BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002354
(932 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 349 bits (896), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 234/670 (34%), Positives = 355/670 (52%), Gaps = 53/670 (7%)
Query: 244 GH-LSHIL-GAKASWIHVFHSTGFHLSLSLFTLLGPGFQLILDGVKSLFKGAPNMNTLVG 301
GH L H + G +SWI + L+ +L G+ G +SL G NM TL+
Sbjct: 102 GHGLKHFISGNGSSWIQLL--------LATPVVLWGGWPFFKRGWQSLKTGQLNMFTLIA 153
Query: 302 LGAVSSFTVSSLAALVPKLGWKAF----------FEEPIMLIAFVLLGKNLEQRAKIKAT 351
+G ++ S +A L P + AF FE ++ VLLG+ LE +A+ +
Sbjct: 154 MGIGVAWIYSMVAVLWPGVFPHAFRSQEGVVAVYFEAAAVITTLVLLGQVLELKAREQTG 213
Query: 352 SDMTGLLGILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAGRST 411
S + LL ++P A + ++ +++ EV +++ VGD + V PG++IP DG V+ GRS
Sbjct: 214 SAIRALLKLVPESAHRIKEDGSEE---EVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF 270
Query: 412 VDESSFTGEPLPVTKIPESEVAAGSINLNGTLTVEVRRPGGETAMGDIVRLVEEAQSREA 471
VDES TGEP+PV K ++V +IN G+ ++ G +T + IV++V +AQ A
Sbjct: 271 VDESMVTGEPIPVAKEASAKVIGATINQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRA 330
Query: 472 PVQRLADQVSGHFTYGVIALSAATFVFWNLFGAHVLPTAIQYGGPVSLALQLSCSVLVVA 531
P+QRLAD VSG F VI ++ +F+ W L G A+ YG L + SVL++A
Sbjct: 331 PIQRLADTVSGWFVPAVILVAVLSFIVWALLGPQ---PALSYG------LIAAVSVLIIA 381
Query: 532 CPCALGLATPTAMLVXXXXXXXXXXXXXXXNILEKFAMVNTVVFDKTGTLTIGRPVVTKV 591
CPCALGLATP +++V LE+ VNT+V DKTGTLT G P +T++
Sbjct: 382 CPCALGLATPMSIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRI 441
Query: 592 VTSGSLTDPNSKQNPIHPLSETEILKFAAGVESNTVHPIGKAIVEAAEFSNCQNVKVADG 651
VT + D L AA +E + HP+ AIV AA+ + + +
Sbjct: 442 VTDDFVED--------------NALALAAALEHQSEHPLANAIVHAAKE---KGLSLGSV 484
Query: 652 TFIEEP-GSGTVAIIEDRKVSVGTIDWLRSHGVDTST-FQEVEMEDLMNQSLVYVGVDNM 709
E P G G V ++ V++G ++ HG D + F++ + S++++ VD
Sbjct: 485 EAFEAPTGKGVVGQVDGHHVAIGNARLMQEHGGDNAPLFEKADELRGKGASVMFMAVDGK 544
Query: 710 LAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGVKP 769
L+ VED I+ + L GI + ML+GD K +AE VA +GI KV++ + P
Sbjct: 545 TVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGI--KKVVAEIMP 602
Query: 770 NEKKRFINELQNDENVVAMVGDGINDAAALASSHIXXXXXXXXXXXXXXXXXXLMGNRLS 829
+K R ++EL++ +VAM GDG+NDA ALA + I L+ L
Sbjct: 603 EDKSRIVSELKDKGLIVAMAGDGVNDAPALAKADIGIAMGTGTDVAIESAGVTLLHGDLR 662
Query: 830 QLLVALELSRLTMKTVKQNLWWAFGYNIVGIPIAAGVLLPVTGTMLTPSIAGALMGLSSI 889
+ A LS TM ++QNL++AF YN++G+P+AAGVL P+TG +L+P IA A M LSS+
Sbjct: 663 GIAKARRLSESTMSNIRQNLFFAFIYNVLGVPLAAGVLYPLTGLLLSPMIAAAAMALSSV 722
Query: 890 GVMANSLLLR 899
V+ N+L L+
Sbjct: 723 SVIINALRLK 732
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 342 bits (876), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 266/784 (33%), Positives = 393/784 (50%), Gaps = 95/784 (12%)
Query: 132 VGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAKVIPNWQRQLGEALAKH 191
V GMTC C S++ + S V VNL TETA + + E K
Sbjct: 8 VTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFI--------------RFDE---KR 50
Query: 192 LTSCGFKSSLRDMGTDNFFKVFETKMH-----EKRNRLKESGRGLAVSWALCAVCLVGHL 246
+ K + D+G + V + + E +R+K R L V+ A V L+ L
Sbjct: 51 IDFETIKRVIEDLG----YGVVDEQAAVSAEVEHLSRMK---RKLYVA-AFAGVLLL-FL 101
Query: 247 SHILGAKASWIHVFHSTGFHLSLSLFTLLGPGFQLILDGVKSLFKGAPNMNTLVGLGAVS 306
+H +I + + L ++L + G + +L + NM+ + +G +
Sbjct: 102 AH-------FISLPYEDFVQLLIALPAIFYSGSSIFKAAFSALRRRTLNMDVMYSMGVGA 154
Query: 307 SF--TVSSLAALVPKLGWKAFFEEPIMLIAFVLLGKNLEQRAKIKATSDMTGLLGILPSK 364
+F +V S A ++P+ +F+E ++L+AF+LLG+ LE RAK + + L+G+
Sbjct: 155 AFLASVLSTAGVLPR--EYSFYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKT 212
Query: 365 ARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAGRSTVDESSFTGEPLPV 424
A +V D K+ I VP + VGD ++V PG++IP DGVV G S VDES +GEP+PV
Sbjct: 213 A--VVIRDGKE--IAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPV 268
Query: 425 TKIPESEVAAGSINLNGTLTVEVRRPGGETAMGDIVRLVEEAQSREAPVQRLADQVSGHF 484
K EV +IN G L + R GGET + IV+LVE+A + P+QRLAD+V +F
Sbjct: 269 LKSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYF 328
