHHHHhhhhhhc--------------------------------------------
Confidence 55555322 678899999843222
Q ss_pred hhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCC
Q 002353 726 VADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLR 804 (932)
Q Consensus 726 ~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr 804 (932)
..++...+..++. .+++ -.-.+++++...|.+. ..+++|...+++.-+.+++ .
T Consensus 176 --------~~l~~~~i~~~L~~i~~~-egi~i~~~al~~la~~-------------a~G~lr~al~~Ldqliay~----g 229 (576)
T PRK14965 176 --------RRIPLQKIVDRLRYIADQ-EGISISDAALALVARK-------------GDGSMRDSLSTLDQVLAFC----G 229 (576)
T ss_pred --------CCCCHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHHHHHhc----c
Confidence 1134445555554 2332 2345778888777764 2357787777775443332 2
Q ss_pred CCcCHHHHHHH
Q 002353 805 QHVTQEDVNMA 815 (932)
Q Consensus 805 ~~Vt~~Dv~~A 815 (932)
+.|+.+||...
T Consensus 230 ~~It~edV~~l 240 (576)
T PRK14965 230 DAVGDDDVAEL 240 (576)
T ss_pred CCCCHHHHHHH
Confidence 46888888765
No 137
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.88 E-value=1.1e-08 Score=125.78 Aligned_cols=204 Identities=14% Similarity=0.093 Sum_probs=115.2
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcE---EecCCC---ccccccc
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAV---YTTGKG---ASAVGLT 576 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v---~~~g~~---ss~~gLt 576 (932)
.++|.+..-..++-.|.... .-|+||+||||||||.+++.+++.....- ...+.. .+...+.
T Consensus 187 ~liGR~~ei~~~i~iL~r~~------------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~ll 254 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR------------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL 254 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC------------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHh
Confidence 36676665555555444421 12899999999999999999997531110 000000 0011111
Q ss_pred ceeecCcccchhhhcc----CceeccCCCeeeeccccccCcc------hh---hhHHHHHhhceeeeeccceeEeeccce
Q 002353 577 AAVHKDPVTREWTLEG----GALVLADRGICLIDEFDKMNDQ------DR---VSIHEAMEQQSISISKAGIVTSLQARC 643 (932)
Q Consensus 577 a~v~kd~~~g~~~le~----Gal~lAd~GIl~IDE~dkm~~~------~~---~~L~eamEqq~isi~kagi~~~l~ar~ 643 (932)
++. ...|+|.-.- ..+....++|+|||||+.+-.. .. +.|..++..+ +.
T Consensus 255 aG~---~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g---------------~i 316 (758)
T PRK11034 255 AGT---KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG---------------KI 316 (758)
T ss_pred ccc---chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC---------------Ce
Confidence 111 1123322211 1122345689999999987211 11 1233344333 35
Q ss_pred EEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhh
Q 002353 644 SVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEED 723 (932)
Q Consensus 644 sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~ 723 (932)
.+|+|||+.. +...+..+++|.+||+.+.+ +.|+.+.-..|.+.+...+..+|..
T Consensus 317 ~vIgATt~~E--------~~~~~~~D~AL~rRFq~I~v--~ePs~~~~~~IL~~~~~~ye~~h~v--------------- 371 (758)
T PRK11034 317 RVIGSTTYQE--------FSNIFEKDRALARRFQKIDI--TEPSIEETVQIINGLKPKYEAHHDV--------------- 371 (758)
T ss_pred EEEecCChHH--------HHHHhhccHHHHhhCcEEEe--CCCCHHHHHHHHHHHHHHhhhccCC---------------
Confidence 7899999842 12224789999999985444 6666666666665554443333322
Q ss_pred hhhhcccCCCCCCCHHHHHHHHHHHhhcCCC-cCChhHHHHHHHHHHHHH
Q 002353 724 IQVADREIDPEILPQDLLKKYITYAKLNVFP-RLHDPDMEKLTHVYAELR 772 (932)
Q Consensus 724 ~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P-~Ls~ea~~~L~~~Y~~lR 772 (932)
.++.+.++.-+.++.+++.. .|++.|.+.|...-...|
T Consensus 372 -----------~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~ 410 (758)
T PRK11034 372 -----------RYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARAR 410 (758)
T ss_pred -----------CcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhc
Confidence 25667777777777776655 578888888877655433
No 138
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.88 E-value=8.6e-08 Score=113.38 Aligned_cols=205 Identities=17% Similarity=0.208 Sum_probs=119.5
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCC----cEEecCC----------
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQR----AVYTTGK---------- 568 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r----~v~~~g~---------- 568 (932)
.|.||+.+++.+.-++-.|. ++ | ..||+|+||+|||++|+.+++.+.- ....+|.
T Consensus 15 eiiGqe~v~~~L~~~I~~gr---l~--h------ayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~ 83 (535)
T PRK08451 15 ELIGQESVSKTLSLALDNNR---LA--H------AYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALEN 83 (535)
T ss_pred HccCcHHHHHHHHHHHHcCC---CC--e------eEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhc
Confidence 57899999999888886652 11 1 3489999999999999999987531 1001110
Q ss_pred -Ccccccccceeec--CcccchhhhccC--ceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccce
Q 002353 569 -GASAVGLTAAVHK--DPVTREWTLEGG--ALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARC 643 (932)
Q Consensus 569 -~ss~~gLta~v~k--d~~~g~~~le~G--al~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~ 643 (932)
......+.++... +.. .+. .+.. .-..+...|++|||++.|+.+.+++|+..||.- +..+
T Consensus 84 ~h~dv~eldaas~~gId~I-Rel-ie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp-------------p~~t 148 (535)
T PRK08451 84 RHIDIIEMDAASNRGIDDI-REL-IEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP-------------PSYV 148 (535)
T ss_pred CCCeEEEeccccccCHHHH-HHH-HHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc-------------CCce
Confidence 0011111111000 000 000 0000 012245679999999999999999999999952 2334
Q ss_pred EEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhh
Q 002353 644 SVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEED 723 (932)
Q Consensus 644 sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~ 723 (932)
.+|.+||... .+.+++.||+-. |.+.
T Consensus 149 ~FIL~ttd~~-------------kL~~tI~SRc~~-~~F~---------------------------------------- 174 (535)
T PRK08451 149 KFILATTDPL-------------KLPATILSRTQH-FRFK---------------------------------------- 174 (535)
T ss_pred EEEEEECChh-------------hCchHHHhhcee-EEcC----------------------------------------
Confidence 5555554323 788999999753 3321
Q ss_pred hhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhC
Q 002353 724 IQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRL 803 (932)
Q Consensus 724 ~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~l 803 (932)
.++.+.+..|+...-..-.-.+++++...|.+. ..+++|.+.+++..+.+.+
T Consensus 175 -----------~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~-------------s~GdlR~alnlLdqai~~~---- 226 (535)
T PRK08451 175 -----------QIPQNSIISHLKTILEKEGVSYEPEALEILARS-------------GNGSLRDTLTLLDQAIIYC---- 226 (535)
T ss_pred -----------CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------cCCcHHHHHHHHHHHHHhc----
Confidence 133444555554221111335677777777764 1257787777776554443
Q ss_pred CCCcCHHHHHHH
Q 002353 804 RQHVTQEDVNMA 815 (932)
Q Consensus 804 r~~Vt~~Dv~~A 815 (932)
...||.++|...
T Consensus 227 ~~~It~~~V~~~ 238 (535)
T PRK08451 227 KNAITESKVADM 238 (535)
T ss_pred CCCCCHHHHHHH
Confidence 456777777654
No 139
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.88 E-value=9.2e-08 Score=120.02 Aligned_cols=203 Identities=15% Similarity=0.104 Sum_probs=120.6
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCC----------cEEecCCCcc
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQR----------AVYTTGKGAS 571 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r----------~v~~~g~~ss 571 (932)
..|+|.+...+.++-.|..... -|+||+||||||||.+++.+++.... .++.. .
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~------------~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l----~ 242 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTK------------NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL----D 242 (821)
T ss_pred CCCCCcHHHHHHHHHHHccccc------------CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe----e
Confidence 3478888877777766654321 18999999999999999999887532 12211 1
Q ss_pred cccccceeecCcccchhhhccCce----eccCCCeeeeccccccCcch--------hhhHHHHHhhceeeeeccceeEee
Q 002353 572 AVGLTAAVHKDPVTREWTLEGGAL----VLADRGICLIDEFDKMNDQD--------RVSIHEAMEQQSISISKAGIVTSL 639 (932)
Q Consensus 572 ~~gLta~v~kd~~~g~~~le~Gal----~lAd~GIl~IDE~dkm~~~~--------~~~L~eamEqq~isi~kagi~~~l 639 (932)
...+.++. ...|+|.-.-..+ ....+.|+|||||+.+-... .+.|..++..|
T Consensus 243 ~~~l~ag~---~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg------------- 306 (821)
T CHL00095 243 IGLLLAGT---KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG------------- 306 (821)
T ss_pred HHHHhccC---CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-------------
Confidence 11122211 1224443221111 11234689999998765321 22333444433
Q ss_pred ccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccc
Q 002353 640 QARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNE 719 (932)
Q Consensus 640 ~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~ 719 (932)
.+.+|+|||+.. +...+..+++|.+||..+.+ ..++...-..|.+.+...+...+..
T Consensus 307 --~l~~IgaTt~~e--------y~~~ie~D~aL~rRf~~I~v--~ep~~~e~~aILr~l~~~~e~~~~v----------- 363 (821)
T CHL00095 307 --ELQCIGATTLDE--------YRKHIEKDPALERRFQPVYV--GEPSVEETIEILFGLRSRYEKHHNL----------- 363 (821)
T ss_pred --CcEEEEeCCHHH--------HHHHHhcCHHHHhcceEEec--CCCCHHHHHHHHHHHHHHHHHHcCC-----------
Confidence 357799999853 22224678899999987643 4455444455555554433222221
Q ss_pred hhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCC-cCChhHHHHHHHHHHHHHhc
Q 002353 720 SEEDIQVADREIDPEILPQDLLKKYITYAKLNVFP-RLHDPDMEKLTHVYAELRRE 774 (932)
Q Consensus 720 ~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P-~Ls~ea~~~L~~~Y~~lR~~ 774 (932)
.++.+.+.....++..++.- .+++.|.+.|-......|-.
T Consensus 364 ---------------~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~ 404 (821)
T CHL00095 364 ---------------SISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLI 404 (821)
T ss_pred ---------------CCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHhh
Confidence 16778888888888776654 57888888888877665543
No 140
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=1.8e-07 Score=110.71 Aligned_cols=140 Identities=16% Similarity=0.231 Sum_probs=82.7
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceE-EEeCCCCchHHHHHHHHHHhCCC--cE-EecCC---------
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINV-LLLGDPGTAKSQFLKYVEKTGQR--AV-YTTGK--------- 568 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~Rgdinv-LLvGdPGTGKS~Lak~va~~~~r--~v-~~~g~--------- 568 (932)
-.|.||+.++..|.-++..+. + + |. ||+||||||||++++++++.+.- .. ..+|.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~---l--~-------ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~ 81 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR---L--G-------HAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRR 81 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC---C--C-------eEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhc
Confidence 357899999888877776652 1 1 55 99999999999999999987531 00 01111
Q ss_pred --CcccccccceeecCc-ccchhhhccCc-eeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceE
Q 002353 569 --GASAVGLTAAVHKDP-VTREWTLEGGA-LVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCS 644 (932)
Q Consensus 569 --~ss~~gLta~v~kd~-~~g~~~le~Ga-l~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~s 644 (932)
..-...+.++..... .-.+..-.... -..+...|++|||++.|+...+..|+..|+.. +..+.
T Consensus 82 ~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep-------------~~~t~ 148 (504)
T PRK14963 82 GAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEP-------------PEHVI 148 (504)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhC-------------CCCEE
Confidence 011111111100000 00001000111 12345679999999999988889999999853 12344
Q ss_pred EEeeeCCCCCccCCCCCcccccCCChhhhccccEE
Q 002353 645 VIAAANPVGGRYDSSKTFSENVELTDPIISRFDVL 679 (932)
Q Consensus 645 IIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli 679 (932)
+|.++|... .+.+++.||+..+
T Consensus 149 ~Il~t~~~~-------------kl~~~I~SRc~~~ 170 (504)
T PRK14963 149 FILATTEPE-------------KMPPTILSRTQHF 170 (504)
T ss_pred EEEEcCChh-------------hCChHHhcceEEE
Confidence 555555332 6788899998643
No 141
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.8e-09 Score=113.74 Aligned_cols=171 Identities=23% Similarity=0.273 Sum_probs=95.9
Q ss_pred cccChHHHHHHHhhhhhcCcc--ccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceee
Q 002353 503 SIYGHEDIKTALALSMFGGQE--KNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVH 580 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~--k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~ 580 (932)
.|.|.+.+|.||--+.+=... ....+ +.+..-.+||+||||||||.||++|+-.+...+|.. |...|...+.
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtG--kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSv----SSSDLvSKWm 207 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTG--KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSV----SSSDLVSKWM 207 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcC--CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEe----ehHHHHHHHh
Confidence 356777777776544332110 00010 112334799999999999999999999887555542 1222222111
Q ss_pred cCcccchhhhccCceecc---CCCeeeeccccccCcch--------hhhHHHHHhhceeeeeccceeEeeccceEEEeee
Q 002353 581 KDPVTREWTLEGGALVLA---DRGICLIDEFDKMNDQD--------RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAA 649 (932)
Q Consensus 581 kd~~~g~~~le~Gal~lA---d~GIl~IDE~dkm~~~~--------~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAa 649 (932)
... + .+....+.+| .-.|+||||||.+.... |..=-+.+-|- .| +-.-+..+.|++||
T Consensus 208 GES---E-kLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQM------qG-VG~d~~gvLVLgAT 276 (439)
T KOG0739|consen 208 GES---E-KLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQM------QG-VGNDNDGVLVLGAT 276 (439)
T ss_pred ccH---H-HHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhh------hc-cccCCCceEEEecC
Confidence 110 0 1112233344 33799999999875432 11111222110 11 11224567899999
Q ss_pred CCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCC
Q 002353 650 NPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPK 708 (932)
Q Consensus 650 Np~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~ 708 (932)
|.++ .|+.++.+||+-.+.+ ..|+.. -..+....|....|.
T Consensus 277 NiPw-------------~LDsAIRRRFekRIYI-PLPe~~----AR~~MF~lhlG~tp~ 317 (439)
T KOG0739|consen 277 NIPW-------------VLDSAIRRRFEKRIYI-PLPEAH----ARARMFKLHLGDTPH 317 (439)
T ss_pred CCch-------------hHHHHHHHHhhcceec-cCCcHH----HhhhhheeccCCCcc
Confidence 9987 8999999999988877 333332 223455667666554
No 142
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=8.5e-09 Score=118.96 Aligned_cols=145 Identities=21% Similarity=0.238 Sum_probs=90.0
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcch
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQD 615 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~ 615 (932)
-.|||.||||||||.||++++..+.-.++.. ++..+..++..........+---|.. ..-+|+||||||-+.+..
T Consensus 224 rGvLlHGPPGCGKT~lA~AiAgel~vPf~~i----sApeivSGvSGESEkkiRelF~~A~~-~aPcivFiDeIDAI~pkR 298 (802)
T KOG0733|consen 224 RGVLLHGPPGCGKTSLANAIAGELGVPFLSI----SAPEIVSGVSGESEKKIRELFDQAKS-NAPCIVFIDEIDAITPKR 298 (802)
T ss_pred CceeeeCCCCccHHHHHHHHhhhcCCceEee----cchhhhcccCcccHHHHHHHHHHHhc-cCCeEEEeecccccccch
Confidence 3799999999999999999999988887753 22223333322111110011001111 123799999999998875
Q ss_pred hhhHHHHHhhceeee---eccce--eEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEEEEecCCCCh
Q 002353 616 RVSIHEAMEQQSISI---SKAGI--VTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLCVVKDVVDP 688 (932)
Q Consensus 616 ~~~L~eamEqq~isi---~kagi--~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~~l~D~~d~ 688 (932)
.. -.+-||++-++- .-.+. ..+....+.||||||.+. .|+++|.+ |||--+-+ ..|++
T Consensus 299 e~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD-------------slDpaLRRaGRFdrEI~l-~vP~e 363 (802)
T KOG0733|consen 299 EE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD-------------SLDPALRRAGRFDREICL-GVPSE 363 (802)
T ss_pred hh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc-------------ccCHHHhccccccceeee-cCCch
Confidence 43 445565543211 11121 112346799999999976 68888877 99987665 66777
Q ss_pred hHhHHHHHHHHh
Q 002353 689 VVDEMLAKFVID 700 (932)
Q Consensus 689 ~~D~~La~~vl~ 700 (932)
...++|.+-+..
T Consensus 364 ~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 364 TAREEILRIICR 375 (802)
T ss_pred HHHHHHHHHHHh
Confidence 777766655544
No 143
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.85 E-value=1.1e-07 Score=113.22 Aligned_cols=211 Identities=18% Similarity=0.165 Sum_probs=120.8
Q ss_pred hcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCC----cEEecCCCcc----
Q 002353 500 IAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQR----AVYTTGKGAS---- 571 (932)
Q Consensus 500 iap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r----~v~~~g~~ss---- 571 (932)
-...|.||+.++..+.-++..+.. .| .+||+||||+|||++|+.+++.+.- ....+|.-.+
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~rl-----~h------A~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i 82 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNKL-----TH------AYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESI 82 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCC-----Cc------eEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 334577999999988877765521 12 5899999999999999999987531 1111111110
Q ss_pred -------cccccceeecCc-ccchhhhcc-CceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccc
Q 002353 572 -------AVGLTAAVHKDP-VTREWTLEG-GALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQAR 642 (932)
Q Consensus 572 -------~~gLta~v~kd~-~~g~~~le~-Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar 642 (932)
...+.++....- .-....-.. ..-..++.+|++|||++.|+...+.+|+..||.- +..
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP-------------p~~ 149 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP-------------PKH 149 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhC-------------CCc
Confidence 011111100000 000000000 0112346789999999999999999999999953 123
Q ss_pred eEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhh
Q 002353 643 CSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEE 722 (932)
Q Consensus 643 ~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~ 722 (932)
+.+|.+|+... .+.++++||+..+-+
T Consensus 150 tvfIL~Tt~~~-------------KLl~TI~SRcq~ieF----------------------------------------- 175 (605)
T PRK05896 150 VVFIFATTEFQ-------------KIPLTIISRCQRYNF----------------------------------------- 175 (605)
T ss_pred EEEEEECCChH-------------hhhHHHHhhhhhccc-----------------------------------------
Confidence 34454554322 677889999863322
Q ss_pred hhhhhcccCCCCCCCHHHHHHHHHH-HhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHh
Q 002353 723 DIQVADREIDPEILPQDLLKKYITY-AKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARM 801 (932)
Q Consensus 723 ~~~~~~~~~~~~~i~~~~LrkyI~y-ar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl 801 (932)
..++...+..++.. +++ -...+++++...|... ..+++|.+.+++.-..+.+
T Consensus 176 -----------~~Ls~~eL~~~L~~il~k-egi~Is~eal~~La~l-------------S~GdlR~AlnlLekL~~y~-- 228 (605)
T PRK05896 176 -----------KKLNNSELQELLKSIAKK-EKIKIEDNAIDKIADL-------------ADGSLRDGLSILDQLSTFK-- 228 (605)
T ss_pred -----------CCCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHH-------------cCCcHHHHHHHHHHHHhhc--
Confidence 11344455555552 222 2345778887777764 1256777777666533332
Q ss_pred hCCCCcCHHHHHHHHH
Q 002353 802 RLRQHVTQEDVNMAIR 817 (932)
Q Consensus 802 ~lr~~Vt~~Dv~~AI~ 817 (932)
. ..|+.++|..++.
T Consensus 229 -~-~~It~e~V~ellg 242 (605)
T PRK05896 229 -N-SEIDIEDINKTFG 242 (605)
T ss_pred -C-CCCCHHHHHHHhc
Confidence 2 2388888877543
No 144
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.84 E-value=1.2e-07 Score=113.86 Aligned_cols=207 Identities=17% Similarity=0.164 Sum_probs=121.2
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcE----EecCCCcccccccce
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAV----YTTGKGASAVGLTAA 578 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v----~~~g~~ss~~gLta~ 578 (932)
.+.||+.+++.+.-++..+. -+| ..||+||+|||||++|+.+++.+.-.- ..+|.-.+...+..+
T Consensus 17 ~viGq~~v~~~L~~~i~~~~-----~~h------ayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g 85 (559)
T PRK05563 17 DVVGQEHITKTLKNAIKQGK-----ISH------AYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNG 85 (559)
T ss_pred hccCcHHHHHHHHHHHHcCC-----CCe------EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcC
Confidence 57899999998888877652 112 478899999999999999998753110 111111010000000
Q ss_pred -----eecCcc--cc-----hhhhccC-ceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEE
Q 002353 579 -----VHKDPV--TR-----EWTLEGG-ALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSV 645 (932)
Q Consensus 579 -----v~kd~~--~g-----~~~le~G-al~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sI 645 (932)
+..++. .+ +..-... +-..+...|++|||++.|+....++|+..||.- +..+.+
T Consensus 86 ~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep-------------p~~~if 152 (559)
T PRK05563 86 SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP-------------PAHVIF 152 (559)
T ss_pred CCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC-------------CCCeEE
Confidence 000110 00 0000000 012345679999999999999999999999843 233444
Q ss_pred EeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhh
Q 002353 646 IAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQ 725 (932)
Q Consensus 646 IAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~ 725 (932)
|.+|+... .+.++++||+..+-+-
T Consensus 153 Ilatt~~~-------------ki~~tI~SRc~~~~f~------------------------------------------- 176 (559)
T PRK05563 153 ILATTEPH-------------KIPATILSRCQRFDFK------------------------------------------- 176 (559)
T ss_pred EEEeCChh-------------hCcHHHHhHheEEecC-------------------------------------------
Confidence 44443222 5788899998643320
Q ss_pred hhcccCCCCCCCHHHHHHHHHH-HhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCC
Q 002353 726 VADREIDPEILPQDLLKKYITY-AKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLR 804 (932)
Q Consensus 726 ~~~~~~~~~~i~~~~LrkyI~y-ar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr 804 (932)
.++...+..++.+ +++ -...+++++...|.+. ..+++|...+++.-+.+.+ .
T Consensus 177 ---------~~~~~ei~~~L~~i~~~-egi~i~~~al~~ia~~-------------s~G~~R~al~~Ldq~~~~~----~ 229 (559)
T PRK05563 177 ---------RISVEDIVERLKYILDK-EGIEYEDEALRLIARA-------------AEGGMRDALSILDQAISFG----D 229 (559)
T ss_pred ---------CCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHHHHHhc----c
Confidence 1233445555543 322 2446777888777764 1257888888876554442 5
Q ss_pred CCcCHHHHHHHH
Q 002353 805 QHVTQEDVNMAI 816 (932)
Q Consensus 805 ~~Vt~~Dv~~AI 816 (932)
..|+.+||..++
T Consensus 230 ~~It~~~V~~vl 241 (559)
T PRK05563 230 GKVTYEDALEVT 241 (559)
T ss_pred CCCCHHHHHHHh
Confidence 679999887654
No 145
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=3.4e-08 Score=115.76 Aligned_cols=206 Identities=14% Similarity=0.192 Sum_probs=124.0
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCC----cEEecCC----------
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQR----AVYTTGK---------- 568 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r----~v~~~g~---------- 568 (932)
.++||+.+++.+.-++..|. + .| ++||+|+||||||++|+.+++.+.- ..-.+|.
T Consensus 14 dliGQe~vv~~L~~a~~~~r---i--~h------a~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~ 82 (491)
T PRK14964 14 DLVGQDVLVRILRNAFTLNK---I--PQ------SILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNS 82 (491)
T ss_pred HhcCcHHHHHHHHHHHHcCC---C--Cc------eEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhcc
Confidence 56899999998776665541 1 13 7999999999999999999985321 1111111
Q ss_pred -CcccccccceeecCcccchhhh----c-cC-ceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeecc
Q 002353 569 -GASAVGLTAAVHKDPVTREWTL----E-GG-ALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQA 641 (932)
Q Consensus 569 -~ss~~gLta~v~kd~~~g~~~l----e-~G-al~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~a 641 (932)
......+.++.. +|...+ + .. .-..+...|++|||++.|+...+++|+..||+- +.
T Consensus 83 ~~~Dv~eidaas~----~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP-------------p~ 145 (491)
T PRK14964 83 NHPDVIEIDAASN----TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP-------------AP 145 (491)
T ss_pred CCCCEEEEecccC----CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCC-------------CC
Confidence 111111222100 110000 0 00 012346679999999999999999999999952 23
Q ss_pred ceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchh
Q 002353 642 RCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESE 721 (932)
Q Consensus 642 r~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~ 721 (932)
.+.+|.+|+... .+..+++||+-.+-+-
T Consensus 146 ~v~fIlatte~~-------------Kl~~tI~SRc~~~~f~--------------------------------------- 173 (491)
T PRK14964 146 HVKFILATTEVK-------------KIPVTIISRCQRFDLQ--------------------------------------- 173 (491)
T ss_pred CeEEEEEeCChH-------------HHHHHHHHhheeeecc---------------------------------------
Confidence 344555554332 5778899998543321
Q ss_pred hhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHh
Q 002353 722 EDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARM 801 (932)
Q Consensus 722 ~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl 801 (932)
.++.+.+.+++...-..-.-.+++++.+.|.+. ..+++|.+.+++.-+.+++.
T Consensus 174 -------------~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~-------------s~GslR~alslLdqli~y~~- 226 (491)
T PRK14964 174 -------------KIPTDKLVEHLVDIAKKENIEHDEESLKLIAEN-------------SSGSMRNALFLLEQAAIYSN- 226 (491)
T ss_pred -------------cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHHHHHhcC-
Confidence 123344455554221122446888888888775 23678888888766555442
Q ss_pred hCCCCcCHHHHHHHHHH
Q 002353 802 RLRQHVTQEDVNMAIRV 818 (932)
Q Consensus 802 ~lr~~Vt~~Dv~~AI~l 818 (932)
..||.++|...+.+
T Consensus 227 ---~~It~e~V~~llg~ 240 (491)
T PRK14964 227 ---NKISEKSVRDLLGC 240 (491)
T ss_pred ---CCCCHHHHHHHHcc
Confidence 57999998876433
No 146
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.84 E-value=9.3e-08 Score=108.90 Aligned_cols=236 Identities=20% Similarity=0.194 Sum_probs=125.6
Q ss_pred hcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCC----------CcEEecCCC
Q 002353 500 IAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQ----------RAVYTTGKG 569 (932)
Q Consensus 500 iap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~----------r~v~~~g~~ 569 (932)
+.+.+.|.+.....|...|...... ...-+++|+|+||||||++++++.+.+. ..++.....
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~--------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRG--------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 4445889888777776665431100 0011899999999999999999986532 122222111
Q ss_pred c-cccc----ccceee----cCcccc----h-hhhccCcee-ccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccc
Q 002353 570 A-SAVG----LTAAVH----KDPVTR----E-WTLEGGALV-LADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAG 634 (932)
Q Consensus 570 s-s~~g----Lta~v~----kd~~~g----~-~~le~Gal~-lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kag 634 (932)
. +... +...+. ..+..+ + +..-...+. .....|++|||+|.+....+..|...+.-..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~------- 157 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARS------- 157 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhcccc-------
Confidence 1 1000 111110 000000 0 000000111 1123489999999996443444444432110
Q ss_pred eeEee-ccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccE-EEEecCCCChhHhHHHHHHHHhhccCCCCCCCCC
Q 002353 635 IVTSL-QARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDV-LCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNL 712 (932)
Q Consensus 635 i~~~l-~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDl-i~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~ 712 (932)
.... +.++.+|+++|... +. -.+.+.+.+||.- .+.+ ...
T Consensus 158 -~~~~~~~~v~lI~i~n~~~--------~~--~~l~~~~~s~~~~~~i~f-~p~-------------------------- 199 (365)
T TIGR02928 158 -NGDLDNAKVGVIGISNDLK--------FR--ENLDPRVKSSLCEEEIIF-PPY-------------------------- 199 (365)
T ss_pred -ccCCCCCeEEEEEEECCcc--------hH--hhcCHHHhccCCcceeee-CCC--------------------------
Confidence 0011 25678899998742 11 1466778888852 2222 212
Q ss_pred CCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHH-HhhcCCC-cCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHH
Q 002353 713 DDKSKNESEEDIQVADREIDPEILPQDLLKKYITY-AKLNVFP-RLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIES 790 (932)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~y-ar~~~~P-~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEs 790 (932)
+.+.+..++.. +.....+ .+++++.+.+..... ...+.+|....
T Consensus 200 ------------------------~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~----------~~~Gd~R~al~ 245 (365)
T TIGR02928 200 ------------------------DAEELRDILENRAEKAFYDGVLDDGVIPLCAALAA----------QEHGDARKAID 245 (365)
T ss_pred ------------------------CHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH----------HhcCCHHHHHH
Confidence 22233333331 1101122 466666666655422 12367899999
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhh
Q 002353 791 MIRMSEAHARMRLRQHVTQEDVNMAIRVLLDS 822 (932)
Q Consensus 791 lIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S 822 (932)
+++.|.-.|..+.+..|+.+||..|+..+..+
T Consensus 246 ~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~~ 277 (365)
T TIGR02928 246 LLRVAGEIAEREGAERVTEDHVEKAQEKIEKD 277 (365)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 99998888888888899999999998877543
No 147
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=8e-08 Score=116.19 Aligned_cols=141 Identities=19% Similarity=0.261 Sum_probs=82.2
Q ss_pred cccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcE-----EecCCCcccccc
Q 002353 501 APSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAV-----YTTGKGASAVGL 575 (932)
Q Consensus 501 ap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v-----~~~g~~ss~~gL 575 (932)
...|.||+.+++.|.-++..+. -+| .+||+|+||+|||++++.+++.+.-.. ..+|.-.+...+
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-----i~~------a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i 83 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-----VAH------AYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAI 83 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-----Cce------EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHH
Confidence 3467899999999887777652 112 579999999999999999998753100 001110000000
Q ss_pred cce----e-ecCc--ccc-----hh--hhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeecc
Q 002353 576 TAA----V-HKDP--VTR-----EW--TLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQA 641 (932)
Q Consensus 576 ta~----v-~kd~--~~g-----~~--~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~a 641 (932)
..+ + ..+. ..+ +. .+.... ..++..|++|||++.|+.+.++.|+..||.- +.
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p-~~~~~kVvIIDEa~~L~~~a~naLLk~LEep-------------p~ 149 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRP-ALARYKVYIIDEVHMLSTAAFNALLKTLEEP-------------PP 149 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCc-ccCCeEEEEEeChHhCCHHHHHHHHHHHhcC-------------CC
Confidence 000 0 0000 000 00 001111 2356789999999999998899999999853 12
Q ss_pred ceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEE
Q 002353 642 RCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVL 679 (932)
Q Consensus 642 r~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli 679 (932)
.+.+|.+++... .+...+.||+..+
T Consensus 150 ~tv~Il~t~~~~-------------kll~tI~SR~~~i 174 (585)
T PRK14950 150 HAIFILATTEVH-------------KVPATILSRCQRF 174 (585)
T ss_pred CeEEEEEeCChh-------------hhhHHHHhcccee
Confidence 344455554322 4667788888543
No 148
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.83 E-value=1.8e-07 Score=106.14 Aligned_cols=139 Identities=18% Similarity=0.215 Sum_probs=81.4
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcE----EecCC---------
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAV----YTTGK--------- 568 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v----~~~g~--------- 568 (932)
..|.|++.++..+.-++..|.. +| .+||+||||+|||++++.+++.+.-.. -.+|.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~-----~~------~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~ 82 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRI-----AH------AYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINS 82 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCC-----Ce------EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 3578999999988877765521 12 589999999999999999998754220 01111
Q ss_pred --CcccccccceeecCc-ccchhhhccCce-eccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceE
Q 002353 569 --GASAVGLTAAVHKDP-VTREWTLEGGAL-VLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCS 644 (932)
Q Consensus 569 --~ss~~gLta~v~kd~-~~g~~~le~Gal-~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~s 644 (932)
......+.+...... ......-..... ..+++.|++|||++.|+......|+..|+.- +..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~-------------~~~~~ 149 (355)
T TIGR02397 83 GSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP-------------PEHVV 149 (355)
T ss_pred CCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCC-------------cccee
Confidence 000111111100000 000000001111 2345679999999999988888898888742 23455
Q ss_pred EEeeeCCCCCccCCCCCcccccCCChhhhcccc
Q 002353 645 VIAAANPVGGRYDSSKTFSENVELTDPIISRFD 677 (932)
Q Consensus 645 IIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFD 677 (932)
+|.++|... .+.+++.+|+.
T Consensus 150 lIl~~~~~~-------------~l~~~l~sr~~ 169 (355)
T TIGR02397 150 FILATTEPH-------------KIPATILSRCQ 169 (355)
T ss_pred EEEEeCCHH-------------HHHHHHHhhee
Confidence 666665422 46678888885
No 149
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.1e-08 Score=105.33 Aligned_cols=122 Identities=27% Similarity=0.339 Sum_probs=75.3
Q ss_pred ccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccC---CCeeeeccc
Q 002353 532 LRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLAD---RGICLIDEF 608 (932)
Q Consensus 532 ~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd---~GIl~IDE~ 608 (932)
+|..-.||++||||||||.+||+++......+.. --+...+.+.-+ .| ..+.-.++.+|. -.|+||||+
T Consensus 202 i~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLK-LAgPQLVQMfIG------dG-AkLVRDAFaLAKEkaP~IIFIDEl 273 (424)
T KOG0652|consen 202 IRPPKGVLMYGPPGTGKTLMARACAAQTNATFLK-LAGPQLVQMFIG------DG-AKLVRDAFALAKEKAPTIIFIDEL 273 (424)
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHHhccchHHH-hcchHHHhhhhc------ch-HHHHHHHHHHhhccCCeEEEEech
Confidence 4555589999999999999999998764322111 011111111000 01 112222344442 369999999
Q ss_pred cccCcc-----------hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--c
Q 002353 609 DKMNDQ-----------DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--R 675 (932)
Q Consensus 609 dkm~~~-----------~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--R 675 (932)
|.+... .|..+++.+.|- .| .+-+.++.||||||... -|+++||+ |
T Consensus 274 DAIGtKRfDSek~GDREVQRTMLELLNQL------DG--Fss~~~vKviAATNRvD-------------iLDPALlRSGR 332 (424)
T KOG0652|consen 274 DAIGTKRFDSEKAGDREVQRTMLELLNQL------DG--FSSDDRVKVIAATNRVD-------------ILDPALLRSGR 332 (424)
T ss_pred hhhccccccccccccHHHHHHHHHHHHhh------cC--CCCccceEEEeeccccc-------------ccCHHHhhccc
Confidence 987533 456788888763 22 12356789999999976 68888887 7
Q ss_pred ccEEEEe
Q 002353 676 FDVLCVV 682 (932)
Q Consensus 676 FDli~~l 682 (932)
.|--+-+
T Consensus 333 LDRKIEf 339 (424)
T KOG0652|consen 333 LDRKIEF 339 (424)
T ss_pred ccccccC
Confidence 7766655
No 150
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.82 E-value=1.1e-07 Score=109.60 Aligned_cols=58 Identities=19% Similarity=0.091 Sum_probs=46.1
Q ss_pred cCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhh
Q 002353 755 RLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDS 822 (932)
Q Consensus 755 ~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S 822 (932)
.+++++.+.+.+... ...+.+|..-.+++.|...|.-+.+..|+.+||..|+.-+..+
T Consensus 228 ~~~~~~l~~i~~~~~----------~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~~ 285 (394)
T PRK00411 228 VVDDEVLDLIADLTA----------REHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEIV 285 (394)
T ss_pred CCCHhHHHHHHHHHH----------HhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHH
Confidence 577888888877643 2246789888999988888888888999999999999877443
No 151
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.80 E-value=1.6e-07 Score=101.55 Aligned_cols=136 Identities=19% Similarity=0.264 Sum_probs=87.2
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCC-cEEecCCCcccccccce---
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQR-AVYTTGKGASAVGLTAA--- 578 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r-~v~~~g~~ss~~gLta~--- 578 (932)
.+.|++.+..++.-++.++. . .|.||+||||||||..+++.++.+.- ..+.+|.- .+.++
T Consensus 37 e~~gQe~vV~~L~~a~~~~~---l---------p~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl----~lnaSder 100 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLRRI---L---------PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVL----ELNASDER 100 (346)
T ss_pred hhcchHHHHHHHHHHHhhcC---C---------ceEEeeCCCCCcHhHHHHHHHHHhcCccccccchh----hhcccccc
Confidence 45799999999998888731 1 29999999999999999998876532 22222211 11111
Q ss_pred ---eecCcccchhhh---ccC--ceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeC
Q 002353 579 ---VHKDPVTREWTL---EGG--ALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAAN 650 (932)
Q Consensus 579 ---v~kd~~~g~~~l---e~G--al~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaN 650 (932)
+.+.+..+--.+ ..+ .-+...-.|++|||.|.|..+.|.+|...||.-. -.+++|--||
T Consensus 101 Gisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s-------------~~trFiLIcn 167 (346)
T KOG0989|consen 101 GISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFS-------------RTTRFILICN 167 (346)
T ss_pred cccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccc-------------cceEEEEEcC
Confidence 111110000000 000 0111223699999999999999999999999521 2346777788
Q ss_pred CCCCccCCCCCcccccCCChhhhccccEEE
Q 002353 651 PVGGRYDSSKTFSENVELTDPIISRFDVLC 680 (932)
Q Consensus 651 p~~Gry~~~~~~~~ni~L~~~LLsRFDli~ 680 (932)
... .|+.|+.||+--+.
T Consensus 168 yls-------------rii~pi~SRC~Kfr 184 (346)
T KOG0989|consen 168 YLS-------------RIIRPLVSRCQKFR 184 (346)
T ss_pred Chh-------------hCChHHHhhHHHhc
Confidence 765 89999999986443
No 152
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.80 E-value=1.3e-07 Score=113.90 Aligned_cols=208 Identities=17% Similarity=0.197 Sum_probs=123.3
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcE---------EecCCCcccc
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAV---------YTTGKGASAV 573 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v---------~~~g~~ss~~ 573 (932)
.|+||+.+++.|.-++..|. + .| .+||+|++|+|||++|+.+++.+.-.. ..+|...+..
T Consensus 25 dliGq~~~v~~L~~~~~~gr---i--~h------a~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~ 93 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFETGR---I--AQ------AFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQ 93 (598)
T ss_pred HhcCcHHHHHHHHHHHHcCC---C--Cc------eEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHH
Confidence 57899999999887776652 1 12 699999999999999999999753110 0111110000
Q ss_pred ccccee-----ecCc--ccchhh-------hccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEee
Q 002353 574 GLTAAV-----HKDP--VTREWT-------LEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSL 639 (932)
Q Consensus 574 gLta~v-----~kd~--~~g~~~-------le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l 639 (932)
.+..+. ..++ .+|.-. ..... +.+...|++|||++.|+....++|+..||.-
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P-~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP------------- 159 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRP-VSARYKVYIIDEVHMLSTAAFNALLKTLEEP------------- 159 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhch-hcCCcEEEEEEChHhCCHHHHHHHHHHHHhC-------------
Confidence 000000 0000 011000 01111 2456789999999999999999999999852
Q ss_pred ccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccc
Q 002353 640 QARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNE 719 (932)
Q Consensus 640 ~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~ 719 (932)
+..+.+|.+++... .+...+.||+-.+-+-
T Consensus 160 p~~~~fIl~tte~~-------------kll~tI~SRcq~~~f~------------------------------------- 189 (598)
T PRK09111 160 PPHVKFIFATTEIR-------------KVPVTVLSRCQRFDLR------------------------------------- 189 (598)
T ss_pred CCCeEEEEEeCChh-------------hhhHHHHhheeEEEec-------------------------------------
Confidence 23455555555432 4667799998543221
Q ss_pred hhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHH
Q 002353 720 SEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAH 798 (932)
Q Consensus 720 ~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~ 798 (932)
.++.+.+.+++. .++. -.-.+++++.+.|... ..+++|.+.+++.-+.++
T Consensus 190 ---------------~l~~~el~~~L~~i~~k-egi~i~~eAl~lIa~~-------------a~Gdlr~al~~Ldkli~~ 240 (598)
T PRK09111 190 ---------------RIEADVLAAHLSRIAAK-EGVEVEDEALALIARA-------------AEGSVRDGLSLLDQAIAH 240 (598)
T ss_pred ---------------CCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHHHHhh
Confidence 123334444444 2222 2345777787777764 235788888887654444
Q ss_pred HHhhCCCCcCHHHHHHHHHH
Q 002353 799 ARMRLRQHVTQEDVNMAIRV 818 (932)
Q Consensus 799 Akl~lr~~Vt~~Dv~~AI~l 818 (932)
+ ...||.++|...+.+
T Consensus 241 g----~g~It~e~V~~llg~ 256 (598)
T PRK09111 241 G----AGEVTAEAVRDMLGL 256 (598)
T ss_pred c----CCCcCHHHHHHHhCC
Confidence 2 457999999876543
No 153
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=1.9e-07 Score=113.12 Aligned_cols=142 Identities=21% Similarity=0.202 Sum_probs=83.9
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcE------EecCCCccccccc
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAV------YTTGKGASAVGLT 576 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v------~~~g~~ss~~gLt 576 (932)
.+.||+.++..|.-++..+. ..| ++||+|+||||||++|+.+++.+.-.. ..||.-.....+.
T Consensus 17 ~liGq~~i~~~L~~~l~~~r-----l~~------a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 17 ELVGQEAIATTLKNALISNR-----IAP------AYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIA 85 (620)
T ss_pred hccChHHHHHHHHHHHHcCC-----CCc------eEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHh
Confidence 57799999998877776551 123 899999999999999999999864311 0122110000000
Q ss_pred ceee-----cCc--ccchhhh----c-c-CceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccce
Q 002353 577 AAVH-----KDP--VTREWTL----E-G-GALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARC 643 (932)
Q Consensus 577 a~v~-----kd~--~~g~~~l----e-~-Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~ 643 (932)
.+.. .+. ..+.-.+ + . ..-+.+...|++|||++.|+...+++|+..||.- +..+
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEeP-------------p~~t 152 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEP-------------PPRV 152 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcC-------------CcCe
Confidence 0000 000 0110000 0 0 0011345679999999999999999999999942 2234
Q ss_pred EEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEE
Q 002353 644 SVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCV 681 (932)
Q Consensus 644 sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~ 681 (932)
.+|.+||... .+.++|.||+..+-+
T Consensus 153 vfIL~t~~~~-------------~llpTIrSRc~~~~f 177 (620)
T PRK14948 153 VFVLATTDPQ-------------RVLPTIISRCQRFDF 177 (620)
T ss_pred EEEEEeCChh-------------hhhHHHHhheeEEEe
Confidence 4555554221 467789999865443
No 154
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.79 E-value=1.8e-08 Score=107.29 Aligned_cols=120 Identities=21% Similarity=0.250 Sum_probs=91.7
Q ss_pred ccCCceEEEeCCCCchHHHHHHHHHHh-------CCCcEEe---cCCCcccccccceeecCcccchhhhccCceeccCCC
Q 002353 532 LRGDINVLLLGDPGTAKSQFLKYVEKT-------GQRAVYT---TGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRG 601 (932)
Q Consensus 532 ~RgdinvLLvGdPGTGKS~Lak~va~~-------~~r~v~~---~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~G 601 (932)
+|...++||.||+|.|||-|++.|..+ +.+-+-+ +-.+.++..-.++.++..+||...-.+|.|-.||||
T Consensus 205 ~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 205 IRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred hhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCc
Confidence 355559999999999999999977543 3332222 122333333345667888899888889999999999
Q ss_pred eeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCC
Q 002353 602 ICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVG 653 (932)
Q Consensus 602 Il~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~ 653 (932)
.+|+|||..+..+.|.-|+.++|... +..-|......+++.+||.+-...
T Consensus 285 mlfldeigelgadeqamllkaieekr--f~pfgsdr~v~sdfqliagtvrdl 334 (531)
T COG4650 285 MLFLDEIGELGADEQAMLLKAIEEKR--FYPFGSDRQVSSDFQLIAGTVRDL 334 (531)
T ss_pred eEehHhhhhcCccHHHHHHHHHHhhc--cCCCCCccccccchHHhhhhHHHH
Confidence 99999999999999999999999877 445666667788889998886644
No 155
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.78 E-value=4e-07 Score=110.49 Aligned_cols=207 Identities=15% Similarity=0.178 Sum_probs=117.9
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEE-----ecCCCcccccccc
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVY-----TTGKGASAVGLTA 577 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~-----~~g~~ss~~gLta 577 (932)
.|.||+.+++.+.-++-.|. . .| ..||+||||||||++|+.+++.+.-.-. .||.-.+..+...
T Consensus 19 dIiGQe~~v~~L~~aI~~~r---l--~H------AYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~ 87 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSNK---I--SH------AYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSL 87 (725)
T ss_pred HhcCcHHHHHHHHHHHHcCC---C--Ce------EEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCC
Confidence 46799999998888877652 1 12 4699999999999999999987532100 0110000000000
Q ss_pred eee-cCcc--cch---hhh--ccCce-eccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEee
Q 002353 578 AVH-KDPV--TRE---WTL--EGGAL-VLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAA 648 (932)
Q Consensus 578 ~v~-kd~~--~g~---~~l--e~Gal-~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAA 648 (932)
.+. .++. .+. ..+ ..... ..+...|++|||++.|....+.+|+..||+- +..+.+|.+
T Consensus 88 Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP-------------P~~tifILa 154 (725)
T PRK07133 88 DIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP-------------PKHVIFILA 154 (725)
T ss_pred cEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC-------------CCceEEEEE
Confidence 000 0000 000 000 00111 1245679999999999999999999999953 233444544
Q ss_pred eCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhc
Q 002353 649 ANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVAD 728 (932)
Q Consensus 649 aNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (932)
|+... .|.++++||+..+-+-
T Consensus 155 Tte~~-------------KLl~TI~SRcq~ieF~---------------------------------------------- 175 (725)
T PRK07133 155 TTEVH-------------KIPLTILSRVQRFNFR---------------------------------------------- 175 (725)
T ss_pred cCChh-------------hhhHHHHhhceeEEcc----------------------------------------------
Confidence 44222 6788999999633321
Q ss_pred ccCCCCCCCHHHHHHHHHH-HhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCc
Q 002353 729 REIDPEILPQDLLKKYITY-AKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHV 807 (932)
Q Consensus 729 ~~~~~~~i~~~~LrkyI~y-ar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~V 807 (932)
.++.+.+.+++.. +.+ -.-.+++++...|... ..+++|.+.+++.-..+++ ...|
T Consensus 176 ------~L~~eeI~~~L~~il~k-egI~id~eAl~~LA~l-------------S~GslR~AlslLekl~~y~----~~~I 231 (725)
T PRK07133 176 ------RISEDEIVSRLEFILEK-ENISYEKNALKLIAKL-------------SSGSLRDALSIAEQVSIFG----NNKI 231 (725)
T ss_pred ------CCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHHHHHhc----cCCC
Confidence 1344455555542 221 1235666777777664 2356777777766544432 3448
Q ss_pred CHHHHHHHH
Q 002353 808 TQEDVNMAI 816 (932)
Q Consensus 808 t~~Dv~~AI 816 (932)
+.++|..++
T Consensus 232 t~e~V~ell 240 (725)
T PRK07133 232 TLKNVEELF 240 (725)
T ss_pred CHHHHHHHH
Confidence 888887653
No 156
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.78 E-value=1.1e-08 Score=114.01 Aligned_cols=140 Identities=16% Similarity=0.136 Sum_probs=79.8
Q ss_pred CceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCccc--chhhhccCce--eccCCCeeeeccccc
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVT--REWTLEGGAL--VLADRGICLIDEFDK 610 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~--g~~~le~Gal--~lAd~GIl~IDE~dk 610 (932)
...+||+||||||||.+++++++.+.-.++.. ++..|.....-++.. .+..-++... ....-.|+||||||.
