Query 002354
Match_columns 932
No_of_seqs 562 out of 3399
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 22:09:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002354.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002354hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2217 ZntA Cation transport 100.0 3E-138 6E-143 1226.1 82.6 707 126-901 2-710 (713)
2 KOG0207 Cation transport ATPas 100.0 2E-135 3E-140 1172.3 61.0 775 126-932 146-939 (951)
3 PRK10671 copA copper exporting 100.0 2E-115 4E-120 1083.2 85.5 724 126-900 99-829 (834)
4 PRK11033 zntA zinc/cadmium/mer 100.0 9E-113 2E-117 1038.9 86.1 687 125-901 52-739 (741)
5 TIGR01511 ATPase-IB1_Cu copper 100.0 7E-101 1E-105 911.3 69.0 558 277-880 1-562 (562)
6 TIGR01512 ATPase-IB2_Cd heavy 100.0 2.9E-92 6.3E-97 834.7 65.7 533 296-899 1-535 (536)
7 TIGR01525 ATPase-IB_hvy heavy 100.0 6.7E-92 1.5E-96 836.7 69.0 551 296-898 1-556 (556)
8 TIGR01647 ATPase-IIIA_H plasma 100.0 1.4E-89 3E-94 838.1 66.9 507 328-862 57-613 (755)
9 PRK14010 potassium-transportin 100.0 1.9E-87 4.2E-92 793.5 64.1 493 332-858 72-578 (673)
10 PRK10517 magnesium-transportin 100.0 2.6E-87 5.6E-92 827.2 66.5 559 327-915 123-763 (902)
11 PRK01122 potassium-transportin 100.0 1.1E-86 2.4E-91 787.8 68.3 512 328-872 68-600 (679)
12 TIGR01524 ATPase-IIIB_Mg magne 100.0 5.7E-87 1.2E-91 824.9 67.5 557 327-915 89-728 (867)
13 PRK15122 magnesium-transportin 100.0 1E-86 2.2E-91 823.3 66.4 568 326-926 111-773 (903)
14 TIGR01517 ATPase-IIB_Ca plasma 100.0 3.8E-85 8.3E-90 818.1 64.0 586 329-925 131-806 (941)
15 TIGR01522 ATPase-IIA2_Ca golgi 100.0 3.2E-84 6.9E-89 805.1 66.5 571 336-926 90-756 (884)
16 TIGR01497 kdpB K+-transporting 100.0 1.3E-83 2.9E-88 759.6 65.7 517 325-872 64-601 (675)
17 KOG0202 Ca2+ transporting ATPa 100.0 3E-84 6.5E-89 737.4 44.7 588 326-927 78-817 (972)
18 TIGR01106 ATPase-IIC_X-K sodiu 100.0 1.7E-80 3.6E-85 778.2 67.5 578 325-922 103-819 (997)
19 COG0474 MgtA Cation transport 100.0 1.5E-81 3.3E-86 778.3 51.6 567 337-925 114-777 (917)
20 TIGR01523 ATPase-IID_K-Na pota 100.0 6.4E-80 1.4E-84 770.6 66.4 583 326-927 81-890 (1053)
21 TIGR01116 ATPase-IIA1_Ca sarco 100.0 2.7E-78 5.8E-83 753.7 65.2 588 327-925 37-767 (917)
22 KOG0204 Calcium transporting A 100.0 1.6E-80 3.6E-85 705.5 38.2 556 361-927 218-878 (1034)
23 TIGR01494 ATPase_P-type ATPase 100.0 1.1E-78 2.4E-83 716.5 53.7 477 333-866 3-484 (499)
24 TIGR01657 P-ATPase-V P-type AT 100.0 2.5E-76 5.4E-81 745.2 59.7 567 324-915 191-924 (1054)
25 TIGR01652 ATPase-Plipid phosph 100.0 8.8E-66 1.9E-70 651.3 50.4 616 277-915 12-900 (1057)
26 KOG0203 Na+/K+ ATPase, alpha s 100.0 6.4E-68 1.4E-72 602.2 16.4 610 296-927 96-846 (1019)
27 KOG0208 Cation transport ATPas 100.0 8.7E-65 1.9E-69 584.8 40.4 568 323-916 211-977 (1140)
28 COG2216 KdpB High-affinity K+ 100.0 7E-62 1.5E-66 527.3 42.1 561 280-872 15-602 (681)
29 KOG0205 Plasma membrane H+-tra 100.0 3.2E-62 6.8E-67 539.9 26.4 498 331-858 102-659 (942)
30 PLN03190 aminophospholipid tra 100.0 2.3E-58 5E-63 577.9 56.8 596 279-898 100-986 (1178)
31 KOG0209 P-type ATPase [Inorgan 100.0 1.4E-52 3.1E-57 473.4 35.1 514 344-878 235-970 (1160)
32 KOG0210 P-type ATPase [Inorgan 100.0 5.3E-47 1.1E-51 421.1 24.9 501 323-851 129-849 (1051)
33 KOG0206 P-type ATPase [General 100.0 1.2E-44 2.7E-49 439.1 28.7 560 279-861 45-872 (1151)
34 PF00122 E1-E2_ATPase: E1-E2 A 100.0 1.4E-34 3.1E-39 307.7 23.8 223 331-566 1-230 (230)
35 PF00702 Hydrolase: haloacid d 100.0 8.7E-29 1.9E-33 259.6 13.5 210 570-803 1-215 (215)
36 COG4087 Soluble P-type ATPase 99.7 8.9E-16 1.9E-20 140.3 13.6 126 706-834 17-145 (152)
37 PF00403 HMA: Heavy-metal-asso 99.3 1.3E-11 2.8E-16 102.8 8.6 62 129-198 1-62 (62)
38 COG2608 CopZ Copper chaperone 99.2 4E-11 8.7E-16 102.4 8.7 68 126-201 2-69 (71)
39 PRK10513 sugar phosphate phosp 99.2 1.6E-10 3.5E-15 126.0 13.6 134 700-836 4-265 (270)
40 PRK01158 phosphoglycolate phos 99.2 1.4E-10 3.1E-15 123.2 12.3 133 700-836 4-226 (230)
41 TIGR01487 SPP-like sucrose-pho 99.2 1.5E-10 3.2E-15 121.9 11.1 132 701-835 3-215 (215)
42 PRK15126 thiamin pyrimidine py 99.1 1.6E-10 3.5E-15 126.2 11.5 134 700-836 3-259 (272)
43 PRK10976 putative hydrolase; P 99.1 2.1E-10 4.6E-15 124.9 12.2 134 700-836 3-261 (266)
44 COG0561 Cof Predicted hydrolas 99.1 3.8E-10 8.2E-15 122.7 13.3 136 699-837 3-259 (264)
45 TIGR01670 YrbI-phosphatas 3-de 99.1 6.1E-10 1.3E-14 110.8 13.0 106 727-836 36-146 (154)
46 PRK11133 serB phosphoserine ph 99.1 3.8E-10 8.2E-15 125.2 12.2 115 719-836 181-316 (322)
47 TIGR02137 HSK-PSP phosphoserin 99.1 5.6E-10 1.2E-14 116.0 11.1 116 719-838 68-198 (203)
48 TIGR01482 SPP-subfamily Sucros 99.0 8.1E-10 1.8E-14 117.0 11.0 130 704-836 3-222 (225)
49 PRK10530 pyridoxal phosphate ( 99.0 2E-09 4.2E-14 117.5 13.8 134 700-836 4-268 (272)
50 PLN02887 hydrolase family prot 99.0 1.3E-09 2.9E-14 129.0 12.3 136 698-836 307-576 (580)
51 TIGR02726 phenyl_P_delta pheny 99.0 2E-09 4.4E-14 108.2 10.7 109 726-836 41-152 (169)
52 PF08282 Hydrolase_3: haloacid 99.0 2E-09 4.4E-14 115.1 11.4 129 704-835 3-254 (254)
53 TIGR00099 Cof-subfamily Cof su 98.9 7.6E-09 1.6E-13 112.0 10.3 131 702-835 2-256 (256)
54 PRK09484 3-deoxy-D-manno-octul 98.9 1.8E-08 3.9E-13 103.2 12.4 127 697-827 19-156 (183)
55 TIGR00338 serB phosphoserine p 98.8 1.3E-08 2.8E-13 107.4 10.0 113 719-834 85-218 (219)
56 COG0560 SerB Phosphoserine pho 98.8 1.6E-08 3.4E-13 105.8 9.6 106 718-824 76-200 (212)
57 COG1778 Low specificity phosph 98.8 2E-08 4.2E-13 96.0 7.5 115 726-844 42-164 (170)
58 PRK03669 mannosyl-3-phosphogly 98.7 7.9E-08 1.7E-12 105.0 12.7 60 697-759 5-64 (271)
59 KOG1615 Phosphoserine phosphat 98.7 1.7E-08 3.8E-13 99.4 5.6 91 719-809 88-199 (227)
60 PRK00192 mannosyl-3-phosphogly 98.7 1.4E-07 3E-12 103.2 12.4 135 699-836 4-267 (273)
61 PRK13582 thrH phosphoserine ph 98.6 3.2E-07 6.8E-12 95.7 11.3 114 719-836 68-196 (205)
62 TIGR01486 HAD-SF-IIB-MPGP mann 98.6 3.8E-07 8.3E-12 98.7 12.2 53 784-836 195-253 (256)
63 TIGR02471 sucr_syn_bact_C sucr 98.5 3.4E-07 7.5E-12 97.8 10.9 131 702-837 2-233 (236)
64 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.5 5.9E-07 1.3E-11 93.2 9.3 100 719-820 80-200 (201)
65 PLN02954 phosphoserine phospha 98.4 2E-06 4.3E-11 91.1 12.1 114 719-834 84-222 (224)
66 TIGR01485 SPP_plant-cyano sucr 98.4 2.5E-06 5.5E-11 91.9 12.7 136 701-836 3-244 (249)
67 TIGR03333 salvage_mtnX 2-hydro 98.3 3.8E-06 8.2E-11 88.4 11.3 118 718-836 69-209 (214)
68 PRK09552 mtnX 2-hydroxy-3-keto 98.3 3E-06 6.5E-11 89.5 9.9 114 719-835 74-212 (219)
69 PF12710 HAD: haloacid dehalog 98.3 1.5E-06 3.1E-11 89.4 7.3 79 722-800 92-192 (192)
70 PLN02382 probable sucrose-phos 98.2 1.3E-05 2.7E-10 92.5 12.3 133 701-836 11-257 (413)
71 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.1 9.9E-06 2.1E-10 84.2 9.2 91 717-809 85-197 (202)
72 TIGR01488 HAD-SF-IB Haloacid D 98.1 5.7E-06 1.2E-10 84.0 7.1 81 720-802 74-177 (177)
73 PRK10187 trehalose-6-phosphate 98.1 1.6E-05 3.5E-10 86.4 10.5 133 698-836 13-241 (266)
74 TIGR01489 DKMTPPase-SF 2,3-dik 98.1 1.3E-05 2.7E-10 82.1 8.8 90 718-807 71-186 (188)
75 PRK13222 phosphoglycolate phos 98.1 2.3E-05 5E-10 82.9 10.9 119 718-838 92-224 (226)
76 COG0546 Gph Predicted phosphat 98.0 3.6E-05 7.8E-10 81.4 11.1 118 717-836 87-218 (220)
77 cd01427 HAD_like Haloacid deha 97.9 3.3E-05 7.1E-10 73.8 8.8 92 716-807 21-138 (139)
78 TIGR01454 AHBA_synth_RP 3-amin 97.9 5.3E-05 1.1E-09 79.0 10.8 115 719-835 75-203 (205)
79 PRK08238 hypothetical protein; 97.8 0.00012 2.5E-09 85.8 12.8 94 719-814 72-170 (479)
80 KOG0207 Cation transport ATPas 97.8 4.7E-05 1E-09 91.3 7.9 71 127-205 70-140 (951)
81 TIGR02461 osmo_MPG_phos mannos 97.8 0.00018 3.9E-09 76.3 11.3 53 702-758 2-54 (225)
82 PRK13288 pyrophosphatase PpaX; 97.7 0.00017 3.8E-09 75.7 10.9 115 719-835 82-210 (214)
83 PRK12702 mannosyl-3-phosphogly 97.7 0.00024 5.1E-09 76.7 11.6 56 700-758 2-57 (302)
84 PRK13223 phosphoglycolate phos 97.7 0.00021 4.5E-09 78.1 11.0 117 718-836 100-230 (272)
85 PTZ00174 phosphomannomutase; P 97.7 0.00022 4.7E-09 76.8 10.4 53 699-754 5-57 (247)
86 TIGR01544 HAD-SF-IE haloacid d 97.6 0.00051 1.1E-08 74.2 12.0 118 718-835 120-273 (277)
87 PRK10671 copA copper exporting 97.6 0.00011 2.4E-09 92.8 7.7 64 126-202 3-66 (834)
88 TIGR01449 PGP_bact 2-phosphogl 97.6 0.00033 7.2E-09 73.3 10.2 113 719-833 85-211 (213)
89 TIGR00003 copper ion binding p 97.6 0.00038 8.1E-09 56.2 8.4 65 127-199 3-67 (68)
90 PRK14502 bifunctional mannosyl 97.6 0.00046 1E-08 82.3 12.0 57 699-758 416-472 (694)
91 TIGR02463 MPGP_rel mannosyl-3- 97.5 0.00055 1.2E-08 72.3 11.2 54 702-759 2-56 (221)
92 PLN02957 copper, zinc superoxi 97.5 0.00041 9E-09 74.0 8.9 68 125-204 5-72 (238)
93 PRK10826 2-deoxyglucose-6-phos 97.4 0.00064 1.4E-08 71.8 9.1 112 718-832 91-216 (222)
94 PRK13225 phosphoglycolate phos 97.3 0.0015 3.2E-08 71.4 11.8 114 719-835 142-267 (273)
95 TIGR01662 HAD-SF-IIIA HAD-supe 97.3 0.0011 2.5E-08 63.8 9.6 105 701-805 2-126 (132)
96 TIGR03351 PhnX-like phosphonat 97.3 0.0013 2.8E-08 69.3 10.6 115 718-834 86-218 (220)
97 TIGR01484 HAD-SF-IIB HAD-super 97.3 0.00077 1.7E-08 70.2 8.8 53 702-757 2-55 (204)
98 PRK13226 phosphoglycolate phos 97.3 0.0013 2.9E-08 69.9 10.1 115 719-835 95-224 (229)
99 KOG4656 Copper chaperone for s 97.3 0.00073 1.6E-08 67.4 7.3 67 126-204 7-73 (247)
100 TIGR01545 YfhB_g-proteo haloac 97.2 0.0016 3.5E-08 68.3 10.0 91 719-809 94-201 (210)
101 PRK14501 putative bifunctional 97.2 0.0015 3.3E-08 81.3 11.4 137 694-836 487-721 (726)
102 PLN02580 trehalose-phosphatase 97.2 0.0028 6.1E-08 71.7 12.3 77 676-753 96-174 (384)
103 PRK11590 hypothetical protein; 97.2 0.0022 4.8E-08 67.3 10.9 93 719-811 95-204 (211)
104 PRK06769 hypothetical protein; 97.2 0.0012 2.7E-08 67.0 8.4 109 698-808 3-135 (173)
105 PRK11009 aphA acid phosphatase 97.2 0.0013 2.7E-08 70.0 8.3 83 719-805 114-206 (237)
106 PRK13478 phosphonoacetaldehyde 97.1 0.003 6.4E-08 68.9 11.5 87 719-805 101-198 (267)
107 TIGR01422 phosphonatase phosph 97.1 0.0025 5.5E-08 68.8 10.6 87 719-805 99-196 (253)
108 TIGR01672 AphA HAD superfamily 97.1 0.0015 3.2E-08 69.6 8.1 82 720-805 115-206 (237)
109 TIGR01548 HAD-SF-IA-hyp1 haloa 97.1 0.0016 3.5E-08 67.4 8.3 86 717-802 104-197 (197)
110 PF05116 S6PP: Sucrose-6F-phos 97.1 0.0019 4.1E-08 69.5 8.9 66 771-836 165-243 (247)
111 COG4030 Uncharacterized protei 97.1 0.0037 8.1E-08 63.6 10.1 118 719-837 83-263 (315)
112 PLN03243 haloacid dehalogenase 97.0 0.0041 8.8E-08 67.5 11.0 111 719-831 109-230 (260)
113 TIGR00213 GmhB_yaeD D,D-heptos 97.0 0.0039 8.4E-08 63.5 9.8 130 700-831 2-174 (176)
114 PLN02770 haloacid dehalogenase 97.0 0.005 1.1E-07 66.3 11.1 106 719-824 108-226 (248)
115 PRK08942 D,D-heptose 1,7-bisph 96.9 0.0079 1.7E-07 61.4 11.7 116 719-836 29-177 (181)
116 smart00775 LNS2 LNS2 domain. T 96.9 0.0084 1.8E-07 59.8 11.1 89 717-805 25-141 (157)
117 TIGR01668 YqeG_hyp_ppase HAD s 96.8 0.0057 1.2E-07 61.9 9.6 106 696-805 22-131 (170)
118 PHA02530 pseT polynucleotide k 96.8 0.0033 7.1E-08 69.7 8.6 91 716-806 184-292 (300)
119 COG4359 Uncharacterized conser 96.7 0.0033 7.2E-08 62.2 6.7 89 719-807 73-183 (220)
120 KOG1603 Copper chaperone [Inor 96.7 0.0034 7.4E-08 54.0 6.0 56 130-196 8-63 (73)
121 PRK06698 bifunctional 5'-methy 96.7 0.0081 1.7E-07 70.8 10.8 118 719-838 330-456 (459)
122 TIGR00685 T6PP trehalose-phosp 96.7 0.0046 9.9E-08 66.5 8.0 54 699-752 3-59 (244)
123 TIGR01685 MDP-1 magnesium-depe 96.7 0.0081 1.8E-07 60.8 9.2 97 712-808 38-155 (174)
124 PRK11587 putative phosphatase; 96.7 0.011 2.5E-07 62.2 10.8 106 719-824 83-198 (218)
125 COG2179 Predicted hydrolase of 96.7 0.012 2.6E-07 57.7 9.8 108 694-805 23-133 (175)
126 TIGR01428 HAD_type_II 2-haloal 96.6 0.0083 1.8E-07 62.1 8.7 88 719-806 92-188 (198)
127 TIGR02253 CTE7 HAD superfamily 96.5 0.0097 2.1E-07 62.6 9.0 91 719-809 94-195 (221)
128 PF13419 HAD_2: Haloacid dehal 96.5 0.0067 1.4E-07 60.6 7.2 89 717-805 75-172 (176)
129 PLN03017 trehalose-phosphatase 96.5 0.033 7.1E-07 62.7 13.1 59 695-754 107-167 (366)
130 PLN02575 haloacid dehalogenase 96.4 0.021 4.7E-07 64.7 11.6 111 719-831 216-337 (381)
131 TIGR01656 Histidinol-ppas hist 96.4 0.009 1.9E-07 58.9 7.5 87 719-805 27-140 (147)
132 PRK14988 GMP/IMP nucleotidase; 96.4 0.0098 2.1E-07 63.0 8.3 93 719-811 93-196 (224)
133 TIGR01664 DNA-3'-Pase DNA 3'-p 96.4 0.016 3.6E-07 58.3 9.1 107 699-805 13-157 (166)
134 PLN02779 haloacid dehalogenase 96.3 0.016 3.5E-07 63.8 9.4 106 719-824 144-263 (286)
135 TIGR02254 YjjG/YfnB HAD superf 96.3 0.017 3.7E-07 60.7 9.3 113 719-834 97-223 (224)
136 TIGR01990 bPGM beta-phosphoglu 96.2 0.0079 1.7E-07 61.3 6.1 85 719-805 87-180 (185)
137 TIGR01533 lipo_e_P4 5'-nucleot 96.2 0.019 4.1E-07 62.1 8.9 84 718-801 117-206 (266)
138 KOG4383 Uncharacterized conser 96.0 0.065 1.4E-06 62.4 12.6 148 709-856 816-1097(1354)
139 TIGR02009 PGMB-YQAB-SF beta-ph 96.0 0.011 2.3E-07 60.4 6.0 86 718-805 87-181 (185)
140 TIGR01675 plant-AP plant acid 96.0 0.03 6.5E-07 59.0 9.4 79 718-796 119-209 (229)
141 TIGR01681 HAD-SF-IIIC HAD-supe 96.0 0.029 6.3E-07 53.9 8.6 83 719-801 29-126 (128)
142 TIGR01509 HAD-SF-IA-v3 haloaci 96.0 0.026 5.6E-07 57.2 8.8 86 719-805 85-179 (183)
143 TIGR01261 hisB_Nterm histidino 96.0 0.016 3.5E-07 58.1 7.0 88 719-808 29-145 (161)
144 PLN02940 riboflavin kinase 95.9 0.024 5.3E-07 65.0 9.0 105 719-823 93-210 (382)
145 TIGR01686 FkbH FkbH-like domai 95.9 0.02 4.4E-07 64.1 8.2 110 700-809 4-129 (320)
146 COG3769 Predicted hydrolase (H 95.8 0.043 9.2E-07 56.1 8.9 58 698-759 6-63 (274)
147 TIGR01549 HAD-SF-IA-v1 haloaci 95.8 0.023 5E-07 56.0 7.0 83 719-803 64-154 (154)
148 PRK09449 dUMP phosphatase; Pro 95.7 0.05 1.1E-06 57.4 9.8 114 719-835 95-222 (224)
149 TIGR01459 HAD-SF-IIA-hyp4 HAD- 95.7 0.079 1.7E-06 56.8 11.1 100 698-804 7-116 (242)
150 PRK05446 imidazole glycerol-ph 95.6 0.028 6.1E-07 63.3 7.6 90 718-807 29-145 (354)
151 PF09419 PGP_phosphatase: Mito 95.6 0.054 1.2E-06 54.3 8.6 104 696-803 38-157 (168)
152 PLN02205 alpha,alpha-trehalose 95.6 0.067 1.4E-06 67.3 11.5 63 694-756 591-654 (854)
153 PLN02811 hydrolase 95.4 0.051 1.1E-06 57.3 8.3 89 719-807 78-181 (220)
154 TIGR02252 DREG-2 REG-2-like, H 95.4 0.056 1.2E-06 56.1 8.3 86 719-805 105-200 (203)
155 smart00577 CPDc catalytic doma 95.3 0.019 4E-07 56.7 4.1 91 717-808 43-140 (148)
156 PF06888 Put_Phosphatase: Puta 94.8 0.074 1.6E-06 56.4 7.4 79 719-797 71-183 (234)
157 TIGR01691 enolase-ppase 2,3-di 94.7 0.11 2.3E-06 54.9 8.1 93 716-808 92-194 (220)
158 PLN02151 trehalose-phosphatase 94.6 0.24 5.1E-06 55.7 11.0 58 696-754 95-154 (354)
159 PLN02645 phosphoglycolate phos 93.9 0.13 2.7E-06 57.5 7.2 103 698-808 27-136 (311)
160 PLN02919 haloacid dehalogenase 93.9 0.3 6.6E-06 63.3 11.4 105 720-824 162-280 (1057)
161 TIGR01458 HAD-SF-IIA-hyp3 HAD- 93.6 0.54 1.2E-05 50.9 11.2 55 701-759 3-64 (257)
162 PF13344 Hydrolase_6: Haloacid 93.3 0.17 3.7E-06 46.4 5.8 86 713-804 8-100 (101)
163 TIGR02247 HAD-1A3-hyp Epoxide 93.1 0.13 2.8E-06 53.7 5.2 88 719-806 94-192 (211)
164 TIGR02052 MerP mercuric transp 93.1 0.55 1.2E-05 41.0 8.6 66 127-200 24-89 (92)
165 KOG3120 Predicted haloacid deh 92.9 0.33 7.1E-06 50.0 7.5 90 719-808 84-208 (256)
166 PRK10444 UMP phosphatase; Prov 92.7 0.38 8.3E-06 51.8 8.3 53 702-758 4-59 (248)
167 PF03767 Acid_phosphat_B: HAD 92.7 0.1 2.3E-06 55.4 3.9 81 718-798 114-207 (229)
168 PRK09456 ?-D-glucose-1-phospha 92.6 0.43 9.4E-06 49.4 8.2 88 719-806 84-181 (199)
169 COG4907 Predicted membrane pro 92.1 0.1 2.2E-06 58.4 2.9 12 87-98 580-591 (595)
170 TIGR01457 HAD-SF-IIA-hyp2 HAD- 91.9 0.76 1.6E-05 49.5 9.4 55 701-759 3-60 (249)
171 TIGR01452 PGP_euk phosphoglyco 91.7 2.2 4.8E-05 46.7 13.0 98 700-807 3-108 (279)
172 TIGR01993 Pyr-5-nucltdase pyri 91.6 0.49 1.1E-05 48.1 7.2 85 719-806 84-181 (184)
173 PHA02597 30.2 hypothetical pro 91.4 0.35 7.6E-06 49.8 6.0 91 719-811 74-176 (197)
174 PRK10725 fructose-1-P/6-phosph 91.4 0.49 1.1E-05 48.2 6.9 81 724-805 92-181 (188)
175 PRK10563 6-phosphogluconate ph 91.4 0.31 6.7E-06 51.2 5.6 87 719-808 88-184 (221)
176 PLN02177 glycerol-3-phosphate 90.4 1.1 2.4E-05 53.0 9.4 85 720-810 111-215 (497)
177 TIGR01680 Veg_Stor_Prot vegeta 90.3 1.5 3.2E-05 47.4 9.3 79 717-796 143-235 (275)
178 KOG3040 Predicted sugar phosph 88.9 1.3 2.9E-05 45.2 7.3 49 710-758 14-65 (262)
179 PF08235 LNS2: LNS2 (Lipin/Ned 88.5 2.6 5.7E-05 41.8 9.0 89 717-805 25-141 (157)
180 TIGR01663 PNK-3'Pase polynucle 86.9 1.8 3.9E-05 51.5 8.1 104 699-802 168-303 (526)
181 TIGR01684 viral_ppase viral ph 86.7 1.4 3.1E-05 48.0 6.3 60 698-760 125-187 (301)
182 PLN03138 Protein TOC75; Provis 86.1 0.68 1.5E-05 56.9 4.1 14 147-160 138-151 (796)
183 COG0637 Predicted phosphatase/ 85.2 2.4 5.1E-05 44.8 7.2 91 718-808 85-184 (221)
184 PF02358 Trehalose_PPase: Treh 84.6 2.4 5.3E-05 45.1 7.1 55 704-758 2-59 (235)
185 PRK10748 flavin mononucleotide 83.8 1.7 3.6E-05 46.4 5.4 84 719-808 113-206 (238)
186 PRK13748 putative mercuric red 83.0 3.6 7.8E-05 49.9 8.5 67 129-204 3-69 (561)
187 COG0647 NagD Predicted sugar p 81.9 9.7 0.00021 41.4 10.2 114 700-827 9-130 (269)
188 COG2177 FtsX Cell division pro 81.8 90 0.002 34.6 20.7 22 138-159 71-92 (297)
189 cd00371 HMA Heavy-metal-associ 81.5 9.5 0.00021 27.4 7.6 42 131-172 3-44 (63)
190 PF12689 Acid_PPase: Acid Phos 80.6 3.8 8.2E-05 41.3 6.1 87 720-808 46-147 (169)
191 TIGR01689 EcbF-BcbF capsule bi 80.0 4.7 0.0001 38.6 6.3 50 701-750 3-55 (126)
192 PHA03398 viral phosphatase sup 79.9 3.9 8.6E-05 44.7 6.4 59 699-760 128-189 (303)
193 COG1011 Predicted hydrolase (H 79.5 7.3 0.00016 40.8 8.4 115 719-836 99-227 (229)
194 TIGR02251 HIF-SF_euk Dullard-l 77.8 2 4.4E-05 43.0 3.3 90 716-806 39-135 (162)
195 PF05822 UMPH-1: Pyrimidine 5' 77.0 9.7 0.00021 40.7 8.1 116 719-834 90-240 (246)
196 TIGR01460 HAD-SF-IIA Haloacid 76.6 15 0.00034 39.0 9.8 84 715-804 10-101 (236)
197 PLN02423 phosphomannomutase 75.7 4.1 8.8E-05 43.8 5.1 39 770-809 188-231 (245)
198 COG3700 AphA Acid phosphatase 75.4 3.7 8.1E-05 40.9 4.2 88 720-808 115-210 (237)
199 KOG0208 Cation transport ATPas 75.2 99 0.0021 39.2 16.7 208 334-595 219-477 (1140)
200 KOG1456 Heterogeneous nuclear 74.4 12 0.00025 41.5 8.0 45 127-171 31-75 (494)
201 TIGR01493 HAD-SF-IA-v2 Haloaci 73.2 2.8 6E-05 42.1 2.9 76 719-801 90-174 (175)
202 PRK14054 methionine sulfoxide 72.6 5.6 0.00012 40.2 4.8 40 138-177 10-68 (172)
203 TIGR02244 HAD-IG-Ncltidse HAD 71.0 15 0.00032 41.5 8.2 37 721-757 186-223 (343)
204 COG0241 HisB Histidinol phosph 69.9 19 0.00041 36.7 7.9 88 720-808 32-146 (181)
205 COG1877 OtsB Trehalose-6-phosp 69.4 25 0.00054 38.2 9.2 63 696-758 15-80 (266)
206 COG0078 ArgF Ornithine carbamo 68.5 64 0.0014 35.5 11.9 91 696-797 68-167 (310)
207 COG2503 Predicted secreted aci 66.8 20 0.00043 38.0 7.4 82 720-801 123-211 (274)
208 PF01206 TusA: Sulfurtransfera 66.0 14 0.00031 31.0 5.3 55 128-200 1-55 (70)
209 TIGR01456 CECR5 HAD-superfamil 65.8 31 0.00068 38.6 9.6 88 712-805 9-106 (321)
210 PLN03138 Protein TOC75; Provis 64.1 11 0.00023 46.9 5.7 14 186-199 188-201 (796)
211 KOG4383 Uncharacterized conser 64.0 73 0.0016 38.4 11.9 34 375-408 164-197 (1354)
212 PRK05528 methionine sulfoxide 63.2 13 0.00027 37.0 5.0 40 138-177 8-61 (156)
213 PRK00058 methionine sulfoxide 61.4 11 0.00025 39.2 4.6 40 138-177 52-110 (213)
214 PRK14194 bifunctional 5,10-met 60.2 71 0.0015 35.4 10.7 60 766-825 140-209 (301)
215 PRK13014 methionine sulfoxide 58.0 12 0.00026 38.3 3.9 40 138-177 15-73 (186)
216 PLN02423 phosphomannomutase 56.2 20 0.00044 38.4 5.7 48 700-751 8-55 (245)
217 KOG0921 Dosage compensation co 55.6 8.4 0.00018 47.5 2.8 6 41-46 1179-1185(1282)
218 TIGR00739 yajC preprotein tran 55.2 53 0.0011 29.1 7.1 31 351-381 28-58 (84)
219 PF06506 PrpR_N: Propionate ca 53.1 46 0.001 33.6 7.4 107 722-847 64-172 (176)
220 TIGR01459 HAD-SF-IIA-hyp4 HAD- 52.8 17 0.00037 38.8 4.4 85 721-806 140-237 (242)
221 PF00389 2-Hacid_dh: D-isomer 51.2 2.2E+02 0.0048 27.0 12.7 86 715-809 2-89 (133)
222 PF01625 PMSR: Peptide methion 49.7 29 0.00062 34.5 5.0 40 138-177 7-65 (155)
223 TIGR00401 msrA methionine-S-su 49.1 27 0.00059 34.4 4.8 40 138-177 7-65 (149)
224 PRK14188 bifunctional 5,10-met 48.5 1.1E+02 0.0023 34.0 9.7 59 766-824 139-207 (296)
225 PRK03692 putative UDP-N-acetyl 48.0 94 0.002 33.3 9.1 125 725-851 95-234 (243)
226 cd02071 MM_CoA_mut_B12_BD meth 47.9 91 0.002 29.4 8.1 65 709-774 52-118 (122)
227 KOG0105 Alternative splicing f 47.7 1.2E+02 0.0027 30.7 8.9 45 127-172 115-159 (241)
228 PRK02261 methylaspartate mutas 47.4 1.5E+02 0.0033 28.7 9.7 73 695-769 28-122 (137)
229 CHL00200 trpA tryptophan synth 47.0 2.9E+02 0.0062 30.1 12.7 84 714-800 123-218 (263)