Query: 485 TYGVIALSAATFVFWNLFGAHVLPTAIQYGGPVSLALQLSCSVLVVACPCALGLATPTAM 544
V+ ++ + F++W F AH P+ A +VLVVACPCA GLATPTA+
Sbjct: 329 IPTVLLVAISAFIYW-YFIAH---------APLLFAFTTLIAVLVVACPCAFGLATPTAL 378
Query: 545 LVXXXXXXXXXXXXXXXNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQ 604
V + LE V V+FDKTGTLT G+P VT +V
Sbjct: 379 TVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLV------------ 426
Query: 605 NPIHPLS--ETEILKFAAGVESNTVHPIGKAIVEAA-----EFSNCQNVKVADGTFIEEP 657
PL+ E E+L+ AA E + HPI +AIV+ A E + V+V
Sbjct: 427 ----PLNGDERELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVI-------A 475
Query: 658 GSGTVAIIEDRKVSVGTIDWLRSHGVDTSTFQEVEMEDLMNQ--SLVYVGVDNMLAGLIY 715
G G VA + VG + GV S E+ +E L + + V V + + G+I
Sbjct: 476 GEGVVA----DGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIA 531
Query: 716 VEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRF 775
V D +++ A V L GI V M++GD SAE ++ + + D V++ V P++K
Sbjct: 532 VSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL--DLVIAEVLPHQKSEE 589
Query: 776 INELQNDENVVAMVGDGINDAAALASSHIXXXXXXXXXXXXXXXXXXLMGNRLSQLLVAL 835
+ +LQ E VVA VGDGINDA ALA + + L+ + L ++ A+
Sbjct: 590 VKKLQAKE-VVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAI 648
Query: 836 ELSRLTMKTVKQNLWWAFGYNIVGIPIAAGVLLPVTGTMLTPSIAGALMGLSSIGVMANS 895
+LSR TM +KQN++WA YN++ IP AAG+L P+ G + P AG M +SS+ V+ANS
Sbjct: 649 QLSRKTMSKIKQNIFWALIYNVILIPAAAGLLYPIFGVVFRPEFAGLAMAMSSVSVVANS 708
Query: 896 LLLR 899
LLLR
Sbjct: 709 LLLR 712
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 328 bits (842), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 234/657 (35%), Positives = 345/657 (52%), Gaps = 57/657 (8%)
Query: 254 ASWIHVFHSTGFHLSLSLFTLLGPGFQLILDGVKSLFKGAPNMNTLVGLGAVSSF--TVS 311
A +I + + L ++L + G + +L + NM+ + +G ++F +V
Sbjct: 24 AHFISLPYEDFVQLLIALPAIFYSGSSIFKAAFSALRRRTLNMDVMYSMGVGAAFLASVL 83
Query: 312 SLAALVPKLGWKAFFEEPIMLIAFVLLGKNLEQRAKIKATSDMTGLLGILPSKARLLVDN 371
S A ++P+ +F+E ++L+AF+LLG+ LE RAK + + L+G+ A +V
Sbjct: 84 STAGVLPR--EYSFYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTA--VVIR 139
Query: 372 DAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAGRSTVDESSFTGEPLPVTKIPESE 431
D K+ I VP + VGD ++V PG++IP DGVV G S VDES +GEP+PV K E
Sbjct: 140 DGKE--IAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGDE 197
Query: 432 VAAGSINLNGTLTVEVRRPGGETAMGDIVRLVEEAQSREAPVQRLADQVSGHFTYGVIAL 491
V +IN G L + R GGET + IV+LVE+A + P+QRLAD+V +F V+ +
Sbjct: 198 VFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLV 257
Query: 492 SAATFVFWNLFGAHVLPTAIQYGGPVSLALQLSCSVLVVACPCALGLATPTAMLVXXXXX 551
+ + F++W F AH P+ A +VLVVACPCA GLATPTA+ V
Sbjct: 258 AISAFIYW-YFIAH---------APLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKG 307
Query: 552 XXXXXXXXXXNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLS 611
+ LE V V+FDKTGTLT G+P VT +V PL+
Sbjct: 308 AELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLV----------------PLN 351
Query: 612 --ETEILKFAAGVESNTVHPIGKAIVEAA-----EFSNCQNVKVADGTFIEEPGSGTVAI 664
E E+L+ AA E + HPI +AIV+ A E + V+V G G VA
Sbjct: 352 GDERELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVI-------AGEGVVA- 403
Query: 665 IEDRKVSVGTIDWLRSHGVDTSTFQEVEMEDLMNQ--SLVYVGVDNMLAGLIYVEDRIRD 722
+ VG + GV S E+ +E L + + V V + + G+I V D +++
Sbjct: 404 ---DGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKE 460
Query: 723 DAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQND 782
A V L GI V M++GD SAE ++ + + D V++ V P++K + +LQ
Sbjct: 461 SAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL--DLVIAEVLPHQKSEEVKKLQAK 518
Query: 783 ENVVAMVGDGINDAAALASSHIXXXXXXXXXXXXXXXXXXLMGNRLSQLLVALELSRLTM 842
E VVA VGDGINDA ALA + + L+ + L ++ A++LSR TM
Sbjct: 519 E-VVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTM 577
Query: 843 KTVKQNLWWAFGYNIVGIPIAAGVLLPVTGTMLTPSIAGALMGLSSIGVMANSLLLR 899
+KQN++WA YN++ IP AAG+L P+ G + P AG M +SS+ V+ANSLLLR
Sbjct: 578 SKIKQNIFWALIYNVILIPAAAGLLYPIFGVVFRPEFAGLAMAMSSVSVVANSLLLR 634
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 122 bits (305), Expect = 1e-27, Method: Composition-based stats.