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg~~~i~v----sa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA 223 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMGIEPIVM----SAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDA 223 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEE----EHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhh
Confidence 34799999999999999999999987665432 111222222111100 0000011111 011346999999998
Q ss_pred cCcch---------h---hhHHHHHhhceeeeecccee--EeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--
Q 002353 611 MNDQD---------R---VSIHEAMEQQSISISKAGIV--TSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS-- 674 (932)
Q Consensus 611 m~~~~---------~---~~L~eamEqq~isi~kagi~--~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs-- 674 (932)
+-... | ..|+..|+. --++.-.|.. ..-..++.||+|||.+. .|+++|++
T Consensus 224 ~~g~r~~~~~tv~~qiV~~tLLnl~D~-p~~v~l~G~w~~~~~~~~V~VIaTTNrpd-------------~LDpALlRpG 289 (413)
T PLN00020 224 GAGRFGTTQYTVNNQMVNGTLMNIADN-PTNVSLGGDWREKEEIPRVPIIVTGNDFS-------------TLYAPLIRDG 289 (413)
T ss_pred cCCCCCCCCcchHHHHHHHHHHHHhcC-CccccccccccccccCCCceEEEeCCCcc-------------cCCHhHcCCC
Confidence 76532 1 123333332 1111112221 22356799999999876 89999999
Q ss_pred cccEEEEecCCCChhHhHHHH
Q 002353 675 RFDVLCVVKDVVDPVVDEMLA 695 (932)
Q Consensus 675 RFDli~~l~D~~d~~~D~~La 695 (932)
|||..+.+ |+.+.-..|.
T Consensus 290 RfDk~i~l---Pd~e~R~eIL 307 (413)
T PLN00020 290 RMEKFYWA---PTREDRIGVV 307 (413)
T ss_pred CCCceeCC---CCHHHHHHHH
Confidence 99998754 5555444443
No 157
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=4e-07 Score=107.51 Aligned_cols=207 Identities=15% Similarity=0.206 Sum_probs=120.3
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCC--cE--EecCCCc--------
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQR--AV--YTTGKGA-------- 570 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r--~v--~~~g~~s-------- 570 (932)
.+.||+.++..+.-++-.+.. .| ..||+||||+|||++|+.+++.+.- .. ..+|.-.
T Consensus 17 diiGq~~i~~~L~~~i~~~~i-----~h------ayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g 85 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQRV-----SH------AYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKG 85 (486)
T ss_pred HccChHHHHHHHHHHHHcCCC-----Ce------EEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcC
Confidence 467999999988877766521 11 3688999999999999999997641 00 0111100
Q ss_pred ---ccccccceeecCcccchhhhc--cCce-eccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceE
Q 002353 571 ---SAVGLTAAVHKDPVTREWTLE--GGAL-VLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCS 644 (932)
Q Consensus 571 ---s~~gLta~v~kd~~~g~~~le--~Gal-~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~s 644 (932)
....+.++.... ......+. .... ..+...|++|||++.|+.....+|+..|+.- +..+.
T Consensus 86 ~~~d~~eidaas~~g-vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep-------------p~~~v 151 (486)
T PRK14953 86 SFPDLIEIDAASNRG-IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP-------------PPRTI 151 (486)
T ss_pred CCCcEEEEeCccCCC-HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC-------------CCCeE
Confidence 000011100000 00000000 0001 1345679999999999988888999998853 22334
Q ss_pred EEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhh
Q 002353 645 VIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDI 724 (932)
Q Consensus 645 IIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~ 724 (932)
+|.++|... .+.+++.+|+..+ .+
T Consensus 152 ~Il~tt~~~-------------kl~~tI~SRc~~i-~f------------------------------------------ 175 (486)
T PRK14953 152 FILCTTEYD-------------KIPPTILSRCQRF-IF------------------------------------------ 175 (486)
T ss_pred EEEEECCHH-------------HHHHHHHHhceEE-Ec------------------------------------------
Confidence 444444222 4677899998532 22
Q ss_pred hhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhC
Q 002353 725 QVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRL 803 (932)
Q Consensus 725 ~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~l 803 (932)
..++.+.+..|+. .++. -.-.+++++.+.|..+ ..+++|.+.+++..+.+++
T Consensus 176 ---------~~ls~~el~~~L~~i~k~-egi~id~~al~~La~~-------------s~G~lr~al~~Ldkl~~~~---- 228 (486)
T PRK14953 176 ---------SKPTKEQIKEYLKRICNE-EKIEYEEKALDLLAQA-------------SEGGMRDAASLLDQASTYG---- 228 (486)
T ss_pred ---------CCCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHHHHHhc----
Confidence 1134445555555 2332 2335677888887764 2257888888887655443
Q ss_pred CCCcCHHHHHHHHH
Q 002353 804 RQHVTQEDVNMAIR 817 (932)
Q Consensus 804 r~~Vt~~Dv~~AI~ 817 (932)
...||.++|..++.
T Consensus 229 ~~~It~~~V~~~lg 242 (486)
T PRK14953 229 EGKVTIKVVEEFLG 242 (486)
T ss_pred CCCcCHHHHHHHhC
Confidence 44688888887643
No 158
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=4.9e-08 Score=109.08 Aligned_cols=116 Identities=17% Similarity=0.227 Sum_probs=75.0
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCC-cccccccceeecCcccchhhhccCceeccCCCeeeeccccccCc-
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKG-ASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMND- 613 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~-ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~- 613 (932)
.||||+||+|+|||.|++.+|+++..++..+... .+.+|..+--+-.-...-.....+.+..|..||+||||+||+..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 4999999999999999999999998887765432 23343332111000001111123556678999999999999973
Q ss_pred -------------chhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCC
Q 002353 614 -------------QDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANP 651 (932)
Q Consensus 614 -------------~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp 651 (932)
..|.+|+..+|--.+.+...|.....+-....|-|+|.
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnI 357 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNI 357 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccce
Confidence 24778999999777777544443334444444444444
No 159
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.74 E-value=8e-08 Score=105.35 Aligned_cols=149 Identities=16% Similarity=0.228 Sum_probs=82.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecC----CC-cccccccceeecCcccchhhhccCceec---cCCCeeeeccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTG----KG-ASAVGLTAAVHKDPVTREWTLEGGALVL---ADRGICLIDEF 608 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g----~~-ss~~gLta~v~kd~~~g~~~le~Gal~l---Ad~GIl~IDE~ 608 (932)
||||+||+|||||.+++.+-+..+...|... .. +++..+-..+. .. ..-..|...- ..+-|+|||++
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie-~~----l~k~~~~~~gP~~~k~lv~fiDDl 109 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIE-SK----LEKRRGRVYGPPGGKKLVLFIDDL 109 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCC-TT----ECECTTEEEEEESSSEEEEEEETT
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHh-hc----EEcCCCCCCCCCCCcEEEEEeccc
Confidence 9999999999999999887665554332210 11 11111110010 00 0001121111 13349999999
Q ss_pred cccCcch------hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEe
Q 002353 609 DKMNDQD------RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVV 682 (932)
Q Consensus 609 dkm~~~~------~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l 682 (932)
+.-..+. ...|.+.|+++.+.-.+... ..--.++.+|||+||..|+. .+++.|++.|-++.+
T Consensus 110 N~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~-~~~i~~i~~vaa~~p~~Gr~----------~is~R~~r~f~i~~~- 177 (272)
T PF12775_consen 110 NMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLE-WKSIEDIQFVAAMNPTGGRN----------PISPRFLRHFNILNI- 177 (272)
T ss_dssp T-S---TTS--HHHHHHHHHHHCSEEECTTTTE-EEEECSEEEEEEESSTTT------------SHHHHHHTTEEEEE--
T ss_pred CCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcE-EEEEeeeEEEEecCCCCCCC----------CCChHHhhheEEEEe-
Confidence 9544332 24566777776654322222 22234689999999987764 688999999987777
Q ss_pred cCCCChhHhHHHHHHHHhhcc
Q 002353 683 KDVVDPVVDEMLAKFVIDSHF 703 (932)
Q Consensus 683 ~D~~d~~~D~~La~~vl~~h~ 703 (932)
+.|+.+.-..|-.-++..|.
T Consensus 178 -~~p~~~sl~~If~~il~~~l 197 (272)
T PF12775_consen 178 -PYPSDESLNTIFSSILQSHL 197 (272)
T ss_dssp ----TCCHHHHHHHHHHHHHT
T ss_pred -cCCChHHHHHHHHHHHhhhc
Confidence 55665555666666666654
No 160
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=9.8e-07 Score=100.94 Aligned_cols=137 Identities=16% Similarity=0.239 Sum_probs=80.8
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEec-CC--Cccccccccee
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTT-GK--GASAVGLTAAV 579 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~-g~--~ss~~gLta~v 579 (932)
++.||+.+++.+.-.+-.|.. .+ ++||+||||+|||++++.+++......... +. ......+.++.
T Consensus 18 ~iig~~~~~~~l~~~i~~~~~-----~~------~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~ 86 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENNHL-----AQ------ALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAAS 86 (367)
T ss_pred hcCCcHHHHHHHHHHHHcCCC-----Ce------EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecccc
Confidence 467999999888877765421 12 799999999999999999988754321110 00 00111111110
Q ss_pred ecCcccchh-h-hc-cCce-eccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCc
Q 002353 580 HKDPVTREW-T-LE-GGAL-VLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGR 655 (932)
Q Consensus 580 ~kd~~~g~~-~-le-~Gal-~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gr 655 (932)
.... ... . .+ .... ..++..+++|||++.|....+..|+..|+.. +..+.+|.++|...
T Consensus 87 ~~~~--~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~-------------~~~~~~Il~~~~~~-- 149 (367)
T PRK14970 87 NNSV--DDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP-------------PAHAIFILATTEKH-- 149 (367)
T ss_pred CCCH--HHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCC-------------CCceEEEEEeCCcc--
Confidence 0000 000 0 00 1111 1345679999999999988788888888742 22345555555322
Q ss_pred cCCCCCcccccCCChhhhccccE
Q 002353 656 YDSSKTFSENVELTDPIISRFDV 678 (932)
Q Consensus 656 y~~~~~~~~ni~L~~~LLsRFDl 678 (932)
.+.+++.+|+-.
T Consensus 150 -----------kl~~~l~sr~~~ 161 (367)
T PRK14970 150 -----------KIIPTILSRCQI 161 (367)
T ss_pred -----------cCCHHHHhccee
Confidence 677889999853
No 161
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.73 E-value=6.5e-07 Score=104.94 Aligned_cols=142 Identities=16% Similarity=0.205 Sum_probs=83.6
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEE-----ecCC---------
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVY-----TTGK--------- 568 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~-----~~g~--------- 568 (932)
.|+||+.++..+.-++-.|. . .| .+||+||||+|||++|+.+++.+.-... .+|.
T Consensus 18 diiGq~~~v~~L~~~i~~~~---i--~h------a~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~ 86 (451)
T PRK06305 18 EILGQDAVVAVLKNALRFNR---A--AH------AYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISS 86 (451)
T ss_pred HhcCcHHHHHHHHHHHHcCC---C--ce------EEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhc
Confidence 57899999988777776542 1 12 5899999999999999999987532100 0110
Q ss_pred --CcccccccceeecCc-ccchhhhccC-ceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceE
Q 002353 569 --GASAVGLTAAVHKDP-VTREWTLEGG-ALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCS 644 (932)
Q Consensus 569 --~ss~~gLta~v~kd~-~~g~~~le~G-al~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~s 644 (932)
......+.+...... .-....-... .-..++..|++|||++.|+...+..|+..||.- +..+.
T Consensus 87 ~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep-------------~~~~~ 153 (451)
T PRK06305 87 GTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP-------------PQHVK 153 (451)
T ss_pred CCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC-------------CCCce
Confidence 000001111000000 0000000000 001356789999999999998889999999852 22345
Q ss_pred EEeeeCCCCCccCCCCCcccccCCChhhhccccEEEE
Q 002353 645 VIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCV 681 (932)
Q Consensus 645 IIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~ 681 (932)
+|.++|... .|.++|.||+..+.+
T Consensus 154 ~Il~t~~~~-------------kl~~tI~sRc~~v~f 177 (451)
T PRK06305 154 FFLATTEIH-------------KIPGTILSRCQKMHL 177 (451)
T ss_pred EEEEeCChH-------------hcchHHHHhceEEeC
Confidence 566665432 677899999975433
No 162
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=6.1e-07 Score=108.32 Aligned_cols=211 Identities=14% Similarity=0.142 Sum_probs=122.5
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcE------------EecCCCc
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAV------------YTTGKGA 570 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v------------~~~g~~s 570 (932)
.|+||+.++..|.-++-+|. . .| .+||+||||||||++|+.+++.+.-.. ..||.-.
T Consensus 17 eivGQe~i~~~L~~~i~~~r---i--~h------a~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~ 85 (620)
T PRK14954 17 DITAQEHITHTIQNSLRMDR---V--GH------GYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECE 85 (620)
T ss_pred HhcCcHHHHHHHHHHHHcCC---C--Ce------eEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCH
Confidence 57899999998877776552 1 12 599999999999999999998753210 1112111
Q ss_pred ccccccce-----eecCc--ccchh-------hhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeecccee
Q 002353 571 SAVGLTAA-----VHKDP--VTREW-------TLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIV 636 (932)
Q Consensus 571 s~~gLta~-----v~kd~--~~g~~-------~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~ 636 (932)
+...+..+ ..-+. ..+.- .+.-+. ..++.-|++|||+++|+...+++|+..||.-
T Consensus 86 sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P-~~~~~KVvIIdEad~Lt~~a~naLLK~LEeP---------- 154 (620)
T PRK14954 86 SCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGP-QKGRYRVYIIDEVHMLSTAAFNAFLKTLEEP---------- 154 (620)
T ss_pred HHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhh-hcCCCEEEEEeChhhcCHHHHHHHHHHHhCC----------
Confidence 10000000 00010 00000 000011 2456779999999999998899999999952
Q ss_pred EeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCC
Q 002353 637 TSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKS 716 (932)
Q Consensus 637 ~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~ 716 (932)
+..+.+|.+++... .|.++|.||+-++-+-
T Consensus 155 ---p~~tv~IL~t~~~~-------------kLl~TI~SRc~~vef~---------------------------------- 184 (620)
T PRK14954 155 ---PPHAIFIFATTELH-------------KIPATIASRCQRFNFK---------------------------------- 184 (620)
T ss_pred ---CCCeEEEEEeCChh-------------hhhHHHHhhceEEecC----------------------------------
Confidence 12233344443221 6778889888644431
Q ss_pred ccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHH
Q 002353 717 KNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSE 796 (932)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAe 796 (932)
.++.+.+.+++...-..-.-.+++++.+.|... ..+++|.+.+.+.-..
T Consensus 185 ------------------~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~-------------s~Gdlr~al~eLeKL~ 233 (620)
T PRK14954 185 ------------------RIPLDEIQSQLQMICRAEGIQIDADALQLIARK-------------AQGSMRDAQSILDQVI 233 (620)
T ss_pred ------------------CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------hCCCHHHHHHHHHHHH
Confidence 134455666665322112345788888888765 2356777777765444
Q ss_pred HHHH-hhCCCCcCHHHHHHHH
Q 002353 797 AHAR-MRLRQHVTQEDVNMAI 816 (932)
Q Consensus 797 A~Ak-l~lr~~Vt~~Dv~~AI 816 (932)
+++. -.-...|+.++|...+
T Consensus 234 ~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 234 AFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HhccccccCCccCHHHHHHHH
Confidence 4431 0124578888887765
No 163
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.72 E-value=7.5e-08 Score=120.85 Aligned_cols=201 Identities=13% Similarity=0.142 Sum_probs=107.9
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEe-cCCCcccc-----ccc
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYT-TGKGASAV-----GLT 576 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~-~g~~ss~~-----gLt 576 (932)
.++|++..-+.++-.|.... .-|++|+||||||||++++.++..+..+... .-.+.... .+.
T Consensus 179 ~vigr~~ei~~~i~iL~r~~------------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ 246 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRT------------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV 246 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCC------------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhh
Confidence 47888877666665555432 1189999999999999999999976432110 00011111 111
Q ss_pred ceeecCcccchhhhccC-ce---ecc-CCCeeeeccccccCcch--------hhhHHHHHhhceeeeeccceeEeeccce
Q 002353 577 AAVHKDPVTREWTLEGG-AL---VLA-DRGICLIDEFDKMNDQD--------RVSIHEAMEQQSISISKAGIVTSLQARC 643 (932)
Q Consensus 577 a~v~kd~~~g~~~le~G-al---~lA-d~GIl~IDE~dkm~~~~--------~~~L~eamEqq~isi~kagi~~~l~ar~ 643 (932)
++. ...|+|.-.-. .+ ..+ ...|+||||++.+.... ...|..+++. ...
T Consensus 247 ag~---~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~---------------g~l 308 (857)
T PRK10865 247 AGA---KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR---------------GEL 308 (857)
T ss_pred hcc---chhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc---------------CCC
Confidence 111 11122221110 11 111 23599999999986442 2233333333 345
Q ss_pred EEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhh
Q 002353 644 SVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEED 723 (932)
Q Consensus 644 sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~ 723 (932)
.+|||||+.. +...++++++|.+||+.+++ ..|+.+.-..+.+.+...+..+|..
T Consensus 309 ~~IgaTt~~e--------~r~~~~~d~al~rRf~~i~v--~eP~~~~~~~iL~~l~~~~e~~~~v--------------- 363 (857)
T PRK10865 309 HCVGATTLDE--------YRQYIEKDAALERRFQKVFV--AEPSVEDTIAILRGLKERYELHHHV--------------- 363 (857)
T ss_pred eEEEcCCCHH--------HHHHhhhcHHHHhhCCEEEe--CCCCHHHHHHHHHHHhhhhccCCCC---------------
Confidence 7899999854 22234789999999997665 4555443344444433322222211
Q ss_pred hhhhcccCCCCCCCHHHHHHHHHHHhhcCCC-cCChhHHHHHHHHHH
Q 002353 724 IQVADREIDPEILPQDLLKKYITYAKLNVFP-RLHDPDMEKLTHVYA 769 (932)
Q Consensus 724 ~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P-~Ls~ea~~~L~~~Y~ 769 (932)
.++.+.+...+..+.+++.. .|++.|.+.|-..-.
T Consensus 364 -----------~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa 399 (857)
T PRK10865 364 -----------QITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAAS 399 (857)
T ss_pred -----------CcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhc
Confidence 13444555544444444432 577777776655433
No 164
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.70 E-value=1.6e-06 Score=97.00 Aligned_cols=133 Identities=21% Similarity=0.287 Sum_probs=79.8
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEE-eCCCCchHHHHHHHHHHhCCCcEEe-cCCCcccccccceee
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLL-LGDPGTAKSQFLKYVEKTGQRAVYT-TGKGASAVGLTAAVH 580 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLL-vGdPGTGKS~Lak~va~~~~r~v~~-~g~~ss~~gLta~v~ 580 (932)
.+.|++.++..+.-.+-.|. .+ |++| +|+||+|||++++++++.....+.. .+.. .. ... .
T Consensus 22 ~~~~~~~~~~~l~~~~~~~~---~~---------~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~---~~-~~~-i 84 (316)
T PHA02544 22 ECILPAADKETFKSIVKKGR---IP---------NMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD---CR-IDF-V 84 (316)
T ss_pred HhcCcHHHHHHHHHHHhcCC---CC---------eEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc---cc-HHH-H
Confidence 45788888777665554331 11 4555 8999999999999999875433221 1111 00 000 0
Q ss_pred cCcccchhhhccCceeccCCCeeeecccccc-CcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCC
Q 002353 581 KDPVTREWTLEGGALVLADRGICLIDEFDKM-NDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSS 659 (932)
Q Consensus 581 kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm-~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~ 659 (932)
++.. ..+. .... ..+..++++|||++.+ ....+..|...|+.. +.++.+|.++|...
T Consensus 85 ~~~l-~~~~-~~~~-~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~-------------~~~~~~Ilt~n~~~------ 142 (316)
T PHA02544 85 RNRL-TRFA-STVS-LTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY-------------SKNCSFIITANNKN------ 142 (316)
T ss_pred HHHH-HHHH-Hhhc-ccCCCeEEEEECcccccCHHHHHHHHHHHHhc-------------CCCceEEEEcCChh------
Confidence 0000 0010 0000 1245689999999999 555666777777742 34567888998643
Q ss_pred CCcccccCCChhhhccccEEEE
Q 002353 660 KTFSENVELTDPIISRFDVLCV 681 (932)
Q Consensus 660 ~~~~~ni~L~~~LLsRFDli~~ 681 (932)
.+.++|.+||..+.+
T Consensus 143 -------~l~~~l~sR~~~i~~ 157 (316)
T PHA02544 143 -------GIIEPLRSRCRVIDF 157 (316)
T ss_pred -------hchHHHHhhceEEEe
Confidence 678999999975433
No 165
>PRK04195 replication factor C large subunit; Provisional
Probab=98.68 E-value=3.6e-07 Score=108.32 Aligned_cols=118 Identities=23% Similarity=0.285 Sum_probs=66.9
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecC
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKD 582 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd 582 (932)
.+.|++.++..+.-.+-+...... .-++||+||||||||++++++++.....+... .++..+.
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~g~~--------~~~lLL~GppG~GKTtla~ala~el~~~~iel---------nasd~r~ 77 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLKGKP--------KKALLLYGPPGVGKTSLAHALANDYGWEVIEL---------NASDQRT 77 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCC--------CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE---------ccccccc
Confidence 467888888776655433210000 12899999999999999999999875433221 1111100
Q ss_pred c-ccchhh---hccCceeccCCCeeeeccccccCc----chhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCC
Q 002353 583 P-VTREWT---LEGGALVLADRGICLIDEFDKMND----QDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPV 652 (932)
Q Consensus 583 ~-~~g~~~---le~Gal~lAd~GIl~IDE~dkm~~----~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~ 652 (932)
. .-..+. .....+.-..+.+++|||++.|.. .....|+..++. .++.||.+||..
T Consensus 78 ~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~---------------~~~~iIli~n~~ 140 (482)
T PRK04195 78 ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK---------------AKQPIILTANDP 140 (482)
T ss_pred HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc---------------CCCCEEEeccCc
Confidence 0 000000 001111112567999999999976 234556666552 234677788864
No 166
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.68 E-value=1.4e-06 Score=99.25 Aligned_cols=135 Identities=17% Similarity=0.182 Sum_probs=78.8
Q ss_pred hhhHHHHHHhhc--ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecC
Q 002353 490 PRIGERIIKSIA--PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTG 567 (932)
Q Consensus 490 ~~i~~~l~~sia--p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g 567 (932)
..+.+.|+.|+- |+-+. ...|...+..++.-. ..+-|++++||||||||+++..+...+ ...+|
T Consensus 173 dEWid~LlrSiG~~P~~~~-~r~k~~~L~rl~~fv----------e~~~Nli~lGp~GTGKThla~~l~~~~---a~~sG 238 (449)
T TIGR02688 173 EEWIDVLIRSIGYEPEGFE-ARQKLLLLARLLPLV----------EPNYNLIELGPKGTGKSYIYNNLSPYV---ILISG 238 (449)
T ss_pred HHHHHHHHHhcCCCcccCC-hHHHHHHHHhhHHHH----------hcCCcEEEECCCCCCHHHHHHHHhHHH---HHHcC
Confidence 456678888865 55444 223333333332211 122399999999999999999876552 12234
Q ss_pred CCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcchh----hhHHHHHhhceeeeeccceeEeeccce
Q 002353 568 KGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDR----VSIHEAMEQQSISISKAGIVTSLQARC 643 (932)
Q Consensus 568 ~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~----~~L~eamEqq~isi~kagi~~~l~ar~ 643 (932)
...+.+.|...... -..|.+. .--+++|||+..++.... ..|...|+.|+.+ ++. .+..+.+
T Consensus 239 ~f~T~a~Lf~~L~~--------~~lg~v~--~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fs--RG~--~~~~a~a 304 (449)
T TIGR02688 239 GTITVAKLFYNIST--------RQIGLVG--RWDVVAFDEVATLKFAKPKELIGILKNYMESGSFT--RGD--ETKSSDA 304 (449)
T ss_pred CcCcHHHHHHHHHH--------HHHhhhc--cCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCcee--ccc--eeeeeee
Confidence 34444444433221 1223332 335899999999776544 4566678888854 443 2455667
Q ss_pred EEEeeeCCC
Q 002353 644 SVIAAANPV 652 (932)
Q Consensus 644 sIIAAaNp~ 652 (932)
+++.-.|..
T Consensus 305 s~vfvGNi~ 313 (449)
T TIGR02688 305 SFVFLGNVP 313 (449)
T ss_pred EEEEEcccC
Confidence 777666653
No 167
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=3.7e-07 Score=110.53 Aligned_cols=141 Identities=20% Similarity=0.229 Sum_probs=83.8
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCc-----EEecCCCcc------
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRA-----VYTTGKGAS------ 571 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~-----v~~~g~~ss------ 571 (932)
.|.||+.++..|.-++-.|. ++ | .+||+||+|+|||++++.+++...-. ...+|...+
T Consensus 18 ~viGq~~~~~~L~~~i~~~~---l~--h------ayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~ 86 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATNK---LA--H------AYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNE 86 (614)
T ss_pred HhcCcHHHHHHHHHHHHcCC---CC--e------eEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhc
Confidence 57899999998888876652 11 1 37999999999999999999975310 001111100
Q ss_pred -----cccccceeecCcccchhhh--ccC-ceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccce
Q 002353 572 -----AVGLTAAVHKDPVTREWTL--EGG-ALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARC 643 (932)
Q Consensus 572 -----~~gLta~v~kd~~~g~~~l--e~G-al~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~ 643 (932)
...+.++-.. .......+ +.. .-..++..|++|||++.|+...+.+|+..||.- +..+
T Consensus 87 ~~~~n~~~ld~~~~~-~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep-------------p~~t 152 (614)
T PRK14971 87 QRSYNIHELDAASNN-SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP-------------PSYA 152 (614)
T ss_pred CCCCceEEecccccC-CHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC-------------CCCe
Confidence 0001110000 00000000 000 012346679999999999999999999999952 2234
Q ss_pred EEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEE
Q 002353 644 SVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCV 681 (932)
Q Consensus 644 sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~ 681 (932)
.+|.+++... .|.++|.||+.++-+
T Consensus 153 ifIL~tt~~~-------------kIl~tI~SRc~iv~f 177 (614)
T PRK14971 153 IFILATTEKH-------------KILPTILSRCQIFDF 177 (614)
T ss_pred EEEEEeCCch-------------hchHHHHhhhheeec
Confidence 4555554322 678899999865433
No 168
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.66 E-value=3.2e-07 Score=110.98 Aligned_cols=233 Identities=18% Similarity=0.180 Sum_probs=128.7
Q ss_pred hcccccChHHHHHHHhhhhhcCccccccCcccccCCceE-EEeCCCCchHHHHHHHHHHhCC-----------CcEEecC
Q 002353 500 IAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINV-LLLGDPGTAKSQFLKYVEKTGQ-----------RAVYTTG 567 (932)
Q Consensus 500 iap~I~G~~~vK~aillaL~gg~~k~~~~~~~~Rgdinv-LLvGdPGTGKS~Lak~va~~~~-----------r~v~~~g 567 (932)
+.+.+.|.+.-...|...|...... .+.-++ +|+|+||||||.++++|.+.+. .-++..+
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC 824 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING 824 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC
Confidence 3445678877776666655443211 011155 5999999999999999976431 1133332
Q ss_pred CC-ccccc----cccee-ecCcccchhh---hc--cCceeccCC--CeeeeccccccCcchhhhHHHHHhhceeeeeccc
Q 002353 568 KG-ASAVG----LTAAV-HKDPVTREWT---LE--GGALVLADR--GICLIDEFDKMNDQDRVSIHEAMEQQSISISKAG 634 (932)
Q Consensus 568 ~~-ss~~g----Lta~v-~kd~~~g~~~---le--~Gal~lAd~--GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kag 634 (932)
.. .+... +...+ ...+.+|... +. ...+....+ -|++|||||.+....+..|+..++--.
T Consensus 825 m~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~------- 897 (1164)
T PTZ00112 825 MNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT------- 897 (1164)
T ss_pred CccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh-------
Confidence 21 11100 00000 0111111100 00 000111122 379999999999877778888877321
Q ss_pred eeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCC
Q 002353 635 IVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDD 714 (932)
Q Consensus 635 i~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~ 714 (932)
...+++.|||++|... +.. .|.+.+.|||-.-.++...
T Consensus 898 ---~s~SKLiLIGISNdlD--------Lpe--rLdPRLRSRLg~eeIvF~P----------------------------- 935 (1164)
T PTZ00112 898 ---KINSKLVLIAISNTMD--------LPE--RLIPRCRSRLAFGRLVFSP----------------------------- 935 (1164)
T ss_pred ---ccCCeEEEEEecCchh--------cch--hhhhhhhhccccccccCCC-----------------------------
Confidence 1135688999999642 111 3455666776532222122
Q ss_pred CCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHH
Q 002353 715 KSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRM 794 (932)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRl 794 (932)
++.+.|+..+...-......++++|.+++++.-+ ...+.+|..-.++|.
T Consensus 936 ---------------------YTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA----------q~SGDARKALDILRr 984 (1164)
T PTZ00112 936 ---------------------YKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA----------NVSGDIRKALQICRK 984 (1164)
T ss_pred ---------------------CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh----------hcCCHHHHHHHHHHH
Confidence 2333333333322111234688888888887422 234789998889988
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHhhh
Q 002353 795 SEAHARMRLRQHVTQEDVNMAIRVLLDSF 823 (932)
Q Consensus 795 AeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~ 823 (932)
|-..+ ....|+.+||.+|+..+..+.
T Consensus 985 AgEik---egskVT~eHVrkAleeiE~sr 1010 (1164)
T PTZ00112 985 AFENK---RGQKIVPRDITEATNQLFDSP 1010 (1164)
T ss_pred HHhhc---CCCccCHHHHHHHHHHHHhhh
Confidence 87653 356899999999987775553
No 169
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.65 E-value=4.4e-07 Score=97.51 Aligned_cols=179 Identities=13% Similarity=0.152 Sum_probs=99.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC----cEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR----AVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMN 612 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r----~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~ 612 (932)
+++|+||||||||+|++++++.+.. ..|.+... .... ..+ ..+ + + ..-.++||||++.++
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~-----~~~~------~~~-~~~-~-~--~~~dlliiDdi~~~~ 110 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK-----RAWF------VPE-VLE-G-M--EQLSLVCIDNIECIA 110 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH-----Hhhh------hHH-HHH-H-h--hhCCEEEEeChhhhc
Confidence 8999999999999999998875432 12221100 0000 000 000 0 1 112489999999987
Q ss_pred cch--hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhcccc--EEEEecCCCCh
Q 002353 613 DQD--RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFD--VLCVVKDVVDP 688 (932)
Q Consensus 613 ~~~--~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFD--li~~l~D~~d~ 688 (932)
... +..|+.++..-. .. .++++|.|++..+..+ -.+.+.|.|||- +++.+. .+
T Consensus 111 ~~~~~~~~lf~l~n~~~----e~-------g~~~li~ts~~~p~~l---------~~~~~~L~SRl~~g~~~~l~-~~-- 167 (235)
T PRK08084 111 GDELWEMAIFDLYNRIL----ES-------GRTRLLITGDRPPRQL---------NLGLPDLASRLDWGQIYKLQ-PL-- 167 (235)
T ss_pred CCHHHHHHHHHHHHHHH----Hc-------CCCeEEEeCCCChHHc---------CcccHHHHHHHhCCceeeec-CC--
Confidence 543 334444443210 00 1224555555433221 135689999996 555551 11
Q ss_pred hHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHH-HhhcCCCcCChhHHHHHHHH
Q 002353 689 VVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITY-AKLNVFPRLHDPDMEKLTHV 767 (932)
Q Consensus 689 ~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~y-ar~~~~P~Ls~ea~~~L~~~ 767 (932)
+.+.+...+.. |+.. .-.+++++.+.|.+.
T Consensus 168 ------------------------------------------------~~~~~~~~l~~~a~~~-~~~l~~~v~~~L~~~ 198 (235)
T PRK08084 168 ------------------------------------------------SDEEKLQALQLRARLR-GFELPEDVGRFLLKR 198 (235)
T ss_pred ------------------------------------------------CHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHh
Confidence 12222222221 2221 346889999988874
Q ss_pred HHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Q 002353 768 YAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIR 817 (932)
Q Consensus 768 Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~ 817 (932)
.+.++|.|++++.... ++.+.-...||..-+.+++.
T Consensus 199 -------------~~~d~r~l~~~l~~l~-~~~l~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 199 -------------LDREMRTLFMTLDQLD-RASITAQRKLTIPFVKEILK 234 (235)
T ss_pred -------------hcCCHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHHc
Confidence 4578999999998753 44444445699888877754
No 170
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.65 E-value=1.4e-07 Score=108.66 Aligned_cols=155 Identities=14% Similarity=0.170 Sum_probs=93.3
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCc-------EEecCCCcccccc
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRA-------VYTTGKGASAVGL 575 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~-------v~~~g~~ss~~gL 575 (932)
.+++-+..-..++.+|..+. |++|+|+||||||++|+.++..+... ..+.+...+...+
T Consensus 176 d~~i~e~~le~l~~~L~~~~--------------~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDF 241 (459)
T PRK11331 176 DLFIPETTIETILKRLTIKK--------------NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDF 241 (459)
T ss_pred cccCCHHHHHHHHHHHhcCC--------------CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHH
Confidence 35555666666666665431 99999999999999999999875321 1111111111122
Q ss_pred cceeecCcccchhhhccCce----ecc-----CCCeeeeccccccCcch-hhhHHHHHhhc------eeee--ec-ccee
Q 002353 576 TAAVHKDPVTREWTLEGGAL----VLA-----DRGICLIDEFDKMNDQD-RVSIHEAMEQQ------SISI--SK-AGIV 636 (932)
Q Consensus 576 ta~v~kd~~~g~~~le~Gal----~lA-----d~GIl~IDE~dkm~~~~-~~~L~eamEqq------~isi--~k-agi~ 636 (932)
..+... ....+....|.+ ..| .+.+++|||++..+... ...++.+||.+ .+.+ .. .+..
T Consensus 242 I~G~rP--~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~ 319 (459)
T PRK11331 242 IQGYRP--NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEER 319 (459)
T ss_pred hcccCC--CCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecccccccc
Confidence 211111 111233344532 111 34699999999988553 55677788853 1221 11 1234
Q ss_pred EeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEe
Q 002353 637 TSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVV 682 (932)
Q Consensus 637 ~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l 682 (932)
..++.++.||||+|... . ++. .++.||++||..+-+-
T Consensus 320 f~iP~Nl~IIgTMNt~D----r--s~~---~lD~AlrRRF~fi~i~ 356 (459)
T PRK11331 320 FYVPENVYIIGLMNTAD----R--SLA---VVDYALRRRFSFIDIE 356 (459)
T ss_pred ccCCCCeEEEEecCccc----c--chh---hccHHHHhhhheEEec
Confidence 57799999999999854 1 211 5899999999887665
No 171
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.64 E-value=7.3e-07 Score=97.98 Aligned_cols=142 Identities=20% Similarity=0.244 Sum_probs=101.0
Q ss_pred CeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEE
Q 002353 601 GICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLC 680 (932)
Q Consensus 601 GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~ 680 (932)
|||||||.+.|+-+-.+.|+.|||.---. .||.|||.-..+-.... ...--.+|..||+|.=++-
T Consensus 293 GVLFIDEvHmLDIE~FsFlnrAlEse~aP--------------Iii~AtNRG~~kiRGTd-~~sPhGIP~DlLDRllII~ 357 (450)
T COG1224 293 GVLFIDEVHMLDIECFSFLNRALESELAP--------------IIILATNRGMTKIRGTD-IESPHGIPLDLLDRLLIIS 357 (450)
T ss_pred ceEEEechhhhhHHHHHHHHHHhhcccCc--------------EEEEEcCCceeeecccC-CcCCCCCCHhhhhheeEEe
Confidence 89999999999999999999999965311 36777886432221111 1112378888998874333
Q ss_pred EecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChh
Q 002353 681 VVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDP 759 (932)
Q Consensus 681 ~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~e 759 (932)
.. +.+.+.++..|. -|+. -.-.|+++
T Consensus 358 t~----------------------------------------------------py~~~EireIi~iRa~e-e~i~l~~~ 384 (450)
T COG1224 358 TR----------------------------------------------------PYSREEIREIIRIRAKE-EDIELSDD 384 (450)
T ss_pred cC----------------------------------------------------CCCHHHHHHHHHHhhhh-hccccCHH
Confidence 31 123344444444 2332 24478999
Q ss_pred HHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhh
Q 002353 760 DMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDS 822 (932)
Q Consensus 760 a~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S 822 (932)
|.++|... +..-++|---.|+--|.-.|+.+.+..|..+||.+|-.+|..+
T Consensus 385 Ale~L~~i------------g~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF~D~ 435 (450)
T COG1224 385 ALEYLTDI------------GEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELFLDV 435 (450)
T ss_pred HHHHHHhh------------chhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHHhhH
Confidence 99998876 4456788888999999999999999999999999999999776
No 172
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.64 E-value=2.4e-07 Score=116.66 Aligned_cols=206 Identities=15% Similarity=0.156 Sum_probs=115.7
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEe-cCCCcccc-----ccc
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYT-TGKGASAV-----GLT 576 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~-~g~~ss~~-----gLt 576 (932)
.++|++..-+.++-.|..... . |++|+||||||||++++.+++........ ...+.... .+.
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~------~------n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~ 241 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTK------N------NPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALI 241 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCC------C------ceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHh
Confidence 378888776666666655421 1 89999999999999999999875432100 00111111 111
Q ss_pred ceeecCcccchhhhc-cCcee---cc-CCCeeeeccccccCcch--------hhhHHHHHhhceeeeeccceeEeeccce
Q 002353 577 AAVHKDPVTREWTLE-GGALV---LA-DRGICLIDEFDKMNDQD--------RVSIHEAMEQQSISISKAGIVTSLQARC 643 (932)
Q Consensus 577 a~v~kd~~~g~~~le-~Gal~---lA-d~GIl~IDE~dkm~~~~--------~~~L~eamEqq~isi~kagi~~~l~ar~ 643 (932)
++. ...|+|.-. ...+. .. ...|+||||++.+.... .+.|..+++ ..+.
T Consensus 242 a~~---~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~---------------~g~i 303 (852)
T TIGR03346 242 AGA---KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA---------------RGEL 303 (852)
T ss_pred hcc---hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh---------------cCce
Confidence 111 111222111 01111 11 34699999999886311 112222222 2346
Q ss_pred EEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhh
Q 002353 644 SVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEED 723 (932)
Q Consensus 644 sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~ 723 (932)
.+|+|||+.. +...+++++++.+||..+.+ ..|+.+.-..+.+.+......+|..
T Consensus 304 ~~IgaTt~~e--------~r~~~~~d~al~rRf~~i~v--~~p~~~~~~~iL~~~~~~~e~~~~v--------------- 358 (852)
T TIGR03346 304 HCIGATTLDE--------YRKYIEKDAALERRFQPVFV--DEPTVEDTISILRGLKERYEVHHGV--------------- 358 (852)
T ss_pred EEEEeCcHHH--------HHHHhhcCHHHHhcCCEEEe--CCCCHHHHHHHHHHHHHHhccccCC---------------
Confidence 7899999853 22335789999999997654 4555443344433333222222221
Q ss_pred hhhhcccCCCCCCCHHHHHHHHHHHhhcCCC-cCChhHHHHHHHHHHHHHhc
Q 002353 724 IQVADREIDPEILPQDLLKKYITYAKLNVFP-RLHDPDMEKLTHVYAELRRE 774 (932)
Q Consensus 724 ~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P-~Ls~ea~~~L~~~Y~~lR~~ 774 (932)
.+..+.+..-+.++.+++.- .|++.|.+.|-..-+..|-.
T Consensus 359 -----------~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~ 399 (852)
T TIGR03346 359 -----------RITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRME 399 (852)
T ss_pred -----------CCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHhh
Confidence 24566777777777776655 68889999888876655543
No 173
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=4.5e-07 Score=109.15 Aligned_cols=224 Identities=22% Similarity=0.309 Sum_probs=145.6
Q ss_pred eEEEeC----CCCchHHHHHHHHHHhCC--------------------CcEEecCCCcccccccceeecCcccc------
Q 002353 537 NVLLLG----DPGTAKSQFLKYVEKTGQ--------------------RAVYTTGKGASAVGLTAAVHKDPVTR------ 586 (932)
Q Consensus 537 nvLLvG----dPGTGKS~Lak~va~~~~--------------------r~v~~~g~~ss~~gLta~v~kd~~~g------ 586 (932)
++.+.| .+|.+++..++.+-.... +.-+....+.....|.+++..++..|
T Consensus 133 ~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG~l~~~~ 212 (647)
T COG1067 133 QIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPKNFVELSPLDGAPVVFATGAIADQLLGSVRHDPYQGGLGTTG 212 (647)
T ss_pred hhhhcccccccchhhHHHHHHHHHhhhhcccchhhhhhhhhhhhccccCCcEEecCCCChhhcceeEEEcCCCCccCCCC
Confidence 444445 778888877664433211 12222334556667888888887654
Q ss_pred hhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeec-----cce---eEeeccceEEEeeeCCCCCccCC
Q 002353 587 EWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISK-----AGI---VTSLQARCSVIAAANPVGGRYDS 658 (932)
Q Consensus 587 ~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~k-----agi---~~~l~ar~sIIAAaNp~~Gry~~ 658 (932)
.-.++||++..|++|||||||+..|....+..++.+|++++..+.- .|. .-..|+++.+|++.|+..
T Consensus 213 ~~~i~pGaVHkAngGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~----- 287 (647)
T COG1067 213 HIRVKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNRED----- 287 (647)
T ss_pred cccccCcccccccCcEEEEEhhhhhCcHHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHH-----
Confidence 5567899999999999999999999988888999999876433311 111 234477888888888742
Q ss_pred CCCcccccCCChhhhccccEE---EEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCC
Q 002353 659 SKTFSENVELTDPIISRFDVL---CVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEI 735 (932)
Q Consensus 659 ~~~~~~ni~L~~~LLsRFDli---~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (932)
+. .+.+++-+|-++. ..+.+... ..+.
T Consensus 288 ---l~---~l~~~~~~r~~g~~y~ae~~~~m~-~~~~------------------------------------------- 317 (647)
T COG1067 288 ---LE---DLHEPDRSRIEGFGYEAEFEDTMP-ITDA------------------------------------------- 317 (647)
T ss_pred ---HH---hhcccCHHHHhhcceEEEEcCCCC-CChH-------------------------------------------
Confidence 11 3444444443332 33322211 0000
Q ss_pred CCHHHHHHHHH-HHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHH
Q 002353 736 LPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNM 814 (932)
Q Consensus 736 i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~ 814 (932)
....++..|+. .++..--|.++..|.+.|..+ .++.....+..++.+|.|-.|+|.|--.|+++.+..++.+||.+
T Consensus 318 nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~---a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~ 394 (647)
T COG1067 318 NRSKLVQFYVQELARDGNIPHLDKDAVEELIRE---AARRAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEE 394 (647)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH---HHHhccccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHH
Confidence 01223333444 233323577888888777764 44444555688999999999999999999999999999999999
Q ss_pred HHHH
Q 002353 815 AIRV 818 (932)
Q Consensus 815 AI~l 818 (932)
|+..
T Consensus 395 a~~~ 398 (647)
T COG1067 395 ALQK 398 (647)
T ss_pred HHHh
Confidence 9876
No 174
>PRK06620 hypothetical protein; Validated
Probab=98.59 E-value=9.9e-07 Score=93.49 Aligned_cols=49 Identities=12% Similarity=0.086 Sum_probs=37.0
Q ss_pred CcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 002353 754 PRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAI 816 (932)
Q Consensus 754 P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI 816 (932)
-.+++++.+.|.+. .+.++|.|++++....+.|.... ..||...+.+++
T Consensus 165 l~l~~ev~~~L~~~-------------~~~d~r~l~~~l~~l~~~~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 165 VTISRQIIDFLLVN-------------LPREYSKIIEILENINYFALISK-RKITISLVKEVL 213 (214)
T ss_pred CCCCHHHHHHHHHH-------------ccCCHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHh
Confidence 46899999999885 45789999999988666565544 468888877664
No 175
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.8e-07 Score=100.48 Aligned_cols=69 Identities=20% Similarity=0.412 Sum_probs=51.1
Q ss_pred HHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCc---eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 495 RIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDI---NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 495 ~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~Rgdi---nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
.|++.+-..|.||+.+|+++++||-....+..-.. .+|..+ |+|++||+|+|||.+||.+|+++..++.
T Consensus 8 eIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~-~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFi 79 (444)
T COG1220 8 EIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEE-ELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFI 79 (444)
T ss_pred HHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCH-HHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 45666777899999999999999986543321110 122222 9999999999999999999999765543
No 176
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=3.7e-07 Score=95.73 Aligned_cols=124 Identities=26% Similarity=0.280 Sum_probs=72.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceecc---CCCeeeeccccccCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLA---DRGICLIDEFDKMND 613 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lA---d~GIl~IDE~dkm~~ 613 (932)
.|||+||||||||+|+|++++....++.-. .|+..+. +--..|-.. .-..+-+| .-.|+||||+|.+..
T Consensus 191 gvllygppg~gktml~kava~~t~a~firv-vgsefvq------kylgegprm-vrdvfrlakenapsiifideidaiat 262 (408)
T KOG0727|consen 191 GVLLYGPPGTGKTMLAKAVANHTTAAFIRV-VGSEFVQ------KYLGEGPRM-VRDVFRLAKENAPSIIFIDEIDAIAT 262 (408)
T ss_pred ceEEeCCCCCcHHHHHHHHhhccchheeee-ccHHHHH------HHhccCcHH-HHHHHHHHhccCCcEEEeehhhhHhh
Confidence 699999999999999999998654433221 1221110 000000000 00011222 236999999998643
Q ss_pred -----------chhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEEE
Q 002353 614 -----------QDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLC 680 (932)
Q Consensus 614 -----------~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~ 680 (932)
+.|..|++.+.|- .|.. -.+++.||.|||... .|+++||+ |.|--+
T Consensus 263 krfdaqtgadrevqril~ellnqm------dgfd--q~~nvkvimatnrad-------------tldpallrpgrldrki 321 (408)
T KOG0727|consen 263 KRFDAQTGADREVQRILIELLNQM------DGFD--QTTNVKVIMATNRAD-------------TLDPALLRPGRLDRKI 321 (408)
T ss_pred hhccccccccHHHHHHHHHHHHhc------cCcC--cccceEEEEecCccc-------------ccCHhhcCCccccccc
Confidence 2355677777652 2221 235678999999865 78899987 777665
Q ss_pred EecCCCChhH
Q 002353 681 VVKDVVDPVV 690 (932)
Q Consensus 681 ~l~D~~d~~~ 690 (932)
-+ ..+|..+
T Consensus 322 ef-plpdrrq 330 (408)
T KOG0727|consen 322 EF-PLPDRRQ 330 (408)
T ss_pred cC-CCCchhh
Confidence 54 2344433
No 177
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.56 E-value=1.1e-06 Score=103.16 Aligned_cols=214 Identities=16% Similarity=0.188 Sum_probs=134.3
Q ss_pred hcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcE--E--ecCCC------
Q 002353 500 IAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAV--Y--TTGKG------ 569 (932)
Q Consensus 500 iap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v--~--~~g~~------ 569 (932)
....+.|++.+.+.|--++..+. + .| --||.|+-|||||++||.+|+.+.=.- . .||.-
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~r---i--~h------AYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I 82 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGR---I--AH------AYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEI 82 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCc---c--hh------hhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhh
Confidence 44566899999999999888762 1 13 579999999999999999999753210 0 01111
Q ss_pred -----cccccccceeecCcccchhhhc--c-CceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeecc
Q 002353 570 -----ASAVGLTAAVHKDPVTREWTLE--G-GALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQA 641 (932)
Q Consensus 570 -----ss~~gLta~v~kd~~~g~~~le--~-Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~a 641 (932)
.-...+-++-... ......+. . -+-+.+...|.+|||.+.|+....++||..+|.= |.
T Consensus 83 ~~g~~~DviEiDaASn~g-VddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP-------------P~ 148 (515)
T COG2812 83 NEGSLIDVIEIDAASNTG-VDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP-------------PS 148 (515)
T ss_pred hcCCcccchhhhhhhccC-hHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccC-------------cc
Confidence 1111111111000 00000010 0 1122345579999999999999999999999853 22
Q ss_pred c-eEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccch
Q 002353 642 R-CSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNES 720 (932)
Q Consensus 642 r-~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~ 720 (932)
. ..|+|||+|. .++..++||+-.+-+
T Consensus 149 hV~FIlATTe~~--------------Kip~TIlSRcq~f~f--------------------------------------- 175 (515)
T COG2812 149 HVKFILATTEPQ--------------KIPNTILSRCQRFDF--------------------------------------- 175 (515)
T ss_pred CeEEEEecCCcC--------------cCchhhhhccccccc---------------------------------------
Confidence 2 3567777774 789999998742222
Q ss_pred hhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHH
Q 002353 721 EEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHAR 800 (932)
Q Consensus 721 ~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Ak 800 (932)
..|+.+.+.+++.+.-..=.-...++|...|.+. ..++.|...||+--+.+++.