230 PF13246 Hydrolase_like2: Puta 46.3 34 0.00074 30.6 4.6 60 625-684 19-90 (91)
231 COG0225 MsrA Peptide methionin 46.2 29 0.00062 34.9 4.4 47 138-192 13-78 (174)
232 KOG3085 Predicted hydrolase (H 45.9 45 0.00098 35.5 6.1 96 721-817 115-221 (237)
233 PF13242 Hydrolase_like: HAD-h 45.9 38 0.00083 28.8 4.7 53 772-824 10-70 (75)
234 COG1512 Beta-propeller domains 45.6 23 0.0005 38.5 4.0 15 9-23 136-150 (271)
235 COG1171 IlvA Threonine dehydra 45.0 38 0.00082 38.1 5.6 88 706-801 47-138 (347)
236 PRK15424 propionate catabolism 45.0 2.3E+02 0.0049 34.3 12.6 70 723-794 95-165 (538)
237 TIGR01452 PGP_euk phosphoglyco 43.4 89 0.0019 34.1 8.3 84 721-806 145-243 (279)
238 PRK14179 bifunctional 5,10-met 42.4 2.1E+02 0.0045 31.5 10.7 61 765-825 138-208 (284)
239 PRK11018 hypothetical protein; 42.3 79 0.0017 27.4 6.1 57 127-201 8-64 (78)
240 KOG2882 p-Nitrophenyl phosphat 41.7 82 0.0018 34.6 7.3 88 712-806 31-128 (306)
241 PTZ00445 p36-lilke protein; Pr 41.5 99 0.0022 32.4 7.6 112 694-805 38-200 (219)
242 PF00875 DNA_photolyase: DNA p 41.4 1.1E+02 0.0023 30.5 7.9 75 723-799 54-134 (165)
243 COG1862 YajC Preprotein transl 41.4 71 0.0015 29.1 5.8 41 331-371 14-54 (97)
244 KOG3915 Transcription regulato 40.3 39 0.00085 38.5 4.7 9 68-76 47-55 (641)
245 PRK05550 bifunctional methioni 40.2 37 0.00081 37.1 4.5 40 138-177 134-192 (283)
246 PF00763 THF_DHG_CYH: Tetrahyd 40.1 73 0.0016 30.0 6.0 68 716-783 8-86 (117)
247 PRK14191 bifunctional 5,10-met 39.9 2E+02 0.0043 31.7 10.1 60 766-825 138-207 (285)
248 KOG3128 Uncharacterized conser 39.0 1.7E+02 0.0036 31.4 8.8 116 719-834 138-289 (298)
249 PRK13111 trpA tryptophan synth 38.8 5.4E+02 0.012 27.9 14.4 78 717-797 124-213 (258)
250 TIGR02250 FCP1_euk FCP1-like p 37.6 55 0.0012 32.5 5.0 41 718-759 57-97 (156)
251 PF04312 DUF460: Protein of un 37.6 2.8E+02 0.006 27.0 9.3 75 703-780 47-123 (138)
252 PRK05585 yajC preprotein trans 37.5 1.7E+02 0.0037 27.1 7.8 28 344-371 36-63 (106)
253 TIGR01501 MthylAspMutase methy 37.2 2.3E+02 0.005 27.5 9.0 68 709-780 54-129 (134)
254 cd03421 SirA_like_N SirA_like_ 37.0 69 0.0015 26.6 4.8 53 130-201 2-54 (67)
255 COG1888 Uncharacterized protei 36.1 1.7E+02 0.0036 26.2 6.9 71 125-203 5-80 (97)
256 cd00860 ThrRS_anticodon ThrRS 36.1 1.1E+02 0.0025 26.4 6.4 47 713-759 6-53 (91)
257 cd01994 Alpha_ANH_like_IV This 35.4 1.7E+02 0.0038 30.1 8.5 71 723-795 11-100 (194)
258 PF13380 CoA_binding_2: CoA bi 34.6 55 0.0012 30.7 4.2 40 720-759 64-104 (116)
259 KOG1250 Threonine/serine dehyd 33.8 1E+02 0.0022 35.1 6.7 90 702-799 83-176 (457)
260 TIGR03679 arCOG00187 arCOG0018 33.8 1.7E+02 0.0037 30.8 8.2 71 723-795 9-98 (218)
261 TIGR00640 acid_CoA_mut_C methy 33.7 2.1E+02 0.0046 27.5 8.2 71 707-778 53-125 (132)
262 PRK14192 bifunctional 5,10-met 32.3 1.2E+02 0.0027 33.3 7.1 67 716-782 11-89 (283)
263 PLN02591 tryptophan synthase 31.9 3.3E+02 0.0071 29.4 10.1 91 717-810 113-219 (250)
264 cd04724 Tryptophan_synthase_al 31.9 2.2E+02 0.0048 30.4 8.9 81 716-796 110-199 (242)
265 TIGR02329 propionate_PrpR prop 31.9 4.7E+02 0.01 31.5 12.4 104 723-846 85-190 (526)
266 PF12710 HAD: haloacid dehalog 31.8 22 0.00047 35.9 1.1 13 573-585 1-13 (192)
267 TIGR03679 arCOG00187 arCOG0018 31.6 1.8E+02 0.0038 30.6 7.9 64 721-788 72-140 (218)
268 PRK05886 yajC preprotein trans 31.0 2.6E+02 0.0056 26.1 7.8 30 351-380 29-58 (109)
269 TIGR03849 arch_ComA phosphosul 30.8 1.9E+02 0.004 30.9 7.8 64 722-787 41-117 (237)
270 COG1512 Beta-propeller domains 30.5 45 0.00098 36.3 3.3 9 91-99 252-260 (271)
271 TIGR00262 trpA tryptophan synt 30.2 4.1E+02 0.0088 28.7 10.6 80 715-796 120-210 (256)
272 PF11491 DUF3213: Protein of u 30.0 60 0.0013 28.4 3.2 54 139-200 11-64 (88)
273 PF15584 Imm44: Immunity prote 30.0 22 0.00047 31.7 0.6 20 387-406 13-32 (94)
274 PF06506 PrpR_N: Propionate ca 29.9 89 0.0019 31.6 5.2 79 716-799 14-95 (176)
275 PF02680 DUF211: Uncharacteriz 29.8 96 0.0021 28.0 4.5 69 126-203 5-78 (95)
276 PRK14182 bifunctional 5,10-met 29.3 1.3E+02 0.0027 33.1 6.4 67 716-782 9-86 (282)
277 TIGR01524 ATPase-IIIB_Mg magne 29.3 4.2E+02 0.0092 34.1 12.2 79 330-410 96-186 (867)
278 TIGR00640 acid_CoA_mut_C methy 28.9 5.3E+02 0.011 24.8 10.6 101 710-812 6-114 (132)
279 cd03420 SirA_RHOD_Pry_redox Si 28.8 1.2E+02 0.0027 25.4 5.0 55 130-202 2-56 (69)
280 TIGR02898 spore_YhcN_YlaJ spor 28.8 1.5E+02 0.0032 29.7 6.3 37 139-175 54-90 (158)
281 PF03129 HGTP_anticodon: Antic 28.3 1.8E+02 0.0038 25.6 6.3 48 712-759 3-54 (94)
282 TIGR01517 ATPase-IIB_Ca plasma 28.3 5.3E+02 0.011 33.6 13.0 35 375-410 187-221 (941)
283 PLN02565 cysteine synthase 27.6 2.1E+02 0.0046 32.0 8.1 76 723-801 49-131 (322)
284 PF14336 DUF4392: Domain of un 27.5 1.4E+02 0.0031 32.9 6.6 39 720-758 61-100 (291)
285 PRK14166 bifunctional 5,10-met 27.5 1.7E+02 0.0037 32.1 7.1 67 716-782 9-86 (282)
286 PF04273 DUF442: Putative phos 27.4 2.1E+02 0.0044 26.7 6.7 75 724-799 16-102 (110)
287 cd05017 SIS_PGI_PMI_1 The memb 27.1 1.2E+02 0.0025 28.4 5.1 38 720-759 55-92 (119)
288 PLN03064 alpha,alpha-trehalose 27.1 1.2E+02 0.0027 38.9 6.7 66 693-758 585-662 (934)
289 TIGR00696 wecB_tagA_cpsF bacte 26.3 2.7E+02 0.0058 28.3 7.9 119 725-844 38-171 (177)
290 cd02072 Glm_B12_BD B12 binding 26.1 3.9E+02 0.0085 25.7 8.4 57 708-766 51-115 (128)
291 cd00859 HisRS_anticodon HisRS 26.0 1.7E+02 0.0037 24.9 5.8 47 713-759 6-53 (91)
292 KOG1635 Peptide methionine sul 25.9 1.1E+02 0.0023 30.8 4.5 40 138-177 31-89 (191)
293 PRK14170 bifunctional 5,10-met 25.8 1.5E+02 0.0033 32.5 6.3 67 716-782 10-87 (284)
294 cd01994 Alpha_ANH_like_IV This 25.7 2.7E+02 0.0058 28.7 7.9 67 719-789 72-143 (194)
295 PF07287 DUF1446: Protein of u 25.4 2.5E+02 0.0055 32.0 8.2 107 716-825 52-167 (362)
296 PF03120 DNA_ligase_OB: NAD-de 25.3 35 0.00076 30.0 1.1 22 380-401 45-67 (82)
297 KOG3915 Transcription regulato 25.3 75 0.0016 36.4 3.8 11 47-57 36-46 (641)
298 PRK13125 trpA tryptophan synth 25.0 8.5E+02 0.018 25.9 13.1 120 714-843 105-241 (244)
299 cd04726 KGPDC_HPS 3-Keto-L-gul 24.6 5E+02 0.011 26.4 9.8 37 722-759 90-128 (202)
300 TIGR02765 crypto_DASH cryptoch 24.5 2.8E+02 0.006 32.4 8.8 62 722-785 61-127 (429)
301 PTZ00146 fibrillarin; Provisio 24.3 74 0.0016 35.1 3.6 7 401-407 203-209 (293)
302 PLN02645 phosphoglycolate phos 24.0 1.9E+02 0.0041 32.2 6.9 59 775-835 239-307 (311)
303 PRK09435 membrane ATPase/prote 23.9 5.6E+02 0.012 28.9 10.5 114 710-825 58-202 (332)
304 PF09580 Spore_YhcN_YlaJ: Spor 23.8 1.3E+02 0.0029 30.2 5.2 56 138-195 74-129 (177)
305 PRK14178 bifunctional 5,10-met 23.5 5E+02 0.011 28.5 9.7 61 766-826 133-203 (279)
306 PRK14189 bifunctional 5,10-met 23.1 2E+02 0.0044 31.6 6.7 67 716-782 11-88 (285)
307 PLN03063 alpha,alpha-trehalose 22.7 1.4E+02 0.003 37.9 6.1 66 693-758 501-572 (797)
308 cd00532 MGS-like MGS-like doma 22.7 3.6E+02 0.0079 24.9 7.5 75 713-794 3-80 (112)
309 COG2062 SixA Phosphohistidine 22.6 3.2E+02 0.007 27.4 7.4 72 721-792 31-110 (163)
310 PRK09479 glpX fructose 1,6-bis 22.4 2.7E+02 0.0059 30.8 7.3 72 747-820 143-222 (319)
311 PRK06381 threonine synthase; V 22.3 2.6E+02 0.0055 31.2 7.6 71 723-796 50-122 (319)
312 PRK15122 magnesium-transportin 21.9 3.3E+02 0.0071 35.3 9.3 184 335-544 124-347 (903)
313 TIGR03556 photolyase_8HDF deox 21.9 3.5E+02 0.0076 32.1 8.9 63 722-786 55-122 (471)
314 PRK06450 threonine synthase; V 21.8 2.9E+02 0.0063 31.2 7.9 73 723-798 84-158 (338)
315 COG4278 Uncharacterized conser 21.8 88 0.0019 32.8 3.3 11 70-80 221-231 (269)
316 PRK14175 bifunctional 5,10-met 21.8 2.1E+02 0.0045 31.6 6.4 67 716-782 11-88 (286)
317 PRK14169 bifunctional 5,10-met 21.6 2.1E+02 0.0046 31.4 6.4 67 716-782 9-86 (282)
318 cd00291 SirA_YedF_YeeD SirA, Y 21.4 1.9E+02 0.0042 23.8 4.9 54 130-201 2-55 (69)
319 PHA02669 hypothetical protein; 21.1 1.9E+02 0.0042 28.5 5.2 48 296-359 1-49 (210)
320 PRK14018 trifunctional thiored 21.0 1.2E+02 0.0026 36.4 4.6 40 138-177 205-262 (521)
321 PRK08813 threonine dehydratase 20.8 2.8E+02 0.0061 31.5 7.5 72 723-797 67-141 (349)
322 PF02679 ComA: (2R)-phospho-3- 20.8 2.9E+02 0.0062 29.7 7.0 103 721-827 53-169 (244)
323 KOG3074 Transcriptional regula 20.6 77 0.0017 33.2 2.6 11 187-197 79-89 (263)
324 PF03808 Glyco_tran_WecB: Glyc 20.4 3.8E+02 0.0082 26.9 7.6 115 724-842 37-170 (172)
325 COG3981 Predicted acetyltransf 20.4 2.4E+02 0.0051 28.5 5.8 60 700-759 70-156 (174)
326 PF00122 E1-E2_ATPase: E1-E2 A 20.3 5.6E+02 0.012 26.5 9.4 61 334-394 7-74 (230)
327 TIGR01659 sex-lethal sex-letha 20.3 7.9E+02 0.017 27.9 10.9 47 126-172 106-158 (346)
No 1
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-138 Score=1226.07 Aligned_cols=707 Identities=43% Similarity=0.642 Sum_probs=640.1
Q ss_pred cEEEEEecCCCChhhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeCCCccc-cchhhhhhHHHHHHHHHhcCcccccccC
Q 002354 126 DVIILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAKV-IPNWQRQLGEALAKHLTSCGFKSSLRDM 204 (932)
Q Consensus 126 ~~~~l~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~~~~~~-~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 204 (932)
.+..|.|+||+|++|+++|| +|+++|||.+++||+.++++.|.||+...+ . +.+.+.+++.||.......
T Consensus 2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~--------~~~~~~v~~~gy~~~~~~~ 72 (713)
T COG2217 2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLP--------ADIVAAVEKAGYSARLTAA 72 (713)
T ss_pred ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccH--------HHHHHHHHhcCcccccccc
Confidence 35789999999999999999 999999999999999999999999976544 3 7899999999998765111
Q ss_pred CCccchhhhHHHHHHHhHhHhhccchhHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhHHHHHHHHHHHHhccHHHHHH
Q 002354 205 GTDNFFKVFETKMHEKRNRLKESGRGLAVSWALCAVCLVGHLSHILGAKASWIHVFHSTGFHLSLSLFTLLGPGFQLILD 284 (932)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~ 284 (932)
.... .+ .+... . ++..+++++++++..+.++..+..+.+. ....|+.+++++|+++++|||||+.
T Consensus 73 ~~~~-----~~-~~~~~-~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~v~~~~g~~f~~~ 137 (713)
T COG2217 73 LADP-----AE-AEARL-L-RELLRRLIIAGLLTLPLLLLSLGLLLGA-------FLLPWVSFLLATPVLFYGGWPFYRG 137 (713)
T ss_pred ccch-----hh-hhhhh-h-hhHHHHHHHHHHHHHHHHHHHHHhhcch-------hhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 0000 00 00000 1 2234567777777766655443333221 2245788999999999999999999
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccCCCe
Q 002354 285 GVKSLFKGAPNMNTLVGLGAVSSFTVSSLAALVPKLGWKAFFEEPIMLIAFVLLGKNLEQRAKIKATSDMTGLLGILPSK 364 (932)
Q Consensus 285 a~~~l~~~~~nmd~Li~l~~~~a~~~s~~~~~~~~~~~~~yf~~~~~il~~~llg~~le~~~~~ka~~~l~~L~~~~p~~ 364 (932)
+|+.++++.+|||+|+++|++++|+||.|.++.+ .||++++++++|+++|+++|.+++.|+++++++|.++.|++
T Consensus 138 a~~~l~~~~~~md~Lv~la~~~A~~~s~~~~~~~-----~yf~~aa~ii~l~~~G~~LE~~a~~ra~~ai~~L~~l~p~~ 212 (713)
T COG2217 138 AWRALRRGRLNMDTLVALATIGAYAYSLYATLFP-----VYFEEAAMLIFLFLLGRYLEARAKGRARRAIRALLDLAPKT 212 (713)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCE
Confidence 9999999999999999999999999999998874 89999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeeeEEEEeeeeEEeccccccCCCceeecCCCccccceeeecCcEE
Q 002354 365 ARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAGRSTVDESSFTGEPLPVTKIPESEVAAGSINLNGTLT 444 (932)
Q Consensus 365 ~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll~G~~~VDES~LTGES~Pv~K~~g~~V~aGt~v~~G~~~ 444 (932)
++++++++ ++++||+++|++||+|+|+|||+||+||+|++|++.||||+|||||.|+.|.+||.|++||+|.+|.++
T Consensus 213 A~~~~~~~---~~~~v~v~~v~~GD~v~VrpGE~IPvDG~V~~G~s~vDeS~iTGEs~PV~k~~Gd~V~aGtiN~~G~l~ 289 (713)
T COG2217 213 ATVVRGDG---EEEEVPVEEVQVGDIVLVRPGERIPVDGVVVSGSSSVDESMLTGESLPVEKKPGDEVFAGTVNLDGSLT 289 (713)
T ss_pred EEEEecCC---cEEEEEHHHCCCCCEEEECCCCEecCCeEEEeCcEEeecchhhCCCCCEecCCCCEEeeeEEECCccEE
Confidence 99987642 389999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcchHHHHHHHHHHhhcCCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcccchhccCCcHHHHHHHH
Q 002354 445 VEVRRPGGETAMGDIVRLVEEAQSREAPVQRLADQVSGHFTYGVIALSAATFVFWNLFGAHVLPTAIQYGGPVSLALQLS 524 (932)
Q Consensus 445 ~~V~~tG~~T~~gki~~~v~~a~~~~~~lq~~~d~~~~~~~~~vl~la~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a 524 (932)
++|+++|.||++++|+++++++|.+|+|+|+++||++.+|+|.++++++++|++|++++. .+|..++.++
T Consensus 290 i~vt~~~~dt~la~Ii~LVe~Aq~~Ka~iqrlaDr~a~~fvp~vl~ia~l~f~~w~~~~~----------~~~~~a~~~a 359 (713)
T COG2217 290 IRVTRVGADTTLARIIRLVEEAQSSKAPIQRLADRVASYFVPVVLVIAALTFALWPLFGG----------GDWETALYRA 359 (713)
T ss_pred EEEEecCccCHHHHHHHHHHHHhhCCchHHHHHHHHHHccHHHHHHHHHHHHHHHHHhcC----------CcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887753 3567899999
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHhhhcCccccCchHHHhcccccEEEecCCCCcccCceEEEEEEecCCCCCCCCCC
Q 002354 525 CSVLVVACPCALGLATPTAMLVGTSLGATRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQ 604 (932)
Q Consensus 525 i~vLvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~ 604 (932)
+++|+++|||||++++|++++.++.+++|+||++|+++++|+++++|+++||||||||+|+|+|+++...
T Consensus 360 ~avLVIaCPCALgLAtP~ai~~g~g~aA~~GILiK~g~~LE~l~~v~tvvFDKTGTLT~G~p~v~~v~~~---------- 429 (713)
T COG2217 360 LAVLVIACPCALGLATPTAILVGIGRAARRGILIKGGEALERLAKVDTVVFDKTGTLTEGKPEVTDVVAL---------- 429 (713)
T ss_pred HhheeeeCccHHHhHHHHHHHHHHHHHHhCceEEeChHHHHhhccCCEEEEeCCCCCcCCceEEEEEecC----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCCccccccCCCeEEecCCeeEEEEcCeEEEeecHHHHhhcCCC
Q 002354 605 NPIHPLSETEILKFAAGVESNTVHPIGKAIVEAAEFSNCQNVKVADGTFIEEPGSGTVAIIEDRKVSVGTIDWLRSHGVD 684 (932)
Q Consensus 605 ~~~~~~~~~~ll~laa~~e~~s~hPi~~Ai~~~a~~~~~~~~~~~~~~~~~~~g~g~~~~i~~~~~~~Gs~~~i~~~~~~ 684 (932)
++ +++++|++++++|.+|+||+++||+++++..+.. ....+++++|+|+.+.++|+.+.+|+++++.+++.+
T Consensus 430 ---~~-~e~~~L~laAalE~~S~HPiA~AIv~~a~~~~~~----~~~~~~~i~G~Gv~~~v~g~~v~vG~~~~~~~~~~~ 501 (713)
T COG2217 430 ---DG-DEDELLALAAALEQHSEHPLAKAIVKAAAERGLP----DVEDFEEIPGRGVEAEVDGERVLVGNARLLGEEGID 501 (713)
T ss_pred ---CC-CHHHHHHHHHHHHhcCCChHHHHHHHHHHhcCCC----CccceeeeccCcEEEEECCEEEEEcCHHHHhhcCCC
Confidence 33 7899999999999999999999999999887632 224499999999999999999999999999988765
Q ss_pred Cch-hhhHHHHHhCCCeEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCce
Q 002354 685 TST-FQEVEMEDLMNQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKV 763 (932)
Q Consensus 685 ~~~-~~~~~~~~~~g~~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v 763 (932)
... .+..+..+.+|.++++++.|++++|++.++|++|++++++|++||++|++++|+|||++.+|+++|+++||+ ++
T Consensus 502 ~~~~~~~~~~~~~~G~t~v~va~dg~~~g~i~~~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId--~v 579 (713)
T COG2217 502 LPLLSERIEALESEGKTVVFVAVDGKLVGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGID--EV 579 (713)
T ss_pred ccchhhhHHHHHhcCCeEEEEEECCEEEEEEEEeCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChH--hh
Confidence 443 223344556789999999999999999999999999999999999999999999999999999999999997 89
Q ss_pred ecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhhcCEEEeCCChhHHHHHHHHHHHHHH
Q 002354 764 LSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALASSHIGVAMGGGVGAASEVASVVLMGNRLSQLLVALELSRLTMK 843 (932)
Q Consensus 764 ~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl~~~~~~~i~~~i~~gR~~~~ 843 (932)
++++.||||.++|++||++|++|+|||||+||+|||++||||||||.|+|.|+++||+++++||+..+++++++||+|++
T Consensus 580 ~AellPedK~~~V~~l~~~g~~VamVGDGINDAPALA~AdVGiAmG~GtDvA~eaADvvL~~~dL~~v~~ai~lsr~t~~ 659 (713)
T COG2217 580 RAELLPEDKAEIVRELQAEGRKVAMVGDGINDAPALAAADVGIAMGSGTDVAIEAADVVLMRDDLSAVPEAIDLSRATRR 659 (713)
T ss_pred eccCCcHHHHHHHHHHHhcCCEEEEEeCCchhHHHHhhcCeeEeecCCcHHHHHhCCEEEecCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHhhhhHHHHHHHhhhhccc
Q 002354 844 TVKQNLWWAFGYNIVGIPIAAGVLLPVTGTMLTPSIAGALMGLSSIGVMANSLLLRLK 901 (932)
Q Consensus 844 ~i~~nl~~a~~~N~i~i~la~~~~~~~~g~~l~P~~aa~~m~~ssl~v~lnsl~l~~~ 901 (932)
+||||++|+|+||+++||+|+++ +++|++|+++|.+||++|++||+||+..
T Consensus 660 ~IkqNl~~A~~yn~~~iplA~~g-------~l~p~~A~~am~~SSv~VvlNaLRL~~~ 710 (713)
T COG2217 660 IIKQNLFWAFGYNAIAIPLAAGG-------LLTPWIAALAMSGSSVLVVLNALRLLRS 710 (713)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------hcCHHHHHHHHcccHHHHHHHHHHhhcc
Confidence 99999999999999999999865 4899999999999999999999999753
No 2
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-135 Score=1172.34 Aligned_cols=775 Identities=40% Similarity=0.588 Sum_probs=682.2
Q ss_pred cEEEEEecCCCChhhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeCCCccccchhhhhhHHHHHHHHHhcCcccccccCC
Q 002354 126 DVIILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAKVIPNWQRQLGEALAKHLTSCGFKSSLRDMG 205 (932)
Q Consensus 126 ~~~~l~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~~~~~~~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~ 205 (932)
..+.|.|.||+|++|+.+||+.+++++||++++|+..++++.|.||++...+ .++.+.+++.||++......
T Consensus 146 ~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~p--------r~i~k~ie~~~~~~~~~~~~ 217 (951)
T KOG0207|consen 146 QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGP--------RDIIKAIEETGFEASVRPYG 217 (951)
T ss_pred CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccCh--------HHHHHHHHhhcccceeeecc
Confidence 6799999999999999999999999999999999999999999999999988 78999999999998766532
Q ss_pred CccchhhhHHHHHHHhHhHhhccchhHHHHHHHHHHHHHHHH-Hhh------hhhhhhHHHhhhhHHHHHHHHHHHHhcc
Q 002354 206 TDNFFKVFETKMHEKRNRLKESGRGLAVSWALCAVCLVGHLS-HIL------GAKASWIHVFHSTGFHLSLSLFTLLGPG 278 (932)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~g 278 (932)
+......+ + .++ +++.+++.++.+.++++++++..+. ++. .. +.++.+....+++++|++|++|..|
T Consensus 218 ~~~~~~~l-~-~~~---ei~~w~~~fl~s~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~vqf~~G 291 (951)
T KOG0207|consen 218 DTTFKNSL-K-HKE---EIRKWKRPFLISLGFSLPVSFAMIICPPLAWILALLV-PFLPGLSYGNSLSFVLATPVQFVGG 291 (951)
T ss_pred ccchhhhh-h-hhh---HHHhcchHHHHHHHHHHHHHHHHHHhccchhhhhhhc-cccccchhhhHHHhhhheeeEEecc
Confidence 22211011 1 112 3455566677776666655443211 111 11 2334455566889999999999999
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHhccccc--cchhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 002354 279 FQLILDGVKSLFKGAPNMNTLVGLGAVSSFTVSSLAALVPKLG--WKAFFEEPIMLIAFVLLGKNLEQRAKIKATSDMTG 356 (932)
Q Consensus 279 ~~~~~~a~~~l~~~~~nmd~Li~l~~~~a~~~s~~~~~~~~~~--~~~yf~~~~~il~~~llg~~le~~~~~ka~~~l~~ 356 (932)
||||.+||++|+|++.|||+|+++++.++|+||.+.....-.. +..|||++.|++.|+.+|+|+|.+++.|+..++.+
T Consensus 292 ~~fy~~A~ksL~~g~~nMdvLv~L~t~aay~~S~~~~~~~~~~~~~~tfFdt~~MLi~fi~lgr~LE~~Ak~kts~alsk 371 (951)
T KOG0207|consen 292 RPFYLAAYKSLKRGSANMDVLVVLGTTAAYFYSIFSLLAAVVFDSPPTFFDTSPMLITFITLGRWLESLAKGKTSEALSK 371 (951)
T ss_pred eeeHHHHHHHHhcCCCCceeehhhHHHHHHHHHHHHHHHHHHccCcchhccccHHHHHHHHHHHHHHHHhhccchHHHHH
Confidence 9999999999999999999999999999999998765542222 78999999999999999999999999999999999
Q ss_pred hhccCCCeEEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeeeEEEEeeeeEEeccccccCCCceeecCCCccccce
Q 002354 357 LLGILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAGRSTVDESSFTGEPLPVTKIPESEVAAGS 436 (932)
Q Consensus 357 L~~~~p~~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll~G~~~VDES~LTGES~Pv~K~~g~~V~aGt 436 (932)
|+++.|.++.++.++. .+++|+.+.|++||+|.|+||++||+||+|++|+++||||++|||++||.|++|+.|.+||
T Consensus 372 Lmsl~p~~a~ii~~g~---~e~eI~v~lvq~gdivkV~pG~kiPvDG~Vv~Gss~VDEs~iTGEs~PV~Kk~gs~ViaGs 448 (951)
T KOG0207|consen 372 LMSLAPSKATIIEDGS---EEKEIPVDLVQVGDIVKVKPGEKIPVDGVVVDGSSEVDESLITGESMPVPKKKGSTVIAGS 448 (951)
T ss_pred HhhcCcccceEeecCC---cceEeeeeeeccCCEEEECCCCccccccEEEeCceeechhhccCCceecccCCCCeeeeee
Confidence 9999999999987632 3889999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCcEEEEEEecCCcchHHHHHHHHHHhhcCCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcccchhccCCc
Q 002354 437 INLNGTLTVEVRRPGGETAMGDIVRLVEEAQSREAPVQRLADQVSGHFTYGVIALSAATFVFWNLFGAHVLPTAIQYGGP 516 (932)
Q Consensus 437 ~v~~G~~~~~V~~tG~~T~~gki~~~v~~a~~~~~~lq~~~d~~~~~~~~~vl~la~~~~i~~~~~~~~~~~~~~~~~~~ 516 (932)
+|.+|.+.++++++|.||.++||+++++++|.+|+|+|+++||++.||+|+++++++.+|++|.+++...+.....+...
T Consensus 449 iN~nG~l~VkaT~~g~dttla~IvkLVEEAQ~sKapiQq~aDkia~yFvP~Vi~lS~~t~~~w~~~g~~~~~~~~~~~~~ 528 (951)
T KOG0207|consen 449 INLNGTLLVKATKVGGDTTLAQIVKLVEEAQLSKAPIQQLADKIAGYFVPVVIVLSLATFVVWILIGKIVFKYPRSFFDA 528 (951)
T ss_pred ecCCceEEEEEEeccccchHHHHHHHHHHHHcccchHHHHHHHhhhcCCchhhHHHHHHHHHHHHHccccccCcchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999886433222222257
Q ss_pred HHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhhhcCccccCchHHHhcccccEEEecCCCCcccCceEEEEEEecCC
Q 002354 517 VSLALQLSCSVLVVACPCALGLATPTAMLVGTSLGATRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGS 596 (932)
Q Consensus 517 ~~~~l~~ai~vLvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~ 596 (932)
+..+|+.+++||+++|||+|+||+|+++++++..+|++|+|+|++++||.+.++++|+||||||||+|+|.|.++....