Identities = 89/278 (32%), Positives = 139/278 (50%), Gaps = 21/278 (7%)
Query: 564 LEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLSETEILKFAAGVE 623
E+ + V+FDKTGTLT GR VT +V SE E+L+ AA +E
Sbjct: 7 FERAKDLQAVIFDKTGTLTEGRFGVTDIVGFNH--------------SEDELLQIAASLE 52
Query: 624 SNTVHPIGKAIVEAAEFSNCQNVKVADGTFIEEPGSGTVAIIEDRKVSVGTIDWLRSHGV 683
+ + HPI AIVE AE +V + F PG G I+ R+ V + ++R G+
Sbjct: 53 ARSEHPIAAAIVEEAEKRGFGLTEVEE--FRAIPGKGVEGIVNGRRYMVVSPGYIRELGI 110
Query: 684 DTSTFQEVEMEDLMNQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSG 743
T + VE +++V++ + ++G+I + DRIR ++ ++ L + GI ML+G
Sbjct: 111 KTD--ESVEKLKQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKCMMLTG 168
Query: 744 DKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALASSH 803
D + A++VA +G+ D + V P+EK + E+Q + V AMVGDG+NDA ALA +
Sbjct: 169 DNRFVAKWVAEELGL--DDYFAEVLPHEKAEKVKEVQQ-KYVTAMVGDGVNDAPALAQAD 225
Query: 804 IXXXXXXXXXXXXXXXXXXLMGNRLSQLLVALELSRLT 841
+ L+ N + +ELSR T
Sbjct: 226 VGIAIGAGTDVAVETADIVLVRNDPRDVAAIVELSRKT 263
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 119 bits (298), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 139/278 (50%), Gaps = 21/278 (7%)
Query: 564 LEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLSETEILKFAAGVE 623
E+ + V+FDKTGTLT GR VT +V SE E+L+ AA +E
Sbjct: 7 FERAKDLQAVIFDKTGTLTEGRFGVTDIVGFNH--------------SEDELLQIAASLE 52
Query: 624 SNTVHPIGKAIVEAAEFSNCQNVKVADGTFIEEPGSGTVAIIEDRKVSVGTIDWLRSHGV 683
+ + HPI AIVE AE +V + I PG G I+ R+ V + ++R G+
Sbjct: 53 ARSEHPIAAAIVEEAEKRGFGLTEVEEFRAI--PGKGVEGIVNGRRYMVVSPGYIRELGI 110
Query: 684 DTSTFQEVEMEDLMNQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSG 743
T + VE +++V++ + ++G+I + DRIR ++ ++ L + GI ML+G
Sbjct: 111 KTD--ESVEKLKQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKCMMLTG 168
Query: 744 DKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALASSH 803
D + A++VA +G+ D + V P+EK + E+Q + V AMVGDG+NDA ALA +
Sbjct: 169 DNRFVAKWVAEELGL--DDYFAEVLPHEKAEKVKEVQQ-KYVTAMVGDGVNDAPALAQAD 225
Query: 804 IXXXXXXXXXXXXXXXXXXLMGNRLSQLLVALELSRLT 841
+ L+ N + +ELSR T
Sbjct: 226 VGIAIGAGTDVAVETADIVLVRNDPRDVAAIVELSRKT 263
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 141/292 (48%), Gaps = 35/292 (11%)
Query: 562 NILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLSETEILKFAAG 621
+ LE V V+FDKTGTLT G+P VT +V P++ E E+L+ AA
Sbjct: 24 DALEVAEKVTAVIFDKTGTLTKGKPEVTDLV-------------PLNG-DERELLRLAAI 69
Query: 622 VESNTVHPIGKAIVEAA-----EFSNCQNVKVADGTFIEEPGSGTVAIIEDRKVSVGTID 676
E + HPI +AIV+ A E + V+V G G VA + VG
Sbjct: 70 AERRSEHPIAEAIVKKALEHGIELGEPEKVEVI-------AGEGVVA----DGILVGNKR 118
Query: 677 WLRSHGVDTSTFQEVEMEDLMNQ--SLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQ 734
+ GV S E+ +E L + + V V + + G+I V D +++ A V L
Sbjct: 119 LMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRM 178
Query: 735 GIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDGIN 794
GI V M++GD SAE ++ + + D V++ V P++K + +LQ E VVA VGDGIN
Sbjct: 179 GIKVGMITGDNWRSAEAISRELNL--DLVIAEVLPHQKSEEVKKLQAKE-VVAFVGDGIN 235
Query: 795 DAAALASSHIXXXXXXXXXXXXXXXXXXLMGNRLSQLLVALELSRLTMKTVK 846
DA ALA + + L+ + L ++ A++LSR TM +K
Sbjct: 236 DAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 140/292 (47%), Gaps = 35/292 (11%)
Query: 562 NILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLSETEILKFAAG 621
+ LE V V+FDKTGTLT G+P VT +V P++ E E+L+ AA
Sbjct: 24 DALEVAEKVTAVIFDKTGTLTKGKPEVTDLV-------------PLNG-DERELLRLAAI 69
Query: 622 VESNTVHPIGKAIVEAA-----EFSNCQNVKVADGTFIEEPGSGTVAIIEDRKVSVGTID 676
E + PI +AIV+ A E + V+V G G VA + VG
Sbjct: 70 AERRSEQPIAEAIVKKALEHGIELGEPEKVEVI-------AGEGVVA----DGILVGNKR 118
Query: 677 WLRSHGVDTSTFQEVEMEDLMNQ--SLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQ 734
+ GV S E+ +E L + + V V + + G+I V D +++ A V L
Sbjct: 119 LMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRM 178
Query: 735 GIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDGIN 794
GI V M++GD SAE ++ + + D V++ V P++K + +LQ E VVA VGDGIN
Sbjct: 179 GIKVGMITGDNWRSAEAISRELNL--DLVIAEVLPHQKSEEVKKLQAKE-VVAFVGDGIN 235
Query: 795 DAAALASSHIXXXXXXXXXXXXXXXXXXLMGNRLSQLLVALELSRLTMKTVK 846
DA ALA + + L+ + L ++ A++LSR TM +K
Sbjct: 236 DAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 102 bits (255), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 136/289 (47%), Gaps = 39/289 (13%)
Query: 562 NILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLS--ETEILKFA 619
+ LE V V+FDKTGTLT G+P VT +V PL+ E E+L+ A
Sbjct: 4 DALEVAEKVTAVIFDKTGTLTKGKPEVTDLV----------------PLNGDERELLRLA 47
Query: 620 AGVESNTVHPIGKAIVEAA-----EFSNCQNVKVADGTFIEEPGSGTVAIIEDRKVSVGT 674
A E + HPI +AIV+ A E + V+V G G VA + VG
Sbjct: 48 AIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVI-------AGEGVVA----DGILVGN 96
Query: 675 IDWLRSHGVDTSTFQEVEMEDLMNQ--SLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLS 732
GV S E+ +E L + + V V + + G+I V D +++ A V L
Sbjct: 97 KRLXEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELK 156
Query: 733 SQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDG 792
GI V ++GD SAE ++ + + D V++ V P++K + +LQ E VVA VGDG
Sbjct: 157 RXGIKVGXITGDNWRSAEAISRELNL--DLVIAEVLPHQKSEEVKKLQAKE-VVAFVGDG 213
Query: 793 INDAAALASSHIXXXXXXXXXXXXXXXXXXLMGNRLSQLLVALELSRLT 841
INDA ALA + + L+ + L ++ A++LSR T
Sbjct: 214 INDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKT 262
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 87.4 bits (215), Expect = 3e-17, Method: Composition-based stats.
