Query 002353
Match_columns 932
No_of_seqs 542 out of 3316
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 22:52:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002353.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002353hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f9v_A Minichromosome maintena 100.0 7E-100 2E-104 910.3 37.2 585 210-825 3-593 (595)
2 3f8t_A Predicted ATPase involv 100.0 5.7E-72 2E-76 635.7 27.5 387 367-826 89-490 (506)
3 1ltl_A DNA replication initiat 100.0 1.6E-52 5.3E-57 456.6 28.0 267 208-498 11-279 (279)
4 2vl6_A SSO MCM N-TER, minichro 100.0 5.8E-51 2E-55 442.1 26.7 254 210-467 9-266 (268)
5 2r44_A Uncharacterized protein 99.9 3.2E-23 1.1E-27 230.1 30.9 277 490-822 15-300 (331)
6 1g8p_A Magnesium-chelatase 38 99.9 1.5E-22 5.2E-27 225.3 21.8 265 503-823 25-326 (350)
7 3nbx_X ATPase RAVA; AAA+ ATPas 99.9 8E-22 2.7E-26 230.6 26.3 270 491-819 11-286 (500)
8 3k1j_A LON protease, ATP-depen 99.8 1.8E-19 6.2E-24 216.4 17.8 239 502-818 41-374 (604)
9 1ojl_A Transcriptional regulat 99.8 1.6E-19 5.5E-24 199.0 11.2 269 536-896 26-304 (304)
10 1ofh_A ATP-dependent HSL prote 99.7 7.3E-17 2.5E-21 175.9 14.6 268 494-817 7-297 (310)
11 2bjv_A PSP operon transcriptio 99.7 5.7E-17 2E-21 174.1 12.3 210 537-812 31-250 (265)
12 1um8_A ATP-dependent CLP prote 99.7 7.8E-17 2.7E-21 182.1 13.0 272 495-815 14-361 (376)
13 3pfi_A Holliday junction ATP-d 99.7 4.3E-16 1.5E-20 172.9 18.6 218 502-818 29-253 (338)
14 1ny5_A Transcriptional regulat 99.7 1.1E-16 3.8E-21 182.1 12.7 214 535-815 160-383 (387)
15 3hws_A ATP-dependent CLP prote 99.7 5E-17 1.7E-21 183.0 7.6 259 496-803 9-326 (363)
16 3dzd_A Transcriptional regulat 99.6 3E-16 1E-20 177.3 11.8 203 535-799 152-361 (368)
17 4fcw_A Chaperone protein CLPB; 99.6 6.6E-16 2.2E-20 169.0 12.3 244 493-798 8-277 (311)
18 1hqc_A RUVB; extended AAA-ATPa 99.6 1E-15 3.5E-20 168.4 13.5 271 502-900 12-291 (324)
19 3m6a_A ATP-dependent protease 99.5 9.4E-15 3.2E-19 173.2 11.6 241 498-817 77-339 (543)
20 3pvs_A Replication-associated 99.5 6.8E-14 2.3E-18 161.9 17.5 212 502-817 26-242 (447)
21 3syl_A Protein CBBX; photosynt 99.5 2.6E-14 8.7E-19 156.3 12.8 240 494-812 23-279 (309)
22 1r6b_X CLPA protein; AAA+, N-t 99.5 2.1E-13 7.1E-18 167.9 18.1 238 493-796 449-712 (758)
23 4b4t_J 26S protease regulatory 99.5 2.6E-13 8.9E-18 153.6 16.6 192 537-821 184-391 (405)
24 3h4m_A Proteasome-activating n 99.5 3.2E-13 1.1E-17 146.0 16.4 230 503-822 18-261 (285)
25 3pxi_A Negative regulator of g 99.5 1.7E-13 5.9E-18 168.7 15.3 231 496-794 485-719 (758)
26 3eie_A Vacuolar protein sortin 99.5 1.7E-13 5.8E-18 151.7 13.8 162 502-697 18-195 (322)
27 3uk6_A RUVB-like 2; hexameric 99.5 2.2E-13 7.5E-18 152.6 14.2 139 601-819 191-330 (368)
28 4b4t_I 26S protease regulatory 99.5 5.7E-13 2E-17 151.3 16.4 193 537-822 218-426 (437)
29 1lv7_A FTSH; alpha/beta domain 99.4 2.1E-12 7.2E-17 137.8 18.7 219 502-820 12-253 (257)
30 4b4t_H 26S protease regulatory 99.4 1E-12 3.4E-17 150.7 16.4 193 537-822 245-453 (467)
31 4b4t_K 26S protease regulatory 99.4 9.6E-13 3.3E-17 150.7 16.1 187 537-818 208-413 (428)
32 3d8b_A Fidgetin-like protein 1 99.4 3.8E-12 1.3E-16 143.1 20.2 163 502-697 84-262 (357)
33 3vfd_A Spastin; ATPase, microt 99.4 2.8E-12 9.4E-17 145.7 19.1 164 502-697 115-293 (389)
34 4b4t_L 26S protease subunit RP 99.4 1.2E-12 4.3E-17 150.1 15.5 190 537-822 217-425 (437)
35 2qp9_X Vacuolar protein sortin 99.4 1.1E-12 3.7E-17 147.4 14.5 159 502-694 51-225 (355)
36 4b4t_M 26S protease regulatory 99.4 1.2E-12 4E-17 150.2 14.6 188 537-820 217-423 (434)
37 3b9p_A CG5977-PA, isoform A; A 99.4 3.6E-12 1.2E-16 138.6 17.5 160 502-689 21-192 (297)
38 2qz4_A Paraplegin; AAA+, SPG7, 99.4 9.3E-13 3.2E-17 140.1 11.3 227 502-822 6-252 (262)
39 1in4_A RUVB, holliday junction 99.4 1.1E-11 3.6E-16 138.1 19.2 230 492-820 11-251 (334)
40 1xwi_A SKD1 protein; VPS4B, AA 99.4 6.3E-12 2.1E-16 139.4 17.3 163 502-695 12-188 (322)
41 2chg_A Replication factor C sm 99.4 3.3E-12 1.1E-16 130.7 13.7 203 501-817 16-224 (226)
42 1qvr_A CLPB protein; coiled co 99.4 2.7E-12 9.3E-17 160.0 14.2 235 499-796 555-816 (854)
43 1sxj_D Activator 1 41 kDa subu 99.3 2.3E-11 7.8E-16 135.0 17.4 208 501-817 36-261 (353)
44 1g41_A Heat shock protein HSLU 99.3 3.4E-11 1.2E-15 138.3 18.9 140 599-794 250-402 (444)
45 2zan_A Vacuolar protein sortin 99.3 1.9E-11 6.6E-16 141.3 15.8 163 502-695 134-310 (444)
46 2c9o_A RUVB-like 1; hexameric 99.2 6.4E-11 2.2E-15 137.4 16.7 144 601-822 297-440 (456)
47 2ce7_A Cell division protein F 99.2 7.9E-11 2.7E-15 136.9 16.9 186 537-819 51-256 (476)
48 3hu3_A Transitional endoplasmi 99.2 6.4E-11 2.2E-15 138.4 16.0 158 503-693 205-379 (489)
49 3cf0_A Transitional endoplasmi 99.2 1.8E-11 6.2E-16 134.2 10.5 164 503-699 16-199 (301)
50 2chq_A Replication factor C sm 99.2 2.9E-10 1E-14 123.9 20.1 200 502-816 17-223 (319)
51 1iqp_A RFCS; clamp loader, ext 99.2 9E-11 3.1E-15 128.4 15.8 134 501-678 24-163 (327)
52 2r62_A Cell division protease 99.2 2.3E-12 7.7E-17 138.2 2.3 187 537-818 46-252 (268)
53 2dhr_A FTSH; AAA+ protein, hex 99.2 7.1E-11 2.4E-15 138.0 14.4 186 537-821 66-273 (499)
54 3u61_B DNA polymerase accessor 99.2 2.6E-10 8.8E-15 125.6 18.0 142 502-689 26-168 (324)
55 3pxg_A Negative regulator of g 99.2 2.9E-10 9.8E-15 132.4 19.3 221 503-796 181-407 (468)
56 3n70_A Transport activator; si 99.2 6E-12 2.1E-16 123.0 3.3 111 537-678 26-136 (145)
57 3co5_A Putative two-component 99.2 5.8E-12 2E-16 122.9 2.5 108 537-680 29-136 (143)
58 3bos_A Putative DNA replicatio 99.1 8E-10 2.7E-14 115.0 18.0 180 537-817 54-241 (242)
59 2v1u_A Cell division control p 99.1 2.7E-10 9.1E-15 127.4 14.6 232 502-820 19-277 (387)
60 1njg_A DNA polymerase III subu 99.1 4.7E-10 1.6E-14 115.8 14.8 208 501-816 22-248 (250)
61 3t15_A Ribulose bisphosphate c 99.1 2.4E-11 8.1E-16 132.9 2.8 143 533-699 34-198 (293)
62 1jr3_A DNA polymerase III subu 99.1 1.1E-08 3.7E-13 114.2 23.4 208 502-816 16-241 (373)
63 1ixz_A ATP-dependent metallopr 99.1 8.9E-10 3E-14 117.1 13.4 181 537-816 51-253 (254)
64 2qby_B CDC6 homolog 3, cell di 99.0 2.5E-09 8.5E-14 119.9 17.3 224 502-820 20-271 (384)
65 1sxj_C Activator 1 40 kDa subu 99.0 4.8E-09 1.6E-13 116.6 18.7 133 501-677 24-162 (340)
66 1d2n_A N-ethylmaleimide-sensit 99.0 2.2E-10 7.6E-15 123.2 6.8 123 537-682 66-195 (272)
67 1fnn_A CDC6P, cell division co 99.0 2.9E-09 9.8E-14 119.4 15.9 237 502-820 17-275 (389)
68 1iy2_A ATP-dependent metallopr 99.0 1.2E-09 4E-14 118.1 12.3 184 537-816 75-277 (278)
69 3pxi_A Negative regulator of g 99.0 3.4E-09 1.1E-13 130.5 17.7 219 502-793 180-404 (758)
70 2z4s_A Chromosomal replication 99.0 2E-09 6.9E-14 124.3 13.4 190 537-819 132-332 (440)
71 1sxj_B Activator 1 37 kDa subu 98.9 1E-08 3.4E-13 111.9 16.9 133 502-677 21-159 (323)
72 4akg_A Glutathione S-transfera 98.9 3E-09 1E-13 144.0 14.8 153 536-703 1268-1435(2695)
73 1sxj_E Activator 1 40 kDa subu 98.9 1.7E-08 6E-13 112.0 18.6 141 503-682 15-190 (354)
74 1l8q_A Chromosomal replication 98.9 5.1E-09 1.8E-13 115.4 13.8 118 537-682 39-164 (324)
75 2x8a_A Nuclear valosin-contain 98.9 9.5E-09 3.3E-13 111.2 14.1 159 503-698 11-190 (274)
76 1r6b_X CLPA protein; AAA+, N-t 98.9 1.7E-08 5.8E-13 124.2 17.1 151 503-697 187-360 (758)
77 3cf2_A TER ATPase, transitiona 98.9 3.8E-09 1.3E-13 129.3 10.0 135 535-706 238-388 (806)
78 3vkg_A Dynein heavy chain, cyt 98.8 2.3E-08 7.8E-13 136.2 16.8 152 536-703 1305-1473(3245)
79 3cf2_A TER ATPase, transitiona 98.8 4.3E-09 1.5E-13 128.9 8.5 168 503-707 478-665 (806)
80 2qby_A CDC6 homolog 1, cell di 98.8 6.1E-08 2.1E-12 108.0 17.1 228 502-820 20-273 (386)
81 1qvr_A CLPB protein; coiled co 98.8 1.9E-08 6.4E-13 125.5 13.3 215 502-790 170-408 (854)
82 4akg_A Glutathione S-transfera 98.8 1.1E-07 3.6E-12 129.1 20.0 188 537-802 647-843 (2695)
83 1sxj_A Activator 1 95 kDa subu 98.8 1.4E-07 4.6E-12 111.1 18.5 123 503-625 40-177 (516)
84 1jbk_A CLPB protein; beta barr 98.7 7.1E-09 2.4E-13 103.2 5.6 150 494-678 14-179 (195)
85 2p65_A Hypothetical protein PF 98.7 3.8E-09 1.3E-13 105.1 3.0 150 496-680 16-182 (187)
86 3te6_A Regulatory protein SIR3 98.6 4E-07 1.4E-11 100.5 14.1 143 537-700 47-212 (318)
87 1ypw_A Transitional endoplasmi 98.4 1.9E-08 6.4E-13 124.5 -1.0 167 502-705 477-663 (806)
88 1a5t_A Delta prime, HOLB; zinc 98.4 2.7E-06 9.2E-11 94.4 14.0 134 507-678 7-161 (334)
89 2gno_A DNA polymerase III, gam 98.3 2.7E-06 9.3E-11 93.4 11.5 137 506-686 1-140 (305)
90 1ypw_A Transitional endoplasmi 98.2 1.2E-06 4.1E-11 108.4 8.0 128 535-696 238-382 (806)
91 3vkg_A Dynein heavy chain, cyt 98.2 1E-05 3.4E-10 110.8 17.1 188 537-802 606-803 (3245)
92 2kjq_A DNAA-related protein; s 98.1 4.9E-06 1.7E-10 81.6 7.1 101 537-679 38-142 (149)
93 1w5s_A Origin recognition comp 98.0 2.1E-05 7E-10 88.7 12.7 58 755-819 236-293 (412)
94 3ec2_A DNA replication protein 97.8 6.3E-06 2.1E-10 82.6 1.6 98 537-653 40-144 (180)
95 1tue_A Replication protein E1; 97.7 4.7E-05 1.6E-09 78.5 7.8 113 537-681 60-176 (212)
96 2qgz_A Helicase loader, putati 97.6 6.3E-06 2.2E-10 90.5 -0.4 122 537-677 154-286 (308)
97 2w58_A DNAI, primosome compone 97.5 2E-05 6.7E-10 80.3 1.3 24 537-560 56-79 (202)
98 1u0j_A DNA replication protein 97.5 0.00043 1.5E-08 74.2 11.2 122 537-681 106-227 (267)
99 2r2a_A Uncharacterized protein 97.5 0.00037 1.3E-08 71.6 10.0 122 537-684 7-152 (199)
100 1jr3_D DNA polymerase III, del 96.8 0.014 4.8E-07 64.2 14.8 185 537-819 20-209 (343)
101 2orw_A Thymidine kinase; TMTK, 96.6 0.0021 7.3E-08 64.9 6.0 59 600-682 77-136 (184)
102 2qen_A Walker-type ATPase; unk 96.6 0.0077 2.6E-07 65.6 10.6 49 502-565 12-60 (350)
103 1ye8_A Protein THEP1, hypothet 95.7 0.0035 1.2E-07 63.0 2.0 24 537-560 2-25 (178)
104 3upu_A ATP-dependent DNA helic 95.5 0.012 4.1E-07 67.9 6.1 23 537-559 47-69 (459)
105 1w36_D RECD, exodeoxyribonucle 95.2 0.032 1.1E-06 66.7 8.7 37 507-558 151-187 (608)
106 2r8r_A Sensor protein; KDPD, P 95.2 0.017 5.8E-07 60.4 5.4 141 533-687 4-166 (228)
107 3e1s_A Exodeoxyribonuclease V, 95.2 0.013 4.5E-07 69.6 5.1 23 537-559 206-228 (574)
108 2vhj_A Ntpase P4, P4; non- hyd 95.1 0.01 3.5E-07 65.3 3.6 22 537-558 125-146 (331)
109 1qhx_A CPT, protein (chloramph 94.5 0.025 8.5E-07 55.6 4.2 28 537-564 5-32 (178)
110 1kag_A SKI, shikimate kinase I 94.0 0.033 1.1E-06 54.5 4.0 25 537-561 6-30 (173)
111 3trf_A Shikimate kinase, SK; a 93.9 0.031 1.1E-06 55.3 3.6 28 537-564 7-34 (185)
112 1zuh_A Shikimate kinase; alpha 93.7 0.039 1.3E-06 53.9 3.7 29 537-565 9-37 (168)
113 1via_A Shikimate kinase; struc 93.6 0.036 1.2E-06 54.6 3.4 28 537-564 6-33 (175)
114 3kb2_A SPBC2 prophage-derived 93.6 0.043 1.5E-06 53.3 3.8 27 537-563 3-29 (173)
115 3dl0_A Adenylate kinase; phosp 93.5 0.041 1.4E-06 56.1 3.8 29 537-565 2-30 (216)
116 3vaa_A Shikimate kinase, SK; s 93.4 0.042 1.4E-06 55.5 3.6 28 537-564 27-54 (199)
117 1y63_A LMAJ004144AAA protein; 93.4 0.052 1.8E-06 54.2 4.2 22 537-558 12-33 (184)
118 3iij_A Coilin-interacting nucl 93.3 0.036 1.2E-06 54.8 2.9 28 537-564 13-40 (180)
119 3lw7_A Adenylate kinase relate 93.2 0.044 1.5E-06 53.0 3.3 27 537-564 3-29 (179)
120 2p5t_B PEZT; postsegregational 93.2 0.082 2.8E-06 55.7 5.6 24 537-560 34-57 (253)
121 1gvn_B Zeta; postsegregational 93.1 0.096 3.3E-06 56.5 5.9 24 537-560 35-58 (287)
122 2fz4_A DNA repair protein RAD2 93.0 0.21 7.3E-06 52.0 8.4 23 537-559 110-132 (237)
123 1ly1_A Polynucleotide kinase; 92.9 0.049 1.7E-06 53.3 3.1 21 537-557 4-24 (181)
124 2cdn_A Adenylate kinase; phosp 92.9 0.071 2.4E-06 53.7 4.3 29 536-564 21-49 (201)
125 3fb4_A Adenylate kinase; psych 92.9 0.049 1.7E-06 55.4 3.1 28 537-564 2-29 (216)
126 2iyv_A Shikimate kinase, SK; t 92.8 0.059 2E-06 53.4 3.5 28 537-564 4-31 (184)
127 2gmg_A Hypothetical protein PF 92.6 0.062 2.1E-06 48.9 3.0 32 341-378 63-94 (105)
128 3cm0_A Adenylate kinase; ATP-b 92.5 0.054 1.8E-06 53.6 2.8 26 537-562 6-31 (186)
129 2bdt_A BH3686; alpha-beta prot 92.5 0.07 2.4E-06 53.1 3.6 24 537-560 4-27 (189)
130 1e6c_A Shikimate kinase; phosp 92.5 0.069 2.3E-06 52.1 3.4 28 537-564 4-31 (173)
131 3tr0_A Guanylate kinase, GMP k 92.4 0.085 2.9E-06 52.9 4.2 24 537-560 9-32 (205)
132 2b8t_A Thymidine kinase; deoxy 92.4 0.19 6.4E-06 52.3 6.8 22 537-558 14-35 (223)
133 1aky_A Adenylate kinase; ATP:A 92.4 0.064 2.2E-06 54.9 3.3 29 536-564 5-33 (220)
134 2vli_A Antibiotic resistance p 92.4 0.067 2.3E-06 52.6 3.3 28 537-564 7-34 (183)
135 2rhm_A Putative kinase; P-loop 92.3 0.071 2.4E-06 52.9 3.3 25 537-561 7-31 (193)
136 3t61_A Gluconokinase; PSI-biol 92.2 0.08 2.7E-06 53.4 3.7 25 537-561 20-44 (202)
137 2pt5_A Shikimate kinase, SK; a 92.2 0.084 2.9E-06 51.2 3.6 28 537-564 2-29 (168)
138 1tev_A UMP-CMP kinase; ploop, 92.1 0.066 2.3E-06 53.0 2.9 27 537-563 5-31 (196)
139 3sr0_A Adenylate kinase; phosp 92.1 0.067 2.3E-06 55.0 3.0 29 537-565 2-30 (206)
140 2ze6_A Isopentenyl transferase 92.0 0.086 2.9E-06 55.7 3.8 28 537-564 3-30 (253)
141 1knq_A Gluconate kinase; ALFA/ 92.0 0.084 2.9E-06 51.7 3.4 24 537-560 10-33 (175)
142 1kht_A Adenylate kinase; phosp 92.0 0.058 2E-06 53.3 2.3 24 537-560 5-28 (192)
143 1cke_A CK, MSSA, protein (cyti 91.9 0.074 2.5E-06 54.4 3.0 29 537-565 7-35 (227)
144 2c95_A Adenylate kinase 1; tra 91.8 0.068 2.3E-06 53.2 2.6 28 537-564 11-38 (196)
145 1e4v_A Adenylate kinase; trans 91.7 0.077 2.6E-06 54.1 2.8 29 537-565 2-30 (214)
146 4eun_A Thermoresistant glucoki 91.7 0.091 3.1E-06 53.0 3.3 24 537-560 31-54 (200)
147 1zp6_A Hypothetical protein AT 91.7 0.074 2.5E-06 52.8 2.6 23 537-559 11-33 (191)
148 1zd8_A GTP:AMP phosphotransfer 91.7 0.091 3.1E-06 54.1 3.4 28 537-564 9-36 (227)
149 2bwj_A Adenylate kinase 5; pho 91.6 0.074 2.5E-06 53.0 2.6 28 537-564 14-41 (199)
150 1ak2_A Adenylate kinase isoenz 91.6 0.083 2.8E-06 54.7 3.0 29 536-564 17-45 (233)
151 1nks_A Adenylate kinase; therm 91.5 0.083 2.8E-06 52.2 2.8 24 537-560 3-26 (194)
152 1kgd_A CASK, peripheral plasma 91.5 0.1 3.5E-06 51.8 3.5 24 537-560 7-30 (180)
153 3tqc_A Pantothenate kinase; bi 91.4 0.12 4.1E-06 56.8 4.1 79 473-560 33-117 (321)
154 3tlx_A Adenylate kinase 2; str 91.4 0.098 3.3E-06 54.8 3.3 29 537-565 31-59 (243)
155 1htw_A HI0065; nucleotide-bind 91.3 0.15 5.3E-06 50.0 4.4 24 537-560 35-58 (158)
156 1ukz_A Uridylate kinase; trans 91.2 0.11 3.8E-06 52.2 3.5 28 537-564 17-44 (203)
157 1qf9_A UMP/CMP kinase, protein 91.2 0.1 3.4E-06 51.6 3.0 28 537-564 8-35 (194)
158 2qor_A Guanylate kinase; phosp 91.2 0.13 4.4E-06 52.1 3.9 24 537-560 14-37 (204)
159 2jaq_A Deoxyguanosine kinase; 91.2 0.11 3.9E-06 51.7 3.5 25 537-561 2-26 (205)
160 3be4_A Adenylate kinase; malar 91.2 0.091 3.1E-06 53.8 2.8 28 537-564 7-34 (217)
161 3umf_A Adenylate kinase; rossm 91.0 0.092 3.2E-06 54.4 2.7 26 537-562 31-56 (217)
162 2xb4_A Adenylate kinase; ATP-b 90.9 0.11 3.6E-06 53.7 3.0 28 537-564 2-29 (223)
163 3jvv_A Twitching mobility prot 90.8 0.19 6.6E-06 56.0 5.1 24 537-560 125-148 (356)
164 1ex7_A Guanylate kinase; subst 90.7 0.17 6E-06 51.1 4.3 27 537-563 3-29 (186)
165 2bbw_A Adenylate kinase 4, AK4 90.7 0.1 3.5E-06 54.5 2.7 23 537-559 29-51 (246)
166 1zak_A Adenylate kinase; ATP:A 90.6 0.09 3.1E-06 53.9 2.0 25 537-561 7-31 (222)
167 2plr_A DTMP kinase, probable t 90.5 0.12 4E-06 52.0 2.9 24 537-560 6-29 (213)
168 3uie_A Adenylyl-sulfate kinase 90.5 0.13 4.5E-06 51.8 3.2 24 537-560 27-50 (200)
169 3nwj_A ATSK2; P loop, shikimat 90.4 0.14 4.9E-06 54.1 3.5 29 537-565 50-78 (250)
170 1upt_A ARL1, ADP-ribosylation 90.4 0.17 5.7E-06 48.6 3.7 25 533-557 5-29 (171)
171 3vkw_A Replicase large subunit 90.3 0.086 2.9E-06 60.4 1.7 85 537-622 163-257 (446)
172 3tau_A Guanylate kinase, GMP k 90.2 0.14 4.8E-06 52.1 3.2 25 537-561 10-34 (208)
173 3clv_A RAB5 protein, putative; 90.2 0.18 6.2E-06 49.5 3.9 26 533-558 5-30 (208)
174 2if2_A Dephospho-COA kinase; a 90.2 0.17 5.8E-06 50.9 3.7 24 537-561 3-26 (204)
175 2j41_A Guanylate kinase; GMP, 89.9 0.18 6.1E-06 50.5 3.6 23 537-559 8-30 (207)
176 4a74_A DNA repair and recombin 89.9 0.22 7.5E-06 50.6 4.3 23 537-559 27-49 (231)
177 3r20_A Cytidylate kinase; stru 89.8 0.16 5.4E-06 53.2 3.2 30 536-565 10-39 (233)
178 2pbr_A DTMP kinase, thymidylat 89.7 0.19 6.4E-06 49.7 3.5 23 537-559 2-24 (195)
179 3t1o_A Gliding protein MGLA; G 89.6 0.19 6.5E-06 49.3 3.5 25 535-559 14-38 (198)
180 1z2a_A RAS-related protein RAB 89.6 0.18 6.2E-06 48.0 3.2 23 535-557 5-27 (168)
181 2fna_A Conserved hypothetical 89.5 0.26 8.8E-06 53.4 4.8 42 502-559 13-54 (357)
182 2z0h_A DTMP kinase, thymidylat 89.5 0.2 6.7E-06 49.8 3.5 23 537-559 2-24 (197)
183 3q85_A GTP-binding protein REM 89.4 0.17 5.9E-06 48.4 3.0 21 536-556 3-23 (169)
184 1kao_A RAP2A; GTP-binding prot 89.4 0.19 6.6E-06 47.6 3.3 22 536-557 4-25 (167)
185 3a00_A Guanylate kinase, GMP k 89.3 0.19 6.5E-06 50.1 3.2 25 537-561 3-27 (186)
186 3a4m_A L-seryl-tRNA(SEC) kinas 89.2 0.24 8.2E-06 52.3 4.1 22 537-558 6-27 (260)
187 1jjv_A Dephospho-COA kinase; P 89.2 0.21 7.2E-06 50.3 3.5 21 537-557 4-24 (206)
188 1z0j_A RAB-22, RAS-related pro 89.2 0.2 7E-06 47.8 3.3 23 536-558 7-29 (170)
189 3ake_A Cytidylate kinase; CMP 89.2 0.18 6.2E-06 50.5 3.0 30 537-566 4-33 (208)
190 4e22_A Cytidylate kinase; P-lo 89.1 0.2 7E-06 52.6 3.5 30 537-566 29-58 (252)
191 1ek0_A Protein (GTP-binding pr 89.1 0.21 7.1E-06 47.6 3.2 23 536-558 4-26 (170)
192 1svm_A Large T antigen; AAA+ f 89.0 0.2 6.9E-06 56.3 3.5 24 537-560 171-194 (377)
193 1z08_A RAS-related protein RAB 89.0 0.21 7.2E-06 47.8 3.2 24 535-558 6-29 (170)
194 1u8z_A RAS-related protein RAL 88.9 0.22 7.4E-06 47.3 3.2 23 536-558 5-27 (168)
195 2nzj_A GTP-binding protein REM 88.9 0.21 7.1E-06 48.1 3.1 22 536-557 5-26 (175)
196 1n0w_A DNA repair protein RAD5 88.8 0.24 8.1E-06 50.9 3.6 22 537-558 26-47 (243)
197 1r8s_A ADP-ribosylation factor 88.8 0.22 7.6E-06 47.4 3.2 23 536-558 1-23 (164)
198 1ky3_A GTP-binding protein YPT 88.8 0.22 7.5E-06 48.2 3.2 25 534-558 7-31 (182)
199 2wwf_A Thymidilate kinase, put 88.8 0.19 6.4E-06 50.7 2.8 23 537-559 12-34 (212)
200 3ney_A 55 kDa erythrocyte memb 88.8 0.28 9.7E-06 50.0 4.1 25 537-561 21-45 (197)
201 2erx_A GTP-binding protein DI- 88.7 0.21 7.3E-06 47.7 3.0 22 536-557 4-25 (172)
202 1g16_A RAS-related protein SEC 88.7 0.21 7E-06 47.7 2.9 23 536-558 4-26 (170)
203 1wms_A RAB-9, RAB9, RAS-relate 88.7 0.23 7.8E-06 48.0 3.3 24 535-558 7-30 (177)
204 1c1y_A RAS-related protein RAP 88.7 0.23 7.8E-06 47.3 3.2 22 536-557 4-25 (167)
205 2yvu_A Probable adenylyl-sulfa 88.6 0.27 9.3E-06 48.7 3.8 25 536-560 14-38 (186)
206 2v54_A DTMP kinase, thymidylat 88.6 0.26 9E-06 49.2 3.7 23 537-559 6-28 (204)
207 1lvg_A Guanylate kinase, GMP k 88.6 0.2 6.9E-06 50.6 2.9 24 537-560 6-29 (198)
208 1r2q_A RAS-related protein RAB 88.6 0.24 8.1E-06 47.2 3.2 23 535-557 6-28 (170)
209 3bc1_A RAS-related protein RAB 88.5 0.23 8E-06 48.5 3.2 24 535-558 11-34 (195)
210 2f9l_A RAB11B, member RAS onco 88.5 0.23 7.9E-06 49.5 3.2 24 536-559 6-29 (199)
211 3q72_A GTP-binding protein RAD 88.5 0.2 6.7E-06 47.9 2.6 21 536-556 3-23 (166)
212 3cmw_A Protein RECA, recombina 88.5 0.36 1.2E-05 63.7 5.7 23 537-559 1084-1106(1706)
213 3c8u_A Fructokinase; YP_612366 88.4 0.21 7.2E-06 50.7 2.9 24 537-560 24-47 (208)
214 2ce2_X GTPase HRAS; signaling 88.4 0.22 7.7E-06 47.0 2.9 23 536-558 4-26 (166)
215 4gp7_A Metallophosphoesterase; 88.4 0.19 6.5E-06 49.5 2.4 19 537-555 11-29 (171)
216 1znw_A Guanylate kinase, GMP k 88.3 0.29 9.8E-06 49.6 3.8 24 537-560 22-45 (207)
217 3lxx_A GTPase IMAP family memb 88.3 0.46 1.6E-05 49.1 5.4 25 534-558 28-52 (239)
218 2dyk_A GTP-binding protein; GT 88.3 0.26 8.8E-06 46.7 3.3 22 537-558 3-24 (161)
219 1z0f_A RAB14, member RAS oncog 88.3 0.25 8.6E-06 47.6 3.2 24 535-558 15-38 (179)
220 2w0m_A SSO2452; RECA, SSPF, un 88.2 0.24 8.2E-06 50.2 3.2 22 537-558 25-46 (235)
221 1nrj_B SR-beta, signal recogni 88.2 0.27 9.3E-06 49.6 3.5 25 535-559 12-36 (218)
222 2ehv_A Hypothetical protein PH 88.2 0.22 7.6E-06 51.3 2.9 20 537-556 32-51 (251)
223 1uf9_A TT1252 protein; P-loop, 88.2 0.32 1.1E-05 48.5 4.0 27 537-564 10-36 (203)
224 3sop_A Neuronal-specific septi 88.2 0.21 7.3E-06 53.3 2.8 24 536-559 3-26 (270)
225 1nn5_A Similar to deoxythymidy 88.1 0.22 7.6E-06 50.1 2.8 23 537-559 11-33 (215)
226 3crm_A TRNA delta(2)-isopenten 88.0 0.3 1E-05 53.7 3.9 28 537-564 7-34 (323)
227 2ged_A SR-beta, signal recogni 88.0 0.3 1E-05 48.1 3.6 25 535-559 48-72 (193)
228 2hxs_A RAB-26, RAS-related pro 88.0 0.26 8.8E-06 47.6 3.1 23 535-557 6-28 (178)
229 1z6g_A Guanylate kinase; struc 87.9 0.28 9.6E-06 50.4 3.4 24 537-560 25-48 (218)
230 2oil_A CATX-8, RAS-related pro 87.8 0.27 9.4E-06 48.4 3.2 24 535-558 25-48 (193)
231 3tw8_B RAS-related protein RAB 87.8 0.25 8.7E-06 47.6 2.9 22 535-556 9-30 (181)
232 1s96_A Guanylate kinase, GMP k 87.8 0.29 9.9E-06 50.6 3.4 24 537-560 18-41 (219)
233 3e7l_A Transcriptional regulat 87.7 0.19 6.5E-06 41.4 1.7 51 846-900 9-59 (63)
234 2gf0_A GTP-binding protein DI- 87.7 0.29 9.8E-06 48.3 3.3 24 534-557 7-30 (199)
235 2zej_A Dardarin, leucine-rich 87.7 0.26 8.9E-06 48.5 3.0 22 536-557 3-24 (184)
236 2cvh_A DNA repair and recombin 87.6 0.27 9.2E-06 49.6 3.1 21 537-557 22-42 (220)
237 2g6b_A RAS-related protein RAB 87.5 0.3 1E-05 47.3 3.2 25 534-558 9-33 (180)
238 2efe_B Small GTP-binding prote 87.5 0.3 1E-05 47.3 3.2 24 535-558 12-35 (181)
239 2pez_A Bifunctional 3'-phospho 87.5 0.3 1E-05 48.1 3.2 23 537-559 7-29 (179)
240 1ltq_A Polynucleotide kinase; 87.5 0.37 1.3E-05 51.5 4.2 23 537-559 4-26 (301)
241 2fn4_A P23, RAS-related protei 87.4 0.28 9.6E-06 47.3 3.0 24 535-558 9-32 (181)
242 2qt1_A Nicotinamide riboside k 87.4 0.34 1.2E-05 48.8 3.7 24 537-560 23-46 (207)
243 2xtp_A GTPase IMAP family memb 87.4 0.3 1E-05 51.1 3.4 24 534-557 21-44 (260)
244 4dsu_A GTPase KRAS, isoform 2B 87.3 0.31 1.1E-05 47.4 3.3 23 536-558 5-27 (189)
245 2y8e_A RAB-protein 6, GH09086P 87.3 0.28 9.7E-06 47.2 2.9 22 536-557 15-36 (179)
246 3kkq_A RAS-related protein M-R 87.3 0.31 1.1E-05 47.5 3.2 23 535-557 18-40 (183)
247 2iwr_A Centaurin gamma 1; ANK 87.3 0.27 9.2E-06 47.7 2.7 22 536-557 8-29 (178)
248 2h92_A Cytidylate kinase; ross 87.2 0.35 1.2E-05 49.1 3.7 30 537-566 5-34 (219)
249 2v9p_A Replication protein E1; 87.2 0.39 1.3E-05 52.3 4.2 23 537-559 128-150 (305)
250 2lkc_A Translation initiation 87.2 0.35 1.2E-05 46.6 3.5 24 534-557 7-30 (178)
251 2wji_A Ferrous iron transport 87.2 0.3 1E-05 47.1 3.0 22 536-557 4-25 (165)
252 1mh1_A RAC1; GTP-binding, GTPa 87.1 0.32 1.1E-05 47.2 3.2 22 536-557 6-27 (186)
253 3asz_A Uridine kinase; cytidin 87.1 0.28 9.7E-06 49.5 2.9 24 537-560 8-31 (211)
254 1uj2_A Uridine-cytidine kinase 87.0 0.37 1.3E-05 50.5 3.8 26 536-561 23-48 (252)
255 1zd9_A ADP-ribosylation factor 86.9 0.3 1E-05 48.1 2.9 27 532-558 19-45 (188)
256 1oix_A RAS-related protein RAB 86.9 0.31 1.1E-05 48.5 3.0 24 536-559 30-53 (191)
257 2a9k_A RAS-related protein RAL 86.8 0.34 1.2E-05 47.0 3.2 24 535-558 18-41 (187)
258 1m7b_A RND3/RHOE small GTP-bin 86.8 0.31 1.1E-05 47.8 2.9 24 535-558 7-30 (184)
259 2atv_A RERG, RAS-like estrogen 86.8 0.35 1.2E-05 47.9 3.4 24 535-558 28-51 (196)
260 3bwd_D RAC-like GTP-binding pr 86.8 0.36 1.2E-05 46.8 3.3 23 535-557 8-30 (182)
261 3con_A GTPase NRAS; structural 86.7 0.34 1.2E-05 47.5 3.2 24 535-558 21-44 (190)
262 2bme_A RAB4A, RAS-related prot 86.7 0.32 1.1E-05 47.4 2.9 24 535-558 10-33 (186)
263 1ksh_A ARF-like protein 2; sma 86.7 0.33 1.1E-05 47.4 3.1 24 534-557 17-40 (186)
264 3c5c_A RAS-like protein 12; GD 86.7 0.35 1.2E-05 47.8 3.3 23 535-557 21-43 (187)
265 2cxx_A Probable GTP-binding pr 86.7 0.28 9.7E-06 47.9 2.6 22 536-557 2-23 (190)
266 3b85_A Phosphate starvation-in 86.7 0.4 1.4E-05 49.2 3.7 22 537-558 24-45 (208)
267 2gf9_A RAS-related protein RAB 86.6 0.35 1.2E-05 47.5 3.2 24 535-558 22-45 (189)
268 2ga8_A Hypothetical 39.9 kDa p 86.6 0.58 2E-05 52.0 5.2 26 537-562 26-51 (359)
269 1pzn_A RAD51, DNA repair and r 86.6 0.53 1.8E-05 52.1 5.0 23 537-559 133-155 (349)
270 3reg_A RHO-like small GTPase; 86.5 0.36 1.2E-05 47.7 3.2 25 534-558 22-46 (194)
271 3ihw_A Centg3; RAS, centaurin, 86.5 0.36 1.2E-05 47.7 3.2 24 534-557 19-42 (184)
272 3oes_A GTPase rhebl1; small GT 86.5 0.32 1.1E-05 48.5 2.8 27 532-558 21-47 (201)
273 2bov_A RAla, RAS-related prote 86.4 0.37 1.2E-05 47.8 3.2 25 534-558 13-37 (206)
274 2gj8_A MNME, tRNA modification 86.4 0.33 1.1E-05 47.3 2.9 23 536-558 5-27 (172)
275 3tkl_A RAS-related protein RAB 86.4 0.37 1.3E-05 47.4 3.2 23 535-557 16-38 (196)
276 1z06_A RAS-related protein RAB 86.4 0.38 1.3E-05 47.3 3.3 23 535-557 20-42 (189)
277 1m7g_A Adenylylsulfate kinase; 86.3 0.36 1.2E-05 49.0 3.2 24 537-560 27-50 (211)
278 2zts_A Putative uncharacterize 86.3 0.42 1.4E-05 49.1 3.7 20 537-556 32-51 (251)
279 2grj_A Dephospho-COA kinase; T 86.3 0.4 1.4E-05 48.5 3.4 29 536-564 13-41 (192)
280 1vht_A Dephospho-COA kinase; s 86.3 0.44 1.5E-05 48.4 3.8 26 537-563 6-31 (218)
281 1vg8_A RAS-related protein RAB 86.3 0.38 1.3E-05 47.8 3.3 24 535-558 8-31 (207)
282 1x3s_A RAS-related protein RAB 86.2 0.38 1.3E-05 47.2 3.2 24 535-558 15-38 (195)
283 3lxw_A GTPase IMAP family memb 86.2 0.69 2.4E-05 48.3 5.4 26 533-558 19-44 (247)
284 2fg5_A RAB-22B, RAS-related pr 86.2 0.35 1.2E-05 47.8 3.0 24 535-558 23-46 (192)
285 2wjg_A FEOB, ferrous iron tran 86.2 0.37 1.3E-05 47.1 3.0 22 536-557 8-29 (188)
286 4b3f_X DNA-binding protein smu 86.1 0.52 1.8E-05 56.5 4.9 33 507-553 191-223 (646)
287 1w4r_A Thymidine kinase; type 86.1 0.93 3.2E-05 46.1 6.0 22 537-558 22-44 (195)
288 1zj6_A ADP-ribosylation factor 86.1 0.37 1.3E-05 47.3 3.1 23 535-557 16-38 (187)
289 1q3t_A Cytidylate kinase; nucl 86.0 0.35 1.2E-05 50.1 2.9 30 537-566 18-47 (236)
290 2a5j_A RAS-related protein RAB 86.0 0.4 1.4E-05 47.3 3.2 24 535-558 21-44 (191)
291 3cph_A RAS-related protein SEC 86.0 0.41 1.4E-05 47.8 3.3 25 533-557 18-42 (213)
292 3dz8_A RAS-related protein RAB 86.0 0.36 1.2E-05 47.6 2.9 26 534-559 22-47 (191)
293 1svi_A GTP-binding protein YSX 86.0 0.36 1.2E-05 47.5 2.9 24 534-557 22-45 (195)
294 1moz_A ARL1, ADP-ribosylation 85.9 0.27 9.3E-06 47.8 1.9 22 535-556 18-39 (183)
295 3t5g_A GTP-binding protein RHE 85.9 0.35 1.2E-05 46.9 2.7 22 536-557 7-28 (181)
296 1zbd_A Rabphilin-3A; G protein 85.8 0.38 1.3E-05 47.8 3.0 22 536-557 9-30 (203)
297 2p5s_A RAS and EF-hand domain 85.8 0.41 1.4E-05 47.6 3.2 26 533-558 26-51 (199)
298 2gza_A Type IV secretion syste 85.8 0.29 1E-05 54.5 2.4 24 537-560 177-200 (361)
299 2bcg_Y Protein YP2, GTP-bindin 85.6 0.38 1.3E-05 48.0 2.9 23 536-558 9-31 (206)
300 2qmh_A HPR kinase/phosphorylas 85.6 0.47 1.6E-05 48.5 3.5 24 537-560 36-59 (205)
301 3lnc_A Guanylate kinase, GMP k 85.5 0.31 1.1E-05 50.2 2.2 25 537-561 29-54 (231)
302 1g5t_A COB(I)alamin adenosyltr 85.5 1.3 4.3E-05 45.1 6.7 56 600-684 121-179 (196)
303 2b6h_A ADP-ribosylation factor 85.5 0.39 1.3E-05 47.7 2.9 23 534-556 28-50 (192)
304 3a8t_A Adenylate isopentenyltr 85.4 0.46 1.6E-05 52.4 3.6 29 537-565 42-70 (339)
305 3kta_A Chromosome segregation 85.4 0.44 1.5E-05 46.8 3.2 24 537-560 28-51 (182)
306 2i3b_A HCR-ntpase, human cance 85.4 0.45 1.5E-05 48.0 3.3 23 537-559 3-25 (189)
307 1fzq_A ADP-ribosylation factor 85.3 0.41 1.4E-05 47.0 2.9 23 535-557 16-38 (181)
308 2dr3_A UPF0273 protein PH0284; 85.3 0.39 1.3E-05 49.3 2.8 21 537-557 25-45 (247)
309 2fu5_C RAS-related protein RAB 85.2 0.28 9.6E-06 47.8 1.6 21 536-556 9-29 (183)
310 2il1_A RAB12; G-protein, GDP, 85.2 0.41 1.4E-05 47.4 2.9 22 535-556 26-47 (192)
311 1m2o_B GTP-binding protein SAR 85.0 0.43 1.5E-05 47.3 2.9 22 536-557 24-45 (190)
312 2fh5_B SR-beta, signal recogni 85.0 0.47 1.6E-05 47.6 3.2 24 535-558 7-30 (214)
313 2eyu_A Twitching motility prot 84.9 0.45 1.5E-05 50.5 3.2 23 537-559 27-49 (261)
314 2cjw_A GTP-binding protein GEM 84.9 0.48 1.6E-05 47.2 3.2 22 536-557 7-28 (192)
315 2q3h_A RAS homolog gene family 84.8 0.46 1.6E-05 47.1 3.0 25 533-557 18-42 (201)
316 2f7s_A C25KG, RAS-related prot 84.7 0.47 1.6E-05 47.8 3.1 23 535-557 25-47 (217)
317 1gwn_A RHO-related GTP-binding 84.6 0.45 1.5E-05 48.0 2.9 24 535-558 28-51 (205)
318 2ew1_A RAS-related protein RAB 84.5 0.46 1.6E-05 47.8 2.9 24 535-558 26-49 (201)
319 2o52_A RAS-related protein RAB 84.5 0.44 1.5E-05 47.6 2.7 22 535-556 25-46 (200)
320 3io5_A Recombination and repai 84.4 0.69 2.3E-05 50.7 4.3 36 532-569 27-68 (333)
321 3pqc_A Probable GTP-binding pr 84.4 0.47 1.6E-05 46.4 2.9 25 534-558 22-46 (195)
322 1gtv_A TMK, thymidylate kinase 84.3 0.28 9.7E-06 49.4 1.2 24 537-560 2-25 (214)
323 3llu_A RAS-related GTP-binding 84.3 0.48 1.6E-05 47.1 2.9 24 534-557 19-42 (196)
324 2h17_A ADP-ribosylation factor 84.3 0.4 1.4E-05 46.8 2.3 26 533-558 19-44 (181)
325 3cbq_A GTP-binding protein REM 84.3 0.4 1.4E-05 47.8 2.3 23 534-556 22-44 (195)
326 2atx_A Small GTP binding prote 84.2 0.5 1.7E-05 46.6 3.0 24 535-558 18-41 (194)
327 2oap_1 GSPE-2, type II secreti 84.1 0.65 2.2E-05 54.2 4.3 25 537-561 262-286 (511)
328 3q3j_B RHO-related GTP-binding 84.1 0.55 1.9E-05 47.6 3.3 25 533-557 25-49 (214)
329 2a5y_B CED-4; apoptosis; HET: 84.1 0.7 2.4E-05 54.2 4.6 44 505-557 131-174 (549)
330 2onk_A Molybdate/tungstate ABC 84.1 0.46 1.6E-05 49.8 2.7 24 537-560 26-49 (240)
331 1cr0_A DNA primase/helicase; R 84.0 0.47 1.6E-05 50.7 2.9 23 537-559 37-59 (296)
332 3lda_A DNA repair protein RAD5 84.0 0.83 2.8E-05 51.6 5.0 20 537-556 180-199 (400)
333 1rz3_A Hypothetical protein rb 83.9 0.51 1.8E-05 47.5 2.9 23 537-559 24-46 (201)
334 2hup_A RAS-related protein RAB 83.9 0.52 1.8E-05 47.1 3.0 24 535-558 29-52 (201)
335 2h57_A ADP-ribosylation factor 83.8 0.4 1.4E-05 47.1 2.1 24 533-556 19-42 (190)
336 2gco_A H9, RHO-related GTP-bin 83.8 0.52 1.8E-05 47.0 2.9 24 535-558 25-48 (201)
337 2pcj_A ABC transporter, lipopr 83.8 0.37 1.3E-05 49.8 1.9 23 537-559 32-54 (224)
338 2gk6_A Regulator of nonsense t 83.7 0.79 2.7E-05 54.8 5.0 22 537-558 197-218 (624)
339 3tif_A Uncharacterized ABC tra 83.7 0.41 1.4E-05 50.0 2.2 23 537-559 33-55 (235)
340 2j0v_A RAC-like GTP-binding pr 83.7 0.53 1.8E-05 47.2 2.9 23 535-557 9-31 (212)
341 2j1l_A RHO-related GTP-binding 83.6 0.51 1.7E-05 47.7 2.8 22 535-556 34-55 (214)
342 2fv8_A H6, RHO-related GTP-bin 83.5 0.54 1.9E-05 47.1 3.0 22 536-557 26-47 (207)
343 4gzl_A RAS-related C3 botulinu 83.5 0.56 1.9E-05 47.0 3.0 24 535-558 30-53 (204)
344 3d3q_A TRNA delta(2)-isopenten 83.4 0.65 2.2E-05 51.3 3.7 27 537-563 9-35 (340)
345 2x77_A ADP-ribosylation factor 83.4 0.41 1.4E-05 47.0 1.9 21 535-555 22-42 (189)
346 3cpj_B GTP-binding protein YPT 83.3 0.61 2.1E-05 47.4 3.3 23 536-558 14-36 (223)
347 1v5w_A DMC1, meiotic recombina 83.2 0.78 2.7E-05 50.5 4.3 22 537-558 124-145 (343)
348 3exa_A TRNA delta(2)-isopenten 83.0 0.71 2.4E-05 50.5 3.8 27 537-563 5-31 (322)
349 1nlf_A Regulatory protein REPA 82.9 0.51 1.8E-05 50.1 2.6 23 537-559 32-54 (279)
350 2vp4_A Deoxynucleoside kinase; 82.9 0.64 2.2E-05 47.9 3.3 22 537-558 22-43 (230)
351 3foz_A TRNA delta(2)-isopenten 82.9 0.87 3E-05 49.7 4.4 28 537-564 12-39 (316)
352 1lw7_A Transcriptional regulat 82.8 0.67 2.3E-05 51.4 3.5 25 537-561 172-196 (365)
353 2cbz_A Multidrug resistance-as 82.7 0.42 1.4E-05 50.0 1.7 24 537-560 33-56 (237)
354 1sgw_A Putative ABC transporte 82.7 0.48 1.7E-05 48.8 2.2 24 537-560 37-60 (214)
355 2f6r_A COA synthase, bifunctio 82.5 0.67 2.3E-05 49.6 3.3 23 536-558 76-98 (281)
356 2z43_A DNA repair and recombin 82.5 0.73 2.5E-05 50.3 3.7 23 537-559 109-131 (324)
357 4eaq_A DTMP kinase, thymidylat 82.5 0.6 2E-05 48.4 2.8 24 537-560 28-51 (229)
358 1b0u_A Histidine permease; ABC 82.4 0.49 1.7E-05 50.2 2.2 23 537-559 34-56 (262)
359 2qm8_A GTPase/ATPase; G protei 82.4 0.85 2.9E-05 50.2 4.2 23 537-559 57-79 (337)
360 2pt7_A CAG-ALFA; ATPase, prote 82.4 0.68 2.3E-05 50.9 3.4 24 537-560 173-196 (330)
361 4bas_A ADP-ribosylation factor 82.3 0.64 2.2E-05 45.7 2.9 22 535-556 17-38 (199)
362 1g6h_A High-affinity branched- 82.3 0.49 1.7E-05 50.0 2.2 24 537-560 35-58 (257)
363 2jeo_A Uridine-cytidine kinase 82.3 0.77 2.6E-05 47.7 3.6 23 537-559 27-49 (245)
364 3k53_A Ferrous iron transport 82.3 0.59 2E-05 49.4 2.8 23 536-558 4-26 (271)
365 1mv5_A LMRA, multidrug resista 82.2 0.52 1.8E-05 49.4 2.2 24 537-560 30-53 (243)
366 2ff7_A Alpha-hemolysin translo 82.1 0.51 1.7E-05 49.6 2.2 24 537-560 37-60 (247)
367 3aez_A Pantothenate kinase; tr 82.1 0.67 2.3E-05 50.5 3.2 24 537-560 92-115 (312)
368 1pui_A ENGB, probable GTP-bind 82.0 0.43 1.5E-05 47.7 1.5 23 535-557 26-48 (210)
369 2qnr_A Septin-2, protein NEDD5 81.9 0.55 1.9E-05 50.8 2.4 22 536-557 19-40 (301)
370 1f6b_A SAR1; gtpases, N-termin 81.9 0.55 1.9E-05 46.9 2.2 21 536-556 26-46 (198)
371 1z6t_A APAF-1, apoptotic prote 81.9 1.2 4E-05 52.4 5.4 45 502-556 124-168 (591)
372 2qi9_C Vitamin B12 import ATP- 81.8 0.54 1.9E-05 49.6 2.2 23 537-559 28-50 (249)
373 2yc2_C IFT27, small RAB-relate 81.8 0.36 1.2E-05 47.9 0.8 23 535-557 20-42 (208)
374 2pze_A Cystic fibrosis transme 81.7 0.55 1.9E-05 48.7 2.2 24 537-560 36-59 (229)
375 1ji0_A ABC transporter; ATP bi 81.6 0.55 1.9E-05 49.1 2.2 23 537-559 34-56 (240)
376 1vma_A Cell division protein F 81.6 2.1 7.3E-05 46.4 6.9 23 537-559 106-128 (306)
377 3gfo_A Cobalt import ATP-bindi 81.6 0.55 1.9E-05 50.3 2.2 24 537-560 36-59 (275)
378 3tqf_A HPR(Ser) kinase; transf 81.5 0.79 2.7E-05 45.9 3.1 23 536-558 17-39 (181)
379 2olj_A Amino acid ABC transpor 81.4 0.57 1.9E-05 49.9 2.2 23 537-559 52-74 (263)
380 3t5d_A Septin-7; GTP-binding p 81.4 0.63 2.1E-05 49.4 2.6 22 535-556 8-29 (274)
381 2g3y_A GTP-binding protein GEM 81.3 0.77 2.6E-05 46.9 3.1 22 535-556 37-58 (211)
382 2ixe_A Antigen peptide transpo 81.2 0.57 2E-05 50.0 2.2 24 537-560 47-70 (271)
383 2qu8_A Putative nucleolar GTP- 81.2 0.77 2.6E-05 46.8 3.1 23 535-557 29-51 (228)
384 2ewv_A Twitching motility prot 81.1 0.77 2.6E-05 51.3 3.3 24 537-560 138-161 (372)
385 3zvl_A Bifunctional polynucleo 81.1 0.57 1.9E-05 53.2 2.2 23 537-559 260-282 (416)
386 2ghi_A Transport protein; mult 81.0 0.67 2.3E-05 49.1 2.6 23 537-559 48-70 (260)
387 3a1s_A Iron(II) transport prot 81.0 0.77 2.6E-05 48.4 3.1 22 536-557 6-27 (258)
388 3hr8_A Protein RECA; alpha and 81.0 0.71 2.4E-05 51.4 2.9 33 537-569 63-99 (356)
389 1vpl_A ABC transporter, ATP-bi 81.0 0.6 2.1E-05 49.4 2.2 24 537-560 43-66 (256)
390 2wjy_A Regulator of nonsense t 80.9 1.1 3.9E-05 55.0 5.0 22 537-558 373-394 (800)
391 2ihy_A ABC transporter, ATP-bi 80.7 0.62 2.1E-05 50.0 2.2 24 537-560 49-72 (279)
392 2qag_B Septin-6, protein NEDD5 80.7 0.66 2.3E-05 52.8 2.6 22 537-558 44-65 (427)
393 2i1q_A DNA repair and recombin 80.6 0.8 2.7E-05 49.7 3.1 22 537-558 100-121 (322)
394 2nq2_C Hypothetical ABC transp 80.6 0.63 2.2E-05 49.1 2.2 24 537-560 33-56 (253)
395 2yz2_A Putative ABC transporte 80.5 0.62 2.1E-05 49.5 2.2 24 537-560 35-58 (266)
396 2d2e_A SUFC protein; ABC-ATPas 80.5 0.78 2.7E-05 48.2 2.9 22 537-558 31-52 (250)
397 4g1u_C Hemin import ATP-bindin 80.5 0.6 2E-05 49.7 2.0 23 537-559 39-61 (266)
398 1sq5_A Pantothenate kinase; P- 80.2 0.72 2.5E-05 50.0 2.6 24 537-560 82-105 (308)
399 1bif_A 6-phosphofructo-2-kinas 80.1 0.9 3.1E-05 52.2 3.5 25 535-559 39-63 (469)
400 2zu0_C Probable ATP-dependent 80.1 0.83 2.8E-05 48.6 2.9 22 537-558 48-69 (267)
401 3e70_C DPA, signal recognition 79.9 1.6 5.5E-05 47.9 5.2 23 537-559 131-153 (328)
402 3b1v_A Ferrous iron uptake tra 79.9 0.88 3E-05 48.5 3.1 22 536-557 4-25 (272)
403 2hf9_A Probable hydrogenase ni 79.7 0.97 3.3E-05 45.8 3.2 23 537-559 40-62 (226)
404 4dkx_A RAS-related protein RAB 79.6 1 3.4E-05 46.3 3.3 22 536-557 14-35 (216)
405 1nij_A Hypothetical protein YJ 79.6 2 6.8E-05 46.7 5.9 23 537-559 6-28 (318)
406 3cmu_A Protein RECA, recombina 79.6 0.91 3.1E-05 60.7 3.6 24 536-559 1428-1451(2050)
407 1z47_A CYSA, putative ABC-tran 79.5 0.8 2.7E-05 50.9 2.7 24 537-560 43-66 (355)
408 2f1r_A Molybdopterin-guanine d 79.5 0.73 2.5E-05 45.7 2.1 24 537-560 4-27 (171)
409 1p9r_A General secretion pathw 79.5 0.85 2.9E-05 51.8 3.0 24 537-560 169-192 (418)
410 3gmt_A Adenylate kinase; ssgci 79.5 0.76 2.6E-05 48.0 2.3 29 537-565 10-38 (230)
411 3r7w_A Gtpase1, GTP-binding pr 79.5 0.92 3.1E-05 49.1 3.1 22 536-557 4-25 (307)
412 2qag_C Septin-7; cell cycle, c 79.4 0.88 3E-05 51.7 3.0 24 536-559 32-55 (418)
413 1rj9_A FTSY, signal recognitio 79.4 0.94 3.2E-05 49.2 3.2 24 537-560 104-127 (304)
414 3d31_A Sulfate/molybdate ABC t 79.4 0.79 2.7E-05 50.8 2.6 24 537-560 28-51 (348)
415 2it1_A 362AA long hypothetical 79.0 0.85 2.9E-05 50.8 2.7 24 537-560 31-54 (362)
416 2yyz_A Sugar ABC transporter, 79.0 0.84 2.9E-05 50.8 2.7 24 537-560 31-54 (359)
417 3fvq_A Fe(3+) IONS import ATP- 79.0 0.78 2.7E-05 51.1 2.4 24 537-560 32-55 (359)
418 2yhs_A FTSY, cell division pro 79.0 2 6.7E-05 49.9 5.7 23 537-559 295-317 (503)
419 4dhe_A Probable GTP-binding pr 78.9 0.75 2.6E-05 46.3 2.1 23 535-557 29-51 (223)
420 1v43_A Sugar-binding transport 78.9 0.87 3E-05 51.0 2.7 24 537-560 39-62 (372)
421 1odf_A YGR205W, hypothetical 3 78.8 1 3.5E-05 48.5 3.2 24 537-560 33-56 (290)
422 3rlf_A Maltose/maltodextrin im 78.7 0.89 3E-05 51.0 2.7 24 537-560 31-54 (381)
423 3b9q_A Chloroplast SRP recepto 78.5 1.1 3.6E-05 48.7 3.2 23 537-559 102-124 (302)
424 1g29_1 MALK, maltose transport 78.5 0.89 3.1E-05 50.9 2.7 24 537-560 31-54 (372)
425 4ag6_A VIRB4 ATPase, type IV s 78.4 1.1 3.7E-05 50.1 3.4 25 534-558 34-58 (392)
426 2wsm_A Hydrogenase expression/ 78.4 1 3.5E-05 45.4 2.9 23 537-559 32-54 (221)
427 1xx6_A Thymidine kinase; NESG, 78.2 3.2 0.00011 41.8 6.5 22 537-558 10-31 (191)
428 3th5_A RAS-related C3 botulinu 79.6 0.43 1.5E-05 47.6 0.0 23 534-556 29-51 (204)
429 2va8_A SSO2462, SKI2-type heli 78.0 2.5 8.4E-05 51.1 6.6 17 537-553 48-64 (715)
430 3rc3_A ATP-dependent RNA helic 78.0 2.6 8.8E-05 50.9 6.7 29 537-565 157-185 (677)
431 2pjz_A Hypothetical protein ST 77.9 0.92 3.1E-05 48.2 2.4 23 537-559 32-54 (263)
432 2zr9_A Protein RECA, recombina 77.6 1 3.5E-05 49.9 2.8 22 537-558 63-84 (349)
433 1oxx_K GLCV, glucose, ABC tran 77.6 0.8 2.7E-05 50.9 1.9 24 537-560 33-56 (353)
434 3eph_A TRNA isopentenyltransfe 77.5 1.2 3.9E-05 50.5 3.2 28 537-564 4-31 (409)
435 1f2t_A RAD50 ABC-ATPase; DNA d 77.4 1.2 4.1E-05 42.9 2.9 23 537-559 25-47 (149)
436 3i8s_A Ferrous iron transport 77.3 1.1 3.6E-05 47.8 2.7 22 536-557 4-25 (274)
437 2xzl_A ATP-dependent helicase 77.2 1.7 5.7E-05 53.6 4.8 20 537-556 377-396 (802)
438 1h65_A Chloroplast outer envel 77.2 1.1 3.7E-05 47.3 2.8 23 535-557 39-61 (270)
439 2bbs_A Cystic fibrosis transme 77.1 0.95 3.3E-05 48.8 2.3 24 537-560 66-89 (290)
440 3fdi_A Uncharacterized protein 77.0 1.6 5.4E-05 44.3 3.8 29 537-565 8-36 (201)
441 3gj0_A GTP-binding nuclear pro 76.9 0.85 2.9E-05 46.1 1.8 23 535-557 15-38 (221)
442 4djt_A GTP-binding nuclear pro 76.8 1 3.5E-05 45.2 2.4 23 535-557 11-33 (218)
443 2axn_A 6-phosphofructo-2-kinas 76.5 1.2 4.1E-05 52.1 3.1 24 536-559 36-59 (520)
444 3iby_A Ferrous iron transport 76.5 1.2 3.9E-05 47.1 2.7 21 537-557 3-23 (256)
445 2ocp_A DGK, deoxyguanosine kin 76.4 1.7 5.8E-05 44.9 4.0 24 537-560 4-27 (241)
446 1np6_A Molybdopterin-guanine d 76.4 1.4 4.8E-05 43.8 3.2 23 537-559 8-30 (174)
447 2og2_A Putative signal recogni 76.1 3.4 0.00012 45.9 6.5 23 537-559 159-181 (359)
448 2qag_A Septin-2, protein NEDD5 75.7 1.1 3.8E-05 49.8 2.4 22 536-557 38-59 (361)
449 3gd7_A Fusion complex of cysti 75.7 0.97 3.3E-05 50.9 2.0 24 537-560 49-72 (390)
450 3nh6_A ATP-binding cassette SU 75.6 0.99 3.4E-05 49.1 2.0 24 537-560 82-105 (306)
451 2www_A Methylmalonic aciduria 75.6 1.6 5.3E-05 48.3 3.6 23 536-558 75-97 (349)
452 1tq4_A IIGP1, interferon-induc 75.6 1.8 6.3E-05 49.0 4.2 24 537-560 71-94 (413)
453 2kdx_A HYPA, hydrogenase/ureas 75.6 2.5 8.4E-05 39.3 4.4 30 342-378 70-100 (119)
454 2zj8_A DNA helicase, putative 75.4 2.8 9.5E-05 50.7 6.1 16 537-552 41-56 (720)
455 2npi_A Protein CLP1; CLP1-PCF1 75.4 1.3 4.3E-05 51.0 2.9 24 537-560 140-163 (460)
456 3cr8_A Sulfate adenylyltranfer 75.4 1.4 4.8E-05 51.9 3.3 24 537-560 371-394 (552)
457 1c9k_A COBU, adenosylcobinamid 75.3 1.3 4.6E-05 44.3 2.7 21 538-558 2-22 (180)
458 3bh0_A DNAB-like replicative h 75.2 1.4 4.7E-05 48.0 2.9 22 537-558 70-91 (315)
459 1tf7_A KAIC; homohexamer, hexa 75.2 1.3 4.3E-05 51.8 2.9 33 537-569 41-78 (525)
460 2qtf_A Protein HFLX, GTP-bindi 75.0 1.3 4.4E-05 49.3 2.8 28 531-558 174-202 (364)
461 1mky_A Probable GTP-binding pr 74.9 1.5 5.1E-05 49.9 3.3 25 534-558 179-203 (439)
462 1eto_A FIS, factor for inversi 74.8 1.7 5.9E-05 39.1 3.0 47 849-899 51-97 (98)
463 1zu4_A FTSY; GTPase, signal re 74.5 8.2 0.00028 42.0 9.0 23 537-559 107-129 (320)
464 2rcn_A Probable GTPase ENGC; Y 74.5 1.4 4.9E-05 48.9 2.9 23 537-559 217-239 (358)
465 2obl_A ESCN; ATPase, hydrolase 74.5 2 6.7E-05 47.6 4.0 25 537-561 73-97 (347)
466 2v6i_A RNA helicase; membrane, 74.4 2.8 9.5E-05 47.5 5.4 16 537-552 4-19 (431)
467 1xjc_A MOBB protein homolog; s 74.4 1.7 6E-05 43.0 3.2 23 537-559 6-28 (169)
468 1u0l_A Probable GTPase ENGC; p 74.3 1.2 4E-05 48.2 2.1 23 537-559 171-193 (301)
469 1ntc_A Protein (nitrogen regul 74.3 0.96 3.3E-05 40.0 1.2 46 850-899 45-90 (91)
470 1twf_L ABC10-alpha, DNA-direct 74.2 1.4 4.6E-05 37.4 2.0 31 342-378 25-55 (70)
471 1tf7_A KAIC; homohexamer, hexa 73.9 1.9 6.6E-05 50.2 4.0 24 537-560 283-306 (525)
472 1ega_A Protein (GTP-binding pr 73.9 1.6 5.4E-05 47.1 3.0 22 537-558 10-31 (301)
473 3def_A T7I23.11 protein; chlor 73.9 1.5 5.1E-05 46.1 2.7 23 535-557 36-58 (262)
474 3p32_A Probable GTPase RV1496/ 73.8 3.7 0.00013 45.2 6.1 23 537-559 81-103 (355)
475 2yv5_A YJEQ protein; hydrolase 73.8 1.6 5.4E-05 47.2 3.0 22 537-559 167-188 (302)
476 2dpy_A FLII, flagellum-specifi 73.7 1.6 5.6E-05 49.8 3.2 25 537-561 159-183 (438)
477 1ni3_A YCHF GTPase, YCHF GTP-b 73.7 1.8 6.1E-05 48.8 3.5 25 534-558 19-43 (392)
478 2fwr_A DNA repair protein RAD2 73.6 6.8 0.00023 44.4 8.4 22 537-558 110-131 (472)
479 3tui_C Methionine import ATP-b 73.6 1.5 5.1E-05 49.0 2.7 23 537-559 56-78 (366)
480 1u94_A RECA protein, recombina 73.5 1.6 5.6E-05 48.4 3.1 22 537-558 65-86 (356)
481 2hjg_A GTP-binding protein ENG 73.5 2.8 9.5E-05 47.6 5.1 24 535-558 175-198 (436)
482 3e2i_A Thymidine kinase; Zn-bi 73.4 4.7 0.00016 41.6 6.2 25 533-558 27-52 (219)
483 3a43_A HYPD, hydrogenase nicke 73.4 3.7 0.00013 39.4 5.1 47 343-390 68-128 (139)
484 1puj_A YLQF, conserved hypothe 72.9 1.8 6E-05 46.4 3.1 24 534-557 119-142 (282)
485 1p5z_B DCK, deoxycytidine kina 72.9 0.94 3.2E-05 47.6 0.9 25 536-560 25-49 (263)
486 2ohf_A Protein OLA1, GTP-bindi 72.8 1.9 6.7E-05 48.5 3.5 26 533-558 20-45 (396)
487 1lko_A Rubrerythrin all-iron(I 72.6 2.1 7.1E-05 43.3 3.3 33 343-382 153-186 (191)
488 2px0_A Flagellar biosynthesis 72.5 1.7 5.9E-05 46.9 2.9 23 537-559 107-129 (296)
489 3cnl_A YLQF, putative uncharac 72.1 1.7 6E-05 45.9 2.8 22 536-557 100-121 (262)
490 2wkq_A NPH1-1, RAS-related C3 72.1 2 6.7E-05 46.1 3.2 22 536-557 156-177 (332)
491 2aka_B Dynamin-1; fusion prote 71.9 1.6 5.6E-05 46.2 2.5 23 536-558 27-49 (299)
492 1x6v_B Bifunctional 3'-phospho 71.9 2.1 7.1E-05 51.1 3.6 23 537-559 54-76 (630)
493 3qks_A DNA double-strand break 71.9 1.8 6.2E-05 43.8 2.8 23 537-559 25-47 (203)
494 2p67_A LAO/AO transport system 71.9 2.4 8.2E-05 46.5 3.9 23 537-559 58-80 (341)
495 2e87_A Hypothetical protein PH 71.9 2 6.7E-05 47.4 3.2 24 534-557 166-189 (357)
496 1g8f_A Sulfate adenylyltransfe 71.6 3.3 0.00011 48.2 5.2 24 537-560 397-420 (511)
497 3l0i_B RAS-related protein RAB 71.5 0.52 1.8E-05 46.8 -1.4 21 535-555 33-53 (199)
498 1t9h_A YLOQ, probable GTPase E 71.5 1.4 4.8E-05 47.9 1.9 22 537-558 175-196 (307)
499 1umq_A Photosynthetic apparatu 71.4 0.97 3.3E-05 39.3 0.5 43 853-899 38-80 (81)
500 2j9r_A Thymidine kinase; TK1, 71.2 9 0.00031 39.4 7.8 60 600-682 102-161 (214)
No 1
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=100.00 E-value=7e-100 Score=910.34 Aligned_cols=585 Identities=40% Similarity=0.638 Sum_probs=541.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHcCCcEEEEehhhHhccCHHHHHHHHHCHHHHHHHHHHHHHHHHHhh
Q 002353 210 FIAKKFKEFLLTYVSPKSEQGDFEYVRLINEIVSANKCSLEIDYKQFIYIHPNIAIWLADAPQSVLEVMEDVARNVVFNL 289 (932)
Q Consensus 210 ~i~~~F~~FL~~f~~~~d~~g~~~Y~~~I~~m~~~~~~sl~Vd~~dL~~~~p~La~~L~~~P~~~L~if~~a~~evv~~~ 289 (932)
+++++|++||++|. +.+|.++|+++|++|+..++.+|.||+.||.+++|.|+.+|.++|.+++++|+.|+++++...