T Consensus 176 -------------kri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~-------------a~Gs~RDalslLDq~i~~~~ 229 (515)
T COG2812 176 -------------KRLDLEEIAKHLAAILDKEGINIEEDALSLIARA-------------AEGSLRDALSLLDQAIAFGE 229 (515)
T ss_pred -------------cCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHH-------------cCCChhhHHHHHHHHHHccC
Confidence 1255666666666433322445667777777764 23689999999876655542
Q ss_pred hhCCCCcCHHHHHHHHHHHHh
Q 002353 801 MRLRQHVTQEDVNMAIRVLLD 821 (932)
Q Consensus 801 l~lr~~Vt~~Dv~~AI~l~~~ 821 (932)
..|+.++|.....++..
T Consensus 230 ----~~It~~~v~~~lG~~~~ 246 (515)
T COG2812 230 ----GEITLESVRDMLGLTDI 246 (515)
T ss_pred ----CcccHHHHHHHhCCCCH
Confidence 78999888877655543
No 178
>PRK08727 hypothetical protein; Validated
Probab=98.54 E-value=2e-06 Score=92.38 Aligned_cols=176 Identities=15% Similarity=0.156 Sum_probs=101.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC----cEEecCCCcccccccceeecCcccchhhhccCce-eccCCCeeeecccccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR----AVYTTGKGASAVGLTAAVHKDPVTREWTLEGGAL-VLADRGICLIDEFDKM 611 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r----~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal-~lAd~GIl~IDE~dkm 611 (932)
.++|+|++|||||+|+.+++..+.+ ..|.+. ..+. +.+. ..+ ...+-.+++||||+.+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~-----~~~~---------~~~~---~~~~~l~~~dlLiIDDi~~l 105 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL-----QAAA---------GRLR---DALEALEGRSLVALDGLESI 105 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH-----HHhh---------hhHH---HHHHHHhcCCEEEEeCcccc
Confidence 5999999999999999998765432 122210 0000 0000 000 1122358999999998
Q ss_pred Ccc--hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccc--cEEEEecCCCC
Q 002353 612 NDQ--DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRF--DVLCVVKDVVD 687 (932)
Q Consensus 612 ~~~--~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRF--Dli~~l~D~~d 687 (932)
... .+..++..+.... ..+.++|.|+|..+..+ -.+.+.|.||| -+++.+ ..
T Consensus 106 ~~~~~~~~~lf~l~n~~~------------~~~~~vI~ts~~~p~~l---------~~~~~dL~SRl~~~~~~~l-~~-- 161 (233)
T PRK08727 106 AGQREDEVALFDFHNRAR------------AAGITLLYTARQMPDGL---------ALVLPDLRSRLAQCIRIGL-PV-- 161 (233)
T ss_pred cCChHHHHHHHHHHHHHH------------HcCCeEEEECCCChhhh---------hhhhHHHHHHHhcCceEEe-cC--
Confidence 643 3445666655321 11345788887544322 24578899997 444444 11
Q ss_pred hhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHH
Q 002353 688 PVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTH 766 (932)
Q Consensus 688 ~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~ 766 (932)
++.+.+..++. .|+.. .-.+++++.+.|.+
T Consensus 162 ------------------------------------------------~~~e~~~~iL~~~a~~~-~l~l~~e~~~~La~ 192 (233)
T PRK08727 162 ------------------------------------------------LDDVARAAVLRERAQRR-GLALDEAAIDWLLT 192 (233)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH
Confidence 22334444444 23321 34678888888887
Q ss_pred HHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 002353 767 VYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAI 816 (932)
Q Consensus 767 ~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI 816 (932)
. .+...|.+.+++....+.|....+ .||...+.+++
T Consensus 193 ~-------------~~rd~r~~l~~L~~l~~~~~~~~~-~it~~~~~~~l 228 (233)
T PRK08727 193 H-------------GERELAGLVALLDRLDRESLAAKR-RVTVPFLRRVL 228 (233)
T ss_pred h-------------CCCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHH
Confidence 5 345778777777766654444433 68877776654
No 179
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.53 E-value=1.3e-06 Score=91.03 Aligned_cols=146 Identities=22% Similarity=0.304 Sum_probs=92.2
Q ss_pred HHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccc
Q 002353 494 ERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAV 573 (932)
Q Consensus 494 ~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~ 573 (932)
++---+....|.|+++....+-+..-.|. . .|++|.||||||||+-+..+|+.+-..-|.. ...
T Consensus 19 eKYrP~~l~dIVGNe~tv~rl~via~~gn---m---------P~liisGpPG~GKTTsi~~LAr~LLG~~~ke----~vL 82 (333)
T KOG0991|consen 19 EKYRPSVLQDIVGNEDTVERLSVIAKEGN---M---------PNLIISGPPGTGKTTSILCLARELLGDSYKE----AVL 82 (333)
T ss_pred HhhCchHHHHhhCCHHHHHHHHHHHHcCC---C---------CceEeeCCCCCchhhHHHHHHHHHhChhhhh----Hhh
Confidence 33334455578899887766654443331 1 1999999999999999998888653322221 233
Q ss_pred cccceeecCccc---c--hhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEee
Q 002353 574 GLTAAVHKDPVT---R--EWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAA 648 (932)
Q Consensus 574 gLta~v~kd~~~---g--~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAA 648 (932)
.|.|+..+.-.. . .|.-+.=.+......|+++||.|.|....|.+|...||-- ...+++.-|
T Consensus 83 ELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiy-------------S~ttRFala 149 (333)
T KOG0991|consen 83 ELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIY-------------SNTTRFALA 149 (333)
T ss_pred hccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHH-------------cccchhhhh
Confidence 455554332210 0 0110111111223469999999999999999999999932 234677888
Q ss_pred eCCCCCccCCCCCcccccCCChhhhccccEEEE
Q 002353 649 ANPVGGRYDSSKTFSENVELTDPIISRFDVLCV 681 (932)
Q Consensus 649 aNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~ 681 (932)
||... .+-+|+-||+-++-.
T Consensus 150 CN~s~-------------KIiEPIQSRCAiLRy 169 (333)
T KOG0991|consen 150 CNQSE-------------KIIEPIQSRCAILRY 169 (333)
T ss_pred hcchh-------------hhhhhHHhhhHhhhh
Confidence 98754 677899999875443
No 180
>PRK09087 hypothetical protein; Validated
Probab=98.53 E-value=1.7e-06 Score=92.49 Aligned_cols=175 Identities=14% Similarity=0.130 Sum_probs=102.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcchh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDR 616 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~ 616 (932)
.++|+|++|+|||+|++++++.. ...|.+.. ..+.+ .+.....++++||+++.++. .+
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~-~~~~i~~~--------------~~~~~------~~~~~~~~~l~iDDi~~~~~-~~ 103 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKS-DALLIHPN--------------EIGSD------AANAAAEGPVLIEDIDAGGF-DE 103 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc-CCEEecHH--------------HcchH------HHHhhhcCeEEEECCCCCCC-CH
Confidence 59999999999999999888654 22232210 00010 01111236899999998753 45
Q ss_pred hhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhcccc--EEEEecCCCChhHhHHH
Q 002353 617 VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFD--VLCVVKDVVDPVVDEML 694 (932)
Q Consensus 617 ~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFD--li~~l~D~~d~~~D~~L 694 (932)
..|+..+..- ...++++|.|++.....|. ...+.|.|||. +++.+ ..
T Consensus 104 ~~lf~l~n~~------------~~~g~~ilits~~~p~~~~---------~~~~dL~SRl~~gl~~~l-~~--------- 152 (226)
T PRK09087 104 TGLFHLINSV------------RQAGTSLLMTSRLWPSSWN---------VKLPDLKSRLKAATVVEI-GE--------- 152 (226)
T ss_pred HHHHHHHHHH------------HhCCCeEEEECCCChHHhc---------cccccHHHHHhCCceeec-CC---------
Confidence 5666665421 1123345666654333221 23577899996 44443 11
Q ss_pred HHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhc
Q 002353 695 AKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRE 774 (932)
Q Consensus 695 a~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~ 774 (932)
++.+.++.++...-+...-.+++++.+.|.+.
T Consensus 153 -----------------------------------------pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~------- 184 (226)
T PRK09087 153 -----------------------------------------PDDALLSQVIFKLFADRQLYVDPHVVYYLVSR------- 184 (226)
T ss_pred -----------------------------------------CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------
Confidence 23333444444111112457899999999885
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 002353 775 SSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVL 819 (932)
Q Consensus 775 ~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~ 819 (932)
++.++|.++.++..-.+.|.... ..||..-+.+++..+
T Consensus 185 ------~~r~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 185 ------MERSLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred ------hhhhHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 34678888887766555555444 458888888776543
No 181
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.52 E-value=6.8e-07 Score=104.50 Aligned_cols=189 Identities=11% Similarity=0.237 Sum_probs=107.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC----CcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ----RAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMN 612 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~----r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~ 612 (932)
+++|+|+||+|||+|++++++.+. +.+|.+...- ...+..+.. ......+. -....-.+++|||++.+.
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f-~~~~~~~l~-~~~~~~f~-----~~~~~~dvLiIDDiq~l~ 215 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELF-TEHLVSAIR-SGEMQRFR-----QFYRNVDALFIEDIEVFS 215 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHH-HHHHHHHHh-cchHHHHH-----HHcccCCEEEEcchhhhc
Confidence 799999999999999999998642 2233321100 000011110 00000000 001244699999999986
Q ss_pred cc--hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhcccc--EEEEecCCCCh
Q 002353 613 DQ--DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFD--VLCVVKDVVDP 688 (932)
Q Consensus 613 ~~--~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFD--li~~l~D~~d~ 688 (932)
.. .+..++..+..-. .. ...+|.++|..+. +--.+.+.|.|||. +++-+ ..+
T Consensus 216 ~k~~~qeelf~l~N~l~----~~--------~k~IIlts~~~p~---------~l~~l~~rL~SR~~~Gl~~~l-~~p-- 271 (445)
T PRK12422 216 GKGATQEEFFHTFNSLH----TE--------GKLIVISSTCAPQ---------DLKAMEERLISRFEWGIAIPL-HPL-- 271 (445)
T ss_pred CChhhHHHHHHHHHHHH----HC--------CCcEEEecCCCHH---------HHhhhHHHHHhhhcCCeEEec-CCC--
Confidence 53 3445555543211 01 1245666654321 11157789999996 55554 111
Q ss_pred hHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHHH
Q 002353 689 VVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTHV 767 (932)
Q Consensus 689 ~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~ 767 (932)
+.+.+..|+. .++. ....+++++.+.|...
T Consensus 272 ------------------------------------------------d~e~r~~iL~~k~~~-~~~~l~~evl~~la~~ 302 (445)
T PRK12422 272 ------------------------------------------------TKEGLRSFLERKAEA-LSIRIEETALDFLIEA 302 (445)
T ss_pred ------------------------------------------------CHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHh
Confidence 2233334444 2222 3457888888888764
Q ss_pred HHHHHhcccCCCCcccCHHHHHHHHHHH---HHHHHhhCCCCcCHHHHHHHHHHH
Q 002353 768 YAELRRESSHGQGVPIAVRHIESMIRMS---EAHARMRLRQHVTQEDVNMAIRVL 819 (932)
Q Consensus 768 Y~~lR~~~~~~~~~pitvR~LEslIRlA---eA~Akl~lr~~Vt~~Dv~~AI~l~ 819 (932)
++.++|.|++.+... .|++++.. ..++.+++..++.-+
T Consensus 303 -------------~~~dir~L~g~l~~l~~~~a~~~~~~-~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 303 -------------LSSNVKSLLHALTLLAKRVAYKKLSH-QLLYVDDIKALLHDV 343 (445)
T ss_pred -------------cCCCHHHHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHh
Confidence 346899999887755 47777765 458888888877643
No 182
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.49 E-value=1.1e-06 Score=109.28 Aligned_cols=126 Identities=24% Similarity=0.280 Sum_probs=74.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceec---cCCCeeeeccccccCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVL---ADRGICLIDEFDKMND 613 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~l---Ad~GIl~IDE~dkm~~ 613 (932)
++||+||||||||+|++++++.+...++... ++...+ ..... +. -.+ ...+.. ...+|+||||++.+..
T Consensus 214 giLL~GppGtGKT~laraia~~~~~~~i~i~-~~~i~~---~~~g~--~~-~~l-~~lf~~a~~~~p~il~iDEid~l~~ 285 (733)
T TIGR01243 214 GVLLYGPPGTGKTLLAKAVANEAGAYFISIN-GPEIMS---KYYGE--SE-ERL-REIFKEAEENAPSIIFIDEIDAIAP 285 (733)
T ss_pred eEEEECCCCCChHHHHHHHHHHhCCeEEEEe-cHHHhc---ccccH--HH-HHH-HHHHHHHHhcCCcEEEeehhhhhcc
Confidence 8999999999999999999998766544321 111000 00000 00 000 001111 1236999999998754
Q ss_pred c-----------hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEEE
Q 002353 614 Q-----------DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLC 680 (932)
Q Consensus 614 ~-----------~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~ 680 (932)
. .+..|+..|+.-. -...+.||+|+|+.. .+++++.+ |||..+
T Consensus 286 ~r~~~~~~~~~~~~~~Ll~~ld~l~-----------~~~~vivI~atn~~~-------------~ld~al~r~gRfd~~i 341 (733)
T TIGR01243 286 KREEVTGEVEKRVVAQLLTLMDGLK-----------GRGRVIVIGATNRPD-------------ALDPALRRPGRFDREI 341 (733)
T ss_pred cccCCcchHHHHHHHHHHHHhhccc-----------cCCCEEEEeecCChh-------------hcCHHHhCchhccEEE
Confidence 3 2334555554211 123568899999865 67888876 999887
Q ss_pred EecCCCChhHhHHHH
Q 002353 681 VVKDVVDPVVDEMLA 695 (932)
Q Consensus 681 ~l~D~~d~~~D~~La 695 (932)
.+ ..|+......+.
T Consensus 342 ~i-~~P~~~~R~~Il 355 (733)
T TIGR01243 342 VI-RVPDKRARKEIL 355 (733)
T ss_pred Ee-CCcCHHHHHHHH
Confidence 76 556555444433
No 183
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.48 E-value=7.9e-08 Score=94.57 Aligned_cols=110 Identities=20% Similarity=0.306 Sum_probs=72.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcchh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDR 616 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~ 616 (932)
+|||+|+|||||+.+|+++|....+... ...-..+.. .+.+ .+..+.+|+++|+|++.++...|
T Consensus 23 pvli~GE~GtGK~~~A~~lh~~~~~~~~------~~~~~~~~~----~~~~------~l~~a~~gtL~l~~i~~L~~~~Q 86 (138)
T PF14532_consen 23 PVLITGEPGTGKSLLARALHRYSGRANG------PFIVIDCAS----LPAE------LLEQAKGGTLYLKNIDRLSPEAQ 86 (138)
T ss_dssp -EEEECCTTSSHHHHHHCCHHTTTTCCS-------CCCCCHHC----TCHH------HHHHCTTSEEEEECGCCS-HHHH
T ss_pred cEEEEcCCCCCHHHHHHHHHhhcCccCC------CeEEechhh----CcHH------HHHHcCCCEEEECChHHCCHHHH
Confidence 9999999999999999999998765210 011000100 0111 23335889999999999999999
Q ss_pred hhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEE
Q 002353 617 VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLC 680 (932)
Q Consensus 617 ~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~ 680 (932)
..|.++++... ..++++|+++..... ...++-.+.+.|+.||..+.
T Consensus 87 ~~L~~~l~~~~------------~~~~RlI~ss~~~l~------~l~~~~~~~~~L~~~l~~~~ 132 (138)
T PF14532_consen 87 RRLLDLLKRQE------------RSNVRLIASSSQDLE------ELVEEGRFSPDLYYRLSQLE 132 (138)
T ss_dssp HHHHHHHHHCT------------TTTSEEEEEECC-CC------CHHHHSTHHHHHHHHCSTCE
T ss_pred HHHHHHHHhcC------------CCCeEEEEEeCCCHH------HHhhccchhHHHHHHhCCCE
Confidence 99999998632 345688999887542 22233456677777776443
No 184
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.48 E-value=6e-07 Score=105.52 Aligned_cols=189 Identities=17% Similarity=0.225 Sum_probs=106.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC------cEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR------AVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDK 610 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r------~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dk 610 (932)
+++|+|+||||||+|++++++.+.. .+|.+.... ...+..+.. ......+. + .+..-.+++|||++.
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~-~~~~~~~~~-~~~~~~~~-~----~~~~~dlLiiDDi~~ 222 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF-TNDFVNALR-NNTMEEFK-E----KYRSVDVLLIDDIQF 222 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH-HHHHHHHHH-cCcHHHHH-H----HHhcCCEEEEehhhh
Confidence 6999999999999999999987532 122211100 000111110 00000010 0 111335999999998
Q ss_pred cCcch--hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhcccc--EEEEecCCC
Q 002353 611 MNDQD--RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFD--VLCVVKDVV 686 (932)
Q Consensus 611 m~~~~--~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFD--li~~l~D~~ 686 (932)
+.... +..++..++.-. ..| ..+|.++|..+... -.+.+.|.|||. +++.+ ..|
T Consensus 223 l~~~~~~~~~l~~~~n~l~----~~~--------~~iiits~~~p~~l---------~~l~~~l~SRl~~gl~v~i-~~p 280 (450)
T PRK00149 223 LAGKERTQEEFFHTFNALH----EAG--------KQIVLTSDRPPKEL---------PGLEERLRSRFEWGLTVDI-EPP 280 (450)
T ss_pred hcCCHHHHHHHHHHHHHHH----HCC--------CcEEEECCCCHHHH---------HHHHHHHHhHhcCCeeEEe-cCC
Confidence 86543 345555544211 011 12444555432111 126788999996 44544 223
Q ss_pred ChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHH
Q 002353 687 DPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLT 765 (932)
Q Consensus 687 d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~ 765 (932)
+.+ .+...+. .+.. ....+++++.+.|.
T Consensus 281 d~~--------------------------------------------------~r~~il~~~~~~-~~~~l~~e~l~~ia 309 (450)
T PRK00149 281 DLE--------------------------------------------------TRIAILKKKAEE-EGIDLPDEVLEFIA 309 (450)
T ss_pred CHH--------------------------------------------------HHHHHHHHHHHH-cCCCCCHHHHHHHH
Confidence 222 2222222 1221 23468888888887
Q ss_pred HHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 002353 766 HVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVL 819 (932)
Q Consensus 766 ~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~ 819 (932)
. .+..++|.|++++....+.|.+..+ .||...+..++.-+
T Consensus 310 ~-------------~~~~~~R~l~~~l~~l~~~~~~~~~-~it~~~~~~~l~~~ 349 (450)
T PRK00149 310 K-------------NITSNVRELEGALNRLIAYASLTGK-PITLELAKEALKDL 349 (450)
T ss_pred c-------------CcCCCHHHHHHHHHHHHHHHHhhCC-CCCHHHHHHHHHHh
Confidence 6 3557899999999998888887755 48999888887754
No 185
>PRK06893 DNA replication initiation factor; Validated
Probab=98.48 E-value=1.8e-06 Score=92.48 Aligned_cols=178 Identities=13% Similarity=0.142 Sum_probs=98.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC----CcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ----RAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMN 612 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~----r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~ 612 (932)
.++|+|+||||||+|++++++.+. +..|.+.. .. +.... ..++ .+.+..++||||++.+.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~--------~~---~~~~~-~~~~----~~~~~dlLilDDi~~~~ 104 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS--------KS---QYFSP-AVLE----NLEQQDLVCLDDLQAVI 104 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH--------Hh---hhhhH-HHHh----hcccCCEEEEeChhhhc
Confidence 589999999999999999987642 22332210 00 00000 0010 11234699999999875
Q ss_pred cc--hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhcccc--EEEEecCCCCh
Q 002353 613 DQ--DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFD--VLCVVKDVVDP 688 (932)
Q Consensus 613 ~~--~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFD--li~~l~D~~d~ 688 (932)
.. .+..|+..+.... ..| ...+|.|+|..+..+. .+.+.|.||+- +++.+ ..+
T Consensus 105 ~~~~~~~~l~~l~n~~~----~~~-------~~illits~~~p~~l~---------~~~~~L~sRl~~g~~~~l-~~p-- 161 (229)
T PRK06893 105 GNEEWELAIFDLFNRIK----EQG-------KTLLLISADCSPHALS---------IKLPDLASRLTWGEIYQL-NDL-- 161 (229)
T ss_pred CChHHHHHHHHHHHHHH----HcC-------CcEEEEeCCCChHHcc---------ccchhHHHHHhcCCeeeC-CCC--
Confidence 33 2345666665321 011 1234455554332221 13367788754 44443 112
Q ss_pred hHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHHH
Q 002353 689 VVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTHV 767 (932)
Q Consensus 689 ~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~ 767 (932)
+.+...+.+. .+.. -.-.+++++.+.|.+.
T Consensus 162 ------------------------------------------------d~e~~~~iL~~~a~~-~~l~l~~~v~~~L~~~ 192 (229)
T PRK06893 162 ------------------------------------------------TDEQKIIVLQRNAYQ-RGIELSDEVANFLLKR 192 (229)
T ss_pred ------------------------------------------------CHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHh
Confidence 2222333332 1211 1346889999888874
Q ss_pred HHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 002353 768 YAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAI 816 (932)
Q Consensus 768 Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI 816 (932)
++.++|.|++++.... .+.+.-...||...|.+++
T Consensus 193 -------------~~~d~r~l~~~l~~l~-~~~~~~~~~it~~~v~~~L 227 (229)
T PRK06893 193 -------------LDRDMHTLFDALDLLD-KASLQAQRKLTIPFVKEIL 227 (229)
T ss_pred -------------ccCCHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHh
Confidence 4578999999888654 3444433469988887765
No 186
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.47 E-value=9.3e-07 Score=102.54 Aligned_cols=189 Identities=16% Similarity=0.193 Sum_probs=104.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC------cEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR------AVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDK 610 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r------~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dk 610 (932)
+++|+|+||||||+|++++++.+.. .+|.++..- ...+..+.. ......+. .. +..-.+++|||++.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~-~~~~~~~~~-~~~~~~~~---~~--~~~~dlLiiDDi~~ 210 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF-TNDFVNALR-NNKMEEFK---EK--YRSVDLLLIDDIQF 210 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH-HHHHHHHHH-cCCHHHHH---HH--HHhCCEEEEehhhh
Confidence 6899999999999999999876421 122221000 000000110 00000000 00 12236999999998
Q ss_pred cCcc--hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccE--EEEecCCC
Q 002353 611 MNDQ--DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDV--LCVVKDVV 686 (932)
Q Consensus 611 m~~~--~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDl--i~~l~D~~ 686 (932)
+... .+..++..++.-. .. ...+|.++|..+.. --.+.+.+.|||.- .+.+ ..|
T Consensus 211 l~~~~~~~~~l~~~~n~~~----~~--------~~~iiits~~~p~~---------l~~l~~~l~SRl~~g~~v~i-~~p 268 (405)
T TIGR00362 211 LAGKERTQEEFFHTFNALH----EN--------GKQIVLTSDRPPKE---------LPGLEERLRSRFEWGLVVDI-EPP 268 (405)
T ss_pred hcCCHHHHHHHHHHHHHHH----HC--------CCCEEEecCCCHHH---------HhhhhhhhhhhccCCeEEEe-CCC
Confidence 8654 3444555554211 01 12345566543211 11367889999963 3443 333
Q ss_pred ChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHH
Q 002353 687 DPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTH 766 (932)
Q Consensus 687 d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~ 766 (932)
+.+.-.. .|++. ++. ....+++++.+.|..
T Consensus 269 d~~~r~~----------------------------------------------il~~~---~~~-~~~~l~~e~l~~ia~ 298 (405)
T TIGR00362 269 DLETRLA----------------------------------------------ILQKK---AEE-EGLELPDEVLEFIAK 298 (405)
T ss_pred CHHHHHH----------------------------------------------HHHHH---HHH-cCCCCCHHHHHHHHH
Confidence 3221111 12221 222 245678888888876
Q ss_pred HHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Q 002353 767 VYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRV 818 (932)
Q Consensus 767 ~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l 818 (932)
. +..++|.|++++....+.|.+.. ..||.+.+..++.-
T Consensus 299 ~-------------~~~~~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~ 336 (405)
T TIGR00362 299 N-------------IRSNVRELEGALNRLLAYASLTG-KPITLELAKEALKD 336 (405)
T ss_pred h-------------cCCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHH
Confidence 4 45789999999988888887765 45888888777654
No 187
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.46 E-value=4.4e-06 Score=104.18 Aligned_cols=138 Identities=17% Similarity=0.272 Sum_probs=99.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecC--CCcccccccceeecCcccchhhhccCce--eccCCCeeeeccccccC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTG--KGASAVGLTAAVHKDPVTREWTLEGGAL--VLADRGICLIDEFDKMN 612 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g--~~ss~~gLta~v~kd~~~g~~~le~Gal--~lAd~GIl~IDE~dkm~ 612 (932)
++||-|.||+|||.|..++|+..+....-.. ..+....|.++......+|++...-..+ .+.+||.+++||++-.+
T Consensus 1545 pilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLaS 1624 (4600)
T COG5271 1545 PILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLAS 1624 (4600)
T ss_pred ceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhhhH
Confidence 8999999999999999999998765433211 1122345555544333456655443333 34589999999999988
Q ss_pred cchhhhHHHHHhh-ceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEE
Q 002353 613 DQDRVSIHEAMEQ-QSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCV 681 (932)
Q Consensus 613 ~~~~~~L~eamEq-q~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~ 681 (932)
......|...+++ +...|..-.++.....+++|.||-||...+--. ..||..++.||-.+++
T Consensus 1625 QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGR-------KgLPkSF~nRFsvV~~ 1687 (4600)
T COG5271 1625 QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGR-------KGLPKSFLNRFSVVKM 1687 (4600)
T ss_pred HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCc-------ccCCHHHhhhhheEEe
Confidence 8888888888885 556666666777888999999999997521111 2789999999999887
No 188
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=4.6e-07 Score=95.66 Aligned_cols=135 Identities=21% Similarity=0.272 Sum_probs=76.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceecc---CCCeeeeccccccCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLA---DRGICLIDEFDKMND 613 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lA---d~GIl~IDE~dkm~~ 613 (932)
.|||+||||||||.+|+++++-....+.-. .|+..+ -..+ ..|..... -.+..| ..+|+|+||+|.+..
T Consensus 213 gvllygppgtgktl~aravanrtdacfirv-igselv---qkyv---gegarmvr-elf~martkkaciiffdeidaigg 284 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRTDACFIRV-IGSELV---QKYV---GEGARMVR-ELFEMARTKKACIIFFDEIDAIGG 284 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhcccCceEEee-hhHHHH---HHHh---hhhHHHHH-HHHHHhcccceEEEEeeccccccC
Confidence 799999999999999999998765443321 111111 0000 00110000 011122 236899999998743
Q ss_pred -----------chhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEEE
Q 002353 614 -----------QDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLC 680 (932)
Q Consensus 614 -----------~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~ 680 (932)
+.|..+++.+.|-. |. .-..++.|+.|||.+. .|+++||+ |.|--.
T Consensus 285 arfddg~ggdnevqrtmleli~qld------gf--dprgnikvlmatnrpd-------------tldpallrpgrldrkv 343 (435)
T KOG0729|consen 285 ARFDDGAGGDNEVQRTMLELINQLD------GF--DPRGNIKVLMATNRPD-------------TLDPALLRPGRLDRKV 343 (435)
T ss_pred ccccCCCCCcHHHHHHHHHHHHhcc------CC--CCCCCeEEEeecCCCC-------------CcCHhhcCCcccccce
Confidence 34667888877532 11 1122457899999876 78889987 666544
Q ss_pred EecCCCChhHhHHHHHHHHhhccCC
Q 002353 681 VVKDVVDPVVDEMLAKFVIDSHFKS 705 (932)
Q Consensus 681 ~l~D~~d~~~D~~La~~vl~~h~~~ 705 (932)
-+ -.||- +=..||++.|.++
T Consensus 344 ef-~lpdl----egrt~i~kihaks 363 (435)
T KOG0729|consen 344 EF-GLPDL----EGRTHIFKIHAKS 363 (435)
T ss_pred ec-cCCcc----cccceeEEEeccc
Confidence 32 11221 1223666666543
No 189
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.6e-07 Score=107.22 Aligned_cols=171 Identities=25% Similarity=0.271 Sum_probs=105.2
Q ss_pred ccccChHHHHHHHhhhhhcCcc-ccccCcccccCCc-eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCccccccccee
Q 002353 502 PSIYGHEDIKTALALSMFGGQE-KNVKGKHRLRGDI-NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAV 579 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~-k~~~~~~~~Rgdi-nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v 579 (932)
-.|.|.+.+|+++.-+.+=..- ...-.| +|..+ .+||.||||||||+|+++||-.+...+|. .|+..|+..+
T Consensus 153 ~di~gl~~~k~~l~e~vi~p~lr~d~F~g--lr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~----iSassLtsK~ 226 (428)
T KOG0740|consen 153 DDIAGLEDAKQSLKEAVILPLLRPDLFLG--LREPVRGLLLFGPPGTGKTMLAKAIATESGATFFN----ISASSLTSKY 226 (428)
T ss_pred cCCcchhhHHHHhhhhhhhcccchHhhhc--cccccchhheecCCCCchHHHHHHHHhhhcceEee----ccHHHhhhhc
Confidence 3567888888877644331110 111111 11111 69999999999999999999987665543 3445555544
Q ss_pred ecCcccchhhhccCceecc---CCCeeeeccccccCcch--------hhhHHHHHhhceeeeeccceeEeeccceEEEee
Q 002353 580 HKDPVTREWTLEGGALVLA---DRGICLIDEFDKMNDQD--------RVSIHEAMEQQSISISKAGIVTSLQARCSVIAA 648 (932)
Q Consensus 580 ~kd~~~g~~~le~Gal~lA---d~GIl~IDE~dkm~~~~--------~~~L~eamEqq~isi~kagi~~~l~ar~sIIAA 648 (932)
.... +..+.+ .+..| .-+|+||||+|++-.+- +....+++-| ..|....-+.++.||+|
T Consensus 227 ~Ge~---eK~vra-lf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq------~~~~~s~~~drvlviga 296 (428)
T KOG0740|consen 227 VGES---EKLVRA-LFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQ------FDGKNSAPDDRVLVIGA 296 (428)
T ss_pred cChH---HHHHHH-HHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhh------hccccCCCCCeEEEEec
Confidence 3221 111111 11112 34799999999863332 1222233322 23333333558999999
Q ss_pred eCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhc
Q 002353 649 ANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSH 702 (932)
Q Consensus 649 aNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h 702 (932)
||.++ .+++++++||--++.+ ..|+.+.-..+-.++|..+
T Consensus 297 TN~P~-------------e~Dea~~Rrf~kr~yi-plPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 297 TNRPW-------------ELDEAARRRFVKRLYI-PLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred CCCch-------------HHHHHHHHHhhceeee-cCCCHHHHHHHHHHHHHhC
Confidence 99987 8999999999988876 7788877777777777655
No 190
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=98.41 E-value=2.5e-05 Score=89.70 Aligned_cols=147 Identities=21% Similarity=0.235 Sum_probs=100.9
Q ss_pred HHHHHHHHHhcChhhHHHHHHhhc--ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHH
Q 002353 478 EDKEEIEKLAKDPRIGERIIKSIA--PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYV 555 (932)
Q Consensus 478 ~d~~~i~~l~~~~~i~~~l~~sia--p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~v 555 (932)
++...-++-.....+.+.|+.|+- |+-+.. ..|..++.-|+--+.+ +.|++=.||.|||||++.+-
T Consensus 160 ~~~~~~R~~FT~eEWiD~LlrS~G~eP~~~~~-r~Kl~~L~RLiPlVE~----------N~NliELgPrGTGKS~vy~e- 227 (457)
T PF13337_consen 160 DEYREARKEFTTEEWIDLLLRSIGYEPSGFSE-RQKLLLLARLIPLVER----------NYNLIELGPRGTGKSYVYKE- 227 (457)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhcCCCccccCH-HHHHHHHHhHHHhccc----------ccceEEEcCCCCCceeehhh-
Confidence 333333444444567788899865 555444 6677777777655433 34999999999999999654
Q ss_pred HHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcchh---hhHHHHHhhceeeeec
Q 002353 556 EKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDR---VSIHEAMEQQSISISK 632 (932)
Q Consensus 556 a~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~---~~L~eamEqq~isi~k 632 (932)
++|.+...+|...|.+.|...... + ..|.+..-| ++++||+..+.-.+. ..|...|+.|..+.
T Consensus 228 --iSp~~~liSGG~~T~A~LFyn~~~----~----~~GlV~~~D--~VafDEv~~i~f~d~d~i~imK~YMesG~fsR-- 293 (457)
T PF13337_consen 228 --ISPYGILISGGQVTVAKLFYNMST----G----QIGLVGRWD--VVAFDEVAGIKFKDKDEIQIMKDYMESGSFSR-- 293 (457)
T ss_pred --cCcccEEEECCCcchHHheeeccC----C----cceeeeecc--EEEEEeccCcccCChHHHHHHHHHHhccceee--
Confidence 567788888887887777654332 2 345554433 899999999875443 45667788898654
Q ss_pred cceeEeeccceEEEeeeCCC
Q 002353 633 AGIVTSLQARCSVIAAANPV 652 (932)
Q Consensus 633 agi~~~l~ar~sIIAAaNp~ 652 (932)
++ .+..+.++++...|..
T Consensus 294 G~--~~i~a~as~vf~GNi~ 311 (457)
T PF13337_consen 294 GK--EEINADASMVFVGNIN 311 (457)
T ss_pred cc--cccccceeEEEEcCcC
Confidence 43 3678889999999875
No 191
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.1e-06 Score=103.22 Aligned_cols=160 Identities=19% Similarity=0.230 Sum_probs=97.9
Q ss_pred ccChHHHHHHHhhhhhcCccccc--cCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCccccc-ccce--
Q 002353 504 IYGHEDIKTALALSMFGGQEKNV--KGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVG-LTAA-- 578 (932)
Q Consensus 504 I~G~~~vK~aillaL~gg~~k~~--~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~g-Lta~-- 578 (932)
|.|...+|.++.-.+.-.. |.+ -....+|-.-+|||+||||||||.|+.+++..++-.+... +|..... ..++
T Consensus 669 igg~~~~k~~l~~~i~~P~-kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisv-KGPElL~KyIGaSE 746 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPS-KYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISV-KGPELLSKYIGASE 746 (952)
T ss_pred cccHHHHHHHHHHHHhccc-cchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEe-cCHHHHHHHhcccH
Confidence 6788889888876555332 211 1112345555999999999999999999999887665432 3322110 0111
Q ss_pred -eecCcccchhhhccCceeccCCCeeeeccccccCcch---------h--hhHHHHHhhceeeeeccceeEeeccceEEE
Q 002353 579 -VHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQD---------R--VSIHEAMEQQSISISKAGIVTSLQARCSVI 646 (932)
Q Consensus 579 -v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~---------~--~~L~eamEqq~isi~kagi~~~l~ar~sII 646 (932)
.+++-+.. + ..|.-+|+|+||||.+.+.. | +.|+.-|+-- .. -..+.|+
T Consensus 747 q~vR~lF~r-----A---~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~----------Eg-l~GV~i~ 807 (952)
T KOG0735|consen 747 QNVRDLFER-----A---QSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGA----------EG-LDGVYIL 807 (952)
T ss_pred HHHHHHHHH-----h---hccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccc----------cc-cceEEEE
Confidence 01111111 1 13456899999999987652 2 2333333311 11 2346788
Q ss_pred eeeCCCCCccCCCCCcccccCCChhhhc--cccEEEEecCCCChhHhHHHHHHH
Q 002353 647 AAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLCVVKDVVDPVVDEMLAKFV 698 (932)
Q Consensus 647 AAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~~l~D~~d~~~D~~La~~v 698 (932)
|||.++. -|+++||+ |+|-.... +.|++...-.+.+.+
T Consensus 808 aaTsRpd-------------liDpALLRpGRlD~~v~C-~~P~~~eRl~il~~l 847 (952)
T KOG0735|consen 808 AATSRPD-------------LIDPALLRPGRLDKLVYC-PLPDEPERLEILQVL 847 (952)
T ss_pred EecCCcc-------------ccCHhhcCCCccceeeeC-CCCCcHHHHHHHHHH
Confidence 9988765 68999998 99987766 777777666655443
No 192
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.35 E-value=5.3e-06 Score=99.17 Aligned_cols=190 Identities=14% Similarity=0.204 Sum_probs=106.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC------cEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR------AVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDK 610 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r------~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dk 610 (932)
+++|+|++|+|||+|++++++.+.. .+|.+... ....+..++... ....+.- ...+-.+||||+|+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee-f~~el~~al~~~-~~~~f~~-----~y~~~DLLlIDDIq~ 388 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE-FTNEFINSIRDG-KGDSFRR-----RYREMDILLVDDIQF 388 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH-HHHHHHHHHHhc-cHHHHHH-----HhhcCCEEEEehhcc
Confidence 5999999999999999999986532 23332110 000111111110 0001100 012336899999999
Q ss_pred cCcch--hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEe-cCCCC
Q 002353 611 MNDQD--RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVV-KDVVD 687 (932)
Q Consensus 611 m~~~~--~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l-~D~~d 687 (932)
+.... +..|+..++.-. ..+..||.|+|.....+ -.+.+.|.|||.--.++ ...++
T Consensus 389 l~gke~tqeeLF~l~N~l~------------e~gk~IIITSd~~P~eL---------~~l~~rL~SRf~~GLvv~I~~PD 447 (617)
T PRK14086 389 LEDKESTQEEFFHTFNTLH------------NANKQIVLSSDRPPKQL---------VTLEDRLRNRFEWGLITDVQPPE 447 (617)
T ss_pred ccCCHHHHHHHHHHHHHHH------------hcCCCEEEecCCChHhh---------hhccHHHHhhhhcCceEEcCCCC
Confidence 86543 455666665321 11235677887654221 25778899999654433 01222
Q ss_pred hhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHH
Q 002353 688 PVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTH 766 (932)
Q Consensus 688 ~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~ 766 (932)
. +....++. .++. -...+++++.++|..
T Consensus 448 ~--------------------------------------------------EtR~aIL~kka~~-r~l~l~~eVi~yLa~ 476 (617)
T PRK14086 448 L--------------------------------------------------ETRIAILRKKAVQ-EQLNAPPEVLEFIAS 476 (617)
T ss_pred H--------------------------------------------------HHHHHHHHHHHHh-cCCCCCHHHHHHHHH
Confidence 1 11222222 1222 245678888888776
Q ss_pred HHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 002353 767 VYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVL 819 (932)
Q Consensus 767 ~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~ 819 (932)
. +.-++|.|+.++.--.++|.+.. ..|+...+.++++-+
T Consensus 477 r-------------~~rnvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~~ 515 (617)
T PRK14086 477 R-------------ISRNIRELEGALIRVTAFASLNR-QPVDLGLTEIVLRDL 515 (617)
T ss_pred h-------------ccCCHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHh
Confidence 4 34578999988877777777754 457877777666543
No 193
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.35 E-value=9.2e-06 Score=87.03 Aligned_cols=186 Identities=19% Similarity=0.266 Sum_probs=103.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCc--ccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGA--SAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQ 614 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~s--s~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~ 614 (932)
...+.||+|||||...|.+++.+.+.+++-.... ....+. .+-.|+. ..|..+|+|||++++.+
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~------------ril~G~~--~~GaW~cfdefnrl~~~ 99 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLS------------RILKGLA--QSGAWLCFDEFNRLSEE 99 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHH------------HHHHHHH--HHT-EEEEETCCCSSHH
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHH------------HHHHHHh--hcCchhhhhhhhhhhHH
Confidence 4568999999999999999999999877632111 111000 0111211 13567999999999988
Q ss_pred hhhhH-------HHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCC
Q 002353 615 DRVSI-------HEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVD 687 (932)
Q Consensus 615 ~~~~L-------~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d 687 (932)
....+ ..++..+.-.+.-.|....++..+.+..+.||.. .....||+.|..-|--+..+. ||
T Consensus 100 vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y---------~gr~~LP~nLk~lFRpvam~~--PD 168 (231)
T PF12774_consen 100 VLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGY---------AGRSELPENLKALFRPVAMMV--PD 168 (231)
T ss_dssp HHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-C---------CCC--S-HHHCTTEEEEE--S----
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeecccc---------CCcccCCHhHHHHhheeEEeC--CC
Confidence 65544 4455444444455788888899999999999853 223378999988887776641 22
Q ss_pred hhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHH
Q 002353 688 PVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHV 767 (932)
Q Consensus 688 ~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~ 767 (932)
. ..|++-.|-.+-. .=.+....+|..+
T Consensus 169 ~---~~I~ei~L~s~GF--------------------------------------------------~~a~~La~kl~~l 195 (231)
T PF12774_consen 169 L---SLIAEILLLSQGF--------------------------------------------------KDAKSLAKKLVSL 195 (231)
T ss_dssp H---HHHHHHHHHCCCT--------------------------------------------------SSHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHcCc--------------------------------------------------hhHHHHHHHHHHH
Confidence 1 3344444432210 0011234455566
Q ss_pred HHHHHhcccCCCCcccCHHHHHHHHHHHHHHHH
Q 002353 768 YAELRRESSHGQGVPIAVRHIESMIRMSEAHAR 800 (932)
Q Consensus 768 Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Ak 800 (932)
|..++..-.....+-...|.+.+++++|-..-|
T Consensus 196 ~~l~~~~lS~q~hydfgLRalk~vl~~a~~~kr 228 (231)
T PF12774_consen 196 FQLCKEQLSKQDHYDFGLRALKSVLRMAGSLKR 228 (231)
T ss_dssp HHHHHHCS-SSTT---SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccCccccccHHHHHHHHHHHHHHhc
Confidence 655555433334566789999999999876543
No 194
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.2e-06 Score=93.86 Aligned_cols=131 Identities=24% Similarity=0.307 Sum_probs=77.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCc--ccchhhhccCceecc---CCCeeeecccccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDP--VTREWTLEGGALVLA---DRGICLIDEFDKM 611 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~--~~g~~~le~Gal~lA---d~GIl~IDE~dkm 611 (932)
.|+|+|+||||||.||+++|+..... +.-.+++-.-.. ..|- .+.--.+..| .-.|+||||||.+
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSAT---------FlRvvGseLiQkylGdGp-klvRqlF~vA~e~apSIvFiDEIdAi 290 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSAT---------FLRVVGSELIQKYLGDGP-KLVRELFRVAEEHAPSIVFIDEIDAI 290 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchh---------hhhhhhHHHHHHHhccch-HHHHHHHHHHHhcCCceEEeehhhhh
Confidence 79999999999999999999764221 111111100000 0010 0000011112 2369999999987
Q ss_pred Ccc-----------hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccE
Q 002353 612 NDQ-----------DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDV 678 (932)
Q Consensus 612 ~~~-----------~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDl 678 (932)
... .|..+++.+.|- .|... ..++.||-|||.+. .|+++|++ |.|-
T Consensus 291 GtKRyds~SggerEiQrtmLELLNQl------dGFds--rgDvKvimATnrie-------------~LDPaLiRPGrIDr 349 (440)
T KOG0726|consen 291 GTKRYDSNSGGEREIQRTMLELLNQL------DGFDS--RGDVKVIMATNRIE-------------TLDPALIRPGRIDR 349 (440)
T ss_pred ccccccCCCccHHHHHHHHHHHHHhc------cCccc--cCCeEEEEeccccc-------------ccCHhhcCCCcccc
Confidence 543 456778888753 22211 45678999999987 78999987 7876
Q ss_pred EEEecCCCChhHhHHHHHHHHhhcc
Q 002353 679 LCVVKDVVDPVVDEMLAKFVIDSHF 703 (932)
Q Consensus 679 i~~l~D~~d~~~D~~La~~vl~~h~ 703 (932)
-+.+ ..| |+.--++|+..|.
T Consensus 350 KIef-~~p----De~TkkkIf~IHT 369 (440)
T KOG0726|consen 350 KIEF-PLP----DEKTKKKIFQIHT 369 (440)
T ss_pred cccc-CCC----chhhhceeEEEee
Confidence 6665 333 3333445555554
No 195
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=7e-06 Score=93.69 Aligned_cols=206 Identities=18% Similarity=0.193 Sum_probs=121.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc------EEecCCC-cccc----cccceeecCcccchhhhc-----cCcee-ccC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA------VYTTGKG-ASAV----GLTAAVHKDPVTREWTLE-----GGALV-LAD 599 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~------v~~~g~~-ss~~----gLta~v~kd~~~g~~~le-----~Gal~-lAd 599 (932)
|++++|+||||||..++++.+..... +|..... .+.. .+...+..-+.+|.-..+ ...+. ...
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~ 123 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGK 123 (366)
T ss_pred cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCC
Confidence 79999999999999999998864322 3432211 1111 111111122222211110 00111 112
Q ss_pred CCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEE
Q 002353 600 RGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVL 679 (932)
Q Consensus 600 ~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli 679 (932)
.-|+.|||+|.|.......|+....-.. .+ ..++.+|+.+|-..- .-.+.+.+.|+|-..
T Consensus 124 ~~IvvLDEid~L~~~~~~~LY~L~r~~~-----~~-----~~~v~vi~i~n~~~~----------~~~ld~rv~s~l~~~ 183 (366)
T COG1474 124 TVIVILDEVDALVDKDGEVLYSLLRAPG-----EN-----KVKVSIIAVSNDDKF----------LDYLDPRVKSSLGPS 183 (366)
T ss_pred eEEEEEcchhhhccccchHHHHHHhhcc-----cc-----ceeEEEEEEeccHHH----------HHHhhhhhhhccCcc
Confidence 2389999999999887666666665322 11 567899999996420 113334444443222
Q ss_pred EEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcC-CCcCC
Q 002353 680 CVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNV-FPRLH 757 (932)
Q Consensus 680 ~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~-~P~Ls 757 (932)
-+. -++.+.+.|..++. -++..+ ...++
T Consensus 184 ~I~--------------------------------------------------F~pY~a~el~~Il~~R~~~~~~~~~~~ 213 (366)
T COG1474 184 EIV--------------------------------------------------FPPYTAEELYDILRERVEEGFSAGVID 213 (366)
T ss_pred eee--------------------------------------------------eCCCCHHHHHHHHHHHHHhhccCCCcC
Confidence 211 11223344444444 222222 44888
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhh
Q 002353 758 DPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDS 822 (932)
Q Consensus 758 ~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S 822 (932)
+.+.+.++.... ...+.+|..-.++|.|--.|.-+.+..|+.+|+..|..-+...
T Consensus 214 ~~vl~lia~~~a----------~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~~ 268 (366)
T COG1474 214 DDVLKLIAALVA----------AESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIERD 268 (366)
T ss_pred ccHHHHHHHHHH----------HcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhHH
Confidence 889988887755 2334899999999999999999999999999999996655444
No 196
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.2e-05 Score=89.52 Aligned_cols=135 Identities=24% Similarity=0.358 Sum_probs=85.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe-cCCCcccccccc-eeecCcccchhhhccCceeccCCC-eeeeccccc---
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT-TGKGASAVGLTA-AVHKDPVTREWTLEGGALVLADRG-ICLIDEFDK--- 610 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~-~g~~ss~~gLta-~v~kd~~~g~~~le~Gal~lAd~G-Il~IDE~dk--- 610 (932)
|||++||||||||++|+-++..+.-..-. +|.. .+.|-+ +|.+-..--.|..+ +.+| ++||||.|-
T Consensus 386 NilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGD--VAPlG~qaVTkiH~lFDWakk------S~rGLllFIDEADAFLc 457 (630)
T KOG0742|consen 386 NILFYGPPGTGKTMFARELARHSGLDYAIMTGGD--VAPLGAQAVTKIHKLFDWAKK------SRRGLLLFIDEADAFLC 457 (630)
T ss_pred heeeeCCCCCCchHHHHHHHhhcCCceehhcCCC--ccccchHHHHHHHHHHHHHhh------cccceEEEehhhHHHHH
Confidence 99999999999999999999886543111 2211 111111 11111111123322 2334 689999874
Q ss_pred ------cCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecC
Q 002353 611 ------MNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKD 684 (932)
Q Consensus 611 ------m~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D 684 (932)
|++..+.+|.-.|= +.|.. .-++.++.|+|.++ .|+.+.-+|||-++-+ +
T Consensus 458 eRnktymSEaqRsaLNAlLf-------RTGdq---SrdivLvlAtNrpg-------------dlDsAV~DRide~veF-p 513 (630)
T KOG0742|consen 458 ERNKTYMSEAQRSALNALLF-------RTGDQ---SRDIVLVLATNRPG-------------DLDSAVNDRIDEVVEF-P 513 (630)
T ss_pred HhchhhhcHHHHHHHHHHHH-------Hhccc---ccceEEEeccCCcc-------------chhHHHHhhhhheeec-C
Confidence 66666666655442 11211 22466778899876 7888999999988876 7
Q ss_pred CCChhHhHHHHHHHHhhcc
Q 002353 685 VVDPVVDEMLAKFVIDSHF 703 (932)
Q Consensus 685 ~~d~~~D~~La~~vl~~h~ 703 (932)
.|..++..+|....++.|.