Identities = 65/233 (27%), Positives = 113/233 (48%), Gaps = 43/233 (18%)
Query: 562 NILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLSETEILKFAAG 621
N+ EK ++T++FDKTGTLT G P+VT+ + ++ L +AA
Sbjct: 20 NVYEKIKEIDTIIFDKTGTLTYGTPIVTQFI------------------GDSLSLAYAAS 61
Query: 622 VESNTVHPIGKAIVEAAEFSNCQNVKVADGTFIEEPGSGTVAIIEDRKVSVGTIDWLRSH 681
VE+ + HPI KAIV+ A+ + ++V D F E G G I D+ +
Sbjct: 62 VEALSSHPIAKAIVKYAKEQGVKILEVKD--FKEISGIGVRGKISDKII----------- 108
Query: 682 GVDTSTFQEVEMEDLMNQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYML 741
EV+ + N VY+ + + + + D R + + L ++G+ + +L
Sbjct: 109 --------EVKKAENNNDIAVYINGEPIAS--FNISDVPRPNLKDYLEKLKNEGLKIIIL 158
Query: 742 SGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDGIN 794
SGDK++ + ++ + I + S + P +K R I +L+ + N V M+GDG+N
Sbjct: 159 SGDKEDKVKELSKELNI--QEYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 209
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 85.9 bits (211), Expect = 1e-16, Method: Composition-based stats.
Identities = 64/233 (27%), Positives = 113/233 (48%), Gaps = 43/233 (18%)
Query: 562 NILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLSETEILKFAAG 621
N+ EK ++T++F+KTGTLT G P+VT+ + ++ L +AA
Sbjct: 20 NVYEKIKEIDTIIFEKTGTLTYGTPIVTQFI------------------GDSLSLAYAAS 61
Query: 622 VESNTVHPIGKAIVEAAEFSNCQNVKVADGTFIEEPGSGTVAIIEDRKVSVGTIDWLRSH 681
VE+ + HPI KAIV+ A+ + ++V D F E G G I D+ +
Sbjct: 62 VEALSSHPIAKAIVKYAKEQGVKILEVKD--FKEISGIGVRGKISDKII----------- 108
Query: 682 GVDTSTFQEVEMEDLMNQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYML 741
EV+ + N VY+ + + + + D R + + L ++G+ + +L
Sbjct: 109 --------EVKKAENNNDIAVYINGEPIAS--FNISDVPRPNLKDYLEKLKNEGLKIIIL 158
Query: 742 SGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDGIN 794
SGDK++ + ++ + I + S + P +K R I +L+ + N V M+GDG+N
Sbjct: 159 SGDKEDKVKELSKELNI--QEYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 209
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 85.5 bits (210), Expect = 1e-16, Method: Composition-based stats.
Identities = 64/233 (27%), Positives = 113/233 (48%), Gaps = 43/233 (18%)
Query: 562 NILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLSETEILKFAAG 621
N+ EK ++T++F+KTGTLT G P+VT+ + ++ L +AA
Sbjct: 20 NVYEKIKEIDTIIFNKTGTLTYGTPIVTQFI------------------GDSLSLAYAAS 61
Query: 622 VESNTVHPIGKAIVEAAEFSNCQNVKVADGTFIEEPGSGTVAIIEDRKVSVGTIDWLRSH 681
VE+ + HPI KAIV+ A+ + ++V D F E G G I D+ +
Sbjct: 62 VEALSSHPIAKAIVKYAKEQGVKILEVKD--FKEISGIGVRGKISDKII----------- 108
Query: 682 GVDTSTFQEVEMEDLMNQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYML 741
EV+ + N VY+ + + + + D R + + L ++G+ + +L
Sbjct: 109 --------EVKKAENNNDIAVYINGEPIAS--FNISDVPRPNLKDYLEKLKNEGLKIIIL 158
Query: 742 SGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDGIN 794
SGDK++ + ++ + I + S + P +K R I +L+ + N V M+GDG+N
Sbjct: 159 SGDKEDKVKELSKELNI--QEYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 209
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Query: 368 LVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAGRSTVDESSFTGEPLPVTKI 427
+V D K+ I VP + VGD ++V PG++IP DGVV G S VDES +GEP+PV K
Sbjct: 15 VVIRDGKE--IAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKS 72
Query: 428 PESEVAAGSINLNGTLTVEVRRPGGETAMGDIVRLVEEA 466
EV +IN G L + R GGET + IV+LVE+A
Sbjct: 73 KGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDA 111
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 54/89 (60%)
Query: 379 EVPCNSLHVGDHIVVLPGDRIPADGVVRAGRSTVDESSFTGEPLPVTKIPESEVAAGSIN 438
+V + GD I V+PG + P DG V G S VDES TGE +PV K P S V AGSIN
Sbjct: 36 QVDVELVQRGDIIKVVPGGKFPVDGRVIEGHSMVDESLITGEAMPVAKKPGSTVIAGSIN 95
Query: 439 LNGTLTVEVRRPGGETAMGDIVRLVEEAQ 467
NG+L + G +T + IV+LVEEAQ
Sbjct: 96 QNGSLLICATHVGADTTLSQIVKLVEEAQ 124
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 119/495 (24%), Positives = 184/495 (37%), Gaps = 122/495 (24%)
Query: 388 GDHIVVLPGDRIPADGVVRAGRS-TVDESSFTGEPLPVTKIPESEVAAGSINLNGTLTVE 446
GD + + GD IPAD + G VD+S+ TGE LPVTK P EV +GS G +
Sbjct: 151 GDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHPGQEVFSGSTCKQGEIEAV 210
Query: 447 VRRPGGETAMGDIVRLVEEAQSREAPVQRLADQVSGHFTYGVIALSAATFVFWNLFGAHV 506
V G T G LV+ +QV GHF + A+ F ++ V
Sbjct: 211 VIATGVHTFFGKAAHLVDS-----------TNQV-GHFQKVLTAI--GNFCICSIAIGMV 256
Query: 507 LPTAIQYGGPVSL-----ALQLSCSVLVVACPCALGLATPTAMLVXXXXXXXXXXXXXXX 561
+ + Y P+ + +L+ P A+ M +
Sbjct: 257 IEIIVMY--PIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRM 314
Query: 562 NILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTS--------------------------- 594
+E+ A ++ + DKTGTLT+ + V K +
Sbjct: 315 TAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFAAMASRVENQDAI 374
Query: 595 -----GSLTDPNSKQN--------PIHPLSETEILKFAAGVESNTVHPIGKA----IVEA 637
G L DP + P +P+ + L + G S H + K I+E
Sbjct: 375 DAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDG--SGNWHRVSKGAPEQILEL 432
Query: 638 AEFSNCQNVKVADGTFIEEPGSGTVAIIEDRKVSVGTIDWLRSHGVDTSTFQEVEMEDLM 697
A+ SN + KV ++II D+ G LRS V E E
Sbjct: 433 AKASNDLSKKV-------------LSII-DKYAERG----LRSLAVARQVVPEKTKES-- 472
Query: 698 NQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDK----KNSAEYV- 752
G GL+ + D R D+A + + G+ V M++GD+ K + +
Sbjct: 473 ------PGAPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLG 526
Query: 753 -----------------ASLVGIPKDKVL------SGVKPNEKKRFINELQNDENVVAMV 789
A+L IP ++++ +GV P K + +LQ +++V M