T Consensus 3 ~~~~~f~~Fl~~~~---~~~~~~~y~~~i~~~~~~~~~~l~v~~~~l~~~~~~l~~~l~~~p~~~~~~~~~a~~~~~~~~ 79 (595)
T 3f9v_A 3 DYRDVFIEFLTTFK---GNNNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQL 79 (595)
T ss_dssp CHHHHHHHHHHHCC---TTTTSCTTHHHHHHHHHHTCSSCCEEHHHHHTTCTTHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh---ccCCChhHHHHHHHHHHcCCcEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHHHHhh
Confidence 46889999999997 677889999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcccccceEEEEEccCCcccccccccccCCCcEEEEEEEEEEecccceeeeEEEEEcCC--CCCcccccc--ccCccc
Q 002353 290 HPNYKRIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRTGVFPQLQQVKYDCNK--CGAILGPFF--QNSYSE 365 (932)
Q Consensus 290 ~p~~~~i~~~I~Vri~nlp~~~~iR~Lrs~~igkLV~V~GiVtr~s~V~p~l~~~~f~C~~--C~~~~~~~~--q~~~~~ 365 (932)
+|.|.....+|+|||+|+|....+|+|++.++|+||+|+|+|||+|.|+|+++.++|.|.+ ||+.+.... +.....
T Consensus 80 ~~~~~~~~~~~~v~~~~~~~~~~~r~l~~~~i~~lv~v~G~V~r~s~v~~~~~~~~~~C~~~~C~~~~~~~~~~~~~~~~ 159 (595)
T 3f9v_A 80 DPTYQRDIEKVHVRIVGIPRVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVL 159 (595)
T ss_dssp CGGGTTTCCCCCCCEECCSCEECGGGCCGGGTTCCEEEEEEEEEECCCEEEEEECCCEEESSSCCCBCCSSCSSCCCSSC
T ss_pred chhhhhccceEEEEEeCCCCCCChhhcchhhCCcEEEEEEEEEEecCEEEEEEEEEEEecCCCCCCEEEEEeccccCCcc
Confidence 8988665668999999999999999999999999999999999999999999999999999 998765221 233345
Q ss_pred ccCCCCCCCCCCCceEEeecCceeeeeEEEEEeecCCCCCCCCCCeEEEEEEeccccccCCCCCeEEEEEEEeecccCcC
Q 002353 366 VKVGSCPECQSKGPFTINIEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSL 445 (932)
Q Consensus 366 ~~p~~C~~C~s~~~f~~~~~~s~~~d~Q~i~iQE~~~~v~~G~~Pr~i~V~L~~dLvd~~~pGd~V~ItGI~~~~~~~~~ 445 (932)
..|..||+|+++++|.++.+.|.|+|||+|+|||.|+.+|+|++||+++|+|.+||||+|+|||+|.|||||+..+..+.
T Consensus 160 ~~p~~C~~C~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~pr~~~v~l~~dlv~~~~pGd~v~v~Gi~~~~~~~~~ 239 (595)
T 3f9v_A 160 EMPTICPKCGKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPV 239 (595)
T ss_dssp CCCSSCTTTCCCSEEECCSTTCEEEEEEEEEEECCTTTSCTTSCCCEEEEEEEGGGTTCSCSSCEEEEEEECCCCCSSTT
T ss_pred cCCCcCCCCCCCCceEEeccCceeeeeEEEEEEeccccCCCCCCCceEEEEEecccccccccCCEEEEEEEEEecccccc
Confidence 67899999999889999999999999999999999999999999999999999999999999999999999999876532
Q ss_pred CcCCCcceEEEEEEEeccccccccccccccCHHHHHHHHHHhcChhhHHHHHHhhcccccChHHHHHHHhhhhhcCcccc
Q 002353 446 NTKNGFPVFATVVEANHITKKHDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTALALSMFGGQEKN 525 (932)
Q Consensus 446 ~~k~~~~vf~~~i~an~I~~~~~~~~~~~lt~~d~~~i~~l~~~~~i~~~l~~siap~I~G~~~vK~aillaL~gg~~k~ 525 (932)
. +...++|.+||+|++|...+.......+|+++++.|.++++++++++.|.++++|+|+|++.+|++++++|+||.++.
T Consensus 240 ~-~~~~~~~~~~i~a~~i~~~~~~~~~~~~t~~~~~~i~~~~~~~~~~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~ 318 (595)
T 3f9v_A 240 K-RGSRAVFDIYMKVSSIEVSQKVLDEVIISEEDEKKIKDLAKDPWIRDRIISSIAPSIYGHWELKEALALALFGGVPKV 318 (595)
T ss_dssp S-CTTCCCCCCCCEEEEEEECCCCCCCCCCTTSTHHHHHTTSSTTTGGGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEE
T ss_pred c-CCCcceEEEEEEEEeecccccccccCCCCHHHHHHHHHHhhCcHHHHHHHHhhcchhcChHHHHHHHHHHHhCCCccc
Confidence 2 233578999999999998877677778999999999999999999999999999999999999999999999998887
Q ss_pred ccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeee
Q 002353 526 VKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLI 605 (932)
Q Consensus 526 ~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~I 605 (932)
..+ .++|+++||||+||||||||+||+++++.+++.+++.+.+.+..+++++..++..+|.|..++|++.+|++|||||
T Consensus 319 ~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~I 397 (595)
T 3f9v_A 319 LED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVI 397 (595)
T ss_dssp TTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECC
T ss_pred ccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEe
Confidence 777 8899999999999999999999999999999999998888899999999998888999999999999999999999
Q ss_pred ccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCC
Q 002353 606 DEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDV 685 (932)
Q Consensus 606 DE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~ 685 (932)
|||++|++..+..|+++||++.+++.++|....++++++|||||||..|+|+...++.+|+.|+++|++|||+++++.|.
T Consensus 398 DEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~ 477 (595)
T 3f9v_A 398 DEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQ 477 (595)
T ss_dssp TTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCT
T ss_pred ehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHH
Q 002353 686 VDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLT 765 (932)
Q Consensus 686 ~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~ 765 (932)
++.+ +..|++|++..|.... ....++.+.|++|+.||+..++|.|++++.+.|.
T Consensus 478 ~~~e-~~~i~~~il~~~~~~~-------------------------~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~ 531 (595)
T 3f9v_A 478 PGEQ-DRELANYILDVHSGKS-------------------------TKNIIDIDTLRKYIAYARKYVTPKITSEAKNLIT 531 (595)
T ss_dssp THHH-HHHHHHHHHTTTCCCS-------------------------SSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHH
T ss_pred CCHH-HHHHHHHHHHHhhccc-------------------------cccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 9999 9999999999875421 1234778899999999999899999999999999
Q ss_pred HHHHHHHhcccCCC--CcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhhhh
Q 002353 766 HVYAELRRESSHGQ--GVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSFIS 825 (932)
Q Consensus 766 ~~Y~~lR~~~~~~~--~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~~~ 825 (932)
++|..||+.....+ .+++|+|+|++++|+|+|+|+|++++.|+.+||.+|++++..|+.+
T Consensus 532 ~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~sl~~ 593 (595)
T 3f9v_A 532 DFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLFLES 593 (595)
T ss_dssp HHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHHHHh
Confidence 99999998876543 7999999999999999999999999999999999999999999754
No 2
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=100.00 E-value=5.7e-72 Score=635.73 Aligned_cols=387 Identities=28% Similarity=0.407 Sum_probs=340.0
Q ss_pred cCCCCCCCCCCCceEE--eecCceeeeeEEEEEeecCCCCCCCCCCeEEEEEEeccccc------cCCCCCeEEEEEEEe
Q 002353 367 KVGSCPECQSKGPFTI--NIEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLID------CARPGEEIEVTGIYT 438 (932)
Q Consensus 367 ~p~~C~~C~s~~~f~~--~~~~s~~~d~Q~i~iQE~~~~v~~G~~Pr~i~V~L~~dLvd------~~~pGd~V~ItGI~~ 438 (932)
+|..||.-+++|.... -.+++.|.|||.|+|||.|+.+|.|++||+++|+|.+|||| +|+|||+|+|||||+
T Consensus 89 ~~~~~~~~~~~g~~~~~~r~~k~~~~d~Q~IkiQE~pe~~~~G~~Prsi~v~l~~dLvd~~~~~~~~~pGd~V~v~GI~~ 168 (506)
T 3f8t_A 89 APDVEPRVRFRGLPHRFRRVERIRPMDGALISIEGVVREVRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILGIVR 168 (506)
T ss_dssp CTTSCCCEEEECCCGGGSSCSCCGGGTTCEEEEEEEEEEEEESSSEEEEEEECSSSEEEEECTTCCCCTTCEEEEEEEEE
T ss_pred CCCCCcccccCCcccccchHhhccccccEEEEEecCcccCCCCCCCceEEEEecccccCcccccccccCCCEEEEEEEEE
Confidence 4666776555553322 23466789999999999999999999999999999999999 999999999999998
Q ss_pred ecccCcCCcCCCcceEEEEEEEeccccccccccccccCHHHHHHHHHHhcChhhHHHHHHhhcccccChHHHHHHHhhhh
Q 002353 439 NNFDLSLNTKNGFPVFATVVEANHITKKHDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTALALSM 518 (932)
Q Consensus 439 ~~~~~~~~~k~~~~vf~~~i~an~I~~~~~~~~~~~lt~~d~~~i~~l~~~~~i~~~l~~siap~I~G~~~vK~aillaL 518 (932)
.. ||+||||++ ++.+....+|+++++.|++++++ ++|+.|.+||+| |+||+.+|+||+++|
T Consensus 169 ~~----------------~l~a~~i~~-~~~~~~~~~t~ed~~~i~~l~~~-~~~~~l~~sIap-I~G~e~vK~aLll~L 229 (506)
T 3f8t_A 169 SA----------------TLDALEVHK-KDPIPEVHPDPAELEEFRELADK-DPLTTFARAIAP-LPGAEEVGKMLALQL 229 (506)
T ss_dssp TT----------------EEEEEEEEE-ECSSCCCCCCHHHHHHHHHHHHS-CHHHHHHHHHCC-STTCHHHHHHHHHHH
T ss_pred Ee----------------EEEEEEEEE-cCccccCCCCHHHHHHHHHHHHH-HHHHHHHHHhcc-cCCCHHHHHHHHHHH
Confidence 53 899999988 44466678999999999999999 999999999999 999999999999999
Q ss_pred hcCccccccCcccccCCceEEEeCCCCchHHHHHHHH-HHhCCCcEEecCCCcccccccceeecCcccchhhhccCceec
Q 002353 519 FGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYV-EKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVL 597 (932)
Q Consensus 519 ~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~v-a~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~l 597 (932)
+||..+ +||++||||+|+||| ||+||+++ ++++||.+|++|.+++..+|+++ .+++ +| |.+++|++++
T Consensus 230 ~GG~~k-------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s-~r~~-tG-~~~~~G~l~L 298 (506)
T 3f8t_A 230 FSCVGK-------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAV-LKED-RG-WALRAGAAVL 298 (506)
T ss_dssp TTCCSS-------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEE-EEES-SS-EEEEECHHHH
T ss_pred cCCccc-------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEE-EEcC-CC-cccCCCeeEE
Confidence 999644 799999999999999 99999999 99999999999998888999998 6777 88 9999999999
Q ss_pred cCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhcccc
Q 002353 598 ADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFD 677 (932)
Q Consensus 598 Ad~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFD 677 (932)
|++||||||||++|++..|.+||++||+|+|++. |. +++++|+||||+||+. +|++.+++ +|+.|++++|||||
T Consensus 299 AdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~--G~--~lparf~VIAA~NP~~-~yd~~~s~-~~~~Lp~alLDRFD 372 (506)
T 3f8t_A 299 ADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD--GI--ALNARCAVLAAINPGE-QWPSDPPI-ARIDLDQDFLSHFD 372 (506)
T ss_dssp TTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET--TE--EEECCCEEEEEECCCC---CCSCGG-GGCCSCHHHHTTCS
T ss_pred cCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC--CE--EcCCCeEEEEEeCccc-ccCCCCCc-cccCCChHHhhhee
Confidence 9999999999999999999999999999999996 76 9999999999999998 99998998 99999999999999
Q ss_pred EEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHh-hcCCCcC
Q 002353 678 VLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAK-LNVFPRL 756 (932)
Q Consensus 678 li~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar-~~~~P~L 756 (932)
|++++.|.++++.|..- ....++.+.|++|+.||| .+++|.+
T Consensus 373 Li~i~~d~pd~e~d~e~-------------------------------------~~~~ls~e~L~~yi~~ar~~~~~p~l 415 (506)
T 3f8t_A 373 LIAFLGVDPRPGEPEEQ-------------------------------------DTEVPSYTLLRRYLLYAIREHPAPEL 415 (506)
T ss_dssp EEEETTC---------------------------------------------------CCHHHHHHHHHHHHHHCSCCEE
T ss_pred eEEEecCCCChhHhhcc-------------------------------------cCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 99999999998877320 013578999999999999 7889999
Q ss_pred ChhHHHHHHHHHHHHHhccc-----CCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhhhhh
Q 002353 757 HDPDMEKLTHVYAELRRESS-----HGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSFIST 826 (932)
Q Consensus 757 s~ea~~~L~~~Y~~lR~~~~-----~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~~~~ 826 (932)
++++.++|.++|..+|+... ....+++|+|++++|+|+|+|+|+|++|++|+.+||.+|++|++.|+.+.
T Consensus 416 s~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~~~ 490 (506)
T 3f8t_A 416 TEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLETA 490 (506)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998421 12478999999999999999999999999999999999999999997764
No 3
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=100.00 E-value=1.6e-52 Score=456.56 Aligned_cols=267 Identities=24% Similarity=0.441 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHH--HcCCcEEEEehhhHhccCHHHHHHHHHCHHHHHHHHHHHHHHH
Q 002353 208 RRFIAKKFKEFLLTYVSPKSEQGDFEYVRLINEIV--SANKCSLEIDYKQFIYIHPNIAIWLADAPQSVLEVMEDVARNV 285 (932)
Q Consensus 208 ~~~i~~~F~~FL~~f~~~~d~~g~~~Y~~~I~~m~--~~~~~sl~Vd~~dL~~~~p~La~~L~~~P~~~L~if~~a~~ev 285 (932)
+.+++++|++||++| +|+++|++|+ ..+..+|.|||.||.+++|.||.+|.++|.+++++|+.|++++
T Consensus 11 ~~~~~~~f~~Fl~~~----------~Y~~~i~~~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~ 80 (279)
T 1ltl_A 11 KSKTLTKFEEFFSLQ----------DYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNI 80 (279)
T ss_dssp HHHHHHHHHHHTTSH----------HHHHHHHHHHHHTTSCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhccc----------hHHHHHHHHHhhCCCCeEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence 467889999999887 5999999999 7789999999999999999999999999999999999998876
Q ss_pred HHhhCCCcccccceEEEEEccCCcccccccccccCCCcEEEEEEEEEEecccceeeeEEEEEcCCCCCccccccccCccc
Q 002353 286 VFNLHPNYKRIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRTGVFPQLQQVKYDCNKCGAILGPFFQNSYSE 365 (932)
Q Consensus 286 v~~~~p~~~~i~~~I~Vri~nlp~~~~iR~Lrs~~igkLV~V~GiVtr~s~V~p~l~~~~f~C~~C~~~~~~~~q~~~~~ 365 (932)
. | |.... .++|||.|+|....+|+|++.|+|+||+|+|+|||+|.|+|+++.++|.|.+||++. .+.+.....
T Consensus 81 ~----~-~~~~~-~~~vr~~~~~~~~~iR~L~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~C~~~~-~v~~~~~~~ 153 (279)
T 1ltl_A 81 D----R-LRKNV-DLNIRFSGISNVIPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHH-AVTQSTNMI 153 (279)
T ss_dssp C----T-TCCCC-CCEEEEECCSCBCCGGGCCGGGTTSEEEEEEEEEEECCCEEEEEEEEEEETTTCCEE-EEECSSSSC
T ss_pred c----c-ccCCe-eEEEEEECCCCCCCcccCChhhCCCEEEEEEEEEEecceEEEEEEEEEEcCCCCCEE-EEEecCCcc
Confidence 2 3 33333 799999999999999999999999999999999999999999999999999999874 344444445
Q ss_pred ccCCCCCCCCCCCceEEeecCceeeeeEEEEEeecCCCCCCCCCCeEEEEEEeccccccCCCCCeEEEEEEEeecccCcC
Q 002353 366 VKVGSCPECQSKGPFTINIEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSL 445 (932)
Q Consensus 366 ~~p~~C~~C~s~~~f~~~~~~s~~~d~Q~i~iQE~~~~v~~G~~Pr~i~V~L~~dLvd~~~pGd~V~ItGI~~~~~~~~~ 445 (932)
..|..||+|++++ |.++.+.|.|+|||+|+|||.|+.+|+|++||+++|+|.+||||+|+|||+|+|||||+..+
T Consensus 154 ~~P~~Cp~C~~~~-f~l~~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~V~l~~dLvd~~~PGDrV~vtGI~~~~~---- 228 (279)
T 1ltl_A 154 TEPSLCSECGGRS-FRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTVR---- 228 (279)
T ss_dssp CCCSCCTTTCCCC-EEECGGGCEEEEEEEEEEECCSTTCCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEEEEEEEE----
T ss_pred cCCCcCCCCCCCC-cEEeccccEEEeeEEEEEecCcccCCCCCCCeEEEEEEcccccCccCCCCEEEEEEEEEEee----
Confidence 6789999999998 99999999999999999999999999999999999999999999999999999999999875
Q ss_pred CcCCCcceEEEEEEEeccccccccccccccCHHHHHHHHHHhcChhhHHHHHH
Q 002353 446 NTKNGFPVFATVVEANHITKKHDLFSAYKLTQEDKEEIEKLAKDPRIGERIIK 498 (932)
Q Consensus 446 ~~k~~~~vf~~~i~an~I~~~~~~~~~~~lt~~d~~~i~~l~~~~~i~~~l~~ 498 (932)
+.+.++|.+||+||||.+.++.+....+|++|++.|++|+++|++|++|++
T Consensus 229 --~~~~~~~~~~l~a~~I~~~~~~~~~~~~t~ed~~~i~~ls~~~~iy~~L~~ 279 (279)
T 1ltl_A 229 --DERTKRFKNFIYGNYTEFLEQEFEELQISEEDEEKIKELAGDPNIYEKIIR 279 (279)
T ss_dssp --ETTTTEEEEEEEEEECCBC--------------------------------
T ss_pred --CCCCceEEEEEEEEEEEEecCccccCCCCHHHHHHHHHHhcCCCHHHHhhC
Confidence 234689999999999999887777778999999999999999999998864
No 4
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.8e-51 Score=442.13 Aligned_cols=254 Identities=29% Similarity=0.475 Sum_probs=233.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHcCCcEEEEehhhHhccCHHHHHHHHHCHHHHHHHHHHHHHHHHHhh
Q 002353 210 FIAKKFKEFLLTYVSPKSEQGDFEYVRLINEIVSANKCSLEIDYKQFIYIHPNIAIWLADAPQSVLEVMEDVARNVVFNL 289 (932)
Q Consensus 210 ~i~~~F~~FL~~f~~~~d~~g~~~Y~~~I~~m~~~~~~sl~Vd~~dL~~~~p~La~~L~~~P~~~L~if~~a~~evv~~~ 289 (932)
++.++|++||.+|. +..+..+|+++|++|+..+..+|.|||.||.++++.||.+|.++|.++|++|++|+++++...
T Consensus 9 ~~~~~f~~Fl~~f~---~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~~~~~ 85 (268)
T 2vl6_A 9 DYRDVFIEFLTTFK---GNNNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQL 85 (268)
T ss_dssp CHHHHHHHHHHHCC---CSSSSCTTHHHHHHHHHTTCCCEEEEHHHHHHHCHHHHHHHHHHTTTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhh---cccCchHHHHHHHHHHHcCCcEEEEEHHHHHhhhHHHHHHHHHCHHHHHHHHHHHHHHHHHHh
Confidence 45788999999997 567889999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcccccceEEEEEccCCcccccccccccCCCcEEEEEEEEEEecccceeeeEEEEEc--CCCCCcccccc--ccCccc
Q 002353 290 HPNYKRIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRTGVFPQLQQVKYDC--NKCGAILGPFF--QNSYSE 365 (932)
Q Consensus 290 ~p~~~~i~~~I~Vri~nlp~~~~iR~Lrs~~igkLV~V~GiVtr~s~V~p~l~~~~f~C--~~C~~~~~~~~--q~~~~~ 365 (932)
.|.+......++|||.|+|....+|+|++.|+|+||+|+|+|||+|.|+|+++.++|.| .+||+++...+ +.....
T Consensus 86 ~~~~~~~~~~~~vr~~~~~~~~~iR~l~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~~~C~~~~~~~~~~~~~~~~ 165 (268)
T 2vl6_A 86 DPTYQRDIEKVHVRIVGIPRVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVL 165 (268)
T ss_dssp CGGGTTTCSCCCEEEECCSCEECGGGCCGGGTTSEEEEEEEEEEECCCEEEEEECEEEEECTTCCCEEESSTTSCCCTTC
T ss_pred CchhhccCccEEEEEECCCCCCccccCChhHCCCeEEEEEEEEEcCCcceEeEEEEEECCCCCCCCEEeeeecccCCCcc
Confidence 88887666789999999999999999999999999999999999999999999999999 99998865442 444455
Q ss_pred ccCCCCCCCCCCCceEEeecCceeeeeEEEEEeecCCCCCCCCCCeEEEEEEeccccccCCCCCeEEEEEEEeecccCcC
Q 002353 366 VKVGSCPECQSKGPFTINIEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSL 445 (932)
Q Consensus 366 ~~p~~C~~C~s~~~f~~~~~~s~~~d~Q~i~iQE~~~~v~~G~~Pr~i~V~L~~dLvd~~~pGd~V~ItGI~~~~~~~~~ 445 (932)
..|..||.|+++|+|.++.+.|.|+|||+|+|||.|+.+|+|++||+++|+|.+||||+|+|||+|+|||||+..+....
T Consensus 166 ~~P~~Cp~C~~~~~~~l~~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~v~l~~dLvd~~~PGDrV~vtGI~~~~~~~~~ 245 (268)
T 2vl6_A 166 EMPTICPKCGKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPV 245 (268)
T ss_dssp CCCSBCTTTCCBCEEEECGGGCEEEEEEEEEEECCGGGSCTTSCCCEEEEEEEGGGTTSSCTTCEEEEEEEEEEECSSTT
T ss_pred cCCccCCCCCCCCCEEEecCccEEEeeEEEEEEeCCCCCCCCCCCcEEEEEEccCccCcccCCCEEEEEEEEEEeecccc
Confidence 68899999999989999999999999999999999999999999999999999999999999999999999999886533
Q ss_pred CcCCCcceEEEEEEEecccccc
Q 002353 446 NTKNGFPVFATVVEANHITKKH 467 (932)
Q Consensus 446 ~~k~~~~vf~~~i~an~I~~~~ 467 (932)
.+.++++|.+||+||||.+.+
T Consensus 246 -~~~~~~~~~~yl~an~I~~~~ 266 (268)
T 2vl6_A 246 -KRGSRAVFDIYMKVSSIEVSQ 266 (268)
T ss_dssp -CCSSCCEEEEEEEEEEEEEC-
T ss_pred -cCCCceEEEEEEEEEEEEEec
Confidence 335678999999999998754
No 5
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.92 E-value=3.2e-23 Score=230.12 Aligned_cols=277 Identities=16% Similarity=0.178 Sum_probs=205.5
Q ss_pred hhhHHHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEec--C
Q 002353 490 PRIGERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTT--G 567 (932)
Q Consensus 490 ~~i~~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~--g 567 (932)
.++++++..++.+.|+|++.++++++.++.++. |+||+||||||||++++++++.++..++.. .
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~--------------~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~ 80 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICTGG--------------HILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFT 80 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHTC--------------CEEEESCCCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHhccceeCcHHHHHHHHHHHHcCC--------------eEEEECCCCCcHHHHHHHHHHHhCCCeEEEecC
Confidence 357788999999999999999999999988752 999999999999999999999987765532 1
Q ss_pred CCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEe
Q 002353 568 KGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIA 647 (932)
Q Consensus 568 ~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIA 647 (932)
.......+++........+.|...+|.+ .+||+||||++.+++..+..|+++|+++.+++ .|.....+.++.|||
T Consensus 81 ~~~~~~~l~g~~~~~~~~~~~~~~~g~l---~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~--~g~~~~~~~~~~via 155 (331)
T 2r44_A 81 PDLLPSDLIGTMIYNQHKGNFEVKKGPV---FSNFILADEVNRSPAKVQSALLECMQEKQVTI--GDTTYPLDNPFLVLA 155 (331)
T ss_dssp TTCCHHHHHEEEEEETTTTEEEEEECTT---CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEE--TTEEEECCSSCEEEE
T ss_pred CCCChhhcCCceeecCCCCceEeccCcc---cccEEEEEccccCCHHHHHHHHHHHhcCceee--CCEEEECCCCEEEEE
Confidence 1222233444333233345555556655 35899999999999999999999999999877 677788899999999
Q ss_pred eeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhh
Q 002353 648 AANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVA 727 (932)
Q Consensus 648 AaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (932)
|+||.... ....++++|++||++.+.+ +.++.+....+.++.+.. .+..
T Consensus 156 t~np~~~~--------~~~~l~~~l~~Rf~~~i~i-~~p~~~~~~~il~~~~~~----~~~~------------------ 204 (331)
T 2r44_A 156 TQNPVEQE--------GTYPLPEAQVDRFMMKIHL-TYLDKESELEVMRRVSNM----NFNY------------------ 204 (331)
T ss_dssp EECTTCCS--------CCCCCCHHHHTTSSEEEEC-CCCCHHHHHHHHHHHHCT----TCCC------------------
T ss_pred ecCCCccc--------CcccCCHHHHhheeEEEEc-CCCCHHHHHHHHHhcccc----Ccch------------------
Confidence 99986510 1126899999999987776 556665555554443322 1110
Q ss_pred cccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCC-------CCcccCHHHHHHHHHHHHHHHH
Q 002353 728 DREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHG-------QGVPIAVRHIESMIRMSEAHAR 800 (932)
Q Consensus 728 ~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~-------~~~pitvR~LEslIRlAeA~Ak 800 (932)
.....++...+......++ ...+++++.+.|.+++..+|...... ..+++++|.+.+++++|.++|.
T Consensus 205 ---~~~~~~~~~~i~~~~~~~~---~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~ 278 (331)
T 2r44_A 205 ---QVQKIVSKNDVLEIRNEIN---KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAF 278 (331)
T ss_dssp ---CCCCCSCHHHHHHHHHHHH---TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHH
T ss_pred ---hccccCCHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHH
Confidence 0112355555655555443 34789999999999988888653210 1356799999999999999999
Q ss_pred hhCCCCcCHHHHHHHHHHHHhh
Q 002353 801 MRLRQHVTQEDVNMAIRVLLDS 822 (932)
Q Consensus 801 l~lr~~Vt~~Dv~~AI~l~~~S 822 (932)
++.++.|+.+||.+|+..+...
T Consensus 279 l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 279 FNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp HTTCSBCCHHHHHHHHHHHHTT
T ss_pred HcCCCCCCHHHHHHHHHHHhHh
Confidence 9999999999999999877654
No 6
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.89 E-value=1.5e-22 Score=225.26 Aligned_cols=265 Identities=19% Similarity=0.194 Sum_probs=193.3
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCC-------------
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKG------------- 569 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~------------- 569 (932)
.|+|++.++.++..+++.+.. -|+||+|+||||||++|+++++.+++..+..+..
T Consensus 25 ~i~G~~~~~~~l~~~~~~~~~------------~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAVDPGI------------GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWA 92 (350)
T ss_dssp GSCSCHHHHHHHHHHHHCGGG------------CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTC
T ss_pred hccChHHHHHHHHHHhhCCCC------------ceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchh
Confidence 588999999988777765311 1899999999999999999999987643322210
Q ss_pred --------------------cccccccceeecC--cccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhce
Q 002353 570 --------------------ASAVGLTAAVHKD--PVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQS 627 (932)
Q Consensus 570 --------------------ss~~gLta~v~kd--~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~ 627 (932)
.+...+.+..... ...+.+...+|.+..+++||+||||++.++...+..|+.+|+.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~ 172 (350)
T 1g8p_A 93 TVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGE 172 (350)
T ss_dssp CCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSE
T ss_pred hhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCc
Confidence 0011111110000 011234556788888899999999999999999999999999999
Q ss_pred eeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCC
Q 002353 628 ISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQP 707 (932)
Q Consensus 628 isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~ 707 (932)
+.+.+.|.....+.++.+|+|+||..+ .++++|++||++.+.+...++.+....+..+.+..... +
T Consensus 173 ~~~~~~g~~~~~~~~~~li~~~n~~~~------------~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~--~ 238 (350)
T 1g8p_A 173 NVVERDGLSIRHPARFVLVGSGNPEEG------------DLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDAD--P 238 (350)
T ss_dssp EEECCTTCCEEEECCEEEEEEECSCSC------------CCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHC--H
T ss_pred eEEEecceEEeeCCceEEEEEeCCCCC------------CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccC--c
Confidence 888899999899999999999998432 58899999999988886555666665676665442110 0
Q ss_pred CCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCC-CcCChhHHHHHHHHHHHHHhcccCCCCccc-CH
Q 002353 708 KGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVF-PRLHDPDMEKLTHVYAELRRESSHGQGVPI-AV 785 (932)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~-P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pi-tv 785 (932)
... . .. .......++++|.+++.... ..+++++.+.|.+++... .+ ++
T Consensus 239 -------------~~~-~-~~-----~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~----------~~~~~ 288 (350)
T 1g8p_A 239 -------------KAF-L-EE-----WRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIAL----------GSDGL 288 (350)
T ss_dssp -------------HHH-H-HH-----HHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHS----------SSCSH
T ss_pred -------------hhh-c-cc-----cccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHh----------CCCCc
Confidence 000 0 00 00134567888887765433 379999999999986522 23 68
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhh
Q 002353 786 RHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSF 823 (932)
Q Consensus 786 R~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~ 823 (932)
|.+.++++.|.++|.++.++.|+.+|+..|+.++..+-
T Consensus 289 R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r 326 (350)
T 1g8p_A 289 RGELTLLRSARALAALEGATAVGRDHLKRVATMALSHR 326 (350)
T ss_dssp HHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGG
T ss_pred cHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999887663
No 7
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.89 E-value=8e-22 Score=230.57 Aligned_cols=270 Identities=18% Similarity=0.190 Sum_probs=187.8
Q ss_pred hhHHHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCc---EEecC
Q 002353 491 RIGERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRA---VYTTG 567 (932)
Q Consensus 491 ~i~~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~---v~~~g 567 (932)
..+..+..++.+.|+|++.+++++++++.++. ||||+||||||||++|+++++.+.+. .+...
T Consensus 11 ~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~~--------------~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~ 76 (500)
T 3nbx_X 11 ERISRLSSSLEKGLYERSHAIRLCLLAALSGE--------------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMT 76 (500)
T ss_dssp HHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTC--------------EEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCC--------------eeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 45778999999999999999999999988763 99999999999999999999988542 12222
Q ss_pred CCcccccccceeecCc--ccchhh-hccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceE
Q 002353 568 KGASAVGLTAAVHKDP--VTREWT-LEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCS 644 (932)
Q Consensus 568 ~~ss~~gLta~v~kd~--~~g~~~-le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~s 644 (932)
...+...+++...... ..|.+. ...|. ++..+|||||||+++++..+..|+++|+++.+++ .|....++.++
T Consensus 77 ~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~--l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i--~G~~~~~~~~~- 151 (500)
T 3nbx_X 77 RFSTPEEVFGPLSIQALKDEGRYERLTSGY--LPEAEIVFLDEIWKAGPAILNTLLTAINERQFRN--GAHVEKIPMRL- 151 (500)
T ss_dssp TTCCHHHHHCCBC----------CBCCTTS--GGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC--SSSEEECCCCE-
T ss_pred hcCCHHHhcCcccHHHHhhchhHHhhhccC--CCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccC--CCCcCCcchhh-
Confidence 2223333333221110 112111 12222 2235689999999999999999999999999877 77778888886
Q ss_pred EEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhh
Q 002353 645 VIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDI 724 (932)
Q Consensus 645 IIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~ 724 (932)
+|+|||+... ...+.+++++||.+.+.+ +.|+...+.. .|+..+......
T Consensus 152 iI~ATN~lpe----------~~~~~~aLldRF~~~i~v-~~p~~~ee~~---~IL~~~~~~~~~---------------- 201 (500)
T 3nbx_X 152 LVAASNELPE----------ADSSLEALYDRMLIRLWL-DKVQDKANFR---SMLTSQQDENDN---------------- 201 (500)
T ss_dssp EEEEESSCCC----------TTCTTHHHHTTCCEEEEC-CSCCCHHHHH---HHHTCCCCTTSC----------------
T ss_pred hhhccccCCC----------ccccHHHHHHHHHHHHHH-HHhhhhhhHH---HHHhcccccCCC----------------
Confidence 6788886432 123568999999776666 5665533321 234433221110
Q ss_pred hhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCC
Q 002353 725 QVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLR 804 (932)
Q Consensus 725 ~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr 804 (932)
.......++.+.+..+..+++. ..+++++.+.|.+.+..+|.... ...++.|.+++++++|+|+|.+++|
T Consensus 202 ----~~~~~~~~~~e~l~~~~~~~~~---v~v~d~v~e~i~~l~~~lr~~r~---~~~iS~R~~~~llr~A~A~A~l~gr 271 (500)
T 3nbx_X 202 ----PVPDALQVTDEEYERWQKEIGE---ITLPDHVFELIFMLRQQLDKLPD---APYVSDRRWKKAIRLLQASAFFSGR 271 (500)
T ss_dssp ----CSCTTTSBCHHHHHHHHHHHTT---CBCCHHHHHHHHHHHHHHHHCSS---SCCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ----CCCccceecHHHHHHHHhcCCc---ccCchHHHHHHHHHHHHhhcCCC---CCccchhHHHHHHHHHHHHHhhcCC
Confidence 0011245788888888887763 46888888888888776665432 3347899999999999999999999
Q ss_pred CCcCHHHHHHHHHHH
Q 002353 805 QHVTQEDVNMAIRVL 819 (932)
Q Consensus 805 ~~Vt~~Dv~~AI~l~ 819 (932)
++|+.+||..|..++
T Consensus 272 ~~Vt~eDv~~a~~vL 286 (500)
T 3nbx_X 272 SAVAPVDLILLKDCL 286 (500)
T ss_dssp SBCCGGGGGGGGGTS
T ss_pred ccccchHHHHHHhhh
Confidence 999999998444433
No 8
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.81 E-value=1.8e-19 Score=216.35 Aligned_cols=239 Identities=20% Similarity=0.278 Sum_probs=171.2
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcE----EecCC---------
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAV----YTTGK--------- 568 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v----~~~g~--------- 568 (932)
..++|+..++..+.+++..|. ++||+||||||||++|++++..+++.. ...+.
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g~--------------~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i 106 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQKR--------------HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRI 106 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTTC--------------CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEE
T ss_pred ceEECchhhHhhccccccCCC--------------EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcE
Confidence 357899999999999888762 899999999999999999999986542 11000
Q ss_pred ---------------------------------------------------------CcccccccceeecCc------cc
Q 002353 569 ---------------------------------------------------------GASAVGLTAAVHKDP------VT 585 (932)
Q Consensus 569 ---------------------------------------------------------~ss~~gLta~v~kd~------~~ 585 (932)
..+...|++.+..++ .+
T Consensus 107 ~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~ 186 (604)
T 3k1j_A 107 KTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGT 186 (604)
T ss_dssp EEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCC
T ss_pred EEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccc
Confidence 011111222222111 11
Q ss_pred c-hhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccce----------eEeeccceEEEeeeCCCCC
Q 002353 586 R-EWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGI----------VTSLQARCSVIAAANPVGG 654 (932)
Q Consensus 586 g-~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi----------~~~l~ar~sIIAAaNp~~G 654 (932)
+ ...+.+|.+..|++|+|||||++.|++..+..|+++|+++.+.+. |. ...++.++.||+|+|+...
T Consensus 187 g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~--g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~ 264 (604)
T 3k1j_A 187 PAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPIT--GQSEMSSGAMVRTEPVPCDFVLVAAGNLDTV 264 (604)
T ss_dssp CGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCB--CSCTTSGGGGCBCSCEECCCEEEEEECHHHH
T ss_pred cccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEec--ccccccccccCCCCccceeEEEEEecCHHHH
Confidence 1 123478999999999999999999999999999999999998764 33 4567889999999998521
Q ss_pred ccCCCCCcccccCCChhhhccccE---EEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccC
Q 002353 655 RYDSSKTFSENVELTDPIISRFDV---LCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREI 731 (932)
Q Consensus 655 ry~~~~~~~~ni~L~~~LLsRFDl---i~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (932)
-.++++|++||++ .+.+.+ ...
T Consensus 265 -----------~~l~~~l~~R~~v~~i~i~l~~---~~~----------------------------------------- 289 (604)
T 3k1j_A 265 -----------DKMHPALRSRIRGYGYEVYMRT---TMP----------------------------------------- 289 (604)
T ss_dssp -----------HHSCHHHHHHHHHHSEEEECCS---EEE-----------------------------------------
T ss_pred -----------hhcCHHHHHHhhccceEeeccc---ccc-----------------------------------------
Confidence 1589999999984 333311 100
Q ss_pred CCCCCCHHHHHHHHHHHhh-----cCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCC
Q 002353 732 DPEILPQDLLKKYITYAKL-----NVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQH 806 (932)
Q Consensus 732 ~~~~i~~~~LrkyI~yar~-----~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~ 806 (932)
...+.++.|+.+..+ ...|.++++|...|.++|..+ ....+.+++++|+|.+++|.|.++|+++.++.
T Consensus 290 ----~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~---~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~ 362 (604)
T 3k1j_A 290 ----DTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKR---AGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKY 362 (604)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHT---TCSTTEEECCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred ----CCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhh---hccccccccCHHHHHHHHHHHHHHHHhcCccc
Confidence 122334444432222 235789999999999988622 22223567899999999999999999999999
Q ss_pred cCHHHHHHHHHH
Q 002353 807 VTQEDVNMAIRV 818 (932)
Q Consensus 807 Vt~~Dv~~AI~l 818 (932)
|+.+||..|+..
T Consensus 363 I~~edv~~A~~~ 374 (604)
T 3k1j_A 363 VEREDVIEAVKM 374 (604)
T ss_dssp BCHHHHHHHHHH
T ss_pred ccHHHHHHHHHh
Confidence 999999999854
No 9
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.79 E-value=1.6e-19 Score=198.96 Aligned_cols=269 Identities=17% Similarity=0.237 Sum_probs=175.3
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCc---EE-e-cCCCcc-c-ccccceeecCcccchhhhccCceeccCCCeeeeccc
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRA---VY-T-TGKGAS-A-VGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEF 608 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~---v~-~-~g~~ss-~-~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~ 608 (932)
.+|||+|+||||||++|+++++.+++. ++ . ++.... . ....++..+..++|......|.+..|++|++|||||
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi 105 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 105 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESC
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcCCCEEEEecc
Confidence 399999999999999999999987653 11 1 111110 0 001122233444555555678888999999999999
Q ss_pred cccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEE-ecCCCC
Q 002353 609 DKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCV-VKDVVD 687 (932)
Q Consensus 609 dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~-l~D~~d 687 (932)
+.|+...|..|+.+|+.+.+ .+.|.....+.+++||+|||+.... ....-.+.+.|++||..+.+ +.+..+
T Consensus 106 ~~l~~~~q~~Ll~~l~~~~~--~~~g~~~~~~~~~riI~atn~~l~~------~v~~g~fr~~L~~Rl~~~~i~lPpL~e 177 (304)
T 1ojl_A 106 GDISPLMQVRLLRAIQEREV--QRVGSNQTISVDVRLIAATHRDLAE------EVSAGRFRQDLYYRLNVVAIEMPSLRQ 177 (304)
T ss_dssp TTCCHHHHHHHHHHHHSSBC--CBTTBCCCCBCCCEEEEEESSCHHH------HHHHTSSCHHHHHHHSSEEEECCCSGG
T ss_pred ccCCHHHHHHHHHHHhcCEe--eecCCcccccCCeEEEEecCccHHH------HHHhCCcHHHHHhhcCeeEEeccCHHH
Confidence 99999999999999998874 5678777888999999999985311 11122567899999975433 322111
Q ss_pred hhHh-HHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHH
Q 002353 688 PVVD-EMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTH 766 (932)
Q Consensus 688 ~~~D-~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~ 766 (932)
...| ..++. .+|+++..-.. .-.+.+++++.+.|..
T Consensus 178 R~edi~~l~~------------------------------------------~~l~~~~~~~~-~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 178 RREDIPLLAD------------------------------------------HFLRRFAERNR-KVVKGFTPQAMDLLIH 214 (304)
T ss_dssp GGGGHHHHHH------------------------------------------HHHHHHHHHTT-CCCCCBCHHHHHHHHH
T ss_pred hHhhHHHHHH------------------------------------------HHHHHHHHHhc-cCccCCCHHHHHHHHc
Confidence 1111 12222 22332222111 1235799999999988
Q ss_pred HHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHhhhhcch
Q 002353 767 VYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDSFISTQKFGVQKALQRSFRKYMTFK 846 (932)
Q Consensus 767 ~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S~~~~~k~s~~~~l~~~f~~~~~~~ 846 (932)
| .||+++|+|+++++.+.+.|. ...|+.+|+...+. .. . . ....
T Consensus 215 ~------------~wpGnvReL~~~l~~~~~~~~---~~~i~~~~l~~~~~-------~~-~---~-----~~~~----- 258 (304)
T 1ojl_A 215 Y------------DWPGNIRELENAIERAVVLLT---GEYISERELPLAIA-------AT-P---I-----KTEY----- 258 (304)
T ss_dssp C------------CCSSHHHHHHHHHHHHHHHCC---SSSBCGGGSCGGGC-----------------------C-----
T ss_pred C------------CCCCCHHHHHHHHHHHHHhCC---CCcccHHhhhhhhc-------cC-C---C-----ccCC-----
Confidence 7 899999999999998877664 56788888754321 00 0 0 0000
Q ss_pred hhhHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHh
Q 002353 847 KEYNA-LLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQE 896 (932)
Q Consensus 847 ~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~ 896 (932)
...+ .+..+.+.++..+|+..+.+.. .++..++|+..+|++++++
T Consensus 259 -~l~~~~~~~~e~~~i~~~l~~~~gn~~----~aA~~Lgi~r~tl~~kl~~ 304 (304)
T 1ojl_A 259 -SGEIQPLVDVEKEVILAALEKTGGNKT----EAARQLGITRKTLLAKLSR 304 (304)
T ss_dssp -CSSCCCHHHHHHHHHHHHHHTTTTCHH----HHHHHHTSCHHHHHHHTCC
T ss_pred -CcchhhHHHHHHHHHHHHHHHcCCCHH----HHHHHHCcCHHHHHHHHhC
Confidence 0111 3566788899998887665444 6678999999999998763
No 10
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.70 E-value=7.3e-17 Score=175.91 Aligned_cols=268 Identities=16% Similarity=0.221 Sum_probs=163.4
Q ss_pred HHHHHhhcccccChHHHHHHHhhhhhcCccc-cccCcc-cccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecC-CCc
Q 002353 494 ERIIKSIAPSIYGHEDIKTALALSMFGGQEK-NVKGKH-RLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTG-KGA 570 (932)
Q Consensus 494 ~~l~~siap~I~G~~~vK~aillaL~gg~~k-~~~~~~-~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g-~~s 570 (932)
+.+..++.+.|+|++.+|+++..++.....+ ....+. .-+...++||+||||||||++|+++++.+...++... ...
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~ 86 (310)
T 1ofh_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (310)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhc
Confidence 4577788889999999999999887652100 000000 0012338999999999999999999998866544321 111
Q ss_pred ccccccceeecCcccchhhhccCceecc-CCCeeeeccccccCcch------------hhhHHHHHhhceeeeeccceeE
Q 002353 571 SAVGLTAAVHKDPVTREWTLEGGALVLA-DRGICLIDEFDKMNDQD------------RVSIHEAMEQQSISISKAGIVT 637 (932)
Q Consensus 571 s~~gLta~v~kd~~~g~~~le~Gal~lA-d~GIl~IDE~dkm~~~~------------~~~L~eamEqq~isi~kagi~~ 637 (932)
...+..+..........+...+|.+..+ .++|+||||++++.... +..|+.+|+.+.+.. +.+ .
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~-~~~--~ 163 (310)
T 1ofh_A 87 TEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST-KHG--M 163 (310)
T ss_dssp SSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEE-TTE--E
T ss_pred ccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEec-ccc--c
Confidence 1111111000000001111123455444 47999999999999876 788999999876544 333 2
Q ss_pred eeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCc
Q 002353 638 SLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSK 717 (932)
Q Consensus 638 ~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~ 717 (932)
.-..++.+|+++|+... ....++++|++||++.+.+ ..++.+.-..+ +..+.
T Consensus 164 ~~~~~~~~i~~~~~~~~---------~~~~l~~~l~~R~~~~i~~-~~~~~~~~~~i----l~~~~-------------- 215 (310)
T 1ofh_A 164 VKTDHILFIASGAFQVA---------RPSDLIPELQGRLPIRVEL-TALSAADFERI----LTEPH-------------- 215 (310)
T ss_dssp EECTTCEEEEEECCSSS---------CGGGSCHHHHHTCCEEEEC-CCCCHHHHHHH----HHSST--------------
T ss_pred ccCCcEEEEEcCCcccC---------CcccCCHHHHhhCCceEEc-CCcCHHHHHHH----HHhhH--------------
Confidence 23557889999875321 0126889999999977776 33443222222 22110
Q ss_pred cchhhhhhhhcccCCCCCCCHHHHHHHHHHHh-hcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHH
Q 002353 718 NESEEDIQVADREIDPEILPQDLLKKYITYAK-LNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSE 796 (932)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar-~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAe 796 (932)
..++++|...++ ....+.+++++.+.|.++....+.. ...+++|+|.++++.+.