T Consensus 514 LPGeEERfkll~lYlnkyi 532 (630)
T KOG0742|consen 514 LPGEEERFKLLNLYLNKYI 532 (630)
T ss_pred CCChHHHHHHHHHHHHHHh
Confidence 7888888888877777765
No 197
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.31 E-value=3.2e-06 Score=99.20 Aligned_cols=193 Identities=13% Similarity=0.185 Sum_probs=107.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC------CcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ------RAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDK 610 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~------r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dk 610 (932)
+++|+|++|+|||+|++++++.+. +.+|.+... ....+..+.... .+ .++.-.-...+-.+++|||++.
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~-f~~~~~~~l~~~--~~--~~~~~~~~~~~~dvLiIDDiq~ 217 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDE-FARKAVDILQKT--HK--EIEQFKNEICQNDVLIIDDVQF 217 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH-HHHHHHHHHHHh--hh--HHHHHHHHhccCCEEEEecccc
Confidence 699999999999999999987432 112222100 000000000000 00 0000000012345999999998
Q ss_pred cCc--chhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccE--EEEecCCC
Q 002353 611 MND--QDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDV--LCVVKDVV 686 (932)
Q Consensus 611 m~~--~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDl--i~~l~D~~ 686 (932)
+.. ..+..|+..+.... ..+..||.|+|..+. ..-.+.+.|.|||.- ++-+ .
T Consensus 218 l~~k~~~~e~lf~l~N~~~------------~~~k~iIltsd~~P~---------~l~~l~~rL~SR~~~Gl~~~L-~-- 273 (450)
T PRK14087 218 LSYKEKTNEIFFTIFNNFI------------ENDKQLFFSSDKSPE---------LLNGFDNRLITRFNMGLSIAI-Q-- 273 (450)
T ss_pred ccCCHHHHHHHHHHHHHHH------------HcCCcEEEECCCCHH---------HHhhccHHHHHHHhCCceecc-C--
Confidence 874 34556666665321 111246777775431 112467888888863 2222 1
Q ss_pred ChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhh-cCCCcCChhHHHHH
Q 002353 687 DPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKL-NVFPRLHDPDMEKL 764 (932)
Q Consensus 687 d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~-~~~P~Ls~ea~~~L 764 (932)
.++.+....|+. .++. .+...+++++.+.|
T Consensus 274 ------------------------------------------------~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~I 305 (450)
T PRK14087 274 ------------------------------------------------KLDNKTATAIIKKEIKNQNIKQEVTEEAINFI 305 (450)
T ss_pred ------------------------------------------------CcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 123334444444 2221 12236889999888
Q ss_pred HHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhC-CCCcCHHHHHHHHHHH
Q 002353 765 THVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRL-RQHVTQEDVNMAIRVL 819 (932)
Q Consensus 765 ~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~l-r~~Vt~~Dv~~AI~l~ 819 (932)
... +..++|.|++++....+.|.+.. ...|+.+.|..++.-+
T Consensus 306 a~~-------------~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 306 SNY-------------YSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHc-------------cCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 874 45789999999976666676653 2678999888887643
No 198
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=1.2e-06 Score=100.72 Aligned_cols=152 Identities=15% Similarity=0.178 Sum_probs=85.8
Q ss_pred cccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcE---EecCCCcccccccc
Q 002353 501 APSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAV---YTTGKGASAVGLTA 577 (932)
Q Consensus 501 ap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v---~~~g~~ss~~gLta 577 (932)
...|+||+.+++.|.-++..+.......+.++ .-.+||+||||+|||.+|+.+++.+.-.. ..+|.-.+-..+..
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l--~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~ 81 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGM--THAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLA 81 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCC--CeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhc
Confidence 34688999999998877776531100000000 11599999999999999999988642110 01111000000000
Q ss_pred e-------eecC-cccc-----hhhhccC-ceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccce
Q 002353 578 A-------VHKD-PVTR-----EWTLEGG-ALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARC 643 (932)
Q Consensus 578 ~-------v~kd-~~~g-----~~~le~G-al~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~ 643 (932)
+ +..+ ...+ ...-... .-..+...|++|||++.|++..+++|+..||+-. +..+
T Consensus 82 ~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~------------~~~~ 149 (394)
T PRK07940 82 GTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP------------PRTV 149 (394)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC------------CCCe
Confidence 0 0000 0000 0000000 0012355699999999999999999999998621 1224
Q ss_pred EEEeeeCCCCCccCCCCCcccccCCChhhhccccEEE
Q 002353 644 SVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLC 680 (932)
Q Consensus 644 sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~ 680 (932)
.|++|+|+. .+.++++||+-.+.
T Consensus 150 fIL~a~~~~--------------~llpTIrSRc~~i~ 172 (394)
T PRK07940 150 WLLCAPSPE--------------DVLPTIRSRCRHVA 172 (394)
T ss_pred EEEEECChH--------------HChHHHHhhCeEEE
Confidence 567777753 68899999995444
No 199
>PRK05642 DNA replication initiation factor; Validated
Probab=98.28 E-value=2.8e-05 Score=83.64 Aligned_cols=177 Identities=14% Similarity=0.121 Sum_probs=97.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC----CcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ----RAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMN 612 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~----r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~ 612 (932)
+++|+|++|+|||+|++++++.+. +.+|.+. ..+... ...+ .+ . ..+.-++|||+++.+.
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-----~~~~~~------~~~~-~~--~--~~~~d~LiiDDi~~~~ 110 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-----AELLDR------GPEL-LD--N--LEQYELVCLDDLDVIA 110 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-----HHHHhh------hHHH-HH--h--hhhCCEEEEechhhhc
Confidence 789999999999999999986432 2233221 011100 0000 00 0 1122489999999875
Q ss_pred cc--hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhcccc--EEEEecCCCCh
Q 002353 613 DQ--DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFD--VLCVVKDVVDP 688 (932)
Q Consensus 613 ~~--~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFD--li~~l~D~~d~ 688 (932)
.. .+..|+..+..-. ..+..+|.|+|.....+ ..+.+.|.|||- +++.+ ..
T Consensus 111 ~~~~~~~~Lf~l~n~~~------------~~g~~ilits~~~p~~l---------~~~~~~L~SRl~~gl~~~l-~~--- 165 (234)
T PRK05642 111 GKADWEEALFHLFNRLR------------DSGRRLLLAASKSPREL---------PIKLPDLKSRLTLALVFQM-RG--- 165 (234)
T ss_pred CChHHHHHHHHHHHHHH------------hcCCEEEEeCCCCHHHc---------CccCccHHHHHhcCeeeec-CC---
Confidence 43 3455666665311 11224555555433211 134678999985 44443 11
Q ss_pred hHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHHH
Q 002353 689 VVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTHV 767 (932)
Q Consensus 689 ~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~ 767 (932)
++.+.+..++. .|... .-.+++++.+.|.+.
T Consensus 166 -----------------------------------------------~~~e~~~~il~~ka~~~-~~~l~~ev~~~L~~~ 197 (234)
T PRK05642 166 -----------------------------------------------LSDEDKLRALQLRASRR-GLHLTDEVGHFILTR 197 (234)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHh
Confidence 12222222232 23321 345888888888874
Q ss_pred HHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 002353 768 YAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAI 816 (932)
Q Consensus 768 Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI 816 (932)
++.++|.|++++..-.. +.+.-...||..=|.+++
T Consensus 198 -------------~~~d~r~l~~~l~~l~~-~~l~~~~~it~~~~~~~L 232 (234)
T PRK05642 198 -------------GTRSMSALFDLLERLDQ-ASLQAQRKLTIPFLKETL 232 (234)
T ss_pred -------------cCCCHHHHHHHHHHHHH-HHHHcCCcCCHHHHHHHh
Confidence 56789999998886653 555444557876666553
No 200
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.26 E-value=9.5e-06 Score=101.34 Aligned_cols=135 Identities=17% Similarity=0.282 Sum_probs=101.0
Q ss_pred CceEEEeCCCCchHHHHHHHHHHhCCCcEEec--CCCcccccccceeecCcccchhhhccCceecc--CCCeeeeccccc
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKTGQRAVYTT--GKGASAVGLTAAVHKDPVTREWTLEGGALVLA--DRGICLIDEFDK 610 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~~~r~v~~~--g~~ss~~gLta~v~kd~~~g~~~le~Gal~lA--d~GIl~IDE~dk 610 (932)
..++||-||+.+|||.+..|+++...+.+.-. +..+......++.+.+. +|....+.|.||-| .|-.+++||++-
T Consensus 888 ~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd-~G~lsFkEGvLVeAlR~GyWIVLDELNL 966 (4600)
T COG5271 888 NFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDD-DGSLSFKEGVLVEALRRGYWIVLDELNL 966 (4600)
T ss_pred CCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecC-CCceeeehhHHHHHHhcCcEEEeecccc
Confidence 46999999999999999999999988776542 22333444455544442 45567788998876 566899999999
Q ss_pred cCcchhhhHHHHHhh-ceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhcccc
Q 002353 611 MNDQDRVSIHEAMEQ-QSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFD 677 (932)
Q Consensus 611 m~~~~~~~L~eamEq-q~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFD 677 (932)
.+.+...+|.+.+++ +.+.|.....+..-...+.+.||-||++| |-..+ .|+.++..||-
T Consensus 967 ApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~-YgGRK------~LSrAFRNRFl 1027 (4600)
T COG5271 967 APTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGG-YGGRK------GLSRAFRNRFL 1027 (4600)
T ss_pred CcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCcc-ccchH------HHHHHHHhhhH
Confidence 999999999999986 55666666566666778999999999753 32222 67888888884
No 201
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.24 E-value=1.5e-06 Score=82.69 Aligned_cols=128 Identities=21% Similarity=0.272 Sum_probs=67.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc---EE-ecCCCcccccccc----ee--ecCcccchhhhccCceeccCC---Cee
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA---VY-TTGKGASAVGLTA----AV--HKDPVTREWTLEGGALVLADR---GIC 603 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~---v~-~~g~~ss~~gLta----~v--~kd~~~g~~~le~Gal~lAd~---GIl 603 (932)
+++|+|+||||||++++.+++.+... ++ ............. .. ......+.-.. ...+..+.. +++
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vi 82 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRL-RLALALARKLKPDVL 82 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHH-HHHHHHHHhcCCCEE
Confidence 89999999999999999999987664 22 2211111000000 00 00000111111 122333333 899
Q ss_pred eeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEe
Q 002353 604 LIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVV 682 (932)
Q Consensus 604 ~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l 682 (932)
+|||++.+.............. ............+.+|+++|+ . ....+..+..|++..+.+
T Consensus 83 iiDei~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~-~-----------~~~~~~~~~~~~~~~~~~ 144 (148)
T smart00382 83 ILDEITSLLDAEQEALLLLLEE-----LRLLLLLKSEKNLTVILTTND-E-----------KDLGPALLRRRFDRRIVL 144 (148)
T ss_pred EEECCcccCCHHHHHHHHhhhh-----hHHHHHHHhcCCCEEEEEeCC-C-----------ccCchhhhhhccceEEEe
Confidence 9999999988765543332110 000001112345789999996 1 113455566678777665
No 202
>PRK04132 replication factor C small subunit; Provisional
Probab=98.20 E-value=2.3e-05 Score=97.30 Aligned_cols=115 Identities=15% Similarity=0.155 Sum_probs=72.1
Q ss_pred ceEEEeC--CCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcc-----cchhhhccCceeccCCCeeeeccc
Q 002353 536 INVLLLG--DPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPV-----TREWTLEGGALVLADRGICLIDEF 608 (932)
Q Consensus 536 invLLvG--dPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~-----~g~~~le~Gal~lAd~GIl~IDE~ 608 (932)
+|-+.-| |.+.|||++|+++++.+... +.+.....+.|+..+... ...+... ..+..+...|++|||+
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~----~~~~~~lElNASd~rgid~IR~iIk~~a~~-~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGE----NWRHNFLELNASDERGINVIREKVKEFART-KPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcc----cccCeEEEEeCCCcccHHHHHHHHHHHHhc-CCcCCCCCEEEEEECc
Confidence 3556778 89999999999999875211 111122333333211100 0000000 0011112359999999
Q ss_pred cccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEE
Q 002353 609 DKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCV 681 (932)
Q Consensus 609 dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~ 681 (932)
|.|+...|.+|+..||.- +..|.+|.+||+.. .+.++|.||+-.+-+
T Consensus 640 D~Lt~~AQnALLk~lEep-------------~~~~~FILi~N~~~-------------kIi~tIrSRC~~i~F 686 (846)
T PRK04132 640 DALTQDAQQALRRTMEMF-------------SSNVRFILSCNYSS-------------KIIEPIQSRCAIFRF 686 (846)
T ss_pred ccCCHHHHHHHHHHhhCC-------------CCCeEEEEEeCChh-------------hCchHHhhhceEEeC
Confidence 999999999999999952 23467889999865 788999999855443
No 203
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.19 E-value=2.3e-05 Score=85.30 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHhhc----CCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHH
Q 002353 736 LPQDLLKKYITYAKLN----VFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQED 811 (932)
Q Consensus 736 i~~~~LrkyI~yar~~----~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~D 811 (932)
++.+.++.|+...-.. -.+.+++++.+.|.+. ..+.+|.+..+...+...|-......|+.++
T Consensus 192 l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~-------------s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~ 258 (269)
T TIGR03015 192 LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRF-------------SRGIPRLINILCDRLLLSAFLEEKREIGGEE 258 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHH-------------cCCcccHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 5556666666622111 1246888888888875 2345678889999998888888999999999
Q ss_pred HHHHHHHH
Q 002353 812 VNMAIRVL 819 (932)
Q Consensus 812 v~~AI~l~ 819 (932)
|..|+.-+
T Consensus 259 v~~~~~~~ 266 (269)
T TIGR03015 259 VREVIAEI 266 (269)
T ss_pred HHHHHHHh
Confidence 99997654
No 204
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=4.5e-06 Score=87.71 Aligned_cols=134 Identities=21% Similarity=0.283 Sum_probs=79.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceecc---CCCeeeeccccccCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLA---DRGICLIDEFDKMND 613 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lA---d~GIl~IDE~dkm~~ 613 (932)
.|||+||||||||.||++++....-. |.--.|+ .|.-... ..|.. ..--.++.| .-.|+|.||||.+..
T Consensus 183 GvlLygppgtGktLlaraVahht~c~-firvsgs---elvqk~i---gegsr-mvrelfvmarehapsiifmdeidsigs 254 (404)
T KOG0728|consen 183 GVLLYGPPGTGKTLLARAVAHHTDCT-FIRVSGS---ELVQKYI---GEGSR-MVRELFVMAREHAPSIIFMDEIDSIGS 254 (404)
T ss_pred ceEEecCCCCchhHHHHHHHhhcceE-EEEechH---HHHHHHh---hhhHH-HHHHHHHHHHhcCCceEeeeccccccc
Confidence 79999999999999999999765322 2211111 1111000 00111 011123333 236999999998853
Q ss_pred -----------chhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEEE
Q 002353 614 -----------QDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLC 680 (932)
Q Consensus 614 -----------~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~ 680 (932)
+.|..+++.+.|- .|...+ .++.||-|||.+. -|+++||+ |.|--+
T Consensus 255 ~r~e~~~ggdsevqrtmlellnql------dgfeat--knikvimatnrid-------------ild~allrpgridrki 313 (404)
T KOG0728|consen 255 SRVESGSGGDSEVQRTMLELLNQL------DGFEAT--KNIKVIMATNRID-------------ILDPALLRPGRIDRKI 313 (404)
T ss_pred ccccCCCCccHHHHHHHHHHHHhc------cccccc--cceEEEEeccccc-------------cccHhhcCCCcccccc
Confidence 3466788888763 333322 3467899999976 67888887 777766
Q ss_pred EecCCCChhHhHHHHHHHHhhccC
Q 002353 681 VVKDVVDPVVDEMLAKFVIDSHFK 704 (932)
Q Consensus 681 ~l~D~~d~~~D~~La~~vl~~h~~ 704 (932)
-+ ..|++. -.-.||+.|.+
T Consensus 314 ef-p~p~e~----ar~~ilkihsr 332 (404)
T KOG0728|consen 314 EF-PPPNEE----ARLDILKIHSR 332 (404)
T ss_pred cC-CCCCHH----HHHHHHHHhhh
Confidence 65 223322 22346676654
No 205
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.17 E-value=7.4e-06 Score=95.94 Aligned_cols=51 Identities=10% Similarity=0.069 Sum_probs=37.1
Q ss_pred cCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 002353 755 RLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVL 819 (932)
Q Consensus 755 ~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~ 819 (932)
.+++++.+.|.+. ++.++|.|++++..-.+.|.+..+ .+|...+.+++.-+
T Consensus 282 ~l~~ev~~~Ia~~-------------~~~~~R~L~g~l~~l~~~~~~~~~-~it~~~a~~~L~~~ 332 (440)
T PRK14088 282 ELPEEVLNFVAEN-------------VDDNLRRLRGAIIKLLVYKETTGE-EVDLKEAILLLKDF 332 (440)
T ss_pred CCCHHHHHHHHhc-------------cccCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 5777777777763 456899999988877788877654 48877777776543
No 206
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.17 E-value=7e-06 Score=87.34 Aligned_cols=173 Identities=18% Similarity=0.230 Sum_probs=95.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC------CcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ------RAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDK 610 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~------r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dk 610 (932)
+++|+|++|+|||+|+++++.... +.+|.+... ....+..++. ......+ . -.+..--++|||+++.
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~-f~~~~~~~~~-~~~~~~~--~---~~~~~~DlL~iDDi~~ 108 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE-FIREFADALR-DGEIEEF--K---DRLRSADLLIIDDIQF 108 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH-HHHHHHHHHH-TTSHHHH--H---HHHCTSSEEEEETGGG
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH-HHHHHHHHHH-cccchhh--h---hhhhcCCEEEEecchh
Confidence 699999999999999999987532 223322110 0000000111 0000000 0 0122446999999999
Q ss_pred cCcch--hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEec-CCCC
Q 002353 611 MNDQD--RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVK-DVVD 687 (932)
Q Consensus 611 m~~~~--~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~-D~~d 687 (932)
+.... +..|+..++.-. .....+|.|++..+... ..+.+.|.|||.--.++. ..|
T Consensus 109 l~~~~~~q~~lf~l~n~~~------------~~~k~li~ts~~~P~~l---------~~~~~~L~SRl~~Gl~~~l~~p- 166 (219)
T PF00308_consen 109 LAGKQRTQEELFHLFNRLI------------ESGKQLILTSDRPPSEL---------SGLLPDLRSRLSWGLVVELQPP- 166 (219)
T ss_dssp GTTHHHHHHHHHHHHHHHH------------HTTSEEEEEESS-TTTT---------TTS-HHHHHHHHCSEEEEE----
T ss_pred hcCchHHHHHHHHHHHHHH------------hhCCeEEEEeCCCCccc---------cccChhhhhhHhhcchhhcCCC-
Confidence 98765 566666665421 11224566665544221 146788999986533320 111
Q ss_pred hhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHH
Q 002353 688 PVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTH 766 (932)
Q Consensus 688 ~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~ 766 (932)
+.+..++++. .|+. -.-.+++++.+.|.+
T Consensus 167 -------------------------------------------------d~~~r~~il~~~a~~-~~~~l~~~v~~~l~~ 196 (219)
T PF00308_consen 167 -------------------------------------------------DDEDRRRILQKKAKE-RGIELPEEVIEYLAR 196 (219)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHH-TT--S-HHHHHHHHH
T ss_pred -------------------------------------------------CHHHHHHHHHHHHHH-hCCCCcHHHHHHHHH
Confidence 2233333333 3333 244589999988887
Q ss_pred HHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHh
Q 002353 767 VYAELRRESSHGQGVPIAVRHIESMIRMSEAHARM 801 (932)
Q Consensus 767 ~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl 801 (932)
. ++-++|.|++++.--.++|++
T Consensus 197 ~-------------~~~~~r~L~~~l~~l~~~~~~ 218 (219)
T PF00308_consen 197 R-------------FRRDVRELEGALNRLDAYAQL 218 (219)
T ss_dssp H-------------TTSSHHHHHHHHHHHHHHHHH
T ss_pred h-------------hcCCHHHHHHHHHHHHHHhhc
Confidence 4 457899999999988888875
No 207
>PHA01747 putative ATP-dependent protease
Probab=98.16 E-value=5.7e-06 Score=91.89 Aligned_cols=169 Identities=14% Similarity=0.185 Sum_probs=102.2
Q ss_pred HHHHHHhhcccccCh-HHHHH--HHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCC
Q 002353 493 GERIIKSIAPSIYGH-EDIKT--ALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKG 569 (932)
Q Consensus 493 ~~~l~~siap~I~G~-~~vK~--aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ 569 (932)
.+.|+.|+--.--+. ...|. .+|.-|+--+.... + ..+.|++=.||.|||||++.+-+.+++|.++ +|..
T Consensus 150 iDlLlrSiGyeP~~~~~r~k~~~l~L~RLiPlVE~~~-~----~~NyNliELgPRGTGKS~~f~eis~fsp~~i--SGG~ 222 (425)
T PHA01747 150 YDDLLAAFGYDTDKMIRNDAVNRLTLPRLLPLFTSPV-S----KRPVHIIELSNRGTGKTTTFVILQELFNFRY--YTEP 222 (425)
T ss_pred HHHHHHhcCCCccccCHHHHHHHHHHHhhhhheeccC-C----CCCeeEEEecCCCCChhhHHHHhhhcCCcee--eCCC
Confidence 577777765333332 12333 45544444332111 1 1456999999999999999999999888876 5555
Q ss_pred cccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcch----hhhHHHHHhhceeeeeccceeE--eeccce
Q 002353 570 ASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQD----RVSIHEAMEQQSISISKAGIVT--SLQARC 643 (932)
Q Consensus 570 ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~----~~~L~eamEqq~isi~kagi~~--~l~ar~ 643 (932)
.|.+.|..... ++ ..|.+.+.| ++++||+..+.... -..|...|+.|..+-.+.+... +.++.+
T Consensus 223 ~TvA~LFyN~~----t~----~~GLVg~~D--~VaFDEVa~i~f~~~kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a~a 292 (425)
T PHA01747 223 PTYANLVYDAK----TN----ALGLVFLSN--GLIFDEIQTWKDSNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCI 292 (425)
T ss_pred CchHHheEecC----CC----ceeEEeecc--EEEEEccccccCCCHHHHHHHHHHHhhcceeecCCCCcccchhhccce
Confidence 66665654332 22 345555444 78999999987443 3455667888886543332222 678899
Q ss_pred EEEeeeCCCC---CccCCCC---C-ccc-cc--CCChhhhccccE
Q 002353 644 SVIAAANPVG---GRYDSSK---T-FSE-NV--ELTDPIISRFDV 678 (932)
Q Consensus 644 sIIAAaNp~~---Gry~~~~---~-~~~-ni--~L~~~LLsRFDl 678 (932)
+++-+.|+.. ++|.... . +.+ .+ .++.|||+||-+
T Consensus 293 siVf~GNin~~~l~~~~~~~~l~~~Lp~~~~~r~~~sA~LDRIhi 337 (425)
T PHA01747 293 PIIFAGNPDSSTLDTYQTPNYIKNYLVSYELFQSLTKAILDRIAI 337 (425)
T ss_pred eEEEecCCCCccccccccchhHHHhcchhhhhcccchHHhhhhhh
Confidence 9999999863 2332110 0 101 01 237889999973
No 208
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=5e-05 Score=86.39 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=39.6
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCC
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
..++||+.++..+.-++-.|. ..| .+||+|++|+||+++++.+++.+.
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~gr-----l~h------a~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGK-----LHH------ALLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCe------eEeeECCCCCCHHHHHHHHHHHHc
Confidence 357999999999999988762 112 599999999999999999998753
No 209
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.00019 Score=87.71 Aligned_cols=208 Identities=15% Similarity=0.165 Sum_probs=119.8
Q ss_pred hcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecC-CCcccc-----
Q 002353 500 IAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTG-KGASAV----- 573 (932)
Q Consensus 500 iap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g-~~ss~~----- 573 (932)
+-| +.|.+.....++--|.-...+ |-+|+|+||+|||.++..+|.-....-.... .+....
T Consensus 169 lDP-vIGRd~EI~r~iqIL~RR~KN------------NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g 235 (786)
T COG0542 169 LDP-VIGRDEEIRRTIQILSRRTKN------------NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG 235 (786)
T ss_pred CCC-CcChHHHHHHHHHHHhccCCC------------CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH
Confidence 444 446555555444444443211 8899999999999999998876433211110 111111
Q ss_pred cccceeecCcccchhhhc----cCceeccCCCeeeeccccccCcch---------hhhHHHHHhhceeeeeccceeEeec
Q 002353 574 GLTAAVHKDPVTREWTLE----GGALVLADRGICLIDEFDKMNDQD---------RVSIHEAMEQQSISISKAGIVTSLQ 640 (932)
Q Consensus 574 gLta~v~kd~~~g~~~le----~Gal~lAd~GIl~IDE~dkm~~~~---------~~~L~eamEqq~isi~kagi~~~l~ 640 (932)
.|.|+.. .-|+|.-. -..+..+.+-|+||||++.+-..- -+.|.-+|..|+
T Consensus 236 ~LvAGak---yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe------------- 299 (786)
T COG0542 236 SLVAGAK---YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE------------- 299 (786)
T ss_pred HHhcccc---ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-------------
Confidence 1222211 11222111 012233456799999998764322 122333343333
Q ss_pred cceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccch
Q 002353 641 ARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNES 720 (932)
Q Consensus 641 ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~ 720 (932)
..+|+||.... +...+.-+++|-+||--+++ +.|+.+.--.|.+-+-..+..+|..
T Consensus 300 --L~~IGATT~~E--------YRk~iEKD~AL~RRFQ~V~V--~EPs~e~ti~ILrGlk~~yE~hH~V------------ 355 (786)
T COG0542 300 --LRCIGATTLDE--------YRKYIEKDAALERRFQKVLV--DEPSVEDTIAILRGLKERYEAHHGV------------ 355 (786)
T ss_pred --eEEEEeccHHH--------HHHHhhhchHHHhcCceeeC--CCCCHHHHHHHHHHHHHHHHHccCc------------
Confidence 46789997643 23345778999999999988 6666655555544444444334432
Q ss_pred hhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCC-cCChhHHHHHHHHHHHHHhc
Q 002353 721 EEDIQVADREIDPEILPQDLLKKYITYAKLNVFP-RLHDPDMEKLTHVYAELRRE 774 (932)
Q Consensus 721 ~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P-~Ls~ea~~~L~~~Y~~lR~~ 774 (932)
.|+.+.|..-..++.+|+.- .|++.|.+.|-..-..+|-+
T Consensus 356 --------------~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~ 396 (786)
T COG0542 356 --------------RITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLE 396 (786)
T ss_pred --------------eecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhc
Confidence 25666777777777666543 78999999998887777654
No 210
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=98.10 E-value=0.00036 Score=83.48 Aligned_cols=136 Identities=18% Similarity=0.252 Sum_probs=93.5
Q ss_pred ChhhHHHHHHhhc--ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEec
Q 002353 489 DPRIGERIIKSIA--PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTT 566 (932)
Q Consensus 489 ~~~i~~~l~~sia--p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~ 566 (932)
...+.+.|+.|+- |+-+. ...|..++.-|+--+.+ +.|++=.||.|||||++.+ +++|.+...+
T Consensus 179 ~dEWid~LlrSiG~eP~~~~-~r~K~~~L~RliPlVE~----------N~Nl~ELgPrgTGKS~~y~---eiSp~~~liS 244 (675)
T TIGR02653 179 SDEWIDVLLRSVGMEPTNLE-RRTKWHLLTRLIPLVEN----------NYNLCELGPRGTGKSHVYK---ECSPNSILMS 244 (675)
T ss_pred HHHHHHHHHHhcCCCccccC-HHHHHHHHHhhhhhccc----------ccceEEECCCCCCcceeee---ccCCceEEEE
Confidence 3456788888865 55553 36777777777765433 3499999999999999987 6678899999
Q ss_pred CCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcchh---hhHHHHHhhceeeeeccceeEeeccce
Q 002353 567 GKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDR---VSIHEAMEQQSISISKAGIVTSLQARC 643 (932)
Q Consensus 567 g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~---~~L~eamEqq~isi~kagi~~~l~ar~ 643 (932)
|..+|.+.|+..... -..|.+-+- -++++||+..+.-.+. ..|...|+.|+++ +++ .+..+.+
T Consensus 245 GG~~T~A~LFyn~~~--------~~~GlVg~~--D~VaFDEva~i~f~d~d~v~imK~YM~sG~Fs--RG~--~~~~a~a 310 (675)
T TIGR02653 245 GGQTTVANLFYNMST--------RQIGLVGMW--DVVAFDEVAGIEFKDKDGVQIMKDYMASGSFA--RGK--ESIEGKA 310 (675)
T ss_pred CCccchhHeeEEcCC--------CceeEEeec--cEEEEeeccccccCCHHHHHHHHHHhhcCccc--ccc--cccccce
Confidence 888887777654432 134444333 3899999998765443 3555668888854 444 3556778
Q ss_pred EEEeeeCCC
Q 002353 644 SVIAAANPV 652 (932)
Q Consensus 644 sIIAAaNp~ 652 (932)
+++.-.|..
T Consensus 311 s~vfvGNi~ 319 (675)
T TIGR02653 311 SIVFVGNIN 319 (675)
T ss_pred eEEEEcccC
Confidence 887766653
No 211
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.06 E-value=0.00048 Score=81.57 Aligned_cols=100 Identities=14% Similarity=0.149 Sum_probs=65.9
Q ss_pred cCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChh
Q 002353 592 GGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDP 671 (932)
Q Consensus 592 ~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~ 671 (932)
.|+|..|++|++=+=|+-|.+.+....|+.+.+.+.|.. .+....++.+-.|||.||-.. |+ .|. |-.-.+|
T Consensus 248 ~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~--~~~~~~i~~D~vIiaHsNE~E--~~---~F~-~nk~nEA 319 (644)
T PRK15455 248 SGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNG--TEGIGAIPFDGIILAHSNESE--WQ---TFR-NNKNNEA 319 (644)
T ss_pred CchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccC--CCCcceeccceeEEecCCHHH--HH---HHh-cCccchh
Confidence 488999998877666999999888888888888887532 233446788899999999743 32 122 1245689
Q ss_pred hhccccEEEEecCCC-ChhHhHHHHHHHHhh
Q 002353 672 IISRFDVLCVVKDVV-DPVVDEMLAKFVIDS 701 (932)
Q Consensus 672 LLsRFDli~~l~D~~-d~~~D~~La~~vl~~ 701 (932)
|++|.-++=+ ... .-....+|-+.++..
T Consensus 320 ~~DRi~~V~V--PY~lr~~eE~kIYeKll~~ 348 (644)
T PRK15455 320 FLDRIYIVKV--PYCLRVSEEIKIYEKLLRN 348 (644)
T ss_pred hhceEEEEeC--CccCChhHHHHHHHHHhcC
Confidence 9999866433 111 222335566665543
No 212
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=6.2e-06 Score=89.38 Aligned_cols=119 Identities=22% Similarity=0.254 Sum_probs=72.6
Q ss_pred CceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCc---ccccccceeecCcccchhhhccCceeccCCCeeeecccccc
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGA---SAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKM 611 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~s---s~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm 611 (932)
...+||+||||||||.++++|+....-.+.....+. -.+|-.+-+.++-+.. +-. -..+|+|+||||..
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~y-----A~~---~~pciifmdeiDAi 237 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRY-----ARE---VIPCIIFMDEIDAI 237 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHH-----Hhh---hCceEEeehhhhhh
Confidence 337999999999999999999998765443211100 0111111111111110 000 02289999999875
Q ss_pred Cc-----------chhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccE
Q 002353 612 ND-----------QDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDV 678 (932)
Q Consensus 612 ~~-----------~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDl 678 (932)
.. ..+.+|.+.+.|- . ......++.+|.|+|... .|.+|||+ |.|-
T Consensus 238 gGRr~se~Ts~dreiqrTLMeLlnqm------d--gfd~l~rVk~ImatNrpd-------------tLdpaLlRpGRldr 296 (388)
T KOG0651|consen 238 GGRRFSEGTSSDREIQRTLMELLNQM------D--GFDTLHRVKTIMATNRPD-------------TLDPALLRPGRLDR 296 (388)
T ss_pred ccEEeccccchhHHHHHHHHHHHHhh------c--cchhcccccEEEecCCcc-------------ccchhhcCCccccc
Confidence 32 2345566665531 1 123356889999999876 78999998 8888
Q ss_pred EEEe
Q 002353 679 LCVV 682 (932)
Q Consensus 679 i~~l 682 (932)
.+.+
T Consensus 297 k~~i 300 (388)
T KOG0651|consen 297 KVEI 300 (388)
T ss_pred eecc
Confidence 8876
No 213
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.5e-05 Score=98.39 Aligned_cols=152 Identities=13% Similarity=0.120 Sum_probs=97.9
Q ss_pred hHHHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCc---EEecCC
Q 002353 492 IGERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRA---VYTTGK 568 (932)
Q Consensus 492 i~~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~---v~~~g~ 568 (932)
-+..|.+.+-..|.||+.+-.||.-++..... ...+ ..+++-+||+||.|+|||.||++++.....+ +..-+.
T Consensus 552 ~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~-gl~~---~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDm 627 (898)
T KOG1051|consen 552 RLKKLEERLHERVIGQDEAVAAIAAAIRRSRA-GLKD---PNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDM 627 (898)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHhhhc-ccCC---CCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEech
Confidence 35567788888999999999999988876421 1111 1478899999999999999999999985322 111100
Q ss_pred Cc--ccccccce---eecCcccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccce
Q 002353 569 GA--SAVGLTAA---VHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARC 643 (932)
Q Consensus 569 ~s--s~~gLta~---v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~ 643 (932)
+. ....+.++ .+.....| .-.+++-.....|+++|||+|..+..++.|+++|+.|.++-+.+- ... -.++
T Consensus 628 se~~evskligsp~gyvG~e~gg---~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr-~Vd-~kN~ 702 (898)
T KOG1051|consen 628 SEFQEVSKLIGSPPGYVGKEEGG---QLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGR-EVD-FKNA 702 (898)
T ss_pred hhhhhhhhccCCCcccccchhHH---HHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCc-Eee-ccce
Confidence 00 00011111 11000011 012234444567999999999999999999999999998754432 222 2357
Q ss_pred EEEeeeCCC
Q 002353 644 SVIAAANPV 652 (932)
Q Consensus 644 sIIAAaNp~ 652 (932)
.||.|+|-.
T Consensus 703 I~IMTsn~~ 711 (898)
T KOG1051|consen 703 IFIMTSNVG 711 (898)
T ss_pred EEEEecccc
Confidence 888898863
No 214
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=6.5e-05 Score=82.04 Aligned_cols=122 Identities=21% Similarity=0.358 Sum_probs=74.1
Q ss_pred cCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceec----------cCCC-
Q 002353 533 RGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVL----------ADRG- 601 (932)
Q Consensus 533 RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~l----------Ad~G- 601 (932)
.-+--|||.||||||||.|+|++|+.+. +.+.+...-.. .--+.-......|.-+.|.++. .+.|
T Consensus 175 t~NRliLlhGPPGTGKTSLCKaLaQkLS--IR~~~~y~~~~--liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~ 250 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTSLCKALAQKLS--IRTNDRYYKGQ--LIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGN 250 (423)
T ss_pred eeeeEEEEeCCCCCChhHHHHHHHHhhe--eeecCccccce--EEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCc
Confidence 3344699999999999999999998753 33332222111 1111111122356666666552 2344
Q ss_pred --eeeeccccccCcch---------------hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCccc
Q 002353 602 --ICLIDEFDKMNDQD---------------RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSE 664 (932)
Q Consensus 602 --Il~IDE~dkm~~~~---------------~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ 664 (932)
.++|||++.+.... -++++.-|++ + ....++-|+||+|...
T Consensus 251 lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDr----l-------K~~~NvliL~TSNl~~----------- 308 (423)
T KOG0744|consen 251 LVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDR----L-------KRYPNVLILATSNLTD----------- 308 (423)
T ss_pred EEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH----h-------ccCCCEEEEeccchHH-----------
Confidence 46799998764321 1223332321 1 1134678899999754
Q ss_pred ccCCChhhhccccEEEEe
Q 002353 665 NVELTDPIISRFDVLCVV 682 (932)
Q Consensus 665 ni~L~~~LLsRFDli~~l 682 (932)
.|+.++.+|=|+++.+
T Consensus 309 --siD~AfVDRADi~~yV 324 (423)
T KOG0744|consen 309 --SIDVAFVDRADIVFYV 324 (423)
T ss_pred --HHHHHhhhHhhheeec
Confidence 7899999999999998
No 215
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.00 E-value=9.3e-06 Score=90.60 Aligned_cols=141 Identities=15% Similarity=0.140 Sum_probs=86.3
Q ss_pred ccChHHHHHHHhhhhh-cCccccccCcccccCCce-EEEeCCCCchHHHHHHHHHHhCCCcEE---------------ec
Q 002353 504 IYGHEDIKTALALSMF-GGQEKNVKGKHRLRGDIN-VLLLGDPGTAKSQFLKYVEKTGQRAVY---------------TT 566 (932)
Q Consensus 504 I~G~~~vK~aillaL~-gg~~k~~~~~~~~Rgdin-vLLvGdPGTGKS~Lak~va~~~~r~v~---------------~~ 566 (932)
++|++.+...+..... .+ ..+ | +||.||||||||++|.++++.+.-... ..
T Consensus 3 ~~~~~~~~~~l~~~~~~~~------~~~------halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 3 LVPWQEAVKRLLVQALESG------RLP------HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred cccchhHHHHHHHHHHhcC------CCC------ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 5566555555555444 33 112 6 999999999999999999987541110 01
Q ss_pred CCCcccccccceeecCcccchhhhc----cCcee--ccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeec
Q 002353 567 GKGASAVGLTAAVHKDPVTREWTLE----GGALV--LADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQ 640 (932)
Q Consensus 567 g~~ss~~gLta~v~kd~~~g~~~le----~Gal~--lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ 640 (932)
|.......++++..+......-.++ ..... .+..-|++|||+|.|+.+.+++|+..||.- +
T Consensus 71 ~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep-------------~ 137 (325)
T COG0470 71 GNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEP-------------P 137 (325)
T ss_pred cCCCceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccC-------------C
Confidence 1122333344433332100000000 00111 234469999999999999999999999954 3
Q ss_pred cceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEe
Q 002353 641 ARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVV 682 (932)
Q Consensus 641 ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l 682 (932)
.++.+|.+||... .+.+++.||+-.+.+-
T Consensus 138 ~~~~~il~~n~~~-------------~il~tI~SRc~~i~f~ 166 (325)
T COG0470 138 KNTRFILITNDPS-------------KILPTIRSRCQRIRFK 166 (325)
T ss_pred CCeEEEEEcCChh-------------hccchhhhcceeeecC
Confidence 4567888888433 6777999999877763
No 216
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=2.6e-05 Score=88.93 Aligned_cols=137 Identities=23% Similarity=0.287 Sum_probs=83.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcc--
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQ-- 614 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~-- 614 (932)
.=||+||||||||.|.-++|+.+.-.+|-- ..+.+.+.+ .+.--.+...++.|++|.+||.--.-
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L~ydIydL--eLt~v~~n~-----------dLr~LL~~t~~kSIivIEDIDcs~~l~~ 303 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYLNYDIYDL--ELTEVKLDS-----------DLRHLLLATPNKSILLIEDIDCSFDLRE 303 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhcCCceEEe--eeccccCcH-----------HHHHHHHhCCCCcEEEEeeccccccccc
Confidence 489999999999999999999998888752 111121111 13222344567889999999975210
Q ss_pred hhhhHHHHHh--hceeeee-----ccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEEEEecCC
Q 002353 615 DRVSIHEAME--QQSISIS-----KAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLCVVKDV 685 (932)
Q Consensus 615 ~~~~L~eamE--qq~isi~-----kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~~l~D~ 685 (932)
.+..=.+..+ ...|+++ -.|....--..-.||.|||-.. .|+|||++ |.|+.+.+ ..
T Consensus 304 ~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E-------------kLDPALlRpGRmDmhI~m-gy 369 (457)
T KOG0743|consen 304 RRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE-------------KLDPALLRPGRMDMHIYM-GY 369 (457)
T ss_pred ccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh-------------hcCHhhcCCCcceeEEEc-CC
Confidence 0000000000 1122221 1222221111336778899876 89999999 99999998 66
Q ss_pred CChhHhHHHHHHHHh
Q 002353 686 VDPVVDEMLAKFVID 700 (932)
Q Consensus 686 ~d~~~D~~La~~vl~ 700 (932)
.....=+.||...+.
T Consensus 370 Ctf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 370 CTFEAFKTLASNYLG 384 (457)
T ss_pred CCHHHHHHHHHHhcC
Confidence 667666777766554
No 217
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.95 E-value=4.8e-05 Score=78.70 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=40.2
Q ss_pred cCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhcccc
Q 002353 598 ADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFD 677 (932)
Q Consensus 598 Ad~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFD 677 (932)
+...|++|||+++|+...+..|+..||.. +..+.+|.++|... .+.+++.||+.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~-------------~~~~~~il~~~~~~-------------~l~~~i~sr~~ 148 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEP-------------PPNTLFILITPSPE-------------KLLPTIRSRCQ 148 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECChH-------------hChHHHHhhcE
Confidence 45579999999999999899999999852 22344555555322 67889999985
No 218
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.87 E-value=5.2e-05 Score=76.91 Aligned_cols=139 Identities=18% Similarity=0.246 Sum_probs=76.9
Q ss_pred ChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEe---cCCCcccccccce----
Q 002353 506 GHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYT---TGKGASAVGLTAA---- 578 (932)
Q Consensus 506 G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~---~g~~ss~~gLta~---- 578 (932)
||+.+++.+.-++..+. ++ | .+||+|++|+||+.+|+++++..--.-.. +|...+.......
T Consensus 1 gq~~~~~~L~~~~~~~~---l~--h------a~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR---LP--H------ALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------S------EEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHcCC---cc--e------eEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 77888888777766552 11 2 47999999999999999998863211100 0100000000000
Q ss_pred ---eecCcc---cc--hh-hhc---cCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEE
Q 002353 579 ---VHKDPV---TR--EW-TLE---GGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVI 646 (932)
Q Consensus 579 ---v~kd~~---~g--~~-~le---~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sII 646 (932)
+..+.. -+ .. .+. .-.-..+..-|++||++++|+...+++|+..||+- +..+.+|
T Consensus 70 ~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep-------------p~~~~fi 136 (162)
T PF13177_consen 70 FIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP-------------PENTYFI 136 (162)
T ss_dssp EEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST-------------TTTEEEE
T ss_pred eEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC-------------CCCEEEE
Confidence 000000 00 00 000 00001134569999999999999999999999953 2344455
Q ss_pred eeeCCCCCccCCCCCcccccCCChhhhccccEEEE
Q 002353 647 AAANPVGGRYDSSKTFSENVELTDPIISRFDVLCV 681 (932)
Q Consensus 647 AAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~ 681 (932)
-.|+... .|.+++.||+-.+.+
T Consensus 137 L~t~~~~-------------~il~TI~SRc~~i~~ 158 (162)
T PF13177_consen 137 LITNNPS-------------KILPTIRSRCQVIRF 158 (162)
T ss_dssp EEES-GG-------------GS-HHHHTTSEEEEE
T ss_pred EEECChH-------------HChHHHHhhceEEec
Confidence 5554333 789999999976654
No 219
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.85 E-value=4.9e-05 Score=86.85 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=38.9
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhC
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~ 559 (932)
..|+||+.+++.+.-++..|. ++ | -+||+||+|+||+++|.++++.+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r---l~--H------A~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR---LH--H------AWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC---CC--c------eEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999998888762 11 2 49999999999999999999864
No 220
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00023 Score=84.32 Aligned_cols=136 Identities=20% Similarity=0.286 Sum_probs=79.8
Q ss_pred ccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccc----cccceeecCcccchhhhccCceeccCCCeeeecc
Q 002353 532 LRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAV----GLTAAVHKDPVTREWTLEGGALVLADRGICLIDE 607 (932)
Q Consensus 532 ~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~----gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE 607 (932)
++-.-++|++||||||||.+++++++...--++.. .+.... |-+-+..+.. + .-+...+-..+|||||
T Consensus 215 ~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i-~~peli~k~~gEte~~LR~~------f-~~a~k~~~psii~IdE 286 (693)
T KOG0730|consen 215 IKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLI-NGPELISKFPGETESNLRKA------F-AEALKFQVPSIIFIDE 286 (693)
T ss_pred CCCCCCccccCCCCCChHHHHHHHHHHhCceeEec-ccHHHHHhcccchHHHHHHH------H-HHHhccCCCeeEeHHh
Confidence 34445899999999999999999999875333321 111111 1111100100 0 0111112257999999
Q ss_pred ccccCcc--------h--hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc-cc
Q 002353 608 FDKMNDQ--------D--RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS-RF 676 (932)
Q Consensus 608 ~dkm~~~--------~--~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs-RF 676 (932)
++.+-+. . -..|+..|+.-. -..++.||||+|.+. .|++++-+ ||
T Consensus 287 ld~l~p~r~~~~~~e~Rv~sqlltL~dg~~-----------~~~~vivl~atnrp~-------------sld~alRRgRf 342 (693)
T KOG0730|consen 287 LDALCPKREGADDVESRVVSQLLTLLDGLK-----------PDAKVIVLAATNRPD-------------SLDPALRRGRF 342 (693)
T ss_pred HhhhCCcccccchHHHHHHHHHHHHHhhCc-----------CcCcEEEEEecCCcc-------------ccChhhhcCCC
Confidence 9998762 1 234555554211 124567899999876 67888876 99
Q ss_pred cEEEEecCCCChhHhHHHHHHHHh
Q 002353 677 DVLCVVKDVVDPVVDEMLAKFVID 700 (932)
Q Consensus 677 Dli~~l~D~~d~~~D~~La~~vl~ 700 (932)
|--..+ -.|+...-..+.+.+.+
T Consensus 343 d~ev~I-giP~~~~RldIl~~l~k 365 (693)
T KOG0730|consen 343 DREVEI-GIPGSDGRLDILRVLTK 365 (693)
T ss_pred cceeee-cCCCchhHHHHHHHHHH
Confidence 987766 45555555555554443
No 221
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.3e-05 Score=91.99 Aligned_cols=132 Identities=23% Similarity=0.300 Sum_probs=72.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc--EEecCCC--cccccccceeecCc---ccchhhhccCceeccCCCeeeecccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA--VYTTGKG--ASAVGLTAAVHKDP---VTREWTLEGGALVLADRGICLIDEFD 609 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~--v~~~g~~--ss~~gLta~v~kd~---~~g~~~le~Gal~lAd~GIl~IDE~d 609 (932)
.+||+||||||||.+||.+-+.+... -.+.|-. .-.+|-+-...++- ...+|.-.++.-- =.|+++||||
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~Sg---LHIIIFDEiD 334 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSG---LHIIIFDEID 334 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCC---ceEEEehhhH
Confidence 59999999999999999999986432 1111110 00111111111110 1124443332211 1489999999
Q ss_pred ccCcch-----hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEEEEe
Q 002353 610 KMNDQD-----RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLCVV 682 (932)
Q Consensus 610 km~~~~-----~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~~l 682 (932)
.+-.+. -+..|.-.-.|- ++|-..+..|+ ++.||+-||+.. -++++||+ ||.+..-+
T Consensus 335 AICKqRGS~~g~TGVhD~VVNQL--LsKmDGVeqLN-NILVIGMTNR~D-------------lIDEALLRPGRlEVqmEI 398 (744)
T KOG0741|consen 335 AICKQRGSMAGSTGVHDTVVNQL--LSKMDGVEQLN-NILVIGMTNRKD-------------LIDEALLRPGRLEVQMEI 398 (744)
T ss_pred HHHHhcCCCCCCCCccHHHHHHH--HHhcccHHhhh-cEEEEeccCchh-------------hHHHHhcCCCceEEEEEE
Confidence 764331 112222221121 22333333443 578999999865 68999998 89888776
Q ss_pred cCCCCh
Q 002353 683 KDVVDP 688 (932)
Q Consensus 683 ~D~~d~ 688 (932)
..||+
T Consensus 399 -sLPDE 403 (744)
T KOG0741|consen 399 -SLPDE 403 (744)
T ss_pred -eCCCc
Confidence 34443
No 222
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.71 E-value=0.00056 Score=73.25 Aligned_cols=149 Identities=19% Similarity=0.206 Sum_probs=77.0
Q ss_pred ccChHHHHHHHhh---hhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceee
Q 002353 504 IYGHEDIKTALAL---SMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVH 580 (932)
Q Consensus 504 I~G~~~vK~aill---aL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~ 580 (932)
++|.+.-|+.|+- +.+.|.+. . ||||+|+.|||||.++|++....... +.-.+. +.