Sbjct: 527 MGTNMYPSSALLGTHKDANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMT 586
Query: 790 GDGINDAAALASSHI 804
GDG+NDA AL + I
Sbjct: 587 GDGVNDAPALKKADI 601
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 124/293 (42%), Gaps = 33/293 (11%)
Query: 330 IMLIAFVLLGKNLEQRAKIKATSDMTGLLGILPSKARLLVDNDAKDSIIEVPCNSLHVGD 389
+ LIA V++ + K+T+ + ++P +A ++ D D ++ + L VGD
Sbjct: 144 LALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDK----FQINADQLVVGD 199
Query: 390 HIVVLPGDRIPAD-GVVRAGRSTVDESSFTGEPLPVTKIP----ESEVAAGSINLNGTLT 444
+ + GDR+PAD +++A VD SS TGE P T+ P ES + +I T+
Sbjct: 200 LVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFSTMC 259
Query: 445 VE------VRRPGGETAMGDIVRLVEEAQSREAPVQRLADQVSGHFTYGVIALSAATFVF 498
+E V G T +G I L ++ + P+ A ++ HF + L+
Sbjct: 260 LEGTAQGLVVNTGDRTIIGRIASLASGVENEKTPI---AIEIE-HFVDIIAGLAI----- 310
Query: 499 WNLFGAHVLPTAIQYGGPVSLALQLSCSVLVVACPCALGLATPTAML-VXXXXXXXXXXX 557
LFGA A+ G A+ +++V P L LAT T L +
Sbjct: 311 --LFGATFFIVAMCIGYTFLRAMVFFMAIVVAYVPEGL-LATVTVCLSLTAKRLASKNCV 367
Query: 558 XXXXNILEKFAMVNTVVFDKTGTLTIGRPVVTKV-----VTSGSLTDPNSKQN 605
+E + + DKTGTLT R V+ + + S T+ S Q
Sbjct: 368 VKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHSADTTEDQSGQT 420
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 747 NSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALASSHI-X 805
+ +E V +L P + V + P +K + Q +VA+ GDG+ND+ AL + I
Sbjct: 684 DPSELVEALRTHP-EMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGV 742
Query: 806 XXXXXXXXXXXXXXXXXLMGNRLSQLLVALELSRLTMKTVKQNLWWAFGYNI 857
L+ + + ++ +E RL +K+++ + NI
Sbjct: 743 AMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNI 794
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 125/551 (22%), Positives = 196/551 (35%), Gaps = 88/551 (15%)
Query: 347 KIKATSDMTGLLGILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVR 406
+ +A S + L L KA +L D K+ IE P + GD + V G IPADG +
Sbjct: 162 EFQAGSIVDELKKTLALKAVVLRDGTLKE--IEAP--EVVPGDILQVEEGTIIPADGRIV 217
Query: 407 AGRS--TVDESSFTGEPLPVTKIPESEVAAGSINLNGTLTVEVRRPGGETAMGDIVRLVE 464
+ VD+S+ TGE L V K +V A S G V + G T +G
Sbjct: 218 TDDAFLQVDQSALTGESLAVDKHKGDQVFASSAVKRGEAFVVITATGDNTFVG------- 270
Query: 465 EAQSREAPVQRLADQVSGHFT-----YGVIALSAATFVFWNLFGAHVLPTAIQYGGPVSL 519
R A + A SGHFT G I L F V ++ P+
Sbjct: 271 ----RAAALVNAASGGSGHFTEVLNGIGTILLILVIFTL-----LIVWVSSFYRSNPIVQ 321
Query: 520 ALQLSCSVLVVACPCALGLATPTAMLVXXXXXXXXXXXXXXXNILEKFAMVNTVVFDKTG 579
L+ + ++ ++ P L T M V + +E A V + DKTG
Sbjct: 322 ILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVEILCSDKTG 381
Query: 580 TLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLSETEILKFAAGVESNTVHPIGKAIVEAAE 639
TLT + SL DP + + P AA + + I KA +++ +
Sbjct: 382 TLTKNKL---------SLHDPYTVAG-VDPEDLMLTACLAASRKKKGIDAIDKAFLKSLK 431
Query: 640 F-----SNCQNVKVADGTFIEEPGSGTVAIIEDRK------VSVGTIDWLRSHGVDTSTF 688
+ S KV + VA++E + V + L++ D
Sbjct: 432 YYPRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPLFVLKTVEEDHPIP 491
Query: 689 QEVE------MEDLMNQSLVYVGVDNM-------LAGLIYVEDRIRDDAAHVVNSLSSQG 735
+EV+ + + + +GV + G++ D R D V + G
Sbjct: 492 EEVDQAYKNKVAEFATRGFRSLGVARKRGEGSWEILGIMPCMDPPRHDTYKTVCEAKTLG 551
Query: 736 IGVYMLSGDKKNSAEYVASLVGI------------------PKDKVLSGVK--------- 768
+ + ML+GD A + +G+ P +V V+
Sbjct: 552 LSIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGDMPGSEVYDFVEAADGFAEVF 611
Query: 769 PNEKKRFINELQNDENVVAMVGDGINDAAALASSHIXXXXXXXXXXXXXXXXXXLMGNRL 828
P K + LQ +VAM GDG+NDA +L + + L
Sbjct: 612 PQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEGSSDAARSAADIVFLAPGL 671
Query: 829 SQLLVALELSR 839
++ AL+ SR
Sbjct: 672 GAIIDALKTSR 682
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 130/331 (39%), Gaps = 31/331 (9%)
Query: 287 KSLFKGAPNMNTLVGLGAVSSFTVSSLAALVPKLGWKAFFEEPIMLIAFVLLGKNLEQRA 346
+ LF G + L+ +GA+ F + A + ++L A V++
Sbjct: 69 RQLFGG---FSMLLWIGAILCFLAYGIQAATEEEPQNDNLYLGVVLSAVVIITGCFSYYQ 125
Query: 347 KIKATSDMTGLLGILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPAD-GVV 405
+ K++ M ++P +A L++ N K SI + VGD + V GDRIPAD ++
Sbjct: 126 EAKSSKIMESFKNMVPQQA-LVIRNGEKMSI---NAEEVVVGDLVEVKGGDRIPADLRII 181
Query: 406 RAGRSTVDESSFTGEPLPVTKIPE---------SEVAAGSIN-LNGTLTVEVRRPGGETA 455
A VD SS TGE P T+ P+ +A S N + GT V G T
Sbjct: 182 SANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTV 241
Query: 456 MGDIVRLVEEAQSREAPVQRLADQVSGHFTYGVIALSAATFVFWNLFGAHVLPTAIQYGG 515
MG I L + + P+ + H GV +F +L + A+ +
Sbjct: 242 MGRIATLASGLEGGQTPIAAEIEHFI-HIITGVAVFLGVSFFILSLILEYTWLEAVIF-- 298
Query: 516 PVSLALQLSCSVLVVACPCALGLATPTAML-VXXXXXXXXXXXXXXXNILEKFAMVNTVV 574
++V P L LAT T L + +E +T+
Sbjct: 299 --------LIGIIVANVPEGL-LATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTIC 349
Query: 575 FDKTGTLTIGRPVVTKVVTSGSLTDPNSKQN 605
DKTGTLT R V + + + + ++ +N
Sbjct: 350 SDKTGTLTQNRMTVAHMWSDNQIHEADTTEN 380
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 85/244 (34%), Gaps = 67/244 (27%)
Query: 706 VDNM-LAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGI------ 758
+DN+ GLI + D R V S GI V M++GD +A+ +A VGI
Sbjct: 555 LDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNE 614
Query: 759 -----------------PKDK----------------------------VLSGVKPNEKK 773
P+D V + P +K
Sbjct: 615 TVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKL 674
Query: 774 RFINELQNDENVVAMVGDGINDAAALASSHI-XXXXXXXXXXXXXXXXXXLMGNRLSQLL 832
+ Q +VA+ GDG+ND+ A + I L+ + + ++