T Consensus 216 --------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~-----~~~g~~R~l~~~l~~~~ 270 (310)
T 1ofh_A 216 --------------------ASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEK-----TENIGARRLHTVMERLM 270 (310)
T ss_dssp --------------------TCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHH-----SCCCTTHHHHHHHHHHS
T ss_pred --------------------HHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccc-----ccccCcHHHHHHHHHHH
Confidence 024555555433 2334579999999999986543322 12478999999999877
Q ss_pred HHHHhhCCC------CcCHHHHHHHHH
Q 002353 797 AHARMRLRQ------HVTQEDVNMAIR 817 (932)
Q Consensus 797 A~Akl~lr~------~Vt~~Dv~~AI~ 817 (932)
+.+.+.... .|+.+||..|+.
T Consensus 271 ~~~~~~~~~~~~~~~~i~~~~v~~~l~ 297 (310)
T 1ofh_A 271 DKISFSASDMNGQTVNIDAAYVADALG 297 (310)
T ss_dssp HHHHHHGGGCTTCEEEECHHHHHHHTC
T ss_pred HhhhcCCccccCCEEEEeeHHHHHHHH
Confidence 655443322 499999988864
No 11
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.69 E-value=5.7e-17 Score=174.07 Aligned_cols=210 Identities=16% Similarity=0.215 Sum_probs=131.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc---EEe-cCCCccc----ccccceeecCcccchhhhccCceeccCCCeeeeccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA---VYT-TGKGASA----VGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEF 608 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~---v~~-~g~~ss~----~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~ 608 (932)
+|||+|+||||||++|+++++.+++. +.. .....+. ..+. +..+...+|......|.+..+++|++||||+
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi 109 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELF-GHEAGAFTGAQKRHPGRFERADGGTLFLDEL 109 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHH-CCC---------CCCCHHHHTTTSEEEEESG
T ss_pred CEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhc-CCcccccccccccccchhhhcCCcEEEEech
Confidence 99999999999999999999988642 221 1111000 0011 1111222333333467777788999999999
Q ss_pred cccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccE-EEEecCCCC
Q 002353 609 DKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDV-LCVVKDVVD 687 (932)
Q Consensus 609 dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDl-i~~l~D~~d 687 (932)
+.++...+..|+.+|+++.+ .+.|.....+.+++||+|+|+..... ...-.+.++|++||.. .+.+.+..+
T Consensus 110 ~~l~~~~q~~Ll~~l~~~~~--~~~g~~~~~~~~~~iI~atn~~~~~~------~~~~~~~~~L~~Rl~~~~i~lp~L~~ 181 (265)
T 2bjv_A 110 ATAPMMVQEKLLRVIEYGEL--ERVGGSQPLQVNVRLVCATNADLPAM------VNEGTFRADLLDALAFDVVQLPPLRE 181 (265)
T ss_dssp GGSCHHHHHHHHHHHHHCEE--CCCCC--CEECCCEEEEEESSCHHHH------HHHTSSCHHHHHHHCSEEEECCCGGG
T ss_pred HhcCHHHHHHHHHHHHhCCe--ecCCCcccccCCeEEEEecCcCHHHH------HHcCCccHHHHHhhcCcEEeCCChhh
Confidence 99999999999999999874 45666666778899999999853211 1112578999999974 344422211
Q ss_pred hhHh-HHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHH
Q 002353 688 PVVD-EMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTH 766 (932)
Q Consensus 688 ~~~D-~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~ 766 (932)
...| ..++++ +|+++..-....+.|.+++++.+.|..
T Consensus 182 R~~di~~l~~~------------------------------------------~l~~~~~~~~~~~~~~~~~~a~~~L~~ 219 (265)
T 2bjv_A 182 RESDIMLMAEY------------------------------------------FAIQMCREIKLPLFPGFTERARETLLN 219 (265)
T ss_dssp CHHHHHHHHHH------------------------------------------HHHHHHHHTTCSSCCCBCHHHHHHHHH
T ss_pred hhHHHHHHHHH------------------------------------------HHHHHHHHhCCCcccCcCHHHHHHHHh
Confidence 1111 122222 222222111111125799999998887
Q ss_pred HHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHH
Q 002353 767 VYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDV 812 (932)
Q Consensus 767 ~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv 812 (932)
+ .||.++|+|+++++.+.+.+. ...|+.+|+
T Consensus 220 ~------------~~~gn~reL~~~l~~~~~~~~---~~~i~~~~l 250 (265)
T 2bjv_A 220 Y------------RWPGNIRELKNVVERSVYRHG---TSDYPLDDI 250 (265)
T ss_dssp S------------CCTTHHHHHHHHHHHHHHHHC---CSSSCBCCC
T ss_pred C------------CCCCCHHHHHHHHHHHHHhCC---CCcCcHHHc
Confidence 6 899999999999998877664 456766665
No 12
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.68 E-value=7.8e-17 Score=182.12 Aligned_cols=272 Identities=15% Similarity=0.183 Sum_probs=149.2
Q ss_pred HHHHhhcccccChHHHHHHHhhhhhcCcccccc------------------CcccccCCceEEEeCCCCchHHHHHHHHH
Q 002353 495 RIIKSIAPSIYGHEDIKTALALSMFGGQEKNVK------------------GKHRLRGDINVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 495 ~l~~siap~I~G~~~vK~aillaL~gg~~k~~~------------------~~~~~RgdinvLLvGdPGTGKS~Lak~va 556 (932)
.+...+...|+|++.+|++|..++.....+... .+...++..|+||+||||||||++|++++
T Consensus 14 ~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la 93 (376)
T 1um8_A 14 ELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLA 93 (376)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHH
Confidence 455566678999999999999887422111000 00011244599999999999999999999
Q ss_pred HhCCCcEEecCCC-cccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcc--------------hhhhHHH
Q 002353 557 KTGQRAVYTTGKG-ASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQ--------------DRVSIHE 621 (932)
Q Consensus 557 ~~~~r~v~~~g~~-ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~--------------~~~~L~e 621 (932)
+.+...++..... .+..++.+........+.+....|.+..+.+||+||||+++|... .+..|+.
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~ 173 (376)
T 1um8_A 94 KHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLK 173 (376)
T ss_dssp HHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHH
T ss_pred HHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHH
Confidence 9987665542111 111122221111111122223345666778999999999999988 8899999
Q ss_pred HHhhceeeeeccceeEeeccc--------eEEEeeeCCCC------CccC-------CC-C------Ccc--------cc
Q 002353 622 AMEQQSISISKAGIVTSLQAR--------CSVIAAANPVG------GRYD-------SS-K------TFS--------EN 665 (932)
Q Consensus 622 amEqq~isi~kagi~~~l~ar--------~sIIAAaNp~~------Gry~-------~~-~------~~~--------~n 665 (932)
+|+.+.+++...|.....+.+ +.+|+|+|... .|+. .. . .+. ..
T Consensus 174 ~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 253 (376)
T 1um8_A 174 IVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVT 253 (376)
T ss_dssp HHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHH
T ss_pred HhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhh
Confidence 999888777666665544444 45555555311 1110 00 0 000 02
Q ss_pred cCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHH
Q 002353 666 VELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYI 745 (932)
Q Consensus 666 i~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI 745 (932)
..+.++|++||+.++.+.+. +.+.-..++ ... -..++++|.
T Consensus 254 ~~~~p~l~~R~~~~i~~~~l-~~~~l~~i~----~~~----------------------------------~~~~~~~~~ 294 (376)
T 1um8_A 254 YGLIPELIGRLPVLSTLDSI-SLEAMVDIL----QKP----------------------------------KNALIKQYQ 294 (376)
T ss_dssp TTCCHHHHTTCCEEEECCCC-CHHHHHHHH----HSS----------------------------------TTCHHHHHH
T ss_pred cCCChHHhcCCCceeeccCC-CHHHHHHHH----hhh----------------------------------HHHHHHHHH
Confidence 35789999999988776433 222112222 110 001344444
Q ss_pred HHH-hhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCC------CcCHHHHHHH
Q 002353 746 TYA-KLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQ------HVTQEDVNMA 815 (932)
Q Consensus 746 ~ya-r~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~------~Vt~~Dv~~A 815 (932)
... .......+++++.+.|.++.. ..+.++|.|.+++..+...+-.+... .|+.+++..+
T Consensus 295 ~~~~~~~~~~~~~~~a~~~l~~~~~----------~~~~~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 361 (376)
T 1um8_A 295 QLFKMDEVDLIFEEEAIKEIAQLAL----------ERKTGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQ 361 (376)
T ss_dssp HHHHTTTCEEEECHHHHHHHHHHHH----------HTTCTGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTS
T ss_pred HHHhhcCceEEECHHHHHHHHHHhc----------ccccCcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCC
Confidence 422 222345799999999988722 22478999999998766654443322 5888887543
No 13
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.68 E-value=4.3e-16 Score=172.88 Aligned_cols=218 Identities=18% Similarity=0.233 Sum_probs=148.5
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeec
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHK 581 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~k 581 (932)
..++|++.+++.+...+....... ....||||+|+||||||++|+++++.+...++... ++...
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~-------~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~---------~~~~~ 92 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRN-------ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTA---------APMIE 92 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTT-------SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE---------GGGCC
T ss_pred HHhCChHHHHHHHHHHHHHHHhcC-------CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec---------chhcc
Confidence 458899999988876665431100 11238999999999999999999998766544321 10000
Q ss_pred CcccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccc------eeEeeccceEEEeeeCCCCCc
Q 002353 582 DPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAG------IVTSLQARCSVIAAANPVGGR 655 (932)
Q Consensus 582 d~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kag------i~~~l~ar~sIIAAaNp~~Gr 655 (932)
. .+. +.......+++|++||||++.|+...+..|+.+|+++.+.+..++ ....++ ++.+|+|||...
T Consensus 93 ~--~~~--~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn~~~-- 165 (338)
T 3pfi_A 93 K--SGD--LAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATTRAG-- 165 (338)
T ss_dssp S--HHH--HHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC-CCEEEEEESCGG--
T ss_pred c--hhH--HHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC-CeEEEEeCCCcc--
Confidence 0 011 111111246789999999999999999999999999876543221 111223 589999999843
Q ss_pred cCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCC
Q 002353 656 YDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEI 735 (932)
Q Consensus 656 y~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (932)
.+.++|++||+.++.+. .+
T Consensus 166 -----------~l~~~L~~R~~~~i~l~-~~------------------------------------------------- 184 (338)
T 3pfi_A 166 -----------MLSNPLRDRFGMQFRLE-FY------------------------------------------------- 184 (338)
T ss_dssp -----------GSCHHHHTTCSEEEECC-CC-------------------------------------------------
T ss_pred -----------ccCHHHHhhcCEEeeCC-Cc-------------------------------------------------
Confidence 58899999999888872 22
Q ss_pred CCHHHHHHHHH-HHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHH
Q 002353 736 LPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNM 814 (932)
Q Consensus 736 i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~ 814 (932)
+.+.+..++. +++. ....+++++.+.|.+ .|++++|.+.++++.+...|.+.....|+.+++..
T Consensus 185 -~~~e~~~il~~~~~~-~~~~~~~~~~~~l~~-------------~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~ 249 (338)
T 3pfi_A 185 -KDSELALILQKAALK-LNKTCEEKAALEIAK-------------RSRSTPRIALRLLKRVRDFADVNDEEIITEKRANE 249 (338)
T ss_dssp -CHHHHHHHHHHHHHH-TTCEECHHHHHHHHH-------------TTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred -CHHHHHHHHHHHHHh-cCCCCCHHHHHHHHH-------------HHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHH
Confidence 2222233333 2222 345678888877766 47899999999999999899999899999999988
Q ss_pred HHHH
Q 002353 815 AIRV 818 (932)
Q Consensus 815 AI~l 818 (932)
++..
T Consensus 250 ~~~~ 253 (338)
T 3pfi_A 250 ALNS 253 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 14
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.68 E-value=1.1e-16 Score=182.10 Aligned_cols=214 Identities=17% Similarity=0.244 Sum_probs=149.4
Q ss_pred CceEEEeCCCCchHHHHHHHHHHhCCCc---EEecCCCcccc----cccceeecCcccchhhhccCceeccCCCeeeecc
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKTGQRA---VYTTGKGASAV----GLTAAVHKDPVTREWTLEGGALVLADRGICLIDE 607 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~~~r~---v~~~g~~ss~~----gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE 607 (932)
+.+|||.|++||||+.+|+++|..+++. +......+... ...++..+..++|.....+|.+..|++|++||||
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlflde 239 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDE 239 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEES
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcC
Confidence 4589999999999999999999998763 22211111111 1122344555666666678999999999999999
Q ss_pred ccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEE-ecCCC
Q 002353 608 FDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCV-VKDVV 686 (932)
Q Consensus 608 ~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~-l~D~~ 686 (932)
|+.|+...|..|+++|+++.+ .+.|.....+.+++||+|||...... ...-.+.+.|+.|+..+.+ +....
T Consensus 240 i~~l~~~~q~~Ll~~l~~~~~--~~~g~~~~~~~~~rii~at~~~l~~~------~~~g~fr~dl~~rl~~~~i~lPpLr 311 (387)
T 1ny5_A 240 IGELSLEAQAKLLRVIESGKF--YRLGGRKEIEVNVRILAATNRNIKEL------VKEGKFREDLYYRLGVIEIEIPPLR 311 (387)
T ss_dssp GGGCCHHHHHHHHHHHHHSEE--CCBTCCSBEECCCEEEEEESSCHHHH------HHTTSSCHHHHHHHTTEEEECCCGG
T ss_pred hhhCCHHHHHHHHHHHhcCcE--EeCCCCceeeccEEEEEeCCCCHHHH------HHcCCccHHHHHhhcCCeecCCcch
Confidence 999999999999999999984 46777778889999999999854211 1223566778878765443 32211
Q ss_pred ChhHh-HHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHH
Q 002353 687 DPVVD-EMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKL 764 (932)
Q Consensus 687 d~~~D-~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L 764 (932)
+...| ..|+ ..+|++|.. +.+ -.+.+++++.+.|
T Consensus 312 eR~~Di~~l~------------------------------------------~~~l~~~~~~~~~--~~~~~~~~a~~~l 347 (387)
T 1ny5_A 312 ERKEDIIPLA------------------------------------------NHFLKKFSRKYAK--EVEGFTKSAQELL 347 (387)
T ss_dssp GCHHHHHHHH------------------------------------------HHHHHHHHHHTTC--CCCEECHHHHHHH
T ss_pred hccccHHHHH------------------------------------------HHHHHHHHHHcCC--CCCCCCHHHHHHH
Confidence 21122 2222 233443332 111 1346999999999
Q ss_pred HHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHH
Q 002353 765 THVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMA 815 (932)
Q Consensus 765 ~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~A 815 (932)
..| +||+|+|+|+++|+.+...|. ...|+.+|+...
T Consensus 348 ~~~------------~wpGNvreL~~~i~~~~~~~~---~~~i~~~~l~~~ 383 (387)
T 1ny5_A 348 LSY------------PWYGNVRELKNVIERAVLFSE---GKFIDRGELSCL 383 (387)
T ss_dssp HHS------------CCTTHHHHHHHHHHHHHHHCC---SSEECHHHHHHH
T ss_pred HhC------------CCCcHHHHHHHHHHHHHHhCC---CCcCcHHHCcHh
Confidence 987 999999999999998877664 568898888643
No 15
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.66 E-value=5e-17 Score=182.96 Aligned_cols=259 Identities=16% Similarity=0.216 Sum_probs=145.5
Q ss_pred HHHhhcccccChHHHHHHHhhhhhcCccccccC---cccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCc-c
Q 002353 496 IIKSIAPSIYGHEDIKTALALSMFGGQEKNVKG---KHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGA-S 571 (932)
Q Consensus 496 l~~siap~I~G~~~vK~aillaL~gg~~k~~~~---~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~s-s 571 (932)
+...+...|+|++.+|+.+..++.......... ........||||+||||||||++|+++++.+...++...... .
T Consensus 9 l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~ 88 (363)
T 3hws_A 9 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLT 88 (363)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhc
Confidence 444555568999999999988774221110000 000113349999999999999999999999877665431111 0
Q ss_pred cccccceeecCcccchhhhccCceeccCCCeeeeccccccCcc--------------hhhhHHHHHhhceeeeeccceeE
Q 002353 572 AVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQ--------------DRVSIHEAMEQQSISISKAGIVT 637 (932)
Q Consensus 572 ~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~--------------~~~~L~eamEqq~isi~kagi~~ 637 (932)
..++.+.......++.+...+|.+..+.+||+||||+++|+.. .+..|+++|+...+.+...+...
T Consensus 89 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~ 168 (363)
T 3hws_A 89 EAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRK 168 (363)
T ss_dssp TCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC-----------
T ss_pred ccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccc
Confidence 0111111111111222233345566678899999999999987 79999999994444443333322
Q ss_pred ee--------ccceEEEeeeCCCC---------Cc-----cCCCC----------Cccccc--------CCChhhhcccc
Q 002353 638 SL--------QARCSVIAAANPVG---------GR-----YDSSK----------TFSENV--------ELTDPIISRFD 677 (932)
Q Consensus 638 ~l--------~ar~sIIAAaNp~~---------Gr-----y~~~~----------~~~~ni--------~L~~~LLsRFD 677 (932)
.- .+++.+|+++|... ++ |.... .+.+.+ .+.++|++|||
T Consensus 169 ~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~ 248 (363)
T 3hws_A 169 HPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLP 248 (363)
T ss_dssp -----CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCC
T ss_pred cCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccC
Confidence 22 23344555555421 00 00000 000111 17899999999
Q ss_pred EEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHH-HhhcCCCcC
Q 002353 678 VLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITY-AKLNVFPRL 756 (932)
Q Consensus 678 li~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~y-ar~~~~P~L 756 (932)
.++.+ ..++.+.-..|+.. +. ..++++|... ....+...+
T Consensus 249 ~~~~~-~pl~~~~~~~I~~~----~~----------------------------------~~l~~~~~~~~~~~~~~l~~ 289 (363)
T 3hws_A 249 VVATL-NELSEEALIQILKE----PK----------------------------------NALTKQYQALFNLEGVDLEF 289 (363)
T ss_dssp EEEEC-CCCCHHHHHHHHHS----ST----------------------------------TCHHHHHHHHHHTTTCEEEE
T ss_pred eeeec-CCCCHHHHHHHHHH----HH----------------------------------HHHHHHHHHHHHhcCceEEE
Confidence 98876 33443332333221 00 1245555553 323345679
Q ss_pred ChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhC
Q 002353 757 HDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRL 803 (932)
Q Consensus 757 s~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~l 803 (932)
++++.+.|.++-. .|++++|+|+++|.-+...+-.++
T Consensus 290 ~~~a~~~L~~~~~----------~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 290 RDEALDAIAKKAM----------ARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp CHHHHHHHHHHHH----------HTTCTTTTHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHhhc----------CCccCchHHHHHHHHHHHHHHHhc
Confidence 9999999987522 688999999999987766655444
No 16
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.65 E-value=3e-16 Score=177.29 Aligned_cols=203 Identities=20% Similarity=0.235 Sum_probs=141.2
Q ss_pred CceEEEeCCCCchHHHHHHHHHHhCCCc--EEe--cCCCcc--cccccceeecCcccchhhhccCceeccCCCeeeeccc
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKTGQRA--VYT--TGKGAS--AVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEF 608 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~~~r~--v~~--~g~~ss--~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~ 608 (932)
+.+||+.|++||||+.+++++|..+++. +.. ++.-.. .....++..+..++|.....+|.+..|++|++|||||
T Consensus 152 ~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei 231 (368)
T 3dzd_A 152 KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEV 231 (368)
T ss_dssp CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETG
T ss_pred chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCCCeEEecCh
Confidence 4489999999999999999999998765 222 111110 0111234455666776666789999999999999999
Q ss_pred cccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEE-ecCCCC
Q 002353 609 DKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCV-VKDVVD 687 (932)
Q Consensus 609 dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~-l~D~~d 687 (932)
+.|+...|..|+.+|+.+.+ .+.|.....+.++++|+|||...... ...-.+.+.|+.|+..+-+ +....+
T Consensus 232 ~~l~~~~Q~~Ll~~l~~~~~--~~~g~~~~~~~~~rii~at~~~l~~~------v~~g~fr~dL~~rl~~~~i~lPpLre 303 (368)
T 3dzd_A 232 GELDQRVQAKLLRVLETGSF--TRLGGNQKIEVDIRVISATNKNLEEE------IKKGNFREDLYYRLSVFQIYLPPLRE 303 (368)
T ss_dssp GGSCHHHHHHHHHHHHHSEE--CCBTCCCBEECCCEEEEEESSCHHHH------HHTTSSCHHHHHHHTSEEEECCCGGG
T ss_pred hhCCHHHHHHHHHHHHhCCc--ccCCCCcceeeeeEEEEecCCCHHHH------HHcCCccHHHHHHhCCeEEeCCChhh
Confidence 99999999999999999984 46777778889999999999754211 1223567788888876543 311111
Q ss_pred hhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHH
Q 002353 688 PVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHV 767 (932)
Q Consensus 688 ~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~ 767 (932)
...| ...+-..+|++|..--. ...+.++++|.+.|..|
T Consensus 304 R~~D-----------------------------------------i~~l~~~~l~~~~~~~~-~~~~~~~~~a~~~L~~~ 341 (368)
T 3dzd_A 304 RGKD-----------------------------------------VILLAEYFLKKFAKEYK-KNCFELSEETKEYLMKQ 341 (368)
T ss_dssp STTH-----------------------------------------HHHHHHHHHHHHHHHTT-CCCCCBCHHHHHHHHTC
T ss_pred chhh-----------------------------------------HHHHHHHHHHHHHHHcC-CCCCCcCHHHHHHHHhC
Confidence 1111 11222233444332111 12357999999999988
Q ss_pred HHHHHhcccCCCCcccCHHHHHHHHHHHHHHH
Q 002353 768 YAELRRESSHGQGVPIAVRHIESMIRMSEAHA 799 (932)
Q Consensus 768 Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~A 799 (932)
+||+|+|+|+++|+.+...+
T Consensus 342 ------------~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 342 ------------EWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp ------------CCTTHHHHHHHHHHHHHHTC
T ss_pred ------------CCCcHHHHHHHHHHHHHHhC
Confidence 99999999999999876654
No 17
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.63 E-value=6.6e-16 Score=168.97 Aligned_cols=244 Identities=13% Similarity=0.112 Sum_probs=148.8
Q ss_pred HHHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCc---EEecCCC
Q 002353 493 GERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRA---VYTTGKG 569 (932)
Q Consensus 493 ~~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~---v~~~g~~ 569 (932)
...+.+.+...++|++.+++.+..++..+... .... -+..-++||+||||||||++|+++++.+.+. ++.....
T Consensus 8 l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~-~~~~--~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~ 84 (311)
T 4fcw_A 8 LLRLEEELHKRVVGQDEAIRAVADAIRRARAG-LKDP--NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 84 (311)
T ss_dssp HHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHT-CSCT--TSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC-CCCC--CCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc
Confidence 34567778888999999999888777654210 0000 1122389999999999999999999986432 2221110
Q ss_pred cc-----cccccceeecCcccch--hhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccc
Q 002353 570 AS-----AVGLTAAVHKDPVTRE--WTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQAR 642 (932)
Q Consensus 570 ss-----~~gLta~v~kd~~~g~--~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar 642 (932)
.. ...+.+.... ..+. ...-.+++..+.+||+||||++++++..+..|+.+|+.+.+...+ |.... -.+
T Consensus 85 ~~~~~~~~~~l~g~~~~--~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~-~~~~~-~~~ 160 (311)
T 4fcw_A 85 EYMEKHAVSRLIGAPPG--YVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSH-GRTVD-FRN 160 (311)
T ss_dssp GCCSTTHHHHHHCCCTT--STTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTT-SCEEE-CTT
T ss_pred cccccccHHHhcCCCCc--cccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCC-CCEEE-CCC
Confidence 00 0011111000 0000 000112344456799999999999999999999999998876422 22222 235
Q ss_pred eEEEeeeCCCC-------CccCCCCCccc------ccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCC
Q 002353 643 CSVIAAANPVG-------GRYDSSKTFSE------NVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKG 709 (932)
Q Consensus 643 ~sIIAAaNp~~-------Gry~~~~~~~~------ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~ 709 (932)
+.+|+|||+.. +.......+.+ .-.+.++|++||+.++.+. .++.+.-..|+.+.+.
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~-p~~~~~~~~i~~~~l~--------- 230 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFR-PLTKEQIRQIVEIQMS--------- 230 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECC-CCCHHHHHHHHHHHTH---------
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeC-CCCHHHHHHHHHHHHH---------
Confidence 67999999831 11111112222 1268899999999888873 3444433444444332
Q ss_pred CCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCc--ccCHH
Q 002353 710 VNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGV--PIAVR 786 (932)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~--pitvR 786 (932)
++.. +.+....+.+++++.+.|.++ .| |+++|
T Consensus 231 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~~gn~R 265 (311)
T 4fcw_A 231 ---------------------------------YLRARLAEKRISLELTEAAKDFLAER------------GYDPVFGAR 265 (311)
T ss_dssp ---------------------------------HHHHHHHTTTCEEEECHHHHHHHHHH------------SCBTTTBTT
T ss_pred ---------------------------------HHHHHHHhCCcEEEeCHHHHHHHHHh------------CCCccCCch
Confidence 2211 222234568999999999987 67 89999
Q ss_pred HHHHHHHHHHHH
Q 002353 787 HIESMIRMSEAH 798 (932)
Q Consensus 787 ~LEslIRlAeA~ 798 (932)
+|+++++.+...
T Consensus 266 ~L~~~i~~~~~~ 277 (311)
T 4fcw_A 266 PLRRVIQRELET 277 (311)
T ss_dssp THHHHHHHHTHH
T ss_pred hHHHHHHHHHHH
Confidence 999999865543
No 18
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.63 E-value=1e-15 Score=168.38 Aligned_cols=271 Identities=18% Similarity=0.197 Sum_probs=167.2
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEec-CCCcccccccceee
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTT-GKGASAVGLTAAVH 580 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~-g~~ss~~gLta~v~ 580 (932)
..++|++.++..+...+....... +...++||+|+||||||++|+++++.+...++.. +.....
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~-------~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~-------- 76 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARK-------EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK-------- 76 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHC-------SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS--------
T ss_pred HHhhCHHHHHHHHHHHHHHHHccC-------CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC--------
Confidence 357888888777665543211000 1123899999999999999999999876554321 111000
Q ss_pred cCcccchhhhccCce--eccCCCeeeeccccccCcchhhhHHHHHhhceeeeecc-----ceeEeeccceEEEeeeCCCC
Q 002353 581 KDPVTREWTLEGGAL--VLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKA-----GIVTSLQARCSVIAAANPVG 653 (932)
Q Consensus 581 kd~~~g~~~le~Gal--~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~ka-----gi~~~l~ar~sIIAAaNp~~ 653 (932)
.+.. .+.+ .++++|++||||++.|+...+..|+.+|+++.+.+--. ........++.+|+|+|...
T Consensus 77 ----~~~l---~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~ 149 (324)
T 1hqc_A 77 ----PGDL---AAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPG 149 (324)
T ss_dssp ----HHHH---HHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCS
T ss_pred ----hHHH---HHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcc
Confidence 0000 0111 13678999999999999999999999999887554211 11122234789999999863
Q ss_pred CccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCC
Q 002353 654 GRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDP 733 (932)
Q Consensus 654 Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (932)
.+.++|++||+.++.+. .++.
T Consensus 150 -------------~~~~~l~~R~~~~i~l~-~~~~--------------------------------------------- 170 (324)
T 1hqc_A 150 -------------LITAPLLSRFGIVEHLE-YYTP--------------------------------------------- 170 (324)
T ss_dssp -------------SCSCSTTTTCSCEEECC-CCCH---------------------------------------------
T ss_pred -------------cCCHHHHhcccEEEecC-CCCH---------------------------------------------
Confidence 56788999998777762 2221
Q ss_pred CCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHH
Q 002353 734 EILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDV 812 (932)
Q Consensus 734 ~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv 812 (932)
+.+..++. +++. ....+++++.+.|..+ +++++|.+.++++.+...|.+.....|+.+++
T Consensus 171 -----~e~~~~l~~~~~~-~~~~~~~~~~~~l~~~-------------~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~ 231 (324)
T 1hqc_A 171 -----EELAQGVMRDARL-LGVRITEEAALEIGRR-------------SRGTMRVAKRLFRRVRDFAQVAGEEVITRERA 231 (324)
T ss_dssp -----HHHHHHHHHHHHT-TTCCCCHHHHHHHHHH-------------SCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHH
T ss_pred -----HHHHHHHHHHHHh-cCCCCCHHHHHHHHHH-------------ccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 12222222 2222 2346788888887765 35789999999999888887777889999999
Q ss_pred HHHHHHHHhhhhhhhhhchHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHH
Q 002353 813 NMAIRVLLDSFISTQKFGVQKALQRSFRKYMTFKKEYNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLN 892 (932)
Q Consensus 813 ~~AI~l~~~S~~~~~k~s~~~~l~~~f~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 892 (932)
..++..+..+ +. . +....+.++...+.......- .....+..++++..++++
T Consensus 232 ~~~~~~~~~~-----~~----------------~------l~~~e~~~i~~~~~~~~g~~~-~~~~~a~~lgi~~~tl~~ 283 (324)
T 1hqc_A 232 LEALAALGLD-----EL----------------G------LEKRDREILEVLILRFGGGPV-GLATLATALSEDPGTLEE 283 (324)
T ss_dssp HHHHHHHTCC-----TT----------------C------CCHHHHHHHHHHHHHSCSSCC-CHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHhccc-----cc----------------C------CCHHHHHHHHHHHHHhcCCCc-hHHHHHHHhCCCHHHHHH
Confidence 8876543111 00 0 011123333333332211100 011345678899999999
Q ss_pred HHHhcCcc
Q 002353 893 RAQELEIY 900 (932)
Q Consensus 893 ~~~~~~i~ 900 (932)
+.+++++.
T Consensus 284 ~l~~~~i~ 291 (324)
T 1hqc_A 284 VHEPYLIR 291 (324)
T ss_dssp HTHHHHHH
T ss_pred HHhHHHHH
Confidence 99987763
No 19
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.54 E-value=9.4e-15 Score=173.20 Aligned_cols=241 Identities=20% Similarity=0.216 Sum_probs=139.2
Q ss_pred HhhcccccChHHHHHHHhhhhhc-CccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCC-C-ccccc
Q 002353 498 KSIAPSIYGHEDIKTALALSMFG-GQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGK-G-ASAVG 574 (932)
Q Consensus 498 ~siap~I~G~~~vK~aillaL~g-g~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~-~-ss~~g 574 (932)
+.+...++|++.+|+.+.-.+.- ...... .+ -++||+||||||||+||++++..+...+..... + .....
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~~~~-~g------~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~ 149 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLTKSL-KG------PILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESE 149 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHSSSC-CS------CEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcccC-CC------CEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhh
Confidence 33455689999999887533221 100011 11 289999999999999999999998765443211 1 01111
Q ss_pred ccceeecCcccchhhhccCc----eec--cCCCeeeeccccccCcchh----hhHHHHHhhcee-eeeccceeEeec-cc
Q 002353 575 LTAAVHKDPVTREWTLEGGA----LVL--ADRGICLIDEFDKMNDQDR----VSIHEAMEQQSI-SISKAGIVTSLQ-AR 642 (932)
Q Consensus 575 Lta~v~kd~~~g~~~le~Ga----l~l--Ad~GIl~IDE~dkm~~~~~----~~L~eamEqq~i-si~kagi~~~l~-ar 642 (932)
+.+.. + ...| ..+|. +.. ..++|+||||+++|....+ ..|+++|+.+.. .+...+...... .+
T Consensus 150 ~~g~~-~-~~ig---~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~ 224 (543)
T 3m6a_A 150 IRGHR-R-TYVG---AMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSK 224 (543)
T ss_dssp -------------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSS
T ss_pred hhhHH-H-HHhc---cCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccc
Confidence 11100 0 0001 01111 112 2667999999999998844 889999986432 222333333333 67
Q ss_pred eEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhh
Q 002353 643 CSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEE 722 (932)
Q Consensus 643 ~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~ 722 (932)
+.||+|+|+.. .++++|++||++ +.+ +.++......++...
T Consensus 225 v~iI~ttN~~~-------------~l~~aL~~R~~v-i~~-~~~~~~e~~~Il~~~------------------------ 265 (543)
T 3m6a_A 225 VLFIATANNLA-------------TIPGPLRDRMEI-INI-AGYTEIEKLEIVKDH------------------------ 265 (543)
T ss_dssp CEEEEECSSTT-------------TSCHHHHHHEEE-EEC-CCCCHHHHHHHHHHT------------------------
T ss_pred eEEEeccCccc-------------cCCHHHHhhcce-eee-CCCCHHHHHHHHHHH------------------------
Confidence 89999999865 789999999975 344 555555544443321
Q ss_pred hhhhhcccCCCCCCCHHHHHHHHHHHh-hcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHh
Q 002353 723 DIQVADREIDPEILPQDLLKKYITYAK-LNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARM 801 (932)
Q Consensus 723 ~~~~~~~~~~~~~i~~~~LrkyI~yar-~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl 801 (932)
+++++..... ......+++++...|...| +|+.++|+|++.|.-+...|..
T Consensus 266 -----------------l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~-----------~~~~~vR~L~~~i~~~~~~aa~ 317 (543)
T 3m6a_A 266 -----------------LLPKQIKEHGLKKSNLQLRDQAILDIIRYY-----------TREAGVRSLERQLAAICRKAAK 317 (543)
T ss_dssp -----------------HHHHHHHHTTCCGGGCEECHHHHHHHHHHH-----------CCCSSSHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHcCCCcccccCCHHHHHHHHHhC-----------ChhhchhHHHHHHHHHHHHHHH
Confidence 1222222111 0012357888888887765 7889999999888765555543
Q ss_pred h------CCCCcCHHHHHHHHH
Q 002353 802 R------LRQHVTQEDVNMAIR 817 (932)
Q Consensus 802 ~------lr~~Vt~~Dv~~AI~ 817 (932)
. ..-.|+.+|+..++.
T Consensus 318 ~~~~~~~~~~~It~~~l~~~Lg 339 (543)
T 3m6a_A 318 AIVAEERKRITVTEKNLQDFIG 339 (543)
T ss_dssp HHHTTCCSCCEECTTTTHHHHC
T ss_pred HHHhcCCcceecCHHHHHHHhC
Confidence 3 344689999888753
No 20
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.54 E-value=6.8e-14 Score=161.87 Aligned_cols=212 Identities=17% Similarity=0.221 Sum_probs=130.4
Q ss_pred ccccChHHHH---HHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccce
Q 002353 502 PSIYGHEDIK---TALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAA 578 (932)
Q Consensus 502 p~I~G~~~vK---~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~ 578 (932)
..++|++.++ +.+..++..+.. .++||+||||||||++|+.+++.+...++......... .
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~------------~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~----~ 89 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHL------------HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGV----K 89 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCC------------CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCH----H
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCC------------cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCH----H
Confidence 3588999988 666666655521 18999999999999999999999876654421110000 0
Q ss_pred eecCcccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCC
Q 002353 579 VHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDS 658 (932)
Q Consensus 579 v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~ 658 (932)
..+...... ......+.++|+||||++.|+...+..|+..||++. +.+|+|++...
T Consensus 90 ~ir~~~~~a----~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~---------------v~lI~att~n~----- 145 (447)
T 3pvs_A 90 EIREAIERA----RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT---------------ITFIGATTENP----- 145 (447)
T ss_dssp HHHHHHHHH----HHHHHTTCCEEEEEETTTCC------CCHHHHHTTS---------------CEEEEEESSCG-----
T ss_pred HHHHHHHHH----HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCc---------------eEEEecCCCCc-----
Confidence 000000000 001113467899999999999999999999999764 35677774422
Q ss_pred CCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCH
Q 002353 659 SKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQ 738 (932)
Q Consensus 659 ~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 738 (932)
...+.++|+|||.++. + ..++.+.-..+..+.+......
T Consensus 146 ------~~~l~~aL~sR~~v~~-l-~~l~~edi~~il~~~l~~~~~~--------------------------------- 184 (447)
T 3pvs_A 146 ------SFELNSALLSRARVYL-L-KSLSTEDIEQVLTQAMEDKTRG--------------------------------- 184 (447)
T ss_dssp ------GGSSCHHHHTTEEEEE-C-CCCCHHHHHHHHHHHHHCTTTS---------------------------------
T ss_pred ------ccccCHHHhCceeEEe-e-CCcCHHHHHHHHHHHHHHHhhh---------------------------------
Confidence 1278899999998433 4 3333332233333332210000
Q ss_pred HHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhh--CCCCcCHHHHHHHH
Q 002353 739 DLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMR--LRQHVTQEDVNMAI 816 (932)
Q Consensus 739 ~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~--lr~~Vt~~Dv~~AI 816 (932)
+. .-...+++++.+.|.++ |++++|.+.++++.+...|... ....||.+||..++
T Consensus 185 --------~~--~~~~~i~~~al~~L~~~-------------~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l 241 (447)
T 3pvs_A 185 --------YG--GQDIVLPDETRRAIAEL-------------VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIA 241 (447)
T ss_dssp --------ST--TSSEECCHHHHHHHHHH-------------HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHH
T ss_pred --------hc--cccCcCCHHHHHHHHHH-------------CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHH
Confidence 00 01346788888888875 4689999999999988877544 45689999998876
Q ss_pred H
Q 002353 817 R 817 (932)
Q Consensus 817 ~ 817 (932)
.
T Consensus 242 ~ 242 (447)
T 3pvs_A 242 G 242 (447)
T ss_dssp T
T ss_pred h
Confidence 4
No 21
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.53 E-value=2.6e-14 Score=156.32 Aligned_cols=240 Identities=14% Similarity=0.051 Sum_probs=138.3
Q ss_pred HHHHHhhcccccChHHHHHHHhhhhhcCc-cccc-cCc-ccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCc
Q 002353 494 ERIIKSIAPSIYGHEDIKTALALSMFGGQ-EKNV-KGK-HRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGA 570 (932)
Q Consensus 494 ~~l~~siap~I~G~~~vK~aillaL~gg~-~k~~-~~~-~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~s 570 (932)
..+...+...|+|++.+|+.+.-.+.... .... ..| ..-++..|+||+||||||||++|+++++.+....+.. ..
T Consensus 23 ~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~--~~ 100 (309)
T 3syl_A 23 KEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVR--KG 100 (309)
T ss_dssp HHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSS--SC
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcC--CC
Confidence 45666677789999999998873322100 0000 000 0012334899999999999999999988753210000 00
Q ss_pred ccccccceeecCcccch-hhhccCceeccCCCeeeecccccc---------CcchhhhHHHHHhhceeeeeccceeEeec
Q 002353 571 SAVGLTAAVHKDPVTRE-WTLEGGALVLADRGICLIDEFDKM---------NDQDRVSIHEAMEQQSISISKAGIVTSLQ 640 (932)
Q Consensus 571 s~~gLta~v~kd~~~g~-~~le~Gal~lAd~GIl~IDE~dkm---------~~~~~~~L~eamEqq~isi~kagi~~~l~ 640 (932)
....+.+........|. .....+.+..+.+||+||||++.+ +...+..|+.+|+.+ +
T Consensus 101 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~-------------~ 167 (309)
T 3syl_A 101 HLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN-------------R 167 (309)
T ss_dssp CEEEECGGGTCCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC-------------T
T ss_pred cEEEEcHHHhhhhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC-------------C
Confidence 00000000000000010 001133455567899999999977 666678899999864 2
Q ss_pred cceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccch
Q 002353 641 ARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNES 720 (932)
Q Consensus 641 ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~ 720 (932)
.++.||+++|+.. ......++++|.+||+.++.+ ..++.+.-..+.++
T Consensus 168 ~~~~~i~~~~~~~--------~~~~~~~~~~l~~R~~~~i~~-~~~~~~~~~~il~~----------------------- 215 (309)
T 3syl_A 168 DDLVVILAGYADR--------MENFFQSNPGFRSRIAHHIEF-PDYSDEELFEIAGH----------------------- 215 (309)
T ss_dssp TTCEEEEEECHHH--------HHHHHHHSTTHHHHEEEEEEE-CCCCHHHHHHHHHH-----------------------
T ss_pred CCEEEEEeCChHH--------HHHHHhhCHHHHHhCCeEEEc-CCcCHHHHHHHHHH-----------------------
Confidence 4568899998742 001113568999999988877 22332222222222
Q ss_pred hhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHH
Q 002353 721 EEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHAR 800 (932)
Q Consensus 721 ~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Ak 800 (932)
+++. ....+++++.+.|..+...++. ..|+.++|.+.++++.+...+.
T Consensus 216 --------------------------~l~~-~~~~~~~~~~~~l~~~~~~~~~-----~~~~gn~r~l~~~l~~a~~~~~ 263 (309)
T 3syl_A 216 --------------------------MLDD-QNYQMTPEAETALRAYIGLRRN-----QPHFANARSIRNALDRARLRQA 263 (309)
T ss_dssp --------------------------HHHH-TTCEECHHHHHHHHHHHHHHTT-----SSSCCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------HHHH-cCCCCCHHHHHHHHHHHHHhcc-----CCCCCcHHHHHHHHHHHHHHHH
Confidence 1221 2346778888888877654432 2789999999999998876554
Q ss_pred hh----CCCCcCHHHH
Q 002353 801 MR----LRQHVTQEDV 812 (932)
Q Consensus 801 l~----lr~~Vt~~Dv 812 (932)
.+ ....++.+|+
T Consensus 264 ~r~~~~~~~~~~~~~l 279 (309)
T 3syl_A 264 NRLFTASSGPLDARAL 279 (309)
T ss_dssp HHHHHC---CEEHHHH
T ss_pred HHHHhccCCCCCHHHH
Confidence 43 2355666665
No 22
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.49 E-value=2.1e-13 Score=167.92 Aligned_cols=238 Identities=14% Similarity=0.107 Sum_probs=146.9
Q ss_pred HHHHHHhhcccccChHHHHHHHhhhhh----cCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCC
Q 002353 493 GERIIKSIAPSIYGHEDIKTALALSMF----GGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGK 568 (932)
Q Consensus 493 ~~~l~~siap~I~G~~~vK~aillaL~----gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~ 568 (932)
...+.+.+...|+|++.++..+.-++. |..... +..-++||+||||||||++|+++++.++..++....
T Consensus 449 l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~-------~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~ 521 (758)
T 1r6b_X 449 LKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEH-------KPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDM 521 (758)
T ss_dssp HHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTT-------SCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHhcccCCCC-------CCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEec
Confidence 455777788999999998876665443 321111 112289999999999999999999998655443111
Q ss_pred C-----cccccccceeecCcccch--hhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeecc
Q 002353 569 G-----ASAVGLTAAVHKDPVTRE--WTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQA 641 (932)
Q Consensus 569 ~-----ss~~gLta~v~kd~~~g~--~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~a 641 (932)
+ .+...+.++.. . ..|. ...-.+++..+.+||+||||+++++++.+..|+++|+.+.++.. .|....+ .
T Consensus 522 s~~~~~~~~~~l~g~~~-g-~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~-~g~~~~~-~ 597 (758)
T 1r6b_X 522 SEYMERHTVSRLIGAPP-G-YVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDN-NGRKADF-R 597 (758)
T ss_dssp GGCSSSSCCSSSCCCCS-C-SHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEET-TTEEEEC-T
T ss_pred hhhcchhhHhhhcCCCC-C-CcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcC-CCCEEec-C
Confidence 0 01111221110 0 0110 00112345567789999999999999999999999999998763 3544444 6
Q ss_pred ceEEEeeeCCCCCc-------cCCC---CCcccc--cCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCC
Q 002353 642 RCSVIAAANPVGGR-------YDSS---KTFSEN--VELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKG 709 (932)
Q Consensus 642 r~sIIAAaNp~~Gr-------y~~~---~~~~~n--i~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~ 709 (932)
++.||+|+|+.... |... ...... -.+.++|++|||.++.+ ..++.+.-..++.+.+.
T Consensus 598 ~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~-~~l~~~~~~~i~~~~l~--------- 667 (758)
T 1r6b_X 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWF-DHLSTDVIHQVVDKFIV--------- 667 (758)
T ss_dssp TEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEEC-CCCCHHHHHHHHHHHHH---------
T ss_pred CeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceee-CCCCHHHHHHHHHHHHH---------
Confidence 78999999984311 1000 000011 16889999999988766 44444433444443322
Q ss_pred CCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccC--HH
Q 002353 710 VNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIA--VR 786 (932)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pit--vR 786 (932)
++.. +....+...+++++.+.|.++ .|+.+ +|
T Consensus 668 ---------------------------------~~~~~~~~~~~~~~~~~~a~~~l~~~------------~~~~~~g~R 702 (758)
T 1r6b_X 668 ---------------------------------ELQVQLDQKGVSLEVSQEARNWLAEK------------GYDRAMGAR 702 (758)
T ss_dssp ---------------------------------HHHHHHHHTTEEEEECHHHHHHHHHH------------HCBTTTBTT
T ss_pred ---------------------------------HHHHHHHHCCcEEEeCHHHHHHHHHh------------CCCcCCCch
Confidence 1111 222233457899999999886 45555 89
Q ss_pred HHHHHHHHHH
Q 002353 787 HIESMIRMSE 796 (932)
Q Consensus 787 ~LEslIRlAe 796 (932)
.|.++|+.+.
T Consensus 703 ~l~~~i~~~~ 712 (758)
T 1r6b_X 703 PMARVIQDNL 712 (758)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988887543
No 23
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.49 E-value=2.6e-13 Score=153.58 Aligned_cols=192 Identities=19% Similarity=0.244 Sum_probs=117.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceecc---CCCeeeeccccccCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLA---DRGICLIDEFDKMND 613 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lA---d~GIl~IDE~dkm~~ 613 (932)
+|||+||||||||++|+++|..+...++... ++. +...... .++..+. ..+..| ...|+||||+|.+..
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~~~~f~~v~-~s~---l~sk~vG---ese~~vr-~lF~~Ar~~aP~IIFiDEiDai~~ 255 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHTDCKFIRVS-GAE---LVQKYIG---EGSRMVR-ELFVMAREHAPSIIFMDEIDSIGS 255 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHHTCEEEEEE-GGG---GSCSSTT---HHHHHHH-HHHHHHHHTCSEEEEEESSSCCTT
T ss_pred ceEEeCCCCCCHHHHHHHHHHhhCCCceEEE-hHH---hhccccc---hHHHHHH-HHHHHHHHhCCceEeeecchhhcc
Confidence 7999999999999999999999887766531 111 1111100 0111111 011111 347999999999854
Q ss_pred ch-----------hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEEE
Q 002353 614 QD-----------RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLC 680 (932)
Q Consensus 614 ~~-----------~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~ 680 (932)
.. +..+.+.|.+- .|. .-..++.||||||.+. .|+++|++ |||..+
T Consensus 256 ~R~~~~~~~~~~~~~~l~~lL~~l------Dg~--~~~~~V~vIaATNrpd-------------~LDpAllRpGRfD~~I 314 (405)
T 4b4t_J 256 TRVEGSGGGDSEVQRTMLELLNQL------DGF--ETSKNIKIIMATNRLD-------------ILDPALLRPGRIDRKI 314 (405)
T ss_dssp SCSCSSSGGGGHHHHHHHHHHHHH------HTT--TCCCCEEEEEEESCSS-------------SSCHHHHSTTSSCCEE
T ss_pred CCCCCCCCCcHHHHHHHHHHHHhh------hcc--CCCCCeEEEeccCChh-------------hCCHhHcCCCcCceEE
Confidence 21 11233333210 011 0134578999999977 89999998 999999
Q ss_pred EecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhH
Q 002353 681 VVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPD 760 (932)
Q Consensus 681 ~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea 760 (932)
.+ +.|+...-..|. ..|.+..+. .+ +..
T Consensus 315 ~i-~lPd~~~R~~Il----~~~~~~~~l--------------------------------------------~~---dvd 342 (405)
T 4b4t_J 315 EF-PPPSVAARAEIL----RIHSRKMNL--------------------------------------------TR---GIN 342 (405)
T ss_dssp EC-CCCCHHHHHHHH----HHHHTTSBC--------------------------------------------CS---SCC
T ss_pred Ec-CCcCHHHHHHHH----HHHhcCCCC--------------------------------------------Cc---cCC
Confidence 88 666665544443 333332221 00 001
Q ss_pred HHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh
Q 002353 761 MEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLD 821 (932)
Q Consensus 761 ~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~ 821 (932)
.+.|++. .-..|.+.|+++++-|.-+|--+.+..|+.+|+..|+.-+..
T Consensus 343 l~~lA~~------------t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 343 LRKVAEK------------MNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp HHHHHHH------------CCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHH------------CCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhC
Confidence 1222221 223688999999999988887788899999999999876543
No 24
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.48 E-value=3.2e-13 Score=145.97 Aligned_cols=230 Identities=17% Similarity=0.163 Sum_probs=131.8
Q ss_pred cccChHHHHHHHhhhhhcCccc-cccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeec
Q 002353 503 SIYGHEDIKTALALSMFGGQEK-NVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHK 581 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k-~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~k 581 (932)
.|.|++.+|+.|.-.+...... ..-....++..-++||+||||||||++++++++.+...++.... ..+......
T Consensus 18 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~----~~~~~~~~~ 93 (285)
T 3h4m_A 18 DIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVG----SELVKKFIG 93 (285)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEG----GGGCCCSTT
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh----HHHHHhccc
Confidence 4678888777776444221000 00000011223389999999999999999999998766544211 111111000
Q ss_pred CcccchhhhccCceeccCCCeeeeccccccC-----------cchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeC
Q 002353 582 DPVTREWTLEGGALVLADRGICLIDEFDKMN-----------DQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAAN 650 (932)
Q Consensus 582 d~~~g~~~le~Gal~lAd~GIl~IDE~dkm~-----------~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaN 650 (932)
.. ................+|+||||++.+. ...+..|...++... + ...+.++.||+|||
T Consensus 94 ~~-~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~------~--~~~~~~~~vI~ttn 164 (285)
T 3h4m_A 94 EG-ASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMD------G--FDARGDVKIIGATN 164 (285)
T ss_dssp HH-HHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHH------T--TCSSSSEEEEEECS
T ss_pred hH-HHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhh------C--CCCCCCEEEEEeCC
Confidence 00 0000000001111234699999999983 334455655555321 0 01134688999999
Q ss_pred CCCCccCCCCCcccccCCChhhhc--cccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhc
Q 002353 651 PVGGRYDSSKTFSENVELTDPIIS--RFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVAD 728 (932)
Q Consensus 651 p~~Gry~~~~~~~~ni~L~~~LLs--RFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (932)
+.. .+++++++ ||+.++.+ ..|+...-..+.++.+.. ..
T Consensus 165 ~~~-------------~l~~~l~~~~Rf~~~i~~-~~p~~~~r~~il~~~~~~----~~--------------------- 205 (285)
T 3h4m_A 165 RPD-------------ILDPAILRPGRFDRIIEV-PAPDEKGRLEILKIHTRK----MN--------------------- 205 (285)
T ss_dssp CGG-------------GBCHHHHSTTSEEEEEEC-CCCCHHHHHHHHHHHHTT----SC---------------------
T ss_pred Cch-------------hcCHHHcCCCcCCeEEEE-CCCCHHHHHHHHHHHHhc----CC---------------------
Confidence 854 68899999 99998776 445444433333322211 00
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcC
Q 002353 729 REIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVT 808 (932)
Q Consensus 729 ~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt 808 (932)
.-.+.....|... ....+.|.++.+++.|...|..+.++.|+
T Consensus 206 --------------------------~~~~~~~~~l~~~------------~~g~~~~~i~~l~~~a~~~a~~~~~~~I~ 247 (285)
T 3h4m_A 206 --------------------------LAEDVNLEEIAKM------------TEGCVGAELKAICTEAGMNAIRELRDYVT 247 (285)
T ss_dssp --------------------------BCTTCCHHHHHHH------------CTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred --------------------------CCCcCCHHHHHHH------------cCCCCHHHHHHHHHHHHHHHHHhccCcCC
Confidence 0011112222222 22358899999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 002353 809 QEDVNMAIRVLLDS 822 (932)
Q Consensus 809 ~~Dv~~AI~l~~~S 822 (932)
.+|+..|+.-+..+
T Consensus 248 ~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 248 MDDFRKAVEKIMEK 261 (285)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998877554
No 25
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.48 E-value=1.7e-13 Score=168.68 Aligned_cols=231 Identities=12% Similarity=0.116 Sum_probs=137.1
Q ss_pred HHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccc
Q 002353 496 IIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGL 575 (932)
Q Consensus 496 l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gL 575 (932)
+...+...|+|++.++..+.-++...... .... -+..-++||+||||||||++|+++++.+.+. +...+.+
T Consensus 485 l~~~l~~~viGq~~a~~~l~~~i~~~~~~-~~~~--~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~------~~~~i~i 555 (758)
T 3pxi_A 485 MENILHSRVIGQDEAVVAVAKAVRRARAG-LKDP--KRPIGSFIFLGPTGVGKTELARALAESIFGD------EESMIRI 555 (758)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHTTT-CSCT--TSCSEEEEEESCTTSSHHHHHHHHHHHHHSC------TTCEEEE
T ss_pred HHHHHhCcCcChHHHHHHHHHHHHHHHcc-cCCC--CCCceEEEEECCCCCCHHHHHHHHHHHhcCC------CcceEEE
Confidence 44556678999999888777665432100 0000 0111279999999999999999999986321 0011111
Q ss_pred cceeecCcc---cchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCC
Q 002353 576 TAAVHKDPV---TREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPV 652 (932)
Q Consensus 576 ta~v~kd~~---~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~ 652 (932)
.++...+.. .|.+ .+++..+.++|+||||++++++..+..|+++|+.+.++. .+.......++.||+|||..
T Consensus 556 ~~s~~~~~~~~~~~~l---~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~--~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 556 DMSEYMEKHSTSGGQL---TEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTD--SKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp EGGGGCSSCCCC---C---HHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-------CCBCTTCEEEEEESSS
T ss_pred echhcccccccccchh---hHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEc--CCCCEeccCCeEEEEeCCCC
Confidence 111000000 0111 123334567899999999999999999999999998765 34444556789999999974
Q ss_pred CCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCC
Q 002353 653 GGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREID 732 (932)
Q Consensus 653 ~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (932)
....+.... ...-.+.++|++|||.++.+ ..++.+.-..++.+.+
T Consensus 631 ~~~~~~~~~-~~~~~f~p~l~~Rl~~~i~~-~~l~~~~~~~i~~~~l--------------------------------- 675 (758)
T 3pxi_A 631 ASEKDKVMG-ELKRAFRPEFINRIDEIIVF-HSLEKKHLTEIVSLMS--------------------------------- 675 (758)
T ss_dssp TTCCHHHHH-HHHHHSCHHHHTTSSEEEEC-C--CHHHHHHHHHHHH---------------------------------
T ss_pred hhhHHHHHH-HHHhhCCHHHHhhCCeEEec-CCCCHHHHHHHHHHHH---------------------------------
Confidence 421000000 00113789999999987776 3334333333333322
Q ss_pred CCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHH
Q 002353 733 PEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRM 794 (932)
Q Consensus 733 ~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRl 794 (932)
.++.. +.+..+...+++++.+.|.+.- -.||.++|.|+++|+-
T Consensus 676 ---------~~~~~~~~~~~~~~~~~~~a~~~l~~~~----------~~~~~~~R~L~~~i~~ 719 (758)
T 3pxi_A 676 ---------DQLTKRLKEQDLSIELTDAAKAKVAEEG----------VDLEYGARPLRRAIQK 719 (758)
T ss_dssp ---------HHHHHHHHTTTCEEEECHHHHHHHHGGG----------CCTTTTTTTHHHHHHH
T ss_pred ---------HHHHHHHHhCCCeEEECHHHHHHHHHhC----------CCCCCCChHHHHHHHH
Confidence 22211 2222345689999999887531 1799999999999974
No 26
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.47 E-value=1.7e-13 Score=151.70 Aligned_cols=162 Identities=20% Similarity=0.239 Sum_probs=94.6
Q ss_pred ccccChHHHHHHHhhhhhcCc--cccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCccccccccee
Q 002353 502 PSIYGHEDIKTALALSMFGGQ--EKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAV 579 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~--~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v 579 (932)
..|.|++.+|+.|.-++.... +..... ..+...+|||+||||||||++|+++++.+...++... ...+....