T Consensus 29 L~Gie~Qk~~l~~Nt~~Fl~G~pa-----n------nvLL~G~rGtGKSSlVkall~~y~~~------GLRlIe----v~ 87 (249)
T PF05673_consen 29 LIGIERQKEALIENTEQFLQGLPA-----N------NVLLWGARGTGKSSLVKALLNEYADQ------GLRLIE----VS 87 (249)
T ss_pred hcCHHHHHHHHHHHHHHHHcCCCC-----c------ceEEecCCCCCHHHHHHHHHHHHhhc------CceEEE----EC
Confidence 4677777776663 33444221 2 99999999999999999988753221 100110 11
Q ss_pred cCcccchhhhccCceeccCCCeeeeccccccCcc-hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCC---Ccc
Q 002353 581 KDPVTREWTLEGGALVLADRGICLIDEFDKMNDQ-DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVG---GRY 656 (932)
Q Consensus 581 kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~-~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~---Gry 656 (932)
++....-..+-.-.-....+-|+|+|++.-=..+ .-..|..+|| | .....|.++.|.||+|.-. ..+
T Consensus 88 k~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~Le-G--------gle~~P~NvliyATSNRRHLv~E~~ 158 (249)
T PF05673_consen 88 KEDLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLE-G--------GLEARPDNVLIYATSNRRHLVPESF 158 (249)
T ss_pred HHHhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhc-C--------ccccCCCcEEEEEecchhhccchhh
Confidence 1100000000000000123458999997632222 2344555555 2 2345588899999999842 222
Q ss_pred CCCCC-----c--ccccCCChhhhccccEEEEe
Q 002353 657 DSSKT-----F--SENVELTDPIISRFDVLCVV 682 (932)
Q Consensus 657 ~~~~~-----~--~~ni~L~~~LLsRFDli~~l 682 (932)
..... + .+.++=.-+|-+||-|.+.+
T Consensus 159 ~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F 191 (249)
T PF05673_consen 159 SDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSF 191 (249)
T ss_pred hhccCCCccccCcchHHHHHHhHHHhCCcEEEe
Confidence 11111 1 11122223566799988887
No 223
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00012 Score=91.31 Aligned_cols=234 Identities=19% Similarity=0.265 Sum_probs=124.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCc-ccchhhhccC-----ceecc---CCCeeeecc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDP-VTREWTLEGG-----ALVLA---DRGICLIDE 607 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~-~~g~~~le~G-----al~lA---d~GIl~IDE 607 (932)
.||+.|+||||||.+|++++..+.+.-- ..+ +...+++ --+.|..++- .+..| .-.|+|.||
T Consensus 301 gvL~~GppGTGkTl~araLa~~~s~~~~----kis-----ffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffde 371 (1080)
T KOG0732|consen 301 GVLFHGPPGTGKTLMARALAAACSRGNR----KIS-----FFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDE 371 (1080)
T ss_pred ceeecCCCCCchhHHHHhhhhhhccccc----ccc-----hhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccc
Confidence 5999999999999999999988765311 011 1111111 0122333321 11122 236999999
Q ss_pred ccccCcch-----------hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--
Q 002353 608 FDKMNDQD-----------RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS-- 674 (932)
Q Consensus 608 ~dkm~~~~-----------~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs-- 674 (932)
|+-+.+-. ...|+-.|. |. .-...+.||+|||... .++++|.+
T Consensus 372 IdGlapvrSskqEqih~SIvSTLLaLmd---------Gl--dsRgqVvvigATnRpd-------------a~dpaLRRPg 427 (1080)
T KOG0732|consen 372 IDGLAPVRSSKQEQIHASIVSTLLALMD---------GL--DSRGQVVVIGATNRPD-------------AIDPALRRPG 427 (1080)
T ss_pred cccccccccchHHHhhhhHHHHHHHhcc---------CC--CCCCceEEEcccCCcc-------------ccchhhcCCc
Confidence 99665432 122333332 11 1124578999999976 68888855
Q ss_pred cccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHh-hcC-
Q 002353 675 RFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAK-LNV- 752 (932)
Q Consensus 675 RFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar-~~~- 752 (932)
|||-.|.+ +-.+..-..+|+..|.++-... .. ........ ..... .....||.++.-|- .-+
T Consensus 428 rfdref~f-----~lp~~~ar~~Il~Ihtrkw~~~--i~-------~~l~~~la-~~t~g-y~gaDlkaLCTeAal~~~~ 491 (1080)
T KOG0732|consen 428 RFDREFYF-----PLPDVDARAKILDIHTRKWEPP--IS-------RELLLWLA-EETSG-YGGADLKALCTEAALIALR 491 (1080)
T ss_pred ccceeEee-----eCCchHHHHHHHHHhccCCCCC--CC-------HHHHHHHH-Hhccc-cchHHHHHHHHHHhhhhhc
Confidence 89998887 2223333457888887654321 00 00000000 00111 23344777766332 111
Q ss_pred --CCc-CC---------hhHHHHHHHHHHHHHhcccCC------CCcccC------------HHHHHHHHHHHHHHHHhh
Q 002353 753 --FPR-LH---------DPDMEKLTHVYAELRRESSHG------QGVPIA------------VRHIESMIRMSEAHARMR 802 (932)
Q Consensus 753 --~P~-Ls---------~ea~~~L~~~Y~~lR~~~~~~------~~~pit------------vR~LEslIRlAeA~Akl~ 802 (932)
.|. ++ ....-.+..++..|++..... -+.|++ +.-+..+++++...+++.
T Consensus 492 r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~ 571 (1080)
T KOG0732|consen 492 RSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIE 571 (1080)
T ss_pred cccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHH
Confidence 231 11 111245566777777653211 122333 455667778888888876
Q ss_pred CCCCcCHHHHHH--HHHHH
Q 002353 803 LRQHVTQEDVNM--AIRVL 819 (932)
Q Consensus 803 lr~~Vt~~Dv~~--AI~l~ 819 (932)
.-.+.+..+... ||.++
T Consensus 572 e~~~~~v~~~e~~~~i~li 590 (1080)
T KOG0732|consen 572 EHLKLLVRSFESNFAIRLI 590 (1080)
T ss_pred HHhHHHHHhhhcccchhhh
Confidence 666666666655 66554
No 224
>PRK08181 transposase; Validated
Probab=97.71 E-value=9.8e-06 Score=88.73 Aligned_cols=118 Identities=19% Similarity=0.286 Sum_probs=66.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc----EEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA----VYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMN 612 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~----v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~ 612 (932)
|++|+||||||||+|+.++++.+... +|.+ ...|...+......+ .+....-.+..--+++|||++..+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-----~~~L~~~l~~a~~~~--~~~~~l~~l~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-----TTDLVQKLQVARREL--QLESAIAKLDKFDLLILDDLAYVT 180 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-----HHHHHHHHHHHHhCC--cHHHHHHHHhcCCEEEEecccccc
Confidence 89999999999999999998754321 1211 111211110000000 000000012334599999999876
Q ss_pred cch--hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhcccc
Q 002353 613 DQD--RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFD 677 (932)
Q Consensus 613 ~~~--~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFD 677 (932)
... +..|+++++... . +.++|.|+|...+.|.... ....+..+++||.-
T Consensus 181 ~~~~~~~~Lf~lin~R~------------~-~~s~IiTSN~~~~~w~~~~---~D~~~a~aildRL~ 231 (269)
T PRK08181 181 KDQAETSVLFELISARY------------E-RRSILITANQPFGEWNRVF---PDPAMTLAAVDRLV 231 (269)
T ss_pred CCHHHHHHHHHHHHHHH------------h-CCCEEEEcCCCHHHHHHhc---CCccchhhHHHhhh
Confidence 643 356888887542 1 1367899998776553211 12246678888863
No 225
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.71 E-value=5.2e-05 Score=85.68 Aligned_cols=141 Identities=18% Similarity=0.245 Sum_probs=82.2
Q ss_pred cccC-hHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCc----EEecCCCcccccccc
Q 002353 503 SIYG-HEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRA----VYTTGKGASAVGLTA 577 (932)
Q Consensus 503 ~I~G-~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~----v~~~g~~ss~~gLta 577 (932)
.|.| |+.+++.+.-++-.|. ++ | ..||+||+|+||+++|+.+++...-. ...+|.-.+...+..
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~---l~--h------a~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~ 74 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR---LS--H------AYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDS 74 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC---CC--c------eEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhc
Confidence 4556 8888888777766552 11 1 45999999999999999998874211 111111100000000
Q ss_pred eeecC-----cccchhh----------hccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccc
Q 002353 578 AVHKD-----PVTREWT----------LEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQAR 642 (932)
Q Consensus 578 ~v~kd-----~~~g~~~----------le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar 642 (932)
+...| +...... +.... ..+...|++|||++.|+...+++|+..||+- +..
T Consensus 75 ~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~-~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP-------------p~~ 140 (329)
T PRK08058 75 GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSG-VESNKKVYIIEHADKMTASAANSLLKFLEEP-------------SGG 140 (329)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHhhCC-cccCceEEEeehHhhhCHHHHHHHHHHhcCC-------------CCC
Confidence 00000 0000000 00011 2345679999999999999999999999952 223
Q ss_pred eEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEE
Q 002353 643 CSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCV 681 (932)
Q Consensus 643 ~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~ 681 (932)
+.+|.+|+... .|.+++.||+-.+.+
T Consensus 141 ~~~Il~t~~~~-------------~ll~TIrSRc~~i~~ 166 (329)
T PRK08058 141 TTAILLTENKH-------------QILPTILSRCQVVEF 166 (329)
T ss_pred ceEEEEeCChH-------------hCcHHHHhhceeeeC
Confidence 34444444222 688899999987665
No 226
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.70 E-value=0.00036 Score=75.28 Aligned_cols=145 Identities=16% Similarity=0.227 Sum_probs=100.1
Q ss_pred CeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEE
Q 002353 601 GICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLC 680 (932)
Q Consensus 601 GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~ 680 (932)
||+||||+..++-+-.+.||.++|.-- -..||.|+|.-...-........-..+++.||+|.-++-
T Consensus 298 GVLFIDEVhMLDiEcFTyL~kalES~i--------------aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iir 363 (456)
T KOG1942|consen 298 GVLFIDEVHMLDIECFTYLHKALESPI--------------APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIR 363 (456)
T ss_pred cceEeeehhhhhhHHHHHHHHHhcCCC--------------CceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEe
Confidence 899999999999999999999999532 124677777632111111111122378889999876555
Q ss_pred EecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhH
Q 002353 681 VVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPD 760 (932)
Q Consensus 681 ~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea 760 (932)
.++ .+.+.+++.|..--+.-.-.++++|
T Consensus 364 t~~----------------------------------------------------y~~~e~r~Ii~~Ra~~E~l~~~e~a 391 (456)
T KOG1942|consen 364 TLP----------------------------------------------------YDEEEIRQIIKIRAQVEGLQVEEEA 391 (456)
T ss_pred ecc----------------------------------------------------CCHHHHHHHHHHHHhhhcceecHHH
Confidence 531 2333445555422111233677888
Q ss_pred HHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhh
Q 002353 761 MEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSF 823 (932)
Q Consensus 761 ~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~ 823 (932)
.+.|... +...++|.--.|+--+-..|+++.++.|..+||.++-.||..+-
T Consensus 392 ~~~l~~~------------gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~Dak 442 (456)
T KOG1942|consen 392 LDLLAEI------------GTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELFLDAK 442 (456)
T ss_pred HHHHHhh------------ccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHHHhch
Confidence 8887765 44567888888888888899999999999999999999998873
No 227
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.00011 Score=82.37 Aligned_cols=139 Identities=19% Similarity=0.290 Sum_probs=82.8
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeec
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHK 581 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~k 581 (932)
..|.||+.++..+.-++-.|.- .| -.||+||+|+||+++|+.+++.+.-.. ..+.......+... ..
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~-----~h------a~Lf~G~~G~Gk~~la~~~a~~l~c~~-~~~~h~D~~~~~~~-~~ 70 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRF-----SH------AHIIVGEDGIGKSLLAKEIALKILGKS-QQREYVDIIEFKPI-NK 70 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCC-----Cc------eEEeECCCCCCHHHHHHHHHHHHcCCC-CCCCCCCeEEeccc-cC
Confidence 3578999999998888866521 12 458999999999999999998642110 00000000000000 00
Q ss_pred Cccc-ch-hh-hc---cCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccce-EEEeeeCCCCC
Q 002353 582 DPVT-RE-WT-LE---GGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARC-SVIAAANPVGG 654 (932)
Q Consensus 582 d~~~-g~-~~-le---~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~-sIIAAaNp~~G 654 (932)
...+ .. .. .+ ..+ ..+..-|++||+.++|+...+++|+..||.= +..+ .|+.|.|+.
T Consensus 71 ~~i~v~~ir~~~~~~~~~p-~~~~~kv~iI~~ad~m~~~a~naLLK~LEep-------------p~~t~~il~~~~~~-- 134 (313)
T PRK05564 71 KSIGVDDIRNIIEEVNKKP-YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP-------------PKGVFIILLCENLE-- 134 (313)
T ss_pred CCCCHHHHHHHHHHHhcCc-ccCCceEEEEechhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEeCChH--
Confidence 0000 00 00 00 011 2345679999999999999999999999951 2223 344554542
Q ss_pred ccCCCCCcccccCCChhhhccccEEEE
Q 002353 655 RYDSSKTFSENVELTDPIISRFDVLCV 681 (932)
Q Consensus 655 ry~~~~~~~~ni~L~~~LLsRFDli~~ 681 (932)
.+.+++.||+-.+.+
T Consensus 135 ------------~ll~TI~SRc~~~~~ 149 (313)
T PRK05564 135 ------------QILDTIKSRCQIYKL 149 (313)
T ss_pred ------------hCcHHHHhhceeeeC
Confidence 688899999964443
No 228
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.65 E-value=0.00023 Score=79.93 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=41.2
Q ss_pred CeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEE
Q 002353 601 GICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLC 680 (932)
Q Consensus 601 GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~ 680 (932)
|||||||.+.|+-+-.+.|..+||.--- ..||-|||.--.+- .......-..+|..||+|+=++-
T Consensus 280 GVLFIDEvHmLDiEcFsfLnralEs~~s--------------PiiIlATNRg~~~i-rGt~~~sphGiP~DlLDRllII~ 344 (398)
T PF06068_consen 280 GVLFIDEVHMLDIECFSFLNRALESELS--------------PIIILATNRGITKI-RGTDIISPHGIPLDLLDRLLIIR 344 (398)
T ss_dssp -EEEEESGGGSBHHHHHHHHHHHTSTT----------------EEEEEES-SEEE--BTTS-EEETT--HHHHTTEEEEE
T ss_pred ceEEecchhhccHHHHHHHHHHhcCCCC--------------cEEEEecCceeeec-cCccCcCCCCCCcchHhhcEEEE
Confidence 8999999999999999999999995431 24677888632111 11112222478899999985444
Q ss_pred E
Q 002353 681 V 681 (932)
Q Consensus 681 ~ 681 (932)
.
T Consensus 345 t 345 (398)
T PF06068_consen 345 T 345 (398)
T ss_dssp E
T ss_pred C
Confidence 4
No 229
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.0013 Score=75.52 Aligned_cols=192 Identities=19% Similarity=0.275 Sum_probs=110.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccce--------eecCcccchhhhccCceeccCCCeeeeccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAA--------VHKDPVTREWTLEGGALVLADRGICLIDEF 608 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~--------v~kd~~~g~~~le~Gal~lAd~GIl~IDE~ 608 (932)
+++|+|++|.|||+|++++...+-.. +..+-...+++. ..++.....| + ... .-.++|||++
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~~----~~~a~v~y~~se~f~~~~v~a~~~~~~~~F--k--~~y--~~dlllIDDi 184 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALAN----GPNARVVYLTSEDFTNDFVKALRDNEMEKF--K--EKY--SLDLLLIDDI 184 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHhh----CCCceEEeccHHHHHHHHHHHHHhhhHHHH--H--Hhh--ccCeeeechH
Confidence 89999999999999999998764221 011111111110 0011000000 0 001 2358999999
Q ss_pred cccCcch--hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCC
Q 002353 609 DKMNDQD--RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVV 686 (932)
Q Consensus 609 dkm~~~~--~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~ 686 (932)
+-+.... +..++..... +.-.| + .||.|+...+.. -..+.+.|.|||.--.++ +..
T Consensus 185 q~l~gk~~~qeefFh~FN~----l~~~~-------k-qIvltsdr~P~~---------l~~~~~rL~SR~~~Gl~~-~I~ 242 (408)
T COG0593 185 QFLAGKERTQEEFFHTFNA----LLENG-------K-QIVLTSDRPPKE---------LNGLEDRLRSRLEWGLVV-EIE 242 (408)
T ss_pred hHhcCChhHHHHHHHHHHH----HHhcC-------C-EEEEEcCCCchh---------hccccHHHHHHHhceeEE-eeC
Confidence 9987764 3344333321 00011 1 556666554422 225678999999876554 111
Q ss_pred ChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHH
Q 002353 687 DPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTH 766 (932)
Q Consensus 687 d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~ 766 (932)
.+....+ ...|++ -|. .....+++++...|..
T Consensus 243 ~Pd~e~r--------------------------------------------~aiL~k---ka~-~~~~~i~~ev~~~la~ 274 (408)
T COG0593 243 PPDDETR--------------------------------------------LAILRK---KAE-DRGIEIPDEVLEFLAK 274 (408)
T ss_pred CCCHHHH--------------------------------------------HHHHHH---HHH-hcCCCCCHHHHHHHHH
Confidence 1110000 112222 122 1345788888888887
Q ss_pred HHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhh
Q 002353 767 VYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDS 822 (932)
Q Consensus 767 ~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S 822 (932)
. +.-++|+|+..+...-++|....+ .+|..-|.++++-+..+
T Consensus 275 ~-------------~~~nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 275 R-------------LDRNVRELEGALNRLDAFALFTKR-AITIDLVKEILKDLLRA 316 (408)
T ss_pred H-------------hhccHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhcc
Confidence 4 446899999999888888888877 89999999888877665
No 230
>PRK12377 putative replication protein; Provisional
Probab=97.63 E-value=1.5e-05 Score=86.21 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=64.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccc--cCcc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDK--MNDQ 614 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dk--m~~~ 614 (932)
+++|+|+||||||+||.++++.+...-+.. ...+...+...+......+. ....-.-.+..--+|+||||+. +++.
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v-~~i~~~~l~~~l~~~~~~~~-~~~~~l~~l~~~dLLiIDDlg~~~~s~~ 180 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSV-IVVTVPDVMSRLHESYDNGQ-SGEKFLQELCKVDLLVLDEIGIQRETKN 180 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCe-EEEEHHHHHHHHHHHHhccc-hHHHHHHHhcCCCEEEEcCCCCCCCCHH
Confidence 899999999999999999998764321000 00011111111100000000 0000000123556999999954 4555
Q ss_pred hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccc
Q 002353 615 DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRF 676 (932)
Q Consensus 615 ~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRF 676 (932)
.+..|+++++... ..+.++|.+||.....+.. .+...++||.
T Consensus 181 ~~~~l~~ii~~R~------------~~~~ptiitSNl~~~~l~~--------~~~~ri~dRl 222 (248)
T PRK12377 181 EQVVLNQIIDRRT------------ASMRSVGMLTNLNHEAMST--------LLGERVMDRM 222 (248)
T ss_pred HHHHHHHHHHHHH------------hcCCCEEEEcCCCHHHHHH--------HhhHHHHHHH
Confidence 6678888888653 2234678899976533311 3456677776
No 231
>PRK06526 transposase; Provisional
Probab=97.59 E-value=2.2e-05 Score=85.35 Aligned_cols=104 Identities=21% Similarity=0.232 Sum_probs=56.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCc--c
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMND--Q 614 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~--~ 614 (932)
|++|+||||||||+|+.+++..+...-+.. ...+...+..........+. +......+..-.+++|||++..+. .
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v-~f~t~~~l~~~l~~~~~~~~--~~~~l~~l~~~dlLIIDD~g~~~~~~~ 176 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRV-LFATAAQWVARLAAAHHAGR--LQAELVKLGRYPLLIVDEVGYIPFEPE 176 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCch-hhhhHHHHHHHHHHHHhcCc--HHHHHHHhccCCEEEEcccccCCCCHH
Confidence 999999999999999999977543211110 00111111110000000000 000001123346899999998763 3
Q ss_pred hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCcc
Q 002353 615 DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRY 656 (932)
Q Consensus 615 ~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry 656 (932)
.+..|++++.... .+.++|.++|...+.|
T Consensus 177 ~~~~L~~li~~r~-------------~~~s~IitSn~~~~~w 205 (254)
T PRK06526 177 AANLFFQLVSSRY-------------ERASLIVTSNKPFGRW 205 (254)
T ss_pred HHHHHHHHHHHHH-------------hcCCEEEEcCCCHHHH
Confidence 4556888876432 0125788999877655
No 232
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.56 E-value=1.1e-05 Score=82.97 Aligned_cols=118 Identities=16% Similarity=0.266 Sum_probs=54.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC----cEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR----AVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMN 612 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r----~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~ 612 (932)
|++|+|+||||||+||.++++.+-. ..|. +...|...+......+.+.-. .-.+.+--+|+||||...+
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~-----~~~~L~~~l~~~~~~~~~~~~--~~~l~~~dlLilDDlG~~~ 121 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI-----TASDLLDELKQSRSDGSYEEL--LKRLKRVDLLILDDLGYEP 121 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE-----EHHHHHHHHHCCHCCTTHCHH--HHHHHTSSCEEEETCTSS-
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe-----ecCceeccccccccccchhhh--cCccccccEecccccceee
Confidence 9999999999999999999875322 1111 111222211111111110000 0113345699999998765
Q ss_pred c--chhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhcccc
Q 002353 613 D--QDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFD 677 (932)
Q Consensus 613 ~--~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFD 677 (932)
. .....|+++++... . +.++|.|||.....+.... .+-.+..++++|.-
T Consensus 122 ~~~~~~~~l~~ii~~R~------------~-~~~tIiTSN~~~~~l~~~~---~d~~~a~aildRl~ 172 (178)
T PF01695_consen 122 LSEWEAELLFEIIDERY------------E-RKPTIITSNLSPSELEEVL---GDRALAEAILDRLL 172 (178)
T ss_dssp --HHHHHCTHHHHHHHH------------H-T-EEEEEESS-HHHHHT-------------------
T ss_pred ecccccccchhhhhHhh------------c-ccCeEeeCCCchhhHhhcc---cccccccccccccc
Confidence 3 34566777777542 1 1256779998764442211 12256777887753
No 233
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.00034 Score=78.54 Aligned_cols=140 Identities=14% Similarity=0.193 Sum_probs=84.6
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcc-------ccc
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGAS-------AVG 574 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss-------~~g 574 (932)
..|+||+.++..+.-++-.|. + .| ..||+||+|+||+.+|.++++.+.-.- .+|.-.+ -..
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r---l--~h------a~Lf~G~~G~Gk~~~A~~~a~~llc~~-~c~~c~~~~~~~~~hPD 71 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR---I--AP------AYLFAGPEGVGRKLAALCFIEGLLSQG-SPSKNIRRRLEEGNHPD 71 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC---C--Cc------eEEEECCCCCCHHHHHHHHHHHHcCCC-CCCCcHhcccccCCCCC
Confidence 468999999999988887662 1 13 899999999999999999988642110 1110000 000
Q ss_pred ccc---e--e---------------ecCc--ccc--h-hhhc--cC-ceeccCCCeeeeccccccCcchhhhHHHHHhhc
Q 002353 575 LTA---A--V---------------HKDP--VTR--E-WTLE--GG-ALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQ 626 (932)
Q Consensus 575 Lta---~--v---------------~kd~--~~g--~-~~le--~G-al~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq 626 (932)
+.. . . .+.. .-+ . ..+. .. .-..+...|++||+.++|+....++|+..||+=
T Consensus 72 l~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEP 151 (314)
T PRK07399 72 LLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEP 151 (314)
T ss_pred EEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCC
Confidence 000 0 0 0000 000 0 0000 00 001245679999999999999999999999952
Q ss_pred eeeeeccceeEeeccce-EEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEE
Q 002353 627 SISISKAGIVTSLQARC-SVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCV 681 (932)
Q Consensus 627 ~isi~kagi~~~l~ar~-sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~ 681 (932)
+ ++ .|+.|.++ . .|.+++.||+-.+-+
T Consensus 152 -------------p-~~~fILi~~~~-~-------------~Ll~TI~SRcq~i~f 179 (314)
T PRK07399 152 -------------G-NGTLILIAPSP-E-------------SLLPTIVSRCQIIPF 179 (314)
T ss_pred -------------C-CCeEEEEECCh-H-------------hCcHHHHhhceEEec
Confidence 1 22 34444454 2 788999999976655
No 234
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.44 E-value=0.0017 Score=78.94 Aligned_cols=52 Identities=17% Similarity=0.110 Sum_probs=33.3
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
.+.||+.....+.-.+...... ...+. -++|+||||+|||++++.+++....
T Consensus 85 el~~~~~ki~~l~~~l~~~~~~-~~~~~------illL~GP~GsGKTTl~~~la~~l~~ 136 (637)
T TIGR00602 85 ELAVHKKKIEEVETWLKAQVLE-NAPKR------ILLITGPSGCGKSTTIKILSKELGI 136 (637)
T ss_pred HhcCcHHHHHHHHHHHHhcccc-cCCCc------EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4567776655554444332111 01111 3899999999999999999987654
No 235
>PRK08116 hypothetical protein; Validated
Probab=97.42 E-value=4.6e-05 Score=83.60 Aligned_cols=100 Identities=13% Similarity=0.224 Sum_probs=55.7
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCC---c-EEecCCCcccccccceeecCc-ccchhhhccCce-eccCCCeeeecccc
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQR---A-VYTTGKGASAVGLTAAVHKDP-VTREWTLEGGAL-VLADRGICLIDEFD 609 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r---~-v~~~g~~ss~~gLta~v~kd~-~~g~~~le~Gal-~lAd~GIl~IDE~d 609 (932)
.+++|+|+||||||+||.++++.+.. + +|.+ ...+...+...- ..+... +...+ .+.+..+|+||+++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----~~~ll~~i~~~~~~~~~~~-~~~~~~~l~~~dlLviDDlg 188 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----FPQLLNRIKSTYKSSGKED-ENEIIRSLVNADLLILDDLG 188 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----HHHHHHHHHHHHhcccccc-HHHHHHHhcCCCEEEEeccc
Confidence 37999999999999999999887432 1 2221 111111110000 000000 00011 13345699999995
Q ss_pred --ccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCC
Q 002353 610 --KMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVG 653 (932)
Q Consensus 610 --km~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~ 653 (932)
..++..+..|+++++... .....+|.|||...
T Consensus 189 ~e~~t~~~~~~l~~iin~r~------------~~~~~~IiTsN~~~ 222 (268)
T PRK08116 189 AERDTEWAREKVYNIIDSRY------------RKGLPTIVTTNLSL 222 (268)
T ss_pred CCCCCHHHHHHHHHHHHHHH------------HCCCCEEEECCCCH
Confidence 455556677888887542 12235889999754
No 236
>PRK09183 transposase/IS protein; Provisional
Probab=97.38 E-value=3.2e-05 Score=84.39 Aligned_cols=117 Identities=22% Similarity=0.375 Sum_probs=62.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC---cE-EecCCCcccccccceeecCcccchh--hhccCceeccCCCeeeeccccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR---AV-YTTGKGASAVGLTAAVHKDPVTREW--TLEGGALVLADRGICLIDEFDK 610 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r---~v-~~~g~~ss~~gLta~v~kd~~~g~~--~le~Gal~lAd~GIl~IDE~dk 610 (932)
|++|+||||||||+|+.+++..+.. .+ |.+ ...+...+......+.+ .+.. . ...-.+++|||++.
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~-----~~~l~~~l~~a~~~~~~~~~~~~-~--~~~~dlLiiDdlg~ 175 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT-----AADLLLQLSTAQRQGRYKTTLQR-G--VMAPRLLIIDEIGY 175 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-----HHHHHHHHHHHHHCCcHHHHHHH-H--hcCCCEEEEccccc
Confidence 8999999999999999999765322 11 111 11111010000000100 0100 0 12336899999998
Q ss_pred cCcc--hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccc
Q 002353 611 MNDQ--DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRF 676 (932)
Q Consensus 611 m~~~--~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRF 676 (932)
++.. ....|++++.... . +.++|.|+|...+.|... |...-.+..++++|.
T Consensus 176 ~~~~~~~~~~lf~li~~r~----~---------~~s~iiTsn~~~~~w~~~--~~~d~~~~~ai~dRl 228 (259)
T PRK09183 176 LPFSQEEANLFFQVIAKRY----E---------KGSMILTSNLPFGQWDQT--FAGDAALTSAMLDRL 228 (259)
T ss_pred CCCChHHHHHHHHHHHHHH----h---------cCcEEEecCCCHHHHHHH--hcCchhHHHHHHHHH
Confidence 6544 3346788876531 0 125788999877665321 111224456677765
No 237
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.37 E-value=4.6e-05 Score=82.96 Aligned_cols=121 Identities=20% Similarity=0.228 Sum_probs=65.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc-EEecCCCcccccccceeecCcccchhhhccCcee-ccCCCeeeeccccccCcc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA-VYTTGKGASAVGLTAAVHKDPVTREWTLEGGALV-LADRGICLIDEFDKMNDQ 614 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~-v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~-lAd~GIl~IDE~dkm~~~ 614 (932)
|++|+|+||||||+||-++++.+.+. +-+. -.+...+...+...-..| ..+.-..- +..--+|+|||+...+..
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~--f~~~~el~~~Lk~~~~~~--~~~~~l~~~l~~~dlLIiDDlG~~~~~ 182 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVL--FITAPDLLSKLKAAFDEG--RLEEKLLRELKKVDLLIIDDIGYEPFS 182 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEE--EEEHHHHHHHHHHHHhcC--chHHHHHHHhhcCCEEEEecccCccCC
Confidence 99999999999999999998865321 1000 011111111111000000 00100111 334469999999996655
Q ss_pred --hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhcccc
Q 002353 615 --DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFD 677 (932)
Q Consensus 615 --~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFD 677 (932)
.++.+++++.+.. ..+.. +.++|...+.+..-.... .+.+++++|.-
T Consensus 183 ~~~~~~~~q~I~~r~------------~~~~~-~~tsN~~~~~~~~~~~~~---~~~e~~~dRi~ 231 (254)
T COG1484 183 QEEADLLFQLISRRY------------ESRSL-IITSNLSFGEWDELFGDD---ALTEALLDRIL 231 (254)
T ss_pred HHHHHHHHHHHHHHH------------hhccc-eeecCCChHHHHhhccCc---hhHHHHHHHHH
Confidence 4677778776543 22233 789998876653321111 14566666643
No 238
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.35 E-value=0.0093 Score=71.51 Aligned_cols=237 Identities=19% Similarity=0.167 Sum_probs=134.8
Q ss_pred HHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCC---------CcEEecC
Q 002353 497 IKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQ---------RAVYTTG 567 (932)
Q Consensus 497 ~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~---------r~v~~~g 567 (932)
...+-.++.+.+..+.-|-..+-+--.. ...|. -+.+.|-||||||+....|.+.+. .-.|.--
T Consensus 391 ls~vp~sLpcRe~E~~~I~~f~~~~i~~-~~~g~------~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveI 463 (767)
T KOG1514|consen 391 LSAVPESLPCRENEFSEIEDFLRSFISD-QGLGS------CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEI 463 (767)
T ss_pred HhhccccccchhHHHHHHHHHHHhhcCC-CCCce------eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEE
Confidence 3345555677777777776655543221 11111 689999999999999998877432 1122211
Q ss_pred CCccccc-------ccceeecCcccchhhhccCce------eccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccc
Q 002353 568 KGASAVG-------LTAAVHKDPVTREWTLEGGAL------VLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAG 634 (932)
Q Consensus 568 ~~ss~~g-------Lta~v~kd~~~g~~~le~Gal------~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kag 634 (932)
.+.-..+ +...+.....++...++.-.. ......|++|||.|.|-..-|..|+.+.+==
T Consensus 464 Ngm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWp-------- 535 (767)
T KOG1514|consen 464 NGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWP-------- 535 (767)
T ss_pred cceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCC--------
Confidence 1111100 000111111111111111000 1123369999999999887777777776511
Q ss_pred eeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc-----cccEEEEecCCCChhHhHHHHHHHHhhccCCCCCC
Q 002353 635 IVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS-----RFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKG 709 (932)
Q Consensus 635 i~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs-----RFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~ 709 (932)
+.-+++..|||-+|.. +|++.+|. |.++.-+..
T Consensus 536 --t~~~sKLvvi~IaNTm--------------dlPEr~l~nrvsSRlg~tRi~F-------------------------- 573 (767)
T KOG1514|consen 536 --TLKNSKLVVIAIANTM--------------DLPERLLMNRVSSRLGLTRICF-------------------------- 573 (767)
T ss_pred --cCCCCceEEEEecccc--------------cCHHHHhccchhhhccceeeec--------------------------
Confidence 1225778899999974 45555542 333332221
Q ss_pred CCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHH
Q 002353 710 VNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIE 789 (932)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LE 789 (932)
.+.+...|+..|.-.-.. .-.+...|.+.+++.-+ .+.+.+|.-.
T Consensus 574 ------------------------~pYth~qLq~Ii~~RL~~-~~~f~~~aielvarkVA----------avSGDaRral 618 (767)
T KOG1514|consen 574 ------------------------QPYTHEQLQEIISARLKG-LDAFENKAIELVARKVA----------AVSGDARRAL 618 (767)
T ss_pred ------------------------CCCCHHHHHHHHHHhhcc-hhhcchhHHHHHHHHHH----------hccccHHHHH
Confidence 123444555555422111 12345566666665322 5567899999
Q ss_pred HHHHHHHHHHHhhCC-------CCcCHHHHHHHHHHHHhhhhh
Q 002353 790 SMIRMSEAHARMRLR-------QHVTQEDVNMAIRVLLDSFIS 825 (932)
Q Consensus 790 slIRlAeA~Akl~lr-------~~Vt~~Dv~~AI~l~~~S~~~ 825 (932)
.++|.|.-.|.-+.. ..|+..||..|+.-|..+...
T Consensus 619 dic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~~~ 661 (767)
T KOG1514|consen 619 DICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASPYI 661 (767)
T ss_pred HHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhhHH
Confidence 999988888876666 789999999999999888654
No 239
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.34 E-value=0.00024 Score=66.88 Aligned_cols=99 Identities=20% Similarity=0.323 Sum_probs=55.9
Q ss_pred EEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcc---
Q 002353 538 VLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQ--- 614 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~--- 614 (932)
|.|.|+||+|||.+++.+++.+........ ... ...+.+...-|.-- ....++++|||......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~----~~~---vy~~~~~~~~w~gY------~~q~vvi~DD~~~~~~~~~~ 67 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPT----KDS---VYTRNPGDKFWDGY------QGQPVVIIDDFGQDNDGYNY 67 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCC----CCc---EEeCCCccchhhcc------CCCcEEEEeecCccccccch
Confidence 579999999999999998876543321000 000 01112222222111 13468999999988865
Q ss_pred -hhhhHHHHHhhceeeeecccee---EeeccceEEEeeeC
Q 002353 615 -DRVSIHEAMEQQSISISKAGIV---TSLQARCSVIAAAN 650 (932)
Q Consensus 615 -~~~~L~eamEqq~isi~kagi~---~~l~ar~sIIAAaN 650 (932)
.-..|..++....+....|+.. ..+++ -.||++||
T Consensus 68 ~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s-~~vi~tsN 106 (107)
T PF00910_consen 68 SDESELIRLISSNPFQPNMADLEDKGTPFNS-KLVIITSN 106 (107)
T ss_pred HHHHHHHHHHhcCCcccccccHhhCCCccCC-CEEEEcCC
Confidence 4455666766666555555433 22222 35667776
No 240
>KOG2545 consensus Conserved membrane protein [Function unknown]
Probab=97.33 E-value=0.02 Score=64.67 Aligned_cols=322 Identities=15% Similarity=0.150 Sum_probs=182.5
Q ss_pred EEEeccccccCCCCCeEEEEEEEeecccCcCCcCCCcceEEE-EEEEeccccccccccccccCHHHHHHHHHHhcChhhH
Q 002353 415 VILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFAT-VVEANHITKKHDLFSAYKLTQEDKEEIEKLAKDPRIG 493 (932)
Q Consensus 415 V~L~~dLvd~~~pGd~V~ItGI~~~~~~~~~~~k~~~~vf~~-~i~an~I~~~~~~~~~~~lt~~d~~~i~~l~~~~~i~ 493 (932)
|.+.++.=-+++..|.|.+.|||.... .+..-.+-+.-.+ -.+|-|++.... ...+.++-++ .+++ +
T Consensus 203 VKvYe~~et~~qvnd~vdf~Gilsvdp--~la~ld~ld~~~~ae~qa~hvq~lqh---~nPllp~ilr--~el~--~--- 270 (543)
T KOG2545|consen 203 VKVYEGMETKVQVNDAVDFIGILSVDP--ELASLDGLDCLHMAEFQAYHVQALQH---PNPLLPEILR--KELR--P--- 270 (543)
T ss_pred EEEecCcccceehhhhhhhheeeecCh--hhhcCCCcccccHHHHHHHHHhccCC---CCccchHHHH--HHhh--H---
Confidence 667777767799999999999997532 1101011110000 112222222110 1112222221 1222 2
Q ss_pred HHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCc--hHHHHHHHHHHhCCCcEEecCCCcc
Q 002353 494 ERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGT--AKSQFLKYVEKTGQRAVYTTGKGAS 571 (932)
Q Consensus 494 ~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGT--GKS~Lak~va~~~~r~v~~~g~~ss 571 (932)
.|...+-.-+.|...+-.-+++.|++.+-... ++ -.-|...+=|+|=|-- --|+|-+.+..+.|++++..-.-..
T Consensus 271 -~Llkylt~~Lg~d~iAAeyLllhLlStV~~R~-d~-l~iGkftlNL~ncpkes~f~tqLy~iL~~Llpas~~~pmtie~ 347 (543)
T KOG2545|consen 271 -KLLKYLTKVLGNDNIAAEYLLLHLLSTVYHRT-DG-LVIGKFTLNLTNCPKESIFVTQLYSILRPLLPASVIQPMTIEE 347 (543)
T ss_pred -HHHHHHHHhhcCchHHHHHHHHHHHHHhhccc-cc-eEeeeeEEeecCCCchhHHHHHHHHHHHHhchhhheeeeeHHh
Confidence 23333333334455556677777776542211 11 1223334555554433 4567777888888888765311111
Q ss_pred cccccceeecCcccchhhhccCceeccCCCeeeeccccccCc-------chhhhHHHHHhhceeeeeccceeEeeccceE
Q 002353 572 AVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMND-------QDRVSIHEAMEQQSISISKAGIVTSLQARCS 644 (932)
Q Consensus 572 ~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~-------~~~~~L~eamEqq~isi~kagi~~~l~ar~s 644 (932)
.-...++-.+|..+ ..+.+|.|.+|.+-.++|||=..-.. ..-..|-..+++|.+..--.--...+++++.
T Consensus 348 lNta~f~PkkDyet--NrLvsgvLQlapgThLVLDETeLqqGtLn~vGvhnvq~LsnLI~~Qkl~ydfqyyqme~~~nv~ 425 (543)
T KOG2545|consen 348 LNTAPFYPKKDYET--NRLVSGVLQLAPGTHLVLDETELQQGTLNDVGVHNVQFLSNLISQQKLTYDFQYYQMEVHSNVR 425 (543)
T ss_pred hcccCccccccccc--cccccceeecCCCceEEeehhhcCCCccCccchhhHHHHHHHhhccccceecceEEEEeccCce
Confidence 11112223334332 35789999999999999999642211 1234566778888876654445566777888
Q ss_pred EEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEec-CCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhh
Q 002353 645 VIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVK-DVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEED 723 (932)
Q Consensus 645 IIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~-D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~ 723 (932)
|+..+- ||- -|+. |+.+.+. +.++. +....|
T Consensus 426 vlIlSe---Grs----------ilPA------Dl~i~lqp~~v~~-------------le~~tp---------------- 457 (543)
T KOG2545|consen 426 VLILSE---GRS----------ILPA------DLGIRLQPDSVDT-------------LEFPTP---------------- 457 (543)
T ss_pred EEEeeC---Ccc----------cCcc------cccccCCCCCCCc-------------cccCCh----------------
Confidence 777663 221 1111 1222210 00000 000001
Q ss_pred hhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhC
Q 002353 724 IQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRL 803 (932)
Q Consensus 724 ~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~l 803 (932)
-....+|.|+..+|. ..-.++++..+.|..-|+.||+-... .+...|-.++-+|...++-.+
T Consensus 458 ------------s~l~q~rcyltt~r~-l~~nIsee~t~~iq~dfV~mRq~n~~-----snaddLs~lLv~sRlls~S~G 519 (543)
T KOG2545|consen 458 ------------SDLLQFRCYLTTMRN-LRANISEEMTDYIQSDFVSMRQYNKE-----SNADDLSLLLVCSRLLSKSFG 519 (543)
T ss_pred ------------hHHHHHHHHHHHHHh-hccCccHHHHHHHHHHHHHHHhhCcc-----cchhHHHHHHHHHHHHHHhhc
Confidence 123467888888884 67899999999999999999997543 457788899999999999999
Q ss_pred CCCcCHHHHHHHHHHH
Q 002353 804 RQHVTQEDVNMAIRVL 819 (932)
Q Consensus 804 r~~Vt~~Dv~~AI~l~ 819 (932)
+.+++.+|-..|.++-
T Consensus 520 ~ttlsre~wq~a~ele 535 (543)
T KOG2545|consen 520 RTTLSREDWQAARELE 535 (543)
T ss_pred cchhhHHHHHHHHHHH
Confidence 9999999999887653
No 241
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.31 E-value=0.00012 Score=80.22 Aligned_cols=133 Identities=14% Similarity=0.151 Sum_probs=79.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccc-----hhhhccC-ceec--cCCCeeeeccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTR-----EWTLEGG-ALVL--ADRGICLIDEF 608 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g-----~~~le~G-al~l--Ad~GIl~IDE~ 608 (932)
|.|++||||||||....+++..+... .+.++-...|.++..++...- .+..-.+ .+.. +.-..+++||.
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~---~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEA 140 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSP---HPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEA 140 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCC---CCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecch
Confidence 99999999999999888888765443 111222334455444332110 0111000 0111 12357999999
Q ss_pred cccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCCh
Q 002353 609 DKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDP 688 (932)
Q Consensus 609 dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~ 688 (932)
|.|....|.+|.++.|+- ++++++..-+|+.. .+.+++.|||--+-. -..+.
T Consensus 141 DaMT~~AQnALRRviek~-------------t~n~rF~ii~n~~~-------------ki~pa~qsRctrfrf--~pl~~ 192 (360)
T KOG0990|consen 141 DAMTRDAQNALRRVIEKY-------------TANTRFATISNPPQ-------------KIHPAQQSRCTRFRF--APLTM 192 (360)
T ss_pred hHhhHHHHHHHHHHHHHh-------------ccceEEEEeccChh-------------hcCchhhcccccCCC--CCCCh
Confidence 999999999999877643 34456666677754 788999998863322 22233
Q ss_pred hHhHHHHHHHHh
Q 002353 689 VVDEMLAKFVID 700 (932)
Q Consensus 689 ~~D~~La~~vl~ 700 (932)
..+...-+||+.
T Consensus 193 ~~~~~r~shi~e 204 (360)
T KOG0990|consen 193 AQQTERQSHIRE 204 (360)
T ss_pred hhhhhHHHHHHh
Confidence 344444455554
No 242
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.27 E-value=0.00012 Score=79.09 Aligned_cols=112 Identities=17% Similarity=0.275 Sum_probs=63.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc---EEecCCCcccccccceee----cCcccchhhhccCceeccCCCeeeecccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA---VYTTGKGASAVGLTAAVH----KDPVTREWTLEGGALVLADRGICLIDEFD 609 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~---v~~~g~~ss~~gLta~v~----kd~~~g~~~le~Gal~lAd~GIl~IDE~d 609 (932)
+++|+|+||||||+|+.+++..+... +... +...+...+. ....+....+.. +..--+|+|||++
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i----t~~~l~~~l~~~~~~~~~~~~~~l~~----l~~~dlLvIDDig 172 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLII----TVADIMSAMKDTFSNSETSEEQLLND----LSNVDLLVIDEIG 172 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE----EHHHHHHHHHHHHhhccccHHHHHHH----hccCCEEEEeCCC
Confidence 89999999999999999999876331 1110 1111111110 000011111111 2344699999999
Q ss_pred ccCcch--hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccc
Q 002353 610 KMNDQD--RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRF 676 (932)
Q Consensus 610 km~~~~--~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRF 676 (932)
...... ...|+++++.+. ..+.++|.+||-....+. -.+...++||+
T Consensus 173 ~~~~s~~~~~~l~~Ii~~Ry------------~~~~~tiitSNl~~~~l~--------~~~g~ri~sRl 221 (244)
T PRK07952 173 VQTESRYEKVIINQIVDRRS------------SSKRPTGMLTNSNMEEMT--------KLLGERVMDRM 221 (244)
T ss_pred CCCCCHHHHHHHHHHHHHHH------------hCCCCEEEeCCCCHHHHH--------HHhChHHHHHH
Confidence 876543 346777777542 223467889997653221 13456667766
No 243
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=97.27 E-value=0.00059 Score=81.16 Aligned_cols=190 Identities=16% Similarity=0.206 Sum_probs=103.4
Q ss_pred CCcccccccceeecCcccch-----hhhccCceeccCCCeeeeccccccCc-chhhhHHHHHhhceeeeeccce------
Q 002353 568 KGASAVGLTAAVHKDPVTRE-----WTLEGGALVLADRGICLIDEFDKMND-QDRVSIHEAMEQQSISISKAGI------ 635 (932)
Q Consensus 568 ~~ss~~gLta~v~kd~~~g~-----~~le~Gal~lAd~GIl~IDE~dkm~~-~~~~~L~eamEqq~isi~kagi------ 635 (932)
.+.+...|++.+......|. -.++||+|..|+||+|+|+--+-+.. .....|..+|..+.+.+...+.
T Consensus 296 ~~Pt~~nLfG~Ie~~~~~G~~~td~~~I~~GaLhkANGGyLIL~a~~LL~~p~~W~~LKr~L~~~~i~ie~~~~~~~~~~ 375 (509)
T PF13654_consen 296 DNPTYSNLFGRIEYESEMGTLVTDFTLIKPGALHKANGGYLILDAEDLLANPYAWERLKRALRTGEIEIESPEEYGLSST 375 (509)
T ss_dssp TT--HHHHH-EE-----------GGGGEE--HHHHTTTSEEEETTGGGS-HHH-HHHHHHHHHHSEE--B-S---TTSGG
T ss_pred CCCCHHHCcEEEEEECCCCCEecCcceEcCceEEecCCeEEEEEHHHhhhChHHHHHHHHHHHcCceeeccccccccCCC
Confidence 35556667777766553332 23689999999999999999888874 4578899999999998865531
Q ss_pred ----eEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCC
Q 002353 636 ----VTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVN 711 (932)
Q Consensus 636 ----~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~ 711 (932)
...+|.++.||-..++.. | ..-...++.+..-|.+..-+
T Consensus 376 ~~l~PepIpl~vKVILiG~~~~--y------~~L~~~D~dF~~lFkv~aef----------------------------- 418 (509)
T PF13654_consen 376 VSLEPEPIPLDVKVILIGDREL--Y------YLLYEYDPDFYKLFKVKAEF----------------------------- 418 (509)
T ss_dssp GG-B-S-EE---EEEEEE-TTH--H------HHS-HHHHHHHHHHSEEEE------------------------------
T ss_pred CCCCCCCcceEEEEEEEcCHHH--H------HHHHHhCHHHHhCCCEEEEc-----------------------------
Confidence 112344555555555421 0 00001122222222222211
Q ss_pred CCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHH----hhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHH
Q 002353 712 LDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYA----KLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRH 787 (932)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~ya----r~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~ 787 (932)
+ ..-.++.+-++.|+.|. +++--|.|+..|...|.++.+.+ +. ...+.....