T Consensus 529 ~~~a~~~aisVlviACPCaLgLATPtAvmvatgvgA~nGvLIKGge~LE~~hkv~tVvFDKTGTLT~G~~~V~~~~~~~- 607 (951)
T KOG0207|consen 529 FSHAFQLAISVLVIACPCALGLATPTAVMVATGVGATNGVLIKGGEALEKAHKVKTVVFDKTGTLTEGKPTVVDFKSLS- 607 (951)
T ss_pred HHHHHHhhheEEEEECchhhhcCCceEEEEEechhhhcceEEcCcHHHHHHhcCCEEEEcCCCceecceEEEEEEEecC-
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998872
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCCccccccCCCeEEecCCe--eEEEEcCeEEEeec
Q 002354 597 LTDPNSKQNPIHPLSETEILKFAAGVESNTVHPIGKAIVEAAEFSNCQNVKVADGTFIEEPGSG--TVAIIEDRKVSVGT 674 (932)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~ll~laa~~e~~s~hPi~~Ai~~~a~~~~~~~~~~~~~~~~~~~g~g--~~~~i~~~~~~~Gs 674 (932)
+.++..+++.++++.|..++||+++||++|++..+.........++++.||+| +...+++.++.+|+
T Consensus 608 -----------~~~~~~e~l~~v~a~Es~SeHPig~AIv~yak~~~~~~~~~~~~~~~~~pg~g~~~~~~~~~~~i~iGN 676 (951)
T KOG0207|consen 608 -----------NPISLKEALALVAAMESGSEHPIGKAIVDYAKEKLVEPNPEGVLSFEYFPGEGIYVTVTVDGNEVLIGN 676 (951)
T ss_pred -----------CcccHHHHHHHHHHHhcCCcCchHHHHHHHHHhcccccCccccceeecccCCCcccceEEeeeEEeech
Confidence 23778999999999999999999999999999877544444445788899999 77888999999999
Q ss_pred HHHHhhcCCCCch--hhhHHHHHhCCCeEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHH
Q 002354 675 IDWLRSHGVDTST--FQEVEMEDLMNQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYV 752 (932)
Q Consensus 675 ~~~i~~~~~~~~~--~~~~~~~~~~g~~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~i 752 (932)
.+|+.+++....+ .+..++.+..|++++|+++|+++.|++.++|++|+|+..+|+.||++|++++|+||||..+|.++
T Consensus 677 ~~~~~r~~~~~~~~i~~~~~~~e~~g~tvv~v~vn~~l~gv~~l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~sv 756 (951)
T KOG0207|consen 677 KEWMSRNGCSIPDDILDALTESERKGQTVVYVAVNGQLVGVFALEDQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSV 756 (951)
T ss_pred HHHHHhcCCCCchhHHHhhhhHhhcCceEEEEEECCEEEEEEEeccccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHH
Confidence 9999998875442 22334456789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhhcCEEEeCCChhHHH
Q 002354 753 ASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALASSHIGVAMGGGVGAASEVASVVLMGNRLSQLL 832 (932)
Q Consensus 753 a~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl~~~~~~~i~ 832 (932)
|+++|++ .||+++.|+||.++|+.+|++++.|+|||||+||+|||++|||||+||.|++.|.|+||+|++.||+.+++
T Consensus 757 A~~VGi~--~V~aev~P~~K~~~Ik~lq~~~~~VaMVGDGINDaPALA~AdVGIaig~gs~vAieaADIVLmrn~L~~v~ 834 (951)
T KOG0207|consen 757 AQQVGID--NVYAEVLPEQKAEKIKEIQKNGGPVAMVGDGINDAPALAQADVGIAIGAGSDVAIEAADIVLMRNDLRDVP 834 (951)
T ss_pred HHhhCcc--eEEeccCchhhHHHHHHHHhcCCcEEEEeCCCCccHHHHhhccceeeccccHHHHhhCCEEEEccchhhhH
Confidence 9999987 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHhhhhHHHHHHHhhhhcccccccccccc--
Q 002354 833 VALELSRLTMKTVKQNLWWAFGYNIVGIPIAAGVLLPVTGTMLTPSIAGALMGLSSIGVMANSLLLRLKFSSKQKASF-- 910 (932)
Q Consensus 833 ~~i~~gR~~~~~i~~nl~~a~~~N~i~i~la~~~~~~~~g~~l~P~~aa~~m~~ssl~v~lnsl~l~~~~~~~~~~~~-- 910 (932)
.+++++|+++++||+|+.|+++||+++||+|+|+|.|+. +.|+||.|.++|.+||+.|++||+.|++++.|.-....
T Consensus 835 ~ai~LSrkt~~rIk~N~~~A~~yn~~~IpIAagvF~P~~-~~L~Pw~A~lama~SSvsVv~sSllLk~~k~p~~~~~~~~ 913 (951)
T KOG0207|consen 835 FAIDLSRKTVKRIKLNFVWALIYNLVGIPIAAGVFAPFG-IVLPPWMASLAMAASSVSVVLSSLLLKRYKKPTINKLYRY 913 (951)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhhhheecccCCc-cccCchHHHHHHHhhhHHHhhhHHHHhhccccccccceec
Confidence 999999999999999999999999999999999999975 89999999999999999999999999887766422222
Q ss_pred ----CCCCCCCCCCccccccccccCC
Q 002354 911 ----QAPSSRVNSNVDSHQLMDLKGK 932 (932)
Q Consensus 911 ----k~~~~~~~~~~~~~~~~~~~~~ 932 (932)
+..-.+.-.++++|+=+|-||+
T Consensus 914 e~~~~~~~~~~~~~~~~~~gl~~~~~ 939 (951)
T KOG0207|consen 914 EAETSSSIGQKSESVDLHRGLDDKGR 939 (951)
T ss_pred ccccccccccccccceEEeccccccc
Confidence 2222244455888887776654
No 3
>PRK10671 copA copper exporting ATPase; Provisional
Probab=100.00 E-value=1.6e-115 Score=1083.22 Aligned_cols=724 Identities=33% Similarity=0.512 Sum_probs=628.7
Q ss_pred cEEEEEecCCCChhhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeCCCccccchhhhhhHHHHHHHHHhcCcccccccCC
Q 002354 126 DVIILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAKVIPNWQRQLGEALAKHLTSCGFKSSLRDMG 205 (932)
Q Consensus 126 ~~~~l~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~~~~~~~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~ 205 (932)
.++.+.++||+|++|++.+|+.+.+.+||.++++++.++++.+... .+. +.+.+.++++||.+.+.+++
T Consensus 99 ~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~---~s~--------~~I~~~I~~~Gy~a~~~~~~ 167 (834)
T PRK10671 99 DSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGS---ASP--------QDLVQAVEKAGYGAEAIEDD 167 (834)
T ss_pred ceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEcc---CCH--------HHHHHHHHhcCCCccccccc
Confidence 3678999999999999999999999999999999999999888632 232 56778889999987654321
Q ss_pred CccchhhhHHHHHHHhHhHhhccchhHHHHHHHHHHHHHHH-HHhhhhhhhhHHHhhhhHH-HHHHHHHHHHhccHHHHH
Q 002354 206 TDNFFKVFETKMHEKRNRLKESGRGLAVSWALCAVCLVGHL-SHILGAKASWIHVFHSTGF-HLSLSLFTLLGPGFQLIL 283 (932)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~g~~~~~ 283 (932)
..... ..+...++ ..++..+++.++++++++.++..+ ..++...+.+. ..|+ .+++++|+++|+|||||+
T Consensus 168 ~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~ 239 (834)
T PRK10671 168 AKRRE-RQQETAQA---TMKRFRWQAIVALAVGIPVMVWGMIGDNMMVTADNR----SLWLVIGLITLAVMVFAGGHFYR 239 (834)
T ss_pred cchhh-hhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccch----hHHHHHHHHHHHHHHHhhHHHHH
Confidence 11100 00000011 112233466777666554443221 10000001111 1244 356788999999999999
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHhcc----ccccchhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhc
Q 002354 284 DGVKSLFKGAPNMNTLVGLGAVSSFTVSSLAALVP----KLGWKAFFEEPIMLIAFVLLGKNLEQRAKIKATSDMTGLLG 359 (932)
Q Consensus 284 ~a~~~l~~~~~nmd~Li~l~~~~a~~~s~~~~~~~----~~~~~~yf~~~~~il~~~llg~~le~~~~~ka~~~l~~L~~ 359 (932)
+||++|+++.+|||+|+++|++++|++|++..+.+ ..+.+.||++++++++|+++|+|+|.+++.|+.+.+++|.+
T Consensus 240 ~a~~~l~~~~~~md~l~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~le~~~~~~~~~~~~~L~~ 319 (834)
T PRK10671 240 SAWKSLLNGSATMDTLVALGTGAAWLYSMSVNLWPQWFPMEARHLYYEASAMIIGLINLGHMLEARARQRSSKALEKLLD 319 (834)
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999876542 11225699999999999999999999999999999999999
Q ss_pred cCCCeEEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeeeEEEEeeeeEEeccccccCCCceeecCCCccccceeee
Q 002354 360 ILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAGRSTVDESSFTGEPLPVTKIPESEVAAGSINL 439 (932)
Q Consensus 360 ~~p~~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll~G~~~VDES~LTGES~Pv~K~~g~~V~aGt~v~ 439 (932)
+.|++++++++ |++++|+.++|+|||+|+|++||+||+||+|++|++.||||+|||||.|+.|++||.||+||+|.
T Consensus 320 l~p~~a~~~~~----~~~~~v~~~~l~~GD~v~v~~G~~iP~Dg~v~~g~~~vdeS~lTGEs~pv~k~~gd~V~aGt~~~ 395 (834)
T PRK10671 320 LTPPTARVVTD----EGEKSVPLADVQPGMLLRLTTGDRVPVDGEITQGEAWLDEAMLTGEPIPQQKGEGDSVHAGTVVQ 395 (834)
T ss_pred cCCCEEEEEeC----CcEEEEEHHHcCCCCEEEEcCCCEeeeeEEEEEceEEEeehhhcCCCCCEecCCCCEEEecceec
Confidence 99999999976 46789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEecCCcchHHHHHHHHHHhhcCCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcccchhccCCcHHH
Q 002354 440 NGTLTVEVRRPGGETAMGDIVRLVEEAQSREAPVQRLADQVSGHFTYGVIALSAATFVFWNLFGAHVLPTAIQYGGPVSL 519 (932)
Q Consensus 440 ~G~~~~~V~~tG~~T~~gki~~~v~~a~~~~~~lq~~~d~~~~~~~~~vl~la~~~~i~~~~~~~~~~~~~~~~~~~~~~ 519 (932)
+|.++++|+++|.+|.+++|++++++++.+|+++|+.+|+++.+|+|++++++++++++|++.+.. ..|..
T Consensus 396 ~G~~~~~v~~~g~~t~l~~i~~lv~~a~~~k~~~~~~~d~~a~~~v~~v~~~a~~~~~~~~~~~~~---------~~~~~ 466 (834)
T PRK10671 396 DGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALVSAAIWYFFGPA---------PQIVY 466 (834)
T ss_pred ceeEEEEEEEEcCcChHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---------hHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998765421 12456
Q ss_pred HHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhhhcCccccCchHHHhcccccEEEecCCCCcccCceEEEEEEecCCCCC
Q 002354 520 ALQLSCSVLVVACPCALGLATPTAMLVGTSLGATRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTD 599 (932)
Q Consensus 520 ~l~~ai~vLvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~ 599 (932)
++.+++++|+++|||||++++|+++..++.+++|+||++|+++++|+++++|++|||||||||+|+|+|.++...
T Consensus 467 ~~~~a~~vlv~acPcaL~la~p~a~~~~~~~~a~~gilvk~~~~le~l~~v~~v~fDKTGTLT~g~~~v~~~~~~----- 541 (834)
T PRK10671 467 TLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLDTLVFDKTGTLTEGKPQVVAVKTF----- 541 (834)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHCCeEEecHHHHHhhcCCCEEEEcCCCccccCceEEEEEEcc-----
Confidence 788999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCCccccccCCCeEEecCCeeEEEEcCeEEEeecHHHHh
Q 002354 600 PNSKQNPIHPLSETEILKFAAGVESNTVHPIGKAIVEAAEFSNCQNVKVADGTFIEEPGSGTVAIIEDRKVSVGTIDWLR 679 (932)
Q Consensus 600 ~~~~~~~~~~~~~~~ll~laa~~e~~s~hPi~~Ai~~~a~~~~~~~~~~~~~~~~~~~g~g~~~~i~~~~~~~Gs~~~i~ 679 (932)
++.++.+++.+++++|..+.||+++||+++++.... ....+++..+|+|+.+.+++..+.+|+++++.
T Consensus 542 --------~~~~~~~~l~~a~~~e~~s~hp~a~Ai~~~~~~~~~----~~~~~~~~~~g~Gv~~~~~g~~~~~G~~~~~~ 609 (834)
T PRK10671 542 --------NGVDEAQALRLAAALEQGSSHPLARAILDKAGDMTL----PQVNGFRTLRGLGVSGEAEGHALLLGNQALLN 609 (834)
T ss_pred --------CCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCC----CCcccceEecceEEEEEECCEEEEEeCHHHHH
Confidence 345678899999999999999999999998864322 22357889999999999999999999999998
Q ss_pred hcCCCCchhh-hHHHHHhCCCeEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCC
Q 002354 680 SHGVDTSTFQ-EVEMEDLMNQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGI 758 (932)
Q Consensus 680 ~~~~~~~~~~-~~~~~~~~g~~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi 758 (932)
+.+....... ..+..+.+|.+++++++|++++|++.+.|++||+++++|++|++.|++++|+|||+..++..+++++||
T Consensus 610 ~~~~~~~~~~~~~~~~~~~g~~~v~va~~~~~~g~~~l~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi 689 (834)
T PRK10671 610 EQQVDTKALEAEITAQASQGATPVLLAVDGKAAALLAIRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGI 689 (834)
T ss_pred HcCCChHHHHHHHHHHHhCCCeEEEEEECCEEEEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 7665432222 223345678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhhcCEEEeCCChhHHHHHHHHH
Q 002354 759 PKDKVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALASSHIGVAMGGGVGAASEVASVVLMGNRLSQLLVALELS 838 (932)
Q Consensus 759 ~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl~~~~~~~i~~~i~~g 838 (932)
+ ++++++.|++|.++++.++++++.|+|+|||.||++|++.||+||+||++++.++++||++++++++++|.+++++|
T Consensus 690 ~--~~~~~~~p~~K~~~i~~l~~~~~~v~~vGDg~nD~~al~~Agvgia~g~g~~~a~~~ad~vl~~~~~~~i~~~i~l~ 767 (834)
T PRK10671 690 D--EVIAGVLPDGKAEAIKRLQSQGRQVAMVGDGINDAPALAQADVGIAMGGGSDVAIETAAITLMRHSLMGVADALAIS 767 (834)
T ss_pred C--EEEeCCCHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHHHhCCeeEEecCCCHHHHHhCCEEEecCCHHHHHHHHHHH
Confidence 7 79999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHhhhhHHHHHHHhhhhcc
Q 002354 839 RLTMKTVKQNLWWAFGYNIVGIPIAAGVLLPVTGTMLTPSIAGALMGLSSIGVMANSLLLRL 900 (932)
Q Consensus 839 R~~~~~i~~nl~~a~~~N~i~i~la~~~~~~~~g~~l~P~~aa~~m~~ssl~v~lnsl~l~~ 900 (932)
|+++++|+||+.|++.||+++||+|+|+++|.+|+.++|++|+++|.+||++|++||+||++
T Consensus 768 r~~~~~i~~Nl~~a~~yn~~~i~~a~g~~~p~~g~~l~p~~a~~~m~~ss~~vv~nslrl~~ 829 (834)
T PRK10671 768 RATLRNMKQNLLGAFIYNSLGIPIAAGILWPFTGTLLNPVVAGAAMALSSITVVSNANRLLR 829 (834)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhcccCHHHHHHHhcccceeehhhhHHhcC
Confidence 99999999999999999999999999999998897899999999999999999999999964
No 4
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=100.00 E-value=8.6e-113 Score=1038.89 Aligned_cols=687 Identities=29% Similarity=0.416 Sum_probs=595.2
Q ss_pred ccEEEEEecCCCChhhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeCCCccccchhhhhhHHHHHHHHHhcCcccccccC
Q 002354 125 SDVIILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAKVIPNWQRQLGEALAKHLTSCGFKSSLRDM 204 (932)
Q Consensus 125 ~~~~~l~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~~~~~~~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 204 (932)
..+..++++||+|++|++.+|+.+.+.+||.++++++.++++.+.|++... +.+.+.++++||++.+.++
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~----------~~I~~aI~~~Gy~a~~~~~ 121 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIR----------AQVESAVQKAGFSLRDEQA 121 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccch----------HHHHHHHHhcccccccccc
Confidence 456789999999999999999999999999999999999999999876421 4567788899998764432
Q ss_pred CCccchhhhHHHHHHHhHhHhhccchhHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhHHHHHHHHHHHHhccHHHHHH
Q 002354 205 GTDNFFKVFETKMHEKRNRLKESGRGLAVSWALCAVCLVGHLSHILGAKASWIHVFHSTGFHLSLSLFTLLGPGFQLILD 284 (932)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~ 284 (932)
... + .+.+ .++ ..++.+. + +..++..+ .+....+. ..|+.++++ .++.|||||++
T Consensus 122 ~~~-------~-~~~~--~~~--~~~~~~~--~-~~~~~~~~--~~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~ 176 (741)
T PRK11033 122 AAA-------A-PESR--LKS--ENLPLIT--L-AVMMAISW--GLEQFNHP-----FGQLAFIAT---TLVGLYPIARK 176 (741)
T ss_pred hhh-------h-HHHH--HHH--HHHHHHH--H-HHHHHHHH--HHhhhhhH-----HHHHHHHHH---HHHHHHHHHHH
Confidence 110 0 0000 111 1112211 1 11111111 00000010 013334333 35678999999
Q ss_pred HHHHhhcCCC-CchhHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccCCC
Q 002354 285 GVKSLFKGAP-NMNTLVGLGAVSSFTVSSLAALVPKLGWKAFFEEPIMLIAFVLLGKNLEQRAKIKATSDMTGLLGILPS 363 (932)
Q Consensus 285 a~~~l~~~~~-nmd~Li~l~~~~a~~~s~~~~~~~~~~~~~yf~~~~~il~~~llg~~le~~~~~ka~~~l~~L~~~~p~ 363 (932)
||++++++++ |||+|++++++++++++. |++++|+++|+++|+++|.++++|+++.+++|+++.|.
T Consensus 177 a~~~l~~~~~~~~~~L~~~a~~~a~~~~~-------------~~~a~~i~~l~~~g~~le~~~~~ra~~~~~~L~~l~p~ 243 (741)
T PRK11033 177 ALRLIRSGSPFAIETLMSVAAIGALFIGA-------------TAEAAMVLLLFLIGERLEGYAASRARRGVSALMALVPE 243 (741)
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHHcc-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999885 999999999999987652 45788999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeeeEEEEeeeeEEeccccccCCCceeecCCCccccceeeecCcE
Q 002354 364 KARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAGRSTVDESSFTGEPLPVTKIPESEVAAGSINLNGTL 443 (932)
Q Consensus 364 ~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll~G~~~VDES~LTGES~Pv~K~~g~~V~aGt~v~~G~~ 443 (932)
+++++|+ |++++|++++|+|||+|+|++||+||+||+|++|++.||||+|||||.|+.|++||.||+||+|.+|.+
T Consensus 244 ~a~vir~----g~~~~v~~~~l~~GDiv~v~~G~~IP~Dg~vi~g~~~vdes~lTGEs~Pv~k~~Gd~V~aGt~~~~G~~ 319 (741)
T PRK11033 244 TATRLRD----GEREEVAIADLRPGDVIEVAAGGRLPADGKLLSPFASFDESALTGESIPVERATGEKVPAGATSVDRLV 319 (741)
T ss_pred EEEEEEC----CEEEEEEHHHCCCCCEEEECCCCEEecceEEEECcEEeecccccCCCCCEecCCCCeeccCCEEcCceE
Confidence 9999976 588999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCcchHHHHHHHHHHhhcCCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcccchhccCCcHHHHHHH
Q 002354 444 TVEVRRPGGETAMGDIVRLVEEAQSREAPVQRLADQVSGHFTYGVIALSAATFVFWNLFGAHVLPTAIQYGGPVSLALQL 523 (932)
Q Consensus 444 ~~~V~~tG~~T~~gki~~~v~~a~~~~~~lq~~~d~~~~~~~~~vl~la~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 523 (932)
+++|+++|.+|.++||.+++++++.+++|+|+.+|+++++|+|+++++++++|++|+++. +.+|..++.+
T Consensus 320 ~i~V~~~g~~s~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~~~~v~~~a~~~~~~~~~~~----------~~~~~~~i~~ 389 (741)
T PRK11033 320 TLEVLSEPGASAIDRILHLIEEAEERRAPIERFIDRFSRIYTPAIMLVALLVILVPPLLF----------AAPWQEWIYR 389 (741)
T ss_pred EEEEEeccccCHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------cCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999985542 1346778999
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHHHHhhhcCccccCchHHHhcccccEEEecCCCCcccCceEEEEEEecCCCCCCCCC
Q 002354 524 SCSVLVVACPCALGLATPTAMLVGTSLGATRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSK 603 (932)
Q Consensus 524 ai~vLvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~ 603 (932)
++++|+++|||+|++++|+++..++.+++|+||++|+++++|+++++|+||||||||||+|+|+|.+++..
T Consensus 390 a~svlviacPcaL~latP~a~~~~l~~aar~gilik~~~alE~l~~v~~v~fDKTGTLT~g~~~v~~~~~~--------- 460 (741)
T PRK11033 390 GLTLLLIGCPCALVISTPAAITSGLAAAARRGALIKGGAALEQLGRVTTVAFDKTGTLTEGKPQVTDIHPA--------- 460 (741)
T ss_pred HHHHHHHhchhhhhhhhHHHHHHHHHHHHHCCeEEcCcHHHHHhhCCCEEEEeCCCCCcCCceEEEEEEec---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCCCCCHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCCccccccCCCeEEecCCeeEEEEcCeEEEeecHHHHhhcCC
Q 002354 604 QNPIHPLSETEILKFAAGVESNTVHPIGKAIVEAAEFSNCQNVKVADGTFIEEPGSGTVAIIEDRKVSVGTIDWLRSHGV 683 (932)
Q Consensus 604 ~~~~~~~~~~~ll~laa~~e~~s~hPi~~Ai~~~a~~~~~~~~~~~~~~~~~~~g~g~~~~i~~~~~~~Gs~~~i~~~~~ 683 (932)
+++++++++.+++++|.++.||+++||+++++..+... ...++++..+|+|+.+.+++..+.+|+++++.+..
T Consensus 461 ----~~~~~~~~l~~aa~~e~~s~hPia~Ai~~~a~~~~~~~--~~~~~~~~~~g~Gv~~~~~g~~~~ig~~~~~~~~~- 533 (741)
T PRK11033 461 ----TGISESELLALAAAVEQGSTHPLAQAIVREAQVRGLAI--PEAESQRALAGSGIEGQVNGERVLICAPGKLPPLA- 533 (741)
T ss_pred ----CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCC--CCCcceEEEeeEEEEEEECCEEEEEecchhhhhcc-
Confidence 34567889999999999999999999999998876642 23467788899999999999999999999986521
Q ss_pred CCchhhhHHHHHhCCCeEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCce
Q 002354 684 DTSTFQEVEMEDLMNQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKV 763 (932)
Q Consensus 684 ~~~~~~~~~~~~~~g~~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v 763 (932)
.......+..+.+|.+++++++|++++|++.|+|++|++++++|++|+++|++++|+|||+..++..+|+++||+ +
T Consensus 534 -~~~~~~~~~~~~~g~~~v~va~~~~~~g~i~l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~---~ 609 (741)
T PRK11033 534 -DAFAGQINELESAGKTVVLVLRNDDVLGLIALQDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGID---F 609 (741)
T ss_pred -HHHHHHHHHHHhCCCEEEEEEECCEEEEEEEEecCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC---e
Confidence 111122234556789999999999999999999999999999999999999999999999999999999999995 7
Q ss_pred ecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhhcCEEEeCCChhHHHHHHHHHHHHHH
Q 002354 764 LSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALASSHIGVAMGGGVGAASEVASVVLMGNRLSQLLVALELSRLTMK 843 (932)
Q Consensus 764 ~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl~~~~~~~i~~~i~~gR~~~~ 843 (932)
++++.|+||.++|+.+|+. +.|+|||||+||+|||+.|||||+||++++.++++||+++.++++..+++++++||++++
T Consensus 610 ~~~~~p~~K~~~v~~l~~~-~~v~mvGDgiNDapAl~~A~vgia~g~~~~~a~~~adivl~~~~l~~l~~~i~~sr~~~~ 688 (741)
T PRK11033 610 RAGLLPEDKVKAVTELNQH-APLAMVGDGINDAPAMKAASIGIAMGSGTDVALETADAALTHNRLRGLAQMIELSRATHA 688 (741)
T ss_pred ecCCCHHHHHHHHHHHhcC-CCEEEEECCHHhHHHHHhCCeeEEecCCCHHHHHhCCEEEecCCHHHHHHHHHHHHHHHH
Confidence 8999999999999999965 589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHhhhhHHHHHHHhhhhccc
Q 002354 844 TVKQNLWWAFGYNIVGIPIAAGVLLPVTGTMLTPSIAGALMGLSSIGVMANSLLLRLK 901 (932)
Q Consensus 844 ~i~~nl~~a~~~N~i~i~la~~~~~~~~g~~l~P~~aa~~m~~ssl~v~lnsl~l~~~ 901 (932)
+||||+.|+++||++++|+|+.+ .++||+|+++|.+||++|++||+|+.++
T Consensus 689 ~I~~nl~~a~~~n~~~i~~a~~g-------~~~~~~a~~~~~~ss~~v~~Nslrl~~~ 739 (741)
T PRK11033 689 NIRQNITIALGLKAIFLVTTLLG-------ITGLWLAVLADSGATALVTANALRLLRK 739 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHcChHHHHHHHHHhhccc
Confidence 99999999999999999999743 3689999999999999999999998754
No 5
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=100.00 E-value=6.6e-101 Score=911.29 Aligned_cols=558 Identities=45% Similarity=0.700 Sum_probs=521.6
Q ss_pred ccHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHhccc----cccchhhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 002354 277 PGFQLILDGVKSLFKGAPNMNTLVGLGAVSSFTVSSLAALVPK----LGWKAFFEEPIMLIAFVLLGKNLEQRAKIKATS 352 (932)
Q Consensus 277 ~g~~~~~~a~~~l~~~~~nmd~Li~l~~~~a~~~s~~~~~~~~----~~~~~yf~~~~~il~~~llg~~le~~~~~ka~~ 352 (932)
+|||||++||+++++|++|||+|++++++++|++|+|.++.+. .+++.||++++++++++++|+++|.++++|+++
T Consensus 1 ~g~~~~~~a~~~l~~~~~~md~l~~~~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~le~~~~~~a~~ 80 (562)
T TIGR01511 1 AGRPFYKSAWKALRHKAPNMDTLIALGTTVAYGYSLVALLANQVLTGLHVHTFFDASAMLITFILLGRWLEMLAKGRASD 80 (562)
T ss_pred CcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999887642 234679999999999999999999999999999
Q ss_pred HHHhhhccCCCeEEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeeeEEEEeeeeEEeccccccCCCceeecCCCcc
Q 002354 353 DMTGLLGILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAGRSTVDESSFTGEPLPVTKIPESEV 432 (932)
Q Consensus 353 ~l~~L~~~~p~~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll~G~~~VDES~LTGES~Pv~K~~g~~V 432 (932)
.+++|.++.|+++++++++ |++++|++++|+|||+|.|++||+|||||+|++|++.||||+|||||.|+.|++||.|
T Consensus 81 ~~~~L~~~~p~~a~~~~~~---~~~~~v~~~~l~~GDii~v~~Ge~iP~Dg~v~~g~~~vdes~lTGEs~pv~k~~gd~V 157 (562)
T TIGR01511 81 ALSKLAKLQPSTATLLTKD---GSIEEVPVALLQPGDIVKVLPGEKIPVDGTVIEGESEVDESLVTGESLPVPKKVGDPV 157 (562)
T ss_pred HHHHHHhcCCCEEEEEECC---CeEEEEEHHHCCCCCEEEECCCCEecCceEEEECceEEehHhhcCCCCcEEcCCCCEE
Confidence 9999999999999999864 4678999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeecCcEEEEEEecCCcchHHHHHHHHHHhhcCCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcccchhc
Q 002354 433 AAGSINLNGTLTVEVRRPGGETAMGDIVRLVEEAQSREAPVQRLADQVSGHFTYGVIALSAATFVFWNLFGAHVLPTAIQ 512 (932)
Q Consensus 433 ~aGt~v~~G~~~~~V~~tG~~T~~gki~~~v~~a~~~~~~lq~~~d~~~~~~~~~vl~la~~~~i~~~~~~~~~~~~~~~ 512 (932)
|+||+|.+|.++++|+++|.+|.++||.+++++++.+|+|+|+.+|+++++|+++++++++++|++|.
T Consensus 158 ~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~v~~a~~~k~~~~~~~d~~a~~~~~~v~~~a~~~~~~~~------------ 225 (562)
T TIGR01511 158 IAGTVNGTGSLVVRATATGEDTTLAQIVRLVRQAQQSKAPIQRLADKVAGYFVPVVIAIALITFVIWL------------ 225 (562)
T ss_pred EeeeEECCceEEEEEEEecCCChHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 99999999999999999999999999999999999999999999999999999999999999888773
Q ss_pred cCCcHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhhhcCccccCchHHHhcccccEEEecCCCCcccCceEEEEEE
Q 002354 513 YGGPVSLALQLSCSVLVVACPCALGLATPTAMLVGTSLGATRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVTKVV 592 (932)
Q Consensus 513 ~~~~~~~~l~~ai~vLvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~ 592 (932)
.++.+++++|+++|||+|++++|+++..++.+++++||++|+++++|+++++|+||||||||||+|+|+|.++.
T Consensus 226 ------~~~~~~~svlvvacPcaL~la~p~a~~~~~~~aa~~gIlik~~~~lE~l~~v~~i~fDKTGTLT~g~~~v~~i~ 299 (562)
T TIGR01511 226 ------FALEFAVTVLIIACPCALGLATPTVIAVATGLAAKNGVLIKDGDALERAANIDTVVFDKTGTLTQGKPTVTDVH 299 (562)
T ss_pred ------HHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHCCeEEcChHHHHHhhCCCEEEECCCCCCcCCCEEEEEEe
Confidence 26778999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ecCCCCCCCCCCCCCCCCCHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCCccccccCCCeEEecCCeeEEEEcCeEEEe
Q 002354 593 TSGSLTDPNSKQNPIHPLSETEILKFAAGVESNTVHPIGKAIVEAAEFSNCQNVKVADGTFIEEPGSGTVAIIEDRKVSV 672 (932)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~ll~laa~~e~~s~hPi~~Ai~~~a~~~~~~~~~~~~~~~~~~~g~g~~~~i~~~~~~~ 672 (932)
+. ++.++++++.+++++|+++.||+++||+++++..+.... ...++++.+|+|+.+.++++++.+
T Consensus 300 ~~-------------~~~~~~~~l~~aa~~e~~s~HPia~Ai~~~~~~~~~~~~--~~~~~~~~~g~Gi~~~~~g~~~~i 364 (562)
T TIGR01511 300 VF-------------GDRDRTELLALAAALEAGSEHPLAKAIVSYAKEKGITLV--EVSDFKAIPGIGVEGTVEGTKIQL 364 (562)
T ss_pred cC-------------CCCCHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCcC--CCCCeEEECCceEEEEECCEEEEE
Confidence 65 345578899999999999999999999999987765422 235788999999999999999999
Q ss_pred ecHHHHhhcCCCCchhhhHHHHHhCCCeEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHH
Q 002354 673 GTIDWLRSHGVDTSTFQEVEMEDLMNQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYV 752 (932)
Q Consensus 673 Gs~~~i~~~~~~~~~~~~~~~~~~~g~~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~i 752 (932)
|+++++.+.+..... .+.++.++++++.|++++|.+.++|++||+++++|++|+++|++++|+|||+..+++.+
T Consensus 365 G~~~~~~~~~~~~~~------~~~~g~~~~~~~~~~~~~g~~~~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~i 438 (562)
T TIGR01511 365 GNEKLLGENAIKIDG------KAEQGSTSVLVAVNGELAGVFALEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAV 438 (562)
T ss_pred ECHHHHHhCCCCCCh------hhhCCCEEEEEEECCEEEEEEEecccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHH
Confidence 999999876653211 22468899999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhhcCEEEeCCChhHHH
Q 002354 753 ASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALASSHIGVAMGGGVGAASEVASVVLMGNRLSQLL 832 (932)
Q Consensus 753 a~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl~~~~~~~i~ 832 (932)
++++|++ +++++.|++|.++++.++++++.|+|+|||.||++|+++||+||+||++++.+++.||+++.++++..++
T Consensus 439 a~~lgi~---~~~~~~p~~K~~~v~~l~~~~~~v~~VGDg~nD~~al~~A~vgia~g~g~~~a~~~Advvl~~~~l~~l~ 515 (562)
T TIGR01511 439 AKELGIN---VRAEVLPDDKAALIKELQEKGRVVAMVGDGINDAPALAQADVGIAIGAGTDVAIEAADVVLMRNDLNDVA 515 (562)
T ss_pred HHHcCCc---EEccCChHHHHHHHHHHHHcCCEEEEEeCCCccHHHHhhCCEEEEeCCcCHHHHhhCCEEEeCCCHHHHH
Confidence 9999995 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHH
Q 002354 833 VALELSRLTMKTVKQNLWWAFGYNIVGIPIAAGVLLPVTGTMLTPSIA 880 (932)
Q Consensus 833 ~~i~~gR~~~~~i~~nl~~a~~~N~i~i~la~~~~~~~~g~~l~P~~a 880 (932)
+++++||+++++|+||+.|+++||+++||+|+++++|+ |+.++|++|
T Consensus 516 ~~i~lsr~~~~~i~qn~~~a~~~n~~~i~la~~~~~~~-g~~~~p~~a 562 (562)
T TIGR01511 516 TAIDLSRKTLRRIKQNLLWAFGYNVIAIPIAAGVLYPI-GILLSPAVA 562 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-ccccCCCcC
Confidence 99999999999999999999999999999999999886 778999864
No 6
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=100.00 E-value=2.9e-92 Score=834.71 Aligned_cols=533 Identities=39% Similarity=0.565 Sum_probs=497.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccCCCeEEEEEecCCCC
Q 002354 296 MNTLVGLGAVSSFTVSSLAALVPKLGWKAFFEEPIMLIAFVLLGKNLEQRAKIKATSDMTGLLGILPSKARLLVDNDAKD 375 (932)
Q Consensus 296 md~Li~l~~~~a~~~s~~~~~~~~~~~~~yf~~~~~il~~~llg~~le~~~~~ka~~~l~~L~~~~p~~~~vir~~~~~g 375 (932)
||+|++++++.+++++ .||+. +++++++++++++|.++++|+.+.+++|.++.|.+++|+|+ |
T Consensus 1 ~~~l~~~a~~~~~~~~------------~~~~~-~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~~~~v~r~----g 63 (536)
T TIGR01512 1 VDLLMALAALGAVAIG------------EYLEG-ALLLLLFSIGETLEEYASGRARRALKALMELAPDTARVLRG----G 63 (536)
T ss_pred CcHHHHHHHHHHHHHh------------hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEC----C
Confidence 7999999999999876 24544 78889999999999999999999999999999999999987 5
Q ss_pred cEEEEeCCCccCCCEEEEcCCCEEeeeEEEEeeeeEEeccccccCCCceeecCCCccccceeeecCcEEEEEEecCCcch
Q 002354 376 SIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAGRSTVDESSFTGEPLPVTKIPESEVAAGSINLNGTLTVEVRRPGGETA 455 (932)
Q Consensus 376 ~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll~G~~~VDES~LTGES~Pv~K~~g~~V~aGt~v~~G~~~~~V~~tG~~T~ 455 (932)
+++++++++|+|||+|.|++||+|||||+|++|++.||||+|||||.|+.|++||.||+||.+.+|.++++|++||.+|.