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~--~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~----~~~l~~~~ 91 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKG--NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVS----SSDLVSKW 91 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCT--TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEE----HHHHHTTT
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhc--CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEc----hHHHhhcc
Confidence 357899999988876553110 000001 1123348999999999999999999998776655421 11111100
Q ss_pred ecCcccchhhhccCcee---ccCCCeeeeccccccCcch-----------hhhHHHHHhhceeeeeccceeEeeccceEE
Q 002353 580 HKDPVTREWTLEGGALV---LADRGICLIDEFDKMNDQD-----------RVSIHEAMEQQSISISKAGIVTSLQARCSV 645 (932)
Q Consensus 580 ~kd~~~g~~~le~Gal~---lAd~GIl~IDE~dkm~~~~-----------~~~L~eamEqq~isi~kagi~~~l~ar~sI 645 (932)
... .+..+ ...+. ....+|+||||++.|.... +..++..|+.-. ....++.|
T Consensus 92 ~g~---~~~~~-~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~v 157 (322)
T 3eie_A 92 MGE---SEKLV-KQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLV 157 (322)
T ss_dssp GGG---HHHHH-HHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG----------TSCCCEEE
T ss_pred cch---HHHHH-HHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc----------ccCCceEE
Confidence 000 00000 01111 2244799999999997643 234444444211 11346789
Q ss_pred EeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHH
Q 002353 646 IAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKF 697 (932)
Q Consensus 646 IAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~ 697 (932)
|+|||... .|++++++||+..+.+ ..|+...-..+.++
T Consensus 158 i~atn~~~-------------~ld~al~~Rf~~~i~~-~~p~~~~r~~il~~ 195 (322)
T 3eie_A 158 LGATNIPW-------------QLDSAIRRRFERRIYI-PLPDLAARTTMFEI 195 (322)
T ss_dssp EEEESCGG-------------GSCHHHHHHCCEEEEC-CCCCHHHHHHHHHH
T ss_pred EEecCChh-------------hCCHHHHcccCeEEEe-CCCCHHHHHHHHHH
Confidence 99999864 6899999999988876 44555444444433
No 27
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.47 E-value=2.2e-13 Score=152.60 Aligned_cols=139 Identities=13% Similarity=0.196 Sum_probs=95.9
Q ss_pred CeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEE
Q 002353 601 GICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLC 680 (932)
Q Consensus 601 GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~ 680 (932)
||+||||++.|+...+..|+.++++....+ +....+....+|++++.. ....++++|++||..+
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~~----~ii~t~~~~~~i~~t~~~-----------~~~~l~~~l~sR~~~i- 254 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAPV----LIMATNRGITRIRGTSYQ-----------SPHGIPIDLLDRLLIV- 254 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCCE----EEEEESCSEEECBTSSCE-----------EETTCCHHHHTTEEEE-
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCCe----eeeecccceeeeeccCCC-----------CcccCCHHHHhhccEE-
Confidence 699999999999999999999998643221 011112224444444221 1126889999999874
Q ss_pred EecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChh
Q 002353 681 VVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDP 759 (932)
Q Consensus 681 ~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~e 759 (932)
.+ ..+ +.+.++.++. .++. ....++++
T Consensus 255 ~~-~~~--------------------------------------------------~~~e~~~il~~~~~~-~~~~~~~~ 282 (368)
T 3uk6_A 255 ST-TPY--------------------------------------------------SEKDTKQILRIRCEE-EDVEMSED 282 (368)
T ss_dssp EE-CCC--------------------------------------------------CHHHHHHHHHHHHHH-TTCCBCHH
T ss_pred Ee-cCC--------------------------------------------------CHHHHHHHHHHHHHH-cCCCCCHH
Confidence 43 222 2233333333 2222 24568888
Q ss_pred HHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 002353 760 DMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVL 819 (932)
Q Consensus 760 a~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~ 819 (932)
+.+.|.++ .+++++|.+..+++.|...|....+..|+.+||..|+..+
T Consensus 283 ~l~~l~~~------------~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 283 AYTVLTRI------------GLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp HHHHHHHH------------HHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred HHHHHHHH------------hcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 88888876 4458999999999999999999999999999999998764
No 28
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.46 E-value=5.7e-13 Score=151.33 Aligned_cols=193 Identities=22% Similarity=0.269 Sum_probs=118.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceecc---CCCeeeeccccccCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLA---DRGICLIDEFDKMND 613 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lA---d~GIl~IDE~dkm~~ 613 (932)
.|||+||||||||+||+++|..+...++... ++. +...... .++..+. ..+..| ...|+||||+|.+..
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~-~s~---l~sk~vG---esek~ir-~lF~~Ar~~aP~IIfiDEiDai~~ 289 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQTSATFLRIV-GSE---LIQKYLG---DGPRLCR-QIFKVAGENAPSIVFIDEIDAIGT 289 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHHHTCEEEEEE-SGG---GCCSSSS---HHHHHHH-HHHHHHHHTCSEEEEEEEESSSSC
T ss_pred CCceECCCCchHHHHHHHHHHHhCCCEEEEE-HHH---hhhccCc---hHHHHHH-HHHHHHHhcCCcEEEEehhhhhcc
Confidence 7999999999999999999999887766531 111 1111100 0010010 011111 247999999998754
Q ss_pred ch-----------hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEEE
Q 002353 614 QD-----------RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLC 680 (932)
Q Consensus 614 ~~-----------~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~ 680 (932)
.. ...+.+.|.+- .|. .-..++.||||||.+. .|+++|++ |||..+
T Consensus 290 ~R~~~~~~~~~~~~~~l~~LL~~l------Dg~--~~~~~ViVIaATNrpd-------------~LDpALlRpGRfD~~I 348 (437)
T 4b4t_I 290 KRYDSNSGGEREIQRTMLELLNQL------DGF--DDRGDVKVIMATNKIE-------------TLDPALIRPGRIDRKI 348 (437)
T ss_dssp CCSCSSCSSCCHHHHHHHHHHHHH------HHC--CCSSSEEEEEEESCST-------------TCCTTSSCTTTEEEEE
T ss_pred cCCCCCCCccHHHHHHHHHHHHHh------hCc--CCCCCEEEEEeCCChh-------------hcCHHHhcCCceeEEE
Confidence 31 22233333321 010 1134578999999977 89999998 999988
Q ss_pred EecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhH
Q 002353 681 VVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPD 760 (932)
Q Consensus 681 ~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea 760 (932)
.+ +.|+...-..| +..|....+.. .+ ++
T Consensus 349 ~v-~lPd~~~R~~I----l~~~l~~~~l~---------------------~d---vd----------------------- 376 (437)
T 4b4t_I 349 LF-ENPDLSTKKKI----LGIHTSKMNLS---------------------ED---VN----------------------- 376 (437)
T ss_dssp CC-CCCCHHHHHHH----HHHHHTTSCBC---------------------SC---CC-----------------------
T ss_pred Ec-CCcCHHHHHHH----HHHHhcCCCCC---------------------Cc---CC-----------------------
Confidence 77 66766554444 34443322210 00 11
Q ss_pred HHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhh
Q 002353 761 MEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDS 822 (932)
Q Consensus 761 ~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S 822 (932)
.+.|+.. +-..|.+.|++|++-|...|-.+.+..|+.+|+..|++-+..+
T Consensus 377 l~~LA~~------------T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 377 LETLVTT------------KDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp HHHHHHH------------CCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHh------------CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCC
Confidence 1222221 2236889999999999888888889999999999998766544
No 29
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.44 E-value=2.1e-12 Score=137.76 Aligned_cols=219 Identities=20% Similarity=0.228 Sum_probs=127.1
Q ss_pred ccccChHHHHHHHhhhh--hcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCccccccccee
Q 002353 502 PSIYGHEDIKTALALSM--FGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAV 579 (932)
Q Consensus 502 p~I~G~~~vK~aillaL--~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v 579 (932)
..|.|++.+|+.+.-.+ +........ ...+...++||+||||||||++++++++.+...++... +........+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~-~~~~~~~~~~- 87 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQK--LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS-GSDFVEMFVG- 87 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEEC-SCSSTTSCCC-
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHH--cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEe-HHHHHHHhhh-
Confidence 35788888888775332 111111000 11122337999999999999999999998765544321 1111110000
Q ss_pred ecCcccchhhhccCceecc---CCCeeeeccccccCcchhh--------------hHHHHHhhceeeeeccceeEeeccc
Q 002353 580 HKDPVTREWTLEGGALVLA---DRGICLIDEFDKMNDQDRV--------------SIHEAMEQQSISISKAGIVTSLQAR 642 (932)
Q Consensus 580 ~kd~~~g~~~le~Gal~lA---d~GIl~IDE~dkm~~~~~~--------------~L~eamEqq~isi~kagi~~~l~ar 642 (932)
. +...+ .+.+..+ ..+++||||++.+....+. .++..|+.- .-+.+
T Consensus 88 --~---~~~~~-~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~ 150 (257)
T 1lv7_A 88 --V---GASRV-RDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF-----------EGNEG 150 (257)
T ss_dssp --C---CHHHH-HHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC-----------CSSSC
T ss_pred --h---hHHHH-HHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCc-----------ccCCC
Confidence 0 00000 0111122 2369999999988764332 122222210 11456
Q ss_pred eEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccch
Q 002353 643 CSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNES 720 (932)
Q Consensus 643 ~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~ 720 (932)
+.||+|||... .+++++++ ||+..+.+ ..|+...-..+.++.+. ..
T Consensus 151 ~~vI~~tn~~~-------------~l~~~l~r~~rf~~~i~i-~~P~~~~r~~il~~~~~----~~-------------- 198 (257)
T 1lv7_A 151 IIVIAATNRPD-------------VLDPALLRPGRFDRQVVV-GLPDVRGREQILKVHMR----RV-------------- 198 (257)
T ss_dssp EEEEEEESCTT-------------TSCGGGGSTTSSCEEEEC-CCCCHHHHHHHHHHHHT----TS--------------
T ss_pred EEEEEeeCCch-------------hCCHHHcCCCcCCeEEEe-CCCCHHHHHHHHHHHHh----cC--------------
Confidence 78999999864 67888988 99987776 44554433333322211 10
Q ss_pred hhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhH-HHHHHHHHHHHHhcccCCCCccc-CHHHHHHHHHHHHHH
Q 002353 721 EEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPD-MEKLTHVYAELRRESSHGQGVPI-AVRHIESMIRMSEAH 798 (932)
Q Consensus 721 ~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea-~~~L~~~Y~~lR~~~~~~~~~pi-tvR~LEslIRlAeA~ 798 (932)
| +++++ ...+.. .|++ |+|+|+++++.|...
T Consensus 199 ---------------------------------~-l~~~~~~~~la~-------------~~~G~~~~dl~~l~~~a~~~ 231 (257)
T 1lv7_A 199 ---------------------------------P-LAPDIDAAIIAR-------------GTPGFSGADLANLVNEAALF 231 (257)
T ss_dssp ---------------------------------C-BCTTCCHHHHHH-------------TCTTCCHHHHHHHHHHHHHH
T ss_pred ---------------------------------C-CCccccHHHHHH-------------HcCCCCHHHHHHHHHHHHHH
Confidence 1 11111 122221 4666 999999999999999
Q ss_pred HHhhCCCCcCHHHHHHHHHHHH
Q 002353 799 ARMRLRQHVTQEDVNMAIRVLL 820 (932)
Q Consensus 799 Akl~lr~~Vt~~Dv~~AI~l~~ 820 (932)
|..+.+..|+.+|+..|+..+.
T Consensus 232 a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 232 AARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHhCCCcccHHHHHHHHHHHh
Confidence 9988899999999999987654
No 30
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1e-12 Score=150.65 Aligned_cols=193 Identities=18% Similarity=0.188 Sum_probs=117.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceec---cCCCeeeeccccccCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVL---ADRGICLIDEFDKMND 613 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~l---Ad~GIl~IDE~dkm~~ 613 (932)
+|||+||||||||+||+++|..+...++... ++ .+...... .++..+. ..+.. ....|+||||+|.+..
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e~~~~fi~vs-~s---~L~sk~vG---esek~ir-~lF~~Ar~~aP~IIfiDEiDai~~ 316 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANRTDATFIRVI-GS---ELVQKYVG---EGARMVR-ELFEMARTKKACIIFFDEIDAVGG 316 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHHHTCEEEEEE-GG---GGCCCSSS---HHHHHHH-HHHHHHHHTCSEEEEEECCTTTSB
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCCCeEEEE-hH---HhhcccCC---HHHHHHH-HHHHHHHhcCCceEeecccccccc
Confidence 7999999999999999999999887766531 11 11111100 0010010 01111 1347999999998854
Q ss_pred ch-----------hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEEE
Q 002353 614 QD-----------RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLC 680 (932)
Q Consensus 614 ~~-----------~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~ 680 (932)
.. +..+.+.|.+- .|. .-..++.||||||.+. .|+++|++ |||..+
T Consensus 317 ~R~~~~~~~~~~~~~~l~~lL~~l------Dg~--~~~~~ViVIaATNrpd-------------~LDpALlRpGRFD~~I 375 (467)
T 4b4t_H 317 ARFDDGAGGDNEVQRTMLELITQL------DGF--DPRGNIKVMFATNRPN-------------TLDPALLRPGRIDRKV 375 (467)
T ss_dssp CCSSSSCGGGGHHHHHHHHHHHHH------HSS--CCTTTEEEEEECSCTT-------------SBCHHHHSTTTCCEEE
T ss_pred cccCcCCCccHHHHHHHHHHHHHh------hcc--CCCCcEEEEeCCCCcc-------------cCChhhhccccccEEE
Confidence 31 11222332210 010 1134678999999976 89999998 999999
Q ss_pred EecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhH
Q 002353 681 VVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPD 760 (932)
Q Consensus 681 ~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea 760 (932)
.+ +.|+...-..|. ..|.+..+.. .-++
T Consensus 376 ~i-~lPd~~~R~~Il----k~~l~~~~l~------------------------~dvd----------------------- 403 (467)
T 4b4t_H 376 EF-SLPDLEGRANIF----RIHSKSMSVE------------------------RGIR----------------------- 403 (467)
T ss_dssp CC-CCCCHHHHHHHH----HHHHTTSCBC------------------------SSCC-----------------------
T ss_pred Ee-CCcCHHHHHHHH----HHHhcCCCCC------------------------CCCC-----------------------
Confidence 87 666665544443 3343322210 0011
Q ss_pred HHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhh
Q 002353 761 MEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDS 822 (932)
Q Consensus 761 ~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S 822 (932)
.+.|.+. .-..|.+.|++|++-|.-+|-.+.+..|+.+|+..|+.-+..+
T Consensus 404 l~~LA~~------------T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 404 WELISRL------------CPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 453 (467)
T ss_dssp HHHHHHH------------CCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHH------------CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcC
Confidence 1122221 2235889999999999888888889999999999998766543
No 31
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.43 E-value=9.6e-13 Score=150.71 Aligned_cols=187 Identities=19% Similarity=0.248 Sum_probs=115.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceecc---CCCeeeeccccccCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLA---DRGICLIDEFDKMND 613 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lA---d~GIl~IDE~dkm~~ 613 (932)
.+||+||||||||++|+++|..+...++.... + .+...... .++..+. ..+..| ...|+||||+|.+..
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~-~---~l~~~~~G---e~e~~ir-~lF~~A~~~aP~IifiDEiD~i~~ 279 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANSTKAAFIRVNG-S---EFVHKYLG---EGPRMVR-DVFRLARENAPSIIFIDEVDSIAT 279 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHHTCEEEEEEG-G---GTCCSSCS---HHHHHHH-HHHHHHHHTCSEEEEEECTHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEec-c---hhhccccc---hhHHHHH-HHHHHHHHcCCCeeechhhhhhhc
Confidence 79999999999999999999998877765311 1 11111000 0011110 011111 247999999997643
Q ss_pred ch--------------hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--ccc
Q 002353 614 QD--------------RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFD 677 (932)
Q Consensus 614 ~~--------------~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFD 677 (932)
.. ...|+..|+.- . -..++.||||||.+. .|+++|++ |||
T Consensus 280 ~R~~~~~~~~~~~~r~l~~lL~~ldg~---------~--~~~~v~vI~aTN~~~-------------~LD~AllRpGRfd 335 (428)
T 4b4t_K 280 KRFDAQTGSDREVQRILIELLTQMDGF---------D--QSTNVKVIMATNRAD-------------TLDPALLRPGRLD 335 (428)
T ss_dssp SCSSSCSCCCCHHHHHHHHHHHHHHHS---------C--SSCSEEEEEEESCSS-------------SCCHHHHSSSSEE
T ss_pred cccCCCCCCChHHHHHHHHHHHHhhCC---------C--CCCCEEEEEecCChh-------------hcChhhhcCCcce
Confidence 21 12334444321 0 123578999999876 89999998 999
Q ss_pred EEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCC
Q 002353 678 VLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLH 757 (932)
Q Consensus 678 li~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls 757 (932)
..+.+.+.|+...-..|.+..+. ..+. .+
T Consensus 336 ~~I~~p~lPd~~~R~~Il~~~~~----~~~l--------------------------------------------~~--- 364 (428)
T 4b4t_K 336 RKIEFPSLRDRRERRLIFGTIAS----KMSL--------------------------------------------AP--- 364 (428)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHH----SSCB--------------------------------------------CT---
T ss_pred EEEEcCCCCCHHHHHHHHHHHhc----CCCC--------------------------------------------Cc---
Confidence 99888666776655544433322 2111 00
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Q 002353 758 DPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRV 818 (932)
Q Consensus 758 ~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l 818 (932)
+...+.|+.. +-..|.+.|.++++-|.-.|-.+.+..|+.+|+..|+.-
T Consensus 365 ~~dl~~lA~~------------t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 365 EADLDSLIIR------------NDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp TCCHHHHHHH------------TTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccCHHHHHHH------------CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 0011222221 223588999999999988888888999999999999754
No 32
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.42 E-value=3.8e-12 Score=143.05 Aligned_cols=163 Identities=17% Similarity=0.185 Sum_probs=92.9
Q ss_pred ccccChHHHHHHHhhhhhcCccc-cccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceee
Q 002353 502 PSIYGHEDIKTALALSMFGGQEK-NVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVH 580 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k-~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~ 580 (932)
..|+|++.+|+.|.-.+...... ..-.+ ..+...+|||+||||||||++|+++++.+...++.... ..+....
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~----~~l~~~~- 157 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTG-LRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISA----SSLTSKW- 157 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCG-GGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEG----GGGCCSS-
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhh-ccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEeh----HHhhccc-
Confidence 35889999998887655321000 00000 01223389999999999999999999988665543211 1111100
Q ss_pred cCcccchhh-hccCce---eccCCCeeeeccccccCcch-----------hhhHHHHHhhceeeeeccceeEeeccceEE
Q 002353 581 KDPVTREWT-LEGGAL---VLADRGICLIDEFDKMNDQD-----------RVSIHEAMEQQSISISKAGIVTSLQARCSV 645 (932)
Q Consensus 581 kd~~~g~~~-le~Gal---~lAd~GIl~IDE~dkm~~~~-----------~~~L~eamEqq~isi~kagi~~~l~ar~sI 645 (932)
.|... .....+ .....+|+||||++.|.... +..|+..|+. .....+.++.|
T Consensus 158 ----~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~---------~~~~~~~~v~v 224 (357)
T 3d8b_A 158 ----VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDG---------ATTSSEDRILV 224 (357)
T ss_dssp ----TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-------------CCCCEEE
T ss_pred ----cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhc---------ccccCCCCEEE
Confidence 01000 000111 12346899999999985432 2334444442 11223467899
Q ss_pred EeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHH
Q 002353 646 IAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKF 697 (932)
Q Consensus 646 IAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~ 697 (932)
|+|||+.. .+++++++||+..+.+ ..|+...-..+..+
T Consensus 225 I~atn~~~-------------~l~~~l~~Rf~~~i~i-~~p~~~~r~~il~~ 262 (357)
T 3d8b_A 225 VGATNRPQ-------------EIDEAARRRLVKRLYI-PLPEASARKQIVIN 262 (357)
T ss_dssp EEEESCGG-------------GBCHHHHTTCCEEEEC-CCCCHHHHHHHHHH
T ss_pred EEecCChh-------------hCCHHHHhhCceEEEe-CCcCHHHHHHHHHH
Confidence 99999854 6889999999977776 44554444444433
No 33
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.42 E-value=2.8e-12 Score=145.69 Aligned_cols=164 Identities=19% Similarity=0.202 Sum_probs=91.8
Q ss_pred ccccChHHHHHHHhhhhhcCcc-ccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceee
Q 002353 502 PSIYGHEDIKTALALSMFGGQE-KNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVH 580 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~-k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~ 580 (932)
-.|+|++.+++.|...+..... ...-.+. ....-+|||+|+||||||++|+++++.+...++..... .+.....
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~----~l~~~~~ 189 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGL-RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAA----SLTSKYV 189 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGG-GCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSC----CC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhccc-CCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHH----Hhhcccc
Confidence 3588999999888766532100 0000000 01234999999999999999999999987766543111 1111110
Q ss_pred cCcccchhhhccCcee---ccCCCeeeeccccccCcc-----------hhhhHHHHHhhceeeeeccceeEeeccceEEE
Q 002353 581 KDPVTREWTLEGGALV---LADRGICLIDEFDKMNDQ-----------DRVSIHEAMEQQSISISKAGIVTSLQARCSVI 646 (932)
Q Consensus 581 kd~~~g~~~le~Gal~---lAd~GIl~IDE~dkm~~~-----------~~~~L~eamEqq~isi~kagi~~~l~ar~sII 646 (932)
... .. ...+.+. ....+|+|||||+.|... .+..|+..|+.. ....+.++.||
T Consensus 190 g~~-~~---~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~v~vI 256 (389)
T 3vfd_A 190 GEG-EK---LVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGV---------QSAGDDRVLVM 256 (389)
T ss_dssp --C-HH---HHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHH---------C-----CEEEE
T ss_pred chH-HH---HHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcc---------cccCCCCEEEE
Confidence 000 00 0011111 224489999999998322 233445555422 22234678999
Q ss_pred eeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHH
Q 002353 647 AAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKF 697 (932)
Q Consensus 647 AAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~ 697 (932)
+|||+.. .|++++++||+.++.+ ..++...-..+..+
T Consensus 257 ~atn~~~-------------~l~~~l~~R~~~~i~i-~~p~~~~r~~il~~ 293 (389)
T 3vfd_A 257 GATNRPQ-------------ELDEAVLRRFIKRVYV-SLPNEETRLLLLKN 293 (389)
T ss_dssp EEESCGG-------------GCCHHHHTTCCEEEEC-CCCCHHHHHHHHHH
T ss_pred EecCCch-------------hcCHHHHcCcceEEEc-CCcCHHHHHHHHHH
Confidence 9999854 7889999999977665 44555444444433
No 34
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.41 E-value=1.2e-12 Score=150.05 Aligned_cols=190 Identities=18% Similarity=0.213 Sum_probs=116.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceec---cCCCeeeeccccccCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVL---ADRGICLIDEFDKMND 613 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~l---Ad~GIl~IDE~dkm~~ 613 (932)
.|||+||||||||+||+++|..+...++... ++ .+...... .++..+. ..+.. ....|+||||+|.+..
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~~~~~~~v~-~s---~l~sk~~G---ese~~ir-~~F~~A~~~~P~IifiDEiDai~~ 288 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATIGANFIFSP-AS---GIVDKYIG---ESARIIR-EMFAYAKEHEPCIIFMDEVDAIGG 288 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCEEEEEE-GG---GTCCSSSS---HHHHHHH-HHHHHHHHSCSEEEEEECCCSSSC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEe-hh---hhccccch---HHHHHHH-HHHHHHHhcCCceeeeeccccccc
Confidence 7999999999999999999999877766521 11 11111100 0000000 01111 2347999999998753
Q ss_pred ch-----------h---hhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--ccc
Q 002353 614 QD-----------R---VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFD 677 (932)
Q Consensus 614 ~~-----------~---~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFD 677 (932)
.. . ..|+..|+... -..++.||||||.+. .|+++|++ |||
T Consensus 289 ~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----------~~~~vivI~ATNrp~-------------~LDpAllRpGRfD 344 (437)
T 4b4t_L 289 RRFSEGTSADREIQRTLMELLTQMDGFD-----------NLGQTKIIMATNRPD-------------TLDPALLRPGRLD 344 (437)
T ss_dssp CCSSSCCSSTTHHHHHHHHHHHHHHSSS-----------CTTSSEEEEEESSTT-------------SSCTTTTSTTSEE
T ss_pred ccccCCCCcchHHHHHHHHHHHHhhccc-----------CCCCeEEEEecCCch-------------hhCHHHhCCCccc
Confidence 21 1 12344443210 124568999999876 79999998 499
Q ss_pred EEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCC
Q 002353 678 VLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLH 757 (932)
Q Consensus 678 li~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls 757 (932)
..+.+ +.|+...-..|. ..|....+. .+
T Consensus 345 ~~I~i-~lPd~~~R~~Il----~~~~~~~~~-----------------------------------------------~~ 372 (437)
T 4b4t_L 345 RKVEI-PLPNEAGRLEIF----KIHTAKVKK-----------------------------------------------TG 372 (437)
T ss_dssp EEECC-CCCCHHHHHHHH----HHHHHTSCB-----------------------------------------------CS
T ss_pred eeeec-CCcCHHHHHHHH----HHHhcCCCC-----------------------------------------------Cc
Confidence 99887 666665544443 333222221 00
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhh
Q 002353 758 DPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDS 822 (932)
Q Consensus 758 ~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S 822 (932)
+...+.|.+. +-..|.+.|.++++-|.-.|-.+.+..|+.+|+..|++-+..+
T Consensus 373 d~dl~~lA~~------------t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 373 EFDFEAAVKM------------SDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp CCCHHHHHHT------------CCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHh------------CCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Confidence 0011122211 2236889999999999888888889999999999998765443
No 35
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.41 E-value=1.1e-12 Score=147.43 Aligned_cols=159 Identities=19% Similarity=0.262 Sum_probs=92.3
Q ss_pred ccccChHHHHHHHhhhhhcCc--cccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCccccccccee
Q 002353 502 PSIYGHEDIKTALALSMFGGQ--EKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAV 579 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~--~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v 579 (932)
..|.|++.+|+.|.-++.... +..... ..+..-+|||+||||||||++|+++++.+...++... ...+....
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~--~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~----~~~l~~~~ 124 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKG--NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVS----SSDLVSKW 124 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCS--SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEE----HHHHHSCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhc--CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEee----HHHHhhhh
Confidence 458899999988876553210 010011 1122338999999999999999999998866554321 11111111
Q ss_pred ecCcccchhhhccCceec---cCCCeeeeccccccCcch-----------hhhHHHHHhhceeeeeccceeEeeccceEE
Q 002353 580 HKDPVTREWTLEGGALVL---ADRGICLIDEFDKMNDQD-----------RVSIHEAMEQQSISISKAGIVTSLQARCSV 645 (932)
Q Consensus 580 ~kd~~~g~~~le~Gal~l---Ad~GIl~IDE~dkm~~~~-----------~~~L~eamEqq~isi~kagi~~~l~ar~sI 645 (932)
... ... .+ ...+.. ...+|+||||++.|.... +..|+..|+.-. ....++.|
T Consensus 125 ~g~--~~~-~~-~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~v 190 (355)
T 2qp9_X 125 MGE--SEK-LV-KQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLV 190 (355)
T ss_dssp -----CHH-HH-HHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-------------CCEEE
T ss_pred cch--HHH-HH-HHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc----------ccCCCeEE
Confidence 000 000 00 011111 256899999999997541 334444454211 12346889
Q ss_pred EeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHH
Q 002353 646 IAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEML 694 (932)
Q Consensus 646 IAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~L 694 (932)
|+|||... .|++++++||+..+.+ ..|+...-..+
T Consensus 191 I~atn~~~-------------~ld~al~rRf~~~i~i-~~P~~~~r~~i 225 (355)
T 2qp9_X 191 LGATNIPW-------------QLDSAIRRRFERRIYI-PLPDLAARTTM 225 (355)
T ss_dssp EEEESCGG-------------GSCHHHHHTCCEEEEC-CCCCHHHHHHH
T ss_pred EeecCCcc-------------cCCHHHHcccCEEEEe-CCcCHHHHHHH
Confidence 99999864 6889999999988876 44554433333
No 36
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.41 E-value=1.2e-12 Score=150.19 Aligned_cols=188 Identities=16% Similarity=0.202 Sum_probs=115.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceec---cCCCeeeeccccccCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVL---ADRGICLIDEFDKMND 613 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~l---Ad~GIl~IDE~dkm~~ 613 (932)
+|||+||||||||++|+++|..+...++... ++ .+...... .++..+. ..+.. ....|+||||+|.+..
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~~~~f~~v~-~s---~l~~~~vG---ese~~ir-~lF~~A~~~aP~IifiDEiDal~~ 288 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQTNATFLKLA-AP---QLVQMYIG---EGAKLVR-DAFALAKEKAPTIIFIDELDAIGT 288 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCEEEEEE-GG---GGCSSCSS---HHHHHHH-HHHHHHHHHCSEEEEEECTHHHHC
T ss_pred eeEEECcCCCCHHHHHHHHHHHhCCCEEEEe-hh---hhhhcccc---hHHHHHH-HHHHHHHhcCCeEEeecchhhhhh
Confidence 7999999999999999999999887766531 11 11111100 0000000 01111 1347999999998743
Q ss_pred ch-----------hh---hHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--ccc
Q 002353 614 QD-----------RV---SIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFD 677 (932)
Q Consensus 614 ~~-----------~~---~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFD 677 (932)
.. +. .|+..|+. . .-..++.||||||.+. .|+++|++ |||
T Consensus 289 ~R~~~~~~~~~~~~~~~~~lL~~ldg---------~--~~~~~ViVIaaTNrp~-------------~LD~AllRpGRfD 344 (434)
T 4b4t_M 289 KRFDSEKSGDREVQRTMLELLNQLDG---------F--SSDDRVKVLAATNRVD-------------VLDPALLRSGRLD 344 (434)
T ss_dssp CCSSGGGGTTHHHHHHHHHHHHHHTT---------S--CSSCSSEEEEECSSCC-------------CCCTTTCSTTSEE
T ss_pred ccCCCCCCCchHHHHHHHHHHHHhhc---------c--CCCCCEEEEEeCCCch-------------hcCHhHhcCCcee
Confidence 21 11 23333331 1 0124578999999977 89999999 999
Q ss_pred EEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCC
Q 002353 678 VLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLH 757 (932)
Q Consensus 678 li~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls 757 (932)
..+.+ +.|+...-..|.+. |.+..+. .+.+
T Consensus 345 ~~I~i-~lPd~~~R~~Il~~----~~~~~~~--------------------------------------------~~dv- 374 (434)
T 4b4t_M 345 RKIEF-PLPSEDSRAQILQI----HSRKMTT--------------------------------------------DDDI- 374 (434)
T ss_dssp EEEEC-CCCCHHHHHHHHHH----HHHHSCB--------------------------------------------CSCC-
T ss_pred EEEEe-CCcCHHHHHHHHHH----HhcCCCC--------------------------------------------CCcC-
Confidence 99987 66766554444433 2221111 0001
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH
Q 002353 758 DPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLL 820 (932)
Q Consensus 758 ~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~ 820 (932)
..+.|++. +-..|.+.|.++++-|.-.|--+.+..|+.+|+..|+.-+.
T Consensus 375 --dl~~lA~~------------t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~ 423 (434)
T 4b4t_M 375 --NWQELARS------------TDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQ 423 (434)
T ss_dssp --CHHHHHHH------------CSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCS
T ss_pred --CHHHHHHh------------CCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 11222221 22368899999999998888778899999999999986543
No 37
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.40 E-value=3.6e-12 Score=138.64 Aligned_cols=160 Identities=19% Similarity=0.173 Sum_probs=88.9
Q ss_pred ccccChHHHHHHHhhhhhcCcc-ccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceee
Q 002353 502 PSIYGHEDIKTALALSMFGGQE-KNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVH 580 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~-k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~ 580 (932)
..|+|++.+|+.+.-.+..... ...-.+. ....-++||+||||||||++|+++++.+...++..... .+.....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~----~l~~~~~ 95 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGL-RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAA----SLTSKYV 95 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGG-GCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEEST----TTSSSSC
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcC-CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHH----HHhhccc
Confidence 3588999999888765532110 0000000 01233899999999999999999999886655432111 1111000
Q ss_pred cCcccchhhhccCceeccCCCeeeeccccccCcch-----------hhhHHHHHhhceeeeeccceeEeeccceEEEeee
Q 002353 581 KDPVTREWTLEGGALVLADRGICLIDEFDKMNDQD-----------RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAA 649 (932)
Q Consensus 581 kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~-----------~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAa 649 (932)
.. .........+.......+|+||||++.+.... +..|+..|+.... .....++.||+||
T Consensus 96 ~~-~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~--------~~~~~~v~vi~~t 166 (297)
T 3b9p_A 96 GD-GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPG--------NPDGDRIVVLAAT 166 (297)
T ss_dssp SC-HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--------------CEEEEEEE
T ss_pred ch-HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccc--------cCCCCcEEEEeec
Confidence 00 00000000011112356899999999986542 2234444443211 0112457899999
Q ss_pred CCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChh
Q 002353 650 NPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPV 689 (932)
Q Consensus 650 Np~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~ 689 (932)
|... .+++++++||+..+.+ ..|+..
T Consensus 167 n~~~-------------~l~~~l~~R~~~~i~~-~~p~~~ 192 (297)
T 3b9p_A 167 NRPQ-------------ELDEAALRRFTKRVYV-SLPDEQ 192 (297)
T ss_dssp SCGG-------------GBCHHHHHHCCEEEEC-CCCCHH
T ss_pred CChh-------------hCCHHHHhhCCeEEEe-CCcCHH
Confidence 9754 6889999999987776 344443
No 38
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.38 E-value=9.3e-13 Score=140.12 Aligned_cols=227 Identities=16% Similarity=0.172 Sum_probs=118.6
Q ss_pred ccccChHHHHHHHhhhhh--cCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCccccccccee
Q 002353 502 PSIYGHEDIKTALALSMF--GGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAV 579 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~--gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v 579 (932)
..|+|++.+|+.+.-.+. ........ ......-++||+||||||||++|+++++.+...++.... +.......+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~--~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~-~~~~~~~~~~ 82 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQ--LGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAG-AEFVEVIGGL 82 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC--------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEET-TTTSSSSTTH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHH--cCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEech-HHHHhhccCh
Confidence 468899998887753321 11111000 112333489999999999999999999987665543211 1111110000
Q ss_pred ecCcccchhhhccCceecc---CCCeeeeccccccC------------cchhhhHHHHHhhceeeeeccceeEeeccceE
Q 002353 580 HKDPVTREWTLEGGALVLA---DRGICLIDEFDKMN------------DQDRVSIHEAMEQQSISISKAGIVTSLQARCS 644 (932)
Q Consensus 580 ~kd~~~g~~~le~Gal~lA---d~GIl~IDE~dkm~------------~~~~~~L~eamEqq~isi~kagi~~~l~ar~s 644 (932)
+...+ .+.+..+ ..+|+||||++.+. ...+..+...++.-. .. .-+.++.
T Consensus 83 ------~~~~~-~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~----~~----~~~~~~~ 147 (262)
T 2qz4_A 83 ------GAARV-RSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMD----GM----GTTDHVI 147 (262)
T ss_dssp ------HHHHH-HHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHH----TC----CTTCCEE
T ss_pred ------hHHHH-HHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhh----Cc----CCCCCEE
Confidence 00000 0111111 25799999999983 333444455544210 00 0134688
Q ss_pred EEeeeCCCCCccCCCCCcccccCCChhhhc--cccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhh
Q 002353 645 VIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEE 722 (932)
Q Consensus 645 IIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~ 722 (932)
||+|+|... .+++++++ ||+..+.+ ..|+...-..+.++.+...
T Consensus 148 vi~~tn~~~-------------~ld~~l~~~~R~~~~i~i-~~p~~~~r~~il~~~~~~~-------------------- 193 (262)
T 2qz4_A 148 VLASTNRAD-------------ILDGALMRPGRLDRHVFI-DLPTLQERREIFEQHLKSL-------------------- 193 (262)
T ss_dssp EEEEESCGG-------------GGGSGGGSTTSCCEEEEC-CSCCHHHHHHHHHHHHHHT--------------------
T ss_pred EEecCCChh-------------hcCHHHhcCCcCCeEEEe-CCcCHHHHHHHHHHHHHhC--------------------
Confidence 999999854 56788998 99988776 4555544444444333211
Q ss_pred hhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChh-HHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHh
Q 002353 723 DIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDP-DMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARM 801 (932)
Q Consensus 723 ~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~e-a~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl 801 (932)
....+.. ....|... ....+.|.|..+++.|...|..
T Consensus 194 ------------------------------~~~~~~~~~~~~l~~~------------~~g~~~~~l~~l~~~a~~~a~~ 231 (262)
T 2qz4_A 194 ------------------------------KLTQSSTFYSQRLAEL------------TPGFSGADIANICNEAALHAAR 231 (262)
T ss_dssp ------------------------------TCCBTHHHHHHHHHHT------------CTTCCHHHHHHHHHHHHTC---
T ss_pred ------------------------------CCCcchhhHHHHHHHH------------CCCCCHHHHHHHHHHHHHHHHH
Confidence 1111111 11122211 1224678999999999888888
Q ss_pred hCCCCcCHHHHHHHHHHHHhh
Q 002353 802 RLRQHVTQEDVNMAIRVLLDS 822 (932)
Q Consensus 802 ~lr~~Vt~~Dv~~AI~l~~~S 822 (932)
+.+..|+.+|+..|+.-+..+
T Consensus 232 ~~~~~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 232 EGHTSVHTLNFEYAVERVLAG 252 (262)
T ss_dssp -----CCBCCHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhccC
Confidence 888999999999998876554
No 39
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.37 E-value=1.1e-11 Score=138.10 Aligned_cols=230 Identities=20% Similarity=0.240 Sum_probs=140.7
Q ss_pred hHHHHHHhhcc----cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEE-ec
Q 002353 492 IGERIIKSIAP----SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVY-TT 566 (932)
Q Consensus 492 i~~~l~~siap----~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~-~~ 566 (932)
+|..++..+-| .++|++.++..+-+++-.+..... ..-|++|+||||+|||+|++.++......+. ++
T Consensus 11 ~~~~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~-------~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~s 83 (334)
T 1in4_A 11 VYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGE-------VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTS 83 (334)
T ss_dssp ------CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTC-------CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCC-------CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 34444444444 367888888888877654311000 0018999999999999999999998754332 22
Q ss_pred CCCcccccccceeecCcccchhhhccCce-eccCCCeeeeccccccCcchhhhHHHHHhhceeeee--cc---ceeEeec
Q 002353 567 GKGASAVGLTAAVHKDPVTREWTLEGGAL-VLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISIS--KA---GIVTSLQ 640 (932)
Q Consensus 567 g~~ss~~gLta~v~kd~~~g~~~le~Gal-~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~--ka---gi~~~l~ 640 (932)
|.... . .+... ..+ .+..+.|+||||++.+.+..+..|+.+|+...+.+. +. .......
T Consensus 84 g~~~~----------~--~~~l~---~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l 148 (334)
T 1in4_A 84 GPVLV----------K--QGDMA---AILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDI 148 (334)
T ss_dssp TTTCC----------S--HHHHH---HHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------
T ss_pred chHhc----------C--HHHHH---HHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccC
Confidence 21100 0 00000 000 123467999999999998778888888886543211 10 0111122
Q ss_pred cceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccch
Q 002353 641 ARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNES 720 (932)
Q Consensus 641 ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~ 720 (932)
.++.+++++|... .|+.++.+||.+.+.+ |.++.
T Consensus 149 ~~~~li~at~~~~-------------~Ls~~l~sR~~l~~~L-d~~~~-------------------------------- 182 (334)
T 1in4_A 149 QPFTLVGATTRSG-------------LLSSPLRSRFGIILEL-DFYTV-------------------------------- 182 (334)
T ss_dssp CCCEEEEEESCGG-------------GSCHHHHTTCSEEEEC-CCCCH--------------------------------
T ss_pred CCeEEEEecCCcc-------------cCCHHHHHhcCceeeC-CCCCH--------------------------------
Confidence 3567788888753 7899999999877665 33322
Q ss_pred hhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHH
Q 002353 721 EEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHAR 800 (932)
Q Consensus 721 ~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Ak 800 (932)
+.+..++........-.+++++...|.+. ..+++|.+.++++.+...|.
T Consensus 183 ------------------~~l~~iL~~~~~~~~~~~~~~~~~~ia~~-------------~~G~~R~a~~ll~~~~~~a~ 231 (334)
T 1in4_A 183 ------------------KELKEIIKRAASLMDVEIEDAAAEMIAKR-------------SRGTPRIAIRLTKRVRDMLT 231 (334)
T ss_dssp ------------------HHHHHHHHHHHHHTTCCBCHHHHHHHHHT-------------STTCHHHHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHcCCCcCHHHHHHHHHh-------------cCCChHHHHHHHHHHHHHHH
Confidence 22333333111112345777777666652 24689999999999999999
Q ss_pred hhCCCCcCHHHHHHHHHHHH
Q 002353 801 MRLRQHVTQEDVNMAIRVLL 820 (932)
Q Consensus 801 l~lr~~Vt~~Dv~~AI~l~~ 820 (932)
+..+..|+.++|..|+..+.
T Consensus 232 ~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 232 VVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHTCSSBCHHHHHHHHHHHT
T ss_pred HcCCCCcCHHHHHHHHHHhC
Confidence 88888999999999987753
No 40
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.37 E-value=6.3e-12 Score=139.36 Aligned_cols=163 Identities=20% Similarity=0.175 Sum_probs=89.6
Q ss_pred ccccChHHHHHHHhhhhhcCc--cccccCcccccCCceEEEeCCCCchHHHHHHHHHHhC-CCcEEecCCCcccccccce
Q 002353 502 PSIYGHEDIKTALALSMFGGQ--EKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTG-QRAVYTTGKGASAVGLTAA 578 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~--~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~-~r~v~~~g~~ss~~gLta~ 578 (932)
..|.|++.+|+.|.-++.-.. +....++ ....-+|||+||||||||++|+++++.+ ...++.. ..+ .+...
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i-~~~---~l~~~ 85 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSI-SSS---DLVSK 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTT--CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEE-ECC---SSCCS
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCC--CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEE-EhH---HHHhh
Confidence 357899988887765443110 0000000 1122389999999999999999999987 4333321 111 11111
Q ss_pred eecCcccchhhhccCceeccCCCeeeeccccccCcchh-----------hhHHHHHhhceeeeeccceeEeeccceEEEe
Q 002353 579 VHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDR-----------VSIHEAMEQQSISISKAGIVTSLQARCSVIA 647 (932)
Q Consensus 579 v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~-----------~~L~eamEqq~isi~kagi~~~l~ar~sIIA 647 (932)
..... .......-........+|+||||++.+..... ..|+..|+.- ..-+.++.||+
T Consensus 86 ~~g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~----------~~~~~~v~vI~ 154 (322)
T 1xwi_A 86 WLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGV----------GVDNDGILVLG 154 (322)
T ss_dssp SCCSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCS----------SSCCTTEEEEE
T ss_pred hhhHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcc----------cccCCCEEEEE
Confidence 00000 00000000001123457999999999854322 2223333211 01135689999
Q ss_pred eeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHH
Q 002353 648 AANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLA 695 (932)
Q Consensus 648 AaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La 695 (932)
|||... .+++++++||+..+.+ ..|+...-..+.
T Consensus 155 atn~~~-------------~ld~al~rRf~~~i~i-~~P~~~~r~~il 188 (322)
T 1xwi_A 155 ATNIPW-------------VLDSAIRRRFEKRIYI-PLPEPHARAAMF 188 (322)
T ss_dssp EESCTT-------------TSCHHHHHTCCEEEEC-CCCCHHHHHHHH
T ss_pred ecCCcc-------------cCCHHHHhhcCeEEEe-CCcCHHHHHHHH
Confidence 999864 6899999999988876 455544434333
No 41
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.37 E-value=3.3e-12 Score=130.71 Aligned_cols=203 Identities=16% Similarity=0.205 Sum_probs=124.3
Q ss_pred cccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceee
Q 002353 501 APSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVH 580 (932)
Q Consensus 501 ap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~ 580 (932)
...++|++.++..+.-.+..+. .-++||+|+||||||++++.+++.+.... .......+.++..
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~------------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~----~~~~~~~~~~~~~ 79 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN------------IPHLLFSGPPGTGKTATAIALARDLFGEN----WRDNFIEMNASDE 79 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC------------CCCEEEECSTTSSHHHHHHHHHHHHHGGG----GGGGEEEEETTCT
T ss_pred HHHHcCcHHHHHHHHHHHhCCC------------CCeEEEECCCCCCHHHHHHHHHHHHhccc----cccceEEeccccc
Confidence 3457899988888877665431 11799999999999999999988642110 0000010111000
Q ss_pred cCcc-----cchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCc
Q 002353 581 KDPV-----TREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGR 655 (932)
Q Consensus 581 kd~~-----~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gr 655 (932)
.... ...+ .....+.....++++|||++.+....+..|+..++.. +..+.+|+++|...
T Consensus 80 ~~~~~~~~~~~~~-~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~~~~~~-- 143 (226)
T 2chg_A 80 RGIDVVRHKIKEF-ARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY-------------SKSCRFILSCNYVS-- 143 (226)
T ss_dssp TCHHHHHHHHHHH-HTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGG--
T ss_pred cChHHHHHHHHHH-hcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc-------------CCCCeEEEEeCChh--
Confidence 0000 0000 0111122345689999999999998888899998853 23567888888642
Q ss_pred cCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCC
Q 002353 656 YDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEI 735 (932)
Q Consensus 656 y~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (932)
.+.+++.+||. .+.+ ..
T Consensus 144 -----------~~~~~l~~r~~-~i~~-~~-------------------------------------------------- 160 (226)
T 2chg_A 144 -----------RIIEPIQSRCA-VFRF-KP-------------------------------------------------- 160 (226)
T ss_dssp -----------GSCHHHHTTSE-EEEC-CC--------------------------------------------------
T ss_pred -----------hcCHHHHHhCc-eeec-CC--------------------------------------------------
Confidence 56789999998 3333 11
Q ss_pred CCHHHHHHHHH-HHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHH
Q 002353 736 LPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNM 814 (932)
Q Consensus 736 i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~ 814 (932)
++.+.++.++. +++. ....+++++.+.|.+. +++++|.+.++++.+...| +.|+.+||..
T Consensus 161 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~~-------------~~g~~r~l~~~l~~~~~~~-----~~I~~~~v~~ 221 (226)
T 2chg_A 161 VPKEAMKKRLLEICEK-EGVKITEDGLEALIYI-------------SGGDFRKAINALQGAAAIG-----EVVDADTIYQ 221 (226)
T ss_dssp CCHHHHHHHHHHHHHH-HTCCBCHHHHHHHHHH-------------HTTCHHHHHHHHHHHHHTC-----SCBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHHHHhcC-----ceecHHHHHH
Confidence 12233333333 2222 1234777777777653 3578999888887655443 7899999998
Q ss_pred HHH
Q 002353 815 AIR 817 (932)
Q Consensus 815 AI~ 817 (932)
|+.
T Consensus 222 ~~~ 224 (226)
T 2chg_A 222 ITA 224 (226)
T ss_dssp HHH
T ss_pred Hhc
Confidence 864
No 42
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.35 E-value=2.7e-12 Score=160.00 Aligned_cols=235 Identities=15% Similarity=0.151 Sum_probs=137.0
Q ss_pred hhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCC---cEEecCCCcc----
Q 002353 499 SIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQR---AVYTTGKGAS---- 571 (932)
Q Consensus 499 siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r---~v~~~g~~ss---- 571 (932)
.+...|+|++.++..+.-++..... ...+. -+..-++||+||||||||++|+++++.+.+ .+.....+..
T Consensus 555 ~l~~~viG~~~a~~~l~~~i~~~~~-g~~~~--~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~ 631 (854)
T 1qvr_A 555 ELHKRVVGQDEAIRAVADAIRRARA-GLKDP--NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKH 631 (854)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHHHGG-GCSCS--SSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSG
T ss_pred HHhcccCCcHHHHHHHHHHHHHHhc-ccCCC--CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchh
Confidence 3445689999888777665542210 00000 011228999999999999999999998743 2222111100
Q ss_pred -cccccceeecCcccchhhhc-cC----ceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEE
Q 002353 572 -AVGLTAAVHKDPVTREWTLE-GG----ALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSV 645 (932)
Q Consensus 572 -~~gLta~v~kd~~~g~~~le-~G----al~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sI 645 (932)
...+.++. .+....+ .| ++..+.+||+||||++++++..+..|+++|+.+.++-. .|....+ .++.|
T Consensus 632 ~~s~l~g~~-----~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~-~g~~vd~-~~~ii 704 (854)
T 1qvr_A 632 AVSRLIGAP-----PGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDS-HGRTVDF-RNTVI 704 (854)
T ss_dssp GGGGC-------------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCS-SSCCEEC-TTEEE
T ss_pred HHHHHcCCC-----CCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECC-CCCEecc-CCeEE
Confidence 01111110 0000011 12 23334678999999999999999999999999987632 2322222 35779
Q ss_pred EeeeCCCCCccCC-----C--CCccc------ccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCC
Q 002353 646 IAAANPVGGRYDS-----S--KTFSE------NVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNL 712 (932)
Q Consensus 646 IAAaNp~~Gry~~-----~--~~~~~------ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~ 712 (932)
|+|||........ . ..+.+ .-.+.++|++|||.++++.. ++.+.-..|+.+.+.
T Consensus 705 I~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~p-l~~edi~~i~~~~l~------------ 771 (854)
T 1qvr_A 705 ILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRP-LTKEQIRQIVEIQLS------------ 771 (854)
T ss_dssp EEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCC-CCHHHHHHHHHHHHH------------
T ss_pred EEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCC-CCHHHHHHHHHHHHH------------
Confidence 9999973211100 0 00111 22578999999998877633 443333444443332
Q ss_pred CCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHH
Q 002353 713 DDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESM 791 (932)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEsl 791 (932)
++.. +.+..+.+.+++++.+.|.++.. .+|+++|+|+++
T Consensus 772 ------------------------------~~~~~~~~~~~~~~~~~~a~~~L~~~~~----------~~~gn~R~L~~~ 811 (854)
T 1qvr_A 772 ------------------------------YLRARLAEKRISLELTEAAKDFLAERGY----------DPVFGARPLRRV 811 (854)
T ss_dssp ------------------------------HHHHHHHTTTCEEEECHHHHHHHHHHHC----------BTTTBTSTHHHH
T ss_pred ------------------------------HHHHHHHhCCceEEECHHHHHHHHHcCC----------CCCCChHHHHHH
Confidence 2222 23323456899999999998721 348999999999
Q ss_pred HHHHH
Q 002353 792 IRMSE 796 (932)
Q Consensus 792 IRlAe 796 (932)
|+.+.
T Consensus 812 i~~~~ 816 (854)
T 1qvr_A 812 IQREL 816 (854)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 98654
No 43
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=2.3e-11 Score=134.95 Aligned_cols=208 Identities=14% Similarity=0.177 Sum_probs=128.7
Q ss_pred cccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCC------cEE-ecCCCcccc
Q 002353 501 APSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQR------AVY-TTGKGASAV 573 (932)
Q Consensus 501 ap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r------~v~-~~g~~ss~~ 573 (932)
...++|++.++..+..++.++.. -|+||+||||||||++++++++.+.. .+. .........
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~------------~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 103 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANL------------PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI 103 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTC------------CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCC------------CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccch
Confidence 34688999999988888766521 17999999999999999999987431 111 111100000
Q ss_pred cccceeecCcccchhhhc---------cCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceE
Q 002353 574 GLTAAVHKDPVTREWTLE---------GGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCS 644 (932)
Q Consensus 574 gLta~v~kd~~~g~~~le---------~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~s 644 (932)
+ ..++. ...+... .+....+..+|++|||++.++...+..|+++|++.. ..+.
T Consensus 104 ~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~-------------~~~~ 165 (353)
T 1sxj_D 104 S----IVREK-VKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS-------------GVTR 165 (353)
T ss_dssp H----HHTTH-HHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-------------TTEE
T ss_pred H----HHHHH-HHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC-------------CCce
Confidence 0 00000 0001000 001112355799999999999999999999998642 3456
Q ss_pred EEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhh
Q 002353 645 VIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDI 724 (932)
Q Consensus 645 IIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~ 724 (932)
+|.++|... .+.+++.+||.. +.+ ..
T Consensus 166 ~il~~~~~~-------------~l~~~l~sR~~~-i~~-~~--------------------------------------- 191 (353)
T 1sxj_D 166 FCLICNYVT-------------RIIDPLASQCSK-FRF-KA--------------------------------------- 191 (353)
T ss_dssp EEEEESCGG-------------GSCHHHHHHSEE-EEC-CC---------------------------------------
T ss_pred EEEEeCchh-------------hCcchhhccCce-EEe-CC---------------------------------------
Confidence 777887643 578999999973 332 11
Q ss_pred hhhcccCCCCCCCHHHHHHHHHH-HhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhC
Q 002353 725 QVADREIDPEILPQDLLKKYITY-AKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRL 803 (932)
Q Consensus 725 ~~~~~~~~~~~i~~~~LrkyI~y-ar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~l 803 (932)
++.+.+..++.. ++. -...+++++.+.|.++ . .+++|.+.++++.+.+.+.-..
T Consensus 192 -----------~~~~~~~~~l~~~~~~-~~~~i~~~~l~~l~~~------------~-~G~~r~~~~~l~~~~~~~~~~~ 246 (353)
T 1sxj_D 192 -----------LDASNAIDRLRFISEQ-ENVKCDDGVLERILDI------------S-AGDLRRGITLLQSASKGAQYLG 246 (353)
T ss_dssp -----------CCHHHHHHHHHHHHHT-TTCCCCHHHHHHHHHH------------T-SSCHHHHHHHHHHTHHHHHHHC
T ss_pred -----------CCHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHH------------c-CCCHHHHHHHHHHHHHhcCCCc
Confidence 233334444442 221 2345788888877765 2 2679998888887766654322
Q ss_pred CC-CcCHHHHHHHHH
Q 002353 804 RQ-HVTQEDVNMAIR 817 (932)
Q Consensus 804 r~-~Vt~~Dv~~AI~ 817 (932)
.. .|+.+||..++.
T Consensus 247 ~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 247 DGKNITSTQVEELAG 261 (353)
T ss_dssp SCCCCCHHHHHHHHT
T ss_pred cCccccHHHHHHHhC
Confidence 22 799999988755
No 44
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.31 E-value=3.4e-11 Score=138.32 Aligned_cols=140 Identities=17% Similarity=0.259 Sum_probs=87.5
Q ss_pred CCCeeeeccccccCcc------------hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCccccc
Q 002353 599 DRGICLIDEFDKMNDQ------------DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENV 666 (932)
Q Consensus 599 d~GIl~IDE~dkm~~~------------~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni 666 (932)
.+|++++|||||+... .|.+|+++||..+++. +-+. .-..++.+|||+.-. ...+ .
T Consensus 250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~-~~~~--~d~~~ilfI~~gaf~-----~~~~----~ 317 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST-KHGM--VKTDHILFIASGAFQ-----VARP----S 317 (444)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEE-TTEE--EECTTCEEEEEECCS-----SCCG----G
T ss_pred cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccc-ccce--ecCCcEEEEeccccc-----cCCh----h
Confidence 6789999999999754 4669999999766554 3321 123457788886211 1111 1
Q ss_pred CCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH
Q 002353 667 ELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT 746 (932)
Q Consensus 667 ~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~ 746 (932)
.+-++|++||++++.+.+. +.+.-..|+ .. | ...++++|..
T Consensus 318 dlipel~~R~~i~i~l~~l-t~~e~~~Il----~~-----~-----------------------------~~~l~~q~~~ 358 (444)
T 1g41_A 318 DLIPELQGRLPIRVELTAL-SAADFERIL----TE-----P-----------------------------HASLTEQYKA 358 (444)
T ss_dssp GSCHHHHTTCCEEEECCCC-CHHHHHHHH----HS-----S-----------------------------TTCHHHHHHH
T ss_pred hcchHHhcccceeeeCCCC-CHHHHHHHH----HH-----H-----------------------------HHhHHHHHHH
Confidence 3558999999999988433 222222222 10 1 0125677776
Q ss_pred -HHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHH
Q 002353 747 -YAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRM 794 (932)
Q Consensus 747 -yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRl 794 (932)
++...+.-.++++|...|.+.+..+.... -.+.+|.|+++|.-
T Consensus 359 ~~~~~~~~l~~~~~al~~i~~~a~~~~~~t-----~~~GaR~L~~~ie~ 402 (444)
T 1g41_A 359 LMATEGVNIAFTTDAVKKIAEAAFRVNEKT-----ENIGARRLHTVMER 402 (444)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHHHHHHHHS-----CCCGGGHHHHHHHH
T ss_pred HhcccCceEEECHHHHHHHHHHHHHhccCC-----ccCCchHHHHHHHH
Confidence 44444566899999999999876653322 22567887777763
No 45
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.29 E-value=1.9e-11 Score=141.32 Aligned_cols=163 Identities=18% Similarity=0.165 Sum_probs=88.9
Q ss_pred ccccChHHHHHHHhhhhhcCc--cccccCcccccCCceEEEeCCCCchHHHHHHHHHHhC-CCcEEecCCCcccccccce
Q 002353 502 PSIYGHEDIKTALALSMFGGQ--EKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTG-QRAVYTTGKGASAVGLTAA 578 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~--~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~-~r~v~~~g~~ss~~gLta~ 578 (932)
..|.|++.+|..|.-++.... +....+ ..+..-+|||+||||||||+||+++++.+ ...++.. ..+. +...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~--~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v-~~~~---l~~~ 207 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTG--KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSI-SSSD---LVSK 207 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSG--GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEE-CCC--------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhc--cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEE-eHHH---HHhh
Confidence 357899999988876543110 000000 01122389999999999999999999988 4333321 1111 1111
Q ss_pred eecCcccchhhhccCceeccCCCeeeeccccccCcchh-----------hhHHHHHhhceeeeeccceeEeeccceEEEe
Q 002353 579 VHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDR-----------VSIHEAMEQQSISISKAGIVTSLQARCSVIA 647 (932)
Q Consensus 579 v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~-----------~~L~eamEqq~isi~kagi~~~l~ar~sIIA 647 (932)
...... ...............+|+||||++.+..... ..|+..|+. . ..-+.++.||+
T Consensus 208 ~~g~~~-~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~---------~-~~~~~~v~vI~ 276 (444)
T 2zan_A 208 WLGESE-KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG---------V-GVDNDGILVLG 276 (444)
T ss_dssp ----CC-CTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTC---------S-SCCCSSCEEEE
T ss_pred hcchHH-HHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhC---------c-ccCCCCEEEEe
Confidence 000000 0000000001123458999999999854321 122222221 1 11245689999
Q ss_pred eeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHH
Q 002353 648 AANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLA 695 (932)
Q Consensus 648 AaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La 695 (932)
|||+.. .+++++++||+.++.+ ..|+...-..|.