Sbjct: 675 IIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIV 734
Query: 833 VALELSRLTMKTVKQNLWWAFGYNIVGIP-----IAAGVLLPV---------TGTMLTPS 878
+E RL +K+++ + NI I I A + LP+ GT + P+
Sbjct: 735 TGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPA 794
Query: 879 IAGA 882
I+ A
Sbjct: 795 ISLA 798
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 85/218 (38%), Gaps = 45/218 (20%)
Query: 684 DTSTFQEVEMEDLMNQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSG 743
D+S F E E + L +VGV ML D R + + GI V M++G
Sbjct: 580 DSSRFMEYETD------LTFVGVVGML-------DPPRKEVMGSIQLCRDAGIRVIMITG 626
Query: 744 DKKNSAEYVASLVGI------PKDKVLSG-----------------------VKPNEKKR 774
D K +A + +GI D+ +G V+P+ K +
Sbjct: 627 DNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSK 686
Query: 775 FINELQNDENVVAMVGDGINDAAALASSHIXXXXXXXXXXXXXXXXXXLMGNRLSQLLVA 834
+ LQ+ + + AM GDG+NDA AL + I L + S ++ A
Sbjct: 687 IVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAA 746
Query: 835 LELSRLTMKTVKQNLWWAFGYN---IVGIPIAAGVLLP 869
+E R +KQ + + N +V I + A + LP
Sbjct: 747 VEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLP 784
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 374 KDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAGRST---VDESSFTGEPLPVTKIPE 429
+ S+ + + GD + V GD++PAD + + +ST VD+S TGE + V K E
Sbjct: 134 RKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTE 192
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 85/218 (38%), Gaps = 45/218 (20%)
Query: 684 DTSTFQEVEMEDLMNQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSG 743
D+S F E E + L +VGV ML D R + + GI V M++G
Sbjct: 581 DSSRFMEYETD------LTFVGVVGML-------DPPRKEVMGSIQLCRDAGIRVIMITG 627
Query: 744 DKKNSAEYVASLVGI------PKDKVLSG-----------------------VKPNEKKR 774
D K +A + +GI D+ +G V+P+ K +
Sbjct: 628 DNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSK 687
Query: 775 FINELQNDENVVAMVGDGINDAAALASSHIXXXXXXXXXXXXXXXXXXLMGNRLSQLLVA 834
+ LQ+ + + AM GDG+NDA AL + I L + S ++ A
Sbjct: 688 IVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAA 747
Query: 835 LELSRLTMKTVKQNLWWAFGYN---IVGIPIAAGVLLP 869
+E R +KQ + + N +V I + A + LP
Sbjct: 748 VEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLP 785
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 374 KDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAGRST---VDESSFTGEPLPVTKIPE 429
+ S+ + + GD + V GD++PAD + + +ST VD+S TGE + V K E
Sbjct: 135 RKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTE 193
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 85/218 (38%), Gaps = 45/218 (20%)
Query: 684 DTSTFQEVEMEDLMNQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSG 743
D+S F E E + L +VGV ML D R + + GI V M++G
Sbjct: 580 DSSRFMEYETD------LTFVGVVGML-------DPPRKEVMGSIQLCRDAGIRVIMITG 626
Query: 744 DKKNSAEYVASLVGI------PKDKVLSG-----------------------VKPNEKKR 774
D K +A + +GI D+ +G V+P+ K +
Sbjct: 627 DNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSK 686
Query: 775 FINELQNDENVVAMVGDGINDAAALASSHIXXXXXXXXXXXXXXXXXXLMGNRLSQLLVA 834
+ LQ+ + + AM GDG+NDA AL + I L + S ++ A
Sbjct: 687 IVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAA 746
Query: 835 LELSRLTMKTVKQNLWWAFGYN---IVGIPIAAGVLLP 869
+E R +KQ + + N +V I + A + LP
Sbjct: 747 VEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLP 784
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 374 KDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAGRST---VDESSFTGEPLPVTKIPE 429
+ S+ + + GD + V GD++PAD + + +ST VD+S TGE + V K E
Sbjct: 134 RKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTE 192
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 84/218 (38%), Gaps = 45/218 (20%)
Query: 684 DTSTFQEVEMEDLMNQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSG 743
D++ F E E + L +VGV ML D R + + GI V M++G
Sbjct: 579 DSTKFMEYETD------LTFVGVVGML-------DPPRKEVMGSIQLCRDAGIRVIMITG 625
Query: 744 DKKNSAEYVASLVGI------PKDKVLSG-----------------------VKPNEKKR 774
D K +A + +GI D+ +G V+P K +
Sbjct: 626 DNKGTAIAICRRIGIFGENEDVADRAYTGREFDDLPLAEQREACRRACCFARVEPTHKSK 685
Query: 775 FINELQNDENVVAMVGDGINDAAALASSHIXXXXXXXXXXXXXXXXXXLMGNRLSQLLVA 834
+ LQ+ + + AM GDG+NDA AL + I L + S ++ A
Sbjct: 686 IVEYLQSFDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAA 745
Query: 835 LELSRLTMKTVKQNLWWAFGYN---IVGIPIAAGVLLP 869
+E R +KQ + + N +V I + A + LP
Sbjct: 746 VEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLP 783
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 374 KDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAGRST---VDESSFTGEPLPVTKIPE 429
+ S+ + + GD + V GD++PAD + +ST VD+S TGE + V K E
Sbjct: 134 RKSVQRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTE 192
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 129/331 (38%), Gaps = 31/331 (9%)
Query: 287 KSLFKGAPNMNTLVGLGAVSSFTVSSLAALVPKLGWKAFFEEPIMLIAFVLLGKNLEQRA 346
+ LF G + L+ +GA+ F + A + ++L A V++
Sbjct: 63 RQLFGG---FSMLLWIGAILCFLAYGIQAATEEEPQNDNLYLGVVLSAVVIITGCFSYYQ 119
Query: 347 KIKATSDMTGLLGILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPAD-GVV 405
+ K++ M ++P +A L++ N K SI + VGD + V GDRIPAD ++
Sbjct: 120 EAKSSKIMESFKNMVPQQA-LVIRNGEKMSI---NAEEVVVGDLVEVKGGDRIPADLRII 175
Query: 406 RAGRSTVDESSFTGEPLPVTKIPE---------SEVAAGSIN-LNGTLTVEVRRPGGETA 455
A VD SS TGE P T+ P+ +A S N + GT V G T
Sbjct: 176 SANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTV 235
Query: 456 MGDIVRLVEEAQSREAPVQRLADQVSGHFTYGVIALSAATFVFWNLFGAHVLPTAIQYGG 515