T Consensus 64 ~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~ii~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~v~~G~~~~~V~~~g~~t~ 143 (536)
T TIGR01512 64 SLEEVAVEELKVGDVVVVKPGERVPVDGVVLSGTSTVDESALTGESVPVEKAPGDEVFAGAINLDGVLTIVVTKLPADST 143 (536)
T ss_pred EEEEEEHHHCCCCCEEEEcCCCEeecceEEEeCcEEEEecccCCCCCcEEeCCCCEEEeeeEECCceEEEEEEEeccccH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcccchhccCCcHHHHHHHHHHHHHHHhhhc
Q 002354 456 MGDIVRLVEEAQSREAPVQRLADQVSGHFTYGVIALSAATFVFWNLFGAHVLPTAIQYGGPVSLALQLSCSVLVVACPCA 535 (932)
Q Consensus 456 ~gki~~~v~~a~~~~~~lq~~~d~~~~~~~~~vl~la~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ai~vLvva~P~a 535 (932)
+|||.+++++++.+++|+|+.+++++.+|++++++++++++++|+++.. +..++.+++++++++|||+
T Consensus 144 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~svlv~~~P~a 211 (536)
T TIGR01512 144 IAKIVNLVEEAQSRKAKTQRFIDRFARYYTPVVLAIALAIWLVPGLLKR------------WPFWVYRALVLLVVASPCA 211 (536)
T ss_pred HHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------cHHHHHHHHHHHhhcCccc
Confidence 9999999999999999999999999999999999999998888765431 1237888999999999999
Q ss_pred chhhHHHHHHHHHHHhhhcCccccCchHHHhcccccEEEecCCCCcccCceEEEEEEecCCCCCCCCCCCCCCCCCHHHH
Q 002354 536 LGLATPTAMLVGTSLGATRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLSETEI 615 (932)
Q Consensus 536 L~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~l 615 (932)
|++++|+++..++.+++++||++|+++++|+++++|++|||||||||+|+|+|.++++ .++
T Consensus 212 L~la~~~~~~~~~~~~~k~gilik~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~-------------------~~~ 272 (536)
T TIGR01512 212 LVISAPAAYLSAISAAARHGILIKGGAALEALAKIKTVAFDKTGTLTTGRPKVVDVVP-------------------AEV 272 (536)
T ss_pred cccchHHHHHHHHHHHHHCCeEEcCcHHHHhhcCCCEEEECCCCCCcCCceEEEEeeH-------------------HHH
Confidence 9999999999999999999999999999999999999999999999999999998863 268
Q ss_pred HHHHHHhcccCCCcHHHHHHHHHHhcCCccccccCCCeEEecCCeeEEEEcCeEEEeecHHHHhhcCCCCchhhhHHHHH
Q 002354 616 LKFAAGVESNTVHPIGKAIVEAAEFSNCQNVKVADGTFIEEPGSGTVAIIEDRKVSVGTIDWLRSHGVDTSTFQEVEMED 695 (932)
Q Consensus 616 l~laa~~e~~s~hPi~~Ai~~~a~~~~~~~~~~~~~~~~~~~g~g~~~~i~~~~~~~Gs~~~i~~~~~~~~~~~~~~~~~ 695 (932)
+++++++|.++.||+++||++++++.+ ...++.+.+++|+.+.+++.++.+|+++++.+.+.. ..+
T Consensus 273 l~~a~~~e~~~~hp~~~Ai~~~~~~~~------~~~~~~~~~g~gi~~~~~g~~~~ig~~~~~~~~~~~--------~~~ 338 (536)
T TIGR01512 273 LRLAAAAEQASSHPLARAIVDYARKRE------NVESVEEVPGEGVRAVVDGGEVRIGNPRSLEAAVGA--------RPE 338 (536)
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHhcC------CCcceEEecCCeEEEEECCeEEEEcCHHHHhhcCCc--------chh
Confidence 999999999999999999999988754 235677889999999999999999999998775532 223
Q ss_pred hCCCeEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCC-eEEEEcCCCHHHHHHHHHHcCCCCCceecccChhhHHH
Q 002354 696 LMNQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGI-GVYMLSGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKR 774 (932)
Q Consensus 696 ~~g~~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi-~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~ 774 (932)
.++.+.++++.|+.+.|.+.++|++||+++++|++|+++|+ +++|+|||+..++..+++++|++ ++|+++.|++|.+
T Consensus 339 ~~~~~~~~v~~~~~~~g~i~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~--~~f~~~~p~~K~~ 416 (536)
T TIGR01512 339 SAGKTIVHVARDGTYLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGID--EVHAELLPEDKLE 416 (536)
T ss_pred hCCCeEEEEEECCEEEEEEEEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCCh--hhhhccCcHHHHH
Confidence 45778999999999999999999999999999999999999 99999999999999999999997 7899999999999
Q ss_pred HHHHHhhCCCEEEEEcCCcccHHHHHhCCeeEEec-CchHHHHhhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002354 775 FINELQNDENVVAMVGDGINDAAALASSHIGVAMG-GGVGAASEVASVVLMGNRLSQLLVALELSRLTMKTVKQNLWWAF 853 (932)
Q Consensus 775 ~v~~l~~~g~~v~~vGDg~ND~~al~~A~vgIa~~-~~~~~a~~~ad~vl~~~~~~~i~~~i~~gR~~~~~i~~nl~~a~ 853 (932)
+++.++++++.|+|+|||.||++|++.||+||++| ++++.+++.||+++.++++..+.+++++||+++++|+||+.|++
T Consensus 417 ~i~~l~~~~~~v~~vGDg~nD~~al~~A~vgia~g~~~~~~~~~~ad~vl~~~~l~~l~~~i~~~r~~~~~i~~nl~~a~ 496 (536)
T TIGR01512 417 IVKELREKYGPVAMVGDGINDAPALAAADVGIAMGASGSDVAIETADVVLLNDDLSRLPQAIRLARRTRRIVKQNVVIAL 496 (536)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHHHhCCEEEEeCCCccHHHHHhCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhccccccccHHHHHHHhhhhHHHHHHHhhhhc
Q 002354 854 GYNIVGIPIAAGVLLPVTGTMLTPSIAGALMGLSSIGVMANSLLLR 899 (932)
Q Consensus 854 ~~N~i~i~la~~~~~~~~g~~l~P~~aa~~m~~ssl~v~lnsl~l~ 899 (932)
.||+++||+|+.+ +++||+|+++|.+||++|++||+|++
T Consensus 497 ~~n~~~i~~a~~G-------~~~p~~aa~~m~~ss~~v~~ns~r~~ 535 (536)
T TIGR01512 497 GIILLLILLALFG-------VLPLWLAVLGHEGSTVLVILNALRLL 535 (536)
T ss_pred HHHHHHHHHHHHh-------hccHHHHHHHHcChHHHHHHHHHhhc
Confidence 9999999999743 48999999999999999999999985
No 7
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=100.00 E-value=6.7e-92 Score=836.65 Aligned_cols=551 Identities=44% Similarity=0.678 Sum_probs=505.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccCCCeEEEEEecCCCC
Q 002354 296 MNTLVGLGAVSSFTVSSLAALVPKLGWKAFFEEPIMLIAFVLLGKNLEQRAKIKATSDMTGLLGILPSKARLLVDNDAKD 375 (932)
Q Consensus 296 md~Li~l~~~~a~~~s~~~~~~~~~~~~~yf~~~~~il~~~llg~~le~~~~~ka~~~l~~L~~~~p~~~~vir~~~~~g 375 (932)
||+|++++++.+|++|. |.+++++++++++++++|.++++|+++.+++|.+..|.+++++|++ |
T Consensus 1 ~d~l~~~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~v~r~~---g 64 (556)
T TIGR01525 1 MDLLMALATIAAYAMGL-------------VLEGALLLFLFLLGETLEERAKGRASDALSALLALAPSTARVLQGD---G 64 (556)
T ss_pred CcHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECC---C
Confidence 89999999999999874 3467899999999999999999999999999999999999999873 3
Q ss_pred cEEEEeCCCccCCCEEEEcCCCEEeeeEEEEeeeeEEeccccccCCCceeecCCCccccceeeecCcEEEEEEecCCcch
Q 002354 376 SIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAGRSTVDESSFTGEPLPVTKIPESEVAAGSINLNGTLTVEVRRPGGETA 455 (932)
Q Consensus 376 ~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll~G~~~VDES~LTGES~Pv~K~~g~~V~aGt~v~~G~~~~~V~~tG~~T~ 455 (932)
++++|+.++|+|||+|.+++||+|||||+|++|++.||||+|||||.|+.|++|+.||+||.+.+|.++++|+++|.+|+
T Consensus 65 ~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~vi~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~v~~g~~~~~v~~~g~~t~ 144 (556)
T TIGR01525 65 SEEEVPVEELQVGDIVIVRPGERIPVDGVVISGESEVDESALTGESMPVEKKEGDEVFAGTINGDGSLTIRVTKLGEDST 144 (556)
T ss_pred eEEEEEHHHCCCCCEEEECCCCEeccceEEEecceEEeehhccCCCCCEecCCcCEEeeceEECCceEEEEEEEecccCH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcccchhccCCcHHHHHHHHHHHHHHHhhhc
Q 002354 456 MGDIVRLVEEAQSREAPVQRLADQVSGHFTYGVIALSAATFVFWNLFGAHVLPTAIQYGGPVSLALQLSCSVLVVACPCA 535 (932)
Q Consensus 456 ~gki~~~v~~a~~~~~~lq~~~d~~~~~~~~~vl~la~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ai~vLvva~P~a 535 (932)
+|+|.+++++++.+++|+|+.+++++.+|+++++++++++|++|++.+. . .++.+++++++++|||+
T Consensus 145 ~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~a~~~~~~~~~~~~-----------~--~~~~~~~~vlv~~~P~a 211 (556)
T TIGR01525 145 LAQIVKLVEEAQSSKAPIQRLADRIASYYVPAVLAIALLTFVVWLALGA-----------L--GALYRALAVLVVACPCA 211 (556)
T ss_pred HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------c--hHHHHHHHHHhhccccc
Confidence 9999999999999999999999999999999999999999999876532 1 57889999999999999
Q ss_pred chhhHHHHHHHHHHHhhhcCccccCchHHHhcccccEEEecCCCCcccCceEEEEEEecCCCCCCCCCCCCCCCCCHHHH
Q 002354 536 LGLATPTAMLVGTSLGATRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLSETEI 615 (932)
Q Consensus 536 L~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~l 615 (932)
|++++|+++..++.+++++||++|+++++|+++++|++|||||||||+|+|+|.++...+.. ..+++++
T Consensus 212 l~l~~~~~~~~~~~~~~~~gilvk~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~~-----------~~~~~~~ 280 (556)
T TIGR01525 212 LGLATPVAILVAIGVAARRGILIKGGDALEKLAKVKTVVFDKTGTLTTGKPTVVDVEPLDDA-----------SISEEEL 280 (556)
T ss_pred hhehhHHHHHHHHHHHHHCCceecCchHHHHhhcCCEEEEeCCCCCcCCceEEEEEEecCCC-----------CccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999865210 0126788
Q ss_pred HHHHHHhcccCCCcHHHHHHHHHHhcCCccccccCC-CeEEecCCeeEEEEcC-eEEEeecHHHHhhcCCCCchh-hhHH
Q 002354 616 LKFAAGVESNTVHPIGKAIVEAAEFSNCQNVKVADG-TFIEEPGSGTVAIIED-RKVSVGTIDWLRSHGVDTSTF-QEVE 692 (932)
Q Consensus 616 l~laa~~e~~s~hPi~~Ai~~~a~~~~~~~~~~~~~-~~~~~~g~g~~~~i~~-~~~~~Gs~~~i~~~~~~~~~~-~~~~ 692 (932)
+.+++.+|.++.||+++||+++++..+.+... . ++.+.+++|+.+.+++ .++.+|+++++.......... +..+
T Consensus 281 l~~a~~~e~~~~hp~~~Ai~~~~~~~~~~~~~---~~~~~~~~~~gi~~~~~g~~~~~lg~~~~~~~~~~~~~~~~~~~~ 357 (556)
T TIGR01525 281 LALAAALEQSSSHPLARAIVRYAKKRGLELPK---QEDVEEVPGKGVEATVDGQEEVRIGNPRLLELAAEPISASPDLLN 357 (556)
T ss_pred HHHHHHHhccCCChHHHHHHHHHHhcCCCccc---ccCeeEecCCeEEEEECCeeEEEEecHHHHhhcCCCchhhHHHHH
Confidence 99999999999999999999999887654221 3 6778899999999999 799999999984322221111 1222
Q ss_pred HHHhCCCeEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCC-CeEEEEcCCCHHHHHHHHHHcCCCCCceecccChhh
Q 002354 693 MEDLMNQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQG-IGVYMLSGDKKNSAEYVASLVGIPKDKVLSGVKPNE 771 (932)
Q Consensus 693 ~~~~~g~~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~G-i~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~~~p~~ 771 (932)
....++.++++++.|++++|.+.++|+++|+++++|++|+++| ++++|+|||+..++..+++++|++ ++|+++.|++
T Consensus 358 ~~~~~g~~~~~v~~~~~~~g~i~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~--~~f~~~~p~~ 435 (556)
T TIGR01525 358 EGESQGKTVVFVAVDGELLGVIALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGID--EVHAELLPED 435 (556)
T ss_pred HHhhCCcEEEEEEECCEEEEEEEecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCC--eeeccCCHHH
Confidence 3456788999999999999999999999999999999999999 999999999999999999999997 8999999999
Q ss_pred HHHHHHHHhhCCCEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 002354 772 KKRFINELQNDENVVAMVGDGINDAAALASSHIGVAMGGGVGAASEVASVVLMGNRLSQLLVALELSRLTMKTVKQNLWW 851 (932)
Q Consensus 772 K~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl~~~~~~~i~~~i~~gR~~~~~i~~nl~~ 851 (932)
|.++++.+++.++.|+|+|||.||++|+++||+||++|++++.+++.||+++.++++..+.+++++||+++++|+||+.|
T Consensus 436 K~~~v~~l~~~~~~v~~vGDg~nD~~al~~A~vgia~g~~~~~~~~~Ad~vi~~~~~~~l~~~i~~~r~~~~~i~~nl~~ 515 (556)
T TIGR01525 436 KLAIVKELQEEGGVVAMVGDGINDAPALAAADVGIAMGAGSDVAIEAADIVLLNDDLSSLPTAIDLSRKTRRIIKQNLAW 515 (556)
T ss_pred HHHHHHHHHHcCCEEEEEECChhHHHHHhhCCEeEEeCCCCHHHHHhCCEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccccccccHH-HHHHHhhhhHHHHHHHhhhh
Q 002354 852 AFGYNIVGIPIAAGVLLPVTGTMLTPS-IAGALMGLSSIGVMANSLLL 898 (932)
Q Consensus 852 a~~~N~i~i~la~~~~~~~~g~~l~P~-~aa~~m~~ssl~v~lnsl~l 898 (932)
+++||++++++|+++ +++|+ +|+++|.+||++|++||+|+
T Consensus 516 a~~~N~~~i~~a~~g-------~~~p~~~aa~~m~~ss~~v~lns~r~ 556 (556)
T TIGR01525 516 ALGYNLVAIPLAAGG-------LLPLWLLAVLLHEGSTVLVVLNSLRL 556 (556)
T ss_pred HHHHHHHHHHHHHHH-------hcCHHHHHHHHHhchHHHHHHHhhcC
Confidence 999999999999865 37896 99999999999999999985
No 8
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=100.00 E-value=1.4e-89 Score=838.12 Aligned_cols=507 Identities=24% Similarity=0.299 Sum_probs=446.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccCCCeEEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeeeEEEEe
Q 002354 328 EPIMLIAFVLLGKNLEQRAKIKATSDMTGLLGILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRA 407 (932)
Q Consensus 328 ~~~~il~~~llg~~le~~~~~ka~~~l~~L~~~~p~~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll~ 407 (932)
++++++++++++..++.++++|+++.+++|.++.|.+++|+|+ |++++|+++||+|||+|.|++||+|||||+|++
T Consensus 57 ~~~~i~~~~~i~~~i~~~qe~~a~~~~~~L~~~~~~~~~V~Rd----g~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~vi~ 132 (755)
T TIGR01647 57 DFVIILGLLLLNATIGFIEENKAGNAVEALKQSLAPKARVLRD----GKWQEIPASELVPGDVVRLKIGDIVPADCRLFE 132 (755)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC----CEEEEEEhhhCcCCCEEEECCCCEEeceEEEEe
Confidence 4566777788888889999999999999999999999999987 589999999999999999999999999999999
Q ss_pred ee-eEEeccccccCCCceeecCCCccccceeeecCcEEEEEEecCCcchHHHHHHHHHHhhcCCChHHHHHHHHHhhHHH
Q 002354 408 GR-STVDESSFTGEPLPVTKIPESEVAAGSINLNGTLTVEVRRPGGETAMGDIVRLVEEAQSREAPVQRLADQVSGHFTY 486 (932)
Q Consensus 408 G~-~~VDES~LTGES~Pv~K~~g~~V~aGt~v~~G~~~~~V~~tG~~T~~gki~~~v~~a~~~~~~lq~~~d~~~~~~~~ 486 (932)
|+ +.||||+|||||.|+.|.+||.+|+||.+.+|+++++|++||.+|.+|+|.+++++++.+++|+|+.+++++.++++
T Consensus 133 g~~~~VDeS~LTGES~PV~K~~~~~v~aGT~v~~G~~~~~V~~tG~~T~~g~i~~lv~~~~~~~~~lq~~~~~i~~~~~~ 212 (755)
T TIGR01647 133 GDYIQVDQAALTGESLPVTKKTGDIAYSGSTVKQGEAEAVVTATGMNTFFGKAAALVQSTETGSGHLQKILSKIGLFLIV 212 (755)
T ss_pred cCceEEEcccccCCccceEeccCCeeeccCEEEccEEEEEEEEcCCccHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHH
Confidence 98 99999999999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCcccchhccCCcHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhhhcCccccCchHHHh
Q 002354 487 GVIALSAATFVFWNLFGAHVLPTAIQYGGPVSLALQLSCSVLVVACPCALGLATPTAMLVGTSLGATRGLLLRGGNILEK 566 (932)
Q Consensus 487 ~vl~la~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ai~vLvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~ 566 (932)
++++++++++++|++.. +.+|..++.+++++++++|||+|++++|+++..+..+++|+|+++|+++++|+
T Consensus 213 ~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~i~vlv~a~P~~Lp~~~~~~la~g~~r~ak~gilvk~l~alE~ 282 (755)
T TIGR01647 213 LIGVLVLIELVVLFFGR----------GESFREGLQFALVLLVGGIPIAMPAVLSVTMAVGAAELAKKKAIVTRLTAIEE 282 (755)
T ss_pred HHHHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhCCeEEcccHHHHh
Confidence 99999888888876521 23567889999999999999999999999999999999999999999999999
Q ss_pred cccccEEEecCCCCcccCceEEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHh-cccCCCcHHHHHHHHHHhcCCcc
Q 002354 567 FAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLSETEILKFAAGV-ESNTVHPIGKAIVEAAEFSNCQN 645 (932)
Q Consensus 567 lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ll~laa~~-e~~s~hPi~~Ai~~~a~~~~~~~ 645 (932)
+|++|+||||||||||+|+|+|.+++..+ +++++++++.+++.. +..+.||+++|+++++...+...
T Consensus 283 lg~v~~i~~DKTGTLT~~~~~v~~~~~~~------------~~~~~~~~l~~a~~~~~~~~~~pi~~Ai~~~~~~~~~~~ 350 (755)
T TIGR01647 283 LAGMDILCSDKTGTLTLNKLSIDEILPFF------------NGFDKDDVLLYAALASREEDQDAIDTAVLGSAKDLKEAR 350 (755)
T ss_pred ccCCcEEEecCCCccccCceEEEEEEecC------------CCCCHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999998752 124567788887755 47789999999999876543100
Q ss_pred ccccCCCeEEe----cCCeeEEEEc----CeE--EEeecHHHHhhcCCCCchh-----hhHHHHHhCCCeEEEEEE----
Q 002354 646 VKVADGTFIEE----PGSGTVAIIE----DRK--VSVGTIDWLRSHGVDTSTF-----QEVEMEDLMNQSLVYVGV---- 706 (932)
Q Consensus 646 ~~~~~~~~~~~----~g~g~~~~i~----~~~--~~~Gs~~~i~~~~~~~~~~-----~~~~~~~~~g~~~~~va~---- 706 (932)
.......+. .+++....++ ++. +.||+++.+.+.|...... +..++...+|.+++++++
T Consensus 351 --~~~~~~~~~pf~~~~k~~~~~v~~~~~g~~~~~~kGa~e~il~~c~~~~~~~~~~~~~~~~~~~~G~rvl~vA~~~~e 428 (755)
T TIGR01647 351 --DGYKVLEFVPFDPVDKRTEATVEDPETGKRFKVTKGAPQVILDLCDNKKEIEEKVEEKVDELASRGYRALGVARTDEE 428 (755)
T ss_pred --hcCceEEEeccCCCCCeEEEEEEeCCCceEEEEEeCChHHHHHhcCCcHHHHHHHHHHHHHHHhCCCEEEEEEEEcCC
Confidence 000111111 3566666653 433 6799999999988643211 122335667999999998
Q ss_pred -CCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC------------------------
Q 002354 707 -DNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD------------------------ 761 (932)
Q Consensus 707 -~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~------------------------ 761 (932)
+.+++|+++|+|++||+++++|++||++||+++|+|||++.+|.++|+++||...
T Consensus 429 ~~l~~~Gli~l~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~~~~~~~l~~~~~~~~~~~~~~~~~ 508 (755)
T TIGR01647 429 GRWHFLGLLPLFDPPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGTNIYTADVLLKGDNRDDLPSGELGEM 508 (755)
T ss_pred CCcEEEEEeeccCCChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCcCHHHhcCCcchhhCCHHHHHHH
Confidence 2389999999999999999999999999999999999999999999999999641
Q ss_pred ----ceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhhcCEEEeCCChhHHHHHHHH
Q 002354 762 ----KVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALASSHIGVAMGGGVGAASEVASVVLMGNRLSQLLVALEL 837 (932)
Q Consensus 762 ----~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl~~~~~~~i~~~i~~ 837 (932)
.+|+|++|+||.++|+.||++|+.|+|+|||+||+|||++||||||||+|+|.|+++||+|+++|++..|++++++
T Consensus 509 ~~~~~vfAr~~Pe~K~~iV~~lq~~G~~VamvGDGvNDapAL~~AdVGIAm~~gtdvAkeaADivLl~d~l~~I~~ai~~ 588 (755)
T TIGR01647 509 VEDADGFAEVFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKADVGIAVAGATDAARSAADIVLTEPGLSVIVDAILE 588 (755)
T ss_pred HHhCCEEEecCHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHhCCeeEEecCCcHHHHHhCCEEEEcCChHHHHHHHHH
Confidence 2899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002354 838 SRLTMKTVKQNLWWAFGYNIVGIPI 862 (932)
Q Consensus 838 gR~~~~~i~~nl~~a~~~N~i~i~l 862 (932)
||++++|||||+.|.++.|+..+..
T Consensus 589 gR~~~~ni~k~i~~~~~~n~~~~~~ 613 (755)
T TIGR01647 589 SRKIFQRMKSYVIYRIAETIRIVFF 613 (755)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHH
Confidence 9999999999999999999975543
No 9
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=1.9e-87 Score=793.53 Aligned_cols=493 Identities=25% Similarity=0.315 Sum_probs=419.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhccCCC-eEEE-EEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeeeEEEEeee
Q 002354 332 LIAFVLLGKNLEQRAKIKATSDMTGLLGILPS-KARL-LVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAGR 409 (932)
Q Consensus 332 il~~~llg~~le~~~~~ka~~~l~~L~~~~p~-~~~v-ir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll~G~ 409 (932)
+++..+++.|+|.++++|+++.+++|+++.|+ ++++ .|+ |++++|++++|+|||+|.|++||+||+||+|++|+
T Consensus 72 l~~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~a~~v~rd----g~~~~I~a~eLv~GDiV~v~~Gd~IPaDG~vieG~ 147 (673)
T PRK14010 72 LLLTLVFANFSEALAEGRGKAQANALRQTQTEMKARRIKQD----GSYEMIDASDLKKGHIVRVATGEQIPNDGKVIKGL 147 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEEeC----CEEEEEEHHHcCCCCEEEECCCCcccCCeEEEEcc
Confidence 33445689999999999999999999999986 7874 444 58899999999999999999999999999999999
Q ss_pred eEEeccccccCCCceeecCC---CccccceeeecCcEEEEEEecCCcchHHHHHHHHHHhhcCCChHHHHHHHHHhhHHH
Q 002354 410 STVDESSFTGEPLPVTKIPE---SEVAAGSINLNGTLTVEVRRPGGETAMGDIVRLVEEAQSREAPVQRLADQVSGHFTY 486 (932)
Q Consensus 410 ~~VDES~LTGES~Pv~K~~g---~~V~aGt~v~~G~~~~~V~~tG~~T~~gki~~~v~~a~~~~~~lq~~~d~~~~~~~~ 486 (932)
+.||||+|||||.|+.|++| +.||+||.+.+|+++++|+++|.+|++|||++++++++.+|+|+|...+.+...+
T Consensus 148 ~~VDESaLTGES~PV~K~~g~d~~~V~aGT~v~~G~~~i~Vta~g~~T~lgki~~lve~a~~~ktp~e~~l~~l~~~l-- 225 (673)
T PRK14010 148 ATVDESAITGESAPVIKESGGDFDNVIGGTSVASDWLEVEITSEPGHSFLDKMIGLVEGATRKKTPNEIALFTLLMTL-- 225 (673)
T ss_pred eEEecchhcCCCCceeccCCCccCeeecCceeecceEEEEEEEecccCHHHHHHHHHhhccccCCHHHHHHHHHHHHH--
Confidence 99999999999999999999 8899999999999999999999999999999999999999999996655443222
Q ss_pred HHHHHHHHHHHHHHhhccCcccchhccCCcHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhhhcCccccCchHHHh
Q 002354 487 GVIALSAATFVFWNLFGAHVLPTAIQYGGPVSLALQLSCSVLVVACPCALGLATPTAMLVGTSLGATRGLLLRGGNILEK 566 (932)
Q Consensus 487 ~vl~la~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ai~vLvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~ 566 (932)
.+..+++++|++.... + .++...+...++++++.|||+|+..+|++...++.+++|+|+++|+++++|.
T Consensus 226 ---~ii~l~~~~~~~~~~~------~--~~~~~~~~~~val~V~~IP~aL~~~~~~~~~~g~~r~ak~gvLvk~~~avE~ 294 (673)
T PRK14010 226 ---TIIFLVVILTMYPLAK------F--LNFNLSIAMLIALAVCLIPTTIGGLLSAIGIAGMDRVTQFNILAKSGRSVET 294 (673)
T ss_pred ---hHHHHHHHHHHHHHHh------h--ccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCEEEeCcHHHHH
Confidence 2222222222211000 0 0223456677788888899999999999999999999999999999999999
Q ss_pred cccccEEEecCCCCcccCceEEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCCccc
Q 002354 567 FAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLSETEILKFAAGVESNTVHPIGKAIVEAAEFSNCQNV 646 (932)
Q Consensus 567 lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ll~laa~~e~~s~hPi~~Ai~~~a~~~~~~~~ 646 (932)
+|++|++|||||||||+|++.+.++.+. ++.+.++++++++.++..+.||+++||+++++..+.+..
T Consensus 295 lg~v~vI~~DKTGTLT~Gn~~~~~~~~~-------------~~~~~~~ll~~a~~~~~~s~~P~~~AIv~~a~~~~~~~~ 361 (673)
T PRK14010 295 CGDVNVLILDKTGTITYGNRMADAFIPV-------------KSSSFERLVKAAYESSIADDTPEGRSIVKLAYKQHIDLP 361 (673)
T ss_pred hhCCCEEEEeCCCcCCCCCeEEEEEEeC-------------CCccHHHHHHHHHHhcCCCCChHHHHHHHHHHHcCCCch
Confidence 9999999999999999999988887653 334567788888888889999999999999987665421
Q ss_pred cccCC--CeEEe-cCCeeEEEEcCeEEEeecHHHHhhcCCCC----c-hhh-hHHHHHhCCCeEEEEEECCEEEEEEEec
Q 002354 647 KVADG--TFIEE-PGSGTVAIIEDRKVSVGTIDWLRSHGVDT----S-TFQ-EVEMEDLMNQSLVYVGVDNMLAGLIYVE 717 (932)
Q Consensus 647 ~~~~~--~~~~~-~g~g~~~~i~~~~~~~Gs~~~i~~~~~~~----~-~~~-~~~~~~~~g~~~~~va~~~~~lG~i~l~ 717 (932)
....+ .|... .++|+ .++++.+.||+++++.+.|... . ..+ ..+..+.+|.++++++.|++++|++.++
T Consensus 362 ~~~~~~~pF~~~~k~~gv--~~~g~~i~kGa~~~il~~~~~~g~~~~~~~~~~~~~~a~~G~~~l~v~~~~~~lG~i~l~ 439 (673)
T PRK14010 362 QEVGEYIPFTAETRMSGV--KFTTREVYKGAPNSMVKRVKEAGGHIPVDLDALVKGVSKKGGTPLVVLEDNEILGVIYLK 439 (673)
T ss_pred hhhcceeccccccceeEE--EECCEEEEECCHHHHHHHhhhcCCCCchHHHHHHHHHHhCCCeEEEEEECCEEEEEEEee
Confidence 11111 12111 23444 3677889999999998766421 1 111 1233456788999999999999999999
Q ss_pred ccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHH
Q 002354 718 DRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAA 797 (932)
Q Consensus 718 D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~ 797 (932)
|++|||++++|++||++||+++|+|||++.+|.++|+++||+ ++|++++||||.++|+.+|++|+.|+|+|||+||+|
T Consensus 440 Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~--~v~A~~~PedK~~iV~~lQ~~G~~VaMtGDGvNDAP 517 (673)
T PRK14010 440 DVIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVD--RFVAECKPEDKINVIREEQAKGHIVAMTGDGTNDAP 517 (673)
T ss_pred cCCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCc--eEEcCCCHHHHHHHHHHHHhCCCEEEEECCChhhHH
Confidence 999999999999999999999999999999999999999998 799999999999999999999999999999999999
Q ss_pred HHHhCCeeEEecCchHHHHhhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002354 798 ALASSHIGVAMGGGVGAASEVASVVLMGNRLSQLLVALELSRLTMKTVKQNLWWAFGYNIV 858 (932)
Q Consensus 798 al~~A~vgIa~~~~~~~a~~~ad~vl~~~~~~~i~~~i~~gR~~~~~i~~nl~~a~~~N~i 858 (932)
||++||||||||+|+|.||++||+|+++||+..|.+++++||++|.|+++.+.|.++.|+.