T Consensus 277 atn~~~-------------~ld~al~rRf~~~i~i-~~P~~~~r~~il 310 (444)
T 2zan_A 277 ATNIPW-------------VLDSAIRRRFEKRIYI-PLPEAHARAAMF 310 (444)
T ss_dssp EESCGG-------------GSCHHHHTTCCEEEEC-CCCCHHHHHHHH
T ss_pred cCCCcc-------------ccCHHHHhhcceEEEe-CCcCHHHHHHHH
Confidence 999864 6899999999988776 555554433333
No 46
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.24 E-value=6.4e-11 Score=137.37 Aligned_cols=144 Identities=13% Similarity=0.206 Sum_probs=95.5
Q ss_pred CeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEE
Q 002353 601 GICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLC 680 (932)
Q Consensus 601 GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~ 680 (932)
||++|||++.|+.+.+++|+.+||.....+ ....-+....+|+++| .....-.|++.++|||-.+
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~~----~il~tn~~~~~i~~~~----------~~~~~~~l~~~i~sR~~~~- 361 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAPI----VIFASNRGNCVIRGTE----------DITSPHGIPLDLLDRVMII- 361 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCCE----EEEEECCSEEECBTTS----------SCEEETTCCHHHHTTEEEE-
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCCE----EEEecCCccccccccc----------cccccccCChhHHhhccee-
Confidence 799999999999999999999999642110 0000012222333333 0111237889999999874
Q ss_pred EecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhH
Q 002353 681 VVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPD 760 (932)
Q Consensus 681 ~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea 760 (932)
.+ .. ++.+.+..|+...-..-...+++++
T Consensus 362 ~~-~~--------------------------------------------------~~~~e~~~iL~~~~~~~~~~~~~~~ 390 (456)
T 2c9o_A 362 RT-ML--------------------------------------------------YTPQEMKQIIKIRAQTEGINISEEA 390 (456)
T ss_dssp EC-CC--------------------------------------------------CCHHHHHHHHHHHHHHHTCCBCHHH
T ss_pred eC-CC--------------------------------------------------CCHHHHHHHHHHHHHHhCCCCCHHH
Confidence 43 11 2333444444421111133578888
Q ss_pred HHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhh
Q 002353 761 MEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLDS 822 (932)
Q Consensus 761 ~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~S 822 (932)
...|.++.. .+++|....+++.|.+.|.++.+..|+.+||..|+.++...
T Consensus 391 ~~~i~~~a~------------~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d~ 440 (456)
T 2c9o_A 391 LNHLGEIGT------------KTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDA 440 (456)
T ss_dssp HHHHHHHHH------------HSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCCH
T ss_pred HHHHHHHcc------------CCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcCh
Confidence 888877531 25899999999999999999999999999999999887544
No 47
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.24 E-value=7.9e-11 Score=136.87 Aligned_cols=186 Identities=23% Similarity=0.312 Sum_probs=109.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceecc---CCCeeeeccccccCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLA---DRGICLIDEFDKMND 613 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lA---d~GIl~IDE~dkm~~ 613 (932)
+|||+||||||||+|+++++..+...++... .+.......+. +.... .+.+..| ..+|+||||++.+..
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~~f~~is-~~~~~~~~~g~------~~~~~-r~lf~~A~~~~p~ILfIDEid~l~~ 122 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANVPFFHIS-GSDFVELFVGV------GAARV-RDLFAQAKAHAPCIVFIDEIDAVGR 122 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEEE-GGGTTTCCTTH------HHHHH-HHHHHHHHHTCSEEEEEETGGGTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeeeCC-HHHHHHHHhcc------cHHHH-HHHHHHHHhcCCCEEEEechhhhhh
Confidence 7999999999999999999998766655321 11111111000 00000 1122222 346999999999876
Q ss_pred ch--------------hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--ccc
Q 002353 614 QD--------------RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFD 677 (932)
Q Consensus 614 ~~--------------~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFD 677 (932)
.. +..|+..|+.- .-+.++.||+|||... .+++++++ |||
T Consensus 123 ~r~~~~~g~~~~~~~~l~~LL~~ld~~-----------~~~~~viVIaaTn~~~-------------~Ld~allR~gRFd 178 (476)
T 2ce7_A 123 HRGAGLGGGHDEREQTLNQLLVEMDGF-----------DSKEGIIVMAATNRPD-------------ILDPALLRPGRFD 178 (476)
T ss_dssp C---------CHHHHHHHHHHHHHHHS-----------CGGGTEEEEEEESCGG-------------GSCGGGGSTTSSC
T ss_pred hcccccCcCcHHHHHHHHHHHHHHhcc-----------CCCCCEEEEEecCChh-------------hhchhhcccCcce
Confidence 42 23444444420 0134688999999854 57888887 999
Q ss_pred EEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCC
Q 002353 678 VLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLH 757 (932)
Q Consensus 678 li~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls 757 (932)
..+.+ +.|+...-..| +..|....+. . +
T Consensus 179 ~~i~i-~~Pd~~~R~~I----l~~~~~~~~l--------------------------------------------~---~ 206 (476)
T 2ce7_A 179 KKIVV-DPPDMLGRKKI----LEIHTRNKPL--------------------------------------------A---E 206 (476)
T ss_dssp EEEEC-CCCCHHHHHHH----HHHHHTTSCB--------------------------------------------C---T
T ss_pred eEeec-CCCCHHHHHHH----HHHHHHhCCC--------------------------------------------c---c
Confidence 98876 55655443333 3333221110 0 0
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCccc-CHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 002353 758 DPDMEKLTHVYAELRRESSHGQGVPI-AVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVL 819 (932)
Q Consensus 758 ~ea~~~L~~~Y~~lR~~~~~~~~~pi-tvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~ 819 (932)
+.....|.. .||+ +.|+|+++++-|..+|..+.+..|+.+|+..|+.-+
T Consensus 207 ~v~l~~la~-------------~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v 256 (476)
T 2ce7_A 207 DVNLEIIAK-------------RTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRV 256 (476)
T ss_dssp TCCHHHHHH-------------TCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred hhhHHHHHH-------------hcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHH
Confidence 001122221 2343 458888888888877776777788888888887655
No 48
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.23 E-value=6.4e-11 Score=138.43 Aligned_cols=158 Identities=17% Similarity=0.156 Sum_probs=93.5
Q ss_pred cccChHHHHHHHhhhhhcCcc-ccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeec
Q 002353 503 SIYGHEDIKTALALSMFGGQE-KNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHK 581 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~-k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~k 581 (932)
.|.|++..++.|.-.+..... ...-........-+|||+||||||||++|+++++.+...++.... ..+.....
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~----~~l~~~~~- 279 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLING----PEIMSKLA- 279 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEH----HHHHTSCT-
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEc----hHhhhhhc-
Confidence 588988877776544321100 000000012233489999999999999999999988665543210 01110000
Q ss_pred CcccchhhhccCceeccCC---CeeeeccccccCc-----------chhhhHHHHHhhceeeeeccceeEeeccceEEEe
Q 002353 582 DPVTREWTLEGGALVLADR---GICLIDEFDKMND-----------QDRVSIHEAMEQQSISISKAGIVTSLQARCSVIA 647 (932)
Q Consensus 582 d~~~g~~~le~Gal~lAd~---GIl~IDE~dkm~~-----------~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIA 647 (932)
........+++..|.+ +|+|||||+.+.. ..+..|+..|+... .+.++.|||
T Consensus 280 ---g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-----------~~~~v~vIa 345 (489)
T 3hu3_A 280 ---GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMA 345 (489)
T ss_dssp ---THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC-----------TTSCEEEEE
T ss_pred ---chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc-----------cCCceEEEE
Confidence 0000111233333433 5999999988765 34567888887432 245689999
Q ss_pred eeCCCCCccCCCCCcccccCCChhhhc--cccEEEEecCCCChhHhHH
Q 002353 648 AANPVGGRYDSSKTFSENVELTDPIIS--RFDVLCVVKDVVDPVVDEM 693 (932)
Q Consensus 648 AaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~~l~D~~d~~~D~~ 693 (932)
|||+.. .|++++++ ||+..+.+ ..|+...-..
T Consensus 346 aTn~~~-------------~Ld~al~r~gRf~~~i~i-~~P~~~eR~~ 379 (489)
T 3hu3_A 346 ATNRPN-------------SIDPALRRFGRFDREVDI-GIPDATGRLE 379 (489)
T ss_dssp EESCGG-------------GBCGGGGSTTSSCEEEEC-CCCCHHHHHH
T ss_pred ecCCcc-------------ccCHHHhCCCcCceEEEe-CCCCHHHHHH
Confidence 999864 57899998 99998776 4454443333
No 49
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.23 E-value=1.8e-11 Score=134.17 Aligned_cols=164 Identities=21% Similarity=0.212 Sum_probs=92.9
Q ss_pred cccChHHHHHHHhhhhhcCccc-cccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeec
Q 002353 503 SIYGHEDIKTALALSMFGGQEK-NVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHK 581 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k-~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~k 581 (932)
.|.|++.+|+.+.-.+.-.... ..-.+..++..-++||+||||||||++|+++++.+...++... ++ .+......
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~-~~---~l~~~~~g 91 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK-GP---ELLTMWFG 91 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC-HH---HHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE-hH---HHHhhhcC
Confidence 4678777777665443211000 0000001122238999999999999999999998875544321 11 11100000
Q ss_pred CcccchhhhccCceecc---CCCeeeeccccccCcch--------------hhhHHHHHhhceeeeeccceeEeeccceE
Q 002353 582 DPVTREWTLEGGALVLA---DRGICLIDEFDKMNDQD--------------RVSIHEAMEQQSISISKAGIVTSLQARCS 644 (932)
Q Consensus 582 d~~~g~~~le~Gal~lA---d~GIl~IDE~dkm~~~~--------------~~~L~eamEqq~isi~kagi~~~l~ar~s 644 (932)
.... . ..+.+..+ ..+|+||||++.+.... +..|+..|+.-. -+.++.
T Consensus 92 ~~~~---~-~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~-----------~~~~v~ 156 (301)
T 3cf0_A 92 ESEA---N-VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNVF 156 (301)
T ss_dssp TCTT---H-HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-----------TTSSEE
T ss_pred chHH---H-HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-----------CCCCEE
Confidence 0000 0 01112222 34799999999876432 345666665210 135689
Q ss_pred EEeeeCCCCCccCCCCCcccccCCChhhhc--cccEEEEecCCCChhHhHHHHHHHH
Q 002353 645 VIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLCVVKDVVDPVVDEMLAKFVI 699 (932)
Q Consensus 645 IIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~~l~D~~d~~~D~~La~~vl 699 (932)
||+|||... .+++++++ ||+..+.+ ..|+...-..+.++.+
T Consensus 157 vi~atn~~~-------------~ld~al~r~gRf~~~i~i-~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 157 IIGATNRPD-------------IIDPAILRPGRLDQLIYI-PLPDEKSRVAILKANL 199 (301)
T ss_dssp EEEEESCGG-------------GSCGGGGSTTSSCEEEEC-CCCCHHHHHHHHHHHH
T ss_pred EEEecCCcc-------------ccChHHhcCCccceEEec-CCcCHHHHHHHHHHHH
Confidence 999999864 68899999 99988777 5566555455544444
No 50
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.23 E-value=2.9e-10 Score=123.91 Aligned_cols=200 Identities=17% Similarity=0.234 Sum_probs=121.5
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCc------EEecCCCcccccc
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRA------VYTTGKGASAVGL 575 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~------v~~~g~~ss~~gL 575 (932)
..++|++.++..+.-.+-.+. ..|+||+||||||||++++.+++.+... +...+.. ..+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------------~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~--~~~~ 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN------------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD--ERGI 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC------------CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS--TTCT
T ss_pred HHHhCCHHHHHHHHHHHhCCC------------CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc--ccCh
Confidence 357899999888776665431 1179999999999999999999874110 1111100 0000
Q ss_pred cceeecCcccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCc
Q 002353 576 TAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGR 655 (932)
Q Consensus 576 ta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gr 655 (932)
...+.. ...+. ....+..+..+|++|||++.|+...+..|+..|+.. +..+.+|+++|...
T Consensus 83 --~~~~~~-~~~~~-~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~i~~~~~~~-- 143 (319)
T 2chq_A 83 --DVVRHK-IKEFA-RTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY-------------SKSCRFILSCNYVS-- 143 (319)
T ss_dssp --TTSSHH-HHHHH-HSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSS-------------SSSEEEEEEESCGG--
T ss_pred --HHHHHH-HHHHH-hcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhc-------------CCCCeEEEEeCChh--
Confidence 000000 00010 011122245689999999999998888898888742 34678888998643
Q ss_pred cCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCC
Q 002353 656 YDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEI 735 (932)
Q Consensus 656 y~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (932)
.+.+++.+||. .+.+ ..
T Consensus 144 -----------~l~~~l~sr~~-~i~~-~~-------------------------------------------------- 160 (319)
T 2chq_A 144 -----------RIIEPIQSRCA-VFRF-KP-------------------------------------------------- 160 (319)
T ss_dssp -----------GSCHHHHTTCE-EEEC-CC--------------------------------------------------
T ss_pred -----------hcchHHHhhCe-EEEe-cC--------------------------------------------------
Confidence 67899999997 3333 11
Q ss_pred CCHHHHHHHHH-HHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHH
Q 002353 736 LPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNM 814 (932)
Q Consensus 736 i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~ 814 (932)
++.+.+..++. .+++ ....+++++.+.|.. .+++++|.+.+++..+.. ....|+.++|..
T Consensus 161 ~~~~~~~~~l~~~~~~-~~~~i~~~~l~~l~~-------------~~~G~~r~~~~~l~~~~~-----~~~~i~~~~v~~ 221 (319)
T 2chq_A 161 VPKEAMKKRLLEICEK-EGVKITEDGLEALIY-------------ISGGDFRKAINALQGAAA-----IGEVVDADTIYQ 221 (319)
T ss_dssp CCHHHHHHHHHHHHHT-TCCCBCHHHHHHHHH-------------TTTTCHHHHHHHHHHHHH-----SSSCBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHH-------------HcCCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Confidence 22333444444 2222 234577877777764 356788888777754321 145688888866
Q ss_pred HH
Q 002353 815 AI 816 (932)
Q Consensus 815 AI 816 (932)
++
T Consensus 222 ~~ 223 (319)
T 2chq_A 222 IT 223 (319)
T ss_dssp HT
T ss_pred HH
Confidence 53
No 51
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.22 E-value=9e-11 Score=128.44 Aligned_cols=134 Identities=20% Similarity=0.284 Sum_probs=86.9
Q ss_pred cccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCc-----EE-ecCCCccccc
Q 002353 501 APSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRA-----VY-TTGKGASAVG 574 (932)
Q Consensus 501 ap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~-----v~-~~g~~ss~~g 574 (932)
...++|++.++..+.-.+.++.. .|+||+||||||||++++.+++..... +. ..+. ...+
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~~------------~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~--~~~~ 89 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGSM------------PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS--DERG 89 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCC------------CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT--CHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcCCC------------CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc--ccCc
Confidence 34688999999988876665411 179999999999999999999874211 11 1100 0000
Q ss_pred ccceeecCcccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCC
Q 002353 575 LTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGG 654 (932)
Q Consensus 575 Lta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~G 654 (932)
. ...+.. ...+ ...+.+..+..++++|||++.|+...+..|+.+|+.. +..+.+|.++|...
T Consensus 90 ~--~~~~~~-~~~~-~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~i~~~~~~~- 151 (327)
T 1iqp_A 90 I--NVIREK-VKEF-ARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF-------------SSNVRFILSCNYSS- 151 (327)
T ss_dssp H--HTTHHH-HHHH-HHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGG-
T ss_pred h--HHHHHH-HHHH-HhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc-------------CCCCeEEEEeCCcc-
Confidence 0 000000 0011 1123333356789999999999999999999999863 23467888888643
Q ss_pred ccCCCCCcccccCCChhhhccccE
Q 002353 655 RYDSSKTFSENVELTDPIISRFDV 678 (932)
Q Consensus 655 ry~~~~~~~~ni~L~~~LLsRFDl 678 (932)
.+.+++.+||..
T Consensus 152 ------------~l~~~l~sr~~~ 163 (327)
T 1iqp_A 152 ------------KIIEPIQSRCAI 163 (327)
T ss_dssp ------------GSCHHHHHTEEE
T ss_pred ------------ccCHHHHhhCcE
Confidence 578899999873
No 52
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.21 E-value=2.3e-12 Score=138.18 Aligned_cols=187 Identities=22% Similarity=0.262 Sum_probs=106.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceecc---CCCeeeeccccccCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLA---DRGICLIDEFDKMND 613 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lA---d~GIl~IDE~dkm~~ 613 (932)
++||+||||||||++|+++++.+...++..... .......+..... ..+.+..+ ..+|+||||++.|..
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~-~~~~~~~~~~~~~-------~~~~~~~a~~~~~~vl~iDEid~l~~ 117 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGS-SFIEMFVGLGASR-------VRDLFETAKKQAPSIIFIDEIDAIGK 117 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSC-TTTTSCSSSCSSS-------SSTTHHHHHHSCSCEEEESCGGGTTC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEechH-HHHHhhcchHHHH-------HHHHHHHHHhcCCeEEEEeChhhhcc
Confidence 799999999999999999999876554432111 1111000000000 01122222 348999999999976
Q ss_pred ch---------------hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cc
Q 002353 614 QD---------------RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RF 676 (932)
Q Consensus 614 ~~---------------~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RF 676 (932)
.. +..|+..|+.- ...+.++.||+|+|... .+++++++ ||
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~----------~~~~~~v~vi~ttn~~~-------------~ld~~l~r~~Rf 174 (268)
T 2r62_A 118 SRAAGGVVSGNDEREQTLNQLLAEMDGF----------GSENAPVIVLAATNRPE-------------ILDPALMRPGRF 174 (268)
T ss_dssp ----------CCCSCSSTTTTTTTTTCS----------SCSCSCCEEEECBSCCT-------------TSCGGGGSSSSS
T ss_pred cccccccCCCchhHHHHHHHHHHHhhCc----------ccCCCCEEEEEecCCch-------------hcCHhHcCCCCC
Confidence 42 23344444311 01234578999999864 57888998 99
Q ss_pred cEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcC
Q 002353 677 DVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRL 756 (932)
Q Consensus 677 Dli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~L 756 (932)
+..+.+ ..|+...-..+.++.+. ..+. .+
T Consensus 175 ~~~i~i-~~p~~~~r~~il~~~~~----~~~~--------------------------------------------~~-- 203 (268)
T 2r62_A 175 DRQVLV-DKPDFNGRVEILKVHIK----GVKL--------------------------------------------AN-- 203 (268)
T ss_dssp CCCCBC-CCCCTTTHHHHHHHHTS----SSCC--------------------------------------------CS--
T ss_pred CeEEEe-cCcCHHHHHHHHHHHHh----cCCC--------------------------------------------CC--
Confidence 977665 34444333333332221 1110 00
Q ss_pred ChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Q 002353 757 HDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRV 818 (932)
Q Consensus 757 s~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l 818 (932)
+...+.|.. .+.+| +.|.|.++++.|...|....+..|+.+|+..|+.-
T Consensus 204 -~~~~~~la~----------~~~g~--~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 252 (268)
T 2r62_A 204 -DVNLQEVAK----------LTAGL--AGADLANIINEAALLAGRNNQKEVRQQHLKEAVER 252 (268)
T ss_dssp -SCCTTTTTS----------SSCSS--CHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTT
T ss_pred -ccCHHHHHH----------HcCCC--CHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHH
Confidence 000001111 11134 45999999999988887777889999999887654
No 53
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.20 E-value=7.1e-11 Score=138.03 Aligned_cols=186 Identities=23% Similarity=0.307 Sum_probs=111.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhc-cCceeccC---CCeeeeccccccC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLE-GGALVLAD---RGICLIDEFDKMN 612 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le-~Gal~lAd---~GIl~IDE~dkm~ 612 (932)
++||+||||||||+|+++++..+...++... ++..... ..+...-. ...+..+. .+++||||++.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~-g~~~~~~--------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~ 136 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARVPFITAS-GSDFVEM--------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 136 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCCEEEEE-GGGGTSS--------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEe-hhHHHHh--------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 6999999999999999999999875544321 1111110 01111000 11122222 3799999999886
Q ss_pred cchh--------------hhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cc
Q 002353 613 DQDR--------------VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RF 676 (932)
Q Consensus 613 ~~~~--------------~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RF 676 (932)
...+ ..|+..|+.+. .+..+.++|++|.+. .|++++++ ||
T Consensus 137 ~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-----------~~~~viviAatn~p~-------------~LD~aLlr~gRf 192 (499)
T 2dhr_A 137 RKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTAIVVMAATNRPD-------------ILDPALLRPGRF 192 (499)
T ss_dssp CCSSSSTTTSSHHHHHHHHHHHHHGGGCC-----------SSCCCEEEECCSCGG-------------GSCTTTSSTTSS
T ss_pred HhhccCcCCCcHHHHHHHHHHHHHhcccc-----------cCccEEEEEecCChh-------------hcCccccccccc
Confidence 4321 22333333111 134568899999853 48899998 89
Q ss_pred cEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcC
Q 002353 677 DVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRL 756 (932)
Q Consensus 677 Dli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~L 756 (932)
|..+.+ +.|+...-.. |+..|....+ +
T Consensus 193 dr~i~i-~~Pd~~~R~~----IL~~~~~~~~------------------------------------------------l 219 (499)
T 2dhr_A 193 DRQIAI-DAPDVKGREQ----ILRIHARGKP------------------------------------------------L 219 (499)
T ss_dssp CCEEEC-CCCCHHHHHH----HHHHTTSSSC------------------------------------------------C
T ss_pred ceEEec-CCCCHHHHHH----HHHHHHhcCC------------------------------------------------C
Confidence 998877 5565543332 4444432211 1
Q ss_pred Chh-HHHHHHHHHHHHHhcccCCCCcccCH-HHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh
Q 002353 757 HDP-DMEKLTHVYAELRRESSHGQGVPIAV-RHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVLLD 821 (932)
Q Consensus 757 s~e-a~~~L~~~Y~~lR~~~~~~~~~pitv-R~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~~~ 821 (932)
+++ ....|.. .|++.+ |+|+++++.|..+|..+.+..|+.+|+..|+.-+..
T Consensus 220 ~~dv~l~~lA~-------------~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~ 273 (499)
T 2dhr_A 220 AEDVDLALLAK-------------RTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVMM 273 (499)
T ss_dssp CCSSTTHHHHT-------------TSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTT
T ss_pred ChHHHHHHHHH-------------hcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhc
Confidence 111 1112221 455555 999999998888887777788999999999876643
No 54
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.20 E-value=2.6e-10 Score=125.64 Aligned_cols=142 Identities=20% Similarity=0.249 Sum_probs=90.8
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeec
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHK 581 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~k 581 (932)
..+.|++.++..+.-.+-.+.. + + .+|+.||||||||++++++++.....++... .+..+ ....+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~---~--~------~~L~~G~~G~GKT~la~~la~~l~~~~~~i~--~~~~~--~~~i~ 90 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKI---P--H------IILHSPSPGTGKTTVAKALCHDVNADMMFVN--GSDCK--IDFVR 90 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCC---C--S------EEEECSSTTSSHHHHHHHHHHHTTEEEEEEE--TTTCC--HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCC---C--e------EEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc--ccccC--HHHHH
Confidence 4578999998888777665421 1 1 5677788999999999999998755443311 11111 00000
Q ss_pred CcccchhhhccCceeccCCCeeeeccccccC-cchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCC
Q 002353 582 DPVTREWTLEGGALVLADRGICLIDEFDKMN-DQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSK 660 (932)
Q Consensus 582 d~~~g~~~le~Gal~lAd~GIl~IDE~dkm~-~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~ 660 (932)
.... .+. . ..-.....+|++|||++.|+ ...+..|+..|+.. +..+.+|+++|+..
T Consensus 91 ~~~~-~~~-~-~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~-------------~~~~~iI~~~n~~~------- 147 (324)
T 3u61_B 91 GPLT-NFA-S-AASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAY-------------SSNCSIIITANNID------- 147 (324)
T ss_dssp THHH-HHH-H-BCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHH-------------GGGCEEEEEESSGG-------
T ss_pred HHHH-HHH-h-hcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhC-------------CCCcEEEEEeCCcc-------
Confidence 0000 000 0 00112256899999999999 88899999999853 24568899999854
Q ss_pred CcccccCCChhhhccccEEEEecCCCChh
Q 002353 661 TFSENVELTDPIISRFDVLCVVKDVVDPV 689 (932)
Q Consensus 661 ~~~~ni~L~~~LLsRFDli~~l~D~~d~~ 689 (932)
.+.++|++||.. +.+ ..++..
T Consensus 148 ------~l~~~l~sR~~~-i~~-~~~~~~ 168 (324)
T 3u61_B 148 ------GIIKPLQSRCRV-ITF-GQPTDE 168 (324)
T ss_dssp ------GSCTTHHHHSEE-EEC-CCCCHH
T ss_pred ------ccCHHHHhhCcE-EEe-CCCCHH
Confidence 688999999964 443 344433
No 55
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.20 E-value=2.9e-10 Score=132.38 Aligned_cols=221 Identities=13% Similarity=0.119 Sum_probs=127.2
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEec-CCCcccccccceeec
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTT-GKGASAVGLTAAVHK 581 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~-g~~ss~~gLta~v~k 581 (932)
.|+|++.....+.-.|.... .-|+||+||||||||++++.+++.+.+..... ..+.....+.++
T Consensus 181 ~iiGr~~~i~~l~~~l~r~~------------~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--- 245 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRRT------------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--- 245 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCSS------------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------
T ss_pred CccCcHHHHHHHHHHHhccC------------CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---
Confidence 47899988888776665431 11899999999999999999999863321110 011111112111
Q ss_pred Ccccchhhhcc----CceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccC
Q 002353 582 DPVTREWTLEG----GALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYD 657 (932)
Q Consensus 582 d~~~g~~~le~----Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~ 657 (932)
....|++.... +.+..+.++|+||| ...+.+..|+.+|+.+ .+.+|+|+|+..
T Consensus 246 ~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g---------------~v~vI~at~~~e---- 302 (468)
T 3pxg_A 246 TKYRGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG---------------ELQCIGATTLDE---- 302 (468)
T ss_dssp -------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS---------------SCEEEEECCTTT----
T ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcCC---------------CEEEEecCCHHH----
Confidence 11112211110 11112357899999 3444556677777644 357899999854
Q ss_pred CCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCC
Q 002353 658 SSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILP 737 (932)
Q Consensus 658 ~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 737 (932)
+...+.++++|++||.. +.+ +.|+.+.-..+.++++..+...+. ..++
T Consensus 303 ----~~~~~~~~~al~~Rf~~-i~v-~~p~~e~~~~iL~~~~~~~~~~~~--------------------------~~i~ 350 (468)
T 3pxg_A 303 ----YRKYIEKDAALERRFQP-IQV-DQPSVDESIQILQGLRDRYEAHHR--------------------------VSIT 350 (468)
T ss_dssp ----THHHHTTCSHHHHSEEE-EEC-CCCCHHHHHHHHHHTTTTSGGGSS--------------------------CSCC
T ss_pred ----HHHHhhcCHHHHHhCcc-cee-CCCCHHHHHHHHHHHHHHHHHhcC--------------------------CCCC
Confidence 11223688999999985 333 667666555555554433221111 1367
Q ss_pred HHHHHHHHHHHhhcCCC-cCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHH
Q 002353 738 QDLLKKYITYAKLNVFP-RLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSE 796 (932)
Q Consensus 738 ~~~LrkyI~yar~~~~P-~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAe 796 (932)
.+.+...+.++..++.- .+++.+.+.+...-...+-.. ..+|.++++|+..|.-.+
T Consensus 351 ~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~---~~~p~~i~~l~~~i~~l~ 407 (468)
T 3pxg_A 351 DDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRS---FTTPPNLKELEQKLDEVR 407 (468)
T ss_dssp HHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHT---TSCCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhcc---CCCchHHHHHHHHHHHHH
Confidence 77888777787776543 577888888876554444332 368899999988776543
No 56
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.18 E-value=6e-12 Score=122.98 Aligned_cols=111 Identities=14% Similarity=0.238 Sum_probs=76.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcchh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDR 616 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~ 616 (932)
||||+|+||||||++|+++++.+++. +...+ +.++...+. ....|.+..+++|++||||++.++...|
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~------~~~~v-~~~~~~~~~-----~~~~~~~~~a~~g~l~ldei~~l~~~~q 93 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNA------QGEFV-YRELTPDNA-----PQLNDFIALAQGGTLVLSHPEHLTREQQ 93 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTT------TSCCE-EEECCTTTS-----SCHHHHHHHHTTSCEEEECGGGSCHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCcc------CCCEE-EECCCCCcc-----hhhhcHHHHcCCcEEEEcChHHCCHHHH
Confidence 99999999999999999999987552 11122 222211110 1224566778899999999999999999
Q ss_pred hhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccE
Q 002353 617 VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDV 678 (932)
Q Consensus 617 ~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDl 678 (932)
..|+.+|+.. +.++++|+|||.....+ ...-.+.+.|+.|+..
T Consensus 94 ~~Ll~~l~~~-------------~~~~~~I~~t~~~~~~~------~~~~~~~~~L~~rl~~ 136 (145)
T 3n70_A 94 YHLVQLQSQE-------------HRPFRLIGIGDTSLVEL------AASNHIIAELYYCFAM 136 (145)
T ss_dssp HHHHHHHHSS-------------SCSSCEEEEESSCHHHH------HHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhhc-------------CCCEEEEEECCcCHHHH------HHcCCCCHHHHHHhcC
Confidence 9999999422 34578999999854221 1122566777777653
No 57
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.17 E-value=5.8e-12 Score=122.90 Aligned_cols=108 Identities=16% Similarity=0.231 Sum_probs=77.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcchh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDR 616 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~ 616 (932)
||||+|+||||||++|+++++.+. .++..... .+. . .+..|.+..+++|++||||++.++...|
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~----~~~---------~--~~~~~~~~~a~~~~l~lDei~~l~~~~q 92 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGT-PWVSPARV----EYL---------I--DMPMELLQKAEGGVLYVGDIAQYSRNIQ 92 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTS-CEECCSST----THH---------H--HCHHHHHHHTTTSEEEEEECTTCCHHHH
T ss_pred cEEEECCCCccHHHHHHHHHHhCC-CeEEechh----hCC---------h--HhhhhHHHhCCCCeEEEeChHHCCHHHH
Confidence 899999999999999999998765 32221000 000 0 1134566678899999999999999999
Q ss_pred hhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEE
Q 002353 617 VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLC 680 (932)
Q Consensus 617 ~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~ 680 (932)
..|+++|+++. +.++++|+|||...... ..- +.+.|+.||..+.
T Consensus 93 ~~Ll~~l~~~~------------~~~~~iI~~tn~~~~~~-------~~~-~~~~L~~rl~~~~ 136 (143)
T 3co5_A 93 TGITFIIGKAE------------RCRVRVIASCSYAAGSD-------GIS-CEEKLAGLFSESV 136 (143)
T ss_dssp HHHHHHHHHHT------------TTTCEEEEEEEECTTTC---------C-HHHHHHHHSSSEE
T ss_pred HHHHHHHHhCC------------CCCEEEEEecCCCHHHH-------HhC-ccHHHHHHhcCcE
Confidence 99999999763 45688999999865322 111 5677888876543
No 58
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.15 E-value=8e-10 Score=114.99 Aligned_cols=180 Identities=13% Similarity=0.099 Sum_probs=110.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc----EEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA----VYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMN 612 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~----v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~ 612 (932)
++||+|+||||||++++.+++.+... .+... ..+.... .. .+ -.+...++++|||++.+.
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~-----~~~~~~~-----~~--~~----~~~~~~~vliiDe~~~~~ 117 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANELERRSFYIPL-----GIHASIS-----TA--LL----EGLEQFDLICIDDVDAVA 117 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG-----GGGGGSC-----GG--GG----TTGGGSSEEEEETGGGGT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH-----HHHHHHH-----HH--HH----HhccCCCEEEEecccccc
Confidence 89999999999999999998875421 11110 0000000 00 00 012456899999999998
Q ss_pred cch--hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhcccc--EEEEecCCCCh
Q 002353 613 DQD--RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFD--VLCVVKDVVDP 688 (932)
Q Consensus 613 ~~~--~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFD--li~~l~D~~d~ 688 (932)
... +..|+.+++... .. ....+|.++|.....+ ..+.+++.+||. .++.+ ..++.
T Consensus 118 ~~~~~~~~l~~~l~~~~----~~-------~~~~ii~~~~~~~~~~---------~~~~~~l~~r~~~~~~i~l-~~~~~ 176 (242)
T 3bos_A 118 GHPLWEEAIFDLYNRVA----EQ-------KRGSLIVSASASPMEA---------GFVLPDLVSRMHWGLTYQL-QPMMD 176 (242)
T ss_dssp TCHHHHHHHHHHHHHHH----HH-------CSCEEEEEESSCTTTT---------TCCCHHHHHHHHHSEEEEC-CCCCG
T ss_pred CCHHHHHHHHHHHHHHH----Hc-------CCCeEEEEcCCCHHHH---------HHhhhhhhhHhhcCceEEe-CCCCH
Confidence 776 777888876421 01 1224677777543221 134578999996 66655 22222
Q ss_pred hHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHHH
Q 002353 689 VVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHVY 768 (932)
Q Consensus 689 ~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~Y 768 (932)
..-. .++++++. . ....+++++.+.|.++
T Consensus 177 ~~~~----------------------------------------------~~l~~~~~---~-~~~~~~~~~~~~l~~~- 205 (242)
T 3bos_A 177 DEKL----------------------------------------------AALQRRAA---M-RGLQLPEDVGRFLLNR- 205 (242)
T ss_dssp GGHH----------------------------------------------HHHHHHHH---H-TTCCCCHHHHHHHHHH-
T ss_pred HHHH----------------------------------------------HHHHHHHH---H-cCCCCCHHHHHHHHHH-
Confidence 1111 12222222 1 1235778888777764
Q ss_pred HHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Q 002353 769 AELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIR 817 (932)
Q Consensus 769 ~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~ 817 (932)
+++++|.+.++++.+.+.|.... ..|+.+|+..|+.
T Consensus 206 ------------~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 206 ------------MARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp ------------TTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred ------------ccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 35799999999999888886554 5699999988864
No 59
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.14 E-value=2.7e-10 Score=127.39 Aligned_cols=232 Identities=17% Similarity=0.105 Sum_probs=132.5
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCC---------Cc-EEecCCC-c
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQ---------RA-VYTTGKG-A 570 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~---------r~-v~~~g~~-s 570 (932)
..++|++.....+.-.+-..... ...-+++|+||||||||++++.+++.+. .. ++..+.. .
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~--------~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 90 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRG--------EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRE 90 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSS--------CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCC
Confidence 56889988888777655321100 0112899999999999999999998762 22 2222111 1
Q ss_pred ccccccce----eec-Ccccch--hhhccCce-eccCCC---eeeeccccccCcc--hhhhHHHHHhhceeeeeccceeE
Q 002353 571 SAVGLTAA----VHK-DPVTRE--WTLEGGAL-VLADRG---ICLIDEFDKMNDQ--DRVSIHEAMEQQSISISKAGIVT 637 (932)
Q Consensus 571 s~~gLta~----v~k-d~~~g~--~~le~Gal-~lAd~G---Il~IDE~dkm~~~--~~~~L~eamEqq~isi~kagi~~ 637 (932)
+...+... +.. .+..+. ..+..... .+...| +++|||++.+... .+..|...++...- .
T Consensus 91 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~-~------- 162 (387)
T 2v1u_A 91 TPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQE-L------- 162 (387)
T ss_dssp SHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGC-C-------
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhh-c-------
Confidence 10000000 000 000000 00000000 011223 9999999999876 66677666653210 0
Q ss_pred eeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccE-EEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCC
Q 002353 638 SLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDV-LCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKS 716 (932)
Q Consensus 638 ~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDl-i~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~ 716 (932)
..+.++.+|+++|...- .-.+.+++++||.. .+.+ ..+
T Consensus 163 ~~~~~~~~I~~t~~~~~----------~~~l~~~l~~r~~~~~i~l-~~l------------------------------ 201 (387)
T 2v1u_A 163 GDRVWVSLVGITNSLGF----------VENLEPRVKSSLGEVELVF-PPY------------------------------ 201 (387)
T ss_dssp -----CEEEEECSCSTT----------SSSSCHHHHTTTTSEECCB-CCC------------------------------
T ss_pred CCCceEEEEEEECCCch----------HhhhCHHHHhcCCCeEEee-CCC------------------------------
Confidence 01456789999997521 01568899999975 3332 222
Q ss_pred ccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhh-cCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHH
Q 002353 717 KNESEEDIQVADREIDPEILPQDLLKKYIT-YAKL-NVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRM 794 (932)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~-~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRl 794 (932)
+.+.+..++. .++. .....+++++.+.|.++.. ..++++|.+..+++.
T Consensus 202 --------------------~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 202 --------------------TAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAA----------REHGDARRALDLLRV 251 (387)
T ss_dssp --------------------CHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHH----------SSSCCHHHHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH----------HhccCHHHHHHHHHH
Confidence 2223333333 1111 1134677888888877632 336899999999999
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHH
Q 002353 795 SEAHARMRLRQHVTQEDVNMAIRVLL 820 (932)
Q Consensus 795 AeA~Akl~lr~~Vt~~Dv~~AI~l~~ 820 (932)
+...|....+..|+.+|+..|+.-+.
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 99888888889999999999987654
No 60
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.13 E-value=4.7e-10 Score=115.83 Aligned_cols=208 Identities=17% Similarity=0.175 Sum_probs=122.2
Q ss_pred cccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCC----cc-----
Q 002353 501 APSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKG----AS----- 571 (932)
Q Consensus 501 ap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~----ss----- 571 (932)
...++|++.++..+...+..+.. .+ .+||+|+||||||++++.+++............ ..
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~~-----~~------~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGRI-----HH------AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 90 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTCC-----CS------EEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCCC-----Ce------EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 34578999988888777654410 11 799999999999999999988653321100000 00
Q ss_pred ---cccccceeecCcccchh----hhcc-C-ceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccc
Q 002353 572 ---AVGLTAAVHKDPVTREW----TLEG-G-ALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQAR 642 (932)
Q Consensus 572 ---~~gLta~v~kd~~~g~~----~le~-G-al~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar 642 (932)
...+. ........... .+.. . ........+++|||++.++...+..|+..++.. +..
T Consensus 91 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~-------------~~~ 156 (250)
T 1njg_A 91 QGRFVDLI-EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PEH 156 (250)
T ss_dssp TTCCSSEE-EEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC-------------CTT
T ss_pred ccCCcceE-EecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC-------------CCc
Confidence 00000 00000000000 0000 0 001223579999999999988888888888742 345
Q ss_pred eEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhh
Q 002353 643 CSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEE 722 (932)
Q Consensus 643 ~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~ 722 (932)
+.+|+++|... .+.+++++|+. .+.+ ..
T Consensus 157 ~~~i~~t~~~~-------------~~~~~l~~r~~-~i~l-~~------------------------------------- 184 (250)
T 1njg_A 157 VKFLLATTDPQ-------------KLPVTILSRCL-QFHL-KA------------------------------------- 184 (250)
T ss_dssp EEEEEEESCGG-------------GSCHHHHTTSE-EEEC-CC-------------------------------------
T ss_pred eEEEEEeCChH-------------hCCHHHHHHhh-hccC-CC-------------------------------------
Confidence 77888888633 56778888863 2222 11
Q ss_pred hhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHh
Q 002353 723 DIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARM 801 (932)
Q Consensus 723 ~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl 801 (932)
++.+.+..++. +++. ....+++++.+.|.++ .++++|.+..+++.+.+.
T Consensus 185 -------------l~~~e~~~~l~~~~~~-~~~~~~~~~~~~l~~~-------------~~G~~~~~~~~~~~~~~~--- 234 (250)
T 1njg_A 185 -------------LDVEQIRHQLEHILNE-EHIAHEPRALQLLARA-------------AEGSLRDALSLTDQAIAS--- 234 (250)
T ss_dssp -------------CCHHHHHHHHHHHHHH-TTCCBCHHHHHHHHHH-------------HTTCHHHHHHHHHHHHTT---
T ss_pred -------------CCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHHHHhc---
Confidence 23333444443 2222 2346777777766654 146899999998766433
Q ss_pred hCCCCcCHHHHHHHH
Q 002353 802 RLRQHVTQEDVNMAI 816 (932)
Q Consensus 802 ~lr~~Vt~~Dv~~AI 816 (932)
....|+.+||..|+
T Consensus 235 -~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 235 -GDGQVSTQAVSAML 248 (250)
T ss_dssp -TTSSBCHHHHHHHS
T ss_pred -cCceecHHHHHHHh
Confidence 24589999998875
No 61
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.08 E-value=2.4e-11 Score=132.90 Aligned_cols=143 Identities=12% Similarity=0.061 Sum_probs=79.5
Q ss_pred cCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCcee-------ccCCCeeee
Q 002353 533 RGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALV-------LADRGICLI 605 (932)
Q Consensus 533 RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~-------lAd~GIl~I 605 (932)
+....+||+||||||||++++++++.+...++... ...+....... +. ..+ ...+. ....+|+||
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~----~~~l~~~~~g~--~~-~~i-~~~f~~a~~~~~~~~~~vl~i 105 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMS----AGELESGNAGE--PA-KLI-RQRYREAAEIIRKGNMCCLFI 105 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEE----HHHHHCC---H--HH-HHH-HHHHHHHHHHHTTSSCCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEe----HHHhhhccCch--hH-HHH-HHHHHHHHHHHhcCCCeEEEE
Confidence 34458999999999999999999998866654321 11111110000 00 000 01121 225689999
Q ss_pred ccccccCcc-------------hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhh
Q 002353 606 DEFDKMNDQ-------------DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPI 672 (932)
Q Consensus 606 DE~dkm~~~-------------~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~L 672 (932)
||||++... .+..|++.|+..+...........-..++.||+|||... .+++++
T Consensus 106 DEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~-------------~ld~al 172 (293)
T 3t15_A 106 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS-------------TLYAPL 172 (293)
T ss_dssp ECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC-------------C--CHH
T ss_pred echhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc-------------cCCHHH
Confidence 999988652 236788888743321111111122245789999999865 688999
Q ss_pred hc--cccEEEEecCCCChhHhHHHHHHHH
Q 002353 673 IS--RFDVLCVVKDVVDPVVDEMLAKFVI 699 (932)
Q Consensus 673 Ls--RFDli~~l~D~~d~~~D~~La~~vl 699 (932)
++ |||.++.+ |+...-..|.+.++
T Consensus 173 ~R~~R~d~~i~~---P~~~~r~~Il~~~~ 198 (293)
T 3t15_A 173 IRDGRMEKFYWA---PTREDRIGVCTGIF 198 (293)
T ss_dssp HHHHHEEEEEEC---CCHHHHHHHHHHHH
T ss_pred hCCCCCceeEeC---cCHHHHHHHHHHhc
Confidence 95 99987764 56655566655443
No 62
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.06 E-value=1.1e-08 Score=114.23 Aligned_cols=208 Identities=17% Similarity=0.171 Sum_probs=121.8
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEe----cCCCc-------
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYT----TGKGA------- 570 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~----~g~~s------- 570 (932)
..++|++.++..+.-++..+. .++ .+||+|+||||||++++.+++........ ++...
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~------~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHH------AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 84 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCS------EEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHT
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCe------EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhc
Confidence 458899999888877775441 112 58999999999999999999875422110 00000
Q ss_pred ----ccccccceeecCc-ccchhhhccCce-eccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceE
Q 002353 571 ----SAVGLTAAVHKDP-VTREWTLEGGAL-VLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCS 644 (932)
Q Consensus 571 ----s~~gLta~v~kd~-~~g~~~le~Gal-~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~s 644 (932)
....+.+...... ......-..... ......|++|||++.|+...+..|+..+++. +..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~-------------~~~~~ 151 (373)
T 1jr3_A 85 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PEHVK 151 (373)
T ss_dssp SCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSC-------------CSSEE
T ss_pred cCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcC-------------CCceE
Confidence 0011110000000 000000000000 1224569999999999998889999998742 34567
Q ss_pred EEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhh
Q 002353 645 VIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDI 724 (932)
Q Consensus 645 IIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~ 724 (932)
+|.++|... .+.+++++|+. .+.+ ..
T Consensus 152 ~Il~~~~~~-------------~l~~~l~sr~~-~i~~-~~--------------------------------------- 177 (373)
T 1jr3_A 152 FLLATTDPQ-------------KLPVTILSRCL-QFHL-KA--------------------------------------- 177 (373)
T ss_dssp EEEEESCGG-------------GSCHHHHTTSE-EEEC-CC---------------------------------------
T ss_pred EEEEeCChH-------------hCcHHHHhhee-EeeC-CC---------------------------------------
Confidence 788887432 56788999983 3332 11
Q ss_pred hhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhC
Q 002353 725 QVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRL 803 (932)
Q Consensus 725 ~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~l 803 (932)
++.+.+..++. ++++ ....+++++.+.|..+ ..+++|.+.+++.-+.+.+
T Consensus 178 -----------l~~~~~~~~l~~~~~~-~~~~~~~~a~~~l~~~-------------~~G~~r~~~~~l~~~~~~~---- 228 (373)
T 1jr3_A 178 -----------LDVEQIRHQLEHILNE-EHIAHEPRALQLLARA-------------AEGSLRDALSLTDQAIASG---- 228 (373)
T ss_dssp -----------CCHHHHHHHHHHHHHH-HTCCBCHHHHHHHHHH-------------SSSCHHHHHHHHHHHHHHT----
T ss_pred -----------CCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHH-------------CCCCHHHHHHHHHHHHHhc----
Confidence 23333444443 2222 1335777777777664 2468898888886654333
Q ss_pred CCCcCHHHHHHHH
Q 002353 804 RQHVTQEDVNMAI 816 (932)
Q Consensus 804 r~~Vt~~Dv~~AI 816 (932)
...|+.+||..++
T Consensus 229 ~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 229 DGQVSTQAVSAML 241 (373)
T ss_dssp TTCBCHHHHHHHT
T ss_pred CCcccHHHHHHHh
Confidence 4679999997764
No 63
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.05 E-value=8.9e-10 Score=117.15 Aligned_cols=181 Identities=23% Similarity=0.313 Sum_probs=103.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhc-cCceecc---CCCeeeeccccccC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLE-GGALVLA---DRGICLIDEFDKMN 612 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le-~Gal~lA---d~GIl~IDE~dkm~ 612 (932)
+++|+||||||||+|+++++......++.. .+....... .+..... ...+..+ ...+++|||++.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~-~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~ 121 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARVPFITA-SGSDFVEMF--------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 121 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEE-EHHHHHHSC--------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEe-eHHHHHHHH--------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhh
Confidence 599999999999999999999876443321 000000000 0000000 0011111 23689999998774
Q ss_pred cch--------------hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cc
Q 002353 613 DQD--------------RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RF 676 (932)
Q Consensus 613 ~~~--------------~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RF 676 (932)
... ...++..|+.+. .+..+.++|++|.+. .+++++++ ||
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~ll~~l~g~~-----------~~~~~i~~a~t~~p~-------------~ld~~l~r~~rf 177 (254)
T 1ixz_A 122 RKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTAIVVMAATNRPD-------------ILDPALLRPGRF 177 (254)
T ss_dssp C---------CHHHHHHHHHHHHHHHTCC-----------TTCCEEEEEEESCGG-------------GSCGGGGSTTSS
T ss_pred cccCccccccchHHHHHHHHHHHHHhCCC-----------CCCCEEEEEccCCch-------------hCCHHHcCCCcC
Confidence 321 112333333111 122357888998754 58899998 89
Q ss_pred cEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcC
Q 002353 677 DVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRL 756 (932)
Q Consensus 677 Dli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~L 756 (932)
+..+.+ +.|+...-..+.+. +.... | +
T Consensus 178 ~~~i~i-~~p~~~~r~~il~~----~~~~~-----------------------------------------------~-~ 204 (254)
T 1ixz_A 178 DRQIAI-DAPDVKGREQILRI----HARGK-----------------------------------------------P-L 204 (254)
T ss_dssp CEEEEC-CSCCHHHHHHHHHH----HHTTS-----------------------------------------------C-B
T ss_pred CeEEee-CCcCHHHHHHHHHH----HHcCC-----------------------------------------------C-C
Confidence 998877 55555433333222 11111 1 1
Q ss_pred Chh-HHHHHHHHHHHHHhcccCCCCcc-cCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 002353 757 HDP-DMEKLTHVYAELRRESSHGQGVP-IAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAI 816 (932)
Q Consensus 757 s~e-a~~~L~~~Y~~lR~~~~~~~~~p-itvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI 816 (932)
+++ ....|.. .|+ .+.|+|+++++.|...|..+.+..|+.+|+..|+
T Consensus 205 ~~~~~~~~la~-------------~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 205 AEDVDLALLAK-------------RTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp CTTCCHHHHHH-------------TCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred CcccCHHHHHH-------------HcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 111 1222222 233 3569999999999888887778899999998874
No 64
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.05 E-value=2.5e-09 Score=119.93 Aligned_cols=224 Identities=17% Similarity=0.138 Sum_probs=126.2
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhC-----------CCc-EEecCCC
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTG-----------QRA-VYTTGKG 569 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~-----------~r~-v~~~g~~ 569 (932)
..++|++.....+.-.+...... .. .-+++|+|+||||||++++.+++.+ ... ++.....
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~--~~------~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN--EV------KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT--CC------CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC--CC------CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 56889888777666444321000 00 1189999999999999999999864 222 2211100
Q ss_pred c--ccccc----ccee--ecCcccc---hhhhccCceeccCCC-eeeeccccccCcch-hhh-HHHHHhhceeeeeccce
Q 002353 570 A--SAVGL----TAAV--HKDPVTR---EWTLEGGALVLADRG-ICLIDEFDKMNDQD-RVS-IHEAMEQQSISISKAGI 635 (932)
Q Consensus 570 s--s~~gL----ta~v--~kd~~~g---~~~le~Gal~lAd~G-Il~IDE~dkm~~~~-~~~-L~eamEqq~isi~kagi 635 (932)
. +...+ ...+ ...+..+ ...+..-.-.+...+ +++|||++.+.... +.. +...++..
T Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~--------- 162 (384)
T 2qby_B 92 VGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD--------- 162 (384)
T ss_dssp HCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS---------
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC---------
Confidence 0 00000 0000 0000000 000000000112233 99999999997653 444 44444311
Q ss_pred eEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCC
Q 002353 636 VTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDK 715 (932)
Q Consensus 636 ~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~ 715 (932)
.++.||+++|...- .-.+.+++++||...+.+ ..++
T Consensus 163 -----~~~~iI~~t~~~~~----------~~~l~~~l~sr~~~~i~l-~~l~---------------------------- 198 (384)
T 2qby_B 163 -----ANISVIMISNDINV----------RDYMEPRVLSSLGPSVIF-KPYD---------------------------- 198 (384)
T ss_dssp -----SCEEEEEECSSTTT----------TTTSCHHHHHTCCCEEEE-CCCC----------------------------
T ss_pred -----cceEEEEEECCCch----------HhhhCHHHHhcCCCeEEE-CCCC----------------------------
Confidence 56789999997531 015788999999776655 2222
Q ss_pred CccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcC-CCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHH
Q 002353 716 SKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNV-FPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIR 793 (932)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~-~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIR 793 (932)
.+.+..++. +++..+ ...+++++.+.|.++.. ..++++|.+..+++
T Consensus 199 ----------------------~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~----------~~~G~~r~a~~~l~ 246 (384)
T 2qby_B 199 ----------------------AEQLKFILSKYAEYGLIKGTYDDEILSYIAAISA----------KEHGDARKAVNLLF 246 (384)
T ss_dssp ----------------------HHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHH----------TTCCCHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHH----------hccCCHHHHHHHHH
Confidence 222222222 111111 23577777777777642 34689999999999
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHH
Q 002353 794 MSEAHARMRLRQHVTQEDVNMAIRVLL 820 (932)
Q Consensus 794 lAeA~Akl~lr~~Vt~~Dv~~AI~l~~ 820 (932)
.+...|. ....|+.+|+..|+.-+.
T Consensus 247 ~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 247 RAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 9887776 567899999999977654
No 65
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.03 E-value=4.8e-09 Score=116.59 Aligned_cols=133 Identities=17% Similarity=0.287 Sum_probs=86.0
Q ss_pred cccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCccccccccee-
Q 002353 501 APSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAV- 579 (932)
Q Consensus 501 ap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v- 579 (932)
...++|++.++..+...+-.|.. .|+||+||||||||++++.+++.+....+ .....++.++.
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~------------~~~ll~Gp~G~GKTtla~~la~~l~~~~~----~~~~~~~~~~~~ 87 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKL------------PHLLFYGPPGTGKTSTIVALAREIYGKNY----SNMVLELNASDD 87 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCC------------CCEEEECSSSSSHHHHHHHHHHHHHTTSH----HHHEEEECTTSC
T ss_pred HHHhcCcHHHHHHHHHHHhcCCC------------ceEEEECCCCCCHHHHHHHHHHHHcCCCc----cceEEEEcCccc
Confidence 34578999999988877766521 17999999999999999999987532100 00011111110
Q ss_pred -----ecCcccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCC
Q 002353 580 -----HKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGG 654 (932)
Q Consensus 580 -----~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~G 654 (932)
.++. -+.+ ...+....+...|++|||++.|+...+.+|+..||.. +..+.+|.++|...
T Consensus 88 ~~~~~ir~~-i~~~-~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~il~~n~~~- 151 (340)
T 1sxj_C 88 RGIDVVRNQ-IKDF-ASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERY-------------TKNTRFCVLANYAH- 151 (340)
T ss_dssp CSHHHHHTH-HHHH-HHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGG-
T ss_pred ccHHHHHHH-HHHH-HhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcC-------------CCCeEEEEEecCcc-
Confidence 0000 0001 0111122234679999999999999999999999863 23456778888643
Q ss_pred ccCCCCCcccccCCChhhhcccc
Q 002353 655 RYDSSKTFSENVELTDPIISRFD 677 (932)
Q Consensus 655 ry~~~~~~~~ni~L~~~LLsRFD 677 (932)
.+.+++.|||.
T Consensus 152 ------------~i~~~i~sR~~ 162 (340)
T 1sxj_C 152 ------------KLTPALLSQCT 162 (340)
T ss_dssp ------------GSCHHHHTTSE
T ss_pred ------------ccchhHHhhce
Confidence 67899999997
No 66
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.01 E-value=2.2e-10 Score=123.18 Aligned_cols=123 Identities=11% Similarity=0.191 Sum_probs=70.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeecccccc-----
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKM----- 611 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm----- 611 (932)
++||+||||||||++|+++++.....++.........|............ .+. .......+|+||||++.|
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~--~~~--~~~~~~~~vl~iDEid~l~~~~~ 141 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKK--IFD--DAYKSQLSCVVVDDIERLLDYVP 141 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHH--HHH--HHHTSSEEEEEECCHHHHTTCBT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHH--HHH--HHHhcCCcEEEEEChhhhhccCC
Confidence 89999999999999999999986555433211111111000000000000 000 011234689999999998
Q ss_pred -CcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCCh-hhhccccEEEEe
Q 002353 612 -NDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTD-PIISRFDVLCVV 682 (932)
Q Consensus 612 -~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~-~LLsRFDli~~l 682 (932)
+...+..++++|.... +.....+.++.||+|+|... .+++ .+.+||+..+.+
T Consensus 142 ~~~~~~~~~l~~L~~~~------~~~~~~~~~~~ii~ttn~~~-------------~l~~~~l~~rf~~~i~~ 195 (272)
T 1d2n_A 142 IGPRFSNLVLQALLVLL------KKAPPQGRKLLIIGTTSRKD-------------VLQEMEMLNAFSTTIHV 195 (272)
T ss_dssp TTTBCCHHHHHHHHHHT------TCCCSTTCEEEEEEEESCHH-------------HHHHTTCTTTSSEEEEC
T ss_pred CChhHHHHHHHHHHHHh------cCccCCCCCEEEEEecCChh-------------hcchhhhhcccceEEcC
Confidence 5545556666665411 00111234678999999853 2334 578899888776
No 67
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.01 E-value=2.9e-09 Score=119.35 Aligned_cols=237 Identities=14% Similarity=0.078 Sum_probs=132.2
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCc--eEEEeCCCCchHHHHHHHHHHhCCCc-----EEecCCC-cccc
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDI--NVLLLGDPGTAKSQFLKYVEKTGQRA-----VYTTGKG-ASAV 573 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~Rgdi--nvLLvGdPGTGKS~Lak~va~~~~r~-----v~~~g~~-ss~~ 573 (932)
+.++|++.....+.-.+...... +..- +++|+|+||||||++++.+++.+... ++..+.. .+..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~ 88 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFT 88 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHH
Confidence 56889888777766555432100 0111 79999999999999999999876432 2222111 1110
Q ss_pred cccce----eec-Ccccc----hhhhccCceeccCC--CeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccc
Q 002353 574 GLTAA----VHK-DPVTR----EWTLEGGALVLADR--GICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQAR 642 (932)
Q Consensus 574 gLta~----v~k-d~~~g----~~~le~Gal~lAd~--GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar 642 (932)
.+... ... .+..+ ...-....+..+.+ -|++|||++.++...+..|..++++.. .. ...+
T Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~----~~-----~~~~ 159 (389)
T 1fnn_A 89 AIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEAD----KL-----GAFR 159 (389)
T ss_dssp HHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHH----HH-----SSCC
T ss_pred HHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCC----CC-----CcCC
Confidence 11000 000 00000 00000000111123 399999999998777778888776421 00 0136
Q ss_pred eEEEeeeCCCCCccCCCCCcccccCCChhhhccccE-EEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchh
Q 002353 643 CSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDV-LCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESE 721 (932)
Q Consensus 643 ~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDl-i~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~ 721 (932)
+.||+++|... +. -.+.+++++||.. .+.+ ..