MG I L + + P+ + H GV +F +L + A+ +
Sbjct: 236 MGRIATLASGLEGGQTPIAAEIEHFI-HIITGVAVFLGVSFFILSLILEYTWLEAVIF-- 292
Query: 516 PVSLALQLSCSVLVVACPCALGLATPTAML-VXXXXXXXXXXXXXXXNILEKFAMVNTVV 574
++V P L LAT T L + +E +T+
Sbjct: 293 --------LIGIIVANVPEGL-LATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTIC 343
Query: 575 FDKTGTLTIGRPVVTKVVTSGSLTDPNSKQN 605
KTGTLT R V + + + + ++ +N
Sbjct: 344 SXKTGTLTQNRMTVAHMWSDNQIHEADTTEN 374
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 85/244 (34%), Gaps = 67/244 (27%)
Query: 706 VDNM-LAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGI------ 758
+DN+ GLI + D R V S GI V M++GD +A+ +A VGI
Sbjct: 549 LDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNE 608
Query: 759 -----------------PKDK----------------------------VLSGVKPNEKK 773
P+D V + P +K
Sbjct: 609 TVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKL 668
Query: 774 RFINELQNDENVVAMVGDGINDAAALASSHI-XXXXXXXXXXXXXXXXXXLMGNRLSQLL 832
+ Q +VA+ GDG+ND+ A + I L+ + + ++
Sbjct: 669 IIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIV 728
Query: 833 VALELSRLTMKTVKQNLWWAFGYNIVGIP-----IAAGVLLPV---------TGTMLTPS 878
+E RL +K+++ + NI I I A + LP+ GT + P+
Sbjct: 729 TGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPA 788
Query: 879 IAGA 882
I+ A
Sbjct: 789 ISLA 792
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 124/331 (37%), Gaps = 31/331 (9%)
Query: 287 KSLFKGAPNMNTLVGLGAVSSFTVSSLAALVPKLGWKAFFEEPIMLIAFVLLGKNLEQRA 346
+ LF G + L+ +GA+ F + A ++L V++
Sbjct: 99 RQLFGG---FSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYYQ 155
Query: 347 KIKATSDMTGLLGILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPAD-GVV 405
+ K++ M ++P +A LV D + S I + GD + V GDRIPAD ++
Sbjct: 156 EAKSSRIMDSFKNMVPQQA--LVIRDGEKSTINA--EFVVAGDLVEVKGGDRIPADLRII 211
Query: 406 RAGRSTVDESSFTGEPLPVTKIPE---------SEVAAGSIN-LNGTLTVEVRRPGGETA 455
A VD SS TGE P T+ PE +A S N + GT V G T
Sbjct: 212 SAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTGDRTV 271
Query: 456 MGDIVRLVEEAQSREAPVQRLADQVSGHFTYGVIALSAATFVFWNLFGAHVLPTAIQYGG 515
MG I L + P+ + T + L + F+ + G L I G
Sbjct: 272 MGRIATLASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSLILGYSWLEAVIFLIG 331
Query: 516 PVSLALQLSCSVLVVACPCALGLATPTAML-VXXXXXXXXXXXXXXXNILEKFAMVNTVV 574
++V P L LAT T L + +E +T+
Sbjct: 332 -----------IIVANVPEGL-LATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTIC 379
Query: 575 FDKTGTLTIGRPVVTKVVTSGSLTDPNSKQN 605
DKTGTLT R V + + + ++ +N
Sbjct: 380 SDKTGTLTQNRMTVAHMWFDNQIHEADTTEN 410
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 61/151 (40%), Gaps = 15/151 (9%)
Query: 745 KKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALASSHI 804
K S E + ++ + V + P +K + Q +VA+ GDG+ND+ AL + I
Sbjct: 676 KDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADI 735
Query: 805 -XXXXXXXXXXXXXXXXXXLMGNRLSQLLVALELSRLTMKTVKQNLWWAFGYNI------ 857
L+ + + ++ +E RL +K+++ + NI
Sbjct: 736 GVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPF 795
Query: 858 -------VGIPIAAGVLLPVT-GTMLTPSIA 880
V +P+ +L + GT + P+I+
Sbjct: 796 LVFIIGNVPLPLGTVTILCIDLGTDMVPAIS 826
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINE 778
++++ A V L GI V ++GD SAE ++ + + D V++ V P++K + +
Sbjct: 22 KLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNL--DLVIAEVLPHQKSEEVKK 79
Query: 779 LQNDENVVAMVGDGINDAAALASSHI 804
LQ E VVA VGDGINDA ALA + +
Sbjct: 80 LQAKE-VVAFVGDGINDAPALAQADL 104
>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
Bacillus Subtilis Copa
Length = 147
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 128 IILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIV 168
I + V GMTC CAA +++ L+ P V+ A+VNL TET+ V
Sbjct: 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETSNV 48
Score = 33.9 bits (76), Expect = 0.48, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 130 LDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIV 168
D+ GMTC CA +++ L V++A VN ET V
Sbjct: 78 FDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTV 116
>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
P- Type Atpase Copa From Bacillus Subtilis
Length = 151
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 128 IILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIV 168
I + V GMTC CAA +++ L+ P V+ A+VNL TET V
Sbjct: 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNV 48
Score = 33.9 bits (76), Expect = 0.46, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 130 LDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIV 168
D+ GMTC CA +++ L V++A VN ET V
Sbjct: 78 FDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTV 116
>pdb|1OPZ|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ3|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ6|A Chain A, Solution Structure Of Copper-s46v Copa From Bacillus
Subtilis
Length = 76
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 128 IILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIV 168
I + V GMTC CAA +++ L+ P V+ A+VNL TET V
Sbjct: 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNV 48
>pdb|2KT2|A Chain A, Structure Of Nmera, The N-Terminal Hma Domain Of Tn501
Mercuric Reductase
pdb|2KT3|A Chain A, Structure Of Hg-Nmera, Hg(Ii) Complex Of The N-Terminal
Domain Of Tn501 Mercuric Reductase
Length = 69
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 130 LDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAKVIPNWQRQLGEALA 189
L + GMTC CAA VK LE P V SA V+ TA + ++P +AL
Sbjct: 4 LKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTA------QLAIVPGTSP---DALT 54
Query: 190 KHLTSCGFKSSLRD 203
+ G+K++L D
Sbjct: 55 AAVAGLGYKATLAD 68
>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Coppper(I) Atpase Pacs In Its Apo Form
Length = 73
Score = 38.1 bits (87), Expect = 0.025, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 125 SDVIILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIV 168
+ I L + GM C CA+S++R + P V S VN E A+V
Sbjct: 2 AQTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVV 45
>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
Length = 71
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 125 SDVIILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIV 168
+ I L + GM C CA+S++R + P V S VN E A+V
Sbjct: 2 AQTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVV 45
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 37.0 bits (84), Expect = 0.050, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 125 SDVIILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIV 168
+ I L + GM C CA+S++R + P V S VN E A+V
Sbjct: 1 AQTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVV 44
>pdb|2LDI|A Chain A, Nmr Solution Structure Of Ziaan Sub Mutant
Length = 71
Score = 36.2 bits (82), Expect = 0.079, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 130 LDVGGMTCGGCAASVKRILESQPQVSSASVNLTT 163
+ VGGM C CA+S++R LE V+ ASV + T
Sbjct: 7 MQVGGMRCAACASSIERALERLKGVAEASVTVAT 40
>pdb|1KQK|A Chain A, Solution Structure Of The N-Terminal Domain Of A Potential
Copper-Translocating P-Type Atpase From Bacillus
Subtilis In The Cu(I)loaded State
Length = 80
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 130 LDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIV 168
D+ GMTC CA +++ L V++A VN ET V
Sbjct: 7 FDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTV 45
>pdb|2VOY|A Chain A, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
pdb|1JWW|A Chain A, Nmr Characterization Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis
Length = 80
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 130 LDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIV 168
D+ GMTC CA +++ L V++A VN ET V
Sbjct: 7 FDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTV 45
>pdb|2VOY|J Chain J, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 118
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 612 ETEILKFAAGVESNTVHPIGKAIVEAA-----EFSNCQNVKVADGTFIEEPGSGTVAIIE 666
E E+L+ AA E + HPI +AIV+ A E + V+V G G VA
Sbjct: 15 ERELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVI-------AGEGVVA--- 64
Query: 667 DRKVSVGTIDWLRSHGVDTSTFQEVEMEDLMNQ--SLVYVGVDNMLAGLIYVED 718
+ VG GV S E+ +E L + + V V + + G+I V D
Sbjct: 65 -DGILVGNKRLXEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSD 117
>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
pdb|1FBS|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
Length = 90
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 162 TTETAIVWPVS-KAKVIPNWQRQLGEALAKHLTSCGFKSSLRDMGTDNFFKVFETK 216
+ E I W S ++ V+PN +R + E LAK+ F S +R + + KV + K
Sbjct: 15 SNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLNMYGWHKVQDVK 70
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 124 SSDVIILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIV 168
++ + L V GMTC C +VK+ + VS V T A+V
Sbjct: 1 ATQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVV 45
>pdb|1AFI|A Chain A, Structure Of The Reduced Form Of Merp, The Periplasmic
Protein From The Bacterial Mercury Detoxification
System, Nmr, 20 Structures
pdb|1AFJ|A Chain A, Structure Of The Mercury-Bound Form Of Merp, The
Periplasmic Protein From The Bacterial Mercury
Detoxification System, Nmr, 20 Structures
pdb|2HQI|A Chain A, Nmr Solution Structure Of The Oxidized Form Of Merp, 14
Structures
Length = 72
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Query: 124 SSDVIILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIV-WPVSKAKVIPNWQR 182
++ + L V GMTC C +VK+ L VS V A+V + +KA V
Sbjct: 1 ATQTVTLAVPGMTCAACPITVKKALSKVEGVSKVDVGFEKREAVVTFDDTKASV------ 54
Query: 183 QLGEALAKHLTSCGFKSSLR 202
+ L K G+ SS++
Sbjct: 55 ---QKLTKATADAGYPSSVK 71
>pdb|2G9O|A Chain A, Solution Structure Of The Apo Form Of The Third Metal-
Binding Domain Of Atp7a Protein (Menkes Disease Protein)
pdb|2GA7|A Chain A, Solution Structure Of The Copper(I) Form Of The Third
Metal- Binding Domain Of Atp7a Protein (Menkes Disease
Protein)
Length = 90
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 132 VGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAKVIPNWQRQLGEALAKH 191
+ GM C C ++++ L + VSS V+L +AIV + + V P R+ EA++
Sbjct: 9 IDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVV-YNASSVTPESLRKAIEAVSPG 67
Query: 192 LTSCGFKSSLRDMG 205
L S + G
Sbjct: 68 LYRVSITSEVEIEG 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,859,724
Number of Sequences: 62578
Number of extensions: 889840
Number of successful extensions: 2696
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2577
Number of HSP's gapped (non-prelim): 65
length of query: 932
length of database: 14,973,337
effective HSP length: 108
effective length of query: 824
effective length of database: 8,214,913
effective search space: 6769088312
effective search space used: 6769088312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)