T Consensus 419 -~------------------~~~~~~~e~~~~~~~~i~~~~~~~~L~~~~~~Av~~li~~~~R~---~q--~kLsl~~~~ 474 (509)
T PF13654_consen 419 -D------------------SEMPRTEENIRQYARFIASICQKEGLPPFDRSAVARLIEYSARL---DQ--DKLSLRFSW 474 (509)
T ss_dssp --------------------SEEE--HHHHHHHHHHHHHHHHHHSS--BBHHHHHHHHHHHHHC---C---SEEE--HHH
T ss_pred -c------------------ccCCCCHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH---hC--CEeCCCHHH
Confidence 0 00113445566666644 34445789999999999997754 22 256778889
Q ss_pred HHHHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Q 002353 788 IESMIRMSEAHARMRLRQHVTQEDVNMAIRV 818 (932)
Q Consensus 788 LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l 818 (932)
|..|++-|-+.|+......|+.+||..||.-
T Consensus 475 l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~ 505 (509)
T PF13654_consen 475 LADLLREANYWARKEGAKVITAEHVEQAIEE 505 (509)
T ss_dssp HHHHHHHHHHHHHHCT-SSB-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHHc
Confidence 9999999999999999999999999999863
No 244
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.25 E-value=0.00054 Score=76.90 Aligned_cols=100 Identities=20% Similarity=0.204 Sum_probs=68.6
Q ss_pred cCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChh
Q 002353 592 GGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDP 671 (932)
Q Consensus 592 ~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~ 671 (932)
.|.+..|++|++=+=|+-|.+.+....||.+.++|.+... +....++.+..|||.||+.. |+ .|..| .-.++
T Consensus 226 ~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~~--~~~~~i~~D~liiAhsNe~E--~~---~f~~~-~~~eA 297 (358)
T PF08298_consen 226 SGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKVD--EDFGMIPFDELIIAHSNEEE--YN---KFKNN-KNNEA 297 (358)
T ss_pred ccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceecC--CcccccccceeEEecCCHHH--HH---HHhcc-ccchh
Confidence 4889999999988889999999988899999999987652 23334678889999999853 21 12111 22379
Q ss_pred hhccccEEEEecCCCChhHhHHHHHHHHh
Q 002353 672 IISRFDVLCVVKDVVDPVVDEMLAKFVID 700 (932)
Q Consensus 672 LLsRFDli~~l~D~~d~~~D~~La~~vl~ 700 (932)
|++|+.++-+ .=..+-....+|.+.++.
T Consensus 298 f~DRi~~I~V-PY~L~~s~E~kIY~k~~~ 325 (358)
T PF08298_consen 298 FKDRIEVIKV-PYCLRVSEEVKIYEKLIG 325 (358)
T ss_pred hhhheEEEec-cccCCHHHHHHHHHHHhh
Confidence 9999965544 222233444566666654
No 245
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.24 E-value=5.2e-05 Score=85.42 Aligned_cols=115 Identities=18% Similarity=0.235 Sum_probs=61.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc----EEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA----VYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMN 612 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~----v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~ 612 (932)
+++|+|+||||||+|+.++++.+-+. +|.+ +..+...+...........+...-.+.+--+|+||+++...
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t-----~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~ 259 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT-----ADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEK 259 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE-----HHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCC
Confidence 89999999999999999999875321 1111 11111111000000000000000112233589999997654
Q ss_pred --cchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccc
Q 002353 613 --DQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRF 676 (932)
Q Consensus 613 --~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRF 676 (932)
+..+..|+++++... ..+.++|.|||-....+. -.+++.++||+
T Consensus 260 ~t~~~~~~Lf~iin~R~------------~~~k~tIiTSNl~~~el~--------~~~~eri~SRL 305 (329)
T PRK06835 260 ITEFSKSELFNLINKRL------------LRQKKMIISTNLSLEELL--------KTYSERISSRL 305 (329)
T ss_pred CCHHHHHHHHHHHHHHH------------HCCCCEEEECCCCHHHHH--------HHHhHHHHHHH
Confidence 344567778777542 122357889987543221 02456667765
No 246
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.19 E-value=0.0045 Score=67.62 Aligned_cols=123 Identities=17% Similarity=0.202 Sum_probs=83.2
Q ss_pred HHHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCccc
Q 002353 493 GERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASA 572 (932)
Q Consensus 493 ~~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~ 572 (932)
+.-|-..+.-.++||..+|..|+-++.|-.... .-+...-+=|.|.|||||+.+++.|++..-+ .|..+..
T Consensus 73 ~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~-----~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~----~Gl~S~~ 143 (344)
T KOG2170|consen 73 LDGLEKDLARALFGQHLAKQLVVNALKSHWANP-----NPRKPLVLSFHGWTGTGKNYVAEIIAENLYR----GGLRSPF 143 (344)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHHHHHHhcCC-----CCCCCeEEEecCCCCCchhHHHHHHHHHHHh----ccccchh
Confidence 456777788889999999999999888753221 1344557788999999999999999987543 3444444
Q ss_pred ccccceeecCccc---chhhhc-----cCceeccCCCeeeeccccccCcchhhhHHHHHh
Q 002353 573 VGLTAAVHKDPVT---REWTLE-----GGALVLADRGICLIDEFDKMNDQDRVSIHEAME 624 (932)
Q Consensus 573 ~gLta~v~kd~~~---g~~~le-----~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamE 624 (932)
+-...+...-|.. ..+..+ .|.+....+.++++||.|||++.....|+..++
T Consensus 144 V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 144 VHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred HHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 4332221111110 111111 234445677899999999999998888888887
No 247
>PF13148 DUF3987: Protein of unknown function (DUF3987)
Probab=97.18 E-value=0.0038 Score=71.61 Aligned_cols=185 Identities=19% Similarity=0.193 Sum_probs=110.4
Q ss_pred CCeeeecccccc----Cc----chhhhHHHHHhhceeeeecccee-Ee-eccceEEEeeeCCCCC-ccCCCCCcccccCC
Q 002353 600 RGICLIDEFDKM----ND----QDRVSIHEAMEQQSISISKAGIV-TS-LQARCSVIAAANPVGG-RYDSSKTFSENVEL 668 (932)
Q Consensus 600 ~GIl~IDE~dkm----~~----~~~~~L~eamEqq~isi~kagi~-~~-l~ar~sIIAAaNp~~G-ry~~~~~~~~ni~L 668 (932)
+..++.||+..+ .. .....|+++-..+.+++.+.+.. .. -+.+++|++++.|..- +.-. .-....-.
T Consensus 150 ~~l~~~dE~~~~~~~~~~~~~~~~~~~ll~~~dg~~~~~~R~~~~~~~i~~~~lsi~~~~QP~~l~~~~~--~~~~~~~~ 227 (378)
T PF13148_consen 150 GLLLFSDEGGGLLNSMGRYGGGSDRDLLLKAWDGEPYSIDRKSRGSIYIENPRLSILGGIQPDVLKREIL--SAEDPEFR 227 (378)
T ss_pred eEEEEchhHHHHHHHhhcccCCccHHHHHHHhCCCCeeeeeccCCcccCCCceEEEEeccChHHHHHHHh--hhhccccc
Confidence 457888998654 22 44567777778788887665533 22 3578899999988431 1100 00011235
Q ss_pred ChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHH-------H
Q 002353 669 TDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDL-------L 741 (932)
Q Consensus 669 ~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-------L 741 (932)
..-|++||= |.+.+....... ... .....+... +
T Consensus 228 ~~Gll~RfL--~~~p~~~~~~~~-------------~~~------------------------~~~~~~~~~~~~~~~~i 268 (378)
T PF13148_consen 228 GDGLLARFL--FVIPDSRKGRRF-------------EFP------------------------VPEPIDDEALEAYHERI 268 (378)
T ss_pred CCChHhhee--eeccCccccccc-------------ccC------------------------CCCcccHHHHHHHHHHH
Confidence 668899997 333221111000 000 000111222 2
Q ss_pred HHHHHHHh--hcCCC---cCChhHHHHHHHHHHHHHhcc-cCCCCc---ccCHHHHHHHHHHHHHHHHhh-----CCCCc
Q 002353 742 KKYITYAK--LNVFP---RLHDPDMEKLTHVYAELRRES-SHGQGV---PIAVRHIESMIRMSEAHARMR-----LRQHV 807 (932)
Q Consensus 742 rkyI~yar--~~~~P---~Ls~ea~~~L~~~Y~~lR~~~-~~~~~~---pitvR~LEslIRlAeA~Akl~-----lr~~V 807 (932)
+....... ....| .|+++|...+.++|..+..+. ...+.+ ..-.|.-+.++|+|-.++-++ ....|
T Consensus 269 ~~l~~~~~~~~~~~~~~l~ls~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~RlA~ilh~~~~~~~~~~~~I 348 (378)
T PF13148_consen 269 KELLDWPPEDGSDEPIVLELSDEAKELFREWYNELENELRQPGGDLAMRSFASKAAEQALRLALILHLFESGGSPPSTEI 348 (378)
T ss_pred HHHHhhhhcccCCCCeEEecCHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCEE
Confidence 22222221 11233 799999999999999988776 223322 244677889999999999999 88999
Q ss_pred CHHHHHHHHHHHHhhhhh
Q 002353 808 TQEDVNMAIRVLLDSFIS 825 (932)
Q Consensus 808 t~~Dv~~AI~l~~~S~~~ 825 (932)
+.+++..||.++.-.+-.
T Consensus 349 ~~~~~~~Ai~l~~~~~~~ 366 (378)
T PF13148_consen 349 SAETMERAIRLVEYFLEH 366 (378)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999998765433
No 248
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.14 E-value=0.00068 Score=76.53 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=43.6
Q ss_pred cCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhcccc
Q 002353 598 ADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFD 677 (932)
Q Consensus 598 Ad~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFD 677 (932)
+..-|++||++++|+....++|+..||+- +..+.+|.+|+... .|.+++.||+-
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEP-------------p~~~~fiL~t~~~~-------------~ll~TI~SRc~ 158 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEP-------------SGDTVLLLISHQPS-------------RLLPTIKSRCQ 158 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCC-------------CCCeEEEEEECChh-------------hCcHHHHhhce
Confidence 34569999999999999999999999962 12334444444333 68899999998
Q ss_pred EEEE
Q 002353 678 VLCV 681 (932)
Q Consensus 678 li~~ 681 (932)
.+.+
T Consensus 159 ~~~~ 162 (328)
T PRK05707 159 QQAC 162 (328)
T ss_pred eeeC
Confidence 8655
No 249
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.01 Score=71.63 Aligned_cols=145 Identities=17% Similarity=0.122 Sum_probs=84.6
Q ss_pred ccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCccc-------chhhhccCceeccCCCeee
Q 002353 532 LRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVT-------REWTLEGGALVLADRGICL 604 (932)
Q Consensus 532 ~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~-------g~~~le~Gal~lAd~GIl~ 604 (932)
+.....+||.|+||+||+++.+++++.+...++.... ..+++.......+ ......+-.+.+++--++-
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc----~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~ 503 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDC----YELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLG 503 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccH----HHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceee
Confidence 4556699999999999999999999999998886321 1122211111111 1112234445555555555
Q ss_pred eccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecC
Q 002353 605 IDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKD 684 (932)
Q Consensus 605 IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D 684 (932)
||-.+-.. ..+..+|++..- + .....-..++.|||+++... .+++.+.+-|-..+.+ +
T Consensus 504 id~dgged----~rl~~~i~~~ls-~---e~~~~~~~~~ivv~t~~s~~-------------~lp~~i~~~f~~ei~~-~ 561 (953)
T KOG0736|consen 504 IDQDGGED----ARLLKVIRHLLS-N---EDFKFSCPPVIVVATTSSIE-------------DLPADIQSLFLHEIEV-P 561 (953)
T ss_pred ecCCCchh----HHHHHHHHHHHh-c---ccccCCCCceEEEEeccccc-------------cCCHHHHHhhhhhccC-C
Confidence 55555211 234444443321 0 00111134578899999876 7888888877666665 5
Q ss_pred CCChhHhHHHHHHHHhhc
Q 002353 685 VVDPVVDEMLAKFVIDSH 702 (932)
Q Consensus 685 ~~d~~~D~~La~~vl~~h 702 (932)
.+++++...+.+..++.+
T Consensus 562 ~lse~qRl~iLq~y~~~~ 579 (953)
T KOG0736|consen 562 ALSEEQRLEILQWYLNHL 579 (953)
T ss_pred CCCHHHHHHHHHHHHhcc
Confidence 566666666666655543
No 250
>PRK06921 hypothetical protein; Provisional
Probab=97.08 E-value=0.00019 Score=78.61 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=22.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
+++|+|+||||||+|+.++++.+.
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHh
Confidence 899999999999999999988654
No 251
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.03 E-value=0.00036 Score=91.45 Aligned_cols=139 Identities=15% Similarity=0.243 Sum_probs=102.2
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCcEEec--CCCcccccccceeecCcccchhhhccCceecc--CCCeeeecccccc
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRAVYTT--GKGASAVGLTAAVHKDPVTREWTLEGGALVLA--DRGICLIDEFDKM 611 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~v~~~--g~~ss~~gLta~v~kd~~~g~~~le~Gal~lA--d~GIl~IDE~dkm 611 (932)
.++||.||.|+|||.+++++++...+.+... +.......+.++..- ..+|....+-|+++.| +|-.|++||++..
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~-~~~g~l~freg~LV~Alr~G~~~vlD~lnla 519 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVA-DDNGDLVFREGVLVQALRNGDWIVLDELNLA 519 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhc-CCCCCeeeehhHHHHHHHhCCEEEecccccc
Confidence 4899999999999999999999877654442 222223333332111 2245566778888877 6789999999999
Q ss_pred CcchhhhHHHHHhh-ceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEe
Q 002353 612 NDQDRVSIHEAMEQ-QSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVV 682 (932)
Q Consensus 612 ~~~~~~~L~eamEq-q~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l 682 (932)
+.+...+|...+++ +.+.+...........++.+.|+-||.. .| .+.-.+..++++||.-+.+.
T Consensus 520 ~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~-~y------~grk~lsRa~~~rf~e~~f~ 584 (1856)
T KOG1808|consen 520 PHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPG-TY------GGRKILSRALRNRFIELHFD 584 (1856)
T ss_pred chHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCcc-cc------chhhhhhhcccccchhhhhh
Confidence 99999999999998 7788866666666677788889999853 33 33336788999999876654
No 252
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.83 E-value=0.00039 Score=66.83 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=19.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.++++|+||+|||.+++.+++..
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHh
Confidence 89999999999999999998865
No 253
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.80 E-value=0.0015 Score=68.59 Aligned_cols=98 Identities=18% Similarity=0.285 Sum_probs=68.9
Q ss_pred CCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCc
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMND 613 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~ 613 (932)
-+.-++|+|+-|+|||++++.+... .|+.... ....++ . ...+...-+++|||++.+..
T Consensus 51 ~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~-------~~~~kd-----~-----~~~l~~~~iveldEl~~~~k 109 (198)
T PF05272_consen 51 NDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSIN-------DFDDKD-----F-----LEQLQGKWIVELDELDGLSK 109 (198)
T ss_pred CceeeeEecCCcccHHHHHHHHhHH----hccCccc-------cCCCcH-----H-----HHHHHHhHheeHHHHhhcch
Confidence 3458899999999999999988433 3332100 000011 1 11233446899999999998
Q ss_pred chhhhHHHHHhhceeeeecc--ceeEeeccceEEEeeeCCC
Q 002353 614 QDRVSIHEAMEQQSISISKA--GIVTSLQARCSVIAAANPV 652 (932)
Q Consensus 614 ~~~~~L~eamEqq~isi~ka--gi~~~l~ar~sIIAAaNp~ 652 (932)
.+...|...+...++++.+. .....++-++++|||||..
T Consensus 110 ~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~ 150 (198)
T PF05272_consen 110 KDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDD 150 (198)
T ss_pred hhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCc
Confidence 88899999998888877654 3456778889999999974
No 254
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.78 E-value=0.0041 Score=63.57 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=19.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
|++|+|+||+|||++++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 79999999999999999887765
No 255
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.77 E-value=0.045 Score=59.80 Aligned_cols=179 Identities=19% Similarity=0.269 Sum_probs=112.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcchh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDR 616 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~ 616 (932)
-.|+.|++|-=|+..=..+... --+|.-++.|-. -.|||||||...++-+-.
T Consensus 254 lALFsGdTGEIr~EvRdqin~K--------------------------V~eWreEGKAei--vpGVLFIDEvHMLDIEcF 305 (454)
T KOG2680|consen 254 LALFSGDTGEIRSEVRDQINTK--------------------------VAEWREEGKAEI--VPGVLFIDEVHMLDIECF 305 (454)
T ss_pred EEEEeCCcccccHHHHHHHHHH--------------------------HHHHHhcCCeee--ccceEEEeeehhhhhHHH
Confidence 5788899988888765444321 124555543322 248999999999999988
Q ss_pred hhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHH
Q 002353 617 VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAK 696 (932)
Q Consensus 617 ~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~ 696 (932)
..|..|+|..--. .+|.|+|.--.+-.. -.+..--.+|-.||+|.-++-.. |
T Consensus 306 sFlNrAlE~d~~P--------------iiimaTNrgit~iRG-Tn~~SphGiP~D~lDR~lII~t~---p---------- 357 (454)
T KOG2680|consen 306 SFLNRALENDMAP--------------IIIMATNRGITRIRG-TNYRSPHGIPIDLLDRMLIISTQ---P---------- 357 (454)
T ss_pred HHHHHHhhhccCc--------------EEEEEcCCceEEeec-CCCCCCCCCcHHHhhhhheeecc---c----------
Confidence 9999999965322 244555542211100 00011126788888887444332 1
Q ss_pred HHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhccc
Q 002353 697 FVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESS 776 (932)
Q Consensus 697 ~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~ 776 (932)
.+.+.+++.+..--+--...++++|.+.|...
T Consensus 358 ---------------------------------------y~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i--------- 389 (454)
T KOG2680|consen 358 ---------------------------------------YTEEDIKKILRIRCQEEDVEMNPDALDLLTKI--------- 389 (454)
T ss_pred ---------------------------------------CcHHHHHHHHHhhhhhhccccCHHHHHHHHHh---------
Confidence 22233333333111111336778888888765
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhh
Q 002353 777 HGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDS 822 (932)
Q Consensus 777 ~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S 822 (932)
+...++|---.||-.|.-.|.-+-...|..+|+..|.+||+..
T Consensus 390 ---~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~LFlD~ 432 (454)
T KOG2680|consen 390 ---GEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRLFLDE 432 (454)
T ss_pred ---hhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHHHhhh
Confidence 3345788888889888888888889999999999999999876
No 256
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.76 E-value=0.0055 Score=65.03 Aligned_cols=119 Identities=26% Similarity=0.262 Sum_probs=68.3
Q ss_pred ccChHHHHHHHhh---hhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceee
Q 002353 504 IYGHEDIKTALAL---SMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVH 580 (932)
Q Consensus 504 I~G~~~vK~aill---aL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~ 580 (932)
|.|.+..|.+++- .++.|-+.+ ||||+|--|||||.|.|++...... .+...+ -+.
T Consensus 62 l~Gvd~qk~~L~~NT~~F~~G~pAN-----------nVLLwGaRGtGKSSLVKA~~~e~~~------~glrLV----EV~ 120 (287)
T COG2607 62 LVGVDRQKEALVRNTEQFAEGLPAN-----------NVLLWGARGTGKSSLVKALLNEYAD------EGLRLV----EVD 120 (287)
T ss_pred HhCchHHHHHHHHHHHHHHcCCccc-----------ceEEecCCCCChHHHHHHHHHHHHh------cCCeEE----EEc
Confidence 5688888888873 444553322 9999999999999999999765321 111111 111
Q ss_pred cCcccchhhhccCceeccCCCeeeeccccccCcch-hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCC
Q 002353 581 KDPVTREWTLEGGALVLADRGICLIDEFDKMNDQD-RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPV 652 (932)
Q Consensus 581 kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~-~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~ 652 (932)
++....--.+-.-.-....+-|+|+|++.-=..+. ..+|..+|| |.+...|.++.|.||+|..
T Consensus 121 k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~Le---------G~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 121 KEDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALE---------GGVEGRPANVLFYATSNRR 184 (287)
T ss_pred HHHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhc---------CCcccCCCeEEEEEecCCc
Confidence 21100000000000012244589999976433333 345566665 2334558889999999984
No 257
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.70 E-value=0.0014 Score=74.88 Aligned_cols=132 Identities=16% Similarity=0.163 Sum_probs=64.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe-cCCCcccccccceeecCcccchhhhccCceeccCCC-eeeeccccccCcc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT-TGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRG-ICLIDEFDKMNDQ 614 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~-~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~G-Il~IDE~dkm~~~ 614 (932)
++.|+|++|+|||.|+-.....+|..-.. .+-......+...+.+-. .+...+..-+-.++.+. +||+|||.--+..
T Consensus 64 GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~-~~~~~l~~va~~l~~~~~lLcfDEF~V~Dia 142 (362)
T PF03969_consen 64 GLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLR-GQDDPLPQVADELAKESRLLCFDEFQVTDIA 142 (362)
T ss_pred eEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHh-CCCccHHHHHHHHHhcCCEEEEeeeeccchh
Confidence 79999999999999999988887652100 000011111111110000 00011111122234444 9999999876555
Q ss_pred hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccc-cCCChhhhccccEEEE
Q 002353 615 DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSEN-VELTDPIISRFDVLCV 681 (932)
Q Consensus 615 ~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~n-i~L~~~LLsRFDli~~ 681 (932)
+--.|-..++. + +...+.+|||+|..+....++.-..+. ...-..|-++|+++-+
T Consensus 143 DAmil~rLf~~----l--------~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~l 198 (362)
T PF03969_consen 143 DAMILKRLFEA----L--------FKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVEL 198 (362)
T ss_pred HHHHHHHHHHH----H--------HHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEe
Confidence 53333333331 1 123457899999977433333222211 1122234446665554
No 258
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.69 E-value=0.0062 Score=73.12 Aligned_cols=79 Identities=24% Similarity=0.269 Sum_probs=47.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhcc---Cceec-cC--CCeeeeccccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEG---GALVL-AD--RGICLIDEFDK 610 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~---Gal~l-Ad--~GIl~IDE~dk 610 (932)
-+||+|+||.|||+||..+|+.++-++.- +.|+-.+.+..-.-.++. ---++ |+ -.+++|||||-
T Consensus 328 ilLL~GppGlGKTTLAHViAkqaGYsVvE---------INASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQAGYSVVE---------INASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDG 398 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhcCceEEE---------ecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccC
Confidence 58999999999999999999988655432 333322221100000000 00112 22 24788999999
Q ss_pred cCcchhhhHHHHHh
Q 002353 611 MNDQDRVSIHEAME 624 (932)
Q Consensus 611 m~~~~~~~L~eamE 624 (932)
.+...-..|+..++
T Consensus 399 a~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 399 APRAAVDVILSLVK 412 (877)
T ss_pred CcHHHHHHHHHHHH
Confidence 88666666666665
No 259
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.69 E-value=0.0034 Score=70.53 Aligned_cols=56 Identities=16% Similarity=0.187 Sum_probs=43.1
Q ss_pred CCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEE
Q 002353 600 RGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVL 679 (932)
Q Consensus 600 ~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli 679 (932)
.-|++||+.++|+....++|+..||+= +.++.+|-.|+... .|.+++.||+-.+
T Consensus 114 ~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~~~fiL~~~~~~-------------~lLpTIrSRCq~i 167 (319)
T PRK08769 114 AQVVIVDPADAINRAACNALLKTLEEP-------------SPGRYLWLISAQPA-------------RLPATIRSRCQRL 167 (319)
T ss_pred cEEEEeccHhhhCHHHHHHHHHHhhCC-------------CCCCeEEEEECChh-------------hCchHHHhhheEe
Confidence 459999999999999999999999952 23444444554333 6889999999877
Q ss_pred EE
Q 002353 680 CV 681 (932)
Q Consensus 680 ~~ 681 (932)
-+
T Consensus 168 ~~ 169 (319)
T PRK08769 168 EF 169 (319)
T ss_pred eC
Confidence 65
No 260
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.58 E-value=0.00094 Score=74.72 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=22.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
+++|+|+||||||+|+.++++.+.
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999998764
No 261
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.57 E-value=0.0058 Score=69.35 Aligned_cols=56 Identities=13% Similarity=0.168 Sum_probs=42.1
Q ss_pred CCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccce-EEEeeeCCCCCccCCCCCcccccCCChhhhcccc
Q 002353 599 DRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARC-SVIAAANPVGGRYDSSKTFSENVELTDPIISRFD 677 (932)
Q Consensus 599 d~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~-sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFD 677 (932)
..-|++||+.++|+....++|+..||+= +..+ .|+.|.||. .|.+.++||+-
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~~~--------------~LLpTI~SRcq 184 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEP-------------PPGTVFLLVSARID--------------RLLPTILSRCR 184 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCC-------------CcCcEEEEEECChh--------------hCcHHHHhcCE
Confidence 3459999999999999999999999942 2233 445555553 78999999995
Q ss_pred EEEE
Q 002353 678 VLCV 681 (932)
Q Consensus 678 li~~ 681 (932)
.+.+
T Consensus 185 ~i~~ 188 (342)
T PRK06964 185 QFPM 188 (342)
T ss_pred EEEe
Confidence 4444
No 262
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.56 E-value=0.04 Score=70.36 Aligned_cols=230 Identities=16% Similarity=0.123 Sum_probs=120.1
Q ss_pred eEEEeCCCCchHHHHHH-HHHHhCCCc-EEecCCCccccc-ccceeec----CcccchhhhccCceeccCCCeeeecccc
Q 002353 537 NVLLLGDPGTAKSQFLK-YVEKTGQRA-VYTTGKGASAVG-LTAAVHK----DPVTREWTLEGGALVLADRGICLIDEFD 609 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak-~va~~~~r~-v~~~g~~ss~~g-Lta~v~k----d~~~g~~~le~Gal~lAd~GIl~IDE~d 609 (932)
.++++||||+|||.|.- ++-..+--. ++..-...+... ......+ -+.||..++-|...+ ..+|+|.|||+
T Consensus 1496 ~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~v--K~lVLFcDeIn 1573 (3164)
T COG5245 1496 SYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVV--KDLVLFCDEIN 1573 (3164)
T ss_pred eEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcch--hheEEEeeccC
Confidence 68999999999999643 222111111 111111111110 1111111 122333333332222 35899999998
Q ss_pred ccCcc-------hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEe
Q 002353 610 KMNDQ-------DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVV 682 (932)
Q Consensus 610 km~~~-------~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l 682 (932)
||.. +-..|...||.|-+.-+-+....+ -++.-+.+||||.-. ...+.+++.+++|=-++|+
T Consensus 1574 -Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvT-I~~i~l~Gacnp~td--------~gRv~~~eRf~r~~v~vf~- 1642 (3164)
T COG5245 1574 -LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVT-ICGIILYGACNPGTD--------EGRVKYYERFIRKPVFVFC- 1642 (3164)
T ss_pred -CccccccCCCceEEeeHHHHHhcccccchhhhHhh-hcceEEEccCCCCCC--------cccCccHHHHhcCceEEEe-
Confidence 6543 345666888876654333332222 246788999999541 1123677788877666666
Q ss_pred cCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHH
Q 002353 683 KDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDME 762 (932)
Q Consensus 683 ~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~ 762 (932)
+.|....-..+.+.++.-.. +-.+.++ .++++.+.
T Consensus 1643 -~ype~~SL~~Iyea~l~~s~--------------------------------l~~~ef~------------~~se~~~~ 1677 (3164)
T COG5245 1643 -CYPELASLRNIYEAVLMGSY--------------------------------LCFDEFN------------RLSEETMS 1677 (3164)
T ss_pred -cCcchhhHHHHHHHHHHHHH--------------------------------HhhHHHH------------HHHHHHHH
Confidence 45544333333332222100 0111122 24444555
Q ss_pred HHHHHHHHHHhcccC--CCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHH----HHHHHHHHHhhhhh
Q 002353 763 KLTHVYAELRRESSH--GQGVPIAVRHIESMIRMSEAHARMRLRQHVTQED----VNMAIRVLLDSFIS 825 (932)
Q Consensus 763 ~L~~~Y~~lR~~~~~--~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~D----v~~AI~l~~~S~~~ 825 (932)
.-.++|..+|...+. ...+..++|+|-.++|---..|--+-+. -...+ ..+|++++..-+.+
T Consensus 1678 aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~yaeT~~~t-~~~slI~~wy~ea~r~~~dRLV~ 1745 (3164)
T COG5245 1678 ASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFGYAETRIDT-PDVSLIIDWYCEAIREKIDRLVQ 1745 (3164)
T ss_pred HHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHhHHhcCCCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 556778877765432 2357789999999988766655433222 22223 24678887776665
No 263
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.55 E-value=0.0089 Score=59.99 Aligned_cols=26 Identities=15% Similarity=0.468 Sum_probs=22.1
Q ss_pred CceEEEeCCCCchHHHHHHHHHHhCC
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.+.+.|+||+|||+++..++..+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 34899999999999999999986543
No 264
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.52 E-value=0.0081 Score=67.72 Aligned_cols=118 Identities=14% Similarity=0.210 Sum_probs=68.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC----CcEEecCCCcccccccceeecC-----cc----cch---hhhccC---ceec
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ----RAVYTTGKGASAVGLTAAVHKD-----PV----TRE---WTLEGG---ALVL 597 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~----r~v~~~g~~ss~~gLta~v~kd-----~~----~g~---~~le~G---al~l 597 (932)
-.||.|++|+||+.+|+.+++.+. .....+|.-.+-.-+.++...| +. -+. ..+... .-..
T Consensus 26 A~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~ 105 (325)
T PRK06871 26 ALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQ 105 (325)
T ss_pred eEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcccc
Confidence 678999999999999999998642 1111222111100000000000 00 000 000000 0012
Q ss_pred cCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccc-eEEEeeeCCCCCccCCCCCcccccCCChhhhccc
Q 002353 598 ADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQAR-CSVIAAANPVGGRYDSSKTFSENVELTDPIISRF 676 (932)
Q Consensus 598 Ad~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar-~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRF 676 (932)
+...|++||+.++|+....++|+..||+= +.. ..|+.|.|+. .|.+.++||+
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEP-------------p~~~~fiL~t~~~~--------------~llpTI~SRC 158 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEP-------------RPNTYFLLQADLSA--------------ALLPTIYSRC 158 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECChH--------------hCchHHHhhc
Confidence 23469999999999999999999999952 222 3455555653 7889999999
Q ss_pred cEEEE
Q 002353 677 DVLCV 681 (932)
Q Consensus 677 Dli~~ 681 (932)
-.+.+
T Consensus 159 ~~~~~ 163 (325)
T PRK06871 159 QTWLI 163 (325)
T ss_pred eEEeC
Confidence 87765
No 265
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.50 E-value=0.028 Score=62.25 Aligned_cols=59 Identities=24% Similarity=0.330 Sum_probs=39.6
Q ss_pred HHHHhhcccccChHHHHHHHh--hhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 495 RIIKSIAPSIYGHEDIKTALA--LSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 495 ~l~~siap~I~G~~~vK~ail--laL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
+|..--.|--.|+...+.++- -.|+...+ .+|. .++||+|++|.|||++++...+.-|.
T Consensus 27 RI~~i~~~rWIgY~~A~~~L~~L~~Ll~~P~-----~~Rm---p~lLivG~snnGKT~Ii~rF~~~hp~ 87 (302)
T PF05621_consen 27 RIAYIRADRWIGYPRAKEALDRLEELLEYPK-----RHRM---PNLLIVGDSNNGKTMIIERFRRLHPP 87 (302)
T ss_pred HHHHHhcCCeecCHHHHHHHHHHHHHHhCCc-----ccCC---CceEEecCCCCcHHHHHHHHHHHCCC
Confidence 444444666778888887764 23443311 1221 28999999999999999988877554
No 266
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.46 E-value=0.024 Score=63.40 Aligned_cols=139 Identities=14% Similarity=0.166 Sum_probs=76.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcchh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDR 616 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~ 616 (932)
=++|+|+.|+|||++++.+..+.+....+. .+...+. ... ...+ +.-.+..+-+++.||+..-.....
T Consensus 78 ~~~l~G~g~nGKStl~~~l~~l~G~~~~~~---~~~~~~~-~~~----~~~f----~~a~l~gk~l~~~~E~~~~~~~~~ 145 (304)
T TIGR01613 78 LFFLYGNGGNGKSTFQNLLSNLLGDYATTA---VASLKMN-EFQ----EHRF----GLARLEGKRAVIGDEVQKGYRDDE 145 (304)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhChhhccC---Ccchhhh-hcc----CCCc----hhhhhcCCEEEEecCCCCCccccH
Confidence 689999999999999999998875432100 0111111 110 0011 111234455788999875333333
Q ss_pred hhHHHHHhhceeeeeccc-eeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHH
Q 002353 617 VSIHEAMEQQSISISKAG-IVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLA 695 (932)
Q Consensus 617 ~~L~eamEqq~isi~kag-i~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La 695 (932)
..|..+.....+++.+-+ ........+.+|.+||..+.-- ..+.++.+|+-++-.-.-.++...|..|.
T Consensus 146 ~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~----------~~~~a~~RR~~vi~f~~~~~~~~~d~~l~ 215 (304)
T TIGR01613 146 STFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIR----------GFDGGIKRRLRIIPFTKVFPGEKKNKALK 215 (304)
T ss_pred HhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccC----------CCChhheeeEEEEeccCcCCccccCccHH
Confidence 445555555666665333 2345566788999999765211 34567888885444322223333344444
Q ss_pred HH
Q 002353 696 KF 697 (932)
Q Consensus 696 ~~ 697 (932)
+.
T Consensus 216 ~k 217 (304)
T TIGR01613 216 ED 217 (304)
T ss_pred HH
Confidence 33
No 267
>PHA02774 E1; Provisional
Probab=96.40 E-value=0.013 Score=69.88 Aligned_cols=98 Identities=22% Similarity=0.213 Sum_probs=58.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccC-cch
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMN-DQD 615 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~-~~~ 615 (932)
+++|+||||||||+|+-++.+.+...+.. .+. .+ ..|.+. .+++.-+++|||+..-- .-.
T Consensus 436 civ~~GPP~TGKS~fa~sL~~~L~G~vi~------fvN-----~~----s~FwLq----pl~d~ki~vlDD~t~~~w~y~ 496 (613)
T PHA02774 436 CLVIYGPPDTGKSMFCMSLIKFLKGKVIS------FVN-----SK----SHFWLQ----PLADAKIALLDDATHPCWDYI 496 (613)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEE------EEE-----Cc----cccccc----hhccCCEEEEecCcchHHHHH
Confidence 89999999999999999999987422211 110 01 122222 24566799999993211 111
Q ss_pred hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCC
Q 002353 616 RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVG 653 (932)
Q Consensus 616 ~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~ 653 (932)
...|..+|+-+.++|.+.-....--....+|.|||...
T Consensus 497 d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~ 534 (613)
T PHA02774 497 DTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDV 534 (613)
T ss_pred HHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCc
Confidence 23577777777777743221111122346788999644
No 268
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.32 E-value=0.0054 Score=59.40 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=48.4
Q ss_pred HHHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhC
Q 002353 493 GERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 493 ~~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~ 559 (932)
...|-.++.-.+|||..++..++-++-+-.... .-+..+-+.|.|+||||||.+++.||+.+
T Consensus 16 ~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~-----~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 16 ITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANP-----NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCC-----CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 456777888899999999999988887653221 22344577899999999999999999864
No 269
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.23 E-value=0.013 Score=57.67 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
+++|+|+||+|||+++..++..+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999877653
No 270
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.18 E-value=0.007 Score=68.33 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=42.0
Q ss_pred cCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhcccc
Q 002353 598 ADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFD 677 (932)
Q Consensus 598 Ad~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFD 677 (932)
+...|++||+++.|+...+.+|+..||+-. ..+.+|.+|+... .+.+++.||+-
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~-------------~~~~~Ilvth~~~-------------~ll~ti~SRc~ 165 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPP-------------PQVVFLLVSHAAD-------------KVLPTIKSRCR 165 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCc-------------CCCEEEEEeCChH-------------hChHHHHHHhh
Confidence 455799999999999999999999999642 1133444444322 57888999997
Q ss_pred EEEE
Q 002353 678 VLCV 681 (932)
Q Consensus 678 li~~ 681 (932)
.+.+
T Consensus 166 ~~~~ 169 (325)
T PRK08699 166 KMVL 169 (325)
T ss_pred hhcC
Confidence 6655
No 271
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.18 E-value=0.16 Score=55.27 Aligned_cols=55 Identities=24% Similarity=0.467 Sum_probs=46.0
Q ss_pred CeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEE
Q 002353 601 GICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLC 680 (932)
Q Consensus 601 GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~ 680 (932)
.+++|-|.|++..+.|.+|...||.- ...|++|-.+|... .+-+|+-||+=++-
T Consensus 129 Kvvvi~ead~LT~dAQ~aLRRTMEkY-------------s~~~RlIl~cns~S-------------riIepIrSRCl~iR 182 (351)
T KOG2035|consen 129 KVVVINEADELTRDAQHALRRTMEKY-------------SSNCRLILVCNSTS-------------RIIEPIRSRCLFIR 182 (351)
T ss_pred EEEEEechHhhhHHHHHHHHHHHHHH-------------hcCceEEEEecCcc-------------cchhHHhhheeEEe
Confidence 58999999999999999999999943 34688999999865 78999999985444
Q ss_pred E
Q 002353 681 V 681 (932)
Q Consensus 681 ~ 681 (932)
+
T Consensus 183 v 183 (351)
T KOG2035|consen 183 V 183 (351)
T ss_pred C
Confidence 3
No 272
>PRK14700 recombination factor protein RarA; Provisional
Probab=96.05 E-value=0.063 Score=59.35 Aligned_cols=88 Identities=13% Similarity=0.055 Sum_probs=55.0
Q ss_pred CcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhhh--hhhhhch
Q 002353 754 PRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSFI--STQKFGV 831 (932)
Q Consensus 754 P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~~--~~~k~s~ 831 (932)
..+++++.+.|... ..+..|..-+++.++...+.-.-...||.+++.+++.--.-.+- ..+.+..
T Consensus 63 ~~i~~~al~~ia~~-------------a~GDaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~ 129 (300)
T PRK14700 63 FKIDDGLYNAMHNY-------------NEGDCRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQ 129 (300)
T ss_pred CCcCHHHHHHHHHh-------------cCCHHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHH
Confidence 46888898888875 23567888888877553221111123899998877643322221 2467888
Q ss_pred HHHHHHHHhhhhcchhhhHHHHHHHHHH
Q 002353 832 QKALQRSFRKYMTFKKEYNALLLDLLRE 859 (932)
Q Consensus 832 ~~~l~~~f~~~~~~~~~~~~~l~~~l~~ 859 (932)
..+++++.+ +.|.++.|+++-|=
T Consensus 130 iSAf~KSiR-----GSDpDAAlYyLArm 152 (300)
T PRK14700 130 LSAFHKSVR-----GTDPDAAIFWLSVM 152 (300)
T ss_pred HHHHHHHhh-----cCCccHHHHHHHHH
Confidence 889888876 55666666655443
No 273
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.01 E-value=0.0084 Score=67.98 Aligned_cols=57 Identities=12% Similarity=0.225 Sum_probs=44.0
Q ss_pred cCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccc-eEEEeeeCCCCCccCCCCCcccccCCChhhhccc
Q 002353 598 ADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQAR-CSVIAAANPVGGRYDSSKTFSENVELTDPIISRF 676 (932)
Q Consensus 598 Ad~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar-~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRF 676 (932)
+...|++||+.++|+....++|+..||+= +.+ +.|+.|.||. .|.+.+.||+
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~~~--------------~lLpTIrSRC 159 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEP-------------PENTWFFLACREPA--------------RLLATLRSRC 159 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECChh--------------hChHHHHhcc
Confidence 34569999999999999999999999952 122 3456666653 6899999999
Q ss_pred cEEEE
Q 002353 677 DVLCV 681 (932)
Q Consensus 677 Dli~~ 681 (932)
-.+.+
T Consensus 160 q~~~~ 164 (334)
T PRK07993 160 RLHYL 164 (334)
T ss_pred ccccC
Confidence 86644
No 274
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.96 E-value=0.0094 Score=62.93 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=24.5
Q ss_pred CCceEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
|..|.||+||||+|||+++|-+++.+.-
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~ 163 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSD 163 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhc
Confidence 4569999999999999999999998643
No 275
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.93 E-value=0.026 Score=63.53 Aligned_cols=118 Identities=19% Similarity=0.256 Sum_probs=68.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc---EEecCCCcccccccceeecC-----cc--cch------hhhcc---Cceec
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA---VYTTGKGASAVGLTAAVHKD-----PV--TRE------WTLEG---GALVL 597 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~---v~~~g~~ss~~gLta~v~kd-----~~--~g~------~~le~---Gal~l 597 (932)
-+||.|+.|+||+.+|+++++..-=. ...+|.-.+-.-+.++...| +. +.. ..+.. ..-..
T Consensus 27 A~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~ 106 (319)
T PRK06090 27 ALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESSQL 106 (319)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCccc
Confidence 68999999999999999999864210 01122111100000000000 00 000 00000 00112
Q ss_pred cCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccce-EEEeeeCCCCCccCCCCCcccccCCChhhhccc
Q 002353 598 ADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARC-SVIAAANPVGGRYDSSKTFSENVELTDPIISRF 676 (932)
Q Consensus 598 Ad~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~-sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRF 676 (932)
+..-|++||+.++|+....++|+..+|+= +.++ .|+.|.||. .|.+.+.||+
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~~~--------------~lLpTI~SRC 159 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEP-------------APNCLFLLVTHNQK--------------RLLPTIVSRC 159 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECChh--------------hChHHHHhcc
Confidence 33459999999999999999999999952 2233 445555553 6889999999
Q ss_pred cEEEE
Q 002353 677 DVLCV 681 (932)
Q Consensus 677 Dli~~ 681 (932)
-.+-+
T Consensus 160 q~~~~ 164 (319)
T PRK06090 160 QQWVV 164 (319)
T ss_pred eeEeC
Confidence 86665
No 276
>PF05729 NACHT: NACHT domain
Probab=95.88 E-value=0.0087 Score=59.44 Aligned_cols=22 Identities=27% Similarity=0.613 Sum_probs=19.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
-++|+|+||+|||++++.++..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 4799999999999999988765
No 277
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.76 E-value=0.022 Score=63.14 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=44.1
Q ss_pred CCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccc-eEEEeeeCCCCCccCCCCCcccccCCChhhhcccc
Q 002353 599 DRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQAR-CSVIAAANPVGGRYDSSKTFSENVELTDPIISRFD 677 (932)
Q Consensus 599 d~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar-~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFD 677 (932)
..-|++|++.++|+.+.+++|+..||.= +.. +.|+.|.|+. .+.++++||+-
T Consensus 95 ~~kv~ii~~ad~mt~~AaNaLLK~LEEP-------------p~~~~fiL~~~~~~--------------~ll~TI~SRcq 147 (290)
T PRK05917 95 PYKIYIIHEADRMTLDAISAFLKVLEDP-------------PQHGVIILTSAKPQ--------------RLPPTIRSRSL 147 (290)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhhcC-------------CCCeEEEEEeCChh--------------hCcHHHHhcce
Confidence 4469999999999999999999999952 122 3456666653 68899999998
Q ss_pred EEEE
Q 002353 678 VLCV 681 (932)
Q Consensus 678 li~~ 681 (932)
.+.+
T Consensus 148 ~~~~ 151 (290)
T PRK05917 148 SIHI 151 (290)
T ss_pred EEEc
Confidence 7766
No 278
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.30 E-value=0.013 Score=66.97 Aligned_cols=90 Identities=14% Similarity=0.230 Sum_probs=50.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC------CCcEEecCCCcccccccceeecCc---ccchhhhccCc---------eecc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG------QRAVYTTGKGASAVGLTAAVHKDP---VTREWTLEGGA---------LVLA 598 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~------~r~v~~~g~~ss~~gLta~v~kd~---~~g~~~le~Ga---------l~lA 598 (932)
-+++.|.||||||.||-.+++.+ ...++.++.......+...+.... ........+.. ....
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 82 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKEKN 82 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccccCC
Confidence 58999999999999999888876 234555554433222211111111 00000111111 1123
Q ss_pred CCCeeeeccccccCcc--------hhhhHHHHHhhc
Q 002353 599 DRGICLIDEFDKMNDQ--------DRVSIHEAMEQQ 626 (932)
Q Consensus 599 d~GIl~IDE~dkm~~~--------~~~~L~eamEqq 626 (932)
.-.++++||...|... ....|.+.|...
T Consensus 83 ~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~~ 118 (352)
T PF09848_consen 83 KYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKRA 118 (352)
T ss_pred cCCEEEEehhHhhhhccccccccccHHHHHHHHhcC
Confidence 4579999999999873 224566666643
No 279
>PHA02624 large T antigen; Provisional
Probab=95.28 E-value=0.035 Score=66.53 Aligned_cols=112 Identities=9% Similarity=0.114 Sum_probs=64.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCc---
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMND--- 613 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~--- 613 (932)
.+||+||||||||+|+.++.+.+...+... +++.. .-.|.+. +++|.-+.+||....-..
T Consensus 433 ~il~~GPpnTGKTtf~~sLl~~L~G~vlsV--NsPt~-----------ks~FwL~----pl~D~~~~l~dD~t~~~~~~~ 495 (647)
T PHA02624 433 YWLFKGPVNSGKTTLAAALLDLCGGKSLNV--NCPPD-----------KLNFELG----CAIDQFMVVFEDVKGQPADNK 495 (647)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEEe--eCCcc-----------hhHHHhh----hhhhceEEEeeeccccccccc
Confidence 799999999999999999999884332211 10000 0112222 245666777777742211
Q ss_pred ----ch----hhhHHHHHhhc-eeeeec---cceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEE
Q 002353 614 ----QD----RVSIHEAMEQQ-SISISK---AGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCV 681 (932)
Q Consensus 614 ----~~----~~~L~eamEqq-~isi~k---agi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~ 681 (932)
.. ..-|..+|+-. .|++.+ +-.....| ..|.|+|-. .||..+.-||-.++.
T Consensus 496 ~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~P---PlliT~Ney--------------~iP~T~~~Rf~~~~~ 558 (647)
T PHA02624 496 DLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFP---PGIVTMNEY--------------LIPQTVKARFAKVLD 558 (647)
T ss_pred cCCcccccchhhHHHhhcCCCCccccchhccCchhccCC---CeEEeecCc--------------ccchhHHHHHHHhcc
Confidence 11 13466666644 455532 22222222 567889863 578888889977766
Q ss_pred e
Q 002353 682 V 682 (932)
Q Consensus 682 l 682 (932)
+
T Consensus 559 F 559 (647)
T PHA02624 559 F 559 (647)
T ss_pred c
Confidence 5
No 280
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.23 E-value=0.011 Score=61.74 Aligned_cols=89 Identities=17% Similarity=0.247 Sum_probs=43.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC---CcEEec-CCCcccccccceeecCccc-chhhhc-c-----CceeccCCCeeee
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ---RAVYTT-GKGASAVGLTAAVHKDPVT-REWTLE-G-----GALVLADRGICLI 605 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~---r~v~~~-g~~ss~~gLta~v~kd~~~-g~~~le-~-----Gal~lAd~GIl~I 605 (932)
-++|.|+||||||++++.+.+... ..+... ..+.....|.........| ..+... . +.......-+++|
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliV 99 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIV 99 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEE
Confidence 477789999999999998876532 222221 1111111111000000000 000000 0 0111344569999
Q ss_pred ccccccCcchhhhHHHHHhh
Q 002353 606 DEFDKMNDQDRVSIHEAMEQ 625 (932)
Q Consensus 606 DE~dkm~~~~~~~L~eamEq 625 (932)
||...++......|+.....