T Consensus 518 ALa~ADVGIAMgsGTdvAkeAADiVLldd~ls~Iv~av~~gR~i~~n~~~~~~f~~~~~~~ 578 (673)
T PRK14010 518 ALAEANVGLAMNSGTMSAKEAANLIDLDSNPTKLMEVVLIGKQLLMTRGSLTTFSIANDIA 578 (673)
T ss_pred HHHhCCEEEEeCCCCHHHHHhCCEEEcCCCHHHHHHHHHHHHHHHHHHHHHHheeeeccHH
Confidence 9999999999999999999999999999999999999999999999999999999998863
No 10
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=100.00 E-value=2.6e-87 Score=827.25 Aligned_cols=559 Identities=21% Similarity=0.272 Sum_probs=465.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccCCCeEEEEEecCC--CCcEEEEeCCCccCCCEEEEcCCCEEeeeEE
Q 002354 327 EEPIMLIAFVLLGKNLEQRAKIKATSDMTGLLGILPSKARLLVDNDA--KDSIIEVPCNSLHVGDHIVVLPGDRIPADGV 404 (932)
Q Consensus 327 ~~~~~il~~~llg~~le~~~~~ka~~~l~~L~~~~p~~~~vir~~~~--~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgv 404 (932)
..+++++++++++.+++.++++|+++.+++|+++.|.+++|+|+++. +|++++|++++|+|||+|.|++||+|||||+
T Consensus 123 ~~a~~I~~iv~i~~~i~~~qe~ra~~~~~~L~~l~~~~a~ViR~g~~~~~g~~~~I~~~eLvpGDiV~l~~Gd~IPaDg~ 202 (902)
T PRK10517 123 FAAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVLRVINDKGENGWLEIPIDQLVPGDIIKLAAGDMIPADLR 202 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCccCCCCeEEEEEHHhCCCCCEEEECCCCEEeeeEE
Confidence 35677888899999999999999999999999999999999987321 1578999999999999999999999999999
Q ss_pred EEeee-eEEeccccccCCCceeecCCC-------------ccccceeeecCcEEEEEEecCCcchHHHHHHHHHHhhcCC
Q 002354 405 VRAGR-STVDESSFTGEPLPVTKIPES-------------EVAAGSINLNGTLTVEVRRPGGETAMGDIVRLVEEAQSRE 470 (932)
Q Consensus 405 ll~G~-~~VDES~LTGES~Pv~K~~g~-------------~V~aGt~v~~G~~~~~V~~tG~~T~~gki~~~v~~a~~~~ 470 (932)
|++|+ +.||||+|||||.|+.|.+++ .+|+||.+.+|+++++|++||.+|.+|+|.+++++++.++
T Consensus 203 li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~vV~atG~~T~~GkI~~~v~~~~~~~ 282 (902)
T PRK10517 203 ILQARDLFVAQASLTGESLPVEKFATTRQPEHSNPLECDTLCFMGTNVVSGTAQAVVIATGANTWFGQLAGRVSEQDSEP 282 (902)
T ss_pred EEEcCceEEEecCcCCCCCceecccccccccccCccccccceeeCceEeeeeEEEEEEEeccccHHHHHHHHhhccCCCC
Confidence 99996 699999999999999999875 6999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcccchhccCCcHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHH
Q 002354 471 APVQRLADQVSGHFTYGVIALSAATFVFWNLFGAHVLPTAIQYGGPVSLALQLSCSVLVVACPCALGLATPTAMLVGTSL 550 (932)
Q Consensus 471 ~~lq~~~d~~~~~~~~~vl~la~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ai~vLvva~P~aL~la~p~a~~~~~~~ 550 (932)
+|+|+.+|++++++..++++++.++++++.+.. .+|..++.+++++++++|||+|+++++++++.+..+
T Consensus 283 t~lq~~~~~i~~~l~~~~~~~~~~v~~i~~~~~-----------~~~~~~l~~alsv~V~~~Pe~LP~~vt~~la~g~~~ 351 (902)
T PRK10517 283 NAFQQGISRVSWLLIRFMLVMAPVVLLINGYTK-----------GDWWEAALFALSVAVGLTPEMLPMIVTSTLARGAVK 351 (902)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhc-----------CCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 999999999999999888888887777654432 246778999999999999999999999999999999
Q ss_pred hhhcCccccCchHHHhcccccEEEecCCCCcccCceEEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHh---cccCC
Q 002354 551 GATRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLSETEILKFAAGV---ESNTV 627 (932)
Q Consensus 551 ~a~~gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ll~laa~~---e~~s~ 627 (932)
++|+|+++|+++++|++|++|+||||||||||+|+|+|.++... .+.++++++++++.. +....
T Consensus 352 mak~~ilVk~l~aiE~lg~v~vic~DKTGTLT~n~m~V~~~~~~-------------~~~~~~~ll~~a~l~~~~~~~~~ 418 (902)
T PRK10517 352 LSKQKVIVKRLDAIQNFGAMDILCTDKTGTLTQDKIVLENHTDI-------------SGKTSERVLHSAWLNSHYQTGLK 418 (902)
T ss_pred HHhCCcEEecchhhhhccCCCEEEecCCCccccceEEEEEEecC-------------CCCCHHHHHHHHHhcCCcCCCCC
Confidence 99999999999999999999999999999999999999987532 122346677766542 23457
Q ss_pred CcHHHHHHHHHHhcCCccccccCCCeEEec----CCeeEEEEc---C--eEEEeecHHHHhhcCCCCc------h-----
Q 002354 628 HPIGKAIVEAAEFSNCQNVKVADGTFIEEP----GSGTVAIIE---D--RKVSVGTIDWLRSHGVDTS------T----- 687 (932)
Q Consensus 628 hPi~~Ai~~~a~~~~~~~~~~~~~~~~~~~----g~g~~~~i~---~--~~~~~Gs~~~i~~~~~~~~------~----- 687 (932)
||++.|++++++..+..........+.+.| .+++...+. + ..+.||+++.+.+.|.... +
T Consensus 419 ~p~d~All~~a~~~~~~~~~~~~~~~~~~pFds~~k~msvvv~~~~~~~~~~~KGa~e~il~~c~~~~~~~~~~~l~~~~ 498 (902)
T PRK10517 419 NLLDTAVLEGVDEESARSLASRWQKIDEIPFDFERRRMSVVVAENTEHHQLICKGALEEILNVCSQVRHNGEIVPLDDIM 498 (902)
T ss_pred CHHHHHHHHHHHhcchhhhhhcCceEEEeeeCCCcceEEEEEEECCCeEEEEEeCchHHHHHhchhhhcCCCeecCCHHH
Confidence 999999999887543111111112223333 334444332 2 3488999999998875321 0
Q ss_pred hhh----HHHHHhCCCeEEEEEE----------------CCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHH
Q 002354 688 FQE----VEMEDLMNQSLVYVGV----------------DNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKN 747 (932)
Q Consensus 688 ~~~----~~~~~~~g~~~~~va~----------------~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~ 747 (932)
.++ .+....+|.+++++++ |++|+|+++|+|++||+++++|++|+++||+++|+|||++.
T Consensus 499 ~~~i~~~~~~~a~~G~rvlavA~k~~~~~~~~~~~~~e~~l~~lGli~~~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~ 578 (902)
T PRK10517 499 LRRIKRVTDTLNRQGLRVVAVATKYLPAREGDYQRADESDLILEGYIAFLDPPKETTAPALKALKASGVTVKILTGDSEL 578 (902)
T ss_pred HHHHHHHHHHHHhcCCEEEEEEEecCCccccccccccccCceeeehHhhhCcchhhHHHHHHHHHHCCCEEEEEcCCCHH
Confidence 001 1234567999999885 56899999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCC-----------------------ceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHHHHhCCe
Q 002354 748 SAEYVASLVGIPKD-----------------------KVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALASSHI 804 (932)
Q Consensus 748 ~a~~ia~~~gi~~~-----------------------~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~v 804 (932)
+|.++|+++||+.+ .+|+|++|+||.++|+.||++|++|+|+|||+||+|||++|||
T Consensus 579 tA~~IA~~lGI~~~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~K~~IV~~Lq~~G~vVam~GDGvNDaPALk~ADV 658 (902)
T PRK10517 579 VAAKVCHEVGLDAGEVLIGSDIETLSDDELANLAERTTLFARLTPMHKERIVTLLKREGHVVGFMGDGINDAPALRAADI 658 (902)
T ss_pred HHHHHHHHcCCCccCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHHHHHHHHHHHHCCCEEEEECCCcchHHHHHhCCE
Confidence 99999999999631 7999999999999999999999999999999999999999999
Q ss_pred eEEecCchHHHHhhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHh
Q 002354 805 GVAMGGGVGAASEVASVVLMGNRLSQLLVALELSRLTMKTVKQNLWWAFGYNIVGIPIAAGVLLPVTGTMLTPSIAGALM 884 (932)
Q Consensus 805 gIa~~~~~~~a~~~ad~vl~~~~~~~i~~~i~~gR~~~~~i~~nl~~a~~~N~i~i~la~~~~~~~~g~~l~P~~aa~~m 884 (932)
|||||+|+|.||++||+|+++||+..|++++++||++++||+|++.|.++.|+..+...+...+ +.+ ..|+.+..++
T Consensus 659 GIAmg~gtdvAkeaADiVLldd~~~~I~~ai~~gR~i~~nI~k~i~~~ls~n~~~v~~~~~~~~-~~~--~~pl~~~qiL 735 (902)
T PRK10517 659 GISVDGAVDIAREAADIILLEKSLMVLEEGVIEGRRTFANMLKYIKMTASSNFGNVFSVLVASA-FLP--FLPMLPLHLL 735 (902)
T ss_pred EEEeCCcCHHHHHhCCEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-Hhh--hhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999865443322111 011 2477777777
Q ss_pred hhhHHHHHHHhhhhccccccccccccCCCCC
Q 002354 885 GLSSIGVMANSLLLRLKFSSKQKASFQAPSS 915 (932)
Q Consensus 885 ~~ssl~v~lnsl~l~~~~~~~~~~~~k~~~~ 915 (932)
+..-+.. +.++.|. ..+..++.+++||+
T Consensus 736 ~inl~~D-~~~~al~--~d~~~~~~m~~p~r 763 (902)
T PRK10517 736 IQNLLYD-VSQVAIP--FDNVDDEQIQKPQR 763 (902)
T ss_pred HHHHHHH-HhHHhhc--CCCCChhhhcCCCC
Confidence 7766666 4455554 44555556788887
No 11
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=1.1e-86 Score=787.76 Aligned_cols=512 Identities=26% Similarity=0.362 Sum_probs=432.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccCCC-eEEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeeeEEEE
Q 002354 328 EPIMLIAFVLLGKNLEQRAKIKATSDMTGLLGILPS-KARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVR 406 (932)
Q Consensus 328 ~~~~il~~~llg~~le~~~~~ka~~~l~~L~~~~p~-~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll 406 (932)
..+.+++.++++.++|.++++|+++.+++|+++.|+ +++|+|++ +++++|++++|++||+|.|++||+||+||+|+
T Consensus 68 i~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~vir~g---~~~~~V~~~eL~~GDiV~v~~Gd~IPaDG~vi 144 (679)
T PRK01122 68 ITLWLWFTVLFANFAEALAEGRGKAQADSLRGAKKDTFARKLREP---GAAEEVPATELRKGDIVLVEAGEIIPADGEVI 144 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECC---CEEEEEEHHHcCCCCEEEEcCCCEEEEEEEEE
Confidence 345566668899999999999999999999999886 79999863 23889999999999999999999999999999
Q ss_pred eeeeEEeccccccCCCceeecCCCc---cccceeeecCcEEEEEEecCCcchHHHHHHHHHHhhcCCChHHHHHHHHHhh
Q 002354 407 AGRSTVDESSFTGEPLPVTKIPESE---VAAGSINLNGTLTVEVRRPGGETAMGDIVRLVEEAQSREAPVQRLADQVSGH 483 (932)
Q Consensus 407 ~G~~~VDES~LTGES~Pv~K~~g~~---V~aGt~v~~G~~~~~V~~tG~~T~~gki~~~v~~a~~~~~~lq~~~d~~~~~ 483 (932)
+|.+.||||+|||||.|+.|++|+. ||+||.|.+|.++++|+++|.+|.++||++++++++.+|+|+|...+.+..+
T Consensus 145 eG~a~VDESaLTGES~PV~K~~G~~~~~V~aGT~v~~G~~~i~Vta~g~~S~lgki~~lve~a~~~ktp~e~al~~l~~~ 224 (679)
T PRK01122 145 EGVASVDESAITGESAPVIRESGGDFSSVTGGTRVLSDWIVIRITANPGESFLDRMIALVEGAKRQKTPNEIALTILLAG 224 (679)
T ss_pred EccEEEEcccccCCCCceEeCCCCccCeEEeceEEEeeeEEEEEEEecccCHHHHHHHHHHhccccCCHHHHHHHHHHHh
Confidence 9999999999999999999999998 9999999999999999999999999999999999999999999888877666
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcccchhccCCcHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhhhcCccccCchH
Q 002354 484 FTYGVIALSAATFVFWNLFGAHVLPTAIQYGGPVSLALQLSCSVLVVACPCALGLATPTAMLVGTSLGATRGLLLRGGNI 563 (932)
Q Consensus 484 ~~~~vl~la~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ai~vLvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~ 563 (932)
++.+.+++++..+.++++.+ .+ .++..++++++++|||+|+..+|++...++.+++|+|+++|++++
T Consensus 225 l~~i~l~~~~~~~~~~~~~g-----------~~--~~l~~~iallV~aiP~alg~l~~~i~i~g~~r~ak~gvLvk~~~a 291 (679)
T PRK01122 225 LTIIFLLVVATLPPFAAYSG-----------GA--LSITVLVALLVCLIPTTIGGLLSAIGIAGMDRVLQANVIATSGRA 291 (679)
T ss_pred hhHHHHHHHHHHHHHHHHhC-----------ch--HHHHHHHHHHHHcccchhhhHHHHHHHHHHHHHhcCCeeecCchH
Confidence 65444433333222221111 12 267888999999999999999999999999999999999999999
Q ss_pred HHhcccccEEEecCCCCcccCceEEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHhcccCCCcHHHHHHHHHHh-cC
Q 002354 564 LEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLSETEILKFAAGVESNTVHPIGKAIVEAAEF-SN 642 (932)
Q Consensus 564 lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ll~laa~~e~~s~hPi~~Ai~~~a~~-~~ 642 (932)
+|.+|++|+||||||||||+|+|++.++++. ++.++++++.+++.++..+.||.++||+++++. .+
T Consensus 292 vE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~-------------~~~~~~~ll~~a~~~s~~s~hP~~~AIv~~a~~~~~ 358 (679)
T PRK01122 292 VEAAGDVDTLLLDKTGTITLGNRQASEFLPV-------------PGVTEEELADAAQLSSLADETPEGRSIVVLAKQRFN 358 (679)
T ss_pred HHHhcCCCEEEEeCCCCCcCCcEEEEEEEeC-------------CCCCHHHHHHHHHHhcCCCCCchHHHHHHHHHhhcC
Confidence 9999999999999999999999999998865 345677899999999999999999999999876 23
Q ss_pred Ccccccc--CCCe-EEecCCeeEEE-EcCeEEEeecHHHHhhcCCC----Cc-hh-hhHHHHHhCCCeEEEEEECCEEEE
Q 002354 643 CQNVKVA--DGTF-IEEPGSGTVAI-IEDRKVSVGTIDWLRSHGVD----TS-TF-QEVEMEDLMNQSLVYVGVDNMLAG 712 (932)
Q Consensus 643 ~~~~~~~--~~~~-~~~~g~g~~~~-i~~~~~~~Gs~~~i~~~~~~----~~-~~-~~~~~~~~~g~~~~~va~~~~~lG 712 (932)
....... ..++ .+...++.++. ++++.+.||+++.+.+.|.. .. .. +..+..+.+|.++++++.|++++|
T Consensus 359 ~~~~~~~~~~~~~~pF~s~~~~~gv~~~g~~~~kGa~e~il~~~~~~g~~~~~~~~~~~~~~a~~G~~~l~va~~~~~lG 438 (679)
T PRK01122 359 LRERDLQSLHATFVPFSAQTRMSGVDLDGREIRKGAVDAIRRYVESNGGHFPAELDAAVDEVARKGGTPLVVAEDNRVLG 438 (679)
T ss_pred CCchhhccccceeEeecCcCceEEEEECCEEEEECCHHHHHHHHHhcCCcChHHHHHHHHHHHhCCCcEEEEEECCeEEE
Confidence 3211100 1111 22223344443 67889999999988765521 11 11 112334567899999999999999
Q ss_pred EEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecccChhhHHHHHHHHhhCCCEEEEEcCC
Q 002354 713 LIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDG 792 (932)
Q Consensus 713 ~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg 792 (932)
++.++|++|||++++|++||++||+++|+|||++.+|.++|+++||+ +++++++||||.++|+.+|++|+.|+|+|||
T Consensus 439 ~i~l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId--~v~A~~~PedK~~iV~~lQ~~G~~VaMtGDG 516 (679)
T PRK01122 439 VIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVD--DFLAEATPEDKLALIRQEQAEGRLVAMTGDG 516 (679)
T ss_pred EEEEeccCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCc--EEEccCCHHHHHHHHHHHHHcCCeEEEECCC
Confidence 99999999999999999999999999999999999999999999997 7999999999999999999999999999999
Q ss_pred cccHHHHHhCCeeEEecCchHHHHhhcCEEEeCCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-----HHHHHHhhh
Q 002354 793 INDAAALASSHIGVAMGGGVGAASEVASVVLMGNRLSQLLVALELSRLTMKTVKQN-LWWAFGYNI-----VGIPIAAGV 866 (932)
Q Consensus 793 ~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl~~~~~~~i~~~i~~gR~~~~~i~~n-l~~a~~~N~-----i~i~la~~~ 866 (932)
+||+|||++||||||||+|+|.||++||+|+++||+..|.+++++||+++-+ |.. -.|++. |- ..+|..+..
T Consensus 517 vNDAPALa~ADVGIAMgsGTdvAkeAADiVLldd~~s~Iv~av~~GR~~~~t-r~~~~~f~~~-n~~~~~~~i~p~~~~~ 594 (679)
T PRK01122 517 TNDAPALAQADVGVAMNSGTQAAKEAGNMVDLDSNPTKLIEVVEIGKQLLMT-RGALTTFSIA-NDVAKYFAIIPAMFAA 594 (679)
T ss_pred cchHHHHHhCCEeEEeCCCCHHHHHhCCEEEeCCCHHHHHHHHHHHHHHHhh-hHhhhhhhHH-HHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999944 444 455554 53 456666666
Q ss_pred hhcccc
Q 002354 867 LLPVTG 872 (932)
Q Consensus 867 ~~~~~g 872 (932)
.||-.+
T Consensus 595 ~~~~~~ 600 (679)
T PRK01122 595 TYPQLN 600 (679)
T ss_pred hCcccc
Confidence 677654
No 12
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=100.00 E-value=5.7e-87 Score=824.86 Aligned_cols=557 Identities=21% Similarity=0.274 Sum_probs=461.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccCCCeEEEEEecC--CCCcEEEEeCCCccCCCEEEEcCCCEEeeeEE
Q 002354 327 EEPIMLIAFVLLGKNLEQRAKIKATSDMTGLLGILPSKARLLVDND--AKDSIIEVPCNSLHVGDHIVVLPGDRIPADGV 404 (932)
Q Consensus 327 ~~~~~il~~~llg~~le~~~~~ka~~~l~~L~~~~p~~~~vir~~~--~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgv 404 (932)
..+++++++++++.+++.++++|+++++++|.++.+.+++|+|+-. .+|++++|+++||+|||+|.|++||+|||||+
T Consensus 89 ~~~~iI~~iv~~~~~i~~~~e~~a~ka~~~L~~l~~~~~~V~R~~~~~~dg~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~ 168 (867)
T TIGR01524 89 EATVIIALMVLASGLLGFIQESRAERAAYALKNMVKNTATVLRVINENGNGSMDEVPIDALVPGDLIELAAGDIIPADAR 168 (867)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCeeEEEEecccCCCCeEEEEEhhcCCCCCEEEECCCCEEcccEE
Confidence 3556677788888889999999999999999999999999998210 02689999999999999999999999999999
Q ss_pred EEeee-eEEeccccccCCCceeecCCC-------------ccccceeeecCcEEEEEEecCCcchHHHHHHHHHHhhcCC
Q 002354 405 VRAGR-STVDESSFTGEPLPVTKIPES-------------EVAAGSINLNGTLTVEVRRPGGETAMGDIVRLVEEAQSRE 470 (932)
Q Consensus 405 ll~G~-~~VDES~LTGES~Pv~K~~g~-------------~V~aGt~v~~G~~~~~V~~tG~~T~~gki~~~v~~a~~~~ 470 (932)
|++|+ +.||||+|||||.|+.|.+++ .+|+||.+.+|.++++|++||.+|.+|||.+++++ ...+
T Consensus 169 li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~v~~G~~~~~V~~tG~~T~~gki~~~v~~-~~~~ 247 (867)
T TIGR01524 169 VISARDLFINQSALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHAQAVVLATGSSTWFGSLAIAATE-RRGQ 247 (867)
T ss_pred EEecCceEEEcccccCCCCcccccCCccccccccccccccceecCCeEEEeEEEEEEEEEcCccHHHHHHHHhhC-CCCC
Confidence 99997 699999999999999999875 59999999999999999999999999999999988 7778
Q ss_pred ChHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcccchhccCCcHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHH
Q 002354 471 APVQRLADQVSGHFTYGVIALSAATFVFWNLFGAHVLPTAIQYGGPVSLALQLSCSVLVVACPCALGLATPTAMLVGTSL 550 (932)
Q Consensus 471 ~~lq~~~d~~~~~~~~~vl~la~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ai~vLvva~P~aL~la~p~a~~~~~~~ 550 (932)
+|+|+.++++++++.+++++++.+++++|.+.. .+|..++.+++++++++|||+|++++|+++..+..+
T Consensus 248 t~lq~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-----------~~~~~~~~~al~l~v~~iP~~Lp~~vt~~la~g~~~ 316 (867)
T TIGR01524 248 TAFDKGVKSVSKLLIRFMLVMVPVVLMINGLMK-----------GDWLEAFLFALAVAVGLTPEMLPMIVSSNLAKGAIN 316 (867)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHheehHHHhc-----------CCHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHH
Confidence 999999999999999998888888877765432 246778999999999999999999999999999999
Q ss_pred hhhcCccccCchHHHhcccccEEEecCCCCcccCceEEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHH---hcccCC
Q 002354 551 GATRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLSETEILKFAAG---VESNTV 627 (932)
Q Consensus 551 ~a~~gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ll~laa~---~e~~s~ 627 (932)
++|+|+++|+++++|++|++|+||||||||||+|+|+|.+++.. .+.+.++++.+++. .+..+.
T Consensus 317 mak~~ilvk~l~aiE~lg~v~vic~DKTGTLT~~~m~v~~~~~~-------------~~~~~~~~l~~a~l~~~~~~~~~ 383 (867)
T TIGR01524 317 MSKKKVIVKELSAIQNFGAMDILCTDKTGTLTQDKIELEKHIDS-------------SGETSERVLKMAWLNSYFQTGWK 383 (867)
T ss_pred HHhCCcEEccchhhhhccCccEEEecCCCccccCeEEEEEEecC-------------CCCCHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999999999999999999998643 22335667776653 233457
Q ss_pred CcHHHHHHHHHHhcCCccccccCCCeEEec----CCeeEEEEcC-----eEEEeecHHHHhhcCCCCc------h-----
Q 002354 628 HPIGKAIVEAAEFSNCQNVKVADGTFIEEP----GSGTVAIIED-----RKVSVGTIDWLRSHGVDTS------T----- 687 (932)
Q Consensus 628 hPi~~Ai~~~a~~~~~~~~~~~~~~~~~~~----g~g~~~~i~~-----~~~~~Gs~~~i~~~~~~~~------~----- 687 (932)
||+++|+++++..............+.+.| ++++...+++ ..+.||+++.+.+.|.... .
T Consensus 384 ~p~~~Al~~~~~~~~~~~~~~~~~~~~~~pF~s~~k~ms~~v~~~~~~~~~~~KGa~e~il~~c~~~~~~~~~~~l~~~~ 463 (867)
T TIGR01524 384 NVLDHAVLAKLDESAARQTASRWKKVDEIPFDFDRRRLSVVVENRAEVTRLICKGAVEEMLTVCTHKRFGGAVVTLSESE 463 (867)
T ss_pred ChHHHHHHHHHHhhchhhHhhcCceEEEeccCCCcCEEEEEEEcCCceEEEEEeCcHHHHHHhchhhhcCCceecCCHHH
Confidence 999999999887532211111112233344 4555555543 3489999999988775320 0
Q ss_pred hh----hHHHHHhCCCeEEEEEE----------------CCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHH
Q 002354 688 FQ----EVEMEDLMNQSLVYVGV----------------DNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKN 747 (932)
Q Consensus 688 ~~----~~~~~~~~g~~~~~va~----------------~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~ 747 (932)
.+ ..+.++.+|.+++++++ |++++|+++|+|++|++++++|++|+++||+++|+|||+..
T Consensus 464 ~~~i~~~~~~~a~~G~rvlavA~~~~~~~~~~~~~~~e~~l~~lGli~l~Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~ 543 (867)
T TIGR01524 464 KSELQDMTAEMNRQGIRVIAVATKTLKVGEADFTKTDEEQLIIEGFLGFLDPPKESTKEAIAALFKNGINVKVLTGDNEI 543 (867)
T ss_pred HHHHHHHHHHHHhcCCEEEEEEEeccCcccccccccccCCcEEEEEEEeeCCCchhHHHHHHHHHHCCCEEEEEcCCCHH
Confidence 01 11224567899999886 23799999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCC-----------------------ceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHHHHhCCe
Q 002354 748 SAEYVASLVGIPKD-----------------------KVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALASSHI 804 (932)
Q Consensus 748 ~a~~ia~~~gi~~~-----------------------~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~v 804 (932)
+|.++|+++||..+ .+|+|++|+||.++|+.||++|+.|+|+|||+||+|||++|||
T Consensus 544 tA~aIA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~K~~iV~~lq~~G~vVam~GDGvNDapALk~AdV 623 (867)
T TIGR01524 544 VTARICQEVGIDANDFLLGADIEELSDEELARELRKYHIFARLTPMQKSRIIGLLKKAGHTVGFLGDGINDAPALRKADV 623 (867)
T ss_pred HHHHHHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHHHHHHHHHHHhCCCEEEEECCCcccHHHHHhCCE
Confidence 99999999999621 7999999999999999999999999999999999999999999
Q ss_pred eEEecCchHHHHhhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhccccccccHHHHHHH
Q 002354 805 GVAMGGGVGAASEVASVVLMGNRLSQLLVALELSRLTMKTVKQNLWWAFGYNIVGIPIAA-GVLLPVTGTMLTPSIAGAL 883 (932)
Q Consensus 805 gIa~~~~~~~a~~~ad~vl~~~~~~~i~~~i~~gR~~~~~i~~nl~~a~~~N~i~i~la~-~~~~~~~g~~l~P~~aa~~ 883 (932)
|||||+|+|.||++||+|+++|++..|++++++||++++|||||+.|.++.|+..+...+ +.++ . ...|+.+..+
T Consensus 624 GIAmg~gtdvAk~aADiVLldd~~~~I~~ai~~gR~i~~ni~k~i~~~ls~n~~~~~~~~~~~~~--~--~~~pl~~~qi 699 (867)
T TIGR01524 624 GISVDTAADIAKEASDIILLEKSLMVLEEGVIEGRNTFGNILKYLKMTASSNFGNVFSVLVASAF--I--PFLPMLSLHL 699 (867)
T ss_pred EEEeCCccHHHHHhCCEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--h--hhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999988875443322 1111 1 1247777777
Q ss_pred hhhhHHHHHHHhhhhccccccccccccCCCCC
Q 002354 884 MGLSSIGVMANSLLLRLKFSSKQKASFQAPSS 915 (932)
Q Consensus 884 m~~ssl~v~lnsl~l~~~~~~~~~~~~k~~~~ 915 (932)
..+.-+.. +.++.|. ..+...+.+++||+
T Consensus 700 l~inl~~d-~~~~al~--~~~~~~~~m~~p~~ 728 (867)
T TIGR01524 700 LIQNLLYD-FSQLTLP--WDKMDREFLKKPHQ 728 (867)
T ss_pred HHHHHHHH-HHHHhhc--CCCCChHhhCCCCC
Confidence 77766666 5566664 44555555676666
No 13
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=100.00 E-value=1e-86 Score=823.28 Aligned_cols=568 Identities=21% Similarity=0.267 Sum_probs=464.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccCCCeEEEEEecC--CCCcEEEEeCCCccCCCEEEEcCCCEEeeeE
Q 002354 326 FEEPIMLIAFVLLGKNLEQRAKIKATSDMTGLLGILPSKARLLVDND--AKDSIIEVPCNSLHVGDHIVVLPGDRIPADG 403 (932)
Q Consensus 326 f~~~~~il~~~llg~~le~~~~~ka~~~l~~L~~~~p~~~~vir~~~--~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDg 403 (932)
|..+++++++++++.+++.++++|+++++++|+++.|.+++|+|++. .+|++++|++++|+|||+|.|++||+|||||
T Consensus 111 ~~~~~iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~~~~~V~Rdg~~~~~g~~~~I~~~eLv~GDiV~l~~Gd~IPaDg 190 (903)
T PRK15122 111 LTGVIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVRTTATVLRRGHAGAEPVRREIPMRELVPGDIVHLSAGDMIPADV 190 (903)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEEEECCccCCCCeEEEEEHHHCCCCCEEEECCCCEEeeeE
Confidence 34566777888899999999999999999999999999999998731 1257899999999999999999999999999
Q ss_pred EEEeee-eEEeccccccCCCceeecC-----------------------CCccccceeeecCcEEEEEEecCCcchHHHH
Q 002354 404 VVRAGR-STVDESSFTGEPLPVTKIP-----------------------ESEVAAGSINLNGTLTVEVRRPGGETAMGDI 459 (932)
Q Consensus 404 vll~G~-~~VDES~LTGES~Pv~K~~-----------------------g~~V~aGt~v~~G~~~~~V~~tG~~T~~gki 459 (932)
+|++|+ +.||||+|||||.|+.|.+ ++.||+||.+.+|.++++|++||.+|.+|||
T Consensus 191 ~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG~~T~~gkI 270 (903)
T PRK15122 191 RLIESRDLFISQAVLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATGSRTYFGSL 270 (903)
T ss_pred EEEEcCceEEEccccCCCCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeEEEEEEEeccccHhhHH
Confidence 999997 5899999999999999975 2679999999999999999999999999999
Q ss_pred HHHHHHhhcCCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcccchhccCCcHHHHHHHHHHHHHHHhhhcchhh
Q 002354 460 VRLVEEAQSREAPVQRLADQVSGHFTYGVIALSAATFVFWNLFGAHVLPTAIQYGGPVSLALQLSCSVLVVACPCALGLA 539 (932)
Q Consensus 460 ~~~v~~a~~~~~~lq~~~d~~~~~~~~~vl~la~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ai~vLvva~P~aL~la 539 (932)
.+++++ ...++|+|+.++++++++..+.+.++.+++++..+. +.+|..++.+++++++++|||+|+++
T Consensus 271 ~~~v~~-~~~~t~l~~~l~~i~~~l~~~~~~~~~~v~~~~~~~-----------~~~~~~~l~~aisl~V~~~Pe~Lp~~ 338 (903)
T PRK15122 271 AKSIVG-TRAQTAFDRGVNSVSWLLIRFMLVMVPVVLLINGFT-----------KGDWLEALLFALAVAVGLTPEMLPMI 338 (903)
T ss_pred HHHhcC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-----------cCCHHHHHHHHHHHHHHHccchHHHH
Confidence 999987 566789999999999887776666555554443221 23567889999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCccccCchHHHhcccccEEEecCCCCcccCceEEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHH
Q 002354 540 TPTAMLVGTSLGATRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLSETEILKFA 619 (932)
Q Consensus 540 ~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ll~la 619 (932)
+|++++.+..+++|+|+++|+++++|+||++|+||||||||||+|+|+|.+++.. ++.++++++.++
T Consensus 339 vt~~La~g~~~mak~~ilVk~l~avE~Lg~v~vIc~DKTGTLT~~~m~V~~~~~~-------------~~~~~~~~l~~a 405 (903)
T PRK15122 339 VSSNLAKGAIAMARRKVVVKRLNAIQNFGAMDVLCTDKTGTLTQDRIILEHHLDV-------------SGRKDERVLQLA 405 (903)
T ss_pred HHHHHHHHHHHHHHcCCeecccchhhhhcCCcEEEecCCcccccCeEEEEEEEcC-------------CCCChHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998754 122345667666
Q ss_pred HHh---cccCCCcHHHHHHHHHHhcCCccccccCCCeEEecCCeeE---EEE----cCe--EEEeecHHHHhhcCCCCc-
Q 002354 620 AGV---ESNTVHPIGKAIVEAAEFSNCQNVKVADGTFIEEPGSGTV---AII----EDR--KVSVGTIDWLRSHGVDTS- 686 (932)
Q Consensus 620 a~~---e~~s~hPi~~Ai~~~a~~~~~~~~~~~~~~~~~~~g~g~~---~~i----~~~--~~~~Gs~~~i~~~~~~~~- 686 (932)
+.. +..+.||+++|+++++...+..........+.+.|+.+.. ..+ +++ .+.||+++.+.+.|....