T Consensus 160 ~~iI~~~~~~~--------~~--~~l~~~~~~r~~~~~i~~-~p------------------------------------ 192 (389)
T 1fnn_A 160 IALVIVGHNDA--------VL--NNLDPSTRGIMGKYVIRF-SP------------------------------------ 192 (389)
T ss_dssp EEEEEEESSTH--------HH--HTSCHHHHHHHTTCEEEC-CC------------------------------------
T ss_pred EEEEEEECCch--------HH--HHhCHHhhhcCCCceEEe-CC------------------------------------
Confidence 78899988642 11 1467788888875 3333 11
Q ss_pred hhhhhhcccCCCCCCCHHHHHHHHH-HHhh-cCCCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHH
Q 002353 722 EDIQVADREIDPEILPQDLLKKYIT-YAKL-NVFPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHA 799 (932)
Q Consensus 722 ~~~~~~~~~~~~~~i~~~~LrkyI~-yar~-~~~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~A 799 (932)
++.+.+..++. .+.. .....+++++.+.|.++.. .. ....++++++|.+..+++.+...|
T Consensus 193 --------------l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~---~~-~~~~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 193 --------------YTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITG---AQ-TPLDTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp --------------CBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHS---BS-STTCTTSCCHHHHHHHHHHHHHHH
T ss_pred --------------CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh---hc-ccCCCCCCcHHHHHHHHHHHHHHH
Confidence 12222333332 1111 1123577777777776521 00 000112689999999999999999
Q ss_pred HhhCCCCcCHHHHHHHHHHHH
Q 002353 800 RMRLRQHVTQEDVNMAIRVLL 820 (932)
Q Consensus 800 kl~lr~~Vt~~Dv~~AI~l~~ 820 (932)
....+..|+.+|+..|+.-+.
T Consensus 255 ~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 255 QQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp HHTTCSSCCHHHHHHHHHHHS
T ss_pred HHhCCCCcCHHHHHHHHHHHh
Confidence 888889999999999877654
No 68
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.01 E-value=1.2e-09 Score=118.05 Aligned_cols=184 Identities=21% Similarity=0.298 Sum_probs=103.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccC-ceecc---CCCeeeeccccccC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGG-ALVLA---DRGICLIDEFDKMN 612 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~G-al~lA---d~GIl~IDE~dkm~ 612 (932)
+++|+||||||||+|+++++......++... +....... .+......+ .+..+ ..++++|||++.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~-~~~~~~~~--------~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~ 145 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFITAS-GSDFVEMF--------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 145 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEE-HHHHHHST--------TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEEEec-HHHHHHHH--------hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhh
Confidence 5999999999999999999998764433210 00000000 000000000 11111 23689999998764
Q ss_pred cch-----------hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEE
Q 002353 613 DQD-----------RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVL 679 (932)
Q Consensus 613 ~~~-----------~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli 679 (932)
... +..+.+.+.+ + .|. ..+..+.++|++|.+. .+++++++ ||+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~ll~~----l--sgg--~~~~~~i~~a~t~~p~-------------~ld~~l~r~~rf~~~ 204 (278)
T 1iy2_A 146 RKRGSGVGGGNDEREQTLNQLLVE----M--DGF--EKDTAIVVMAATNRPD-------------ILDPALLRPGRFDRQ 204 (278)
T ss_dssp CC--------CHHHHHHHHHHHHH----H--TTC--CTTCCEEEEEEESCTT-------------SSCHHHHSTTSSCCE
T ss_pred cccccccCCcchHHHHHHHHHHHH----H--hCC--CCCCCEEEEEecCCch-------------hCCHhHcCCCcCCeE
Confidence 321 1222232221 0 111 0123467889999764 58899998 89998
Q ss_pred EEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChh
Q 002353 680 CVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDP 759 (932)
Q Consensus 680 ~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~e 759 (932)
+.+ +.|+...-..+.++ +.... .++++
T Consensus 205 i~i-~~p~~~~r~~il~~----~~~~~------------------------------------------------~~~~~ 231 (278)
T 1iy2_A 205 IAI-DAPDVKGREQILRI----HARGK------------------------------------------------PLAED 231 (278)
T ss_dssp EEC-CCCCHHHHHHHHHH----HHTTS------------------------------------------------CBCTT
T ss_pred EEe-CCcCHHHHHHHHHH----HHccC------------------------------------------------CCCcc
Confidence 776 45554433333222 11100 11111
Q ss_pred H-HHHHHHHHHHHHhcccCCCCccc-CHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 002353 760 D-MEKLTHVYAELRRESSHGQGVPI-AVRHIESMIRMSEAHARMRLRQHVTQEDVNMAI 816 (932)
Q Consensus 760 a-~~~L~~~Y~~lR~~~~~~~~~pi-tvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI 816 (932)
+ ...|.. .|+. +.|+|+++++.|...|....+..|+.+|+.+|+
T Consensus 232 ~~~~~la~-------------~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 232 VDLALLAK-------------RTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp CCHHHHHH-------------TCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred cCHHHHHH-------------HcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 1 222221 3443 459999999999888887778899999998875
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.01 E-value=3.4e-09 Score=130.50 Aligned_cols=219 Identities=13% Similarity=0.124 Sum_probs=120.6
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEe-cCCCcccccccceee
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYT-TGKGASAVGLTAAVH 580 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~-~g~~ss~~gLta~v~ 580 (932)
..|+|++...+.++-.|.... .-|+||+||||||||++++++++.+.+.-.. ...+.....+.++.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~- 246 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT- 246 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----
T ss_pred CCccCchHHHHHHHHHHhCCC------------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccc-
Confidence 358899998888877765532 1189999999999999999999985221100 00011111111100
Q ss_pred cCcccchhhhc----cCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCcc
Q 002353 581 KDPVTREWTLE----GGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRY 656 (932)
Q Consensus 581 kd~~~g~~~le----~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry 656 (932)
...|++... .+.+..+.++|+||| ...+.+..|+.+|+.+ .+.+|+|||+..
T Consensus 247 --~~~G~~e~~l~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~l~~~---------------~v~~I~at~~~~--- 302 (758)
T 3pxi_A 247 --KYRGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG---------------ELQCIGATTLDE--- 302 (758)
T ss_dssp --------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS---------------SCEEEEECCTTT---
T ss_pred --cccchHHHHHHHHHHHHHhcCCEEEEEc----CchhHHHHHHHHHhcC---------------CEEEEeCCChHH---
Confidence 001111111 111222457899999 3444556677777644 357899999854
Q ss_pred CCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCC
Q 002353 657 DSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEIL 736 (932)
Q Consensus 657 ~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 736 (932)
+...+.++++|.+||.. +.+ +.|+...-..+.++++..+...+. ..+
T Consensus 303 -----~~~~~~~d~al~rRf~~-i~v-~~p~~~~~~~il~~~~~~~~~~~~--------------------------~~i 349 (758)
T 3pxi_A 303 -----YRKYIEKDAALERRFQP-IQV-DQPSVDESIQILQGLRDRYEAHHR--------------------------VSI 349 (758)
T ss_dssp -----THHHHTTCSHHHHSEEE-EEC-CCCCHHHHHHHHHHTTTTSGGGSS--------------------------CSC
T ss_pred -----HHHHhhccHHHHhhCcE-EEe-CCCCHHHHHHHHHHHHHHHHHhcC--------------------------CCC
Confidence 12223689999999965 443 666655555555544332211111 126
Q ss_pred CHHHHHHHHHHHhhcCCC-cCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHH
Q 002353 737 PQDLLKKYITYAKLNVFP-RLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIR 793 (932)
Q Consensus 737 ~~~~LrkyI~yar~~~~P-~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIR 793 (932)
+.+.+...+.++..++.. .++..+.+.+.......+-.. ..+|..++.++.-+.
T Consensus 350 ~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~~---~~~p~~~~~l~~~~~ 404 (758)
T 3pxi_A 350 TDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRS---FTTPPNLKELEQKLD 404 (758)
T ss_dssp CHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHT---TC--CCTHHHHHHHH
T ss_pred CHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhhc---cCCCcchhhHHHHHH
Confidence 777888877888876654 567778887776655444332 145656666665443
No 70
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.98 E-value=2e-09 Score=124.26 Aligned_cols=190 Identities=13% Similarity=0.206 Sum_probs=110.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC-----c-EEecCCCcccccccceeecCcccchhhhccCceecc-CCCeeeecccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR-----A-VYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLA-DRGICLIDEFD 609 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r-----~-v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lA-d~GIl~IDE~d 609 (932)
+++|+|+||||||+|++++++.+.. . ++.+... ....+...+... ....+. -... ...+++|||++
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~-~~~~~~~~~~~~-~~~~~~-----~~~~~~~~vL~IDEi~ 204 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK-FLNDLVDSMKEG-KLNEFR-----EKYRKKVDILLIDDVQ 204 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH-HHHHHHHHHHTT-CHHHHH-----HHHTTTCSEEEEECGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH-HHHHHHHHHHcc-cHHHHH-----HHhcCCCCEEEEeCcc
Confidence 8999999999999999999987521 1 2211100 000000000000 000000 0112 56799999999
Q ss_pred ccCc--chhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhcccc--EEEEecCC
Q 002353 610 KMND--QDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFD--VLCVVKDV 685 (932)
Q Consensus 610 km~~--~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFD--li~~l~D~ 685 (932)
.+.. ..+..|+..|+.-. .....||.+++..... -..+.++|++||. +++.+ ..
T Consensus 205 ~l~~~~~~q~~l~~~l~~l~------------~~~~~iIitt~~~~~~---------l~~l~~~L~sR~~~g~~i~l-~~ 262 (440)
T 2z4s_A 205 FLIGKTGVQTELFHTFNELH------------DSGKQIVICSDREPQK---------LSEFQDRLVSRFQMGLVAKL-EP 262 (440)
T ss_dssp GGSSCHHHHHHHHHHHHHHH------------TTTCEEEEEESSCGGG---------CSSCCHHHHHHHHSSBCCBC-CC
T ss_pred cccCChHHHHHHHHHHHHHH------------HCCCeEEEEECCCHHH---------HHHHHHHHHhhccCCeEEEe-CC
Confidence 9987 56777777776421 1123455555543211 1147899999996 44443 22
Q ss_pred CChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHH
Q 002353 686 VDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLT 765 (932)
Q Consensus 686 ~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~ 765 (932)
++.+.-. ..|++++. . ....+++++.+.|.
T Consensus 263 p~~e~r~----------------------------------------------~iL~~~~~---~-~~~~i~~e~l~~la 292 (440)
T 2z4s_A 263 PDEETRK----------------------------------------------SIARKMLE---I-EHGELPEEVLNFVA 292 (440)
T ss_dssp CCHHHHH----------------------------------------------HHHHHHHH---H-HTCCCCTTHHHHHH
T ss_pred CCHHHHH----------------------------------------------HHHHHHHH---H-cCCCCCHHHHHHHH
Confidence 2221111 12222221 1 12357788887777
Q ss_pred HHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 002353 766 HVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVL 819 (932)
Q Consensus 766 ~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~ 819 (932)
.. +++++|.|+++++.+.+.|....+ .|+.+++..|+.-+
T Consensus 293 ~~-------------~~gn~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 293 EN-------------VDDNLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDF 332 (440)
T ss_dssp HH-------------CCSCHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTT
T ss_pred Hh-------------cCCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 53 467999999999999999987755 69999998886543
No 71
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.95 E-value=1e-08 Score=111.88 Aligned_cols=133 Identities=17% Similarity=0.274 Sum_probs=83.1
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCC-----cEE-ecCCCcccccc
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQR-----AVY-TTGKGASAVGL 575 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r-----~v~-~~g~~ss~~gL 575 (932)
..++|++.++..+.-.+.++.. .|+||+||||||||++++.+++.+.. .+. ..+. ...+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~------------~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~--~~~~~ 86 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNM------------PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS--DDRGI 86 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCC------------CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT--SCCSH
T ss_pred HHHHCCHHHHHHHHHHHHcCCC------------CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc--cccCh
Confidence 4578999988887777655411 17999999999999999999887421 111 1111 10000
Q ss_pred cceeecCcccchhhhccCceeccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCc
Q 002353 576 TAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGR 655 (932)
Q Consensus 576 ta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gr 655 (932)
...++.. ..+......+......+++|||++.|+...+..|+..++.. +..+.+|.++|...
T Consensus 87 --~~i~~~~-~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~il~~~~~~-- 148 (323)
T 1sxj_B 87 --DVVRNQI-KHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELY-------------SNSTRFAFACNQSN-- 148 (323)
T ss_dssp --HHHHTHH-HHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHT-------------TTTEEEEEEESCGG--
T ss_pred --HHHHHHH-HHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhcc-------------CCCceEEEEeCChh--
Confidence 0000000 00000000111223579999999999998889999999853 24567788888633
Q ss_pred cCCCCCcccccCCChhhhcccc
Q 002353 656 YDSSKTFSENVELTDPIISRFD 677 (932)
Q Consensus 656 y~~~~~~~~ni~L~~~LLsRFD 677 (932)
.+.+++.+|+.
T Consensus 149 -----------~l~~~l~sr~~ 159 (323)
T 1sxj_B 149 -----------KIIEPLQSQCA 159 (323)
T ss_dssp -----------GSCHHHHTTSE
T ss_pred -----------hchhHHHhhce
Confidence 67889999987
No 72
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.94 E-value=3e-09 Score=143.97 Aligned_cols=153 Identities=15% Similarity=0.194 Sum_probs=93.7
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCc-EEe-cCCC-cccccccceeecCcccchhhhccCcee----ccCCCeeeeccc
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRA-VYT-TGKG-ASAVGLTAAVHKDPVTREWTLEGGALV----LADRGICLIDEF 608 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~-v~~-~g~~-ss~~gLta~v~kd~~~g~~~le~Gal~----lAd~GIl~IDE~ 608 (932)
-||||+||||||||++|+.+....+.. +.. .... ++...+...+.. .. .......|.+. ...+.|+||||+
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~-~~-~~~~~~~g~~~~P~~~gk~~VlFiDEi 1345 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHR-HT-NYVTTSKGLTLLPKSDIKNLVLFCDEI 1345 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHH-HB-CCEEETTTEEEEEBSSSSCEEEEEETT
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHH-Hh-hhccccCCccccCCCCCceEEEEeccc
Confidence 499999999999999995554443322 111 1111 111111000000 00 00000112221 123459999999
Q ss_pred cccCcc------hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCC--CCccCCCCCcccccCCChhhhccccEEE
Q 002353 609 DKMNDQ------DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPV--GGRYDSSKTFSENVELTDPIISRFDVLC 680 (932)
Q Consensus 609 dkm~~~------~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~--~Gry~~~~~~~~ni~L~~~LLsRFDli~ 680 (932)
+....+ ....|.+.||.+.+...+.+....+ .++.+|||+||+ +||+ .|+++|++||-++.
T Consensus 1346 nmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~-~~i~lIaA~Npp~~gGR~----------~l~~rllRrf~vi~ 1414 (2695)
T 4akg_A 1346 NLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTI-ERIHIVGACNPPTDPGRI----------PMSERFTRHAAILY 1414 (2695)
T ss_dssp TCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEE-ESEEEEEEECCTTSTTCC----------CCCHHHHTTEEEEE
T ss_pred ccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEe-cCEEEEEecCCCccCCCc----------cCChhhhheeeEEE
Confidence 864433 3467888899888777776666666 789999999998 5665 79999999995544
Q ss_pred EecCCCChhHhHHHHHHHHhhcc
Q 002353 681 VVKDVVDPVVDEMLAKFVIDSHF 703 (932)
Q Consensus 681 ~l~D~~d~~~D~~La~~vl~~h~ 703 (932)
+ +.|+.+.-..|...++..|.
T Consensus 1415 i--~~P~~~~l~~I~~~il~~~l 1435 (2695)
T 4akg_A 1415 L--GYPSGKSLSQIYEIYYKAIF 1435 (2695)
T ss_dssp C--CCCTTTHHHHHHHHHHHHHT
T ss_pred e--CCCCHHHHHHHHHHHHHHHh
Confidence 3 67777766777777776654
No 73
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=1.7e-08 Score=112.05 Aligned_cols=141 Identities=13% Similarity=0.143 Sum_probs=80.9
Q ss_pred cccChHHHHHHHhhhh-hcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHH-hCCCc---EEecCCCc-------
Q 002353 503 SIYGHEDIKTALALSM-FGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEK-TGQRA---VYTTGKGA------- 570 (932)
Q Consensus 503 ~I~G~~~vK~aillaL-~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~-~~~r~---v~~~g~~s------- 570 (932)
.+.|++.++..+.-++ -.+. .. |+||+||||+|||++++.+++ +.... ++..|...
T Consensus 15 ~~vg~~~~~~~l~~~~~~~~~------~~------~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~ 82 (354)
T 1sxj_E 15 ALSHNEELTNFLKSLSDQPRD------LP------HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRK 82 (354)
T ss_dssp GCCSCHHHHHHHHTTTTCTTC------CC------CEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------
T ss_pred HhcCCHHHHHHHHHHHhhCCC------CC------eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccccc
Confidence 4679999988877666 3321 11 699999999999999999999 43221 11110000
Q ss_pred ---------ccccccceeecCcc---cchhh---hccCce--------eccCCCeeeeccccccCcchhhhHHHHHhhce
Q 002353 571 ---------SAVGLTAAVHKDPV---TREWT---LEGGAL--------VLADRGICLIDEFDKMNDQDRVSIHEAMEQQS 627 (932)
Q Consensus 571 ---------s~~gLta~v~kd~~---~g~~~---le~Gal--------~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~ 627 (932)
....+.+....... ..... .....+ ...+..|++|||++.|+...+..|+..|++-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~- 161 (354)
T 1sxj_E 83 LELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY- 161 (354)
T ss_dssp ---CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHS-
T ss_pred ceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhh-
Confidence 00011110000000 00000 000000 0224459999999999999999999999852
Q ss_pred eeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEe
Q 002353 628 ISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVV 682 (932)
Q Consensus 628 isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l 682 (932)
+..+.+|.+||... .+.+++.||| ..+.+
T Consensus 162 ------------~~~~~~Il~t~~~~-------------~l~~~l~sR~-~~~~~ 190 (354)
T 1sxj_E 162 ------------SKNIRLIMVCDSMS-------------PIIAPIKSQC-LLIRC 190 (354)
T ss_dssp ------------TTTEEEEEEESCSC-------------SSCHHHHTTS-EEEEC
T ss_pred ------------cCCCEEEEEeCCHH-------------HHHHHHHhhc-eEEec
Confidence 23467788887643 5788999999 44443
No 74
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.93 E-value=5.1e-09 Score=115.40 Aligned_cols=118 Identities=16% Similarity=0.324 Sum_probs=64.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC---CcE-EecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ---RAV-YTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMN 612 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~---r~v-~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~ 612 (932)
++||+||||||||++++++++.+. ..+ +.+... ....+....... ....+. -.....+++||||++.++
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~-~~~~~~-----~~~~~~~vL~iDEi~~l~ 111 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD-FAQAMVEHLKKG-TINEFR-----NMYKSVDLLLLDDVQFLS 111 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH-HHHHHHHHHHHT-CHHHHH-----HHHHTCSEEEEECGGGGT
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH-HHHHHHHHHHcC-cHHHHH-----HHhcCCCEEEEcCccccc
Confidence 899999999999999999998762 222 211000 000000000000 000000 002346899999999998
Q ss_pred c--chhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhcccc--EEEEe
Q 002353 613 D--QDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFD--VLCVV 682 (932)
Q Consensus 613 ~--~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFD--li~~l 682 (932)
. ..+..++..++... .....+|.++|.... +-..+.++|++||. +++.+
T Consensus 112 ~~~~~~~~l~~~l~~~~------------~~~~~iii~~~~~~~---------~l~~l~~~L~sR~~~~~~i~l 164 (324)
T 1l8q_A 112 GKERTQIEFFHIFNTLY------------LLEKQIILASDRHPQ---------KLDGVSDRLVSRFEGGILVEI 164 (324)
T ss_dssp TCHHHHHHHHHHHHHHH------------HTTCEEEEEESSCGG---------GCTTSCHHHHHHHHTSEEEEC
T ss_pred CChHHHHHHHHHHHHHH------------HCCCeEEEEecCChH---------HHHHhhhHhhhcccCceEEEe
Confidence 6 45666776665321 111234444443221 11257899999997 66665
No 75
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.90 E-value=9.5e-09 Score=111.21 Aligned_cols=159 Identities=18% Similarity=0.217 Sum_probs=87.5
Q ss_pred cccChHHHHHHHhhhhh---cCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEe-cCCCcccccccce
Q 002353 503 SIYGHEDIKTALALSMF---GGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYT-TGKGASAVGLTAA 578 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~---gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~-~g~~ss~~gLta~ 578 (932)
.|.|.+.+|+.|...+. +.......-+..+. -++||+||||||||+|+++++......++. .|... ...
T Consensus 11 di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~--~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l--~~~--- 83 (274)
T 2x8a_A 11 DIGALEDIREELTMAILAPVRNPDQFKALGLVTP--AGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPEL--LNM--- 83 (274)
T ss_dssp -CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCC--SEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTT--CSS---
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCC--CeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHH--Hhh---
Confidence 46788888877654332 22111001111121 159999999999999999999987654332 22111 000
Q ss_pred eecCcccchhhhccCcee-c---cCCCeeeeccccccCcch-----------hhhHHHHHhhceeeeeccceeEeeccce
Q 002353 579 VHKDPVTREWTLEGGALV-L---ADRGICLIDEFDKMNDQD-----------RVSIHEAMEQQSISISKAGIVTSLQARC 643 (932)
Q Consensus 579 v~kd~~~g~~~le~Gal~-l---Ad~GIl~IDE~dkm~~~~-----------~~~L~eamEqq~isi~kagi~~~l~ar~ 643 (932)
..++..-.-+.+. . ....++++||++.+.... ...++..|..+. .+..+
T Consensus 84 -----~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~-----------~~~~~ 147 (274)
T 2x8a_A 84 -----YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLE-----------ARQQV 147 (274)
T ss_dssp -----TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCC-----------STTCE
T ss_pred -----hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccc-----------ccCCE
Confidence 0011000001111 1 123689999999864321 112222232111 12346
Q ss_pred EEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEEEEecCCCChhHhHHHHHHH
Q 002353 644 SVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLCVVKDVVDPVVDEMLAKFV 698 (932)
Q Consensus 644 sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~~l~D~~d~~~D~~La~~v 698 (932)
.++|++|.+. .|++++++ |||..+.+ +.|+...-..|.+.+
T Consensus 148 i~ia~tn~p~-------------~LD~al~r~gRfd~~i~~-~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 148 FIMAATNRPD-------------IIDPAILRPGRLDKTLFV-GLPPPADRLAILKTI 190 (274)
T ss_dssp EEEEEESCGG-------------GSCHHHHSTTSSCEEEEC-CSCCHHHHHHHHHHH
T ss_pred EEEeecCChh-------------hCCHhhcCcccCCeEEEe-CCcCHHHHHHHHHHH
Confidence 7889999865 68999998 99999987 777776655555443
No 76
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.88 E-value=1.7e-08 Score=124.16 Aligned_cols=151 Identities=16% Similarity=0.166 Sum_probs=82.8
Q ss_pred cccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCC----------cEEecCCCccc
Q 002353 503 SIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQR----------AVYTTGKGASA 572 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r----------~v~~~g~~ss~ 572 (932)
.++|++...+.+.-.|.... .-|+||+|+||||||++++.+++.+.. .++... .
T Consensus 187 ~~iGr~~~i~~l~~~l~~~~------------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~----~ 250 (758)
T 1r6b_X 187 PLIGREKELERAIQVLCRRR------------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD----I 250 (758)
T ss_dssp CCCSCHHHHHHHHHHHTSSS------------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC----C
T ss_pred CccCCHHHHHHHHHHHhccC------------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc----H
Confidence 47788877777666554431 128999999999999999999986521 111110 0
Q ss_pred ccccceeecCcccchhh--hc--cCceeccCCCeeeeccccccCcc------h---hhhHHHHHhhceeeeeccceeEee
Q 002353 573 VGLTAAVHKDPVTREWT--LE--GGALVLADRGICLIDEFDKMNDQ------D---RVSIHEAMEQQSISISKAGIVTSL 639 (932)
Q Consensus 573 ~gLta~v~kd~~~g~~~--le--~Gal~lAd~GIl~IDE~dkm~~~------~---~~~L~eamEqq~isi~kagi~~~l 639 (932)
..+.++. ...|.+. +. -..+..+.++|+||||++.+... . ...|..+++.
T Consensus 251 ~~l~~~~---~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-------------- 313 (758)
T 1r6b_X 251 GSLLAGT---KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-------------- 313 (758)
T ss_dssp C---CCC---CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--------------
T ss_pred HHHhccc---cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--------------
Confidence 0111110 1111111 10 01112235689999999998321 1 1222223222
Q ss_pred ccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHH
Q 002353 640 QARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKF 697 (932)
Q Consensus 640 ~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~ 697 (932)
..+.+|+|+|+.. +...+.++++|.+||+. +.+ +.|+...-..+...
T Consensus 314 -~~~~~I~at~~~~--------~~~~~~~d~aL~~Rf~~-i~v-~~p~~~e~~~il~~ 360 (758)
T 1r6b_X 314 -GKIRVIGSTTYQE--------FSNIFEKDRALARRFQK-IDI-TEPSIEETVQIING 360 (758)
T ss_dssp -CCCEEEEEECHHH--------HHCCCCCTTSSGGGEEE-EEC-CCCCHHHHHHHHHH
T ss_pred -CCeEEEEEeCchH--------HhhhhhcCHHHHhCceE-EEc-CCCCHHHHHHHHHH
Confidence 2467899998742 11223678899999994 333 55655444444433
No 77
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.85 E-value=3.8e-09 Score=129.32 Aligned_cols=135 Identities=22% Similarity=0.292 Sum_probs=82.6
Q ss_pred CceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceecc---CCCeeeecccccc
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLA---DRGICLIDEFDKM 611 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lA---d~GIl~IDE~dkm 611 (932)
.-+|||+||||||||+||+++++.+...++... ++ .+...... ..+..+. ..+..| ..+|+||||||.+
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~-~~---~l~sk~~g---ese~~lr-~lF~~A~~~~PsIIfIDEiDal 309 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLIN-GP---EIMSKLAG---ESESNLR-KAFEEAEKNAPAIIFIDELDAI 309 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEE-HH---HHHSSCTT---HHHHHHH-HHHHHHTTSCSEEEEEESGGGT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEE-hH---Hhhcccch---HHHHHHH-HHHHHHHHcCCeEEEEehhccc
Confidence 348999999999999999999998877665421 11 11111000 0011110 111222 3479999999998
Q ss_pred Ccch-----------hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--cccE
Q 002353 612 NDQD-----------RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDV 678 (932)
Q Consensus 612 ~~~~-----------~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDl 678 (932)
.+.. .+.|+..|+.-. -..++.||||||... .|+++|++ |||.
T Consensus 310 ~~~r~~~~~~~~~riv~~LL~~mdg~~-----------~~~~V~VIaaTN~~d-------------~LD~ALrR~GRFd~ 365 (806)
T 3cf2_A 310 APKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMAATNRPN-------------SIDPALRRFGRFDR 365 (806)
T ss_dssp CCTTTTCCCTTHHHHHHHHHTHHHHCC-----------GGGCEEEEEECSSTT-------------TSCTTTTSTTSSCE
T ss_pred ccccCCCCChHHHHHHHHHHHHHhccc-----------ccCCEEEEEecCChh-------------hcCHHHhCCcccce
Confidence 6532 123444443210 134578999999876 78999998 9999
Q ss_pred EEEecCCCChhHhHHHHHHHHhhccCCC
Q 002353 679 LCVVKDVVDPVVDEMLAKFVIDSHFKSQ 706 (932)
Q Consensus 679 i~~l~D~~d~~~D~~La~~vl~~h~~~~ 706 (932)
.+.+ ..|+...-.. |+..|....
T Consensus 366 ~I~i-~~Pd~~~R~~----IL~~~l~~~ 388 (806)
T 3cf2_A 366 EVDI-GIPDATGRLE----ILQIHTKNM 388 (806)
T ss_dssp EEEC-CCCCHHHHHH----HHHHTCSSS
T ss_pred EEec-CCCCHHHHHH----HHHHHhcCC
Confidence 9887 5566555444 455555443
No 78
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.82 E-value=2.3e-08 Score=136.15 Aligned_cols=152 Identities=16% Similarity=0.172 Sum_probs=94.4
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCC-cEEe-cCC-CcccccccceeecCcccchhhhc--cCceeccC----CCeeeec
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQR-AVYT-TGK-GASAVGLTAAVHKDPVTREWTLE--GGALVLAD----RGICLID 606 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r-~v~~-~g~-~ss~~gLta~v~kd~~~g~~~le--~Gal~lAd----~GIl~ID 606 (932)
-||||+||||||||.+++......+. .+.. .-. .+++..+...+.. ..++... .|.+..+- ..|+|||
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~---~~e~~~~~~~G~~~~p~~~Gk~~VlFiD 1381 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDH---HCEYKRTPSGETVLRPTQLGKWLVVFCD 1381 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHH---HEEEEECTTSCEEEEESSTTCEEEEEET
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhh---cceEEeccCCCcccCCCcCCceEEEEec
Confidence 39999999999999887654433332 1111 111 1111111111100 0011111 15555543 2499999
Q ss_pred cccccCcc------hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCC--CccCCCCCcccccCCChhhhccccE
Q 002353 607 EFDKMNDQ------DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVG--GRYDSSKTFSENVELTDPIISRFDV 678 (932)
Q Consensus 607 E~dkm~~~------~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~--Gry~~~~~~~~ni~L~~~LLsRFDl 678 (932)
|++.-..+ ....|+++|+++.+...+.+....+ .++.+|||+||.+ |+. .|++.+++||-+
T Consensus 1382 DiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i-~d~~~vaamnPp~~gGr~----------~l~~Rf~r~F~v 1450 (3245)
T 3vkg_A 1382 EINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKL-DKIQFVGACNPPTDAGRV----------QLTHRFLRHAPI 1450 (3245)
T ss_dssp TTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEE-SSEEEEEEECCTTSTTCC----------CCCHHHHTTCCE
T ss_pred ccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEe-cCeEEEEEcCCCCCCCCc----------cCCHHHHhhceE
Confidence 99965543 4567889999988777555555555 7899999999984 554 799999999998
Q ss_pred EEEecCCCChhHhHHHHHHHHhhcc
Q 002353 679 LCVVKDVVDPVVDEMLAKFVIDSHF 703 (932)
Q Consensus 679 i~~l~D~~d~~~D~~La~~vl~~h~ 703 (932)
+.+ +.|+.+.-..|...++..+.
T Consensus 1451 i~i--~~ps~esL~~If~til~~~l 1473 (3245)
T 3vkg_A 1451 LLV--DFPSTSSLTQIYGTFNRALM 1473 (3245)
T ss_dssp EEC--CCCCHHHHHHHHHHHHHHHT
T ss_pred EEe--CCCCHHHHHHHHHHHHHHHH
Confidence 666 66776666666655555443
No 79
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.81 E-value=4.3e-09 Score=128.87 Aligned_cols=168 Identities=21% Similarity=0.257 Sum_probs=96.0
Q ss_pred cccChHHHHHHHhhhhhcCccc-cccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeec
Q 002353 503 SIYGHEDIKTALALSMFGGQEK-NVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHK 581 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k-~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~k 581 (932)
.|.|.+.+|+.|.-++.-.... ..-.+..++..-+|||+||||||||++|++++..+...++.. .+ ..+......
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v-~~---~~l~s~~vG 553 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI-KG---PELLTMWFG 553 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEEC-CH---HHHHTTTCS
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEe-cc---chhhccccc
Confidence 3578999999887665432110 000111233344799999999999999999999998776653 11 112111111
Q ss_pred CcccchhhhccCceecc---CCCeeeeccccccCcch--------------hhhHHHHHhhceeeeeccceeEeeccceE
Q 002353 582 DPVTREWTLEGGALVLA---DRGICLIDEFDKMNDQD--------------RVSIHEAMEQQSISISKAGIVTSLQARCS 644 (932)
Q Consensus 582 d~~~g~~~le~Gal~lA---d~GIl~IDE~dkm~~~~--------------~~~L~eamEqq~isi~kagi~~~l~ar~s 644 (932)
.. +..+. ..+..| ..+|+||||||.+-... .+.|+..|+.- .-..++.
T Consensus 554 es---e~~vr-~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~-----------~~~~~V~ 618 (806)
T 3cf2_A 554 ES---EANVR-EIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM-----------STKKNVF 618 (806)
T ss_dssp SC---HHHHH-HHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSS-----------CSSSSEE
T ss_pred hH---HHHHH-HHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCC-----------CCCCCEE
Confidence 11 10110 011222 34799999999885321 23344444421 0134578
Q ss_pred EEeeeCCCCCccCCCCCcccccCCChhhhc--cccEEEEecCCCChhHhHHHHHHHHhhccCCCC
Q 002353 645 VIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQP 707 (932)
Q Consensus 645 IIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~ 707 (932)
||||||.+. .|++++++ |||..+.+ +.|+...-. .|+..|.+..+
T Consensus 619 vi~aTN~p~-------------~lD~AllRpgRfd~~i~v-~lPd~~~R~----~il~~~l~~~~ 665 (806)
T 3cf2_A 619 IIGATNRPD-------------IIDPAILRPGRLDQLIYI-PLPDEKSRV----AILKANLRKSP 665 (806)
T ss_dssp EECC-CCSS-------------SSCHHHHSTTTSCCEEEC------CHHH----HTTTTTSSCC-
T ss_pred EEEeCCCch-------------hCCHhHcCCCcceEEEEE-CCcCHHHHH----HHHHHHhcCCC
Confidence 999999876 89999999 99999887 555544333 45666665544
No 80
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.81 E-value=6.1e-08 Score=107.97 Aligned_cols=228 Identities=18% Similarity=0.141 Sum_probs=123.4
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCC------Cc-EEecCCC-cccc
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQ------RA-VYTTGKG-ASAV 573 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~------r~-v~~~g~~-ss~~ 573 (932)
..++|++.....+.-.+...... ..+. +++|+|+||||||+|++.+++.+. .. ++..+.. .+..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~--~~~~------~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 91 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYRE--EKPN------NIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPY 91 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGT--CCCC------CEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC--CCCC------eEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHH
Confidence 55789888877776555432100 1111 899999999999999999998652 22 2222110 0000
Q ss_pred cccceeec--------Ccc-cch-hhhccCceeccC-CCeeeeccccccCcc----hhhhHHHHHhhceeeeeccceeEe
Q 002353 574 GLTAAVHK--------DPV-TRE-WTLEGGALVLAD-RGICLIDEFDKMNDQ----DRVSIHEAMEQQSISISKAGIVTS 638 (932)
Q Consensus 574 gLta~v~k--------d~~-~g~-~~le~Gal~lAd-~GIl~IDE~dkm~~~----~~~~L~eamEqq~isi~kagi~~~ 638 (932)
.+...+.. ... ... +..-...+.... ..+++|||++.+... ....|...++..
T Consensus 92 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~------------ 159 (386)
T 2qby_A 92 RVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV------------ 159 (386)
T ss_dssp HHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC------------
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc------------
Confidence 00000000 000 000 000000111111 358999999998743 223333334321
Q ss_pred eccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccE-EEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCc
Q 002353 639 LQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDV-LCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSK 717 (932)
Q Consensus 639 l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDl-i~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~ 717 (932)
-..++.+|+++|... + .-.+.+.+.+||.. .+.+ ...+
T Consensus 160 ~~~~~~~I~~~~~~~--------~--~~~~~~~~~~r~~~~~i~l-~~l~------------------------------ 198 (386)
T 2qby_A 160 NKSKISFIGITNDVK--------F--VDLLDPRVKSSLSEEEIIF-PPYN------------------------------ 198 (386)
T ss_dssp CC--EEEEEEESCGG--------G--GGGCTTHHHHTTTTEEEEE-CCCC------------------------------
T ss_pred CCCeEEEEEEECCCC--------h--HhhhCHHHhccCCCeeEEe-CCCC------------------------------
Confidence 124567889998642 0 01466788889863 3443 2222
Q ss_pred cchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcC-CCcCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHH
Q 002353 718 NESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNV-FPRLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMS 795 (932)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~-~P~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlA 795 (932)
.+.+..++. .+.... ...+++++.+.|..+.. ...+++|.+..+++.+
T Consensus 199 --------------------~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~G~~r~~~~ll~~a 248 (386)
T 2qby_A 199 --------------------AEELEDILTKRAQMAFKPGVLPDNVIKLCAALAA----------REHGDARRALDLLRVS 248 (386)
T ss_dssp --------------------HHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHH----------HTTCCHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH----------HhcCCHHHHHHHHHHH
Confidence 222222222 111111 23567777777766521 1126899999999998
Q ss_pred HHHHHhhCCCCcCHHHHHHHHHHHH
Q 002353 796 EAHARMRLRQHVTQEDVNMAIRVLL 820 (932)
Q Consensus 796 eA~Akl~lr~~Vt~~Dv~~AI~l~~ 820 (932)
...|....+..|+.+|+..|+.-+.
T Consensus 249 ~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 249 GEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCccCHHHHHHHHHHHh
Confidence 8888877888999999999987654
No 81
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.79 E-value=1.9e-08 Score=125.47 Aligned_cols=215 Identities=15% Similarity=0.183 Sum_probs=115.5
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCC----------CcEEecCCCcc
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQ----------RAVYTTGKGAS 571 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~----------r~v~~~g~~ss 571 (932)
..++|++.....++-.|..+. .-|+||+|+||||||++++.+++.+. ..++...
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~---- 233 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ---- 233 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC----
T ss_pred cccCCcHHHHHHHHHHHhcCC------------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee----
Confidence 347788877777766665431 11899999999999999999998752 1222110
Q ss_pred cccccceeecCcccchhhhc-cCceec---c-CCCeeeeccccccC--------cchhhhHHHHHhhceeeeeccceeEe
Q 002353 572 AVGLTAAVHKDPVTREWTLE-GGALVL---A-DRGICLIDEFDKMN--------DQDRVSIHEAMEQQSISISKAGIVTS 638 (932)
Q Consensus 572 ~~gLta~v~kd~~~g~~~le-~Gal~l---A-d~GIl~IDE~dkm~--------~~~~~~L~eamEqq~isi~kagi~~~ 638 (932)
...+.++. ...|++.-. ...+.. . ...|+||||++.+. ......|..+++.+.
T Consensus 234 ~~~l~~g~---~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~----------- 299 (854)
T 1qvr_A 234 MGSLLAGA---KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGE----------- 299 (854)
T ss_dssp C--------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTC-----------
T ss_pred hHHhhccC---ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCC-----------
Confidence 00111100 011111110 001111 1 23599999999987 333445666665443
Q ss_pred eccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhHHHHHHHHhhccCCCCCCCCCCCCCcc
Q 002353 639 LQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKN 718 (932)
Q Consensus 639 l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~ 718 (932)
+.+|+|+|+.. +.. +.++++|++||+.+. + +.|+...-..+.+.++..+...+.
T Consensus 300 ----i~~I~at~~~~--------~~~-~~~d~aL~rRf~~i~-l-~~p~~~e~~~iL~~~~~~~~~~~~----------- 353 (854)
T 1qvr_A 300 ----LRLIGATTLDE--------YRE-IEKDPALERRFQPVY-V-DEPTVEETISILRGLKEKYEVHHG----------- 353 (854)
T ss_dssp ----CCEEEEECHHH--------HHH-HTTCTTTCSCCCCEE-E-CCCCHHHHHHHHHHHHHHHHHHTT-----------
T ss_pred ----eEEEEecCchH--------Hhh-hccCHHHHhCCceEE-e-CCCCHHHHHHHHHhhhhhhhhhcC-----------
Confidence 45789998742 111 467899999999743 3 667766556666666553322111
Q ss_pred chhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCC-cCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHH
Q 002353 719 ESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFP-RLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIES 790 (932)
Q Consensus 719 ~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P-~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEs 790 (932)
..++.+.+...+.++..++.. .++..+.+.+...-...|.... ++|..+..++.
T Consensus 354 ---------------~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~~~---~~p~~l~~~~~ 408 (854)
T 1qvr_A 354 ---------------VRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALE---SAPEEIDALER 408 (854)
T ss_dssp ---------------CEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTT---THHHHHHHHHH
T ss_pred ---------------CCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhhcc---CCchhHHHHHH
Confidence 125667777777777776665 4566777777766655554321 34444444443
No 82
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.76 E-value=1.1e-07 Score=129.07 Aligned_cols=188 Identities=16% Similarity=0.171 Sum_probs=127.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEec--CCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTT--GKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQ 614 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~--g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~ 614 (932)
++++.||||||||.+++++++.+.+.++.. ..+.....+ |. +-.|+ ...|.++|+|||++++++
T Consensus 647 ~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~l----------g~--~~~g~--~~~Gaw~~~DE~nr~~~e 712 (2695)
T 4akg_A 647 GGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVL----------SR--LLVGI--TQIGAWGCFDEFNRLDEK 712 (2695)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHH----------HH--HHHHH--HHHTCEEEEETTTSSCHH
T ss_pred CCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHh----------hH--HHHHH--HhcCCEeeehhhhhcChH
Confidence 789999999999999999999998876552 222221111 00 00111 123579999999999999
Q ss_pred hhhhH-------HHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCC
Q 002353 615 DRVSI-------HEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVD 687 (932)
Q Consensus 615 ~~~~L-------~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d 687 (932)
....| .++|..+..++.-.|....++..+.|++|+||. |. ....|+++|.+||--+.+ +.||
T Consensus 713 vLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPg---y~------g~~eLP~~Lk~~Fr~v~m--~~Pd 781 (2695)
T 4akg_A 713 VLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPG---YN------GRSELPENLKKSFREFSM--KSPQ 781 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCC---SS------SSCCCCHHHHTTEEEEEC--CCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCC---cc------CcccccHHHHhheEEEEe--eCCC
Confidence 88776 677877776666678888999999999999993 21 123899999999965444 3444
Q ss_pred hhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHHH
Q 002353 688 PVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTHV 767 (932)
Q Consensus 688 ~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~~ 767 (932)
... +++- +.++.. +...+..+.++..+
T Consensus 782 ~~~---i~ei-----------------------------------------------~l~s~G---f~~a~~la~kiv~~ 808 (2695)
T 4akg_A 782 SGT---IAEM-----------------------------------------------ILQIMG---FEDSKSLASKIVHF 808 (2695)
T ss_dssp HHH---HHHH-----------------------------------------------HHHHHH---CSSHHHHHHHHHHH
T ss_pred HHH---HHHH-----------------------------------------------HHHhcC---CCchHHHHHHHHHH
Confidence 322 2222 122221 22234455677788
Q ss_pred HHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhh
Q 002353 768 YAELRRESSHGQGVPIAVRHIESMIRMSEAHARMR 802 (932)
Q Consensus 768 Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~ 802 (932)
|..+|..-.....+..+.|.|.++++.|...-+-.
T Consensus 809 ~~l~~e~ls~q~hydfglRalksvL~~ag~lkr~~ 843 (2695)
T 4akg_A 809 LELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEF 843 (2695)
T ss_dssp HHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhCcCCcccccHHHHHHHHHHHHHhhccC
Confidence 88777655444566779999999999887665543
No 83
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.75 E-value=1.4e-07 Score=111.14 Aligned_cols=123 Identities=15% Similarity=0.149 Sum_probs=63.0
Q ss_pred cccChHHHHHHHhhhhhcCcccc---cc-Cccc-ccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEec-CCCccccccc
Q 002353 503 SIYGHEDIKTALALSMFGGQEKN---VK-GKHR-LRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTT-GKGASAVGLT 576 (932)
Q Consensus 503 ~I~G~~~vK~aillaL~gg~~k~---~~-~~~~-~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~-g~~ss~~gLt 576 (932)
.|.|++.++..+.-.+....... .. .+.. ....-++||+||||||||++|+++++.+...++.. ........+.
T Consensus 40 dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~ 119 (516)
T 1sxj_A 40 QVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLL 119 (516)
T ss_dssp GCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHH
Confidence 57788887777665554311000 00 0000 00113899999999999999999999886544432 1110000000
Q ss_pred ceeecC-----cccchhhhc-cCceeccCCCeeeeccccccCcchh---hhHHHHHhh
Q 002353 577 AAVHKD-----PVTREWTLE-GGALVLADRGICLIDEFDKMNDQDR---VSIHEAMEQ 625 (932)
Q Consensus 577 a~v~kd-----~~~g~~~le-~Gal~lAd~GIl~IDE~dkm~~~~~---~~L~eamEq 625 (932)
...... ...+.+... .+......++|++|||++.|....+ ..|...++.
T Consensus 120 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~ 177 (516)
T 1sxj_A 120 NAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK 177 (516)
T ss_dssp HHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh
Confidence 000000 000000000 0001123557999999999988766 566666664
No 84
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.73 E-value=7.1e-09 Score=103.21 Aligned_cols=150 Identities=17% Similarity=0.230 Sum_probs=81.7
Q ss_pred HHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecC-CCccc
Q 002353 494 ERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTG-KGASA 572 (932)
Q Consensus 494 ~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g-~~ss~ 572 (932)
+.+...-...++|++.....+.-.+..+. + -++||+|+||||||++++.+++.+....+... .+...
T Consensus 14 ~~~~~~~~~~~~g~~~~~~~l~~~l~~~~------~------~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T 1jbk_A 14 ERAEQGKLDPVIGRDEEIRRTIQVLQRRT------K------NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 81 (195)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHTSSS------S------CEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred HHHhhccccccccchHHHHHHHHHHhcCC------C------CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcE
Confidence 34444445668899888887776665431 1 18999999999999999999987532100000 00000
Q ss_pred ccccceee--cCcccchhhhcc----CceeccCC-CeeeeccccccCc--------chhhhHHHHHhhceeeeeccceeE
Q 002353 573 VGLTAAVH--KDPVTREWTLEG----GALVLADR-GICLIDEFDKMND--------QDRVSIHEAMEQQSISISKAGIVT 637 (932)
Q Consensus 573 ~gLta~v~--kd~~~g~~~le~----Gal~lAd~-GIl~IDE~dkm~~--------~~~~~L~eamEqq~isi~kagi~~ 637 (932)
..+.+... .....+.+.-.. ..+..+.+ .+++|||++.+.. ..+..|...++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~----------- 150 (195)
T 1jbk_A 82 LALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG----------- 150 (195)
T ss_dssp EEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT-----------
T ss_pred EEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccC-----------
Confidence 00000000 000011111000 00111233 3899999999963 3344555555432
Q ss_pred eeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccE
Q 002353 638 SLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDV 678 (932)
Q Consensus 638 ~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDl 678 (932)
++.+|+++|+.. +.....+++++++||+.
T Consensus 151 ----~~~~i~~~~~~~--------~~~~~~~~~~l~~r~~~ 179 (195)
T 1jbk_A 151 ----ELHCVGATTLDE--------YRQYIEKDAALERRFQK 179 (195)
T ss_dssp ----SCCEEEEECHHH--------HHHHTTTCHHHHTTEEE
T ss_pred ----CeEEEEeCCHHH--------HHHHHhcCHHHHHHhce
Confidence 356788888632 11223678999999994
No 85
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.71 E-value=3.8e-09 Score=105.13 Aligned_cols=150 Identities=15% Similarity=0.186 Sum_probs=80.7
Q ss_pred HHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecC-CCccccc
Q 002353 496 IIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTG-KGASAVG 574 (932)
Q Consensus 496 l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g-~~ss~~g 574 (932)
+...-...++|++.....++-.+..+. .-++||+|+||||||++++.+++.+........ .+.....
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~~~~------------~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (187)
T 2p65_A 16 ARAGKLDPVIGRDTEIRRAIQILSRRT------------KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS 83 (187)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTSSS------------SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEE
T ss_pred HhccccchhhcchHHHHHHHHHHhCCC------------CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEE
Confidence 333344568899887777776665421 118999999999999999999987532100000 0000000
Q ss_pred ccce--eecCcccchhh--hc--cCceecc-CCCeeeeccccccC---------cchhhhHHHHHhhceeeeeccceeEe
Q 002353 575 LTAA--VHKDPVTREWT--LE--GGALVLA-DRGICLIDEFDKMN---------DQDRVSIHEAMEQQSISISKAGIVTS 638 (932)
Q Consensus 575 Lta~--v~kd~~~g~~~--le--~Gal~lA-d~GIl~IDE~dkm~---------~~~~~~L~eamEqq~isi~kagi~~~ 638 (932)
+.+. .......+.+. +. ...+..+ ...+++|||++.+. ......|...++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~------------- 150 (187)
T 2p65_A 84 LDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR------------- 150 (187)
T ss_dssp ECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT-------------
T ss_pred EeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc-------------
Confidence 0000 00000011110 00 0111122 23499999999997 2233344444443
Q ss_pred eccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEE
Q 002353 639 LQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLC 680 (932)
Q Consensus 639 l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~ 680 (932)
.++.+|+++|+.. ......+++++++||+.+.
T Consensus 151 --~~~~ii~~~~~~~--------~~~~~~~~~~l~~R~~~i~ 182 (187)
T 2p65_A 151 --GELRCIGATTVSE--------YRQFIEKDKALERRFQQIL 182 (187)
T ss_dssp --TCSCEEEEECHHH--------HHHHTTTCHHHHHHEEEEE
T ss_pred --CCeeEEEecCHHH--------HHHHHhccHHHHHhcCccc
Confidence 2356899998642 1112357899999999643
No 86
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.57 E-value=4e-07 Score=100.47 Aligned_cols=143 Identities=10% Similarity=-0.004 Sum_probs=76.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC-----------cEEecCCCcccc-----cccceeecCcccchh---hhcc--Cce
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR-----------AVYTTGKGASAV-----GLTAAVHKDPVTREW---TLEG--GAL 595 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r-----------~v~~~g~~ss~~-----gLta~v~kd~~~g~~---~le~--Gal 595 (932)
++||+|+||||||.+++++++.+.. -++..+...+.. .+...+.....+..+ .+.. ..+
T Consensus 47 ~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~ 126 (318)
T 3te6_A 47 LFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNV 126 (318)
T ss_dssp EEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHh
Confidence 8999999999999999999887521 122232221100 000000000000000 0000 000
Q ss_pred --eccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhh
Q 002353 596 --VLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPII 673 (932)
Q Consensus 596 --~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LL 673 (932)
......|++|||+|.+. .+..|+..++-.. .-++++.||+.+|...-.+ ..|++++.
T Consensus 127 ~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~----------~~~s~~~vI~i~n~~d~~~---------~~L~~~v~ 185 (318)
T 3te6_A 127 PKAKKRKTLILIQNPENLL--SEKILQYFEKWIS----------SKNSKLSIICVGGHNVTIR---------EQINIMPS 185 (318)
T ss_dssp CGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHH----------CSSCCEEEEEECCSSCCCH---------HHHHTCHH
T ss_pred hhccCCceEEEEecHHHhh--cchHHHHHHhccc----------ccCCcEEEEEEecCcccch---------hhcchhhh
Confidence 01123599999999998 5667777775211 1145678999999742100 13456678
Q ss_pred ccccEEEEecCCCChhHhHHHHHHHHh
Q 002353 674 SRFDVLCVVKDVVDPVVDEMLAKFVID 700 (932)
Q Consensus 674 sRFDli~~l~D~~d~~~D~~La~~vl~ 700 (932)
|||....+.....+.++-..|.++-+.
T Consensus 186 SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 186 LKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred ccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 999864333455566555555555444
No 87
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.44 E-value=1.9e-08 Score=124.47 Aligned_cols=167 Identities=20% Similarity=0.228 Sum_probs=92.3
Q ss_pred ccccChHHHHHHHhhhhhcCccc-cccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceee
Q 002353 502 PSIYGHEDIKTALALSMFGGQEK-NVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVH 580 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k-~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~ 580 (932)
..+.|.+.+|+.+.-.+.-.... .......++..-++||+||||||||+|+++++..+...++... + ..+.....
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~-~---~~l~~~~~ 552 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK-G---PELLTMWF 552 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCC-C---SSSTTCCT
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEe-c---hHhhhhhc
Confidence 35778999999887655422111 0000112233348999999999999999999998765443211 1 11111110
Q ss_pred cCcccchhhhccCceecc---CCCeeeeccccccCcch--------------hhhHHHHHhhceeeeeccceeEeeccce
Q 002353 581 KDPVTREWTLEGGALVLA---DRGICLIDEFDKMNDQD--------------RVSIHEAMEQQSISISKAGIVTSLQARC 643 (932)
Q Consensus 581 kd~~~g~~~le~Gal~lA---d~GIl~IDE~dkm~~~~--------------~~~L~eamEqq~isi~kagi~~~l~ar~ 643 (932)
..... .+ ...+..+ ..+|+||||++.+.... ...|+..|+.. .-..++
T Consensus 553 g~~~~---~i-~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~-----------~~~~~v 617 (806)
T 1ypw_A 553 GESEA---NV-REIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM-----------STKKNV 617 (806)
T ss_dssp TTSSH---HH-HHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-----------------CC
T ss_pred CccHH---HH-HHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcc-----------cccCCe
Confidence 00000 00 0011111 23799999999985432 12333333321 112467
Q ss_pred EEEeeeCCCCCccCCCCCcccccCCChhhhc--cccEEEEecCCCChhHhHHHHHHHHhhccCC
Q 002353 644 SVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFDVLCVVKDVVDPVVDEMLAKFVIDSHFKS 705 (932)
Q Consensus 644 sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFDli~~l~D~~d~~~D~~La~~vl~~h~~~ 705 (932)
.||||||+.. .|++++++ ||+.++.+ ..|+...-. .|+..|...
T Consensus 618 ~vI~tTN~~~-------------~ld~allrpgRf~~~i~~-~~p~~~~r~----~Il~~~l~~ 663 (806)
T 1ypw_A 618 FIIGATNRPD-------------IIDPAILRPGRLDQLIYI-PLPDEKSRV----AILKANLRK 663 (806)
T ss_dssp BCCCCCBSCG-------------GGSCTTSSGGGTTSCCCC-CCCCCSHHH----HHTTTTTSC
T ss_pred EEEEecCCcc-------------cCCHHHhCccccCceeec-CCCCHHHHH----HHHHHHhcc
Confidence 8999999865 68899999 99977766 445544333 345555443
No 88
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.36 E-value=2.7e-06 Score=94.39 Aligned_cols=134 Identities=13% Similarity=0.105 Sum_probs=76.5
Q ss_pred hHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEE----ecCCC-----------cc
Q 002353 507 HEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVY----TTGKG-----------AS 571 (932)
Q Consensus 507 ~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~----~~g~~-----------ss 571 (932)
|+.+.+.+.-++-.|. . .| .+||+||||||||++++++++.+..... .+|.- ..
T Consensus 7 ~~~~~~~l~~~i~~~~---~--~~------a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGR---G--HH------ALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_dssp GHHHHHHHHHHHHTTC---C--CS------EEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHHcCC---c--ce------eEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 4555555555555441 1 11 4999999999999999999986432110 01110 00
Q ss_pred cccccceeecCcccch---hhh--ccCce-eccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEE
Q 002353 572 AVGLTAAVHKDPVTRE---WTL--EGGAL-VLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSV 645 (932)
Q Consensus 572 ~~gLta~v~kd~~~g~---~~l--e~Gal-~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sI 645 (932)
...+.+. ......+. ..+ ..... ..+...|++|||++.|+...+++|+..||+- +..+.+
T Consensus 76 ~~~~~~~-~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep-------------~~~~~~ 141 (334)
T 1a5t_A 76 YYTLAPE-KGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEP-------------PAETWF 141 (334)
T ss_dssp EEEECCC-TTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSC-------------CTTEEE
T ss_pred EEEEecc-ccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCC-------------CCCeEE
Confidence 0000000 00000000 000 00000 1234579999999999999999999999852 234566
Q ss_pred EeeeCCCCCccCCCCCcccccCCChhhhccccE
Q 002353 646 IAAANPVGGRYDSSKTFSENVELTDPIISRFDV 678 (932)
Q Consensus 646 IAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDl 678 (932)
|.+||... .+.+++.||+..
T Consensus 142 Il~t~~~~-------------~l~~ti~SRc~~ 161 (334)
T 1a5t_A 142 FLATREPE-------------RLLATLRSRCRL 161 (334)
T ss_dssp EEEESCGG-------------GSCHHHHTTSEE
T ss_pred EEEeCChH-------------hCcHHHhhccee
Confidence 77776532 688999999964
No 89
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=2.7e-06 Score=93.40 Aligned_cols=137 Identities=14% Similarity=0.081 Sum_probs=75.6
Q ss_pred ChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCccccccccee-ecCc-
Q 002353 506 GHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAV-HKDP- 583 (932)
Q Consensus 506 G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v-~kd~- 583 (932)
||+.+...+.-++-.+. .+ +.||+||||||||++++++++..... .........+.+.. ....
T Consensus 1 g~~~~~~~L~~~i~~~~------~~------~~Lf~Gp~G~GKtt~a~~la~~~~~~---~~~~~d~~~l~~~~~~~~id 65 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE------GI------SILINGEDLSYPREVSLELPEYVEKF---PPKASDVLEIDPEGENIGID 65 (305)
T ss_dssp ---CHHHHHHHHHHTCS------SE------EEEEECSSSSHHHHHHHHHHHHHHTS---CCCTTTEEEECCSSSCBCHH
T ss_pred ChHHHHHHHHHHHHCCC------Cc------EEEEECCCCCCHHHHHHHHHHhCchh---hccCCCEEEEcCCcCCCCHH
Confidence 55556665555555441 12 89999999999999999998842100 00000000011100 0000
Q ss_pred ccchhhhccCce-eccCCCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCc
Q 002353 584 VTREWTLEGGAL-VLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTF 662 (932)
Q Consensus 584 ~~g~~~le~Gal-~lAd~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~ 662 (932)
.-.+..-..... ..+...|++|||++.|+...+++|+..||+- +..+.+|.+||...
T Consensus 66 ~ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep-------------~~~t~fIl~t~~~~--------- 123 (305)
T 2gno_A 66 DIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEP-------------PEYAVIVLNTRRWH--------- 123 (305)
T ss_dssp HHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSC-------------CTTEEEEEEESCGG---------
T ss_pred HHHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCC-------------CCCeEEEEEECChH---------
Confidence 000000000001 1234579999999999999999999999953 23445555555322
Q ss_pred ccccCCChhhhccccEEEEecCCC
Q 002353 663 SENVELTDPIISRFDVLCVVKDVV 686 (932)
Q Consensus 663 ~~ni~L~~~LLsRFDli~~l~D~~ 686 (932)
.+.+++.|| ++.+....