T Consensus 100 DEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 100 DEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp SSGGG-BHHHHHHHHHHS-T
T ss_pred ecccccCHHHHHHHHHHHHh
Confidence 99999998776666666553
No 281
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.23 E-value=0.025 Score=60.01 Aligned_cols=76 Identities=21% Similarity=0.187 Sum_probs=39.6
Q ss_pred EEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceec---cCCCeeeeccccccCcc
Q 002353 538 VLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVL---ADRGICLIDEFDKMNDQ 614 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~l---Ad~GIl~IDE~dkm~~~ 614 (932)
+++.|.||+|||++++.+.... .+++. ...+....+...........+++....... ....+++|||+..++..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~s~~~~~~~~~~~~~liiDE~~~~~~g 77 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR--LVVTV-ISPTIELYTEWLPDPPSKSVRTVDSFLKALVKPKSYDTLIIDEAQLLPPG 77 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc--ccccc-ccccceeccccccccCCccccEEeEhhhcccccCcCCEEEEeccccCChH
Confidence 4789999999999999888773 11111 111111111111111111112222211111 23569999999999875
Q ss_pred hh
Q 002353 615 DR 616 (932)
Q Consensus 615 ~~ 616 (932)
..
T Consensus 78 ~l 79 (234)
T PF01443_consen 78 YL 79 (234)
T ss_pred HH
Confidence 44
No 282
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.026 Score=67.72 Aligned_cols=139 Identities=16% Similarity=0.223 Sum_probs=73.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe-----cCCCcccccccceeecCcccchhhhccCceeccCCCeeeecccccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT-----TGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKM 611 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~-----~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm 611 (932)
||||.|++|+|||.|++++.+......+. .+....... +....+. -..|..++ +-. .-.|+++|.+|-+
T Consensus 433 ~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~-~e~iQk~--l~~vfse~--~~~-~PSiIvLDdld~l 506 (952)
T KOG0735|consen 433 NILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS-LEKIQKF--LNNVFSEA--LWY-APSIIVLDDLDCL 506 (952)
T ss_pred cEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh-HHHHHHH--HHHHHHHH--Hhh-CCcEEEEcchhhh
Confidence 99999999999999999999876543211 111000000 1111110 00111110 111 2268899999877
Q ss_pred Ccc-----hh----h-hHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEE
Q 002353 612 NDQ-----DR----V-SIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVL 679 (932)
Q Consensus 612 ~~~-----~~----~-~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli 679 (932)
-.. .| . .|-.++.| .|- +..+.+..+.+||+.+... .|++-|.| +|+.+
T Consensus 507 ~~~s~~e~~q~~~~~~rla~flnq-vi~-----~y~~~~~~ia~Iat~qe~q-------------tl~~~L~s~~~Fq~~ 567 (952)
T KOG0735|consen 507 ASASSNENGQDGVVSERLAAFLNQ-VIK-----IYLKRNRKIAVIATGQELQ-------------TLNPLLVSPLLFQIV 567 (952)
T ss_pred hccCcccCCcchHHHHHHHHHHHH-HHH-----HHHccCcEEEEEEechhhh-------------hcChhhcCccceEEE
Confidence 441 11 1 12222222 111 1234466689999998643 23333322 89988
Q ss_pred EEecCCCChhHhHHHHHHHHhh
Q 002353 680 CVVKDVVDPVVDEMLAKFVIDS 701 (932)
Q Consensus 680 ~~l~D~~d~~~D~~La~~vl~~ 701 (932)
..+ ..|+.....+|.++++..
T Consensus 568 ~~L-~ap~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 568 IAL-PAPAVTRRKEILTTIFSK 588 (952)
T ss_pred Eec-CCcchhHHHHHHHHHHHh
Confidence 887 445566666777777654
No 283
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=95.18 E-value=0.074 Score=49.33 Aligned_cols=64 Identities=20% Similarity=0.353 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHH
Q 002353 735 ILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNM 814 (932)
Q Consensus 735 ~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~ 814 (932)
.++...|++|+. |++++...|...+. ...+|.|....|+|+|...|.|..++.|+.+||.+
T Consensus 31 ~l~~~~l~~~~~---------l~~~~~~~l~~~~~----------~~~lS~R~~~rilrvARTIADL~~~~~I~~~hi~E 91 (96)
T PF13335_consen 31 QLPGEELRKYCP---------LSSEAKKLLEQAAE----------KLNLSARGYHRILRVARTIADLEGSERITREHIAE 91 (96)
T ss_pred cCCHHHHHhHcC---------CCHHHHHHHHHHHH----------HcCcCHHHHHHHHHHHHHHHhHcCCCCCCHHHHHH
Confidence 468888887743 56778888888765 45689999999999999999999999999999999
Q ss_pred HHH
Q 002353 815 AIR 817 (932)
Q Consensus 815 AI~ 817 (932)
|+.
T Consensus 92 Al~ 94 (96)
T PF13335_consen 92 ALS 94 (96)
T ss_pred HHh
Confidence 975
No 284
>PRK13695 putative NTPase; Provisional
Probab=95.17 E-value=0.042 Score=56.08 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=19.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
+++|+|+||+|||+|++.++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999987654
No 285
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.16 E-value=0.017 Score=56.41 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=21.3
Q ss_pred EEEeCCCCchHHHHHHHHHHhCC
Q 002353 538 VLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~~~~ 560 (932)
|+++|+||+|||++++.+++..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999998776
No 286
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.07 E-value=0.018 Score=54.70 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.1
Q ss_pred EEEeCCCCchHHHHHHHHHHhCC
Q 002353 538 VLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~~~~ 560 (932)
|+|+|+||+|||++++.+++...
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78999999999999999999764
No 287
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.03 E-value=0.037 Score=67.34 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=28.6
Q ss_pred hHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHh
Q 002353 507 HEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 507 ~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.+.-|.|+.+++-+. .++|.|.||||||+++..+...
T Consensus 147 ~~~Qk~A~~~al~~~---------------~~vitGgpGTGKTt~v~~ll~~ 183 (586)
T TIGR01447 147 QNWQKVAVALALKSN---------------FSLITGGPGTGKTTTVARLLLA 183 (586)
T ss_pred cHHHHHHHHHHhhCC---------------eEEEEcCCCCCHHHHHHHHHHH
Confidence 355677888877765 7899999999999987766543
No 288
>PF13173 AAA_14: AAA domain
Probab=95.03 E-value=0.036 Score=53.71 Aligned_cols=79 Identities=23% Similarity=0.286 Sum_probs=43.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC---CcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ---RAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMND 613 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~---r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~ 613 (932)
.++|.|+.|+|||++++.+++... ..+|..........+. ....-.+..+. ......++||||++.++.
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~i~iDEiq~~~~ 75 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA-----DPDLLEYFLEL---IKPGKKYIFIDEIQYLPD 75 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh-----hhhhHHHHHHh---hccCCcEEEEehhhhhcc
Confidence 689999999999999998886543 2333322111111100 00000111110 111457899999999974
Q ss_pred chhhhHHHHHh
Q 002353 614 QDRVSIHEAME 624 (932)
Q Consensus 614 ~~~~~L~eamE 624 (932)
-...+....+
T Consensus 76 -~~~~lk~l~d 85 (128)
T PF13173_consen 76 -WEDALKFLVD 85 (128)
T ss_pred -HHHHHHHHHH
Confidence 3444555554
No 289
>PRK14532 adenylate kinase; Provisional
Probab=94.96 E-value=0.025 Score=58.34 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=25.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEec
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTT 566 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~ 566 (932)
+|+|+|+||+|||++++.+++..+...+.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 799999999999999999999876554443
No 290
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.92 E-value=0.35 Score=58.04 Aligned_cols=90 Identities=19% Similarity=0.238 Sum_probs=50.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcc-------cccccce-------eecCcccchhhhccCc---e----
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGAS-------AVGLTAA-------VHKDPVTREWTLEGGA---L---- 595 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss-------~~gLta~-------v~kd~~~g~~~le~Ga---l---- 595 (932)
-+||.||||+|||+.++.+++.+.-.+........ ..+.... ..+-..-++|.+.+.. +
T Consensus 47 iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g 126 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSG 126 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhccccccccccccccccC
Confidence 68899999999999999999987554432111100 0000000 0000011122222111 1
Q ss_pred --eccCCCeeeeccccccCcchhhhHHHHHhhc
Q 002353 596 --VLADRGICLIDEFDKMNDQDRVSIHEAMEQQ 626 (932)
Q Consensus 596 --~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq 626 (932)
...++-|++|+|+-.+.......++++|.+-
T Consensus 127 ~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~ 159 (519)
T PF03215_consen 127 SNSSSNKKVILVEDLPNVFHRDTSRFREALRQY 159 (519)
T ss_pred CCcCCCceEEEeeccccccchhHHHHHHHHHHH
Confidence 1234569999999887666667888888753
No 291
>PRK13947 shikimate kinase; Provisional
Probab=94.84 E-value=0.028 Score=56.84 Aligned_cols=30 Identities=33% Similarity=0.308 Sum_probs=27.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEec
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTT 566 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~ 566 (932)
||+|+|.||+|||++++.+++.+...++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~ 32 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDT 32 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 799999999999999999999987776654
No 292
>PHA00729 NTP-binding motif containing protein
Probab=94.80 E-value=0.021 Score=61.01 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=21.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
+++|+|+||||||+||..+++.+
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999865
No 293
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.78 E-value=0.049 Score=62.58 Aligned_cols=88 Identities=17% Similarity=0.134 Sum_probs=48.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc---EEecCCCccccccc-ceeecC--------cccch-hhhc---cCceeccCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA---VYTTGKGASAVGLT-AAVHKD--------PVTRE-WTLE---GGALVLADR 600 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~---v~~~g~~ss~~gLt-a~v~kd--------~~~g~-~~le---~Gal~lAd~ 600 (932)
++.+.|+.|||||.+++++...+... +..++....++-+. ++.+-. ..... .... .-.-.+..-
T Consensus 24 ~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (364)
T PF05970_consen 24 NFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPINNNEKSQCKISKNSRLRERLRKA 103 (364)
T ss_pred EEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCccccccccccccccccchhhhhhhhh
Confidence 89999999999999999998776432 33322111111111 111100 00000 0000 001122333
Q ss_pred CeeeeccccccCcchhhhHHHHHh
Q 002353 601 GICLIDEFDKMNDQDRVSIHEAME 624 (932)
Q Consensus 601 GIl~IDE~dkm~~~~~~~L~eamE 624 (932)
.+++|||+..++......+...|.
T Consensus 104 ~~lIiDEism~~~~~l~~i~~~lr 127 (364)
T PF05970_consen 104 DVLIIDEISMVSADMLDAIDRRLR 127 (364)
T ss_pred eeeecccccchhHHHHHHHHHhhh
Confidence 689999999998877766666655
No 294
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=94.69 E-value=0.071 Score=60.63 Aligned_cols=95 Identities=22% Similarity=0.218 Sum_probs=57.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcchh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDR 616 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~ 616 (932)
-++|+|||+||||+++-.+.+.+...|.+--+ . ...|-+. .+++..|.+||+...---+-.
T Consensus 264 Clvi~GPPdTGKS~F~~SLi~Fl~GkViSf~N-----------s----~ShFWLq----PL~d~Ki~llDDAT~~cW~Y~ 324 (432)
T PF00519_consen 264 CLVIYGPPDTGKSMFCMSLIKFLKGKVISFVN-----------S----KSHFWLQ----PLADAKIALLDDATYPCWDYI 324 (432)
T ss_dssp EEEEESSCCCSHHHHHHHHHHHHTSEEE-GGG-----------T----TSCGGGG----GGCT-SSEEEEEE-HHHHHHH
T ss_pred EEEEECCCCCchhHHHHHHHHHhCCEEEEecC-----------C----CCccccc----chhcCcEEEEcCCcccHHHHH
Confidence 68999999999999999998887544432100 0 1123333 367778999999865333322
Q ss_pred -hhHHHHHhhceeeee---ccceeEeeccceEEEeeeCCCC
Q 002353 617 -VSIHEAMEQQSISIS---KAGIVTSLQARCSVIAAANPVG 653 (932)
Q Consensus 617 -~~L~eamEqq~isi~---kagi~~~l~ar~sIIAAaNp~~ 653 (932)
+-|..+|+-..|+|- |+-+....| .+|.|+|...
T Consensus 325 D~ylRNaLDGN~vsiD~KHkap~Qik~P---PLlITsN~dv 362 (432)
T PF00519_consen 325 DTYLRNALDGNPVSIDCKHKAPVQIKCP---PLLITSNIDV 362 (432)
T ss_dssp HHHTHHHHCTSEEEEEESSSEEEEEE------EEEEESS-T
T ss_pred HHHHHhccCCCeeeeeccCCCceEeecC---ceEEecCCCC
Confidence 346778888888883 333333333 5778998754
No 295
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.67 E-value=0.029 Score=55.62 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=25.6
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
.|||++|-||||||+++..++....-..+.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~ 37 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIE 37 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEe
Confidence 499999999999999999999887655443
No 296
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.46 Score=53.92 Aligned_cols=134 Identities=20% Similarity=0.234 Sum_probs=79.8
Q ss_pred hhhHHHHHHhhc--ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecC
Q 002353 490 PRIGERIIKSIA--PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTG 567 (932)
Q Consensus 490 ~~i~~~l~~sia--p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g 567 (932)
..+.+.|++||. |..|... .|--++.-|+.- +-++.|++=.||.+||||++-|-+ +|.....+|
T Consensus 189 deWidVLirsiGmePa~~e~r-tkwhll~Rlvpl----------VEnNyN~cElGPr~TGKshvYkev---Spn~~liSG 254 (683)
T COG4930 189 DEWIDVLIRSIGMEPAVYEPR-TKWHLLARLVPL----------VENNYNMCELGPRQTGKSHVYKEV---SPNVRLISG 254 (683)
T ss_pred HHHHHHHHHhcCCCccccChh-hhHHHHHHHHHH----------hhCCcchhhcCCCccCccceehcc---CCceEEeeC
Confidence 345667777754 5555432 233333333322 123449999999999999997754 577777777
Q ss_pred CCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcch---hhhHHHHHhhceeeeeccceeEeeccceE
Q 002353 568 KGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQD---RVSIHEAMEQQSISISKAGIVTSLQARCS 644 (932)
Q Consensus 568 ~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~---~~~L~eamEqq~isi~kagi~~~l~ar~s 644 (932)
..++.+.|.-.+. +-.+|.+-+- -++.+||...+.-.+ ...|...|+.|.. ++.. ....++.+
T Consensus 255 GqttvAnLFYNma--------trqiGlvg~w--DvVaFDEVagirFkdkDg~qilKDYMaSGsf--~RG~--~~v~~~AS 320 (683)
T COG4930 255 GQTTVANLFYNMA--------TRQIGLVGLW--DVVAFDEVAGIRFKDKDGMQILKDYMASGSF--ERGD--KKVVSDAS 320 (683)
T ss_pred CcccHHHHHHHHh--------hccccceeee--eeeeehhhccccccCccHHHHHHHHHhcCCc--cccc--ccccccce
Confidence 7777666654332 2234444332 378889998764333 3467788888874 3333 34455566
Q ss_pred EEeeeCC
Q 002353 645 VIAAANP 651 (932)
Q Consensus 645 IIAAaNp 651 (932)
++.-.|-
T Consensus 321 lVFvGNv 327 (683)
T COG4930 321 LVFVGNV 327 (683)
T ss_pred EEEEecc
Confidence 6665554
No 297
>PRK10536 hypothetical protein; Provisional
Probab=94.56 E-value=0.081 Score=57.57 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=19.7
Q ss_pred eEEEeCCCCchHHHHHHHHHH
Q 002353 537 NVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~ 557 (932)
.|+++|++|||||.|+.+++.
T Consensus 76 lV~i~G~aGTGKT~La~a~a~ 96 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAA 96 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999998877
No 298
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.52 E-value=0.036 Score=55.82 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=25.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
+|+|+|+||+|||++++.+++.++..++.
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l~~~~~d 34 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRLGYDFID 34 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 89999999999999999999987655543
No 299
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.49 E-value=0.065 Score=65.47 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=30.0
Q ss_pred hHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHh
Q 002353 507 HEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 507 ~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.+.-|.|+.+++.++ -++|.|+||||||++++.+...
T Consensus 154 ~d~Qk~Av~~a~~~~---------------~~vItGgpGTGKTt~v~~ll~~ 190 (615)
T PRK10875 154 VDWQKVAAAVALTRR---------------ISVISGGPGTGKTTTVAKLLAA 190 (615)
T ss_pred CHHHHHHHHHHhcCC---------------eEEEEeCCCCCHHHHHHHHHHH
Confidence 467888988888765 6899999999999988766543
No 300
>PRK03839 putative kinase; Provisional
Probab=94.47 E-value=0.036 Score=56.83 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=25.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEec
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTT 566 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~ 566 (932)
.|+|+|.||+|||++++.+++.....+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~ 31 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDL 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 589999999999999999999876655443
No 301
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.46 E-value=0.045 Score=55.55 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=18.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
+++|+|++|+|||.|++.+...+.
T Consensus 26 ~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 26 NLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp -EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999997776543
No 302
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.45 E-value=0.038 Score=54.66 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=24.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
+|+|+|+||+|||++++.+++.++..++.
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~ 29 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVD 29 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 58999999999999999999887655443
No 303
>PRK08118 topology modulation protein; Reviewed
Probab=94.36 E-value=0.039 Score=56.30 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=23.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
.|+++|+||+|||+|++.+++...-.++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~ 30 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVH 30 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCce
Confidence 5899999999999999999988755433
No 304
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.34 E-value=0.048 Score=68.29 Aligned_cols=88 Identities=24% Similarity=0.326 Sum_probs=47.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC---cEEecCC-CcccccccceeecCccc-chhh--hccCceeccCCCeeeecccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR---AVYTTGK-GASAVGLTAAVHKDPVT-REWT--LEGGALVLADRGICLIDEFD 609 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r---~v~~~g~-~ss~~gLta~v~kd~~~-g~~~--le~Gal~lAd~GIl~IDE~d 609 (932)
-++|.|.||||||++++.+...+.. .+..... +..+..|.........| ..|. ...+.-.+...-+++|||+.
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEas 449 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEAG 449 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECcc
Confidence 5789999999999999998765432 2222111 11111111000000000 0111 12233334566799999999
Q ss_pred ccCcchhhhHHHHHh
Q 002353 610 KMNDQDRVSIHEAME 624 (932)
Q Consensus 610 km~~~~~~~L~eamE 624 (932)
.++......|+....
T Consensus 450 Mv~~~~~~~Ll~~~~ 464 (744)
T TIGR02768 450 MVGSRQMARVLKEAE 464 (744)
T ss_pred cCCHHHHHHHHHHHH
Confidence 999877666665443
No 305
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.32 E-value=0.037 Score=57.11 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=23.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA 562 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~ 562 (932)
.|+|+|+||+|||++|+.+++..+-.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~ 27 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLP 27 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 68999999999999999999986544
No 306
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.32 E-value=0.16 Score=56.77 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=66.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE-ecCCCccccccccee-ecCccc-chh-h----hccCceeccCCCeeeeccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY-TTGKGASAVGLTAAV-HKDPVT-REW-T----LEGGALVLADRGICLIDEF 608 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~-~~g~~ss~~gLta~v-~kd~~~-g~~-~----le~Gal~lAd~GIl~IDE~ 608 (932)
-.||+|+.|+||+++++.+++..--..- ....+.....+...- .....+ .+. . +.-.++..++.-|++||+.
T Consensus 20 aYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~ 99 (299)
T PRK07132 20 SFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKILIIKNI 99 (299)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCceEEEEecc
Confidence 4569999999999999999887510000 000000000000000 000000 000 0 0001111236679999999
Q ss_pred cccCcchhhhHHHHHhhceeeeeccceeEeeccceEEE-eeeCCCCCccCCCCCcccccCCChhhhccccEEEE
Q 002353 609 DKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVI-AAANPVGGRYDSSKTFSENVELTDPIISRFDVLCV 681 (932)
Q Consensus 609 dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sII-AAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~ 681 (932)
++|+...+++|+..||.= |..+.+| .+.|+ . .+.+++.||+-.+-+
T Consensus 100 e~m~~~a~NaLLK~LEEP-------------p~~t~~il~~~~~-~-------------kll~TI~SRc~~~~f 146 (299)
T PRK07132 100 EKTSNSLLNALLKTIEEP-------------PKDTYFLLTTKNI-N-------------KVLPTIVSRCQVFNV 146 (299)
T ss_pred cccCHHHHHHHHHHhhCC-------------CCCeEEEEEeCCh-H-------------hChHHHHhCeEEEEC
Confidence 999999999999999952 2334444 44454 2 678899999987665
No 307
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.24 E-value=0.053 Score=56.83 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=16.5
Q ss_pred EEEeCCCCchHHHHHHHHHHhC
Q 002353 538 VLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~~~ 559 (932)
.++.||||||||+++..+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998766555443
No 308
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.22 E-value=0.056 Score=67.51 Aligned_cols=88 Identities=22% Similarity=0.233 Sum_probs=45.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC-----CcEEecC-CCcccccccceeecCcccchhhh--ccCcee------ccCCCe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ-----RAVYTTG-KGASAVGLTAAVHKDPVTREWTL--EGGALV------LADRGI 602 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~-----r~v~~~g-~~ss~~gLta~v~kd~~~g~~~l--e~Gal~------lAd~GI 602 (932)
.++|.|.||||||++++.+...+. ..+.... .+..+..|.........|-.-.+ .++... .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 699999999999999998877543 2233211 11111111100000000100001 111110 124579
Q ss_pred eeeccccccCcchhhhHHHHHh
Q 002353 603 CLIDEFDKMNDQDRVSIHEAME 624 (932)
Q Consensus 603 l~IDE~dkm~~~~~~~L~eamE 624 (932)
++|||...++......|+.++.
T Consensus 420 lIvDEaSMvd~~~~~~Ll~~~~ 441 (720)
T TIGR01448 420 LIVDESSMMDTWLALSLLAALP 441 (720)
T ss_pred EEEeccccCCHHHHHHHHHhCC
Confidence 9999999998776666666543
No 309
>PRK00625 shikimate kinase; Provisional
Probab=94.19 E-value=0.045 Score=56.23 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=25.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
||+|+|.||+|||++++.+++.+...++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id 30 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFD 30 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 79999999999999999999987665544
No 310
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.18 E-value=0.048 Score=55.84 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.0
Q ss_pred EEEeCCCCchHHHHHHHHHHhCCCc
Q 002353 538 VLLLGDPGTAKSQFLKYVEKTGQRA 562 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~~~~r~ 562 (932)
|+|+|+||+|||++++.+++..+-.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~ 26 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT 26 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe
Confidence 7899999999999999999876543
No 311
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.11 E-value=0.035 Score=52.74 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=20.6
Q ss_pred EEEeCCCCchHHHHHHHHHHhC
Q 002353 538 VLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~~~ 559 (932)
|+|.|.||+|||++++.+++..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999875
No 312
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.07 E-value=0.059 Score=57.91 Aligned_cols=32 Identities=25% Similarity=0.540 Sum_probs=27.1
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCcEEecC
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRAVYTTG 567 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~v~~~g 567 (932)
..|+|+|+||+|||++++.+++........+|
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 47999999999999999999998766655544
No 313
>PRK14530 adenylate kinase; Provisional
Probab=94.03 E-value=0.051 Score=57.55 Aligned_cols=30 Identities=30% Similarity=0.348 Sum_probs=25.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEec
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTT 566 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~ 566 (932)
+|+|+|+||+|||++++.+++..+-..+.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 799999999999999999999876544433
No 314
>PRK13949 shikimate kinase; Provisional
Probab=93.89 E-value=0.059 Score=55.07 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=25.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
+|+|+|+||+|||++++.+++.+...++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id 31 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFID 31 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeec
Confidence 79999999999999999999988655443
No 315
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.78 E-value=0.063 Score=55.32 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=23.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
+|+|+|+||+|||++++.+++...-..+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i 28 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHI 28 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 4899999999999999999987644433
No 316
>PRK07261 topology modulation protein; Provisional
Probab=93.76 E-value=0.068 Score=54.66 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=21.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.|+|+|+||+|||+|++.++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987653
No 317
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=93.61 E-value=0.12 Score=56.27 Aligned_cols=118 Identities=18% Similarity=0.223 Sum_probs=67.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC--CcEEecCCCcccccccceeecC---------ccc-chh-hh----ccCceeccC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ--RAVYTTGKGASAVGLTAAVHKD---------PVT-REW-TL----EGGALVLAD 599 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~--r~v~~~g~~ss~~gLta~v~kd---------~~~-g~~-~l----e~Gal~lAd 599 (932)
-.||+|++|+||..+|.++++..- ...-.+|.-.+-.-+..+...| +.. .+. .+ ...++..+.
T Consensus 9 A~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~~~ 88 (261)
T PRK05818 9 PLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVESNG 88 (261)
T ss_pred ceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchhcCC
Confidence 789999999999999998887531 1111122211111000000000 000 000 00 001111123
Q ss_pred CCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccce-EEEeeeCCCCCccCCCCCcccccCCChhhhccccE
Q 002353 600 RGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARC-SVIAAANPVGGRYDSSKTFSENVELTDPIISRFDV 678 (932)
Q Consensus 600 ~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~-sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDl 678 (932)
.-|++|+++++|+....++|+..+|+= +.++ .|+.|.|+. .+.+.+.||+-.
T Consensus 89 ~KV~II~~ae~m~~~AaNaLLK~LEEP-------------p~~t~fiLit~~~~--------------~lLpTI~SRCq~ 141 (261)
T PRK05818 89 KKIYIIYGIEKLNKQSANSLLKLIEEP-------------PKNTYGIFTTRNEN--------------NILNTILSRCVQ 141 (261)
T ss_pred CEEEEeccHhhhCHHHHHHHHHhhcCC-------------CCCeEEEEEECChH--------------hCchHhhhheee
Confidence 469999999999999999999999952 2223 445555553 789999999876
Q ss_pred EEE
Q 002353 679 LCV 681 (932)
Q Consensus 679 i~~ 681 (932)
+.+
T Consensus 142 ~~~ 144 (261)
T PRK05818 142 YVV 144 (261)
T ss_pred eec
Confidence 554
No 318
>PRK04296 thymidine kinase; Provisional
Probab=93.58 E-value=0.11 Score=54.06 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=17.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
-+|++|+||+|||++|..++..
T Consensus 4 i~litG~~GsGKTT~~l~~~~~ 25 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYN 25 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHH
Confidence 4688999999999777655443
No 319
>PRK12608 transcription termination factor Rho; Provisional
Probab=93.54 E-value=0.094 Score=60.00 Aligned_cols=113 Identities=19% Similarity=0.314 Sum_probs=63.8
Q ss_pred CCCCCeEEEEEEeccccc--cCCCCCeEEEEEEEeecccCcCCcCCCcceEEEEEEEecccccc----ccc-cccccCHH
Q 002353 406 AGRLPRYKEVILLNDLID--CARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANHITKKH----DLF-SAYKLTQE 478 (932)
Q Consensus 406 ~G~~Pr~i~V~L~~dLvd--~~~pGd~V~ItGI~~~~~~~~~~~k~~~~vf~~~i~an~I~~~~----~~~-~~~~lt~~ 478 (932)
.+.+|..-+|++...+|. .+++||.|.-+|-. ..+.....-++.+|..-... ..+ ....+...
T Consensus 38 ~~~~~~~~d~yv~~~~i~~~~l~~Gd~V~~~~r~----------~~~~~~LgrV~~~~G~p~d~~~~~~~~~~~~pi~p~ 107 (380)
T PRK12608 38 RNYLPSPDDVFVPPALIRRFNLRTGDVVEGVARP----------RERYRVLVRVDSVNGTDPEKLARRPHFDDLTPLHPR 107 (380)
T ss_pred cCCCCCCCCeeeCHHHHHHhCCCCCCEEEeccCC----------CCChhheEEEeccCCcCchhcccccCcCcCCCCCcc
Confidence 356677778898888885 58999998776633 12223334444444432110 001 01112222
Q ss_pred HHHHHHHHhcChhhHHHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHh
Q 002353 479 DKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 479 d~~~i~~l~~~~~i~~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~ 558 (932)
+...|.. .-+.+..++++.++|- | .|. .+||+|+||||||+|++.+++.
T Consensus 108 ~R~~ie~--~~~~~~~RvID~l~Pi----------------G-------kGQ------R~LIvG~pGtGKTTLl~~la~~ 156 (380)
T PRK12608 108 ERLRLET--GSDDLSMRVVDLVAPI----------------G-------KGQ------RGLIVAPPRAGKTVLLQQIAAA 156 (380)
T ss_pred ccccccc--cCcchhHhhhhheeec----------------C-------CCc------eEEEECCCCCCHHHHHHHHHHH
Confidence 2222221 1134555666666661 1 122 7899999999999999998775
Q ss_pred C
Q 002353 559 G 559 (932)
Q Consensus 559 ~ 559 (932)
.
T Consensus 157 i 157 (380)
T PRK12608 157 V 157 (380)
T ss_pred H
Confidence 4
No 320
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=93.52 E-value=0.48 Score=51.24 Aligned_cols=190 Identities=14% Similarity=0.119 Sum_probs=101.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcE----EecCCCcccccccceeecCccc-chhhhc-------cCceecc---CC-
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAV----YTTGKGASAVGLTAAVHKDPVT-REWTLE-------GGALVLA---DR- 600 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v----~~~g~~ss~~gLta~v~kd~~~-g~~~le-------~Gal~lA---d~- 600 (932)
-+.++|+-|+|||.+.|++....+..- +......+..++..++..+-.+ ..|.+. -+...+. ..
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 689999999999999997777665442 2232333333322221111000 011111 1111111 22
Q ss_pred CeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCCh----hhhccc
Q 002353 601 GICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTD----PIISRF 676 (932)
Q Consensus 601 GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~----~LLsRF 676 (932)
-++++||...+..+....|.-.++--. . .....+|+-..-|.... .+-. .+-.|+
T Consensus 133 v~l~vdEah~L~~~~le~Lrll~nl~~-----~-----~~~~l~ivL~Gqp~L~~-----------~lr~~~l~e~~~R~ 191 (269)
T COG3267 133 VVLMVDEAHDLNDSALEALRLLTNLEE-----D-----SSKLLSIVLIGQPKLRP-----------RLRLPVLRELEQRI 191 (269)
T ss_pred eEEeehhHhhhChhHHHHHHHHHhhcc-----c-----ccCceeeeecCCcccch-----------hhchHHHHhhhheE
Confidence 479999999999887777665554211 0 01124555555553210 1111 223366
Q ss_pred cEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH----HHhhcC
Q 002353 677 DVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT----YAKLNV 752 (932)
Q Consensus 677 Dli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~----yar~~~ 752 (932)
++-|.+. ++++.....|+. -|- ..
T Consensus 192 ~ir~~l~---------------------------------------------------P~~~~~t~~yl~~~Le~a~-~~ 219 (269)
T COG3267 192 DIRIELP---------------------------------------------------PLTEAETGLYLRHRLEGAG-LP 219 (269)
T ss_pred EEEEecC---------------------------------------------------CcChHHHHHHHHHHHhccC-CC
Confidence 6654441 122222333333 332 24
Q ss_pred CCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHH
Q 002353 753 FPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDV 812 (932)
Q Consensus 753 ~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv 812 (932)
.|.+++++...|... ..+.+|.+..+..+|.-.|-.-.+..|+...+
T Consensus 220 ~~l~~~~a~~~i~~~-------------sqg~P~lin~~~~~Al~~a~~a~~~~v~~a~~ 266 (269)
T COG3267 220 EPLFSDDALLLIHEA-------------SQGIPRLINNLATLALDAAYSAGEDGVSEAEI 266 (269)
T ss_pred cccCChhHHHHHHHH-------------hccchHHHHHHHHHHHHHHHHcCCCccchhhc
Confidence 567888888777653 12357888888888888887777888776654
No 321
>PRK14531 adenylate kinase; Provisional
Probab=93.50 E-value=0.075 Score=54.83 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=23.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
.|+++|+||+|||++++.+++...-..+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~i 31 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHL 31 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence 6999999999999999999988654433
No 322
>PRK06217 hypothetical protein; Validated
Probab=93.32 E-value=0.09 Score=54.18 Aligned_cols=28 Identities=7% Similarity=0.122 Sum_probs=24.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
+|+|+|.||+|||++++.+++.+...++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~ 30 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHL 30 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 6999999999999999999998765544
No 323
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.31 E-value=0.077 Score=52.50 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.2
Q ss_pred EEEeCCCCchHHHHHHHHHHhCCC
Q 002353 538 VLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~~~~r 561 (932)
++|+|+||+|||++++.+++....
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~ 25 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGA 25 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCC
Confidence 689999999999999999987543
No 324
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.15 E-value=0.072 Score=54.50 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=22.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA 562 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~ 562 (932)
-|+++|+||+|||++++.+++...-.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~ 30 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFT 30 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 58899999999999999999775433
No 325
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.13 E-value=0.1 Score=53.41 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=25.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEec
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTT 566 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~ 566 (932)
+|+|+|++|+|||++++.+++.+...++.+
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l~~~~vd~ 35 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 35 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHcCCcEEEC
Confidence 899999999999999999999876655543
No 326
>PRK14528 adenylate kinase; Provisional
Probab=93.13 E-value=0.092 Score=54.44 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=24.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
+++++|+||+|||++++.+++......+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 68999999999999999999876544443
No 327
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.13 E-value=0.078 Score=53.30 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.3
Q ss_pred EEEeCCCCchHHHHHHHHHHhCCC
Q 002353 538 VLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~~~~r 561 (932)
++|+|+||+|||++++.+++.++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~ 24 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGA 24 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCC
Confidence 478999999999999999998753
No 328
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=93.08 E-value=0.23 Score=66.52 Aligned_cols=152 Identities=16% Similarity=0.220 Sum_probs=85.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC-CCcEEe-cCCCcccccccceeecCcccchhhhccCceecc--CCCeeeeccccccC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG-QRAVYT-TGKGASAVGLTAAVHKDPVTREWTLEGGALVLA--DRGICLIDEFDKMN 612 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~-~r~v~~-~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lA--d~GIl~IDE~dkm~ 612 (932)
.++++|++|||||.+........ ++.++. +....+...++..+.... . -...+|...-. ..=++|+||++.-.
T Consensus 129 ~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~~~fs~~ts~~~~q~~~~~~-~--~k~~~~~~~~~~~~~~~~f~ddinmp~ 205 (1395)
T KOG3595|consen 129 PVLLVGPTGTGKTVLVLSELRSLQDREVYLLNFSSVTSSELLQEIIESK-L--DKRRSGNYGPPLGKKLVLFVDDINMPA 205 (1395)
T ss_pred eEEEEcCCCCCeeeehHHHHHhcccchheEEeeeeeccHHHHHHHHHHH-H--HHhcccCCCCCCCceeEEEEeccCCch
Confidence 89999999999999888666543 333222 111111111110000000 0 00011111111 12389999998422
Q ss_pred cc------hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCC-CccCCCCCcccccCCChhhhccccEEEEecCC
Q 002353 613 DQ------DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVG-GRYDSSKTFSENVELTDPIISRFDVLCVVKDV 685 (932)
Q Consensus 613 ~~------~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~-Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~ 685 (932)
.+ ....+++.++.+...-... ..-..--++.+++|+||.+ |++ .+++-+++.|-++.. +.
T Consensus 206 ~~~yg~q~~~~~lrq~~e~~g~~~~~~-~~~~~i~~i~~~~a~~~~~~gr~----------~i~~r~~r~f~~~~~--~~ 272 (1395)
T KOG3595|consen 206 LDKYGDQPPIELLRQMLEHGGFYDRKK-SEWVEIENVQLVGAMNPPGGGRN----------DITERFLRHFLIVSL--NY 272 (1395)
T ss_pred hhhcCCccHHHHHHHHHHhceeecccc-cceeEEeeeEEEeecCCCCCccC----------cccHHHHHHeeeEee--CC
Confidence 11 2356777777655433222 2333345789999999644 444 678888888876666 77
Q ss_pred CChhHhHHHHHHHHhhccC
Q 002353 686 VDPVVDEMLAKFVIDSHFK 704 (932)
Q Consensus 686 ~d~~~D~~La~~vl~~h~~ 704 (932)
++...-..+-.+++..|..
T Consensus 273 ~~~~sl~~if~~~~~~~~~ 291 (1395)
T KOG3595|consen 273 PSQESLTQIFNTILTGHLR 291 (1395)
T ss_pred CChhhHHHHHHHHHhcccC
Confidence 8777778888888877754
No 329
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.08 E-value=0.085 Score=45.57 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=20.2
Q ss_pred EEEeCCCCchHHHHHHHHHHhC
Q 002353 538 VLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~~~ 559 (932)
+.++|+||+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999875
No 330
>PRK06762 hypothetical protein; Provisional
Probab=93.06 E-value=0.093 Score=52.90 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=22.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
-|+|+|.||+|||++++.+++..+.
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~~ 28 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLGR 28 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999988743
No 331
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.06 E-value=0.08 Score=54.11 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=24.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
.++|+|+||+|||++++.+++.++...+
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~~~~~ 31 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLAEPWL 31 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCcc
Confidence 6999999999999999999998765433
No 332
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=93.05 E-value=0.13 Score=65.73 Aligned_cols=88 Identities=19% Similarity=0.191 Sum_probs=46.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC---CcEEecCC-CcccccccceeecCccc-chhh--hccCceeccCCCeeeecccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ---RAVYTTGK-GASAVGLTAAVHKDPVT-REWT--LEGGALVLADRGICLIDEFD 609 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~---r~v~~~g~-~ss~~gLta~v~kd~~~-g~~~--le~Gal~lAd~GIl~IDE~d 609 (932)
.++|.|.||||||++++.+...+. ..+..... +..+..|..+......| ..|. ...|...+....+++|||+.
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS 443 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAG 443 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECcc
Confidence 467999999999999998766532 22332111 11111111000000001 0110 11233344566799999999
Q ss_pred ccCcchhhhHHHHHh
Q 002353 610 KMNDQDRVSIHEAME 624 (932)
Q Consensus 610 km~~~~~~~L~eamE 624 (932)
.++......|+...+
T Consensus 444 Mv~~~~m~~LL~~a~ 458 (988)
T PRK13889 444 MVGTRQLERVLSHAA 458 (988)
T ss_pred cCCHHHHHHHHHhhh
Confidence 998776666665443
No 333
>PF01057 Parvo_NS1: Parvovirus non-structural protein NS1; InterPro: IPR001257 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents the helicase domain of the Parvovirus NS1 protein; which is required for viral DNA replication []. This domain contains the ATP/GTP-binding site motif A (P-loop). Parvoviral NS1 also regulates host gene expression through histone acetylation []. ; GO: 0019079 viral genome replication; PDB: 3P0S_A 1S9H_A 1U0J_A.
Probab=92.99 E-value=0.3 Score=53.77 Aligned_cols=96 Identities=9% Similarity=0.103 Sum_probs=57.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcchh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDR 616 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~ 616 (932)
-|+|+|||+||||.|+.+|++..+.---.... +..+.+. -..++-+++.||.. |.....
T Consensus 115 ti~~~Gp~~tGKt~la~aI~~~~~~~G~vn~~----------------n~nF~f~----d~~~k~l~~weE~~-~~~~~v 173 (271)
T PF01057_consen 115 TIWFYGPASTGKTNLADAIANAVPNYGCVNWN----------------NNNFPFQ----DCFNKRLIWWEEPN-MYPDEV 173 (271)
T ss_dssp EEEEESTTTSSHCHCHHCCCHHSCCEEEEECT----------------TTCCCCC----CCCCECEEECTCGG-CCTTCH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCcccEeccC----------------CCCCChh----hhhhccEEEecccC-ccHHHH
Confidence 69999999999999999999887541100100 0011110 11234567788874 555555
Q ss_pred hhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCC
Q 002353 617 VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVG 653 (932)
Q Consensus 617 ~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~ 653 (932)
..+..++.-..+.|.........-.++.||.++|-.-
T Consensus 174 e~~K~ilgG~~v~vd~K~k~~~~~~~tPviItsn~di 210 (271)
T PF01057_consen 174 ETAKMILGGTPVRVDVKNKDSEELERTPVIITSNNDI 210 (271)
T ss_dssp HHHHHCCTTSEEEEEETTTEEEEEEEEEEEEEECCEC
T ss_pred HHHHHHhCCCceEeecccCCceEecCCceEEEeccce
Confidence 5555566666676643333333345677888888754
No 334
>PF13245 AAA_19: Part of AAA domain
Probab=92.96 E-value=0.11 Score=45.88 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=17.0
Q ss_pred eEEEeCCCCchHH-HHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKS-QFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS-~Lak~va~~~ 559 (932)
-+++.|+|||||| +++..++...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556999999999 5666666554
No 335
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=92.87 E-value=0.097 Score=55.19 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=23.4
Q ss_pred EEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 538 VLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
|+|+|+||+|||++++.+++........
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7999999999999999999876544443
No 336
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.84 E-value=0.8 Score=53.31 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=31.4
Q ss_pred eeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCC
Q 002353 602 ICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPV 652 (932)
Q Consensus 602 Il~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~ 652 (932)
++++||+|.+....+..|+++.|=- ...+.++.+|+-||..
T Consensus 259 llVlDEmD~L~tr~~~vLy~lFewp----------~lp~sr~iLiGiANsl 299 (529)
T KOG2227|consen 259 LLVLDEMDHLITRSQTVLYTLFEWP----------KLPNSRIILIGIANSL 299 (529)
T ss_pred EEEechhhHHhhcccceeeeehhcc----------cCCcceeeeeeehhhh
Confidence 7899999999988888887776611 1235788899999964
No 337
>PLN02200 adenylate kinase family protein
Probab=92.80 E-value=0.14 Score=55.32 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=24.8
Q ss_pred CceEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
...|+|+|+||+|||++++.+++..+-..+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~hi 72 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKHL 72 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 347999999999999999999987654433
No 338
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.77 E-value=0.1 Score=54.01 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=24.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
.+.|+|++|+|||+|++.++...+..++.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 78999999999999999998876544443
No 339
>PRK14526 adenylate kinase; Provisional
Probab=92.76 E-value=0.11 Score=55.08 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=24.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEec
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTT 566 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~ 566 (932)
+++|+|+||+|||++++.+++...-..+.+
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~ 31 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIST 31 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeec
Confidence 689999999999999999998765444433
No 340
>PRK02496 adk adenylate kinase; Provisional
Probab=92.74 E-value=0.098 Score=53.77 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=23.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
.++|+|+||+|||++++.+++.......
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i 30 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHI 30 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 6899999999999999999987654443
No 341
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.63 E-value=0.12 Score=50.53 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=24.3
Q ss_pred EEEeCCCCchHHHHHHHHHHhCCCcEEec
Q 002353 538 VLLLGDPGTAKSQFLKYVEKTGQRAVYTT 566 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~~~~r~v~~~ 566 (932)
|.|+|+||+|||++++.+++...-.++..
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~ 30 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDT 30 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 68999999999999999999876555543
No 342
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=92.47 E-value=0.14 Score=51.94 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=22.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-++|+||+|+|||+|+|.++.+.+
T Consensus 31 ~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccC
Confidence 689999999999999999998754
No 343
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=92.43 E-value=0.062 Score=69.11 Aligned_cols=89 Identities=19% Similarity=0.291 Sum_probs=51.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC---CcEEecCCCc-ccccccceeecCccc-chhhh--ccCceeccCCCeeeecccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ---RAVYTTGKGA-SAVGLTAAVHKDPVT-REWTL--EGGALVLADRGICLIDEFD 609 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~---r~v~~~g~~s-s~~gLta~v~kd~~~-g~~~l--e~Gal~lAd~GIl~IDE~d 609 (932)
-++|.|.+|||||++++.+...+. ..+.....+. .+..|....-....| ..|.+ ..|...+..+.+++|||..
T Consensus 399 ~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TIas~ll~~~~~~~~l~~~~vlVIDEAs 478 (1102)
T PRK13826 399 IAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTLSSWELRWNQGRDQLDNKTVFVLDEAG 478 (1102)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeHHHHHhhhccCccCCCCCcEEEEECcc
Confidence 589999999999999999877542 2233211111 111110000000000 11211 2344445556799999999
Q ss_pred ccCcchhhhHHHHHhh
Q 002353 610 KMNDQDRVSIHEAMEQ 625 (932)
Q Consensus 610 km~~~~~~~L~eamEq 625 (932)
.++......|+...+.
T Consensus 479 Mv~~~~m~~Ll~~~~~ 494 (1102)
T PRK13826 479 MVASRQMALFVEAVTR 494 (1102)
T ss_pred cCCHHHHHHHHHHHHh
Confidence 9988877788877764
No 344
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.31 E-value=0.14 Score=54.14 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=25.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEec
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTT 566 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~ 566 (932)
.|+++|+||+|||++++.+++..+-..+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 589999999999999999998876555543
No 345
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.11 E-value=0.12 Score=48.47 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=20.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.|+++|++|+|||+|++.+....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 346
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=92.09 E-value=0.097 Score=55.88 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=20.5
Q ss_pred cCCceEEEeCCCCchHHHHHHHHH
Q 002353 533 RGDINVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 533 RgdinvLLvGdPGTGKS~Lak~va 556 (932)
|....+||+|+||+|||++|++++
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcC
Confidence 334589999999999999999885
No 347
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.08 E-value=0.23 Score=48.90 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
.++|.|+.|+|||+|+|.+++.+..
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 7999999999999999999998753
No 348
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.06 E-value=0.17 Score=57.37 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=23.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
|+|++|++|+|||++++++....|.
T Consensus 162 nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred cEEEECCCCCCHHHHHHHHHhhCCC
Confidence 9999999999999999999887764
No 349
>COG1485 Predicted ATPase [General function prediction only]
Probab=92.05 E-value=0.069 Score=59.95 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=22.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA 562 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~ 562 (932)
.+.|+|+-|.|||.|.-..-..+|..
T Consensus 67 GlYl~GgVGrGKT~LMD~Fy~~lp~~ 92 (367)
T COG1485 67 GLYLWGGVGRGKTMLMDLFYESLPGE 92 (367)
T ss_pred eEEEECCCCccHHHHHHHHHhhCCcc
Confidence 69999999999999999888777653
No 350
>PRK13946 shikimate kinase; Provisional
Probab=92.00 E-value=0.17 Score=52.35 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=26.8
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCcEEec
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRAVYTT 566 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~v~~~ 566 (932)
-+|+|+|.||+|||++++.+++.+...++.+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~ 41 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDA 41 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECc
Confidence 3899999999999999999999887665543
No 351
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.00 E-value=0.14 Score=52.38 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=27.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEec
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTT 566 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~ 566 (932)
+|.|+|.+|+|||++.+.+|+.+...++-+
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~ 33 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPFIDT 33 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCcccc
Confidence 899999999999999999999998876643
No 352
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.00 E-value=0.15 Score=51.65 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=25.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
+++|+|.||+|||++++.+++.+...++.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d 32 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVD 32 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 78999999999999999999987666554
No 353
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.94 E-value=0.13 Score=52.60 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-++|+|+||+|||++++.++...+
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999988754
No 354
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=91.89 E-value=0.56 Score=52.22 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=43.6
Q ss_pred cCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccce-EEEeeeCCCCCccCCCCCcccccCCChhhhccc
Q 002353 598 ADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARC-SVIAAANPVGGRYDSSKTFSENVELTDPIISRF 676 (932)
Q Consensus 598 Ad~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~-sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRF 676 (932)
+...|++||+.++|+....++|+..+|+= +.++ .|+.|.|+. .+.+.+.||+
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEP-------------p~~t~~iL~t~~~~--------------~lLpTI~SRc 155 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEP-------------QSEIYIFLLTNDEN--------------KVLPTIKSRT 155 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEECChh--------------hCchHHHHcc
Confidence 34569999999999999999999999952 2223 345555553 6889999999
Q ss_pred cEEEE
Q 002353 677 DVLCV 681 (932)
Q Consensus 677 Dli~~ 681 (932)
-.+-+
T Consensus 156 q~i~f 160 (290)
T PRK07276 156 QIFHF 160 (290)
T ss_pred eeeeC
Confidence 87766
No 355
>PRK13948 shikimate kinase; Provisional
Probab=91.78 E-value=0.17 Score=52.39 Aligned_cols=29 Identities=24% Similarity=0.052 Sum_probs=26.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
+|+|+|.+|+|||++++.+++.+...++-
T Consensus 12 ~I~LiG~~GsGKSTvg~~La~~lg~~~iD 40 (182)
T PRK13948 12 WVALAGFMGTGKSRIGWELSRALMLHFID 40 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 89999999999999999999988776654
No 356
>PRK08233 hypothetical protein; Provisional
Probab=91.70 E-value=0.14 Score=52.08 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=21.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-|.+.|+||+|||++++.++..++
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 578899999999999999998875
No 357
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.62 E-value=0.25 Score=51.08 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=22.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
+++|+|++|+|||++++++....+
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 899999999999999999987754
No 358
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=91.61 E-value=0.18 Score=51.19 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
-++|+|++|+|||+|+.++...