T Consensus 406 ~l~s~~~~~~~~p~e~All~~a~~~~~~~~~~~~~~~~~~pF~s~~k~ms~v~~~~~~~~~~~~KGa~e~il~~c~~~~~ 485 (903)
T PRK15122 406 WLNSFHQSGMKNLMDQAVVAFAEGNPEIVKPAGYRKVDELPFDFVRRRLSVVVEDAQGQHLLICKGAVEEMLAVATHVRD 485 (903)
T ss_pred HHhCCCCCCCCChHHHHHHHHHHHcCchhhhhcCceEEEeeeCCCcCEEEEEEEcCCCcEEEEECCcHHHHHHhchhhhc
Confidence 532 3446799999999999876543111122344555554432 221 333 377899999988875321
Q ss_pred -----hh---------hhHHHHHhCCCeEEEEEE------------------CCEEEEEEEecccccHHHHHHHHHHHhC
Q 002354 687 -----TF---------QEVEMEDLMNQSLVYVGV------------------DNMLAGLIYVEDRIRDDAAHVVNSLSSQ 734 (932)
Q Consensus 687 -----~~---------~~~~~~~~~g~~~~~va~------------------~~~~lG~i~l~D~lr~~~~~~i~~L~~~ 734 (932)
+. +..+.++.+|.+++++++ |++|+|+++|+|++||+++++|++||++
T Consensus 486 ~~~~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~k~~~~~~~~~~~~~~~e~~l~~lGli~l~Dp~R~~a~~aI~~l~~a 565 (903)
T PRK15122 486 GDTVRPLDEARRERLLALAEAYNADGFRVLLVATREIPGGESRAQYSTADERDLVIRGFLTFLDPPKESAAPAIAALREN 565 (903)
T ss_pred CCCeecCCHHHHHHHHHHHHHHHhCCCEEEEEEEeccCccccccccccccccCcEEEEEEeccCccHHHHHHHHHHHHHC
Confidence 00 012234567899999884 3589999999999999999999999999
Q ss_pred CCeEEEEcCCCHHHHHHHHHHcCCCCC-----------------------ceecccChhhHHHHHHHHhhCCCEEEEEcC
Q 002354 735 GIGVYMLSGDKKNSAEYVASLVGIPKD-----------------------KVLSGVKPNEKKRFINELQNDENVVAMVGD 791 (932)
Q Consensus 735 Gi~v~~~TGd~~~~a~~ia~~~gi~~~-----------------------~v~~~~~p~~K~~~v~~l~~~g~~v~~vGD 791 (932)
||+++|+|||++.+|.++|+++||..+ .+|+|++|+||.++|+.||++|+.|+|+||
T Consensus 566 GI~v~miTGD~~~tA~aIA~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K~~iV~~Lq~~G~vVamtGD 645 (903)
T PRK15122 566 GVAVKVLTGDNPIVTAKICREVGLEPGEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQKSRVLKALQANGHTVGFLGD 645 (903)
T ss_pred CCeEEEECCCCHHHHHHHHHHcCCCCCCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHHHHHHHHHHhCCCEEEEECC
Confidence 999999999999999999999999621 699999999999999999999999999999
Q ss_pred CcccHHHHHhCCeeEEecCchHHHHhhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhcc
Q 002354 792 GINDAAALASSHIGVAMGGGVGAASEVASVVLMGNRLSQLLVALELSRLTMKTVKQNLWWAFGYNIVGIPIAA-GVLLPV 870 (932)
Q Consensus 792 g~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl~~~~~~~i~~~i~~gR~~~~~i~~nl~~a~~~N~i~i~la~-~~~~~~ 870 (932)
|+||+|||++||||||||+|+|.||++||+|+++||+..|++++++||++++||++++.|.++.|+..+...+ +.++
T Consensus 646 GvNDaPALk~ADVGIAmg~gtdvAkeaADiVLldd~f~~Iv~ai~~gR~i~~nI~k~i~~~ls~n~~~~~~~~~~~~~-- 723 (903)
T PRK15122 646 GINDAPALRDADVGISVDSGADIAKESADIILLEKSLMVLEEGVIKGRETFGNIIKYLNMTASSNFGNVFSVLVASAF-- 723 (903)
T ss_pred CchhHHHHHhCCEEEEeCcccHHHHHhcCEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--
Confidence 9999999999999999999999999999999999999999999999999999999999999999875543322 1111
Q ss_pred ccccccHHHHHHHhhhhHHHHHHHhhhhccccccccccccCCCCCCCCCCcccccc
Q 002354 871 TGTMLTPSIAGALMGLSSIGVMANSLLLRLKFSSKQKASFQAPSSRVNSNVDSHQL 926 (932)
Q Consensus 871 ~g~~l~P~~aa~~m~~ssl~v~lnsl~l~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 926 (932)
+ ...|+.+..+.+..-+.-. .++.|. ..++..+.+ +||++.+....++.+
T Consensus 724 -~-~~~pl~~~qil~~nli~D~-~~lal~--~d~~~~~~m-~~P~~~~~~~~~~~~ 773 (903)
T PRK15122 724 -I-PFLPMLAIHLLLQNLMYDI-SQLSLP--WDKMDKEFL-RKPRKWDAKNIGRFM 773 (903)
T ss_pred -h-ccchhHHHHHHHHHHHHHH-HHHhhc--CCCCCHhhc-CCCCCCChhhhHHHH
Confidence 1 1347766666666656663 565554 444555557 788887777776644
No 14
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=100.00 E-value=3.8e-85 Score=818.06 Aligned_cols=586 Identities=20% Similarity=0.216 Sum_probs=462.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcc-CCCeEEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeeeEEEEe
Q 002354 329 PIMLIAFVLLGKNLEQRAKIKATSDMTGLLGI-LPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRA 407 (932)
Q Consensus 329 ~~~il~~~llg~~le~~~~~ka~~~l~~L~~~-~p~~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll~ 407 (932)
++++++.+++.-.+..++.+++++.+++|.+. .+.+++|+|+ |++++|++++|+|||+|.|++||+|||||+|++
T Consensus 131 ~~~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~~ViRd----G~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~li~ 206 (941)
T TIGR01517 131 GVAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAVIRG----GQEQQISIHDIVVGDIVSLSTGDVVPADGVFIS 206 (941)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCceEEEEC----CEEEEEeHHHCCCCCEEEECCCCEecccEEEEE
Confidence 33333333444444455555566666666653 4779999987 589999999999999999999999999999999
Q ss_pred e-eeEEeccccccCCCceeecCCCc--cccceeeecCcEEEEEEecCCcchHHHHHHHHHHhhcCCChHHHHHHHHHhhH
Q 002354 408 G-RSTVDESSFTGEPLPVTKIPESE--VAAGSINLNGTLTVEVRRPGGETAMGDIVRLVEEAQSREAPVQRLADQVSGHF 484 (932)
Q Consensus 408 G-~~~VDES~LTGES~Pv~K~~g~~--V~aGt~v~~G~~~~~V~~tG~~T~~gki~~~v~~a~~~~~~lq~~~d~~~~~~ 484 (932)
| ++.||||+|||||.|+.|.+++. ||+||.+.+|.++++|++||.+|.+|||.+++++++ +++|+|+.++++++++
T Consensus 207 g~~l~VdES~LTGES~pv~K~~~~~n~v~~GT~v~~G~~~~iV~~tG~~T~~gki~~~~~~~~-~~t~l~~~~~~~~~~~ 285 (941)
T TIGR01517 207 GLSLEIDESSITGESDPIKKGAPKDSFLLSGTVVNEGSGRMLVTAVGVNSFGGKLMMELRAEG-EDTPLQEKLSELAGLI 285 (941)
T ss_pred cCcEEEEecccCCCCCcccccCCCCceEEeCCeEEeeEEEEEEEEeCCCcHHHHHHHhhccCC-CCCcHHHHHHHHHHHH
Confidence 9 89999999999999999999887 999999999999999999999999999999998865 5679999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcc-C-cccc---hhccCCcHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhhhcCcccc
Q 002354 485 TYGVIALSAATFVFWNLFGA-H-VLPT---AIQYGGPVSLALQLSCSVLVVACPCALGLATPTAMLVGTSLGATRGLLLR 559 (932)
Q Consensus 485 ~~~vl~la~~~~i~~~~~~~-~-~~~~---~~~~~~~~~~~l~~ai~vLvva~P~aL~la~p~a~~~~~~~~a~~gilvk 559 (932)
.++++++++++|++|++... . .... ....+.++...+.+++++++++|||+|++++|+++..+..+++++|+++|
T Consensus 286 ~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~llv~~iP~~Lp~~vti~l~~~~~~mak~~ilvk 365 (941)
T TIGR01517 286 GKFGMGSAVLLFLVLSLRYVFRIIRGDGRDTEEDAQTFLDHFIIAVTIVVVAVPEGLPLAVTIALAYSMKKMMKDNNLVR 365 (941)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhCCCEEe
Confidence 99999888888877643210 0 0000 00012356778899999999999999999999999999999999999999
Q ss_pred CchHHHhcccccEEEecCCCCcccCceEEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHhcc-------------cC
Q 002354 560 GGNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLSETEILKFAAGVES-------------NT 626 (932)
Q Consensus 560 ~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ll~laa~~e~-------------~s 626 (932)
+++++|+||++|+||||||||||+|+|+|.+++..+..++........+. ...+++..+..+.+ ..
T Consensus 366 ~l~a~E~lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~s~~~~~~~~~~~~~~~ 444 (941)
T TIGR01517 366 HLAACETMGSATAICSDKTGTLTQNVMSVVQGYIGEQRFNVRDVLRNVPK-HVRNILVEGISLNSSSEEVVDRGGKRAFI 444 (941)
T ss_pred chHHhhhccCceEEEEcCcCceeeceEEEEEEEEecceEecCcccccCCH-HHHHHHHHHHHhCCCCccccCCCCccccC
Confidence 99999999999999999999999999999999875432221110000000 11223322222211 12
Q ss_pred CCcHHHHHHHHHHhcCCcccc-------ccCCCeEE-ecCCeeEEEEcC---eEEEeecHHHHhhcCCCCc---------
Q 002354 627 VHPIGKAIVEAAEFSNCQNVK-------VADGTFIE-EPGSGTVAIIED---RKVSVGTIDWLRSHGVDTS--------- 686 (932)
Q Consensus 627 ~hPi~~Ai~~~a~~~~~~~~~-------~~~~~~~~-~~g~g~~~~i~~---~~~~~Gs~~~i~~~~~~~~--------- 686 (932)
.+|++.|+++++...+.+... ....+|.. ..++++....++ ..++||+++.+...|....
T Consensus 445 g~p~e~All~~~~~~~~~~~~~~~~~~~~~~~pF~s~~k~msvv~~~~~~~~~~~~KGA~e~il~~c~~~~~~~g~~~~~ 524 (941)
T TIGR01517 445 GSKTECALLGFLLLLGRDYQEVRAEEKVVKIYPFNSERKFMSVVVKHSGGKVREFRKGASEIVLKPCRKRLDSNGEATPI 524 (941)
T ss_pred CCccHHHHHHHHHHcCCCHHHHHhhchhccccccCCCCCeEEEEEEeCCCcEEEEEECChHHHHHhhhHHhhcCCCcccC
Confidence 578899999998865543211 11112222 123344444433 2488999999988774310
Q ss_pred -h-----hhhHHHHHhCCCeEEEEEE----------------CCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCC
Q 002354 687 -T-----FQEVEMEDLMNQSLVYVGV----------------DNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGD 744 (932)
Q Consensus 687 -~-----~~~~~~~~~~g~~~~~va~----------------~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd 744 (932)
. .+..+.++.+|.+++++++ |++|+|+++++|++|++++++|++||++|++++|+|||
T Consensus 525 ~~~~~~i~~~~~~~a~~G~Rvl~~A~~~~~~~~~~~~~~~e~~l~~lGli~~~Dplr~~~~~aI~~l~~aGI~v~miTGD 604 (941)
T TIGR01517 525 SDDKDRCADVIEPLASDALRTICLAYRDFAPEEFPRKDYPNGGLTLIGVVGIKDPLRPGVREAVQECQRAGITVRMVTGD 604 (941)
T ss_pred cHHHHHHHHHHHHHHhcCCEEEEEEEEecCccccccccccccCcEEEEEeeccCCCchhHHHHHHHHHHCCCEEEEECCC
Confidence 0 0112335677889998875 34899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHcCCCCC-------------------------ceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHHH
Q 002354 745 KKNSAEYVASLVGIPKD-------------------------KVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAAL 799 (932)
Q Consensus 745 ~~~~a~~ia~~~gi~~~-------------------------~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al 799 (932)
+..||.++|+++||.++ .+|+|++|+||.++|+.||++|+.|+|+|||+||+|||
T Consensus 605 ~~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K~~iV~~lq~~g~vVam~GDGvNDapAL 684 (941)
T TIGR01517 605 NIDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDKQLLVLMLKDMGEVVAVTGDGTNDAPAL 684 (941)
T ss_pred ChHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHHHHHHHHHHHCCCEEEEECCCCchHHHH
Confidence 99999999999999631 69999999999999999999999999999999999999
Q ss_pred HhCCeeEEec-CchHHHHhhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHH
Q 002354 800 ASSHIGVAMG-GGVGAASEVASVVLMGNRLSQLLVALELSRLTMKTVKQNLWWAFGYNIVGIPIAAGVLLPVTGTMLTPS 878 (932)
Q Consensus 800 ~~A~vgIa~~-~~~~~a~~~ad~vl~~~~~~~i~~~i~~gR~~~~~i~~nl~~a~~~N~i~i~la~~~~~~~~g~~l~P~ 878 (932)
++|||||||| +|+|.|+++||+++++|++..|++++++||++++||+||+.|+++||+..+++++.+.+ ++ ...|+
T Consensus 685 k~AdVGIAmg~~gtdvAk~aADivL~dd~f~~I~~~i~~gR~~~~ni~k~i~~~l~~n~~~i~~~~~~~~--~~-~~~pl 761 (941)
T TIGR01517 685 KLADVGFSMGISGTEVAKEASDIILLDDNFASIVRAVKWGRNVYDNIRKFLQFQLTVNVVAVILTFVGSC--IS-STSPL 761 (941)
T ss_pred HhCCcceecCCCccHHHHHhCCEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hh-ccccH
Confidence 9999999999 99999999999999999999999999999999999999999999999998888764332 22 23577
Q ss_pred HHHHHhhhhHHHHHHHhhhhccccccccccccCCCCCCCCCCccccc
Q 002354 879 IAGALMGLSSIGVMANSLLLRLKFSSKQKASFQAPSSRVNSNVDSHQ 925 (932)
Q Consensus 879 ~aa~~m~~ssl~v~lnsl~l~~~~~~~~~~~~k~~~~~~~~~~~~~~ 925 (932)
-+..+..++-+...+.++.|.. .++..+++++||.+.+.+..+..
T Consensus 762 ~~~qil~inl~~d~~~al~l~~--e~~~~~lm~~~P~~~~~~li~~~ 806 (941)
T TIGR01517 762 TAVQLLWVNLIMDTLAALALAT--EPPTEALLDRKPIGRNAPLISRS 806 (941)
T ss_pred HHHHHHHHHHHHHHhhHHHHcc--CCccHHHHhCCCCCCCCCcCCHH
Confidence 7777888888888888888864 44455568888887776665543
No 15
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=100.00 E-value=3.2e-84 Score=805.13 Aligned_cols=571 Identities=22% Similarity=0.310 Sum_probs=463.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhccCCCeEEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeeeEEEEeee-eEEec
Q 002354 336 VLLGKNLEQRAKIKATSDMTGLLGILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAGR-STVDE 414 (932)
Q Consensus 336 ~llg~~le~~~~~ka~~~l~~L~~~~p~~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll~G~-~~VDE 414 (932)
+++.-.+..++.+|+++.+++|.++.|.+++|+|+ |++++|+++||+|||+|.|++||+|||||+|++|+ +.|||
T Consensus 90 i~~~~~i~~~qe~~a~~~l~~L~~l~~~~~~ViRd----g~~~~I~~~eLv~GDiv~l~~Gd~IPaDg~ii~g~~l~VDE 165 (884)
T TIGR01522 90 ILIVVTVGFVQEYRSEKSLEALNKLVPPECHLIRE----GKLEHVLASTLVPGDLVCLSVGDRVPADLRIVEAVDLSIDE 165 (884)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEC----CEEEEEEHHHCccCCEEEecCCCEEeeeEEEEEcCceEEEc
Confidence 33334445555557778888999999999999987 58999999999999999999999999999999995 89999
Q ss_pred cccccCCCceeecCCC--------------ccccceeeecCcEEEEEEecCCcchHHHHHHHHHHhhcCCChHHHHHHHH
Q 002354 415 SSFTGEPLPVTKIPES--------------EVAAGSINLNGTLTVEVRRPGGETAMGDIVRLVEEAQSREAPVQRLADQV 480 (932)
Q Consensus 415 S~LTGES~Pv~K~~g~--------------~V~aGt~v~~G~~~~~V~~tG~~T~~gki~~~v~~a~~~~~~lq~~~d~~ 480 (932)
|+|||||.|+.|.+++ .+|+||.+.+|.++++|++||.+|.+|+|.+++++++..++|+|+.++++
T Consensus 166 S~LTGES~pv~K~~~~~~~~~~~~~~~~~n~v~~GT~v~~G~~~~~V~~tG~~T~~gki~~~v~~~~~~kt~lq~~l~~l 245 (884)
T TIGR01522 166 SNLTGETTPVSKVTAPIPAATNGDLAERSNIAFMGTLVRCGHGKGIVVGTGSNTEFGAVFKMMQAIEKPKTPLQKSMDLL 245 (884)
T ss_pred ccccCCCcceecccccccccccccccccCceEEeCCEEEeeeEEEEEEEecCccHHHHHHHHhccCCCCCCcHHHHHHHH
Confidence 9999999999999874 79999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhccCcccchhccCCcHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhhhcCccccC
Q 002354 481 SGHFTYGVIALSAATFVFWNLFGAHVLPTAIQYGGPVSLALQLSCSVLVVACPCALGLATPTAMLVGTSLGATRGLLLRG 560 (932)
Q Consensus 481 ~~~~~~~vl~la~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ai~vLvva~P~aL~la~p~a~~~~~~~~a~~gilvk~ 560 (932)
+.++.++++++++++++++++. +.+|..++..++++++++|||+|++++|+++..+..+++++|+++|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~v~llv~aiP~~Lp~~vt~~l~~~~~r~ak~~ilvk~ 314 (884)
T TIGR01522 246 GKQLSLVSFGVIGVICLVGWFQ-----------GKDWLEMFTISVSLAVAAIPEGLPIIVTVTLALGVLRMSKKRAIVRK 314 (884)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhhcCCcccc
Confidence 9999887766665555554332 23567889999999999999999999999999999999999999999
Q ss_pred chHHHhcccccEEEecCCCCcccCceEEEEEEecCCCCCC--------CCCC----CCCCC-CC--HHHHHHHHHHhccc
Q 002354 561 GNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDP--------NSKQ----NPIHP-LS--ETEILKFAAGVESN 625 (932)
Q Consensus 561 ~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~~--------~~~~----~~~~~-~~--~~~ll~laa~~e~~ 625 (932)
++++|+||++|+||||||||||+|+|+|.+++..+..+.. .... ...+. .+ ..+++..++.+...
T Consensus 315 ~~a~E~Lg~v~~Ic~DKTGTLT~n~m~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 394 (884)
T TIGR01522 315 LPSVETLGSVNVICSDKTGTLTKNHMTVTKIWTSDGLHTMLNAVSLNQFGEVIVDGDVLHGFYTVAVSRILEAGNLCNNA 394 (884)
T ss_pred hHHHHhccCccEEEecCccccccCeEEEEEEEecCceEeeccCCccCCCCcccccccccccccCHHHHHHHHHHhhhCCC
Confidence 9999999999999999999999999999999875432110 0000 00000 11 13445444332211
Q ss_pred ---------CCCcHHHHHHHHHHhcCCccccccCCCeEEecCC------eeEEEE--cC--eEEEeecHHHHhhcCCCCc
Q 002354 626 ---------TVHPIGKAIVEAAEFSNCQNVKVADGTFIEEPGS------GTVAII--ED--RKVSVGTIDWLRSHGVDTS 686 (932)
Q Consensus 626 ---------s~hPi~~Ai~~~a~~~~~~~~~~~~~~~~~~~g~------g~~~~i--~~--~~~~~Gs~~~i~~~~~~~~ 686 (932)
..||+++|++++++..+.+........+.+.|+. ++.... ++ ..+.||++|.+...|....
T Consensus 395 ~~~~~~~~~~g~p~e~All~~~~~~~~~~~~~~~~~~~~~pF~s~~k~m~v~~~~~~~~~~~~~~KGape~il~~c~~~~ 474 (884)
T TIGR01522 395 KFRNEADTLLGNPTDVALIELLMKFGLDDLRETYIRVAEVPFSSERKWMAVKCVHRQDRSEMCFMKGAYEQVLKYCTYYQ 474 (884)
T ss_pred eecCCCCCcCCChHHHHHHHHHHHcCcHhHHhhCcEEeEeCCCCCCCeEEEEEEEcCCCeEEEEEeCChHHHHHhhhhhh
Confidence 1359999999999876653211112233444432 222222 22 3478999999998775321
Q ss_pred -------hh---------hhHHHHHhCCCeEEEEEECC-----EEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCC
Q 002354 687 -------TF---------QEVEMEDLMNQSLVYVGVDN-----MLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDK 745 (932)
Q Consensus 687 -------~~---------~~~~~~~~~g~~~~~va~~~-----~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~ 745 (932)
.. +..+.+..+|.++++++++. +|+|+++++|++||+++++|+.|+++|++++|+|||+
T Consensus 475 ~~~g~~~~l~~~~~~~i~~~~~~~a~~G~rvl~~A~~~~~~~l~~lGli~l~Dp~r~~~~~~i~~l~~~Gi~v~miTGD~ 554 (884)
T TIGR01522 475 KKDGKTLTLTQQQRDVIQEEAAEMASAGLRVIAFASGPEKGQLTFLGLVGINDPPRPGVKEAVTTLITGGVRIIMITGDS 554 (884)
T ss_pred hcCCCeeeCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCCeEEEEEEeccCcchhHHHHHHHHHHHCCCeEEEECCCC
Confidence 00 01123456799999999854 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCC-------------------------ceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHHHH
Q 002354 746 KNSAEYVASLVGIPKD-------------------------KVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALA 800 (932)
Q Consensus 746 ~~~a~~ia~~~gi~~~-------------------------~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~ 800 (932)
..+|.++|+++||... .+|+|++|+||.++|+.+|+.|+.|+|+|||.||+|||+
T Consensus 555 ~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K~~iv~~lq~~g~~v~mvGDGvND~pAl~ 634 (884)
T TIGR01522 555 QETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHKMKIVKALQKRGDVVAMTGDGVNDAPALK 634 (884)
T ss_pred HHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHH
Confidence 9999999999999631 599999999999999999999999999999999999999
Q ss_pred hCCeeEEec-CchHHHHhhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHH
Q 002354 801 SSHIGVAMG-GGVGAASEVASVVLMGNRLSQLLVALELSRLTMKTVKQNLWWAFGYNIVGIPIAAGVLLPVTGTMLTPSI 879 (932)
Q Consensus 801 ~A~vgIa~~-~~~~~a~~~ad~vl~~~~~~~i~~~i~~gR~~~~~i~~nl~~a~~~N~i~i~la~~~~~~~~g~~l~P~~ 879 (932)
+|||||+|| +|++.++++||+++++|++..+.+++++||++++|||||+.|.++.|+..+.+.+.. .++| ...|+.
T Consensus 635 ~AdVGia~g~~g~~va~~aaDivl~dd~~~~i~~~i~~gR~~~~ni~k~i~~~l~~ni~~~~~~~~~--~~~~-~~~pl~ 711 (884)
T TIGR01522 635 LADIGVAMGQTGTDVAKEAADMILTDDDFATILSAIEEGKGIFNNIKNFITFQLSTSVAALSLIALA--TLMG-FPNPLN 711 (884)
T ss_pred hCCeeEecCCCcCHHHHHhcCEEEcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--HHHc-CCCchh
Confidence 999999999 799999999999999999999999999999999999999999999999877664321 2233 246777
Q ss_pred HHHHhhhhHHHHHHHhhhhccccccccccccCCCCCCCCCCcccccc
Q 002354 880 AGALMGLSSIGVMANSLLLRLKFSSKQKASFQAPSSRVNSNVDSHQL 926 (932)
Q Consensus 880 aa~~m~~ssl~v~lnsl~l~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 926 (932)
+..+..+.-+...+.++.|.+ .+++.+.+++||.+.+....++.|
T Consensus 712 ~~qiL~inl~~d~~~a~~l~~--e~~~~~~m~~~P~~~~~~~~~~~~ 756 (884)
T TIGR01522 712 AMQILWINILMDGPPAQSLGV--EPVDKDVMRKPPRPRNDKILTKDL 756 (884)
T ss_pred HHHHHHHHHHHHhhHHHHhcc--CCCChhHhhCCCCCCCCCccCHHH
Confidence 778888888888888877765 445555688999888887777654
No 16
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=100.00 E-value=1.3e-83 Score=759.61 Aligned_cols=517 Identities=27% Similarity=0.384 Sum_probs=434.9
Q ss_pred hhhhHHH--HHHHHHHHHHHHHHHHHHhHHHHHhhhccCCC-eEEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEee
Q 002354 325 FFEEPIM--LIAFVLLGKNLEQRAKIKATSDMTGLLGILPS-KARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPA 401 (932)
Q Consensus 325 yf~~~~~--il~~~llg~~le~~~~~ka~~~l~~L~~~~p~-~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPa 401 (932)
||+..+. +++.++++.++|.++++|+++.+++|+++.|+ .++|+|++ |++++|++++|+|||+|.|++||+||+
T Consensus 64 ~~~~~i~~~l~~~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~a~vlr~d---g~~~~V~~~~L~~GDiV~V~~Gd~IPa 140 (675)
T TIGR01497 64 LFNAIITGILFITVLFANFAEAVAEGRGKAQADSLKGTKKTTFAKLLRDD---GAIDKVPADQLKKGDIVLVEAGDVIPC 140 (675)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeeC---CEEEEEEHHHCCCCCEEEECCCCEEee
Confidence 4554433 33447899999999999999999999999887 48887643 588999999999999999999999999
Q ss_pred eEEEEeeeeEEeccccccCCCceeecCCCc---cccceeeecCcEEEEEEecCCcchHHHHHHHHHHhhcCCChHHHHHH
Q 002354 402 DGVVRAGRSTVDESSFTGEPLPVTKIPESE---VAAGSINLNGTLTVEVRRPGGETAMGDIVRLVEEAQSREAPVQRLAD 478 (932)
Q Consensus 402 Dgvll~G~~~VDES~LTGES~Pv~K~~g~~---V~aGt~v~~G~~~~~V~~tG~~T~~gki~~~v~~a~~~~~~lq~~~d 478 (932)
||+|++|++.||||+|||||.||.|++|+. ||+||.+.+|.++++|+++|.+|+++||++++++++.+|+|+|...+
T Consensus 141 DG~vieG~~~VDESaLTGES~PV~K~~g~~~~~V~aGT~v~~G~~~i~Vt~~g~~S~lgri~~lve~a~~~ktplq~~l~ 220 (675)
T TIGR01497 141 DGEVIEGVASVDESAITGESAPVIKESGGDFASVTGGTRILSDWLVVECTANPGETFLDRMIALVEGAQRRKTPNEIALT 220 (675)
T ss_pred eEEEEEccEEEEcccccCCCCceeecCCCCcceeecCcEEEeeEEEEEEEEecccCHHHHHHHHHHhcccCCChHHHHHH
Confidence 999999999999999999999999999985 99999999999999999999999999999999999999999998877
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhccCcccchhccCCcHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhhhcCccc
Q 002354 479 QVSGHFTYGVIALSAATFVFWNLFGAHVLPTAIQYGGPVSLALQLSCSVLVVACPCALGLATPTAMLVGTSLGATRGLLL 558 (932)
Q Consensus 479 ~~~~~~~~~vl~la~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ai~vLvva~P~aL~la~p~a~~~~~~~~a~~gilv 558 (932)
.+..++..+.+ ++. +.+|.+.. +.+. ..++..++++++++|||+|+...|.....++.+++|+|+++
T Consensus 221 ~l~~~l~~v~l-i~~--~~~~~~~~--------~~~~--~~~~~~lvallV~aiP~aLg~l~~av~iag~~r~ar~gvLv 287 (675)
T TIGR01497 221 ILLIALTLVFL-LVT--ATLWPFAA--------YGGN--AISVTVLVALLVCLIPTTIGGLLSAIGIAGMDRVLGFNVIA 287 (675)
T ss_pred HHHHHHHHHHH-HHH--HHHHHHHH--------hcCh--hHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHCCeEe
Confidence 76654433322 222 22232210 0111 23567789999999999999888988889999999999999
Q ss_pred cCchHHHhcccccEEEecCCCCcccCceEEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHhcccCCCcHHHHHHHHH
Q 002354 559 RGGNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLSETEILKFAAGVESNTVHPIGKAIVEAA 638 (932)
Q Consensus 559 k~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ll~laa~~e~~s~hPi~~Ai~~~a 638 (932)
|+++++|.+|++|+||||||||||+|+|++.++++. ++.++++++++++.++..++||+++|+++++
T Consensus 288 K~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~-------------~~~~~~~ll~~aa~~~~~s~hP~a~Aiv~~a 354 (675)
T TIGR01497 288 TSGRAVEACGDVDTLLLDKTGTITLGNRLASEFIPA-------------QGVDEKTLADAAQLASLADDTPEGKSIVILA 354 (675)
T ss_pred eCcHHHHHhhCCCEEEECCCCcccCCCeEEEEEEec-------------CCCcHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 999999999999999999999999999999999864 3456778999999999999999999999999
Q ss_pred HhcCCcccccc--CCCeEEecCC-eeEEE--EcCeEEEeecHHHHhhcCC----CCc-h-hhhHHHHHhCCCeEEEEEEC
Q 002354 639 EFSNCQNVKVA--DGTFIEEPGS-GTVAI--IEDRKVSVGTIDWLRSHGV----DTS-T-FQEVEMEDLMNQSLVYVGVD 707 (932)
Q Consensus 639 ~~~~~~~~~~~--~~~~~~~~g~-g~~~~--i~~~~~~~Gs~~~i~~~~~----~~~-~-~~~~~~~~~~g~~~~~va~~ 707 (932)
+..+.+..... ..++...++. ++++. .+++.+.||+++++.+.+. ... . .+..+..+.+|.+++++++|
T Consensus 355 ~~~~~~~~~~~~~~~~~~pf~~~~~~sg~~~~~g~~~~kGa~e~i~~~~~~~g~~~~~~~~~~~~~~a~~G~r~l~va~~ 434 (675)
T TIGR01497 355 KQLGIREDDVQSLHATFVEFTAQTRMSGINLDNGRMIRKGAVDAIKRHVEANGGHIPTDLDQAVDQVARQGGTPLVVCED 434 (675)
T ss_pred HHcCCCccccccccceEEEEcCCCcEEEEEEeCCeEEEECCHHHHHHHHHhcCCCCcHHHHHHHHHHHhCCCeEEEEEEC
Confidence 87665422111 1223333333 55554 3678899999988765432 111 1 11223456789999999999
Q ss_pred CEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecccChhhHHHHHHHHhhCCCEEE
Q 002354 708 NMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVA 787 (932)
Q Consensus 708 ~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~ 787 (932)
++++|++.++|++||+++++|++||++|++++|+|||+..+|.++|+++||+ +++++++|+||.++|+.+|++|+.|+
T Consensus 435 ~~~lG~i~l~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~--~v~a~~~PedK~~~v~~lq~~g~~Va 512 (675)
T TIGR01497 435 NRIYGVIYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVD--DFIAEATPEDKIALIRQEQAEGKLVA 512 (675)
T ss_pred CEEEEEEEecccchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC--EEEcCCCHHHHHHHHHHHHHcCCeEE
Confidence 9999999999999999999999999999999999999999999999999997 79999999999999999999999999
Q ss_pred EEcCCcccHHHHHhCCeeEEecCchHHHHhhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q 002354 788 MVGDGINDAAALASSHIGVAMGGGVGAASEVASVVLMGNRLSQLLVALELSRLTMKTVKQNLWWAFGYNI----VGIPIA 863 (932)
Q Consensus 788 ~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl~~~~~~~i~~~i~~gR~~~~~i~~nl~~a~~~N~----i~i~la 863 (932)
|+|||+||+|||++|||||||++|++.++++||++++++|+..|.+++++||+++-+...-..|++.-++ ..||..