T Consensus 124 ----kl~~tI~SR---~~~f~~l~ 140 (305)
T 2gno_A 124 ----YLLPTIKSR---VFRVVVNV 140 (305)
T ss_dssp ----GSCHHHHTT---SEEEECCC
T ss_pred ----hChHHHHce---eEeCCCCC
Confidence 688999999 55554333
No 90
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.22 E-value=1.2e-06 Score=108.36 Aligned_cols=128 Identities=20% Similarity=0.259 Sum_probs=75.9
Q ss_pred CceEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhc-cCcee---ccCCCeeeeccccc
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLE-GGALV---LADRGICLIDEFDK 610 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le-~Gal~---lAd~GIl~IDE~dk 610 (932)
.-+|||+|+||||||+|+++++..++..++... +.. +.. ...++..-. ...+. ....+++||||++.
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~-~~~---l~~-----~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~ 308 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLIN-GPE---IMS-----KLAGESESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEE-HHH---HSS-----SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGG
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEE-chH---hhh-----hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHH
Confidence 338999999999999999999998876544311 000 100 000111000 00111 12347999999988
Q ss_pred cCcc-----------hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhc--ccc
Q 002353 611 MNDQ-----------DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIIS--RFD 677 (932)
Q Consensus 611 m~~~-----------~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLs--RFD 677 (932)
+... ....|+..|+... -...+.+|+|+|+.. .+++++.+ ||+
T Consensus 309 l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-----------~~~~v~vI~atn~~~-------------~ld~al~r~gRf~ 364 (806)
T 1ypw_A 309 IAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMAATNRPN-------------SIDPALRRFGRFD 364 (806)
T ss_dssp TSCTTSCCCSHHHHHHHHHHHHHHHSSC-----------TTSCCEEEEECSCTT-------------TSCTTTTSTTSSC
T ss_pred hhhccccccchHHHHHHHHHHHHhhhhc-----------ccccEEEecccCCch-------------hcCHHHhcccccc
Confidence 7653 2234555555221 124678999999864 56777776 899
Q ss_pred EEEEecCCCChhHhHHHHH
Q 002353 678 VLCVVKDVVDPVVDEMLAK 696 (932)
Q Consensus 678 li~~l~D~~d~~~D~~La~ 696 (932)
..+.+ ..++......+..
T Consensus 365 ~~i~i-~~p~~~~r~~il~ 382 (806)
T 1ypw_A 365 REVDI-GIPDATGRLEILQ 382 (806)
T ss_dssp EEECC-CCCCHHHHHHHHH
T ss_pred ccccc-CCCCHHHHHHHHH
Confidence 77665 4555555444443
No 91
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.21 E-value=1e-05 Score=110.80 Aligned_cols=188 Identities=16% Similarity=0.182 Sum_probs=115.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe--cCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT--TGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQ 614 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~--~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~ 614 (932)
+..+.||+|||||.+++.+++.+.+.+++ +..+.....+ | .+-.|+. ..|+.+|+|||++++.+
T Consensus 606 gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~----------g--~i~~G~~--~~GaW~cfDEfNrl~~~ 671 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAM----------S--RIFVGLC--QCGAWGCFDEFNRLEER 671 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHH----------H--HHHHHHH--HHTCEEEEETTTSSCHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHH----------H--HHHhhHh--hcCcEEEehhhhcCCHH
Confidence 56788999999999999999999988765 2222211111 0 0112211 24678899999999999
Q ss_pred hhhhHHHHHh-------hceeeeecc-ceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCC
Q 002353 615 DRVSIHEAME-------QQSISISKA-GIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVV 686 (932)
Q Consensus 615 ~~~~L~eamE-------qq~isi~ka-gi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~ 686 (932)
....+.+.+. .+.-.+.-. |....++..|.|++|+||-+ .....|+++|.+||--+.. ..|
T Consensus 672 vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY---------~gr~eLP~nLk~lFr~v~m--~~P 740 (3245)
T 3vkg_A 672 ILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGY---------AGRSNLPDNLKKLFRSMAM--IKP 740 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCG---------GGCCCSCHHHHTTEEEEEC--CSC
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCc---------cCcccChHHHHhhcEEEEE--eCC
Confidence 8877776554 222222224 66778899999999999932 1223899999999977555 334
Q ss_pred ChhHhHHHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHHHHhhcCCCcCChhHHHHHHH
Q 002353 687 DPVVDEMLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYITYAKLNVFPRLHDPDMEKLTH 766 (932)
Q Consensus 687 d~~~D~~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~yar~~~~P~Ls~ea~~~L~~ 766 (932)
|.. .+++-+|.+ ... .-....+.++..
T Consensus 741 d~~---~i~ei~L~s-----------------------------------------------~Gf---~~a~~La~k~~~ 767 (3245)
T 3vkg_A 741 DRE---MIAQVMLYS-----------------------------------------------QGF---KTAEVLAGKIVP 767 (3245)
T ss_dssp CHH---HHHHHHHHT-----------------------------------------------TTC---SCHHHHHHHHHH
T ss_pred CHH---HHHHHHHHH-----------------------------------------------ccc---chHHHHHHHHHH
Confidence 432 233322221 110 001223445666
Q ss_pred HHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhh
Q 002353 767 VYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMR 802 (932)
Q Consensus 767 ~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~ 802 (932)
.|.-.+..-..-.++-...|.+.++++.|-+.-|-.
T Consensus 768 ~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~lkr~~ 803 (3245)
T 3vkg_A 768 LFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIKRKC 803 (3245)
T ss_dssp HHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHhh
Confidence 665555433333355678999999999887765533
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.06 E-value=4.9e-06 Score=81.57 Aligned_cols=101 Identities=11% Similarity=0.211 Sum_probs=63.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC----cEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR----AVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMN 612 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r----~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~ 612 (932)
+++|+|++|+|||+|++.++..... .+|..+.. + ... ++ +.+..+++|||++.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~-----~---------~~~------~~-~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAAS-----M---------PLT------DA-AFEAEYLAVDQVEKLG 96 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTT-----S---------CCC------GG-GGGCSEEEEESTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHH-----h---------hHH------HH-HhCCCEEEEeCccccC
Confidence 7999999999999999999987632 11211110 0 000 11 2345799999999998
Q ss_pred cchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEE
Q 002353 613 DQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVL 679 (932)
Q Consensus 613 ~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli 679 (932)
...+..|++.++... ..| ...+|.|+|.....+. .+ +.|.|||.--
T Consensus 97 ~~~~~~l~~li~~~~----~~g-------~~~iiits~~~p~~l~---------~~-~~L~SRl~~g 142 (149)
T 2kjq_A 97 NEEQALLFSIFNRFR----NSG-------KGFLLLGSEYTPQQLV---------IR-EDLRTRMAYC 142 (149)
T ss_dssp SHHHHHHHHHHHHHH----HHT-------CCEEEEEESSCTTTSS---------CC-HHHHHHGGGS
T ss_pred hHHHHHHHHHHHHHH----HcC-------CcEEEEECCCCHHHcc---------cc-HHHHHHHhcC
Confidence 877888888876421 111 1125667775442221 23 8899998543
No 93
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.04 E-value=2.1e-05 Score=88.65 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=40.0
Q ss_pred cCChhHHHHHHHHHHHHHhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 002353 755 RLHDPDMEKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVL 819 (932)
Q Consensus 755 ~Ls~ea~~~L~~~Y~~lR~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~ 819 (932)
.+++++...|.+... +. .+..+++|.+..+++.+...|....+..|+.+++..|+.-.
T Consensus 236 ~~~~~~~~~i~~~~~---~~----~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 236 VWEPRHLELISDVYG---ED----KGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp SCCHHHHHHHHHHHC---GG----GTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHHH---Hh----ccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 566777666665421 00 00116899999999988888887788889999998876543
No 94
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.75 E-value=6.3e-06 Score=82.55 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=55.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC-C----cEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeecccc--
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ-R----AVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFD-- 609 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~-r----~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~d-- 609 (932)
+++|+||||||||+|+++++..+. . .++.+ ...+..........+. ...-.-.+.+..+++|||++
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD-----TKDLIFRLKHLMDEGK--DTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE-----HHHHHHHHHHHHHHTC--CSHHHHHHHTCSEEEEETCSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE-----HHHHHHHHHHHhcCch--HHHHHHHhcCCCEEEEeCCCCC
Confidence 899999999999999999998753 1 11111 0000000000000000 00000012356799999998
Q ss_pred ccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCC
Q 002353 610 KMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVG 653 (932)
Q Consensus 610 km~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~ 653 (932)
.+++..+..|++.++... ..+.++|.+||...
T Consensus 113 ~~~~~~~~~l~~ll~~~~------------~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 113 RLSDWQRELISYIITYRY------------NNLKSTIITTNYSL 144 (180)
T ss_dssp CCCHHHHHHHHHHHHHHH------------HTTCEEEEECCCCS
T ss_pred cCCHHHHHHHHHHHHHHH------------HcCCCEEEEcCCCh
Confidence 455666677777776431 12357888999765
No 95
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.74 E-value=4.7e-05 Score=78.50 Aligned_cols=113 Identities=22% Similarity=0.207 Sum_probs=63.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcch-
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQD- 615 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~- 615 (932)
++||+||||||||+++.++++.....+.. .+ ..+ +..| +. .+.+.-+++|||++...-..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g~i~~------fa-----ns~---s~f~-l~----~l~~~kIiiLDEad~~~~~~~ 120 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQGAVIS------FV-----NST---SHFW-LE----PLTDTKVAMLDDATTTCWTYF 120 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTCEECC------CC-----CSS---SCGG-GG----GGTTCSSEEEEEECHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee------EE-----ecc---chhh-hc----ccCCCCEEEEECCCchhHHHH
Confidence 79999999999999999999876322211 00 000 1111 11 12345699999998432111
Q ss_pred hhhHHHHHhhceeeee---ccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEE
Q 002353 616 RVSIHEAMEQQSISIS---KAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCV 681 (932)
Q Consensus 616 ~~~L~eamEqq~isi~---kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~ 681 (932)
...+..+|+...+++. +++.. .....+|.|||-.... . ..-.+|.||.-.++.
T Consensus 121 d~~lrn~ldG~~~~iD~Khr~~~~---~~~~PlIITtN~~~~~---------~-~~~~~L~SRi~~f~F 176 (212)
T 1tue_A 121 DTYMRNALDGNPISIDRKHKPLIQ---LKCPPILLTTNIHPAK---------D-NRWPYLESRITVFEF 176 (212)
T ss_dssp HHHCHHHHHTCCEEEC----CCEE---ECCCCEEEEESSCTTS---------S-SSCHHHHTSCEEEEC
T ss_pred HHHHHHHhCCCcccHHHhhcCccc---cCCCCEEEecCCCccc---------c-cchhhhhhhEEEEEc
Confidence 1234555555555441 22211 1133788899974321 1 123689999876665
No 96
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.64 E-value=6.3e-06 Score=90.55 Aligned_cols=122 Identities=11% Similarity=0.093 Sum_probs=59.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC-C---cE-EecCCCcccccccceeecCcccchhhhccCceeccCCCeeeecccccc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ-R---AV-YTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKM 611 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~-r---~v-~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm 611 (932)
+++|+|+||||||+||++++..+. + .+ |.. ...+...+......+.+.-..+ .+....++||||++..
T Consensus 154 ~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~-----~~~l~~~l~~~~~~~~~~~~~~--~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 154 GLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH-----FPSFAIDVKNAISNGSVKEEID--AVKNVPVLILDDIGAE 226 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE-----HHHHHHHHHCCCC----CCTTH--HHHTSSEEEEETCCC-
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE-----HHHHHHHHHHHhccchHHHHHH--HhcCCCEEEEcCCCCC
Confidence 899999999999999999998654 2 11 111 1111110000000010000000 1234469999999654
Q ss_pred C--cchhhhH-HHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcc---cccCCChhhhcccc
Q 002353 612 N--DQDRVSI-HEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFS---ENVELTDPIISRFD 677 (932)
Q Consensus 612 ~--~~~~~~L-~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~---~ni~L~~~LLsRFD 677 (932)
+ ...+..| +.+++... ..+.++|.|||.....+....... .+-.+..++++|.-
T Consensus 227 ~~~~~~~~~ll~~ll~~r~------------~~~~~~IitSN~~~~~l~~~~~~~~~g~~~~~~~~i~dRl~ 286 (308)
T 2qgz_A 227 QATSWVRDEVLQVILQYRM------------LEELPTFFTSNYSFADLERKWATIKGSDETWQAKRVMERVR 286 (308)
T ss_dssp -----CTTTTHHHHHHHHH------------HHTCCEEEEESSCHHHHHTTCC--------CCCCSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH------------HCCCcEEEECCCCHHHHHHHHhhccCccchhhhHHHHHHHH
Confidence 3 3334434 44665431 123468999997654443221110 11245667777753
No 97
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.52 E-value=2e-05 Score=80.26 Aligned_cols=24 Identities=21% Similarity=0.283 Sum_probs=22.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
+++|+|+||||||+|+++++..+.
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999998763
No 98
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.49 E-value=0.00043 Score=74.25 Aligned_cols=122 Identities=11% Similarity=0.079 Sum_probs=65.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecCcccchhhhccCceeccCCCeeeeccccccCcchh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDR 616 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd~~~g~~~le~Gal~lAd~GIl~IDE~dkm~~~~~ 616 (932)
+|||+||||||||.+++++++..+.. . .- +.. . ..+.+. .+.++-++++||.... .+..
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~~l~--G--~v-n~~-------~----~~f~l~----~~~~k~i~l~Ee~~~~-~d~~ 164 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTVPFY--G--CV-NWT-------N----ENFPFN----DCVDKMVIWWEEGKMT-AKVV 164 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCE--E--EC-CTT-------C----SSCTTG----GGSSCSEEEECSCCEE-TTTH
T ss_pred EEEEECCCCCCHHHHHHHHHhhhccc--c--ee-ecc-------c----cccccc----cccccEEEEeccccch-hHHH
Confidence 79999999999999999999875431 1 10 000 0 011111 1234456666666644 4555
Q ss_pred hhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEEEE
Q 002353 617 VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVLCV 681 (932)
Q Consensus 617 ~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~ 681 (932)
..+..+|+-+.+.+.........-.++.+|.+||-....+......+ -....+|-||.-.+-.
T Consensus 165 ~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s--~~~~~~L~sR~~~f~F 227 (267)
T 1u0j_A 165 ESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTT--FEHQQPLQDRMFKFEL 227 (267)
T ss_dssp HHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEE--CTTHHHHHTTEEEEEC
T ss_pred HHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccc--hhhhHHHhhhEEEEEC
Confidence 56777787666655322111112246688999997443211110000 1445678888754443
No 99
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.46 E-value=0.00037 Score=71.62 Aligned_cols=122 Identities=10% Similarity=0.015 Sum_probs=65.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC--------C-CcEEecCCCcccccccc--e-------eecCc-ccchhhhccCceec
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG--------Q-RAVYTTGKGASAVGLTA--A-------VHKDP-VTREWTLEGGALVL 597 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~--------~-r~v~~~g~~ss~~gLta--~-------v~kd~-~~g~~~le~Gal~l 597 (932)
..|++|+||+|||+++....... . |.+|.++...-..+... + ...+. ....|..- .....
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~-~~~~~ 85 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEW-IKKPE 85 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHH-TTSGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHH-hhccc
Confidence 67899999999999987754332 2 55654332111111110 0 00000 00111100 00011
Q ss_pred cCCCeeeeccccccCcc---h--hhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhh
Q 002353 598 ADRGICLIDEFDKMNDQ---D--RVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPI 672 (932)
Q Consensus 598 Ad~GIl~IDE~dkm~~~---~--~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~L 672 (932)
..+.|++|||.+.+-+. . ...++..++... .....||.++++.. .|+.++
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r------------~~~~~iil~tq~~~-------------~l~~~l 140 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR------------HQGIDIFVLTQGPK-------------LLDQNL 140 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT------------TTTCEEEEEESCGG-------------GBCHHH
T ss_pred cCceEEEEEChhhhccCccccchhHHHHHHHHhcC------------cCCeEEEEECCCHH-------------HHhHHH
Confidence 23789999999998322 1 113444444321 22346788888743 688889
Q ss_pred hccccEEEEecC
Q 002353 673 ISRFDVLCVVKD 684 (932)
Q Consensus 673 LsRFDli~~l~D 684 (932)
.+|++..+.+..
T Consensus 141 r~ri~~~~~l~~ 152 (199)
T 2r2a_A 141 RTLVRKHYHIAS 152 (199)
T ss_dssp HTTEEEEEEEEE
T ss_pred HHHhheEEEEcC
Confidence 999999998743
No 100
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.77 E-value=0.014 Score=64.24 Aligned_cols=185 Identities=14% Similarity=0.050 Sum_probs=100.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCc-ccccccceeecCcccchhhhccCce-eccCCCeeeeccccc-cCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGA-SAVGLTAAVHKDPVTREWTLEGGAL-VLADRGICLIDEFDK-MND 613 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~s-s~~gLta~v~kd~~~g~~~le~Gal-~lAd~GIl~IDE~dk-m~~ 613 (932)
..||+||+|+||++.++.+++.+... +... ....+.+ +.......-..... ..+++-|++|||.+. |+.
T Consensus 20 ~yl~~G~e~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~----~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~ 91 (343)
T 1jr3_D 20 AYLLLGNDPLLLQESQDAVRQVAAAQ----GFEEHHTFSIDP----NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNA 91 (343)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHH----TCCEEEEEECCT----TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCT
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhC----CCCeeEEEEecC----CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCCh
Confidence 78999999999999999887753210 0000 0000000 00000000000001 124567999999999 999
Q ss_pred chhhhHHHHHhhceeeeeccceeEeeccceEEE-eeeCCCCCccCCCCCcccccCCChhhhccccEEEEecCCCChhHhH
Q 002353 614 QDRVSIHEAMEQQSISISKAGIVTSLQARCSVI-AAANPVGGRYDSSKTFSENVELTDPIISRFDVLCVVKDVVDPVVDE 692 (932)
Q Consensus 614 ~~~~~L~eamEqq~isi~kagi~~~l~ar~sII-AAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli~~l~D~~d~~~D~ 692 (932)
..+.+|+..+|+- +..+.+| +++++... .....+.+++.+|.-.+ .+..
T Consensus 92 ~~~~aLl~~le~p-------------~~~~~~il~~~~~~~~--------~~~~k~~~~i~sr~~~~-~~~~-------- 141 (343)
T 1jr3_D 92 AINEQLLTLTGLL-------------HDDLLLIVRGNKLSKA--------QENAAWFTALANRSVQV-TCQT-------- 141 (343)
T ss_dssp THHHHHHHHHTTC-------------BTTEEEEEEESCCCTT--------TTTSHHHHHHTTTCEEE-EECC--------
T ss_pred HHHHHHHHHHhcC-------------CCCeEEEEEcCCCChh--------hHhhHHHHHHHhCceEE-EeeC--------
Confidence 8899999999841 2234444 44433210 01124667788887433 2210
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCccchhhhhhhhcccCCCCCCCHHHHHHHHH-HHhhcCCCcCChhHHHHHHHHHHHH
Q 002353 693 MLAKFVIDSHFKSQPKGVNLDDKSKNESEEDIQVADREIDPEILPQDLLKKYIT-YAKLNVFPRLHDPDMEKLTHVYAEL 771 (932)
Q Consensus 693 ~La~~vl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LrkyI~-yar~~~~P~Ls~ea~~~L~~~Y~~l 771 (932)
++...+.+++. .+++ -.-.+++++.+.|...
T Consensus 142 -------------------------------------------l~~~~l~~~l~~~~~~-~g~~i~~~a~~~l~~~---- 173 (343)
T 1jr3_D 142 -------------------------------------------PEQAQLPRWVAARAKQ-LNLELDDAANQVLCYC---- 173 (343)
T ss_dssp -------------------------------------------CCTTHHHHHHHHHHHH-TTCEECHHHHHHHHHS----
T ss_pred -------------------------------------------CCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHH----
Confidence 12223444444 2332 2446888888888763
Q ss_pred HhcccCCCCcccCHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 002353 772 RRESSHGQGVPIAVRHIESMIRMSEAHARMRLRQHVTQEDVNMAIRVL 819 (932)
Q Consensus 772 R~~~~~~~~~pitvR~LEslIRlAeA~Akl~lr~~Vt~~Dv~~AI~l~ 819 (932)
..++.|.+.+.+.-....+ ....||.+||...+...
T Consensus 174 ---------~~gdl~~~~~elekl~l~~---~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 174 ---------YEGNLLALAQALERLSLLW---PDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp ---------STTCHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHHH
T ss_pred ---------hchHHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhhh
Confidence 3457777776665433322 24579999987765443
No 101
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.60 E-value=0.0021 Score=64.92 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=35.5
Q ss_pred CCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeC-CCCCccCCCCCcccccCCChhhhccccE
Q 002353 600 RGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAAN-PVGGRYDSSKTFSENVELTDPIISRFDV 678 (932)
Q Consensus 600 ~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaN-p~~Gry~~~~~~~~ni~L~~~LLsRFDl 678 (932)
..+++|||+..++++....|...++.+. .||.+.. .. | ....| ...+.|+++-|.
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~~~~----------------~Vi~~Gl~~~---f-~~~~f----~~~~~ll~~ad~ 132 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLDRGI----------------DVFCAGLDLT---H-KQNPF----ETTALLLSLADT 132 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHHTTC----------------EEEEEEESBC---T-TSCBC----HHHHHHHHHCSE
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHCCC----------------CEEEEeeccc---c-ccCCc----cchHHHHHHhhh
Confidence 4599999999997665555555555421 2333222 11 1 01112 566789999998
Q ss_pred EEEe
Q 002353 679 LCVV 682 (932)
Q Consensus 679 i~~l 682 (932)
+.-+
T Consensus 133 v~~l 136 (184)
T 2orw_A 133 VIKK 136 (184)
T ss_dssp EEEC
T ss_pred eEEe
Confidence 8876
No 102
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.56 E-value=0.0077 Score=65.59 Aligned_cols=49 Identities=22% Similarity=0.225 Sum_probs=36.0
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
+.++|.+.....+.-++-.+ . .++|+|++|+|||.|++.+.+..+ .+|.
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--------~------~v~i~G~~G~GKT~Ll~~~~~~~~-~~~~ 60 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--------P------LTLLLGIRRVGKSSLLRAFLNERP-GILI 60 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--------S------EEEEECCTTSSHHHHHHHHHHHSS-EEEE
T ss_pred HhcCChHHHHHHHHHHHhcC--------C------eEEEECCCcCCHHHHHHHHHHHcC-cEEE
Confidence 34678877666665554432 1 899999999999999999988764 4444
No 103
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.67 E-value=0.0035 Score=63.03 Aligned_cols=24 Identities=21% Similarity=0.537 Sum_probs=22.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
++.|+|++|+|||+|++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998864
No 104
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.53 E-value=0.012 Score=67.87 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
++||.|+||||||+++..+...+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999887654
No 105
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.23 E-value=0.032 Score=66.74 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=27.2
Q ss_pred hHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHh
Q 002353 507 HEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 507 ~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.+.-+.|+..++-++ .+++.|+||||||+++.++...
T Consensus 151 ~~~Q~~Ai~~~l~~~---------------~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 151 INWQKVAAAVALTRR---------------ISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp CCHHHHHHHHHHTBS---------------EEEEECCTTSTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCC---------------CEEEEeCCCCCHHHHHHHHHHH
Confidence 344566666666443 8999999999999988776544
No 106
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.22 E-value=0.017 Score=60.38 Aligned_cols=141 Identities=20% Similarity=0.228 Sum_probs=70.5
Q ss_pred cCCceEEEeCCCCchHHHHHHHHHHhC---CCcEE-e--cCCCc-ccccccceeecCc-----ccchhhhccCcee---c
Q 002353 533 RGDINVLLLGDPGTAKSQFLKYVEKTG---QRAVY-T--TGKGA-SAVGLTAAVHKDP-----VTREWTLEGGALV---L 597 (932)
Q Consensus 533 RgdinvLLvGdPGTGKS~Lak~va~~~---~r~v~-~--~g~~s-s~~gLta~v~kd~-----~~g~~~le~Gal~---l 597 (932)
||.++|++.|+||+|||+++-.++..+ ...+. . ..++. +...+.......+ ..+ ..+..+.+. .
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~-~~~~e~~l~~~L~ 82 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRG-MTLEEMDLDALLK 82 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETT-EEEEECCHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCC-cccccccHHHHHh
Confidence 677899999999999999976665442 22221 1 11111 1111211111100 000 000111111 1
Q ss_pred cCCCeeeeccccccCcc--hhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCc-cCCC----CCcccccCCCh
Q 002353 598 ADRGICLIDEFDKMNDQ--DRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGR-YDSS----KTFSENVELTD 670 (932)
Q Consensus 598 Ad~GIl~IDE~dkm~~~--~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gr-y~~~----~~~~~ni~L~~ 670 (932)
..-.+++|||+...+.. ....+++-++. .+++.+.+|+|+|-..+. .+.. -.....-.++.
T Consensus 83 ~~pdlvIVDElG~~~~~~~r~~~~~qDV~~------------~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd 150 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSRHTKRWQDIQE------------LLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPD 150 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCSSSBHHHHHHH------------HHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCH
T ss_pred cCCCEEEEeCCCCCCcccchhHHHHHHHHH------------HHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCcc
Confidence 23479999999975332 11223333321 245667889999954321 0000 00111236789
Q ss_pred hhhccccEEEEecCCCC
Q 002353 671 PIISRFDVLCVVKDVVD 687 (932)
Q Consensus 671 ~LLsRFDli~~l~D~~d 687 (932)
.++.+-|-+.++ |.+.
T Consensus 151 ~~~~~a~~v~lv-D~~p 166 (228)
T 2r8r_A 151 WVLQEAFDLVLI-DLPP 166 (228)
T ss_dssp HHHHTCSEEEEB-CCCH
T ss_pred HHHhhCCeEEEe-cCCH
Confidence 999999887776 5543
No 107
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.20 E-value=0.013 Score=69.60 Aligned_cols=23 Identities=43% Similarity=0.505 Sum_probs=20.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.++|.|+||||||+++..+...+
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999887753
No 108
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.14 E-value=0.01 Score=65.29 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=19.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
.+||+|+||+|||+|+..++..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4799999999999999998875
No 109
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.47 E-value=0.025 Score=55.64 Aligned_cols=28 Identities=14% Similarity=0.238 Sum_probs=24.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
.|+|+|+||+|||++++.+++.++..++
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~~~ 32 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEPWL 32 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 6999999999999999999998865543
No 110
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.04 E-value=0.033 Score=54.51 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
.|.|+|+||+|||++++.++...+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999998654
No 111
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.90 E-value=0.031 Score=55.33 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=24.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
+|+|+|+||+|||++++.+++.+...++
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l~~~~i 34 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLTKRILY 34 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 7999999999999999999987655444
No 112
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.65 E-value=0.039 Score=53.92 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=25.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
+|+|+|.||+|||++++.+++.+...++.
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 89999999999999999999976555543
No 113
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.60 E-value=0.036 Score=54.58 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=23.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
+|+|+|+||+|||++++.+++.++..++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~ 33 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFL 33 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 6999999999999999999987654433
No 114
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.58 E-value=0.043 Score=53.31 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=23.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAV 563 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v 563 (932)
.|+|+|+||+|||++++.+++..+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~ 29 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPI 29 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCee
Confidence 689999999999999999998765443
No 115
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.54 E-value=0.041 Score=56.11 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=24.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
+|+|+|+||+|||++++.+++..+..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 30 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIS 30 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 68999999999999999998876554443
No 116
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.45 E-value=0.042 Score=55.53 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=24.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
.|+|+|+||+|||++++.+++.+...++
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l~~~~i 54 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKLNVPFI 54 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 7999999999999999999988754443
No 117
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.41 E-value=0.052 Score=54.16 Aligned_cols=22 Identities=32% Similarity=0.684 Sum_probs=21.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
+|+|+|+||+|||++++.+++.
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999997
No 118
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.32 E-value=0.036 Score=54.76 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=24.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
+|+|+|+||+|||++++.+++.++..++
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~~~~~~ 40 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKSGLKYI 40 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCeEE
Confidence 7999999999999999999987654443
No 119
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.24 E-value=0.044 Score=52.99 Aligned_cols=27 Identities=37% Similarity=0.580 Sum_probs=22.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
.|+|+|+||+|||++++.+ +..+..++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i 29 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVI 29 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEE
Confidence 6899999999999999999 65544443
No 120
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.22 E-value=0.082 Score=55.66 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=22.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.++|+|+||+|||++++.+++..+
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998875
No 121
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.05 E-value=0.096 Score=56.47 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=22.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.++|+|+||+|||++++.+++..+
T Consensus 35 livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999998764
No 122
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.00 E-value=0.21 Score=52.01 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=20.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
+++++|++|+|||.++-.+....
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 69999999999999998777665
No 123
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.92 E-value=0.049 Score=53.29 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=20.0
Q ss_pred eEEEeCCCCchHHHHHHHHHH
Q 002353 537 NVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~ 557 (932)
.|+|+|+||+|||++++.+++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999998
No 124
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.90 E-value=0.071 Score=53.70 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=24.2
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
..|+|+|+||+|||++++.+++..+..++
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 49 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQI 49 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 37999999999999999999987654443
No 125
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.87 E-value=0.049 Score=55.41 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=23.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
+|+|+|+||+|||++++.+++..+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i 29 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHI 29 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEe
Confidence 6899999999999999999876554444
No 126
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.77 E-value=0.059 Score=53.35 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=23.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
.|+|+|.||+|||++++.+++.++..++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 31 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLL 31 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 5999999999999999999987654444
No 127
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=92.60 E-value=0.062 Score=48.87 Aligned_cols=32 Identities=28% Similarity=0.608 Sum_probs=23.4
Q ss_pred eeEEEEEcCCCCCccccccccCcccccCCCCCCCCCCC
Q 002353 341 LQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSKG 378 (932)
Q Consensus 341 l~~~~f~C~~C~~~~~~~~q~~~~~~~p~~C~~C~s~~ 378 (932)
|...-|.|.+||+++ .. ...+|..||.|+|.+
T Consensus 63 L~v~p~~C~~CG~~F----~~--~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 63 LLIKPAQCRKCGFVF----KA--EINIPSRCPKCKSEW 94 (105)
T ss_dssp EEECCCBBTTTCCBC----CC--CSSCCSSCSSSCCCC
T ss_pred EEEECcChhhCcCee----cc--cCCCCCCCcCCCCCc
Confidence 444569999999984 22 234689999999864
No 128
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.53 E-value=0.054 Score=53.59 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA 562 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~ 562 (932)
.|+|+|+||+|||++++.+++.....
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~ 31 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFK 31 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 79999999999999999999765433
No 129
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.50 E-value=0.07 Score=53.09 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.+.|+|++|+|||++++.++....
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 578999999999999999987543
No 130
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.45 E-value=0.069 Score=52.05 Aligned_cols=28 Identities=7% Similarity=0.163 Sum_probs=23.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
.|+|+|.||+|||++++.+++.++..++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 31 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFV 31 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 6899999999999999999987654443
No 131
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.41 E-value=0.085 Score=52.91 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=22.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+|++|+|||++++.++...|
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 578999999999999999999876
No 132
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.41 E-value=0.19 Score=52.33 Aligned_cols=22 Identities=14% Similarity=-0.081 Sum_probs=17.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
-++++|+||+|||++|..++..
T Consensus 14 i~litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4788999999999977655543
No 133
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.41 E-value=0.064 Score=54.92 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=24.3
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
..|+|+|+||+|||++++.+++.+...++
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i 33 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHL 33 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEE
Confidence 37999999999999999999987654433
No 134
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.39 E-value=0.067 Score=52.64 Aligned_cols=28 Identities=11% Similarity=0.092 Sum_probs=20.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
.|+|+|.||+|||++++.+++.+...++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 6999999999999999999988765544
No 135
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.28 E-value=0.071 Score=52.87 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=22.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
.|+|+|+||+|||++++.+++.+..
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 7999999999999999999986543
No 136
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.23 E-value=0.08 Score=53.36 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=22.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
.|+|+|+||+|||++++.+++..+.
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999987643
No 137
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.16 E-value=0.084 Score=51.24 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=23.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
.|+|+|.||+|||++++.+++.++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i 29 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFY 29 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 6899999999999999999987654443
No 138
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.12 E-value=0.066 Score=52.99 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAV 563 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v 563 (932)
.|+|+|.||+|||++++.+++..+..+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~~~~ 31 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYGYTH 31 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 699999999999999999988654433
No 139
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.11 E-value=0.067 Score=54.96 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=24.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
.|+|+||||+||++.++.+++...-....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 58999999999999999999986544433
No 140
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.03 E-value=0.086 Score=55.69 Aligned_cols=28 Identities=14% Similarity=0.162 Sum_probs=23.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
.++|+|+||+|||++++.+++..+..++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i 30 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVV 30 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEE
Confidence 5789999999999999999987654443
No 141
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.98 E-value=0.084 Score=51.74 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.++|+|+||+|||++++.++....
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhC
Confidence 689999999999999999998753
No 142
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.97 E-value=0.058 Score=53.29 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=21.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.|+|+|+||+|||++++.+++.++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999998654
No 143
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.89 E-value=0.074 Score=54.36 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=24.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
.|.|+|+||+|||++++.+++..+-.+..
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 79999999999999999999876544443
No 144
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.83 E-value=0.068 Score=53.15 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=24.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
.|+|+|+||+|||++++.+++.++..++
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l~~~~i 38 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKYGYTHL 38 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 7999999999999999999987655444
No 145
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.67 E-value=0.077 Score=54.11 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=23.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
+|+|+|+||+|||++++.+++..+..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~ 30 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS 30 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 68999999999999999999866544433
No 146
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.65 E-value=0.091 Score=53.01 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.+.|+|+||+|||++++.++...+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 689999999999999999998763
No 147
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.65 E-value=0.074 Score=52.80 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+|+||+|||++++.++...
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999998763
No 148
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.65 E-value=0.091 Score=54.10 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=24.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
.|+|+|+||+|||++++.+++.....++
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l~~~~i 36 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHFELKHL 36 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 7999999999999999999987654443
No 149
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.62 E-value=0.074 Score=53.02 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=23.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
.|+|+|+||+|||++++.+++.++..++
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i 41 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYGFTHL 41 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 7999999999999999999987654433
No 150
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.58 E-value=0.083 Score=54.73 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=24.5
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
.+|+|+|+||+|||++++.+++.+...++
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i 45 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHL 45 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 38999999999999999999987654443
No 151
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.51 E-value=0.083 Score=52.18 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.|+|+|+||+|||++++.+++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998754
No 152
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.48 E-value=0.1 Score=51.80 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=22.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+||+|+|||+|++.+....+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 688999999999999999998865
No 153
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.40 E-value=0.12 Score=56.84 Aligned_cols=79 Identities=11% Similarity=0.073 Sum_probs=50.0
Q ss_pred cccCHHHHHHHHHHhcC------hhhHHHHHHhhcccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCc
Q 002353 473 YKLTQEDKEEIEKLAKD------PRIGERIIKSIAPSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGT 546 (932)
Q Consensus 473 ~~lt~~d~~~i~~l~~~------~~i~~~l~~siap~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGT 546 (932)
..+|+++++.++.+... .++|--|++.+.-. ||....-..+...+.++.. .....-+.|.|++|+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~v~~~y~pl~rll~~~-~~~~~~l~~~~~~~l~~~~--------~~~p~iigI~GpsGS 103 (321)
T 3tqc_A 33 LTLTESDLDKLQGQIEIVSLKEVTEIYLPLSRLLSFY-VTARQTLQQATYQFLGKPE--------PKVPYIIGIAGSVAV 103 (321)
T ss_dssp CCCCHHHHHHTTTTHHHHCHHHHHHTHHHHHHHHHHH-HHHHHHHHHHHHHHHTCCC--------CCCCEEEEEECCTTS
T ss_pred CCCCHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHhccCC--------CCCCEEEEEECCCCC
Confidence 45899998887654322 24565555544332 3444444445555555421 112336899999999
Q ss_pred hHHHHHHHHHHhCC
Q 002353 547 AKSQFLKYVEKTGQ 560 (932)
Q Consensus 547 GKS~Lak~va~~~~ 560 (932)
|||++++.+..+..
T Consensus 104 GKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 104 GKSTTSRVLKALLS 117 (321)
T ss_dssp SHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998864
No 154
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.40 E-value=0.098 Score=54.82 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=24.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
.|+|+|+||+|||++++.+++..+...+.
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~g~~~is 59 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSHCYCHLS 59 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 79999999999999999998866544443
No 155
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.28 E-value=0.15 Score=49.97 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=22.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+||.|+|||+|++.++...|
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 688999999999999999999874
No 156
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.23 E-value=0.11 Score=52.18 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=23.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
.|+|+|+||+|||++++.+++..+..++
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g~~~i 44 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYSFVHL 44 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEE
Confidence 6999999999999999999987654443
No 157
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.20 E-value=0.1 Score=51.56 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=23.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
.|+|+|+||+|||++++.+++..+..++
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~~~~i 35 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFGWVHL 35 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 6999999999999999999987654333
No 158
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.19 E-value=0.13 Score=52.09 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=22.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.++|+|+||+|||++++.+++..+
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCc
Confidence 689999999999999999998875
No 159
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.17 E-value=0.11 Score=51.70 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
.|.|+|.||+|||++++.+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5899999999999999999987654
No 160
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.15 E-value=0.091 Score=53.80 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=24.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
.|+|+|+||+|||++++.+++.+...++
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~~i 34 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLAHL 34 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCceEE
Confidence 7999999999999999999987654444
No 161
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.04 E-value=0.092 Score=54.43 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=22.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA 562 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~ 562 (932)
-|+|+|+||+||++.++.+++...-.
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 57889999999999999999876543
No 162
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.95 E-value=0.11 Score=53.66 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=23.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
.|+|+|+||+|||++++.+++..+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 29 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHI 29 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 5899999999999999999987654333
No 163
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.77 E-value=0.19 Score=55.97 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=21.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.++|+|++|+|||++++.+....+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhccc
Confidence 799999999999999999987653
No 164
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.71 E-value=0.17 Score=51.05 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAV 563 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v 563 (932)
+|.|+||+|+|||+|++.+.+..|..+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 689999999999999999988776544
No 165
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.71 E-value=0.1 Score=54.47 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=21.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+|+||+|||++++.+++..
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999654
No 166
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.57 E-value=0.09 Score=53.88 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
.|+|+|+||+|||++++.+++.+..
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 7999999999999999999987654
No 167
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.54 E-value=0.12 Score=51.96 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=21.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.|+|+|+||+|||++++.+++.++
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 699999999999999999998654
No 168
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=90.49 E-value=0.13 Score=51.84 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.|.|+|++|+|||++++.++..++
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998763
No 169
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.40 E-value=0.14 Score=54.12 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=24.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
.|.|+|++|+|||++++.+++.+...++.
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 79999999999999999999976554443
No 170
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.36 E-value=0.17 Score=48.55 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=21.6
Q ss_pred cCCceEEEeCCCCchHHHHHHHHHH
Q 002353 533 RGDINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 533 RgdinvLLvGdPGTGKS~Lak~va~ 557 (932)
+..++|+++|++|+|||+|+..+..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456999999999999999998864
No 171
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.28 E-value=0.086 Score=60.35 Aligned_cols=85 Identities=15% Similarity=0.038 Sum_probs=43.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEecCCCcccccccceeecC---c------cc-chhhhccCceeccCCCeeeec
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKD---P------VT-REWTLEGGALVLADRGICLID 606 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~g~~ss~~gLta~v~kd---~------~~-g~~~le~Gal~lAd~GIl~ID 606 (932)
-.++.|.||+|||++++.+... .+..+.+........+...+.+. . .| ..|.+.++........+++||
T Consensus 163 v~~I~G~aGsGKTt~I~~~~~~-~~~lVlTpT~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~~d~liiD 241 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRVNF-EEDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQFKRLFID 241 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHCCT-TTCEEEESCHHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCCCSEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHhcc-CCeEEEeCCHHHHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCcCCEEEEe
Confidence 5689999999999999876643 22233332222222221111100 0 00 011122222111225699999
Q ss_pred cccccCcchhhhHHHH
Q 002353 607 EFDKMNDQDRVSIHEA 622 (932)
Q Consensus 607 E~dkm~~~~~~~L~ea 622 (932)
|+..++......++.+
T Consensus 242 E~sm~~~~~l~~l~~~ 257 (446)
T 3vkw_A 242 EGLMLHTGCVNFLVEM 257 (446)
T ss_dssp TGGGSCHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHh
Confidence 9999887655555443
No 172
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.24 E-value=0.14 Score=52.09 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
-+.|+||+|+|||++++.++...+.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCC
Confidence 5889999999999999999988753
No 173
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.24 E-value=0.18 Score=49.53 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=22.5
Q ss_pred cCCceEEEeCCCCchHHHHHHHHHHh
Q 002353 533 RGDINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 533 RgdinvLLvGdPGTGKS~Lak~va~~ 558 (932)
+..+.|+++|++|+|||+|+..+...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34569999999999999999998764
No 174
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.20 E-value=0.17 Score=50.86 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
.|.|+|++|+|||++++.+++ ...
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~ 26 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGA 26 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTC
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCC
Confidence 689999999999999999999 543
No 175
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=89.92 E-value=0.18 Score=50.53 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=21.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+|++|+|||++++.++...
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 68999999999999999999876
No 176
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.86 E-value=0.22 Score=50.60 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-+.|+|++|+|||+|++.++...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998753
No 177
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.78 E-value=0.16 Score=53.25 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=25.2
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
+.+.|.|+||+|||++++.+++.+.-.++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 489999999999999999999876544443
No 178
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.74 E-value=0.19 Score=49.68 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=21.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.|.|+|.||+|||++++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999865
No 179
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.60 E-value=0.19 Score=49.33 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=21.9
Q ss_pred CceEEEeCCCCchHHHHHHHHHHhC
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+|+|+||+|||.|++++....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 4589999999999999999887654
No 180
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.56 E-value=0.18 Score=48.03 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.6
Q ss_pred CceEEEeCCCCchHHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~ 557 (932)
.++|+++|++|+|||+|++.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 35899999999999999998875
No 181
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=89.53 E-value=0.26 Score=53.38 Aligned_cols=42 Identities=21% Similarity=0.130 Sum_probs=31.6
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHHhC
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~~~ 559 (932)
+.++|.+.....+.- +-.+ .++|+|++|+|||.|++.+++..
T Consensus 13 ~~~~gR~~el~~L~~-l~~~---------------~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRAP---------------ITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCSS---------------EEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcCC---------------cEEEECCCCCCHHHHHHHHHHhc
Confidence 456787776665554 3221 89999999999999999888764
No 182
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.52 E-value=0.2 Score=49.79 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-|.|.|+||+|||++++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999875
No 183
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=89.45 E-value=0.17 Score=48.41 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=19.3
Q ss_pred ceEEEeCCCCchHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va 556 (932)
+.|+++|+||+|||+|++.+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999875
No 184
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.44 E-value=0.19 Score=47.62 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.0
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
++|+++|+||+|||+|+..+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999988775
No 185
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=89.35 E-value=0.19 Score=50.08 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
-+.|+||+|+|||++++.+....+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCc
Confidence 4789999999999999999998763
No 186
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.24 E-value=0.24 Score=52.32 Aligned_cols=22 Identities=41% Similarity=0.597 Sum_probs=20.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
.|+|+|.||+|||++++.+++.
T Consensus 6 lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999986
No 187
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.24 E-value=0.21 Score=50.29 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=19.8
Q ss_pred eEEEeCCCCchHHHHHHHHHH
Q 002353 537 NVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~ 557 (932)
.|.|+|++|+|||++++.++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999987
No 188
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.21 E-value=0.2 Score=47.79 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.7
Q ss_pred ceEEEeCCCCchHHHHHHHHHHh
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~ 558 (932)
++|+++|++|+|||+|++.+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 58999999999999999988654
No 189
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.19 E-value=0.18 Score=50.53 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=25.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEec
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTT 566 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~ 566 (932)
.|.|.|++|+|||++++.+++.++..++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 689999999999999999999766555543
No 190
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.14 E-value=0.2 Score=52.63 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=25.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEec
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTT 566 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~ 566 (932)
.|.|+|++|+|||++++.+++.+....+.+
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~ 58 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLLDS 58 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcCCC
Confidence 799999999999999999998776554443
No 191
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.09 E-value=0.21 Score=47.64 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.4
Q ss_pred ceEEEeCCCCchHHHHHHHHHHh
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~ 558 (932)
++|+++|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988653
No 192
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.04 E-value=0.2 Score=56.25 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=21.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.++|+|+||+|||+|++.++....
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 799999999999999999998643
No 193
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.03 E-value=0.21 Score=47.76 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.0
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.++|+++|++|+|||+|++.+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 358999999999999999988754
No 194
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.94 E-value=0.22 Score=47.31 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.5
Q ss_pred ceEEEeCCCCchHHHHHHHHHHh
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~ 558 (932)
++|+++|++|+|||+|++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999988753
No 195
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.89 E-value=0.21 Score=48.06 Aligned_cols=22 Identities=36% Similarity=0.661 Sum_probs=19.7
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
+.|+|+|+||+|||+|++.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4899999999999999998763
No 196
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.85 E-value=0.24 Score=50.89 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=20.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
-++|+|+||+|||+|++.++..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 6899999999999999999874
No 197
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.83 E-value=0.22 Score=47.36 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.2
Q ss_pred ceEEEeCCCCchHHHHHHHHHHh
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~ 558 (932)
++|+++|++|+|||.|+..+..-
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 37999999999999999988653
No 198
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=88.81 E-value=0.22 Score=48.15 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=21.4
Q ss_pred CCceEEEeCCCCchHHHHHHHHHHh
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~~ 558 (932)
..++|+++|++|+|||+|++.+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3469999999999999999888653
No 199
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=88.81 E-value=0.19 Score=50.65 Aligned_cols=23 Identities=17% Similarity=0.040 Sum_probs=21.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.|.|+|.||+|||++++.+++.+
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999864
No 200
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=88.77 E-value=0.28 Score=50.00 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=22.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
-+.|+||+|+|||+|++.+.+..+.
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~~ 45 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNPE 45 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCc
Confidence 5789999999999999999988763
No 201
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.74 E-value=0.21 Score=47.66 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=20.0
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
++|+++|++|+|||+|++.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999998864
No 202
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=88.74 E-value=0.21 Score=47.75 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.5
Q ss_pred ceEEEeCCCCchHHHHHHHHHHh
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~ 558 (932)
++|+++|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 58999999999999999988753
No 203
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=88.73 E-value=0.23 Score=47.96 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.0
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.++|+++|++|+|||+|++.+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999999988753
No 204
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.70 E-value=0.23 Score=47.26 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.2
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
++|+++|++|+|||+|++.+..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999998875
No 205
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=88.65 E-value=0.27 Score=48.66 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.1
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCC
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~ 560 (932)
..++|+|.||+|||++++.++..+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999988753
No 206
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.65 E-value=0.26 Score=49.21 Aligned_cols=23 Identities=9% Similarity=0.017 Sum_probs=21.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.|.|+|+||+|||++++.+++.+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999976
No 207
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.62 E-value=0.2 Score=50.61 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=22.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.+.|+||+|+|||+|++.+....+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 689999999999999999998765
No 208
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=88.57 E-value=0.24 Score=47.23 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.5
Q ss_pred CceEEEeCCCCchHHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~ 557 (932)
.++|+++|++|+|||+|++.+..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999998875
No 209
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=88.54 E-value=0.23 Score=48.46 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.2
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.++|+|+|++|+|||+|++.+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 369999999999999999988753
No 210
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.51 E-value=0.23 Score=49.54 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=21.5
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhC
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~ 559 (932)
+.|+|+|++|+|||+|++.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 489999999999999999998753
No 211
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.51 E-value=0.2 Score=47.86 Aligned_cols=21 Identities=43% Similarity=0.695 Sum_probs=18.9
Q ss_pred ceEEEeCCCCchHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va 556 (932)
+.|+|+|+||+|||+|++.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 489999999999999998774
No 212
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.48 E-value=0.36 Score=63.69 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=20.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+||+||||||||+||++++..+
T Consensus 1084 ~~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A 1084 IVEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHh
Confidence 49999999999999999887643
No 213
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=88.43 E-value=0.21 Score=50.69 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=22.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-|.|+|++|+|||+|++.++...+
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 789999999999999999998864
No 214
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.43 E-value=0.22 Score=46.99 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.5
Q ss_pred ceEEEeCCCCchHHHHHHHHHHh
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~ 558 (932)
++|+++|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 48999999999999999988753
No 215
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=88.36 E-value=0.19 Score=49.52 Aligned_cols=19 Identities=42% Similarity=0.621 Sum_probs=17.2
Q ss_pred eEEEeCCCCchHHHHHHHH
Q 002353 537 NVLLLGDPGTAKSQFLKYV 555 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~v 555 (932)
-+.|+|++|+|||+|++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999973
No 216
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=88.34 E-value=0.29 Score=49.62 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=22.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+||+|+|||+|++.++.+.+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 578999999999999999999886
No 217
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=88.31 E-value=0.46 Score=49.07 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.8
Q ss_pred CCceEEEeCCCCchHHHHHHHHHHh
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~~ 558 (932)
..++|+|+|++|+|||+|++.+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 3469999999999999999988754
No 218
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.29 E-value=0.26 Score=46.66 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=20.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
.|+++|++|+|||+|++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999988764
No 219
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.26 E-value=0.25 Score=47.57 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.3
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.++|+++|++|+|||+|++.+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999998754
No 220
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.24 E-value=0.24 Score=50.23 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
.++|+|+||+|||+|++.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6889999999999999998854
No 221
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.22 E-value=0.27 Score=49.59 Aligned_cols=25 Identities=12% Similarity=0.375 Sum_probs=22.0
Q ss_pred CceEEEeCCCCchHHHHHHHHHHhC
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.++|+|+|++|+|||+|+..+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4599999999999999999988653
No 222
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.19 E-value=0.22 Score=51.26 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=18.6
Q ss_pred eEEEeCCCCchHHHHHHHHH
Q 002353 537 NVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va 556 (932)
-++|+||+|+|||+|++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 58889999999999999887
No 223
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.19 E-value=0.32 Score=48.46 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=23.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
.|.|+|++|+|||++++.+++. ...++
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~-g~~~i 36 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW-GYPVL 36 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT-TCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHC-CCEEE
Confidence 7999999999999999999987 43333
No 224
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.17 E-value=0.21 Score=53.31 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=22.1
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhC
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~ 559 (932)
.++.|+|++|+|||+|++.+....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999874
No 225
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.09 E-value=0.22 Score=50.14 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=21.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.|.|+|.||+|||++++.+++.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999864
No 226
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.01 E-value=0.3 Score=53.69 Aligned_cols=28 Identities=11% Similarity=0.230 Sum_probs=24.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
.|+|+|+||+|||++++.+++..+..++
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~~ii 34 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCELI 34 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 6899999999999999999998764444
No 227
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.00 E-value=0.3 Score=48.12 Aligned_cols=25 Identities=12% Similarity=0.375 Sum_probs=21.7
Q ss_pred CceEEEeCCCCchHHHHHHHHHHhC
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+++|++|+|||+|+..+....
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999987643
No 228
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.99 E-value=0.26 Score=47.63 Aligned_cols=23 Identities=17% Similarity=0.496 Sum_probs=20.4
Q ss_pred CceEEEeCCCCchHHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~ 557 (932)
.++|+++|+||+|||+|++.+..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHG
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999998864
No 229
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=87.87 E-value=0.28 Score=50.37 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=22.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+||+|+|||+|++.++...|
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 688999999999999999999875
No 230
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=87.83 E-value=0.27 Score=48.44 Aligned_cols=24 Identities=25% Similarity=0.564 Sum_probs=21.2
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.++|+|+|++|+|||+|++.+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 368999999999999999988753
No 231
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=87.78 E-value=0.25 Score=47.64 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.5
Q ss_pred CceEEEeCCCCchHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va 556 (932)
.++|+++|++|+|||+|++.+.
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 3589999999999999998774
No 232
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=87.76 E-value=0.29 Score=50.60 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=22.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+||+|+|||+|++.+....+
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 578999999999999999999876
No 233
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=87.74 E-value=0.19 Score=41.38 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=41.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHhcCcc
Q 002353 846 KKEYNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQELEIY 900 (932)
Q Consensus 846 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~i~ 900 (932)
.....+.+..+.+.++.+++...+.+.. .++..++|+...|.++++++||.
T Consensus 9 ~~~l~~~l~~~E~~~i~~aL~~~~gn~~----~aA~~LGisr~tL~rklkk~gi~ 59 (63)
T 3e7l_A 9 IKELKEAKKEFEKIFIEEKLREYDYDLK----RTAEEIGIDLSNLYRKIKSLNIR 59 (63)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTTTCHH----HHHHHHTCCHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHHHCcCHHHHHHHHHHhCCC
Confidence 3445566778899999999987665444 67789999999999999999985
No 234
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.73 E-value=0.29 Score=48.33 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.5
Q ss_pred CCceEEEeCCCCchHHHHHHHHHH
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~ 557 (932)
..++|+++|++|+|||+|++.+..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 456999999999999999999876
No 235
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.71 E-value=0.26 Score=48.51 Aligned_cols=22 Identities=23% Similarity=0.659 Sum_probs=19.7
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
+.|+|+|+||+|||+|++.+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998764
No 236
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.62 E-value=0.27 Score=49.63 Aligned_cols=21 Identities=10% Similarity=0.023 Sum_probs=19.6
Q ss_pred eEEEeCCCCchHHHHHHHHHH
Q 002353 537 NVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~ 557 (932)
-++|+|+||+|||+|++.++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 237
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.52 E-value=0.3 Score=47.27 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.5
Q ss_pred CCceEEEeCCCCchHHHHHHHHHHh
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~~ 558 (932)
..++|+++|++|+|||+|+..+...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3469999999999999999988753
No 238
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=87.50 E-value=0.3 Score=47.29 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=20.9
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.++|+++|++|+|||+|++.+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 358999999999999999988753
No 239
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=87.49 E-value=0.3 Score=48.06 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=21.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.|.|+|.+|+|||++++.++..+
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999864
No 240
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.46 E-value=0.37 Score=51.51 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.|+|+|+||+|||++++.+++..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 68999999999999999999853
No 241
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=87.44 E-value=0.28 Score=47.32 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=21.1
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.++|+++|++|+|||+|++.+...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 358999999999999999988754
No 242
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=87.43 E-value=0.34 Score=48.79 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=21.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.|.|+|+||+|||++++.+++..+
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTST
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 689999999999999999998763
No 243
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=87.37 E-value=0.3 Score=51.10 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.0
Q ss_pred CCceEEEeCCCCchHHHHHHHHHH
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~ 557 (932)
..++|+|+|+||+|||+|+..+..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHhC
Confidence 346999999999999999998874
No 244
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=87.33 E-value=0.31 Score=47.44 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.6
Q ss_pred ceEEEeCCCCchHHHHHHHHHHh
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~ 558 (932)
++|+++|++|+|||+|+..+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999998753
No 245
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=87.33 E-value=0.28 Score=47.20 Aligned_cols=22 Identities=14% Similarity=0.386 Sum_probs=20.2
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
++|+++|++|+|||+|++.+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999998874
No 246
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=87.33 E-value=0.31 Score=47.47 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.6
Q ss_pred CceEEEeCCCCchHHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~ 557 (932)
.++|+|+|++|+|||+|++.+..
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999998874
No 247
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=87.28 E-value=0.27 Score=47.66 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=20.2
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
+.|+++|++|+|||.|++.+..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999998875
No 248
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=87.21 E-value=0.35 Score=49.09 Aligned_cols=30 Identities=27% Similarity=0.192 Sum_probs=25.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEec
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTT 566 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~ 566 (932)
.|.|+|+||+|||++++.+++..+-.++..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 699999999999999999999876555543
No 249
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.20 E-value=0.39 Score=52.33 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=21.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+||+|+|||+|++.+..+.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 78999999999999999999886
No 250
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.20 E-value=0.35 Score=46.64 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=20.8
Q ss_pred CCceEEEeCCCCchHHHHHHHHHH
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~ 557 (932)
..+.|+++|++|+|||+|++.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345899999999999999998864
No 251
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.19 E-value=0.3 Score=47.10 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=19.8
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
+.|.|+|+||+|||+|++.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3799999999999999998864
No 252
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=87.11 E-value=0.32 Score=47.20 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=20.0
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
++|+++|++|+|||+|++.+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999988865
No 253
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=87.10 E-value=0.28 Score=49.45 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=21.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+|++|+|||+|++.++...+
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 688999999999999999999754
No 254
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=86.98 E-value=0.37 Score=50.46 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=23.0
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r 561 (932)
..|.|.|+||+|||++++.+++.++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 47999999999999999999997643
No 255
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=86.94 E-value=0.3 Score=48.12 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=22.9
Q ss_pred ccCCceEEEeCCCCchHHHHHHHHHHh
Q 002353 532 LRGDINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 532 ~RgdinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.+..++|+|+|++|+|||+|++.+...
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcC
Confidence 344679999999999999999988753
No 256
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=86.90 E-value=0.31 Score=48.49 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=21.6
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhC
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~ 559 (932)
+.|.|+|++|+|||+|++.+....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 589999999999999999998754
No 257
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=86.83 E-value=0.34 Score=46.98 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.1
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.++|+++|++|+|||+|++.+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 368999999999999999988753
No 258
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=86.82 E-value=0.31 Score=47.80 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.0
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.+.|+++|++|+|||+|++.+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999988753
No 259
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.81 E-value=0.35 Score=47.90 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=21.2
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.++|+++|++|+|||+|++.+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 469999999999999999988763
No 260
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=86.80 E-value=0.36 Score=46.76 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.4
Q ss_pred CceEEEeCCCCchHHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~ 557 (932)
.+.|+++|++|+|||+|++.+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999988775
No 261
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=86.74 E-value=0.34 Score=47.51 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.1
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.+.|+++|++|+|||+|+..+...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 368999999999999999998753
No 262
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=86.74 E-value=0.32 Score=47.43 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=20.9
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.++|+++|++|+|||+|++.+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999999988653
No 263
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=86.73 E-value=0.33 Score=47.43 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=20.7
Q ss_pred CCceEEEeCCCCchHHHHHHHHHH
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~ 557 (932)
..++|+++|++|+|||+|++.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 346999999999999999988763
No 264
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=86.71 E-value=0.35 Score=47.76 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.5
Q ss_pred CceEEEeCCCCchHHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~ 557 (932)
.+.|+|+|++|+|||.|++.+..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHh
Confidence 46999999999999999988765
No 265
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=86.70 E-value=0.28 Score=47.86 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=19.6
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
++|+++|++|+|||+|+..+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3799999999999999998864
No 266
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.69 E-value=0.4 Score=49.16 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=20.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
-+.|+|++|+|||+|++.++.+
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999987
No 267
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=86.61 E-value=0.35 Score=47.54 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.0
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.++|+|+|++|+|||+|++.+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999988753
No 268
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=86.58 E-value=0.58 Score=52.02 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=23.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCc
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRA 562 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~ 562 (932)
+++|+|+||+|||++++.+++.+...