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999988754
No 359
>PLN02459 probable adenylate kinase
Probab=91.55 E-value=0.19 Score=54.88 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=25.6
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCcEEec
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRAVYTT 566 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~v~~~ 566 (932)
++++|+|+||+||+++++.+++...-..+.+
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~ 60 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIAT 60 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeC
Confidence 4899999999999999999999875544443
No 360
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.52 E-value=0.059 Score=56.79 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
-+.|+||+|+|||+|+|.+..+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999988644
No 361
>PRK14529 adenylate kinase; Provisional
Probab=91.46 E-value=0.16 Score=54.46 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=23.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAV 563 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v 563 (932)
+|+|+|+||+|||++++.+++......
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~ 28 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAH 28 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
Confidence 689999999999999999998875443
No 362
>PRK14527 adenylate kinase; Provisional
Probab=91.41 E-value=0.15 Score=52.78 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
-++++|+||+|||++++.+++....
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5999999999999999999876543
No 363
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=91.29 E-value=0.19 Score=55.74 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-++|+|+||+|||++++.+++..+
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~ 27 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNP 27 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999998874
No 364
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.12 E-value=0.34 Score=48.45 Aligned_cols=89 Identities=18% Similarity=0.249 Sum_probs=47.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc---EEecCCCcccc---ccc--ceeecCcccchhh-hccCceeccCCCeeeecc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA---VYTTGKGASAV---GLT--AAVHKDPVTREWT-LEGGALVLADRGICLIDE 607 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~---v~~~g~~ss~~---gLt--a~v~kd~~~g~~~-le~Gal~lAd~GIl~IDE 607 (932)
.+.|+|++|+|||+|++.++...+.. ++..|...... ... .++...-..|+.. +.-......+..++++||
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilDE 106 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLDE 106 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 78999999999999999999876431 22222111000 000 0000001112111 111111223568999999
Q ss_pred cc-ccCcchhhhHHHHHhh
Q 002353 608 FD-KMNDQDRVSIHEAMEQ 625 (932)
Q Consensus 608 ~d-km~~~~~~~L~eamEq 625 (932)
.. .++...+..+.+++.+
T Consensus 107 p~~~lD~~~~~~l~~~l~~ 125 (157)
T cd00267 107 PTSGLDPASRERLLELLRE 125 (157)
T ss_pred CCcCCCHHHHHHHHHHHHH
Confidence 87 4666667777777764
No 365
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.03 E-value=0.17 Score=51.56 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
-++|+|++|+|||++++.++...+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 5889999999999999999987654
No 366
>PLN02674 adenylate kinase
Probab=90.98 E-value=0.23 Score=53.81 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=24.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
+|+|+|+||+||+++++.+++...-...
T Consensus 33 ~i~l~G~PGsGKgT~a~~La~~~~~~hi 60 (244)
T PLN02674 33 RLILIGPPGSGKGTQSPIIKDEYCLCHL 60 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 8999999999999999999997654433
No 367
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=90.94 E-value=0.18 Score=50.82 Aligned_cols=21 Identities=19% Similarity=0.537 Sum_probs=17.9
Q ss_pred EEEeCCCCchHHHHHHHHHHh
Q 002353 538 VLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~~ 558 (932)
|.|+|.||||||+|++.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 368
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=90.86 E-value=0.24 Score=55.06 Aligned_cols=64 Identities=19% Similarity=0.235 Sum_probs=40.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcch
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQD 615 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~ 615 (932)
-+-|+|++++|||++++.++.....+. ++..+..- | ...++ +.....+...++|||+....+..
T Consensus 195 ~~hl~G~Ss~GKTt~~~~a~Sv~G~p~----------~l~~sw~~---T-~n~le-~~a~~~nd~~l~lDE~~~~~~~~ 258 (286)
T PF06048_consen 195 GFHLYGQSSSGKTTALQLAASVWGNPD----------GLIRSWNS---T-DNGLE-RTAAAHNDLPLVLDELSQADPKD 258 (286)
T ss_pred EEEEEeCCCCCHHHHHHHhhhhCcCch----------hhhhcchh---h-HHHHH-HHHHHcCCcceEehhccccchhH
Confidence 678999999999999999887654432 22222210 0 01111 12234466789999999877654
No 369
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=90.80 E-value=0.24 Score=51.16 Aligned_cols=83 Identities=17% Similarity=0.127 Sum_probs=46.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc---EEecCCCcccccccceeecCc-cc-chhh-hccCceeccCCCeeeecccc-
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA---VYTTGKGASAVGLTAAVHKDP-VT-REWT-LEGGALVLADRGICLIDEFD- 609 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~---v~~~g~~ss~~gLta~v~kd~-~~-g~~~-le~Gal~lAd~GIl~IDE~d- 609 (932)
.+.|+|+.|+|||+|++.++.+.+.. +...|.. .+ .+.... .+ |+.. +.-......+..++++||-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~---i~---~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT---PV---YKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE---EE---EEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 68899999999999999999875431 2222210 11 111111 11 1111 11112223366899999976
Q ss_pred ccCcchhhhHHHHHhh
Q 002353 610 KMNDQDRVSIHEAMEQ 625 (932)
Q Consensus 610 km~~~~~~~L~eamEq 625 (932)
.++...+..+.+++.+
T Consensus 101 ~LD~~~~~~l~~~l~~ 116 (177)
T cd03222 101 YLDIEQRLNAARAIRR 116 (177)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4555666667776653
No 370
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=90.75 E-value=0.24 Score=61.66 Aligned_cols=37 Identities=30% Similarity=0.439 Sum_probs=27.9
Q ss_pred HHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHh
Q 002353 508 EDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 508 ~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.+-+.|++.+|... . ..||.|-||||||+++-.+-++
T Consensus 672 ~dQr~A~~k~L~ae--------d------y~LI~GMPGTGKTTtI~~LIki 708 (1100)
T KOG1805|consen 672 NDQRQALLKALAAE--------D------YALILGMPGTGKTTTISLLIKI 708 (1100)
T ss_pred HHHHHHHHHHHhcc--------c------hheeecCCCCCchhhHHHHHHH
Confidence 44556777666654 2 8999999999999988777665
No 371
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=90.70 E-value=0.24 Score=42.18 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
..+|+|+.|+|||+|+.++.-.+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 59999999999999999998764
No 372
>PRK04040 adenylate kinase; Provisional
Probab=90.70 E-value=0.23 Score=51.64 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=22.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.|+++|.||+|||++++.+++.++
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999998874
No 373
>PRK06547 hypothetical protein; Provisional
Probab=90.70 E-value=0.37 Score=49.45 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
.|++.|++|+|||++++.+++....
T Consensus 17 ~i~i~G~~GsGKTt~a~~l~~~~~~ 41 (172)
T PRK06547 17 TVLIDGRSGSGKTTLAGALAARTGF 41 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6888899999999999999987543
No 374
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=90.65 E-value=0.29 Score=61.51 Aligned_cols=155 Identities=18% Similarity=0.232 Sum_probs=77.9
Q ss_pred hcccccC-hHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEec---CCCcccccc
Q 002353 500 IAPSIYG-HEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTT---GKGASAVGL 575 (932)
Q Consensus 500 iap~I~G-~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~---g~~ss~~gL 575 (932)
+.|.|.+ .+++++.|-.. .... | -|-+|+|+||+|||.++.-+++-.-++-... ++....+.+
T Consensus 185 ldPvigr~deeirRvi~iL-~Rrt-k-----------~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEIL-SRKT-K-----------NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHH-hccC-C-----------CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 5677766 67777766543 2221 1 1889999999999999998887654432211 122222211
Q ss_pred cceeecCcccchhhhcc-Cce--ec-cCCC-eeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeC
Q 002353 576 TAAVHKDPVTREWTLEG-GAL--VL-ADRG-ICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAAN 650 (932)
Q Consensus 576 ta~v~kd~~~g~~~le~-Gal--~l-Ad~G-Il~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaN 650 (932)
-+-+......|++...- +.+ +. +.+| |+||||+.-+-..-.+ ..+|+.-. +-|.... .....+|+||.
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~--~~~~d~~n--lLkp~L~---rg~l~~IGatT 324 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN--YGAIDAAN--LLKPLLA---RGGLWCIGATT 324 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc--chHHHHHH--hhHHHHh---cCCeEEEeccc
Confidence 11010111112221110 011 11 3333 8999999887554322 11221100 0000000 11156788775
Q ss_pred CCCCccCCCCCcccccCCChhhhccccEEEEe
Q 002353 651 PVGGRYDSSKTFSENVELTDPIISRFDVLCVV 682 (932)
Q Consensus 651 p~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l 682 (932)
. .++..-+.-.++|=.||+++.+-
T Consensus 325 ~--------e~Y~k~iekdPalErrw~l~~v~ 348 (898)
T KOG1051|consen 325 L--------ETYRKCIEKDPALERRWQLVLVP 348 (898)
T ss_pred H--------HHHHHHHhhCcchhhCcceeEec
Confidence 2 13334456678888999999983
No 375
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=90.59 E-value=0.2 Score=51.12 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
.++++|.||||||++++.++.+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~~l 23 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLREL 23 (180)
T ss_pred eEEEeCCCCCchHHHHHHHHHh
Confidence 6899999999999999999843
No 376
>PRK01184 hypothetical protein; Provisional
Probab=90.55 E-value=0.25 Score=50.70 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=20.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
-|+|+|+||+|||++++. ++...-.++
T Consensus 3 ~i~l~G~~GsGKsT~a~~-~~~~g~~~i 29 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSKI-AREMGIPVV 29 (184)
T ss_pred EEEEECCCCCCHHHHHHH-HHHcCCcEE
Confidence 589999999999999984 444433333
No 377
>PF13479 AAA_24: AAA domain
Probab=90.49 E-value=0.19 Score=53.19 Aligned_cols=27 Identities=22% Similarity=0.620 Sum_probs=22.7
Q ss_pred CceEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
.+.+||+|+||+|||+++..+ ++.++.
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~i 29 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFI 29 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEE
Confidence 358999999999999999877 666665
No 378
>PRK03846 adenylylsulfate kinase; Provisional
Probab=90.49 E-value=0.18 Score=52.61 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=21.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-+.|+|.+|+|||+|++.++..+
T Consensus 26 ~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 26 VLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999865
No 379
>PRK05439 pantothenate kinase; Provisional
Probab=90.47 E-value=0.45 Score=53.47 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=47.3
Q ss_pred ccccCHHHHHHHHHHhcC------hhhHHHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCC
Q 002353 472 AYKLTQEDKEEIEKLAKD------PRIGERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPG 545 (932)
Q Consensus 472 ~~~lt~~d~~~i~~l~~~------~~i~~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPG 545 (932)
...+|+++++.++.+... .+||--|++.|.--.-+......++ -.+++.. ..+...-|.|.|+||
T Consensus 26 ~~~l~~~~~~~l~~~~~~~~~~~v~~iy~plarli~~~~~~~~~~~~~~-~~fl~~~--------~~~~~~iIgIaG~~g 96 (311)
T PRK05439 26 PLTLTEEELERLRGLNDPISLEEVAEIYLPLSRLLNLYVAANQRLQAAL-EQFLGKN--------GQKVPFIIGIAGSVA 96 (311)
T ss_pred CCCCCHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHhccc--------CCCCCEEEEEECCCC
Confidence 346888888888765432 2455555555443222333332222 2223311 112234789999999
Q ss_pred chHHHHHHHHHHhCC
Q 002353 546 TAKSQFLKYVEKTGQ 560 (932)
Q Consensus 546 TGKS~Lak~va~~~~ 560 (932)
+|||++++.++..+.
T Consensus 97 sGKSTla~~L~~~l~ 111 (311)
T PRK05439 97 VGKSTTARLLQALLS 111 (311)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 380
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=90.43 E-value=0.52 Score=52.95 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=27.2
Q ss_pred CCceEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
..-+|.|+|.||+|||++++.+++.+...++.
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id 163 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFVE 163 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 33489999999999999999999988776653
No 381
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=90.42 E-value=0.28 Score=48.31 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.9
Q ss_pred EEEeCCCCchHHHHHHHHHHhCCCc
Q 002353 538 VLLLGDPGTAKSQFLKYVEKTGQRA 562 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~~~~r~ 562 (932)
+.|+||+|+|||+|++.+++..+..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 6789999999999999999886543
No 382
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=90.36 E-value=0.29 Score=49.18 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=19.3
Q ss_pred eEEEeCCCCchHHH-HHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQ-FLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~-Lak~va~~~~ 560 (932)
++++.|++|+|||. ++.++.....
T Consensus 26 ~~~i~~~~GsGKT~~~~~~~~~~~~ 50 (201)
T smart00487 26 DVILAAPTGSGKTLAALLPALEALK 50 (201)
T ss_pred cEEEECCCCCchhHHHHHHHHHHhc
Confidence 89999999999999 6666665543
No 383
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=90.35 E-value=0.27 Score=51.61 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=23.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAV 563 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v 563 (932)
-+++.|.||+|||++++.++.......
T Consensus 5 ~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 5 IHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 689999999999999999998865443
No 384
>PRK06851 hypothetical protein; Provisional
Probab=90.33 E-value=0.3 Score=55.98 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=21.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-++|.|+||||||+|++.+++.+
T Consensus 216 ~~~i~G~pG~GKstl~~~i~~~a 238 (367)
T PRK06851 216 RYFLKGRPGTGKSTMLKKIAKAA 238 (367)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Confidence 59999999999999999998875
No 385
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.23 E-value=0.23 Score=51.88 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=22.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+|++|+|||+|++.++...+
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 699999999999999999999876
No 386
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.17 E-value=0.2 Score=53.92 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
=|.|+||+|||||+|++.++.+.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999764
No 387
>PRK04182 cytidylate kinase; Provisional
Probab=90.16 E-value=0.29 Score=49.56 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=24.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
.|+|+|.||+|||++++.+++.+...++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 58999999999999999999887655443
No 388
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=90.14 E-value=0.26 Score=49.54 Aligned_cols=29 Identities=17% Similarity=0.309 Sum_probs=24.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
-|.|.|+||+|||++++.+++.++-.++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 48899999999999999999887655544
No 389
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=90.12 E-value=0.24 Score=49.72 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.6
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
+++++|+|+||+|||.|++++.+-
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhC
Confidence 358999999999999999988643
No 390
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=90.08 E-value=0.21 Score=59.31 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=25.0
Q ss_pred ccCCceEEEeCCCCchHHHHHHHHHHhCC
Q 002353 532 LRGDINVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 532 ~RgdinvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
+...-|+||+||+|||||.|+|.++.+.|
T Consensus 458 V~~g~~LLItG~sG~GKtSLlRvlggLWp 486 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSLLRVLGGLWP 486 (659)
T ss_pred ecCCCeEEEECCCCCchhHHHHHHhcccc
Confidence 34445999999999999999999998875
No 391
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=90.03 E-value=1.3 Score=46.23 Aligned_cols=29 Identities=34% Similarity=0.495 Sum_probs=16.1
Q ss_pred EEEeCCCCchHHHHHHHH-HH---hCCCcEEec
Q 002353 538 VLLLGDPGTAKSQFLKYV-EK---TGQRAVYTT 566 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~v-a~---~~~r~v~~~ 566 (932)
.|++|-||+|||..|-.. .. ...|.+++.
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~tn 35 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYTN 35 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEEc
Confidence 689999999999977443 21 135667763
No 392
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.03 E-value=0.21 Score=56.97 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
|+|++|++|+|||++++++....|.
T Consensus 164 nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred eEEEECCCCccHHHHHHHHHcccCC
Confidence 9999999999999999999876653
No 393
>PRK12678 transcription termination factor Rho; Provisional
Probab=89.98 E-value=0.37 Score=57.79 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
..||+||||||||+|++.|++..
T Consensus 418 R~LIvgpp~aGKTtLL~~IAn~i 440 (672)
T PRK12678 418 RGLIVSPPKAGKTTILQNIANAI 440 (672)
T ss_pred EeEEeCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998743
No 394
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=89.86 E-value=0.26 Score=49.23 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=20.5
Q ss_pred EEEeCCCCchHHHHHHHHHHhC
Q 002353 538 VLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~~~ 559 (932)
++|+|.||+|||++++.++...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999876
No 395
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=89.78 E-value=0.39 Score=50.23 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=22.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
+++|+||.|+|||.|++.+.....
T Consensus 22 ~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 22 HILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCcCCHHHHHHHHHHHhh
Confidence 899999999999999999988774
No 396
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=89.66 E-value=0.25 Score=50.44 Aligned_cols=20 Identities=40% Similarity=0.529 Sum_probs=16.9
Q ss_pred EEEeCCCCchHHHHHHHHHH
Q 002353 538 VLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~ 557 (932)
+|+.|+||||||.|+..++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~ 21 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLY 21 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999998875544
No 397
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=89.63 E-value=0.66 Score=52.93 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.+|++|++|+|||++++++....+
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 899999999999999999887554
No 398
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=89.59 E-value=0.26 Score=46.49 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=19.3
Q ss_pred eEEEeCCCCchHHHHHHHHHH
Q 002353 537 NVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~ 557 (932)
.|+|+|.||+|||+|++++..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999985
No 399
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=89.59 E-value=0.28 Score=47.18 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=19.7
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
++|+++|++|+|||+|+..+..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~ 23 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLG 23 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999988764
No 400
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=89.55 E-value=0.32 Score=49.14 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=25.6
Q ss_pred EEEeCCCCchHHHHHHHHHHhCCCcEEecC
Q 002353 538 VLLLGDPGTAKSQFLKYVEKTGQRAVYTTG 567 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~~~~r~v~~~g 567 (932)
|-+-|+||+|||++++-+++...-.++.+|
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vsaG 32 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVSAG 32 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceeecc
Confidence 567899999999999999999877766544
No 401
>PRK14709 hypothetical protein; Provisional
Probab=89.54 E-value=2 Score=51.10 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=63.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcchh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDR 616 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~ 616 (932)
=++|+|+-|.|||+|++.+..+++. +.+ .++...++... .+..+ ...-.+...-+++.+|.+.=..-.
T Consensus 207 ~~~l~G~G~NGKSt~~~~i~~llG~--~~~--~~~~~~~~~~~-~~~~~------~~lA~L~Gkrlv~~~E~~~g~~~~- 274 (469)
T PRK14709 207 LVFVFGGGGNGKSVFLNVLAGILGD--YAT--TAAMDTFTASK-HDRHP------TDLAMLRGARLVTASETEEGRAWA- 274 (469)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhh--hcc--cCCHHHHhhcc-ccCCc------hhhHhhcCCeEEEeecCCcccccC-
Confidence 5788999999999999999988753 211 11111122111 01000 011112233466778876422111
Q ss_pred hhHHHHHhh-ceeeeecc-ceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEE
Q 002353 617 VSIHEAMEQ-QSISISKA-GIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVL 679 (932)
Q Consensus 617 ~~L~eamEq-q~isi~ka-gi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli 679 (932)
.+++..|-. -.|++..- ....+....+.++.+||-.+.-. .-+.++.+|+-+|
T Consensus 275 ~~~iK~ltGGD~i~ar~~~k~~f~f~p~~kl~~~~N~~P~~~----------d~d~g~~RR~~iI 329 (469)
T PRK14709 275 EARIKQMTGGDTITARFMRQDFFEFVPQFKLTIVGNHKPRLR----------NVDEAARRRFNIV 329 (469)
T ss_pred HHHHHhhhCCCcEEeecccCCceEEEeeeEEEEEcCCCCccC----------CCCceeEeeEEEE
Confidence 234444443 33555322 22345556788888999866322 3456788887443
No 402
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=89.52 E-value=0.28 Score=48.52 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.5
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
+.|+++|+||+|||.|+..+..
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~ 22 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCE 22 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999988764
No 403
>PRK08356 hypothetical protein; Provisional
Probab=89.50 E-value=0.41 Score=49.84 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=19.5
Q ss_pred eEEEeCCCCchHHHHHHHHHH
Q 002353 537 NVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~ 557 (932)
.++|+|+||+|||++++++.+
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999965
No 404
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=89.45 E-value=0.24 Score=53.68 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.8
Q ss_pred EEEeCCCCchHHHHHHHHHHhCC
Q 002353 538 VLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~~~~ 560 (932)
|+|+|.||+|||++++.+++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998753
No 405
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=89.45 E-value=0.28 Score=49.66 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.6
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
.+|+|+|+||+|||+|++.+..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~ 23 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVE 23 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999988764
No 406
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=89.22 E-value=0.4 Score=52.44 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=23.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA 562 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~ 562 (932)
+||++|++|+|||++++++....+..
T Consensus 129 ~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 129 NILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred EEEEECCCccccchHHHHHhhhcccc
Confidence 99999999999999999998887654
No 407
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=89.12 E-value=0.38 Score=50.42 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
-++|+|+||+|||+|+..++..
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~ 35 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVN 35 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999877653
No 408
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=89.04 E-value=0.31 Score=48.52 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.1
Q ss_pred ceEEEeCCCCchHHHHHHHHHHh
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~ 558 (932)
+.|+++|++|+|||.|++.+...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999987653
No 409
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=89.03 E-value=0.3 Score=51.32 Aligned_cols=24 Identities=13% Similarity=0.147 Sum_probs=22.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-|.|+|++|+|||+|++.++..++
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999998865
No 410
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=89.03 E-value=0.31 Score=48.13 Aligned_cols=22 Identities=32% Similarity=0.662 Sum_probs=19.5
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
+.|+++|+||+|||+|++.+..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~ 22 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTD 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999998863
No 411
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=88.95 E-value=0.3 Score=47.28 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=19.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
+|+++|+||+|||+|+..+...
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999987643
No 412
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=88.91 E-value=0.32 Score=48.52 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=18.9
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
+.|+++|+||+|||+|+..+..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~ 22 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLM 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999976653
No 413
>PRK05480 uridine/cytidine kinase; Provisional
Probab=88.89 E-value=0.36 Score=50.70 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=22.3
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhC
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~ 559 (932)
.-|.|.|++|+|||+|++.+++..
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999986
No 414
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=88.89 E-value=0.26 Score=51.62 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
=|+|.|.||+|||++++-+++.+..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHH
Confidence 3789999999999999999998643
No 415
>PRK14737 gmk guanylate kinase; Provisional
Probab=88.88 E-value=0.38 Score=50.00 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=22.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
-+.|+||||+|||+|++.+.+..|.
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~~~~ 30 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEEHPD 30 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCc
Confidence 6899999999999999999887654
No 416
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=88.88 E-value=0.32 Score=50.62 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=22.1
Q ss_pred cCCceEEEeCCCCchHHHHHHHHHHh
Q 002353 533 RGDINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 533 RgdinvLLvGdPGTGKS~Lak~va~~ 558 (932)
++.+.|+|+|+||+|||+|++.+...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcc
Confidence 34569999999999999999988754
No 417
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=88.87 E-value=0.28 Score=40.83 Aligned_cols=47 Identities=23% Similarity=0.416 Sum_probs=28.3
Q ss_pred Eecccc-eeeeEEEEEcCCCCCccccccccCcccccCCCCCCCCCCCc
Q 002353 333 RRTGVF-PQLQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSKGP 379 (932)
Q Consensus 333 r~s~V~-p~l~~~~f~C~~C~~~~~~~~q~~~~~~~p~~C~~C~s~~~ 379 (932)
....+. |.-+.+.|.|++||.++-.--+...+.-.+..||+|+-.||
T Consensus 14 SCg~~i~p~e~~v~F~CPnCGe~~I~Rc~~CRk~g~~Y~Cp~CGF~GP 61 (61)
T COG2888 14 SCGREIAPGETAVKFPCPNCGEVEIYRCAKCRKLGNPYRCPKCGFEGP 61 (61)
T ss_pred cCCCEeccCCceeEeeCCCCCceeeehhhhHHHcCCceECCCcCccCC
Confidence 333333 66677899999999653211222222335678999986664
No 418
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=88.80 E-value=0.33 Score=48.72 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.1
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.+.|+|+|++|+|||+|++.+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 458999999999999999988753
No 419
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=88.78 E-value=0.67 Score=51.62 Aligned_cols=25 Identities=12% Similarity=0.095 Sum_probs=21.9
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCC
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.-|-|.|++|+|||++++.+..++.
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999988764
No 420
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=88.76 E-value=0.33 Score=50.50 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=20.4
Q ss_pred EEEeCCCCchHHHHHHHHHHhC
Q 002353 538 VLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~~~ 559 (932)
|.|.|++|+|||+|++.++..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999886
No 421
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=88.67 E-value=0.35 Score=47.45 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=18.9
Q ss_pred eEEEeCCCCchHHHHHHHHHH
Q 002353 537 NVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~ 557 (932)
.|+++|+||+|||+|++.+..
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999988764
No 422
>PRK05541 adenylylsulfate kinase; Provisional
Probab=88.62 E-value=0.31 Score=49.68 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.|+|+|.||+|||++++.+++.+.
T Consensus 9 ~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999987764
No 423
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=88.57 E-value=0.42 Score=52.33 Aligned_cols=56 Identities=25% Similarity=0.443 Sum_probs=38.6
Q ss_pred HhhcccccChHHHHHH--HhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCc
Q 002353 498 KSIAPSIYGHEDIKTA--LALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRA 562 (932)
Q Consensus 498 ~siap~I~G~~~vK~a--illaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~ 562 (932)
...+-.+.|++.+..| ++.-|+.. |...+ - -|||-||||||||.||-++++.+...
T Consensus 34 ~~~~~g~vGQ~~AReAagiivdlik~--KkmaG-r------avLlaGppgtGKTAlAlaisqELG~k 91 (456)
T KOG1942|consen 34 VEVAAGFVGQENAREAAGIIVDLIKS--KKMAG-R------AVLLAGPPGTGKTALALAISQELGPK 91 (456)
T ss_pred eecccccccchhhhhhhhHHHHHHHh--hhccC-c------EEEEecCCCCchhHHHHHHHHHhCCC
Confidence 3455567788888774 44444432 11211 1 79999999999999999999976543
No 424
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=88.49 E-value=0.27 Score=48.89 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.6
Q ss_pred EeCCCCchHHHHHHHHHHhCCC
Q 002353 540 LLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 540 LvGdPGTGKS~Lak~va~~~~r 561 (932)
|+|+||+||+++++.+++...-
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~ 22 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL 22 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS
T ss_pred CcCCCCCChHHHHHHHHHhcCc
Confidence 6899999999999999998643
No 425
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=88.46 E-value=0.36 Score=48.38 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.1
Q ss_pred ceEEEeCCCCchHHHHHHHHHHh
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~ 558 (932)
+.|+++|+||+|||.|+..+...
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 48999999999999999888643
No 426
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=88.45 E-value=0.48 Score=50.53 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=26.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTG 567 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g 567 (932)
.|.|.|++|+|||++++.+++.++-.++.+|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~g 34 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDSG 34 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeeCc
Confidence 6889999999999999999987766555544
No 427
>PRK13808 adenylate kinase; Provisional
Probab=88.45 E-value=0.44 Score=53.98 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=24.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
+|+|+|+||+|||++++.|++......+.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is 30 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLS 30 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 69999999999999999999887554443
No 428
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=88.40 E-value=0.37 Score=47.73 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.1
Q ss_pred eEEEeCCCCchHHHHHHHHHH
Q 002353 537 NVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~ 557 (932)
+++++|+||+|||.|++.+..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~ 22 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVE 22 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999998764
No 429
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=88.36 E-value=0.54 Score=52.80 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=22.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
+++++|++|+|||++++++....|
T Consensus 146 ~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 146 NIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHccCC
Confidence 999999999999999999987765
No 430
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=88.29 E-value=0.14 Score=61.19 Aligned_cols=45 Identities=24% Similarity=0.418 Sum_probs=0.0
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHH
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~ 557 (932)
+.++||+.+.+||-++|-=. ..|. ||.++|+|||||+++++.+.+
T Consensus 8 ~~~iGQ~RA~~Al~~gl~i~-----~~GY------NIfv~G~~GtGr~t~v~~~l~ 52 (509)
T PF13654_consen 8 EGIIGQERAVEALEFGLGIR-----KPGY------NIFVMGPPGTGRRTYVRRFLE 52 (509)
T ss_dssp --------------------------------------------------------
T ss_pred cccccccccccccccccccc-----cccc------ccccccccccccccccccccc
Confidence 56889999999999887432 1234 999999999999998875544
No 431
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=88.28 E-value=0.37 Score=47.78 Aligned_cols=22 Identities=23% Similarity=0.616 Sum_probs=19.4
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
++|+++|++|+|||.|+.++..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999987763
No 432
>PLN02165 adenylate isopentenyltransferase
Probab=88.24 E-value=0.53 Score=53.23 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=25.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
.++|+|++|+|||.|+..+++..+..+..
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~~eIIs 73 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFPSEIIN 73 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcCCceec
Confidence 68999999999999999999997655444
No 433
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=88.16 E-value=0.2 Score=57.00 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=29.8
Q ss_pred CCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCC
Q 002353 599 DRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGG 654 (932)
Q Consensus 599 d~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~G 654 (932)
+..+||+|||.--+-.+.-.|.+.|+.- -+. .+.++||+|+.+.
T Consensus 193 ea~lLCFDEfQVTDVADAmiL~rLf~~L----f~~--------GvVlvATSNR~P~ 236 (467)
T KOG2383|consen 193 EAILLCFDEFQVTDVADAMILKRLFEHL----FKN--------GVVLVATSNRAPE 236 (467)
T ss_pred hceeeeechhhhhhHHHHHHHHHHHHHH----HhC--------CeEEEEeCCCChH
Confidence 4579999999876666655566666532 122 3567899998763
No 434
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=88.12 E-value=0.36 Score=48.05 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
+|+++|++|+|||+|++.+...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhh
Confidence 5899999999999999988654
No 435
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=88.11 E-value=0.41 Score=47.28 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.0
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
..|+++|+||+|||+|+..+..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999887663
No 436
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=88.06 E-value=0.34 Score=54.86 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-+.|+||+|||||+++|.||.+-
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58889999999999999998653
No 437
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=88.05 E-value=0.49 Score=48.70 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
.+.|+|++|+|||++++.++.....
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5889999999999999999987643
No 438
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=88.04 E-value=0.31 Score=47.17 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+|++|+|||+|++.++...
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 79999999999999999987654
No 439
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=88.03 E-value=0.38 Score=50.37 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=21.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-++++||+|+|||++++++....+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 589999999999999998776654
No 440
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=88.01 E-value=0.26 Score=44.47 Aligned_cols=27 Identities=33% Similarity=0.773 Sum_probs=19.6
Q ss_pred EEcCCCCCccccccccCcccccCCCCCCCCCC
Q 002353 346 YDCNKCGAILGPFFQNSYSEVKVGSCPECQSK 377 (932)
Q Consensus 346 f~C~~C~~~~~~~~q~~~~~~~p~~C~~C~s~ 377 (932)
-.|.+||+++.. + ...+|+.||.|+|.
T Consensus 59 a~CkkCGfef~~---~--~ik~pSRCP~CKSE 85 (97)
T COG3357 59 ARCKKCGFEFRD---D--KIKKPSRCPKCKSE 85 (97)
T ss_pred hhhcccCccccc---c--ccCCcccCCcchhh
Confidence 369999998532 2 22369999999985
No 441
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=87.86 E-value=0.59 Score=47.88 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
.+|++|+||+|||.+|..++...+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~ 27 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL 27 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC
Confidence 6899999999999999999887543
No 442
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=87.80 E-value=0.39 Score=47.83 Aligned_cols=22 Identities=27% Similarity=0.637 Sum_probs=19.2
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
++|+++|+||+|||+|++.+..
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~ 22 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVN 22 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999988753
No 443
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.78 E-value=0.4 Score=51.21 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=21.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.+.|+|++|+|||+|++.++...+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 799999999999999999987653
No 444
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=87.71 E-value=0.4 Score=52.29 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+||.|+|||+|+|.++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 688999999999999999997653
No 445
>PRK00889 adenylylsulfate kinase; Provisional
Probab=87.67 E-value=0.39 Score=48.91 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.+.|+|.||+|||++++.++..+.
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999998763
No 446
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=87.65 E-value=0.42 Score=47.36 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=18.7
Q ss_pred eEEEeCCCCchHHHHHHHHHH
Q 002353 537 NVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~ 557 (932)
-|+++|+||+|||+|++.+..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998864
No 447
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=87.60 E-value=0.38 Score=50.71 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=21.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+|++|+|||+|++.++...
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 79999999999999999998664
No 448
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=87.57 E-value=0.44 Score=47.11 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.2
Q ss_pred ceEEEeCCCCchHHHHHHHHHHh
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~ 558 (932)
+.|+++|++|+|||+|++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999988653
No 449
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=87.50 E-value=0.56 Score=47.39 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
.++++||.|.|||.+++++.-.
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~ 44 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLA 44 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999997654
No 450
>PRK06851 hypothetical protein; Provisional
Probab=87.50 E-value=0.58 Score=53.73 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-++|.|+||||||++++.+...+.
T Consensus 32 ~~il~G~pGtGKStl~~~i~~~~~ 55 (367)
T PRK06851 32 IFILKGGPGTGKSTLMKKIGEEFL 55 (367)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999887764
No 451
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=87.46 E-value=0.42 Score=53.50 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=22.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
++|++|++|+|||++++++....+
T Consensus 134 ~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 134 NILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhh
Confidence 899999999999999999987754
No 452
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=87.44 E-value=0.41 Score=50.28 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+|++|+|||+|++.++...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998664
No 453
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.42 E-value=0.39 Score=50.43 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+|++|+|||+|++.++...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998654
No 454
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=87.39 E-value=0.43 Score=50.15 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+|++|+|||+|++.++...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999998654
No 455
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=87.36 E-value=0.51 Score=50.17 Aligned_cols=19 Identities=32% Similarity=0.523 Sum_probs=16.9
Q ss_pred eEEEeCCCCchHHHHHHHH
Q 002353 537 NVLLLGDPGTAKSQFLKYV 555 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~v 555 (932)
.+|+.|+||||||.|+...
T Consensus 21 ~~li~G~~GsGKT~l~~q~ 39 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQF 39 (226)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCcHHHHHHH
Confidence 7999999999999997643
No 456
>PLN02199 shikimate kinase
Probab=87.36 E-value=0.65 Score=51.67 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=25.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
+|+|+|.+|+|||++++.+++.+...++.
T Consensus 104 ~I~LIG~~GSGKSTVgr~LA~~Lg~~fID 132 (303)
T PLN02199 104 SMYLVGMMGSGKTTVGKLMSKVLGYTFFD 132 (303)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 89999999999999999999987666554
No 457
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=87.33 E-value=0.81 Score=61.89 Aligned_cols=89 Identities=18% Similarity=0.156 Sum_probs=47.2
Q ss_pred CceEEEeCCCCchHHHHHHHHHHhCCC-------cEEecCCCccc-ccccceeecCccc-chhhh------ccCceeccC
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKTGQR-------AVYTTGKGASA-VGLTAAVHKDPVT-REWTL------EGGALVLAD 599 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~~~r-------~v~~~g~~ss~-~gLta~v~kd~~~-g~~~l------e~Gal~lAd 599 (932)
+--++|.|.||||||++++.+...+.. .+....-+..+ ..|..... ...| ..|.. ..|......
T Consensus 984 dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e~Gi-~A~TI~s~L~~~~~~~~~~~~~~~~ 1062 (1747)
T PRK13709 984 DRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRSAGV-DAQTLASFLHDTQLQQRSGETPDFS 1062 (1747)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHHhcCc-chhhHHHHhcccccccccccCCCCC
Confidence 347999999999999999988766421 12211000000 00100000 0000 00100 011122234
Q ss_pred CCeeeeccccccCcchhhhHHHHHh
Q 002353 600 RGICLIDEFDKMNDQDRVSIHEAME 624 (932)
Q Consensus 600 ~GIl~IDE~dkm~~~~~~~L~eamE 624 (932)
+.+++|||...++..+...|+.+.+
T Consensus 1063 ~~llIVDEaSMv~~~~m~~Ll~~~~ 1087 (1747)
T PRK13709 1063 NTLFLLDESSMVGNTDMARAYALIA 1087 (1747)
T ss_pred CcEEEEEccccccHHHHHHHHHhhh
Confidence 5799999999999887777777665
No 458
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=87.30 E-value=0.39 Score=49.97 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=21.6
Q ss_pred EEEeCCCCchHHHHHHHHHHhCCC
Q 002353 538 VLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~~~~r 561 (932)
|.|.|+||+|||+||+.++..+..
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 678999999999999999998764
No 459
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=87.30 E-value=0.44 Score=57.61 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=23.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
++||.|++|+|||+|+|+++.+.|-
T Consensus 421 ~llI~G~SG~GKTsLlRaiaGLWP~ 445 (604)
T COG4178 421 RLLITGESGAGKTSLLRALAGLWPW 445 (604)
T ss_pred EEEEECCCCCCHHHHHHHHhccCcc
Confidence 8999999999999999999998774
No 460
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=87.27 E-value=0.45 Score=51.09 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+|++|+|||+|++.++.+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 79999999999999999998654
No 461
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=87.27 E-value=0.4 Score=46.51 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=18.6
Q ss_pred EEEeCCCCchHHHHHHHHHHh
Q 002353 538 VLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~~ 558 (932)
|+|+|++|+|||+|++.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999988643
No 462
>PRK14738 gmk guanylate kinase; Provisional
Probab=87.20 E-value=0.52 Score=49.65 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-++|+|+||+|||+|++.+.+..+
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~~~ 38 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRERKL 38 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhcCC
Confidence 588899999999999999986643
No 463
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=87.17 E-value=0.66 Score=47.65 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=22.1
Q ss_pred EEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 538 VLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
|.|+|.||+|||++++.+++ ..-.++.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~ 28 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVID 28 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEe
Confidence 68999999999999999998 4444443
No 464
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=87.17 E-value=0.45 Score=47.29 Aligned_cols=22 Identities=32% Similarity=0.688 Sum_probs=19.6
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
+.|+++|+||+|||+|++.+..
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~ 25 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTR 25 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999998864
No 465
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=87.16 E-value=0.4 Score=53.22 Aligned_cols=24 Identities=21% Similarity=0.634 Sum_probs=21.6
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
+.+||++|++|+|||+|++.+...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~ 27 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNS 27 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhc
Confidence 459999999999999999999764
No 466
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=87.15 E-value=0.54 Score=47.17 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.2
Q ss_pred ceEEEeCCCCchHHHHHHHHHHh
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~ 558 (932)
..|||+|++|+|||+++..+.+.
T Consensus 15 ~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 15 IGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 38999999999999999877664
No 467
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=87.14 E-value=0.42 Score=47.14 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=18.5
Q ss_pred eEEEeCCCCchHHHHHHHHHH
Q 002353 537 NVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~ 557 (932)
+|+|+|+||+|||+|++.+..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~ 21 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKH 21 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhc
Confidence 489999999999999988764
No 468
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=87.10 E-value=0.66 Score=48.36 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.8
Q ss_pred EEEeCCCCchHHHHHHHHHHhCC
Q 002353 538 VLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~~~~ 560 (932)
|.+.|.||+|||++++.+++.++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 57889999999999999999864
No 469
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=87.08 E-value=0.46 Score=37.12 Aligned_cols=31 Identities=32% Similarity=0.718 Sum_probs=21.9
Q ss_pred EEEcCCCCCccccccccCcccccCCCCCCCCCC
Q 002353 345 KYDCNKCGAILGPFFQNSYSEVKVGSCPECQSK 377 (932)
Q Consensus 345 ~f~C~~C~~~~~~~~q~~~~~~~p~~C~~C~s~ 377 (932)
.|.|.+||+.+.. ++.... ..+..||.|++.
T Consensus 5 ey~C~~Cg~~fe~-~~~~~~-~~~~~CP~Cg~~ 35 (42)
T PF09723_consen 5 EYRCEECGHEFEV-LQSISE-DDPVPCPECGST 35 (42)
T ss_pred EEEeCCCCCEEEE-EEEcCC-CCCCcCCCCCCC
Confidence 5999999988653 333222 457789999984
No 470
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=87.07 E-value=0.46 Score=46.93 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.3
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
+.|+++|++|+|||.|+..+..
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~ 22 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVK 22 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999988764
No 471
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=87.04 E-value=0.47 Score=53.61 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=21.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
|+|++|++|+|||++++++....
T Consensus 146 nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998765
No 472
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.98 E-value=0.54 Score=47.80 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=22.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.+.|+|++|+|||+|++.++...+
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 789999999999999999998754
No 473
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=86.98 E-value=0.78 Score=61.35 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=22.0
Q ss_pred CCCeeeeccccccCcchhhhHHHHHhh
Q 002353 599 DRGICLIDEFDKMNDQDRVSIHEAMEQ 625 (932)
Q Consensus 599 d~GIl~IDE~dkm~~~~~~~L~eamEq 625 (932)
.+.+++|||...++..+...|+.+++.
T Consensus 930 ~~~llIVDEASMV~~~~m~~ll~~~~~ 956 (1623)
T PRK14712 930 SNTLFLLDESSMVGNTDMARAYALIAA 956 (1623)
T ss_pred CCcEEEEEccccccHHHHHHHHHhhhh
Confidence 457999999999998777777777763
No 474
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=86.96 E-value=0.45 Score=46.55 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=18.6
Q ss_pred eEEEeCCCCchHHHHHHHHHH
Q 002353 537 NVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~ 557 (932)
.|+++|+||+|||.|+..+..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998864
No 475
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.92 E-value=0.43 Score=56.08 Aligned_cols=68 Identities=18% Similarity=0.323 Sum_probs=41.7
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCccccccccee----ecCcccchhhhccCceeccCCCeeeecccccc
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAV----HKDPVTREWTLEGGALVLADRGICLIDEFDKM 611 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v----~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm 611 (932)
+.|||.||||+|||.||-.++..+.-++...-.....+|++-+. .+..+... ..+.-.|+++|+++.+
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DA--------YkS~lsiivvDdiErL 610 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDA--------YKSPLSIIVVDDIERL 610 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHh--------hcCcceEEEEcchhhh
Confidence 48999999999999999999988766654422222334443211 11111111 1223369999999876
No 476
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=86.92 E-value=1.8 Score=47.97 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=19.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.++|+|++|+|||+++..++..+
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78899999999999988877643
No 477
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=86.89 E-value=0.52 Score=46.53 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.4
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
+.|+++|+||+|||+|+..+..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~ 24 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQ 24 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHh
Confidence 4899999999999999987654
No 478
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=86.88 E-value=0.45 Score=46.92 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=19.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
+|+++|++|+|||.|++.+...
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~ 22 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPE 22 (162)
T ss_pred CEEEECCCCCCHHHHHHHHccc
Confidence 5899999999999999887653
No 479
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=86.87 E-value=0.5 Score=49.60 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=20.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+|++|+|||+|++.++...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998654
No 480
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=86.85 E-value=0.48 Score=49.46 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+|++|+|||+|++.++...
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999998654
No 481
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=86.83 E-value=1.8 Score=49.92 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
.++|+||+|+|||+++..++..
T Consensus 139 ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999888764
No 482
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=86.83 E-value=0.63 Score=57.47 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=18.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
.+|+.||||||||+++..+...
T Consensus 175 ~~lI~GpPGTGKT~t~~~ii~~ 196 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVELIRQ 196 (637)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999877765543
No 483
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=86.82 E-value=0.67 Score=47.79 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=23.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA 562 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~ 562 (932)
.++|+||+|+||+++++.+.+..|..
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~~~~ 29 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEIPDA 29 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 79999999999999999998886543
No 484
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=86.81 E-value=0.62 Score=49.45 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=19.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
-++|.|+||+|||+|+..++..
T Consensus 25 i~~i~G~~GsGKT~l~~~la~~ 46 (225)
T PRK09361 25 ITQIYGPPGSGKTNICLQLAVE 46 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999877753
No 485
>PRK12338 hypothetical protein; Provisional
Probab=86.80 E-value=0.72 Score=51.90 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=24.8
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
.-+++.|.||+|||++++.++..++-..+
T Consensus 5 ~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 5 YVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 47999999999999999999998765433
No 486
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=86.77 E-value=0.49 Score=49.73 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+|++|+|||+|++.++...
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998654
No 487
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=86.70 E-value=0.49 Score=44.80 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=18.5
Q ss_pred eEEEeCCCCchHHHHHHHHH
Q 002353 537 NVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va 556 (932)
-++|+|++|+|||+|++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 68999999999999999875
No 488
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=86.63 E-value=0.47 Score=50.51 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+|++|+|||+|++.++...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999998654
No 489
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.61 E-value=0.54 Score=49.99 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=20.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+|++|+|||+|++.++...
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999998664
No 490
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=86.60 E-value=0.5 Score=53.37 Aligned_cols=22 Identities=23% Similarity=0.593 Sum_probs=20.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
+++++|++|+|||++++++...
T Consensus 150 ~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 150 NILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999999999999864
No 491
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=86.58 E-value=0.49 Score=49.91 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+|++|+|||+|++.++.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 78999999999999999998654
No 492
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=86.56 E-value=0.56 Score=46.86 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.1
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
+.|+++|++|+|||.|++.+..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~ 23 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVK 23 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999987653
No 493
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=86.53 E-value=0.53 Score=47.03 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=17.5
Q ss_pred eEEEeCCCCchHHHHHHHHH
Q 002353 537 NVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va 556 (932)
+|+++|++|+|||.|+..+.
T Consensus 2 ki~vvG~~~~GKTsli~~~~ 21 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFT 21 (161)
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 69999999999999986554
No 494
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=86.45 E-value=0.52 Score=48.22 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.+.|+|++|+|||+|++.++...+
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 799999999999999999998754
No 495
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=86.45 E-value=0.51 Score=49.82 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=20.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+|++|+|||+|++.++...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999998654
No 496
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=86.42 E-value=1.6 Score=48.76 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=24.5
Q ss_pred CceEEEeCCCCchHHHHHHHHHHhCCCc
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKTGQRA 562 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~~~r~ 562 (932)
.+-||+.|++|+|||++|..++..++-.
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3579999999999999999999987554
No 497
>COG3378 Phage associated DNA primase [General function prediction only]
Probab=86.39 E-value=2.9 Score=50.16 Aligned_cols=136 Identities=18% Similarity=0.135 Sum_probs=67.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcchh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDR 616 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~ 616 (932)
-++|+|+-|+|||.|...|..++.+--.++...+... + ..+.+ ++.-.+. ..-++..+|..+=.-..-
T Consensus 232 ~~~l~G~G~nGKstf~~li~~llG~~n~~s~~~~~~~---~-~~~~~-~~~A~Lv-------g~~~v~~~E~~kg~l~~~ 299 (517)
T COG3378 232 LFWLYGPGGNGKSTFVDLISNLLGRYNVTSAPLTDLE---A-DDRHP-FGLAALV-------GKRLVTVSETEKGRLDDE 299 (517)
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccchhccccHHHhh---h-hccCc-chHHHhh-------CceEEEecCccccccccc
Confidence 6899999999999999999999877533322211111 1 11111 1111111 122334444433111111
Q ss_pred hhHHHHHhhceeeeecc-ceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHH
Q 002353 617 VSIHEAMEQQSISISKA-GIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEML 694 (932)
Q Consensus 617 ~~L~eamEqq~isi~ka-gi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~L 694 (932)
..|..+----.|++..- .-..+......+|.++|-.+... .-+.++.+|+-++-.=.-.+..+.|..+
T Consensus 300 ~~lK~ltgGD~i~a~~K~kd~~~f~p~a~~i~~~N~~P~~~----------~~d~ai~rR~~ivpF~~~f~~~~~d~~l 368 (517)
T COG3378 300 GKLKALTGGDVISAERKRKDFFSFTPNAKLIQATNHPPRIR----------GDDEAIWRRLLIVPFEKQFPPAERDDKL 368 (517)
T ss_pred cceeeeccCCeeeehhccCCceEeccceeEEeecCCCCccc----------ccchhhhheeEEEeccccCCCcccchhh
Confidence 11111111122333221 12344456678899999876333 3467889898766553333333333333
No 498
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=86.36 E-value=0.48 Score=53.96 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
=+.|+||+|||||+++|.||.+
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3779999999999999999854
No 499
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=86.33 E-value=0.6 Score=47.57 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=21.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.+.|+|++|+|||+|++.++...+
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 689999999999999999998754
No 500
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=86.32 E-value=0.64 Score=47.81 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=24.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAV 563 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v 563 (932)
.++|+||+|+||++|++.+.+..|..+
T Consensus 4 ~ivl~Gpsg~GK~~l~~~L~~~~~~~~ 30 (183)
T PF00625_consen 4 PIVLVGPSGSGKSTLAKRLIQEFPDKF 30 (183)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHSTTTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhccccc
Confidence 799999999999999999999877543
Done!