T Consensus 513 mvGDG~NDapAL~~AdvGiAm~~gt~~akeaadivLldd~~s~Iv~av~~GR~~~~t~~~~~t~~~~~~~~~~~~~~~~~ 592 (675)
T TIGR01497 513 MTGDGTNDAPALAQADVGVAMNSGTQAAKEAANMVDLDSDPTKLIEVVHIGKQLLITRGALTTFSIANDVAKYFAIIPAI 592 (675)
T ss_pred EECCCcchHHHHHhCCEeEEeCCCCHHHHHhCCEEECCCCHHHHHHHHHHHHHHHHHHHHHheeeecccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888888888876544 455555
Q ss_pred hhhhhcccc
Q 002354 864 AGVLLPVTG 872 (932)
Q Consensus 864 ~~~~~~~~g 872 (932)
+...||..+
T Consensus 593 ~~~~~~~~~ 601 (675)
T TIGR01497 593 FAAAYPQLQ 601 (675)
T ss_pred HHhhCcchh
Confidence 555555443
No 17
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-84 Score=737.41 Aligned_cols=588 Identities=23% Similarity=0.325 Sum_probs=469.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccCCCeEEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeeeEEE
Q 002354 326 FEEPIMLIAFVLLGKNLEQRAKIKATSDMTGLLGILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVV 405 (932)
Q Consensus 326 f~~~~~il~~~llg~~le~~~~~ka~~~l~~L~~~~p~~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvl 405 (932)
|+++..|.+.+++.....-++++|+++++++|+++.|+.++|+|+ |+.+.+++++|||||||.++-||+||||.+|
T Consensus 78 ~~e~~vI~liiv~nvtVG~~QEy~aEkalEaLk~l~p~~~~V~R~----gk~~~i~A~eLVPGDiV~l~vGDkVPADlRl 153 (972)
T KOG0202|consen 78 FDEPFVITLIIVINVTVGFVQEYNAEKALEALKELVPPMAHVLRS----GKLQHILARELVPGDIVELKVGDKIPADLRL 153 (972)
T ss_pred cccceeeeeeeeeeeeeeeeeehhhHHHHHHHHhcCCccceEEec----CcccceehhccCCCCEEEEecCCccccceeE
Confidence 455555555555555555566667889999999999999999998 5899999999999999999999999999999
Q ss_pred Eee-eeEEeccccccCCCceeecC--------------CCccccceeeecCcEEEEEEecCCcchHHHHHHHHHHhhcCC
Q 002354 406 RAG-RSTVDESSFTGEPLPVTKIP--------------ESEVAAGSINLNGTLTVEVRRPGGETAMGDIVRLVEEAQSRE 470 (932)
Q Consensus 406 l~G-~~~VDES~LTGES~Pv~K~~--------------g~~V~aGt~v~~G~~~~~V~~tG~~T~~gki~~~v~~a~~~~ 470 (932)
++- +..||||.|||||.|+.|.. .+.+|+||.+..|.++++|+.||.+|.+|+|.+++++.++.|
T Consensus 154 ~e~~sl~iDeS~LTGEs~pv~K~t~~v~~~~~~~~~dk~NiaFsGT~V~~G~a~GIVi~TG~nTeiG~I~~~m~~~e~~k 233 (972)
T KOG0202|consen 154 IEAKSLRIDESSLTGESEPVSKDTDAVPKDENADVQDKKNIAFSGTLVVAGRAKGIVIGTGLNTEIGKIFKMMQATESPK 233 (972)
T ss_pred EeeeeeeeecccccCCcccccccCccccCCCCCccccceeeEeecceeecCceeEEEEeccccchHHHHHHHHhccCCCC
Confidence 975 47899999999999999943 235899999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhccCcccchhccC---CcHHHHHHHHHHHHHHHhhhcchhhHHHHHHH
Q 002354 471 APVQRLADQVSGHFTYGVIALSAATFVF-WNLFGAHVLPTAIQYG---GPVSLALQLSCSVLVVACPCALGLATPTAMLV 546 (932)
Q Consensus 471 ~~lq~~~d~~~~~~~~~vl~la~~~~i~-~~~~~~~~~~~~~~~~---~~~~~~l~~ai~vLvva~P~aL~la~p~a~~~ 546 (932)
+|+|+..|++...+..++.++++.+++. ..++. .| ...+ ..+...|..++++.+.++|.+|+..++++++.
T Consensus 234 TPLqk~ld~~G~qLs~~is~i~v~v~~~nig~f~---~p--~~~g~~fk~~~~~f~IaVsLAVAAIPEGLPaVvT~tLAL 308 (972)
T KOG0202|consen 234 TPLQKKLDEFGKQLSKVISFICVGVWLLNIGHFL---DP--VHGGSWFKGALYYFKIAVSLAVAAIPEGLPAVVTTTLAL 308 (972)
T ss_pred CcHHHHHHHHHHHHHHHheehhhhHHHhhhhhhc---cc--cccccchhchhhhhhHHHHHHHHhccCCCcchhhhhHHH
Confidence 9999999999999886666666655444 11111 01 0111 34567788999999999999999999999999
Q ss_pred HHHHhhhcCccccCchHHHhcccccEEEecCCCCcccCceEEEEEEecCCCCCCC-------------CC---C---CCC
Q 002354 547 GTSLGATRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPN-------------SK---Q---NPI 607 (932)
Q Consensus 547 ~~~~~a~~gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~~~-------------~~---~---~~~ 607 (932)
|..+|+|++.++|++.++|+||.+++||.|||||||+|+|.+.+++..+...... .. . ...
T Consensus 309 G~~rMakknaIVRkLPsVETLGc~~VICSDKTGTLTtN~Mtv~~i~~~~~~~~~~~~f~~tg~ty~~~g~v~~~~~~~~~ 388 (972)
T KOG0202|consen 309 GTRRMAKKNAIVRKLPSVETLGCVNVICSDKTGTLTTNQMTVSKIFIPDGGTATVDEFNPTGTTYSPEGEVFKDGLYEKD 388 (972)
T ss_pred hHHHHHhhhhhhhcccchhhccceeEEecCCCCcccccceEEEEEEecccccccccccccCCceeCCCCceEecCccccc
Confidence 9999999999999999999999999999999999999999999999865332211 00 0 000
Q ss_pred CCCCHH---HHHHHHHH-----hccc-------CCCcHHHHHHHHHHhcCCccccccCC--------------------C
Q 002354 608 HPLSET---EILKFAAG-----VESN-------TVHPIGKAIVEAAEFSNCQNVKVADG--------------------T 652 (932)
Q Consensus 608 ~~~~~~---~ll~laa~-----~e~~-------s~hPi~~Ai~~~a~~~~~~~~~~~~~--------------------~ 652 (932)
.+...+ +++..++. ++++ -..|.+.|+...+++.++........ +
T Consensus 389 ~~~~~~~l~~l~~i~~lCNda~v~~~~~~~~~~~G~pTE~AL~vlaeKm~l~~~~~~~~s~~~~~~c~~~~~~~~~~~~e 468 (972)
T KOG0202|consen 389 KAGDNDLLQELAEICALCNDATVEYNDADCYEKVGEPTEGALIVLAEKMGLPGTRSTNLSNEEASACNRVYSRLFKKIAE 468 (972)
T ss_pred cccccHHHHHHHHHHHhhhhhhhhcCchhhHHhcCCchHHHHHHHHHHcCCCcchhhcccccccccchhHHHHhhhheeE
Confidence 112222 33333322 2212 25799999999998877653221111 1
Q ss_pred eEEecCCeeEEEE-----c---CeEEEeecHHHHhhcCCCCc--------hhh---------hHHHHHhCCCeEEEEEE-
Q 002354 653 FIEEPGSGTVAII-----E---DRKVSVGTIDWLRSHGVDTS--------TFQ---------EVEMEDLMNQSLVYVGV- 706 (932)
Q Consensus 653 ~~~~~g~g~~~~i-----~---~~~~~~Gs~~~i~~~~~~~~--------~~~---------~~~~~~~~g~~~~~va~- 706 (932)
+.+...+..++.+ . ...|.||++|.+.++|.... +.. ...+...+|.+++.++.
T Consensus 469 lpFssdrK~Msv~c~~~~~~~~~~~fvKGA~E~Vl~rcs~~~~~~g~~~~pLt~~~re~il~~~~~~g~~gLRvLalA~~ 548 (972)
T KOG0202|consen 469 LPFSSDRKSMSVKCSPAHGQSGYKMFVKGAPESVLERCSTYYGSDGQTKVPLTQASRETILANVYEMGSEGLRVLALASK 548 (972)
T ss_pred eecccccceEEEEEecCCCCccceEEecCChHHHHHhhhcEEccCCceeeeCcHHHHHHHHHHHHHHhhccceEEEEEcc
Confidence 1112222222221 1 24599999999999884211 111 11124456778887764
Q ss_pred -----------------------CCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC--
Q 002354 707 -----------------------DNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD-- 761 (932)
Q Consensus 707 -----------------------~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~-- 761 (932)
|++|+|++++.||+|++++++|+.|+++||+|+|+|||+..||++||+++|+..+
T Consensus 549 ~~~~~~~~~~~l~~~s~~~~~E~~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~e 628 (972)
T KOG0202|consen 549 DSPGQVPDDQDLNDTSNRATAESDLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDE 628 (972)
T ss_pred CCcccChhhhhhcccccccccccceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCc
Confidence 5689999999999999999999999999999999999999999999999998532
Q ss_pred ---------------------------ceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHHHHhCCeeEEec-CchH
Q 002354 762 ---------------------------KVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALASSHIGVAMG-GGVG 813 (932)
Q Consensus 762 ---------------------------~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~vgIa~~-~~~~ 813 (932)
.+|+|++|+.|.++|+.||+.|+.|+|.|||+||+||||.||+||||| +|+|
T Consensus 629 d~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~~P~HK~kIVeaLq~~geivAMTGDGVNDApALK~AdIGIAMG~~GTd 708 (972)
T KOG0202|consen 629 DVSSMALTGSEFDDLSDEELDDAVRRVLVFARAEPQHKLKIVEALQSRGEVVAMTGDGVNDAPALKKADIGIAMGISGTD 708 (972)
T ss_pred cccccccchhhhhcCCHHHHHHHhhcceEEEecCchhHHHHHHHHHhcCCEEEecCCCccchhhhhhcccceeecCCccH
Confidence 689999999999999999999999999999999999999999999999 9999
Q ss_pred HHHhhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHhhhhHHHHHH
Q 002354 814 AASEVASVVLMGNRLSQLLVALELSRLTMKTVKQNLWWAFGYNIVGIPIAAGVLLPVTGTMLTPSIAGALMGLSSIGVMA 893 (932)
Q Consensus 814 ~a~~~ad~vl~~~~~~~i~~~i~~gR~~~~~i~~nl~~a~~~N~i~i~la~~~~~~~~g~~l~P~~aa~~m~~ssl~v~l 893 (932)
.+|++||+||.||||+.|..++++||.+|+|||+++.|.++.|+..+.+-+ +...+|+ -.|+.+..+.+..-+.--.
T Consensus 709 VaKeAsDMVL~DDnFstIvaAVEEGr~IynNik~Fir~~lSsnVgev~~I~--l~aa~~~-p~pL~pvQiLWiNlvtDG~ 785 (972)
T KOG0202|consen 709 VAKEASDMVLADDNFSTIVAAVEEGRAIYNNIKNFIRYLLSSNVGEVVLIF--LTAAFGI-PEPLIPVQILWINLVTDGP 785 (972)
T ss_pred hhHhhhhcEEecCcHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHhCC-CCcccchhhheeeeeccCC
Confidence 999999999999999999999999999999999999999999986543322 1112343 3677777888887777777
Q ss_pred HhhhhccccccccccccCCCCCCCCCCccccccc
Q 002354 894 NSLLLRLKFSSKQKASFQAPSSRVNSNVDSHQLM 927 (932)
Q Consensus 894 nsl~l~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 927 (932)
.|..| -+.|..++++++||++.+.+++|+.|+
T Consensus 786 PA~aL--G~ep~D~DiM~kpPR~~~~~iit~~l~ 817 (972)
T KOG0202|consen 786 PATAL--GFEPVDPDIMKKPPRDSKDGIITGWLI 817 (972)
T ss_pred chhhc--CCCCCChhHHhCCCCCCCCCeeeHHHH
Confidence 77666 457888899999999999999999875
No 18
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=100.00 E-value=1.7e-80 Score=778.18 Aligned_cols=578 Identities=21% Similarity=0.263 Sum_probs=469.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccCCCeEEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeeeEE
Q 002354 325 FFEEPIMLIAFVLLGKNLEQRAKIKATSDMTGLLGILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGV 404 (932)
Q Consensus 325 yf~~~~~il~~~llg~~le~~~~~ka~~~l~~L~~~~p~~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgv 404 (932)
+|..++.+++++++...++.++++|+.+.+++|.++.|.+++|+|+ |++++|++++|+|||+|.|++||+|||||+
T Consensus 103 ~~~~~~~i~~vv~i~~~i~~~qe~ka~~~l~~l~~~~~~~~~ViRd----g~~~~I~~~~lv~GDiv~l~~Gd~IPaD~~ 178 (997)
T TIGR01106 103 NLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRD----GEKMSINAEQVVVGDLVEVKGGDRIPADLR 178 (997)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEC----CEEEEeeHHHCCCCCEEEECCCCEEeeeEE
Confidence 4445666777788888899999999999999999999999999987 589999999999999999999999999999
Q ss_pred EEeee-eEEeccccccCCCceeecCCC----------ccccceeeecCcEEEEEEecCCcchHHHHHHHHHHhhcCCChH
Q 002354 405 VRAGR-STVDESSFTGEPLPVTKIPES----------EVAAGSINLNGTLTVEVRRPGGETAMGDIVRLVEEAQSREAPV 473 (932)
Q Consensus 405 ll~G~-~~VDES~LTGES~Pv~K~~g~----------~V~aGt~v~~G~~~~~V~~tG~~T~~gki~~~v~~a~~~~~~l 473 (932)
|++|+ +.||||+|||||.|+.|.+++ .+|+||.+.+|.+.++|++||.+|.+|++.+++++++.+++|+
T Consensus 179 il~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~l~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~pl 258 (997)
T TIGR01106 179 IISAQGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTVMGRIASLASGLENGKTPI 258 (997)
T ss_pred EEEccCcEEEccccCCCCCceeccCCCcccCccccCCeEEeccEeeeeeEEEEEEEccccchhhHHHhhhhhcccCCCcH
Confidence 99996 799999999999999998874 5999999999999999999999999999999999988889999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcccchhccCCcHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhhh
Q 002354 474 QRLADQVSGHFTYGVIALSAATFVFWNLFGAHVLPTAIQYGGPVSLALQLSCSVLVVACPCALGLATPTAMLVGTSLGAT 553 (932)
Q Consensus 474 q~~~d~~~~~~~~~vl~la~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ai~vLvva~P~aL~la~p~a~~~~~~~~a~ 553 (932)
|+.+++++.+++++++++++++|++|.+.+ .+|..++.+++++++++|||+|++++++++..+..++++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~i~v~v~~iP~~L~~~v~i~l~~~~~~m~~ 327 (997)
T TIGR01106 259 AIEIEHFIHIITGVAVFLGVSFFILSLILG-----------YTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMAR 327 (997)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHH
Confidence 999999999999998888888877765443 245678888999999999999999999999999999999
Q ss_pred cCccccCchHHHhcccccEEEecCCCCcccCceEEEEEEecCCCCCCCCCCCC----CCC--CCHHHHHHHHHHhcc---
Q 002354 554 RGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNP----IHP--LSETEILKFAAGVES--- 624 (932)
Q Consensus 554 ~gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~~~----~~~--~~~~~ll~laa~~e~--- 624 (932)
+|+++|+++++|+||++|+||||||||||+|+|+|.+++..+..+..+..... .+. .....++..++.+..
T Consensus 328 ~~ilvk~~~aiE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~alcn~~~~ 407 (997)
T TIGR01106 328 KNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTEDQSGVSFDKSSATWLALSRIAGLCNRAVF 407 (997)
T ss_pred CCcEecCcHHHHHhcCCCEEEECCCCceecCceEEEEEEECCeEEecCCccCCCCccCCcccHHHHHHHHHHHHcCCCee
Confidence 99999999999999999999999999999999999999876543322111000 010 111245554444321
Q ss_pred -------------cCCCcHHHHHHHHHHhcCCccccc--cCCCeEEe---cCCeeEEE-E--c---C---eEEEeecHHH
Q 002354 625 -------------NTVHPIGKAIVEAAEFSNCQNVKV--ADGTFIEE---PGSGTVAI-I--E---D---RKVSVGTIDW 677 (932)
Q Consensus 625 -------------~s~hPi~~Ai~~~a~~~~~~~~~~--~~~~~~~~---~g~g~~~~-i--~---~---~~~~~Gs~~~ 677 (932)
...+|++.|+++++...+...... ......+. +.+..+.. + + + ..+.||++|.
T Consensus 408 ~~~~~~~~~~~~~~~gdp~E~ALl~~a~~~~~~~~~~~~~~~~v~~~pF~s~rK~m~~v~~~~~~~~~~~~~~~KGApe~ 487 (997)
T TIGR01106 408 KAGQENVPILKRAVAGDASESALLKCIELCLGSVMEMRERNPKVVEIPFNSTNKYQLSIHENEDPRDPRHLLVMKGAPER 487 (997)
T ss_pred ccccCCCcccccccCcChHHHHHHHHHHHhCCCHHHHHhhCceeEEeccCCCCceEEEEEeccCCCCceEEEEEeCChHH
Confidence 124789999999987543221111 11112222 23332222 2 1 1 2479999999
Q ss_pred HhhcCCCC------ch-----hh----hHHHHHhCCCeEEEEEE------------------------CCEEEEEEEecc
Q 002354 678 LRSHGVDT------ST-----FQ----EVEMEDLMNQSLVYVGV------------------------DNMLAGLIYVED 718 (932)
Q Consensus 678 i~~~~~~~------~~-----~~----~~~~~~~~g~~~~~va~------------------------~~~~lG~i~l~D 718 (932)
+.+.|... .. .+ ..++++.+|.+++.+++ |++|+|+++++|
T Consensus 488 Il~~c~~~~~~g~~~~l~~~~~~~~~~~~~~~a~~GlRvla~A~k~l~~~~~~~~~~~~~~~~~~~e~~L~flGli~i~D 567 (997)
T TIGR01106 488 ILERCSSILIHGKEQPLDEELKEAFQNAYLELGGLGERVLGFCHLYLPDEQFPEGFQFDTDDVNFPTDNLCFVGLISMID 567 (997)
T ss_pred HHHHhhHHhcCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEEeecCcccccccccccchhhhccccCcEEEEEEeccC
Confidence 99988421 00 01 12235567888887663 456999999999
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC-------------------------------------
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD------------------------------------- 761 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~------------------------------------- 761 (932)
++|++++++|++|+++|++++|+|||+..+|.++|+++|+..+
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~l 647 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDM 647 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhHHhhhC
Confidence 9999999999999999999999999999999999999999310
Q ss_pred --------------ceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHHHHhCCeeEEec-CchHHHHhhcCEEEeCC
Q 002354 762 --------------KVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALASSHIGVAMG-GGVGAASEVASVVLMGN 826 (932)
Q Consensus 762 --------------~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~vgIa~~-~~~~~a~~~ad~vl~~~ 826 (932)
.||||++|+||.++|+.+|+.|++|+|+|||.||+|||++|||||||| +|+|.++++||+++++|
T Consensus 648 ~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG~ND~paLk~AdVGiamg~~G~~vak~aADivL~dd 727 (997)
T TIGR01106 648 TSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVSKQAADMILLDD 727 (997)
T ss_pred CHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHhhCCcceecCCcccHHHHHhhceEEecC
Confidence 299999999999999999999999999999999999999999999999 79999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHhhhhHHHHHHHhhhhcccccccc
Q 002354 827 RLSQLLVALELSRLTMKTVKQNLWWAFGYNIVGIPIAAGVLLPVTGTMLTPSIAGALMGLSSIGVMANSLLLRLKFSSKQ 906 (932)
Q Consensus 827 ~~~~i~~~i~~gR~~~~~i~~nl~~a~~~N~i~i~la~~~~~~~~g~~l~P~~aa~~m~~ssl~v~lnsl~l~~~~~~~~ 906 (932)
++..|.+++++||+++.|+++++.|.++.|+..+.+.+.. .++| .-.|+.+..++.+.-+...+.++.|.+ .+.+
T Consensus 728 ~f~~Iv~ai~~GR~i~~ni~k~i~~~l~~ni~~~~~~~~~--~~~~-~~~pl~~~qlL~inli~d~lp~~al~~--e~~~ 802 (997)
T TIGR01106 728 NFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIF--IIAN-IPLPLGTITILCIDLGTDMVPAISLAY--EKAE 802 (997)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HHHc-CcchhHHHHHHHHHHHHHHHHHHHHhc--CCCC
Confidence 9999999999999999999999999999999766554422 2234 235777888888888888888888876 4455
Q ss_pred ccccCCCCCCC-CCCcc
Q 002354 907 KASFQAPSSRV-NSNVD 922 (932)
Q Consensus 907 ~~~~k~~~~~~-~~~~~ 922 (932)
.+.+++||++. +....
T Consensus 803 ~~~m~~~P~~~~~~~l~ 819 (997)
T TIGR01106 803 SDIMKRQPRNPKTDKLV 819 (997)
T ss_pred cccccCCCcCCcccccc
Confidence 55688777753 33444
No 19
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-81 Score=778.32 Aligned_cols=567 Identities=25% Similarity=0.333 Sum_probs=455.4
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhccCCCeEEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeeeEEEEeeee-EEecc
Q 002354 337 LLGKNLEQRAKIKATSDMTGLLGILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAGRS-TVDES 415 (932)
Q Consensus 337 llg~~le~~~~~ka~~~l~~L~~~~p~~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll~G~~-~VDES 415 (932)
.+...+...+..|+++.+++|+++.+.+++|+|+ |++++|+++||+|||+|.+++||+||||++|++++. .||||
T Consensus 114 ~~n~~~g~~qe~~a~~~l~~lk~~~~~~~~V~R~----g~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~~~~l~VdEs 189 (917)
T COG0474 114 VINALLGFVQEYRAEKALEALKKMSSPKAKVLRD----GKFVEIPASELVPGDIVLLEAGDVVPADLRLLESSDLEVDES 189 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCceEEEeC----CcEEEecHHHCCCCcEEEECCCCccccceEEEEecCceEEcc
Confidence 3333344445556777888888888999999996 699999999999999999999999999999999987 99999
Q ss_pred ccccCCCceeecC--------------CCccccceeeecCcEEEEEEecCCcchHHHHHHHHHHhhcCCChHHHHHHHHH
Q 002354 416 SFTGEPLPVTKIP--------------ESEVAAGSINLNGTLTVEVRRPGGETAMGDIVRLVEEAQSREAPVQRLADQVS 481 (932)
Q Consensus 416 ~LTGES~Pv~K~~--------------g~~V~aGt~v~~G~~~~~V~~tG~~T~~gki~~~v~~a~~~~~~lq~~~d~~~ 481 (932)
+|||||.|+.|.+ .+.+|+||.+.+|.+.+.|++||.+|.+|++.+++.......+|+|+.++++.
T Consensus 190 ~LTGES~pv~K~~~~~~~~~~~~~~d~~n~l~sGt~V~~G~~~giVvaTG~~T~~G~ia~~~~~~~~~~t~l~~~l~~~~ 269 (917)
T COG0474 190 ALTGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGFETEFGKIARLLPTKKEVKTPLQRKLNKLG 269 (917)
T ss_pred cccCCCcchhccccccccccccccCCccceEEeCCEEEcceEEEEEEEEcCccHHHHHHHhhccccccCCcHHHHHHHHH
Confidence 9999999999963 46789999999999999999999999999999999998788999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCcccchhccCCcHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhhhcCccccCc
Q 002354 482 GHFTYGVIALSAATFVFWNLFGAHVLPTAIQYGGPVSLALQLSCSVLVVACPCALGLATPTAMLVGTSLGATRGLLLRGG 561 (932)
Q Consensus 482 ~~~~~~vl~la~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ai~vLvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~ 561 (932)
.++..+.+++++++|+...+.+. .+|...+..++++++.++|.+|+..++++++.+..+++++++++|++
T Consensus 270 ~~l~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~~v~l~va~IPegLp~~vti~la~g~~~mak~~~ivr~l 339 (917)
T COG0474 270 KFLLVLALVLGALVFVVGLFRGG----------NGLLESFLTALALAVAAVPEGLPAVVTIALALGAQRMAKDNAIVRSL 339 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC----------ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccchhhcc
Confidence 99999999988888887644322 23688999999999999999999999999999999999999999999
Q ss_pred hHHHhcccccEEEecCCCCcccCceEEEEEEecCCCCCCCCCCCCCCCCCH--HHHHHHHHH---hccc------CCCcH
Q 002354 562 NILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLSE--TEILKFAAG---VESN------TVHPI 630 (932)
Q Consensus 562 ~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~~~~~~~~~--~~ll~laa~---~e~~------s~hPi 630 (932)
+++|+||++++||+|||||||+|+|+|.+++..+...+.. ......++ .+++..++. .... ..+|.
T Consensus 340 ~avE~LG~v~vICsDKTGTLTqN~M~v~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~lc~~~~~~~~~~~~~gdpt 416 (917)
T COG0474 340 NAIETLGSVDVICSDKTGTLTQNKMTVKKIYINGGGKDID---DKDLKDSPALLRFLLAAALCNSVTPEKNGWYQAGDPT 416 (917)
T ss_pred chhhhccCccEEEecCCCCCccCeEEEEEEEeCCCccccc---ccccccchHHHHHHHHHHhcCcccccccCceecCCcc
Confidence 9999999999999999999999999999999874100000 00001111 122221111 1122 56999
Q ss_pred HHHHHHHHHhcCC--ccccccC-----CCeEEecCCeeEEEEc----C--eEEEeecHHHHhhcCCCC------c--hhh
Q 002354 631 GKAIVEAAEFSNC--QNVKVAD-----GTFIEEPGSGTVAIIE----D--RKVSVGTIDWLRSHGVDT------S--TFQ 689 (932)
Q Consensus 631 ~~Ai~~~a~~~~~--~~~~~~~-----~~~~~~~g~g~~~~i~----~--~~~~~Gs~~~i~~~~~~~------~--~~~ 689 (932)
+.||++.+++.+. +...... ..+.+.+.+..++.+. + ..++||+++.|.+.|... . ..+
T Consensus 417 E~Al~~~a~~~~~~~~~~~~~~~~~~~~~~PFdS~rKrMsviv~~~~~~~~~~~KGApe~il~~~~~~~~~~~~~~~~~~ 496 (917)
T COG0474 417 EGALVEFAEKLGFSLDLSGLEVEYPILAEIPFDSERKRMSVIVKTDEGKYILFVKGAPEVILERCKSIGELEPLTEEGLR 496 (917)
T ss_pred HHHHHHHHHhcCCcCCHHHHhhhcceeEEecCCCCceEEEEEEEcCCCcEEEEEcCChHHHHHHhcccCcccccCHHHHH
Confidence 9999999998776 3222211 1222333344333332 1 348999999998876521 0 001
Q ss_pred ----hHHHHHhCCCeEEE-----------------EEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHH
Q 002354 690 ----EVEMEDLMNQSLVY-----------------VGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNS 748 (932)
Q Consensus 690 ----~~~~~~~~g~~~~~-----------------va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~ 748 (932)
...++..+|.+++. .+.|..|+|+++++||+|++++++|+.|+++||+++|+|||+..|
T Consensus 497 ~~~~~~~~la~~glRvla~A~k~~~~~~~~~~~~~~E~dl~~lGl~g~~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~T 576 (917)
T COG0474 497 TLEEAVKELASEGLRVLAVAYKKLDRAEKDDEVDEIESDLVFLGLTGIEDPPREDVKEAIEELREAGIKVWMITGDHVET 576 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcccccchhhhhhccceeehhhhccCCCCccHHHHHHHHHHCCCcEEEECCCCHHH
Confidence 11123333443333 344678999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCC---------------------------ceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHHHHh
Q 002354 749 AEYVASLVGIPKD---------------------------KVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALAS 801 (932)
Q Consensus 749 a~~ia~~~gi~~~---------------------------~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~ 801 (932)
|.+||++||+..+ .||||++|+||.++|+.||+.|+.|+|+|||.||+||||+
T Consensus 577 A~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvsP~qK~~IV~~lq~~g~vVamtGDGvNDapALk~ 656 (917)
T COG0474 577 AIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVSPEQKARIVEALQKSGHVVAMTGDGVNDAPALKA 656 (917)
T ss_pred HHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcCHHHHHHHHHHHHhCCCEEEEeCCCchhHHHHHh
Confidence 9999999997432 5899999999999999999999999999999999999999
Q ss_pred CCeeEEec-CchHHHHhhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhccccccccHHH
Q 002354 802 SHIGVAMG-GGVGAASEVASVVLMGNRLSQLLVALELSRLTMKTVKQNLWWAFGYNIVGIPIAA-GVLLPVTGTMLTPSI 879 (932)
Q Consensus 802 A~vgIa~~-~~~~~a~~~ad~vl~~~~~~~i~~~i~~gR~~~~~i~~nl~~a~~~N~i~i~la~-~~~~~~~g~~l~P~~ 879 (932)
|||||||| +|+|++|++||+++.++++..+..++++||++|.|+++.+.|.+.+|+..+.+.+ +.+ .+....|+.
T Consensus 657 ADVGIamg~~Gtdaak~Aadivl~dd~~~~i~~av~eGR~~~~ni~k~i~~~l~~n~~~~~~~~~~~~---~~~~~~p~~ 733 (917)
T COG0474 657 ADVGIAMGGEGTDAAKEAADIVLLDDNFATIVLAVVEGRRVYVNIKKFILYLLSKNVGEVLTLLIYSL---FNLFFLPLT 733 (917)
T ss_pred cCccEEecccHHHHHHhhcceEeecCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcccccHH
Confidence 99999998 7999999999999999999999999999999999999999999999998544433 222 232246888
Q ss_pred HHHHhhhhHHHHHHHhhhhccccccccccccCCCCCCCCCCccccc
Q 002354 880 AGALMGLSSIGVMANSLLLRLKFSSKQKASFQAPSSRVNSNVDSHQ 925 (932)
Q Consensus 880 aa~~m~~ssl~v~lnsl~l~~~~~~~~~~~~k~~~~~~~~~~~~~~ 925 (932)
+..++...-+...+.++.|.... ++.+.++.||.+.+.+.++..