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~ 51 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEK 51 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 79999999999999999999876543
No 269
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=86.55 E-value=0.53 Score=52.11 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=21.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-++|+|+||+|||+|++.++...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998876
No 270
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=86.53 E-value=0.36 Score=47.72 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=21.6
Q ss_pred CCceEEEeCCCCchHHHHHHHHHHh
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~~ 558 (932)
..++|+|+|++|+|||.|++.+...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3469999999999999999988753
No 271
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=86.52 E-value=0.36 Score=47.66 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=20.6
Q ss_pred CCceEEEeCCCCchHHHHHHHHHH
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~ 557 (932)
..+.|+|+|++|+|||+|++.+..
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999976654
No 272
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=86.46 E-value=0.32 Score=48.50 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=22.0
Q ss_pred ccCCceEEEeCCCCchHHHHHHHHHHh
Q 002353 532 LRGDINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 532 ~RgdinvLLvGdPGTGKS~Lak~va~~ 558 (932)
....++|+|+|++|+|||+|++.+...
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 344579999999999999999988753
No 273
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=86.38 E-value=0.37 Score=47.82 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.4
Q ss_pred CCceEEEeCCCCchHHHHHHHHHHh
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~~ 558 (932)
..++|+|+|++|+|||+|+..+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3469999999999999999988753
No 274
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=86.37 E-value=0.33 Score=47.34 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.6
Q ss_pred ceEEEeCCCCchHHHHHHHHHHh
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~ 558 (932)
..|.|+|+||+|||+|++.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998753
No 275
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=86.36 E-value=0.37 Score=47.37 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.7
Q ss_pred CceEEEeCCCCchHHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~ 557 (932)
.++|+|+|++|+|||+|++.+..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 35899999999999999998875
No 276
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=86.35 E-value=0.38 Score=47.33 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=20.7
Q ss_pred CceEEEeCCCCchHHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~ 557 (932)
.++|+|+|++|+|||+|++.+..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 46999999999999999998865
No 277
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=86.31 E-value=0.36 Score=48.98 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=21.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.|+|+|.||+|||++++.+++.++
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999998764
No 278
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=86.31 E-value=0.42 Score=49.11 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=17.7
Q ss_pred eEEEeCCCCchHHHHHHHHH
Q 002353 537 NVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va 556 (932)
-++|.|+||+|||+|+-.++
T Consensus 32 l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 68999999999999987654
No 279
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=86.28 E-value=0.4 Score=48.50 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=24.0
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
..|.|+|.+|+|||++++.+++.....++
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vi 41 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVV 41 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEE
Confidence 36889999999999999999987544444
No 280
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=86.28 E-value=0.44 Score=48.40 Aligned_cols=26 Identities=27% Similarity=0.176 Sum_probs=22.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAV 563 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v 563 (932)
.|.|+|++|+|||++++.+++ ....+
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~~~ 31 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGINV 31 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEE
Confidence 799999999999999999998 44333
No 281
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=86.26 E-value=0.38 Score=47.83 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.1
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.++|+++|++|+|||+|++.+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 458999999999999999988754
No 282
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=86.24 E-value=0.38 Score=47.16 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=21.1
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.++|+|+|++|+|||+|++.+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 369999999999999999988653
No 283
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=86.22 E-value=0.69 Score=48.35 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=21.9
Q ss_pred cCCceEEEeCCCCchHHHHHHHHHHh
Q 002353 533 RGDINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 533 RgdinvLLvGdPGTGKS~Lak~va~~ 558 (932)
...++|+|+|.||+|||+|+..+...
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCC
Confidence 34579999999999999999988654
No 284
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=86.21 E-value=0.35 Score=47.82 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.2
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.++|+++|++|+|||+|++.+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 469999999999999999988753
No 285
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.15 E-value=0.37 Score=47.14 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=20.1
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
+.|+|+|++|+|||+|++.+..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999998874
No 286
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=86.11 E-value=0.52 Score=56.54 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=23.3
Q ss_pred hHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHH
Q 002353 507 HEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLK 553 (932)
Q Consensus 507 ~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak 553 (932)
++.-+.|+..+|.... -.||.||||||||+.+-
T Consensus 191 N~~Q~~AV~~al~~~~--------------~~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 191 DTSQKEAVLFALSQKE--------------LAIIHGPPGTGKTTTVV 223 (646)
T ss_dssp CHHHHHHHHHHHHCSS--------------EEEEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHHhcCCC--------------ceEEECCCCCCHHHHHH
Confidence 3455677777765321 57999999999997544
No 287
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=86.10 E-value=0.93 Score=46.11 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=18.9
Q ss_pred eEEEeCCCCchHH-HHHHHHHHh
Q 002353 537 NVLLLGDPGTAKS-QFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS-~Lak~va~~ 558 (932)
=.+++|+.|+||| .|++++.+.
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~ 44 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRF 44 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 3678999999999 899988775
No 288
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.08 E-value=0.37 Score=47.25 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.4
Q ss_pred CceEEEeCCCCchHHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~ 557 (932)
.++|+++|++|+|||+|++.+..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35999999999999999998874
No 289
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.03 E-value=0.35 Score=50.06 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=24.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEec
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYTT 566 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~~ 566 (932)
.|.|+|++|+|||++++.+++.++..++..
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 699999999999999999998665544443
No 290
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=86.01 E-value=0.4 Score=47.32 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=21.2
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.++|+|+|++|+|||+|++.+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 468999999999999999988753
No 291
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.98 E-value=0.41 Score=47.85 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=20.9
Q ss_pred cCCceEEEeCCCCchHHHHHHHHHH
Q 002353 533 RGDINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 533 RgdinvLLvGdPGTGKS~Lak~va~ 557 (932)
+..+.|+++|++|+|||+|+..+..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4456999999999999999998874
No 292
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.96 E-value=0.36 Score=47.60 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.2
Q ss_pred CCceEEEeCCCCchHHHHHHHHHHhC
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-.+.|+|+|++|+|||.|++.+....
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 34699999999999999999887643
No 293
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=85.96 E-value=0.36 Score=47.50 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.0
Q ss_pred CCceEEEeCCCCchHHHHHHHHHH
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~ 557 (932)
+.++|+++|++|+|||+|+..+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346999999999999999998864
No 294
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.91 E-value=0.27 Score=47.77 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.0
Q ss_pred CceEEEeCCCCchHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va 556 (932)
.++|+++|++|+|||+|+..+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 3599999999999999987653
No 295
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=85.91 E-value=0.35 Score=46.94 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=19.9
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
++|+|+|++|+|||+|+..+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 5899999999999999998874
No 296
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=85.85 E-value=0.38 Score=47.80 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=19.9
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
++|+|+|++|+|||+|+..+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999988764
No 297
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=85.82 E-value=0.41 Score=47.64 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=21.4
Q ss_pred cCCceEEEeCCCCchHHHHHHHHHHh
Q 002353 533 RGDINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 533 RgdinvLLvGdPGTGKS~Lak~va~~ 558 (932)
...++|+|+|++|+|||.|++.+...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34569999999999999999988754
No 298
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=85.81 E-value=0.29 Score=54.46 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=21.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.++|+|++|+|||+|++.+....+
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 899999999999999999987654
No 299
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=85.60 E-value=0.38 Score=47.98 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.5
Q ss_pred ceEEEeCCCCchHHHHHHHHHHh
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~ 558 (932)
++|+|+|++|+|||+|+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988653
No 300
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.57 E-value=0.47 Score=48.54 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.|+|+|+||+|||.|+..+++...
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 799999999999999999988765
No 301
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=85.52 E-value=0.31 Score=50.18 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=15.3
Q ss_pred eEEEeCCCCchHHHHHHHHH-HhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVE-KTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va-~~~~r 561 (932)
-+.|+|++|+|||++++.++ ...+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp EEEEECSCC----CHHHHHHC----C
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 57899999999999999999 87653
No 302
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=85.51 E-value=1.3 Score=45.13 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=38.4
Q ss_pred CCeeeecccccc---CcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccc
Q 002353 600 RGICLIDEFDKM---NDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRF 676 (932)
Q Consensus 600 ~GIl~IDE~dkm---~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRF 676 (932)
-.+++|||+..+ .--....+++++.+. +.+..||.|+|. -++.|+..-
T Consensus 121 yDlvILDEi~~al~~g~l~~~ev~~~l~~R-------------p~~~~vIlTGr~----------------ap~~l~e~A 171 (196)
T 1g5t_A 121 LDMVVLDELTYMVAYDYLPLEEVISALNAR-------------PGHQTVIITGRG----------------CHRDILDLA 171 (196)
T ss_dssp CSEEEEETHHHHHHTTSSCHHHHHHHHHTS-------------CTTCEEEEECSS----------------CCHHHHHHC
T ss_pred CCEEEEeCCCccccCCCCCHHHHHHHHHhC-------------cCCCEEEEECCC----------------CcHHHHHhC
Confidence 468999999653 222233466666533 456688999884 468899999
Q ss_pred cEEEEecC
Q 002353 677 DVLCVVKD 684 (932)
Q Consensus 677 Dli~~l~D 684 (932)
|++--++.
T Consensus 172 D~VTem~~ 179 (196)
T 1g5t_A 172 DTVSELRP 179 (196)
T ss_dssp SEEEECCC
T ss_pred cceeeecc
Confidence 99988743
No 303
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=85.46 E-value=0.39 Score=47.66 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=20.1
Q ss_pred CCceEEEeCCCCchHHHHHHHHH
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va 556 (932)
..+.|+++|++|+|||.|++.+.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHH
Confidence 35699999999999999998774
No 304
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=85.42 E-value=0.46 Score=52.44 Aligned_cols=29 Identities=24% Similarity=0.254 Sum_probs=25.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
.|+|+||+|+|||.|+..+++.++..+..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs 70 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVIN 70 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEc
Confidence 69999999999999999999988654443
No 305
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.41 E-value=0.44 Score=46.83 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=21.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-.+|+|+.|+|||+|+++|...+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 467999999999999999998764
No 306
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=85.38 E-value=0.45 Score=48.03 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=21.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+|++|+|||++++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58899999999999999998875
No 307
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=85.32 E-value=0.41 Score=46.99 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=20.1
Q ss_pred CceEEEeCCCCchHHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~ 557 (932)
.+.|+++|++|+|||+|++.+..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999988753
No 308
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=85.29 E-value=0.39 Score=49.30 Aligned_cols=21 Identities=43% Similarity=0.514 Sum_probs=17.9
Q ss_pred eEEEeCCCCchHHHHHHHHHH
Q 002353 537 NVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~ 557 (932)
-++|+|+||+|||+|+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999776644
No 309
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=85.22 E-value=0.28 Score=47.77 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=10.4
Q ss_pred ceEEEeCCCCchHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va 556 (932)
++|+|+|++|+|||+|+..+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~ 29 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFS 29 (183)
T ss_dssp EEEEEECCCCC----------
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999998765
No 310
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=85.15 E-value=0.41 Score=47.39 Aligned_cols=22 Identities=18% Similarity=0.579 Sum_probs=19.7
Q ss_pred CceEEEeCCCCchHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va 556 (932)
.++|+++|++|+|||+|++.+.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~ 47 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFT 47 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 3589999999999999998874
No 311
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=85.04 E-value=0.43 Score=47.29 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.1
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
+.|+++|+||+|||+|++.+..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999998875
No 312
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=84.97 E-value=0.47 Score=47.64 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=20.7
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.+.|+|+|++|+|||.|+..+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999988754
No 313
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=84.93 E-value=0.45 Score=50.53 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=21.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.++|+||+|+|||++++.+....
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhC
Confidence 79999999999999999998864
No 314
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=84.91 E-value=0.48 Score=47.18 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.8
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
+.|+|+|+||+|||.|+..+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999988775
No 315
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=84.83 E-value=0.46 Score=47.14 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=20.5
Q ss_pred cCCceEEEeCCCCchHHHHHHHHHH
Q 002353 533 RGDINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 533 RgdinvLLvGdPGTGKS~Lak~va~ 557 (932)
...++|+++|++|+|||+|++.+..
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4456999999999999999988763
No 316
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=84.74 E-value=0.47 Score=47.75 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.4
Q ss_pred CceEEEeCCCCchHHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~ 557 (932)
.++|+|+|++|+|||+|++.+..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 36999999999999999988764
No 317
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=84.64 E-value=0.45 Score=48.01 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.1
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.+.|+++|++|+|||+|++.+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999988763
No 318
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.51 E-value=0.46 Score=47.83 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=20.9
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.+.|+|+|++|+|||+|++.+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 358999999999999999988653
No 319
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=84.50 E-value=0.44 Score=47.58 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.0
Q ss_pred CceEEEeCCCCchHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va 556 (932)
.++|+|+|++|+|||+|++.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHH
Confidence 4699999999999999999875
No 320
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=84.40 E-value=0.69 Score=50.73 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=24.2
Q ss_pred ccCCceEEEeCCCCchHHHHHHHHHHhC------CCcEEecCCC
Q 002353 532 LRGDINVLLLGDPGTAKSQFLKYVEKTG------QRAVYTTGKG 569 (932)
Q Consensus 532 ~RgdinvLLvGdPGTGKS~Lak~va~~~------~r~v~~~g~~ 569 (932)
.+| + ++|.||||+|||+|+-.++..+ .+.+|.++..
T Consensus 27 ~~G-i-teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 27 QSG-L-LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp CSE-E-EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred cCC-e-EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 466 5 8999999999999965443322 2356665443
No 321
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=84.36 E-value=0.47 Score=46.38 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=21.2
Q ss_pred CCceEEEeCCCCchHHHHHHHHHHh
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~~ 558 (932)
..+.|+++|++|+|||+|+..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3458999999999999999988643
No 322
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=84.32 E-value=0.28 Score=49.37 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=21.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-|.|+|++|+|||++++.+++.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988764
No 323
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=84.29 E-value=0.48 Score=47.09 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=20.1
Q ss_pred CCceEEEeCCCCchHHHHHHHHHH
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~ 557 (932)
..+.|+|+|++|+|||.|++++..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 356999999999999999987653
No 324
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=84.27 E-value=0.4 Score=46.84 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=21.2
Q ss_pred cCCceEEEeCCCCchHHHHHHHHHHh
Q 002353 533 RGDINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 533 RgdinvLLvGdPGTGKS~Lak~va~~ 558 (932)
...++|+++|++|+|||+|++.+...
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcC
Confidence 34569999999999999999988743
No 325
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=84.26 E-value=0.4 Score=47.84 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=19.8
Q ss_pred CCceEEEeCCCCchHHHHHHHHH
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va 556 (932)
..+.|+|+|+||+|||+|++.+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999998763
No 326
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=84.20 E-value=0.5 Score=46.56 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.2
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.++|+++|++|+|||.|++.+...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 359999999999999999988754
No 327
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=84.14 E-value=0.65 Score=54.20 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=22.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
+++|+|++|+|||++++++....+.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCC
Confidence 7999999999999999999988754
No 328
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=84.13 E-value=0.55 Score=47.59 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=21.0
Q ss_pred cCCceEEEeCCCCchHHHHHHHHHH
Q 002353 533 RGDINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 533 RgdinvLLvGdPGTGKS~Lak~va~ 557 (932)
...+.|+|+|++|+|||.|++.+..
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEECcCCCCHHHHHHHHhc
Confidence 4457999999999999999998865
No 329
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=84.10 E-value=0.7 Score=54.24 Aligned_cols=44 Identities=16% Similarity=0.082 Sum_probs=33.0
Q ss_pred cChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHHH
Q 002353 505 YGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 505 ~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va~ 557 (932)
+|.+..+..|.-.|..+... +--.|.|+|.+|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~---------~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDL---------DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTS---------SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCC---------CceEEEEEcCCCCCHHHHHHHHHH
Confidence 69988888887666543110 011688999999999999999996
No 330
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=84.05 E-value=0.46 Score=49.82 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.+.|+|++|+|||+|++.++.+.+
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 688999999999999999987653
No 331
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=84.00 E-value=0.47 Score=50.74 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-++|+|+||+|||+|++.++...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 58899999999999999888764
No 332
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=83.96 E-value=0.83 Score=51.62 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=18.2
Q ss_pred eEEEeCCCCchHHHHHHHHH
Q 002353 537 NVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va 556 (932)
-++|+|+||+|||+|++.++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 59999999999999999665
No 333
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=83.86 E-value=0.51 Score=47.54 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=21.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-+.|+|++|+|||++++.++...
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998864
No 334
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=83.86 E-value=0.52 Score=47.13 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=20.9
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.+.|+|+|++|+|||.|++.+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 368999999999999999988653
No 335
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=83.84 E-value=0.4 Score=47.15 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=19.7
Q ss_pred cCCceEEEeCCCCchHHHHHHHHH
Q 002353 533 RGDINVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 533 RgdinvLLvGdPGTGKS~Lak~va 556 (932)
...++|+++|++|+|||+|++.+.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~ 42 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLK 42 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTS
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 345699999999999999998764
No 336
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=83.79 E-value=0.52 Score=47.01 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.0
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.++|+++|++|+|||+|++.+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 458999999999999999988753
No 337
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=83.77 E-value=0.37 Score=49.83 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-+.|+|++|+|||+|++.++.+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999987654
No 338
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=83.75 E-value=0.79 Score=54.76 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=18.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
.+|+.||||||||+++..+...
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999987766543
No 339
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=83.71 E-value=0.41 Score=49.96 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+||+|+|||+|++.++.+.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68899999999999999987654
No 340
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=83.66 E-value=0.53 Score=47.18 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.4
Q ss_pred CceEEEeCCCCchHHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~ 557 (932)
.+.|+|+|++|+|||.|+..+..
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999988764
No 341
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=83.65 E-value=0.51 Score=47.74 Aligned_cols=22 Identities=32% Similarity=0.609 Sum_probs=19.9
Q ss_pred CceEEEeCCCCchHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va 556 (932)
.++|+++|++|+|||+|++.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~ 55 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFA 55 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHH
Confidence 4599999999999999998876
No 342
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.55 E-value=0.54 Score=47.09 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=20.2
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
++|+++|++|+|||+|+..+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHhc
Confidence 4899999999999999998875
No 343
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=83.52 E-value=0.56 Score=47.04 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.9
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.++|+++|++|+|||+|+..+...
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 469999999999999999887743
No 344
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=83.43 E-value=0.65 Score=51.33 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=23.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAV 563 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v 563 (932)
.|+|+|++|+|||+|++.+++.++..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~i 35 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEI 35 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEE
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCce
Confidence 689999999999999999999876433
No 345
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=83.38 E-value=0.41 Score=46.99 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.0
Q ss_pred CceEEEeCCCCchHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYV 555 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~v 555 (932)
.++|+++|++|+|||+|+..+
T Consensus 22 ~~~i~v~G~~~~GKssli~~l 42 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRL 42 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 459999999999999999876
No 346
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=83.34 E-value=0.61 Score=47.38 Aligned_cols=23 Identities=35% Similarity=0.673 Sum_probs=20.7
Q ss_pred ceEEEeCCCCchHHHHHHHHHHh
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~ 558 (932)
++|+|+|++|+|||.|+..+...
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 58999999999999999988753
No 347
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=83.25 E-value=0.78 Score=50.55 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=20.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
-++|+|+||+|||+|+..++..
T Consensus 124 i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988875
No 348
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=83.02 E-value=0.71 Score=50.49 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=23.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAV 563 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v 563 (932)
-|+|+||+|+|||.|+..+++..+..+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~i 31 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEV 31 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEE
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccce
Confidence 578999999999999999999876433
No 349
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=82.95 E-value=0.51 Score=50.10 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=20.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-++|+|+||+|||+|++.++...
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999888643
No 350
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=82.94 E-value=0.64 Score=47.94 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
-+.|.|+.|+|||++++.++..
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6889999999999999998876
No 351
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=82.90 E-value=0.87 Score=49.68 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=23.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
-++|+||+|+|||.|+..+++..+..+.
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~~~ii 39 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILPVELI 39 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhCCCcEE
Confidence 5789999999999999999998764433
No 352
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=82.79 E-value=0.67 Score=51.42 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
.+.|+|++|+|||+|++.++...+.
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 7899999999999999999998643
No 353
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=82.72 E-value=0.42 Score=49.96 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+|++|+|||+|++.++.+.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 688999999999999999988754
No 354
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=82.71 E-value=0.48 Score=48.79 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+|+.|+|||+|++.++.+.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578899999999999999987653
No 355
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=82.54 E-value=0.67 Score=49.56 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.9
Q ss_pred ceEEEeCCCCchHHHHHHHHHHh
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~ 558 (932)
..|.|+|+||+|||++++.++..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~l 98 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKNL 98 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
Confidence 47999999999999999999964
No 356
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=82.52 E-value=0.73 Score=50.26 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-++|+|+||+|||+|+..++..+
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHhHHHHHHHHHH
Confidence 68999999999999999888653
No 357
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=82.51 E-value=0.6 Score=48.42 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=21.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-|.|.|+||+|||++++.+++.+.
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 689999999999999999998764
No 358
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=82.44 E-value=0.49 Score=50.20 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-+.|+|++|+|||+|++.++.+.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998664
No 359
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=82.43 E-value=0.85 Score=50.23 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=21.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+|+||+|||+|++.+....
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 78999999999999999998764
No 360
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=82.41 E-value=0.68 Score=50.86 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=22.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.++|+|++|+|||+|++.+....+
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 899999999999999999998765
No 361
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=82.35 E-value=0.64 Score=45.74 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=19.3
Q ss_pred CceEEEeCCCCchHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va 556 (932)
...|+|+|++|+|||.|+..+.
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVK 38 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 3489999999999999998764
No 362
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=82.34 E-value=0.49 Score=50.00 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+|+.|+|||+|++.++.+.+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 688999999999999999987653
No 363
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=82.31 E-value=0.77 Score=47.73 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=21.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-|-|+|++|+|||++++.++...
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999865
No 364
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=82.30 E-value=0.59 Score=49.41 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.3
Q ss_pred ceEEEeCCCCchHHHHHHHHHHh
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~ 558 (932)
++|.|+|+||+|||+|++.+...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999988643
No 365
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=82.16 E-value=0.52 Score=49.37 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.+.|+|++|+|||+|++.++.+.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 688999999999999999987653
No 366
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=82.12 E-value=0.51 Score=49.63 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+|++|+|||+|++.++.+.+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 688999999999999999986643
No 367
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=82.10 E-value=0.67 Score=50.51 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=21.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+|++|+|||+|++.++.+.+
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhhcc
Confidence 688999999999999999998764
No 368
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=82.00 E-value=0.43 Score=47.69 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=19.7
Q ss_pred CceEEEeCCCCchHHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~ 557 (932)
...|.|+|++|+|||+|++.+..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999987653
No 369
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=81.89 E-value=0.55 Score=50.82 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=19.8
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
+.|+|+|++|+|||+|++.+..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999764
No 370
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=81.87 E-value=0.55 Score=46.89 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=18.9
Q ss_pred ceEEEeCCCCchHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va 556 (932)
+.|+++|++|+|||+|++.+.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 389999999999999998774
No 371
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=81.87 E-value=1.2 Score=52.40 Aligned_cols=45 Identities=16% Similarity=0.086 Sum_probs=32.1
Q ss_pred ccccChHHHHHHHhhhhhcCccccccCcccccCCceEEEeCCCCchHHHHHHHHH
Q 002353 502 PSIYGHEDIKTALALSMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 502 p~I~G~~~vK~aillaL~gg~~k~~~~~~~~RgdinvLLvGdPGTGKS~Lak~va 556 (932)
+.++|.+.....|.-.|.... ++. --|+|+|++|+|||+||+.++
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~-----~~~-----~~v~I~G~~GiGKTtLa~~~~ 168 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLK-----GEP-----GWVTIHGMAGCGKSVLAAEAV 168 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTST-----TSC-----EEEEEECCTTSSHHHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhccc-----CCC-----ceEEEEcCCCCCHHHHHHHHH
Confidence 346788887777766665321 001 168999999999999998875
No 372
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=81.79 E-value=0.54 Score=49.57 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+|+.|+|||+|++.++.+.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999988654
No 373
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=81.78 E-value=0.36 Score=47.85 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=5.9
Q ss_pred CceEEEeCCCCchHHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~ 557 (932)
.++|+|+|++|+|||+|+..+..
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~ 42 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTS 42 (208)
T ss_dssp EEEEEEC----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46999999999999999987764
No 374
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=81.74 E-value=0.55 Score=48.73 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.+.|+|+.|+|||+|++.++.+.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 688999999999999999988764
No 375
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=81.59 E-value=0.55 Score=49.10 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-+.|+|+.|+|||+|++.++.+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998654
No 376
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=81.59 E-value=2.1 Score=46.41 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-++|+|++|+|||+++..++...
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHHH
Confidence 68899999999999999888764
No 377
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=81.58 E-value=0.55 Score=50.29 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+||+|+|||+|++.++.+.+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 588999999999999999987653
No 378
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=81.54 E-value=0.79 Score=45.90 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.6
Q ss_pred ceEEEeCCCCchHHHHHHHHHHh
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~ 558 (932)
..|||.|++|+|||+++..+.+.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 38999999999999999988774
No 379
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=81.42 E-value=0.57 Score=49.86 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=20.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-+.|+|+.|+|||+|++.++.+.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 58899999999999999998664
No 380
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=81.40 E-value=0.63 Score=49.37 Aligned_cols=22 Identities=18% Similarity=0.529 Sum_probs=19.6
Q ss_pred CceEEEeCCCCchHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va 556 (932)
.++|+|+|.||+|||+|+..+.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHh
Confidence 5699999999999999998763
No 381
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=81.29 E-value=0.77 Score=46.93 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.6
Q ss_pred CceEEEeCCCCchHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va 556 (932)
.+.|+|+|+||+|||.|+..+.
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999998775
No 382
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=81.22 E-value=0.57 Score=49.99 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=21.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+|++|+|||+|++.++.+.+
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 688999999999999999987653
No 383
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=81.18 E-value=0.77 Score=46.84 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=20.0
Q ss_pred CceEEEeCCCCchHHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~ 557 (932)
.+.|+|+|++|+|||+|+..+..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999988753
No 384
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=81.14 E-value=0.77 Score=51.30 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.++|+|++|+|||++++.+....+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 799999999999999999988643
No 385
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=81.09 E-value=0.57 Score=53.15 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-|+|+|+||+|||++++.+++..
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68899999999999999987654
No 386
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=81.03 E-value=0.67 Score=49.13 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+|++|+|||+|++.++.+.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999998764
No 387
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=81.02 E-value=0.77 Score=48.44 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.9
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
+.|+|+|+||+|||+|+..+..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 4899999999999999998864
No 388
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=80.99 E-value=0.71 Score=51.38 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=24.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC----CCcEEecCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG----QRAVYTTGKG 569 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~----~r~v~~~g~~ 569 (932)
-++|+||||+|||+|+..++..+ .+.+|.++..
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 68999999999999999887653 2334655443
No 389
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=80.98 E-value=0.6 Score=49.43 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+|+.|+|||+|++.++.+.+
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 588999999999999999987643
No 390
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=80.92 E-value=1.1 Score=55.01 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=18.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
.+++.|+||||||+++..+...
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999887766543
No 391
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=80.70 E-value=0.62 Score=49.99 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+|+.|+|||+|++.++.+.+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 688999999999999999986653
No 392
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=80.69 E-value=0.66 Score=52.83 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
++.|+|++|+|||+|++.+...
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5999999999999999999876
No 393
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=80.63 E-value=0.8 Score=49.69 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=19.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
-++|+|+||+|||+|+..++..
T Consensus 100 i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988764
No 394
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=80.59 E-value=0.63 Score=49.14 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.+.|+|+.|+|||+|++.++.+.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 588999999999999999987654
No 395
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=80.52 E-value=0.62 Score=49.49 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+|+.|+|||+|++.++.+.+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 588999999999999999987754
No 396
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=80.49 E-value=0.78 Score=48.23 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=20.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
.+.|+|++|+|||+|++.++.+
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999976
No 397
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=80.49 E-value=0.6 Score=49.72 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-+.|+|++|+|||+|++.++.+.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68899999999999999987654
No 398
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=80.20 E-value=0.72 Score=49.96 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=21.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-|.|+|++|+|||+|++.++...+
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 588999999999999999998754
No 399
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=80.07 E-value=0.9 Score=52.25 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=22.1
Q ss_pred CceEEEeCCCCchHHHHHHHHHHhC
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~~ 559 (932)
...|+|+|.||+|||++++.+++.+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3489999999999999999998764
No 400
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=80.07 E-value=0.83 Score=48.58 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=20.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
-+.|+|+.|+|||+|++.++.+
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999976
No 401
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=79.89 E-value=1.6 Score=47.91 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=20.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-+.|+|++|+|||++++.++...
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998764
No 402
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=79.85 E-value=0.88 Score=48.50 Aligned_cols=22 Identities=18% Similarity=0.597 Sum_probs=19.9
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
+.|.|+|+||+|||+|++.+..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 4799999999999999999864
No 403
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=79.69 E-value=0.97 Score=45.77 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=20.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.|+|+|++|+|||+|+..+....
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 79999999999999998887653
No 404
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=79.63 E-value=1 Score=46.28 Aligned_cols=22 Identities=14% Similarity=0.386 Sum_probs=19.1
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
+-|+|+|++|+|||.|+..+..
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCcCHHHHHHHHHh
Confidence 4799999999999999987654
No 405
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=79.58 E-value=2 Score=46.70 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-++|+|+.|+|||++++.+....
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 46889999999999999999764
No 406
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=79.57 E-value=0.91 Score=60.74 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=21.0
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhC
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~ 559 (932)
-+++|+||||||||+||.+++..+
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999998886654
No 407
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=79.54 E-value=0.8 Score=50.94 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+||+|+|||+|++.++.+.+
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 578999999999999999997653
No 408
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=79.52 E-value=0.73 Score=45.72 Aligned_cols=24 Identities=8% Similarity=0.195 Sum_probs=21.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.+.|+|++|+|||+|++.+.....
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 578999999999999999998754
No 409
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=79.52 E-value=0.85 Score=51.84 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=21.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.++|+|++|+|||++++++....+
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcC
Confidence 699999999999999999988754
No 410
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=79.48 E-value=0.76 Score=47.97 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=23.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
.+=|+|+||+|||++++.+++...-..+.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is 38 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIS 38 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEC
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeee
Confidence 57789999999999999999876544443
No 411
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=79.46 E-value=0.92 Score=49.07 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.4
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
+.|+|+|+||+|||.|+..+..
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~ 25 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFS 25 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999987653
No 412
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=79.41 E-value=0.88 Score=51.74 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.2
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhC
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~ 559 (932)
+.|.|+|++|+|||+|++.+....
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHhCCC
Confidence 478999999999999999998654
No 413
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=79.39 E-value=0.94 Score=49.18 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.+.|+|++|+|||++++.++....
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 688899999999999999997753
No 414
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=79.36 E-value=0.79 Score=50.83 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+||+|+|||+|++.++.+.+
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCccHHHHHHHHHcCCC
Confidence 588999999999999999997653
No 415
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=79.05 E-value=0.85 Score=50.84 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+||+|+|||+|++.++.+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 578999999999999999997653
No 416
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=79.05 E-value=0.84 Score=50.83 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+||+|+|||+|++.++.+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHCCCC
Confidence 578999999999999999997653
No 417
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=79.03 E-value=0.78 Score=51.10 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=21.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+||+|+|||+|++.++.+.+
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 578999999999999999997653
No 418
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=78.96 E-value=2 Score=49.89 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-++|+|++|+|||++++.++...
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHh
Confidence 68899999999999999998764
No 419
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=78.91 E-value=0.75 Score=46.33 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=20.2
Q ss_pred CceEEEeCCCCchHHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~ 557 (932)
.+.|+|+|++|+|||+|+..+..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 45899999999999999988754
No 420
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=78.87 E-value=0.87 Score=50.96 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=21.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+||+|+|||+|++.++.+.+
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHHcCCC
Confidence 578999999999999999997754
No 421
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=78.85 E-value=1 Score=48.53 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=21.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-|.|+|++|+|||+|++.++..++
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999999988764
No 422
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=78.70 E-value=0.89 Score=51.05 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+||+|+|||+|++.++.+.+
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Confidence 578999999999999999997653
No 423
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=78.48 E-value=1.1 Score=48.73 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=21.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-++|+|++|+|||++++.++...
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998874
No 424
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=78.46 E-value=0.89 Score=50.86 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+||+|+|||+|++.++.+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 578999999999999999997754
No 425
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=78.39 E-value=1.1 Score=50.05 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=21.6
Q ss_pred CCceEEEeCCCCchHHHHHHHHHHh
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.+-|++++|++|+|||++++.+...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 3449999999999999999988754
No 426
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=78.38 E-value=1 Score=45.38 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.++|+|.+|+|||+|+..+....
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 79999999999999999887653
No 427
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=78.17 E-value=3.2 Score=41.77 Aligned_cols=22 Identities=18% Similarity=0.076 Sum_probs=16.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
=.+++|++|+|||+.|-.++..
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r 31 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRR 31 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 3677999999999766554443
No 428
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=79.63 E-value=0.43 Score=47.57 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=19.9
Q ss_pred CCceEEEeCCCCchHHHHHHHHH
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va 556 (932)
..++|+++|++|+|||+|+..+.
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~ 51 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYT 51 (204)
Confidence 34699999999999999997765
No 429
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=78.02 E-value=2.5 Score=51.09 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=15.6
Q ss_pred eEEEeCCCCchHHHHHH
Q 002353 537 NVLLLGDPGTAKSQFLK 553 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak 553 (932)
+++++||+|+|||..+-
T Consensus 48 ~~lv~apTGsGKT~~~~ 64 (715)
T 2va8_A 48 RLLLTSPTGSGKTLIAE 64 (715)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred cEEEEcCCCCcHHHHHH
Confidence 89999999999999873
No 430
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=77.97 E-value=2.6 Score=50.87 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=20.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
++|++||+|+|||..+-......+..++.
T Consensus 157 ~vlv~apTGSGKT~~al~~l~~~~~gl~l 185 (677)
T 3rc3_A 157 IIFHSGPTNSGKTYHAIQKYFSAKSGVYC 185 (677)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEE
Confidence 79999999999998654333334555554
No 431
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=77.86 E-value=0.92 Score=48.22 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=20.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+|+.|+|||+|++.++.+.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998765
No 432
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=77.62 E-value=1 Score=49.92 Aligned_cols=22 Identities=9% Similarity=0.098 Sum_probs=19.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
-++|+|+||+|||+|+..++..
T Consensus 63 iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999998877653
No 433
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=77.59 E-value=0.8 Score=50.88 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+||+|+|||+|++.++.+.+
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 578999999999999999987653
No 434
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=77.52 E-value=1.2 Score=50.47 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=23.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEE
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVY 564 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~ 564 (932)
-|+|+||+|+|||.|+..+++..+..+.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~ii 31 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVI 31 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEEEE
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCeEe
Confidence 5789999999999999999998765443
No 435
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=77.38 E-value=1.2 Score=42.85 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=19.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-.+|+||.|+|||.++.++...+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999998654
No 436
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=77.33 E-value=1.1 Score=47.75 Aligned_cols=22 Identities=18% Similarity=0.546 Sum_probs=20.1
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
++|+|+|.||+|||+|+.++..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g 25 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTG 25 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998864
No 437
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=77.24 E-value=1.7 Score=53.63 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=16.7
Q ss_pred eEEEeCCCCchHHHHHHHHH
Q 002353 537 NVLLLGDPGTAKSQFLKYVE 556 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va 556 (932)
.+|+.|+||||||+++..+.
T Consensus 377 ~~lI~GppGTGKT~~i~~~i 396 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIV 396 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 68999999999998766543
No 438
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=77.20 E-value=1.1 Score=47.33 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=20.5
Q ss_pred CceEEEeCCCCchHHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~ 557 (932)
.+.|+++|++|+|||+|+..+..
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999998874
No 439
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=77.05 E-value=0.95 Score=48.82 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.+.|+|+.|+|||+|++.++.+.+
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 688999999999999999988764
No 440
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=76.97 E-value=1.6 Score=44.26 Aligned_cols=29 Identities=10% Similarity=0.111 Sum_probs=25.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCCcEEe
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQRAVYT 565 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r~v~~ 565 (932)
-|.|.|++|+|||++++.+++.+.-.++-
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 69999999999999999999998777663
No 441
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=76.90 E-value=0.85 Score=46.10 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=19.8
Q ss_pred CceEEEeCCCCchHHHHHHH-HHH
Q 002353 535 DINVLLLGDPGTAKSQFLKY-VEK 557 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~-va~ 557 (932)
.++|+++|++|+|||+|++. +..
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999997 443
No 442
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=76.81 E-value=1 Score=45.18 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=19.9
Q ss_pred CceEEEeCCCCchHHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~ 557 (932)
.++|+|+|++|+|||+|+..+..
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999987653
No 443
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=76.52 E-value=1.2 Score=52.07 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.7
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhC
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~ 559 (932)
.-|+|+|.||+|||++++.+++.+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998764
No 444
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=76.52 E-value=1.2 Score=47.05 Aligned_cols=21 Identities=24% Similarity=0.615 Sum_probs=19.1
Q ss_pred eEEEeCCCCchHHHHHHHHHH
Q 002353 537 NVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~ 557 (932)
+|+|+|+||+|||+|+..+..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g 23 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTN 23 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 799999999999999998854
No 445
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=76.41 E-value=1.7 Score=44.85 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=22.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.|.|.|.+|+|||++++.+++.++
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999999874
No 446
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=76.41 E-value=1.4 Score=43.76 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=20.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-+.|+|++|+|||+|++.+...+
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Confidence 58899999999999999988754
No 447
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=76.14 E-value=3.4 Score=45.91 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=21.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-++|+|++|+|||++++.++...
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhhc
Confidence 68999999999999999998875
No 448
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=75.71 E-value=1.1 Score=49.78 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=19.5
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
++|+|+|++|+|||+|++.+..
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHhC
Confidence 4899999999999999998743
No 449
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=75.70 E-value=0.97 Score=50.89 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+||+|+|||+|++.++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCSE
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 689999999999999999998754
No 450
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=75.61 E-value=0.99 Score=49.10 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-+.|+|++|+|||+|++.++.+.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EEEEECCCCchHHHHHHHHHcCCC
Confidence 689999999999999999987653
No 451
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=75.60 E-value=1.6 Score=48.30 Aligned_cols=23 Identities=43% Similarity=0.717 Sum_probs=20.8
Q ss_pred ceEEEeCCCCchHHHHHHHHHHh
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~ 558 (932)
..|.|+|+||+|||+|++.+...
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 452
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=75.59 E-value=1.8 Score=49.01 Aligned_cols=24 Identities=33% Similarity=0.648 Sum_probs=21.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.+.|+|++|+|||+|++.+..+.+
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 789999999999999999997643
No 453
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=75.59 E-value=2.5 Score=39.34 Aligned_cols=30 Identities=30% Similarity=0.784 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCccccccccCcccccCC-CCCCCCCCC
Q 002353 342 QQVKYDCNKCGAILGPFFQNSYSEVKVG-SCPECQSKG 378 (932)
Q Consensus 342 ~~~~f~C~~C~~~~~~~~q~~~~~~~p~-~C~~C~s~~ 378 (932)
..+.|.|..||+.+.. . ..+. .||.|++..
T Consensus 70 ~p~~~~C~~CG~~~e~---~----~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 70 EKVELECKDCSHVFKP---N----ALDYGVCEKCHSKN 100 (119)
T ss_dssp ECCEEECSSSSCEECS---C----CSTTCCCSSSSSCC
T ss_pred ccceEEcCCCCCEEeC---C----CCCCCcCccccCCC
Confidence 3467999999998543 1 1356 899999874
No 454
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=75.41 E-value=2.8 Score=50.73 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=15.0
Q ss_pred eEEEeCCCCchHHHHH
Q 002353 537 NVLLLGDPGTAKSQFL 552 (932)
Q Consensus 537 nvLLvGdPGTGKS~La 552 (932)
+++++||+|+|||..+
T Consensus 41 ~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 41 NALISIPTASGKTLIA 56 (720)
T ss_dssp EEEEECCGGGCHHHHH
T ss_pred cEEEEcCCccHHHHHH
Confidence 8999999999999876
No 455
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=75.41 E-value=1.3 Score=51.04 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=22.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
-++|+|+.|+|||+|+|.++.+..
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTTH
T ss_pred EEEEECCCCCCHHHHHHHHhCccc
Confidence 689999999999999999998864
No 456
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=75.38 E-value=1.4 Score=51.91 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=22.1
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.+.|+|++|+|||+|++.++..+.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHhhc
Confidence 799999999999999999998764
No 457
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=75.27 E-value=1.3 Score=44.34 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=19.0
Q ss_pred EEEeCCCCchHHHHHHHHHHh
Q 002353 538 VLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 538 vLLvGdPGTGKS~Lak~va~~ 558 (932)
+|++|.+|+|||.+|..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 799999999999999988754
No 458
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=75.21 E-value=1.4 Score=47.96 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
-++|.|+||+|||+|+..++..
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5899999999999999887753
No 459
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=75.20 E-value=1.3 Score=51.79 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=25.1
Q ss_pred eEEEeCCCCchHHHHHHH--HHHhCC---CcEEecCCC
Q 002353 537 NVLLLGDPGTAKSQFLKY--VEKTGQ---RAVYTTGKG 569 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~--va~~~~---r~v~~~g~~ 569 (932)
.++|+|++|+|||+|++. ++.+.+ ..++.+|..
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 689999999999999998 455433 456666654
No 460
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=75.01 E-value=1.3 Score=49.33 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=20.3
Q ss_pred cccCCce-EEEeCCCCchHHHHHHHHHHh
Q 002353 531 RLRGDIN-VLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 531 ~~Rgdin-vLLvGdPGTGKS~Lak~va~~ 558 (932)
+.|..+. |.|+|+||+|||+|++.+...
T Consensus 174 r~~~~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 174 NKRNNIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp -----CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred hhhcCCcEEEEECCCCCCHHHHHHHHHCC
Confidence 3444556 899999999999999998743
No 461
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=74.93 E-value=1.5 Score=49.95 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=21.9
Q ss_pred CCceEEEeCCCCchHHHHHHHHHHh
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~~ 558 (932)
+.+.|.|+|+||+|||+|++.+...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 3479999999999999999998754
No 462
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=74.84 E-value=1.7 Score=39.09 Aligned_cols=47 Identities=9% Similarity=0.161 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHhcCc
Q 002353 849 YNALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQELEI 899 (932)
Q Consensus 849 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~i 899 (932)
..+.+..+.+.++..++.....+.. .++..++|+...|++++++|||
T Consensus 51 l~~~l~~~Er~~I~~aL~~~~gn~~----~AA~~LGIsR~TL~rkLkk~gi 97 (98)
T 1eto_A 51 YELVLAEVEQPLLDMVMQYTLGNQT----RAALMMGINRGTLRKKLKKYGM 97 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHH----HHHHHHTSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHH----HHHHHhCCCHHHHHHHHHHhCC
Confidence 3455677889999999887665444 6778999999999999999997
No 463
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=74.53 E-value=8.2 Score=42.02 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.3
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-++++|++|+|||+++..++..+
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999888754
No 464
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=74.50 E-value=1.4 Score=48.90 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.4
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-+.|+|+||+|||+|++.+....
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58899999999999999998654
No 465
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=74.47 E-value=2 Score=47.58 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=22.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
-+.|+|++|+|||+|++.++.....
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999998643
No 466
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=74.44 E-value=2.8 Score=47.53 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=14.7
Q ss_pred eEEEeCCCCchHHHHH
Q 002353 537 NVLLLGDPGTAKSQFL 552 (932)
Q Consensus 537 nvLLvGdPGTGKS~La 552 (932)
++|++||+|+|||..+
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 8999999999999864
No 467
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=74.39 E-value=1.7 Score=43.01 Aligned_cols=23 Identities=9% Similarity=0.086 Sum_probs=20.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-+.|+|++|+|||+++..+...+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 47899999999999999888764
No 468
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=74.33 E-value=1.2 Score=48.20 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-+.|+|++|+|||+|++.++...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999998664
No 469
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=74.26 E-value=0.96 Score=39.99 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHhcCc
Q 002353 850 NALLLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQELEI 899 (932)
Q Consensus 850 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~i 899 (932)
.+.+..+.+.++.++|.....+.. .++..++|+...|+++++++||
T Consensus 45 ~~~l~~~E~~~i~~aL~~~~gn~~----~aA~~LGIsr~tL~rklkk~~i 90 (91)
T 1ntc_A 45 SEAQPELERTLLTTALRHTQGHKQ----EAARLLGWGAATLTAKLKELGM 90 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCTT----HHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHH----HHHHHHCcCHHHHHHHHHHhCc
Confidence 345666788888888887665444 6778999999999999999986
No 470
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=74.15 E-value=1.4 Score=37.35 Aligned_cols=31 Identities=23% Similarity=0.548 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCccccccccCcccccCCCCCCCCCCC
Q 002353 342 QQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSKG 378 (932)
Q Consensus 342 ~~~~f~C~~C~~~~~~~~q~~~~~~~p~~C~~C~s~~ 378 (932)
..+.|.|..||..+... . ..+..||.|+.+-
T Consensus 25 ~~v~Y~C~~CG~~~e~~--~----~d~irCp~CG~RI 55 (70)
T 1twf_L 25 ATLKYICAECSSKLSLS--R----TDAVRCKDCGHRI 55 (70)
T ss_dssp CCCCEECSSSCCEECCC--T----TSTTCCSSSCCCC
T ss_pred ceEEEECCCCCCcceeC--C----CCCccCCCCCceE
Confidence 45789999999985422 1 1356899999853
No 471
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=73.93 E-value=1.9 Score=50.20 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
.++|+|+||+|||+|++.++...+
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999887643
No 472
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=73.93 E-value=1.6 Score=47.14 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
.|.|+|+||+|||+|++.+...
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 7999999999999999998753
No 473
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=73.89 E-value=1.5 Score=46.10 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.7
Q ss_pred CceEEEeCCCCchHHHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~ 557 (932)
.++|+|+|++|+|||+|+.++..
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35999999999999999998875
No 474
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=73.79 E-value=3.7 Score=45.23 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.|.|+|.||+|||+|+..++..+
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999887653
No 475
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=73.79 E-value=1.6 Score=47.19 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.9
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-+.|+|++|+|||+|++.+. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 57899999999999999999 64
No 476
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=73.67 E-value=1.6 Score=49.81 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=22.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQR 561 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~r 561 (932)
-+.|+|++|+|||+|++.++.....
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 6899999999999999999998753
No 477
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=73.65 E-value=1.8 Score=48.75 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=21.7
Q ss_pred CCceEEEeCCCCchHHHHHHHHHHh
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~~ 558 (932)
....+.|+|+||+|||+|++.+...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3348999999999999999999873
No 478
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=73.63 E-value=6.8 Score=44.39 Aligned_cols=22 Identities=9% Similarity=0.048 Sum_probs=18.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
++||+|++|+|||..+-.+...
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~ 131 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINE 131 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHH
Confidence 6999999999999987655443
No 479
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=73.57 E-value=1.5 Score=48.96 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-+.|+|++|+|||+|++.++.+.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 57899999999999999998664
No 480
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=73.48 E-value=1.6 Score=48.40 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=19.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
.++|.|+||+|||+|+..++..
T Consensus 65 ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999877654
No 481
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=73.48 E-value=2.8 Score=47.60 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.0
Q ss_pred CceEEEeCCCCchHHHHHHHHHHh
Q 002353 535 DINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~va~~ 558 (932)
.+.|.|+|.||+|||+|+..+...
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~ 198 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGE 198 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCC
Confidence 468999999999999999988753
No 482
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=73.40 E-value=4.7 Score=41.60 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=18.7
Q ss_pred cCCceEEEeCCCCchHHH-HHHHHHHh
Q 002353 533 RGDINVLLLGDPGTAKSQ-FLKYVEKT 558 (932)
Q Consensus 533 RgdinvLLvGdPGTGKS~-Lak~va~~ 558 (932)
+|.|. +++|+-|+|||+ |++.+.+.
T Consensus 27 ~G~I~-vitG~M~sGKTT~Llr~~~r~ 52 (219)
T 3e2i_A 27 SGWIE-CITGSMFSGKSEELIRRLRRG 52 (219)
T ss_dssp CCEEE-EEEECTTSCHHHHHHHHHHHH
T ss_pred CceEE-EEECCCCCCHHHHHHHHHHHH
Confidence 35555 569999999998 77776554
No 483
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=73.39 E-value=3.7 Score=39.35 Aligned_cols=47 Identities=19% Similarity=0.469 Sum_probs=27.2
Q ss_pred EEEEEcCCCCCcccccc--c---cCccc----c-----cCCCCCCCCCCCceEEeecCceee
Q 002353 343 QVKYDCNKCGAILGPFF--Q---NSYSE----V-----KVGSCPECQSKGPFTINIEQTIYR 390 (932)
Q Consensus 343 ~~~f~C~~C~~~~~~~~--q---~~~~~----~-----~p~~C~~C~s~~~f~~~~~~s~~~ 390 (932)
.+.+.|..||++...-. . ....+ . .+..||.|++.. +.+....-.++
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~-~~i~~G~el~I 128 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHD-FEVVKGRGVYV 128 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCC-EEEEESSCEEE
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCc-cEEecCCeEEE
Confidence 35799999999854211 0 00000 1 167899999875 55555544443
No 484
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=72.91 E-value=1.8 Score=46.43 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.1
Q ss_pred CCceEEEeCCCCchHHHHHHHHHH
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~ 557 (932)
..+.++++|.||+|||+|+..+..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAK 142 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCceEEEEecCCCchHHHHHHHhc
Confidence 456899999999999999998863
No 485
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=72.88 E-value=0.94 Score=47.55 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=22.2
Q ss_pred ceEEEeCCCCchHHHHHHHHHHhCC
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~~~ 560 (932)
..|.|.|.+|+|||++++.+++.+.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3789999999999999999988763
No 486
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=72.79 E-value=1.9 Score=48.51 Aligned_cols=26 Identities=19% Similarity=0.443 Sum_probs=21.5
Q ss_pred cCCceEEEeCCCCchHHHHHHHHHHh
Q 002353 533 RGDINVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 533 RgdinvLLvGdPGTGKS~Lak~va~~ 558 (932)
+....|.|+|.||+|||+|++.+...
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34458999999999999999998743
No 487
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=72.56 E-value=2.1 Score=43.28 Aligned_cols=33 Identities=24% Similarity=0.654 Sum_probs=22.5
Q ss_pred EEEEEcCCCCCccccccccCcccccCCCCCCCCCCC-ceEE
Q 002353 343 QVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSKG-PFTI 382 (932)
Q Consensus 343 ~~~f~C~~C~~~~~~~~q~~~~~~~p~~C~~C~s~~-~f~~ 382 (932)
...|.|..||++.. + ...|..||.|+... .|..
T Consensus 153 ~~~~~C~~CG~~~~-----g--~~~p~~CP~C~~~k~~f~~ 186 (191)
T 1lko_A 153 ATKWRCRNCGYVHE-----G--TGAPELCPACAHPKAHFEL 186 (191)
T ss_dssp EEEEEETTTCCEEE-----E--EECCSBCTTTCCBGGGEEE
T ss_pred CceEEECCCCCEee-----C--CCCCCCCCCCcCCHHHHHh
Confidence 45799999999843 1 12466999998742 3543
No 488
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=72.53 E-value=1.7 Score=46.88 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.5
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.++|+|++|+|||+++..++..+
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999888764
No 489
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=72.11 E-value=1.7 Score=45.93 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=19.9
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
+.++++|.||+|||+|+..+..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~ 121 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKG 121 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred hheEEeCCCCCCHHHHHHHHhc
Confidence 3899999999999999998874
No 490
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=72.06 E-value=2 Score=46.06 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.7
Q ss_pred ceEEEeCCCCchHHHHHHHHHH
Q 002353 536 INVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~ 557 (932)
+.|+++|++|+|||+|+..+..
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~ 177 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTT 177 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCChHHHHHHHHh
Confidence 4899999999999999987764
No 491
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=71.91 E-value=1.6 Score=46.17 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=20.4
Q ss_pred ceEEEeCCCCchHHHHHHHHHHh
Q 002353 536 INVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 536 invLLvGdPGTGKS~Lak~va~~ 558 (932)
+.|+++|+||+|||+|+.++...
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CeEEEEeCCCCCHHHHHHHHHCC
Confidence 48999999999999999998743
No 492
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=71.91 E-value=2.1 Score=51.13 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=21.8
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.|+|+|.||+|||++++.+++.+
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999876
No 493
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=71.90 E-value=1.8 Score=43.78 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.0
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
-.+|+|+.|+|||.++.+|...+
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999998764
No 494
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=71.89 E-value=2.4 Score=46.55 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.6
Q ss_pred eEEEeCCCCchHHHHHHHHHHhC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTG 559 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~ 559 (932)
.+.|+|+||+|||++++.++...
T Consensus 58 ~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 58 RLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 78899999999999999998653
No 495
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=71.88 E-value=2 Score=47.45 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=20.8
Q ss_pred CCceEEEeCCCCchHHHHHHHHHH
Q 002353 534 GDINVLLLGDPGTAKSQFLKYVEK 557 (932)
Q Consensus 534 gdinvLLvGdPGTGKS~Lak~va~ 557 (932)
+.+.|+++|+||+|||+|+..+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~ 189 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTT 189 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999988754
No 496
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=71.58 E-value=3.3 Score=48.18 Aligned_cols=24 Identities=13% Similarity=0.002 Sum_probs=22.7
Q ss_pred eEEEeCCCCchHHHHHHHHHHhCC
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKTGQ 560 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~~~ 560 (932)
+|.|+|.+|+|||++++.+++.+.
T Consensus 397 ~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 397 SIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp EEEECTTCCSCHHHHHHHHHHHHT
T ss_pred EEEecccCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999875
No 497
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=71.52 E-value=0.52 Score=46.85 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=18.3
Q ss_pred CceEEEeCCCCchHHHHHHHH
Q 002353 535 DINVLLLGDPGTAKSQFLKYV 555 (932)
Q Consensus 535 dinvLLvGdPGTGKS~Lak~v 555 (932)
.++|+|+|++|+|||+|++.+
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l 53 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRF 53 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSS
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 469999999999999997654
No 498
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=71.49 E-value=1.4 Score=47.94 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.2
Q ss_pred eEEEeCCCCchHHHHHHHHHHh
Q 002353 537 NVLLLGDPGTAKSQFLKYVEKT 558 (932)
Q Consensus 537 nvLLvGdPGTGKS~Lak~va~~ 558 (932)
-+.|+|+||+|||+|++.+...
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHhccc
Confidence 6899999999999999998644
No 499
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=71.37 E-value=0.97 Score=39.34 Aligned_cols=43 Identities=5% Similarity=-0.065 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCccceeeHHHHHHHHHhcCc
Q 002353 853 LLDLLRELVKNALHFEEIISGSRSTSGLSHIDVKVVDLLNRAQELEI 899 (932)
Q Consensus 853 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~i 899 (932)
+..+.+.++.++|...+.+.. .++..++|+..+|+++++++||
T Consensus 38 l~~~Er~~I~~aL~~~~GN~s----~AA~~LGISR~TLyrKLkk~gi 80 (81)
T 1umq_A 38 ADRVRWEHIQRIYEMCDRNVS----ETARRLNMHRRTLQRILAKRSP 80 (81)
T ss_dssp HHHHHHHHHHHHHHHTTSCHH----HHHHHHTSCHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHHhCCCHH----HHHHHhCCCHHHHHHHHHHhCC
Confidence 556778888888887655443 6778999999999999999987
No 500
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=71.22 E-value=9 Score=39.37 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=33.7
Q ss_pred CCeeeeccccccCcchhhhHHHHHhhceeeeeccceeEeeccceEEEeeeCCCCCccCCCCCcccccCCChhhhccccEE
Q 002353 600 RGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSENVELTDPIISRFDVL 679 (932)
Q Consensus 600 ~GIl~IDE~dkm~~~~~~~L~eamEqq~isi~kagi~~~l~ar~sIIAAaNp~~Gry~~~~~~~~ni~L~~~LLsRFDli 679 (932)
-.+++|||+.-++++.-. ++..|... ...||+|.-... | ....| .-++.|+..-|.+
T Consensus 102 ~dvViIDEaQF~~~~~V~-~l~~l~~~---------------~~~Vi~~Gl~~D--F-~~~~F----~~~~~Ll~~AD~V 158 (214)
T 2j9r_A 102 MDVIAIDEVQFFDGDIVE-VVQVLANR---------------GYRVIVAGLDQD--F-RGLPF----GQVPQLMAIAEHV 158 (214)
T ss_dssp CCEEEECCGGGSCTTHHH-HHHHHHHT---------------TCEEEEEECSBC--T-TSCBC----TTHHHHHHHCSEE
T ss_pred CCEEEEECcccCCHHHHH-HHHHHhhC---------------CCEEEEEecccc--c-ccCcc----ccHHHHHHhcccE
Confidence 369999999998766443 33332211 224555553211 1 11222 5566788888887
Q ss_pred EEe
Q 002353 680 CVV 682 (932)
Q Consensus 680 ~~l 682 (932)
.-+
T Consensus 159 tel 161 (214)
T 2j9r_A 159 TKL 161 (214)
T ss_dssp EEC
T ss_pred Eee
Confidence 776
Done!