T Consensus 734 ~~qll~inll~d~~pa~~L~~~~--~~~~~m~~~~~~p~~~i~~~~ 777 (917)
T COG0474 734 PLQLLWINLLTDSLPALALGVED--PESDVMKRPPRGPEEGLFNRK 777 (917)
T ss_pred HHHHHHHHHHHhhhhhheeecCC--CcccccccCCCCccccccchh
Confidence 88999998888998998887665 444556666666665555443
No 20
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=100.00 E-value=6.4e-80 Score=770.56 Aligned_cols=583 Identities=20% Similarity=0.241 Sum_probs=464.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccCCCeEEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeeeEEE
Q 002354 326 FEEPIMLIAFVLLGKNLEQRAKIKATSDMTGLLGILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVV 405 (932)
Q Consensus 326 f~~~~~il~~~llg~~le~~~~~ka~~~l~~L~~~~p~~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvl 405 (932)
|..++++++++++.-.+..++.+|+++++++|+++.+.+++|+|+ |++++|+++||||||||.+++||+||||++|
T Consensus 81 ~~~~~iIl~vv~in~~i~~~QE~~aekal~aL~~l~~~~~~ViRd----g~~~~I~a~eLVpGDIv~L~~Gd~VPAD~rL 156 (1053)
T TIGR01523 81 WIEGGVISAIIALNILIGFIQEYKAEKTMDSLKNLASPMAHVIRN----GKSDAIDSHDLVPGDICLLKTGDTIPADLRL 156 (1053)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeC----CeeeecCHhhCCCCCEEEECCCCEeeccEEE
Confidence 345677778888888999999999999999999999999999988 6899999999999999999999999999999
Q ss_pred Eee-eeEEeccccccCCCceeecCC---------------CccccceeeecCcEEEEEEecCCcchHHHHHHHHHHhhc-
Q 002354 406 RAG-RSTVDESSFTGEPLPVTKIPE---------------SEVAAGSINLNGTLTVEVRRPGGETAMGDIVRLVEEAQS- 468 (932)
Q Consensus 406 l~G-~~~VDES~LTGES~Pv~K~~g---------------~~V~aGt~v~~G~~~~~V~~tG~~T~~gki~~~v~~a~~- 468 (932)
+++ ++.||||+|||||.||.|.+. +.+|+||.+.+|.++++|++||.+|.+|||.+++.+...
T Consensus 157 i~~~~L~VDES~LTGES~pV~K~~~~~~~~~~~~~~~d~~n~lf~GT~V~~G~g~~vVvatG~~T~~GkIa~~~~~~~~~ 236 (1053)
T TIGR01523 157 IETKNFDTDEALLTGESLPVIKDAHATFGKEEDTPIGDRINLAFSSSAVTKGRAKGICIATALNSEIGAIAAGLQGDGGL 236 (1053)
T ss_pred EEeCceEEEchhhcCCCCceeccccccccccccCCcccCCCccccCceEEeeeEEEEEEEecCccHHHHHHHHHhhhhhc
Confidence 997 589999999999999999642 358999999999999999999999999999999865431
Q ss_pred ----------------------------------CCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcccchhccC
Q 002354 469 ----------------------------------REAPVQRLADQVSGHFTYGVIALSAATFVFWNLFGAHVLPTAIQYG 514 (932)
Q Consensus 469 ----------------------------------~~~~lq~~~d~~~~~~~~~vl~la~~~~i~~~~~~~~~~~~~~~~~ 514 (932)
.++|+|+.+++++.++..+.+++++++|++..+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tpLq~~l~~l~~~l~~i~~~~~~~~~~~~~~~------------ 304 (1053)
T TIGR01523 237 FQRPEKDDPNKRRKLNKWILKVTKKVTGAFLGLNVGTPLHRKLSKLAVILFCIAIIFAIIVMAAHKFD------------ 304 (1053)
T ss_pred cccccccccccchhhhcccccccccchhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------
Confidence 2499999999999988887777777766543210
Q ss_pred CcHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhhhcCccccCchHHHhcccccEEEecCCCCcccCceEEEEEEec
Q 002354 515 GPVSLALQLSCSVLVVACPCALGLATPTAMLVGTSLGATRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTS 594 (932)
Q Consensus 515 ~~~~~~l~~ai~vLvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~ 594 (932)
.+...+.+++++++.++|++|+..++++++.+..+++++++++|+++++|+||.+++||+|||||||+|+|+|.+++..
T Consensus 305 -~~~~~~~~av~l~Va~VPegLp~~vti~La~g~~rMak~~~lVr~L~avEtLG~vtvICsDKTGTLT~N~M~V~~i~~~ 383 (1053)
T TIGR01523 305 -VDKEVAIYAICLAISIIPESLIAVLSITMAMGAANMSKRNVIVRKLDALEALGAVNDICSDKTGTITQGKMIARQIWIP 383 (1053)
T ss_pred -hhHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCCEeccchhhhhccCccEEEecCcCccccceEEEEEEEEc
Confidence 1134667789999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CC-CC---------CCC-CC---------------C----C---------C----CCCCC---HHHHHHHHHHhc-----
Q 002354 595 GS-LT---------DPN-SK---------------Q----N---------P----IHPLS---ETEILKFAAGVE----- 623 (932)
Q Consensus 595 ~~-~~---------~~~-~~---------------~----~---------~----~~~~~---~~~ll~laa~~e----- 623 (932)
+. .+ .++ .. . + . ..+.. ..+++..++.+.
T Consensus 384 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~lcn~a~~~ 463 (1053)
T TIGR01523 384 RFGTISIDNSDDAFNPNEGNVSGIPRFSPYEYSHNEAADQDILKEFKDELKEIDLPEDIDMDLFIKLLETAALANIATVF 463 (1053)
T ss_pred CCceEEecCCCCCCCCcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHhccCCeee
Confidence 31 11 000 00 0 0 0 00000 123444333221
Q ss_pred --------ccCCCcHHHHHHHHHHhcCCccc------cc---------------------cCCCeEEec---CCeeEEEE
Q 002354 624 --------SNTVHPIGKAIVEAAEFSNCQNV------KV---------------------ADGTFIEEP---GSGTVAII 665 (932)
Q Consensus 624 --------~~s~hPi~~Ai~~~a~~~~~~~~------~~---------------------~~~~~~~~~---g~g~~~~i 665 (932)
....+|++.|+++++...+.+.. .. ......+.| .+..+.++
T Consensus 464 ~~~~~~~~~~~GdptE~ALl~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pFds~rK~msvv 543 (1053)
T TIGR01523 464 KDDATDCWKAHGDPTEIAIHVFAKKFDLPHNALTGEEDLLKSNENDQSSLSQHNEKPGSAQFEFIAEFPFDSEIKRMASI 543 (1053)
T ss_pred ccCCCCceeeCcCccHHHHHHHHHHcCCCcccccchhhhhhhccccccccccccccccccccceEEEeccCCCCCeEEEE
Confidence 01258999999999877665210 00 001112222 33333332
Q ss_pred ---c-C---eEEEeecHHHHhhcCCCCc--------hh---------hhHHHHHhCCCeEEEEEE---------------
Q 002354 666 ---E-D---RKVSVGTIDWLRSHGVDTS--------TF---------QEVEMEDLMNQSLVYVGV--------------- 706 (932)
Q Consensus 666 ---~-~---~~~~~Gs~~~i~~~~~~~~--------~~---------~~~~~~~~~g~~~~~va~--------------- 706 (932)
+ + ..++||++|.+.+.|.... +. +..++++.+|.+++.+++
T Consensus 544 ~~~~~~~~~~~~~KGApe~il~~c~~~~~~~~~~~~~l~~~~~~~i~~~~~~~a~~GlRvLa~A~r~l~~~~~~~~~~~~ 623 (1053)
T TIGR01523 544 YEDNHGETYNIYAKGAFERIIECCSSSNGKDGVKISPLEDCDRELIIANMESLAAEGLRVLAFASKSFDKADNNDDQLKN 623 (1053)
T ss_pred EEeCCCCEEEEEEeCChHHHHHhhhHhhcCCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEEEEEECCchhccchhhhc
Confidence 1 2 2378999999999885321 00 112335678999888763
Q ss_pred ----------CCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC---------------
Q 002354 707 ----------DNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD--------------- 761 (932)
Q Consensus 707 ----------~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~--------------- 761 (932)
|++|+|+++++|++|++++++|+.|+++||+++|+|||+..||.++|+++||..+
T Consensus 624 ~~~~~~~~e~~L~~~G~~~~~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vi 703 (1053)
T TIGR01523 624 ETLNRATAESDLEFLGLIGIYDPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNFIHDRDEIMDSMVM 703 (1053)
T ss_pred cccchhhhccCCEEEEEEeeecCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCccccccccccccceee
Confidence 4579999999999999999999999999999999999999999999999999532
Q ss_pred --------------------ceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHHHHhCCeeEEec-CchHHHHhhcC
Q 002354 762 --------------------KVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALASSHIGVAMG-GGVGAASEVAS 820 (932)
Q Consensus 762 --------------------~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~vgIa~~-~~~~~a~~~ad 820 (932)
.+|+|++|+||.++|+.+|++|+.|+|+|||+||+|||++|||||||| +|++.|+++||
T Consensus 704 tG~~l~~l~~~~l~~~~~~~~V~ar~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdVGIAmg~~gt~vak~aAD 783 (1053)
T TIGR01523 704 TGSQFDALSDEEVDDLKALCLVIARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGIAMGINGSDVAKDASD 783 (1053)
T ss_pred ehHHhhhcCHHHHHHHhhcCeEEEecCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCCccEecCCCccHHHHHhcC
Confidence 389999999999999999999999999999999999999999999999 89999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhc-cccccccHHHHHHHhhhhHHHHHHHhhhh
Q 002354 821 VVLMGNRLSQLLVALELSRLTMKTVKQNLWWAFGYNIVGIPIAA-GVLLP-VTGTMLTPSIAGALMGLSSIGVMANSLLL 898 (932)
Q Consensus 821 ~vl~~~~~~~i~~~i~~gR~~~~~i~~nl~~a~~~N~i~i~la~-~~~~~-~~g~~l~P~~aa~~m~~ssl~v~lnsl~l 898 (932)
+++.+|++..|.+++++||++++||++++.|.++.|+..+.+.+ +.++. ..|....|+.+..+.++.-+...+.++.|
T Consensus 784 ivl~dd~f~~I~~~i~~gR~~~~ni~k~i~y~l~~ni~~i~~~~~~~~~~~~~g~~~~Pl~~~qiL~inli~d~~palaL 863 (1053)
T TIGR01523 784 IVLSDDNFASILNAIEEGRRMFDNIMKFVLHLLAENVAEAILLIIGLAFRDENGKSVFPLSPVEILWCIMITSCFPAMGL 863 (1053)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCCCcCchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999997655443 22221 11322347777777787778888888887
Q ss_pred ccccccccccccCCCCCCCCCCccccccc
Q 002354 899 RLKFSSKQKASFQAPSSRVNSNVDSHQLM 927 (932)
Q Consensus 899 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 927 (932)
.+ .+++.+++++||++.+.+.++..+.
T Consensus 864 ~~--e~~~~~~m~~~Pr~~~~~l~~~~~~ 890 (1053)
T TIGR01523 864 GL--EKAAPDLMDRLPHDNEVGIFQKELI 890 (1053)
T ss_pred cc--CCCChhHHhcCCCCCCccccCHHHH
Confidence 65 4566678999999888888876543
No 21
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=100.00 E-value=2.7e-78 Score=753.65 Aligned_cols=588 Identities=21% Similarity=0.249 Sum_probs=467.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccCCCeEEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeeeEEEE
Q 002354 327 EEPIMLIAFVLLGKNLEQRAKIKATSDMTGLLGILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVR 406 (932)
Q Consensus 327 ~~~~~il~~~llg~~le~~~~~ka~~~l~~L~~~~p~~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll 406 (932)
..++++++++++...+..++++|+++.+++|.++.|.+++|+|+ |++++|+++||+|||+|.|++||+|||||+|+
T Consensus 37 ~~~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~~~~ViRd----g~~~~I~~~~Lv~GDiv~l~~Gd~IPaD~~ll 112 (917)
T TIGR01116 37 VEPFVILLILVANAIVGVWQERNAEKAIEALKEYESEHAKVLRD----GRWSVIKAKDLVPGDIVELAVGDKVPADIRVL 112 (917)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEC----CEEEEEEHHHCCCCCEEEECCCCEeeccEEEE
Confidence 35566677777888888888999999999999999999999987 58999999999999999999999999999999
Q ss_pred eee-eEEeccccccCCCceeecCC-------------CccccceeeecCcEEEEEEecCCcchHHHHHHHHHHhhcCCCh
Q 002354 407 AGR-STVDESSFTGEPLPVTKIPE-------------SEVAAGSINLNGTLTVEVRRPGGETAMGDIVRLVEEAQSREAP 472 (932)
Q Consensus 407 ~G~-~~VDES~LTGES~Pv~K~~g-------------~~V~aGt~v~~G~~~~~V~~tG~~T~~gki~~~v~~a~~~~~~ 472 (932)
+|+ +.||||+|||||.|+.|.++ +.+|+||.+.+|.++++|++||.+|.+|||.+++++++.+++|
T Consensus 113 ~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~n~l~~GT~v~~G~~~~~V~~tG~~T~~gki~~~~~~~~~~~t~ 192 (917)
T TIGR01116 113 SLKTLRVDQSILTGESVSVNKHTESVPDERAVNQDKKNMLFSGTLVVAGKARGVVVRTGMSTEIGKIRDEMRAAEQEDTP 192 (917)
T ss_pred EecceEEEcccccCCCCcccccccccCccccCcccccceeeeCCEEecceEEEEEEEeCCCCHHHHHHHHhhccCCCCCC
Confidence 995 89999999999999999875 7799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCc-ccchhccCCcHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHh
Q 002354 473 VQRLADQVSGHFTYGVIALSAATFVFWNLFGAHV-LPTAIQYGGPVSLALQLSCSVLVVACPCALGLATPTAMLVGTSLG 551 (932)
Q Consensus 473 lq~~~d~~~~~~~~~vl~la~~~~i~~~~~~~~~-~~~~~~~~~~~~~~l~~ai~vLvva~P~aL~la~p~a~~~~~~~~ 551 (932)
+|+.+++++.++.++++++++++|+++....... ....+. ..+...+..++++++++|||+|+++++++++.+..++
T Consensus 193 lq~~l~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~l~v~~iP~~Lp~~vti~l~~~~~~m 270 (917)
T TIGR01116 193 LQKKLDEFGELLSKVIGLICILVWVINIGHFNDPALGGGWI--QGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRKM 270 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhH--HHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHH
Confidence 9999999999998888888777776653321100 000000 1234456678899999999999999999999999999
Q ss_pred hhcCccccCchHHHhcccccEEEecCCCCcccCceEEEEEEecCCCC------CC-CCCCCCCC----------CCC---
Q 002354 552 ATRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLT------DP-NSKQNPIH----------PLS--- 611 (932)
Q Consensus 552 a~~gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~~~------~~-~~~~~~~~----------~~~--- 611 (932)
+++|+++|+++++|+||++|+||||||||||+|+|+|.+++..+..+ +. +....+.. ...
T Consensus 271 ~~~~ilvk~~~~iE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (917)
T TIGR01116 271 AKKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVCKVVALDPSSSSLNEFCVTGTTYAPEGGVIKDDGPVAGGQDAG 350 (917)
T ss_pred HHCCcEecCcHHHHhccCceEEEecCCccccCCeEEEEEEEecCCcccccceEEecCCccCCCccccccCCcccccchHH
Confidence 99999999999999999999999999999999999999998754221 00 00000000 000
Q ss_pred HHHHHHHHHHhcc-------------cCCCcHHHHHHHHHHhcCCccccc----------------c--CCCeE---Eec
Q 002354 612 ETEILKFAAGVES-------------NTVHPIGKAIVEAAEFSNCQNVKV----------------A--DGTFI---EEP 657 (932)
Q Consensus 612 ~~~ll~laa~~e~-------------~s~hPi~~Ai~~~a~~~~~~~~~~----------------~--~~~~~---~~~ 657 (932)
..+++..++.+.. ...+|.+.|+++++++.+.+.... + ..... +.+
T Consensus 351 ~~~l~~~~~lc~~~~~~~~~~~~~~~~~gdp~E~ALl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pF~s 430 (917)
T TIGR01116 351 LEELATIAALCNDSSLDFNERKGVYEKVGEATEAALKVLVEKMGLPATKNGVSSKRRPALGCNSVWNDKFKKLATLEFSR 430 (917)
T ss_pred HHHHHHHHHhcCCCeeeccccCCceeeccChhHHHHHHHHHHcCCCchhcccccccccccchhHHHHhhcceeeecccCh
Confidence 1223333322111 125899999999988766432110 0 00111 222
Q ss_pred CCeeEEEE-c--C--eEEEeecHHHHhhcCCCCc-------h--hh-------hHHHHHh-CCCeEEEEEE---------
Q 002354 658 GSGTVAII-E--D--RKVSVGTIDWLRSHGVDTS-------T--FQ-------EVEMEDL-MNQSLVYVGV--------- 706 (932)
Q Consensus 658 g~g~~~~i-~--~--~~~~~Gs~~~i~~~~~~~~-------~--~~-------~~~~~~~-~g~~~~~va~--------- 706 (932)
.+..+..+ + + ..++||+++.+.+.|.... + .+ ..+.++. +|.+++.+++
T Consensus 431 ~rK~msviv~~~~~~~~~~KGApe~il~~c~~~~~~~g~~~~l~~~~~~~i~~~~~~~a~~~GlRvl~~A~k~~~~~~~~ 510 (917)
T TIGR01116 431 DRKSMSVLCKPSTGNKLFVKGAPEGVLERCTHILNGDGRAVPLTDKMKNTILSVIKEMGTTKALRCLALAFKDIPDPREE 510 (917)
T ss_pred hhCeEEEEEeeCCcEEEEEcCChHHHHHhccceecCCCCeeeCCHHHHHHHHHHHHHHHhhcCCeEEEEEEEECCccccc
Confidence 23333332 2 2 3488999999999885311 0 01 1223456 7888888763
Q ss_pred --------------CCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC------------
Q 002354 707 --------------DNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK------------ 760 (932)
Q Consensus 707 --------------~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~------------ 760 (932)
|.+|+|+++++|++|++++++|++||++|++++|+|||+..+|.++|+++|+..
T Consensus 511 ~~~~~~~~~~~~e~~l~~lGl~~~~Dplr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~~~~~v~~~~~~g 590 (917)
T TIGR01116 511 DLLSDPANFEAIESDLTFIGVVGMLDPPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDEDVTFKSFTG 590 (917)
T ss_pred cccccchhhhhhcCCcEEEEEeeeeCCCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCCCCccccceeeeH
Confidence 347999999999999999999999999999999999999999999999999964
Q ss_pred -----------------CceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhhcCEEE
Q 002354 761 -----------------DKVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALASSHIGVAMGGGVGAASEVASVVL 823 (932)
Q Consensus 761 -----------------~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl 823 (932)
..+|+|++|+||.++|+.+|+.|+.|+|+|||.||+|||++|||||+||+|++.++++||+++
T Consensus 591 ~~l~~~~~~~~~~~~~~~~v~ar~~P~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdVGia~g~g~~~ak~aAD~vl 670 (917)
T TIGR01116 591 REFDEMGPAKQRAACRSAVLFSRVEPSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADIGIAMGSGTEVAKEASDMVL 670 (917)
T ss_pred HHHhhCCHHHHHHhhhcCeEEEecCHHHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCeeEECCCCcHHHHHhcCeEE
Confidence 149999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHhhhhHHHHHHHhhhhccccc
Q 002354 824 MGNRLSQLLVALELSRLTMKTVKQNLWWAFGYNIVGIPIAAGVLLPVTGTMLTPSIAGALMGLSSIGVMANSLLLRLKFS 903 (932)
Q Consensus 824 ~~~~~~~i~~~i~~gR~~~~~i~~nl~~a~~~N~i~i~la~~~~~~~~g~~l~P~~aa~~m~~ssl~v~lnsl~l~~~~~ 903 (932)
.+|++..|.+++++||++++|+++++.|.++.|+..+.+.+... ++| .-.|+-+..+..++-+...+.++.|.+..
T Consensus 671 ~dd~f~~i~~~i~~GR~~~~ni~k~i~~~l~~ni~~~~~~~~~~--~~~-~~~pl~~~qll~inli~d~lp~~~l~~~~- 746 (917)
T TIGR01116 671 ADDNFATIVAAVEEGRAIYNNMKQFIRYMISSNIGEVVCIFLTA--ALG-IPEGLIPVQLLWVNLVTDGLPATALGFNP- 746 (917)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH--HHc-CCchHHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 99999999999999999999999999999999997555443221 233 23577777788888888888888886543
Q ss_pred cccccccCCCCCCCCCCccccc
Q 002354 904 SKQKASFQAPSSRVNSNVDSHQ 925 (932)
Q Consensus 904 ~~~~~~~k~~~~~~~~~~~~~~ 925 (932)
+..+.+++||.+.+...++-.
T Consensus 747 -~~~~~m~~pP~~~~~~l~~~~ 767 (917)
T TIGR01116 747 -PDKDIMWKPPRRPDEPLITGW 767 (917)
T ss_pred -cchhHhcCCCCCCCCCcccHH
Confidence 336668888887766666543
No 22
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-80 Score=705.47 Aligned_cols=556 Identities=22% Similarity=0.264 Sum_probs=456.4
Q ss_pred CCCeEEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeeeEEEEee-eeEEeccccccCCCceeecC--CCcccccee
Q 002354 361 LPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAG-RSTVDESSFTGEPLPVTKIP--ESEVAAGSI 437 (932)
Q Consensus 361 ~p~~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll~G-~~~VDES~LTGES~Pv~K~~--g~~V~aGt~ 437 (932)
...+..|+|+ |+.++|++.||++|||+.++.||.|||||++++| ++.+|||++||||.+++|.. +.++++||.
T Consensus 218 ~~~k~~ViR~----G~r~~isI~diVVGDIv~lk~GDqvPADGvli~gn~L~iDESSlTGESd~v~k~~~~dPfLlSGTk 293 (1034)
T KOG0204|consen 218 RNIKFQVIRG----GRRQQISIYDLVVGDIVQLKIGDQVPADGVLIQGNSLKIDESSLTGESDHVQKSLDKDPFLLSGTK 293 (1034)
T ss_pred hceEEEEEEC----CEEEEEEEeeeeeccEEEeecCCccccceEEEeccceeEecccccCCCcceeccCCCCCeEeecce
Confidence 3467888987 6999999999999999999999999999999999 58999999999999999976 668999999
Q ss_pred eecCcEEEEEEecCCcchHHHHHHHHHHhhcCCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcc---Cccc------
Q 002354 438 NLNGTLTVEVRRPGGETAMGDIVRLVEEAQSREAPVQRLADQVSGHFTYGVIALSAATFVFWNLFGA---HVLP------ 508 (932)
Q Consensus 438 v~~G~~~~~V~~tG~~T~~gki~~~v~~a~~~~~~lq~~~d~~~~~~~~~vl~la~~~~i~~~~~~~---~~~~------ 508 (932)
+.+|++++.|+.+|.+|..|+++..+.+...+++|+|-.+++++.....+.+.+++++|++...... ....
T Consensus 294 v~eGsgkMlVTaVGmnt~wG~~m~~l~~~~~e~tpLQ~kL~~lA~~Igk~Gl~~A~~~~~VL~~r~~~~~~~~~~~~~~~ 373 (1034)
T KOG0204|consen 294 VMEGSGKMLVTAVGMNTQWGIIMTLLGAGGEEETPLQVKLNGLATQIGKIGLLFAALTFIVLVIRFFIGKTKIEGGTGTT 373 (1034)
T ss_pred eecCcceEEEEEeeecchHhhHHHhhhcCCCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeeecCCCCCcc
Confidence 9999999999999999999999999999988999999999999999888888888888776543321 1000
Q ss_pred chhccCCcHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhhhcCccccCchHHHhcccccEEEecCCCCcccCceEE
Q 002354 509 TAIQYGGPVSLALQLSCSVLVVACPCALGLATPTAMLVGTSLGATRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVV 588 (932)
Q Consensus 509 ~~~~~~~~~~~~l~~ai~vLvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~~v 588 (932)
..-.....+.+.|..++.++++++|++||+|++++++.++++|.+.+.|+|.++++|++|..++||.|||||||.|+|+|
T Consensus 374 ~~~~~~~~~v~~f~i~VTilVVAVPEGLPLAVTLsLAys~kkMmkD~~LVRhL~ACETMGsAT~ICsDKTGTLT~N~MtV 453 (1034)
T KOG0204|consen 374 WSDEYIQEFVKFFIIAVTILVVAVPEGLPLAVTLSLAYSMKKMMKDNNLVRHLDACETMGSATAICSDKTGTLTTNRMTV 453 (1034)
T ss_pred ccHHHHHHHHHHhhheeEEEEEECCCCccHHHHHHHHHHHHHHhcchhHHHHhHHHhhcCCceEEEecCcCceEeeeEEE
Confidence 00001133566777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHhc-----------------ccCCCcHHHHHHHHHHhcCCccccccCC
Q 002354 589 TKVVTSGSLTDPNSKQNPIHPLSETEILKFAAGVE-----------------SNTVHPIGKAIVEAAEFSNCQNVKVADG 651 (932)
Q Consensus 589 ~~i~~~~~~~~~~~~~~~~~~~~~~~ll~laa~~e-----------------~~s~hPi~~Ai~~~a~~~~~~~~~~~~~ 651 (932)
.+.+..++.++.+.+.. ..+++.-.--+..++. .....|.++||+.+....|.+....+.+
T Consensus 454 V~~~~~~~~~k~~~~~~--~~l~~~~~~ll~~gI~~Nt~g~v~~~~~~g~~~~~~GspTE~AlL~f~~~LG~~~~~~R~e 531 (1034)
T KOG0204|consen 454 VQSYIGSEHYKVNSPKS--SNLPPSLLDLLLQGIAQNTTGSVVKPEKGGEQPEQLGSPTECALLGFGLKLGMDFQDVRPE 531 (1034)
T ss_pred EeeeeccccccccCccc--ccCCHHHHHHHHHHHhhcCCCeEEecCCCCcCccccCCHHHHHHHHHHHHhCcchHhhcch
Confidence 99999876666444321 2333322111222221 2245899999999998877654333322
Q ss_pred C--eEEec------CCeeEEEE-cCe--EEEeecHHHHhhcCCCCch-------hh---------hHHHHHhCCCeEEEE
Q 002354 652 T--FIEEP------GSGTVAII-EDR--KVSVGTIDWLRSHGVDTST-------FQ---------EVEMEDLMNQSLVYV 704 (932)
Q Consensus 652 ~--~~~~~------g~g~~~~i-~~~--~~~~Gs~~~i~~~~~~~~~-------~~---------~~~~~~~~g~~~~~v 704 (932)
. .+..| ..|+.... ++. .++||+.|.+...|..+.. +. ..+..+.++.+++++
T Consensus 532 ~~v~kv~~FNS~kK~~gvvi~~~~~~~y~~~KGAsEiVL~~C~~~~~~~g~~~~~~e~~~~~~~~~Ie~mA~~~LRti~l 611 (1034)
T KOG0204|consen 532 EKVVKVYPFNSVKKRMGVVIKLPDGGHYVHWKGASEIVLKSCEYYIDSNGELVPFNEDDRKSFKDVIEPMASEGLRTICL 611 (1034)
T ss_pred hheeEEeccCcccceeeEEEEcCCCCeEEEEcChHHHHHHhhhheECCCCCEeeCCHHHHHHHHHHHHHHHHhhhheeeE
Confidence 1 22222 12333332 222 6899999999998864311 11 123356678888888
Q ss_pred EE---------------------CCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC--
Q 002354 705 GV---------------------DNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD-- 761 (932)
Q Consensus 705 a~---------------------~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~-- 761 (932)
++ +.+++|+++++||+||+++++|+.|+++||+|.|+||||-.||++||.+|||..+
T Consensus 612 Ay~df~~~~~~~~~~~~~~~~~~~lt~laivGIkDPvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eCGILt~~~ 691 (1034)
T KOG0204|consen 612 AYRDFVAGPDEEPSWDNEELPEGGLTLLAIVGIKDPVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIARECGILTPGG 691 (1034)
T ss_pred EeeccccCCCCCCCccccccCCCCeEEEEEeeccCCCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHcccccCCC
Confidence 86 3479999999999999999999999999999999999999999999999999432
Q ss_pred -------------------------ceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHHHHhCCeeEEec-CchHHH
Q 002354 762 -------------------------KVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALASSHIGVAMG-GGVGAA 815 (932)
Q Consensus 762 -------------------------~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~vgIa~~-~~~~~a 815 (932)
+|+||-+|.||..+|+.|++.|++|+..|||+||+|||+.||||.||| .|++.|
T Consensus 692 d~~~lEG~eFr~~s~ee~~~i~pkl~VlARSSP~DK~lLVk~L~~~g~VVAVTGDGTNDaPALkeADVGlAMGIaGTeVA 771 (1034)
T KOG0204|consen 692 DFLALEGKEFRELSQEERDKIWPKLRVLARSSPNDKHLLVKGLIKQGEVVAVTGDGTNDAPALKEADVGLAMGIAGTEVA 771 (1034)
T ss_pred ccceecchhhhhcCHHHHHhhhhhheeeecCCCchHHHHHHHHHhcCcEEEEecCCCCCchhhhhcccchhccccchhhh
Confidence 699999999999999999999999999999999999999999999999 999999
Q ss_pred HhhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHhhhhHHHHHHHh
Q 002354 816 SEVASVVLMGNRLSQLLVALELSRLTMKTVKQNLWWAFGYNIVGIPIAAGVLLPVTGTMLTPSIAGALMGLSSIGVMANS 895 (932)
Q Consensus 816 ~~~ad~vl~~~~~~~i~~~i~~gR~~~~~i~~nl~~a~~~N~i~i~la~~~~~~~~g~~l~P~~aa~~m~~ssl~v~lns 895 (932)
||+|||++++|||+.|.++++|||+.|.+|+|+++|+++.|++++.+++-.- ...| =+|+-|..+.+..-++.+|-|
T Consensus 772 KEaSDIIi~DDNFssIVk~v~WGR~VY~nIqKFiQFQLTVNVvAliv~fv~A-~~~~--dsPLtAVQlLWVNLIMDTLgA 848 (1034)
T KOG0204|consen 772 KEASDIIILDDNFSSIVKAVKWGRNVYDNIQKFLQFQLTVNVVALIVNFVSA-CATG--DSPLTAVQLLWVNLIMDTLGA 848 (1034)
T ss_pred hhhCCeEEEcCchHHHHHHHHhhhHHHHHHHHhheeEEEEEEEeehhhhhhh-hhcC--CccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887775221 1234 379999999999999999999
Q ss_pred hhhccccccccccccCCCCCCCCCCccccccc
Q 002354 896 LLLRLKFSSKQKASFQAPSSRVNSNVDSHQLM 927 (932)
Q Consensus 896 l~l~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 927 (932)
|.|+-+ ||..+ ++|++|--.+-...|..|+
T Consensus 849 LALATe-pPt~~-Lm~RkP~GR~~~LIt~tMw 878 (1034)
T KOG0204|consen 849 LALATE-PPTDE-LMKRKPVGRTKPLITRTMW 878 (1034)
T ss_pred HHhccC-CCChH-HhcCCCCCCCCcchHHHHH
Confidence 999765 33333 6788887777777776665
No 23
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=100.00 E-value=1.1e-78 Score=716.52 Aligned_cols=477 Identities=34% Similarity=0.474 Sum_probs=432.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhc--cCCCeEEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeeeEEEEeeee
Q 002354 333 IAFVLLGKNLEQRAKIKATSDMTGLLG--ILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAGRS 410 (932)
Q Consensus 333 l~~~llg~~le~~~~~ka~~~l~~L~~--~~p~~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll~G~~ 410 (932)
+++++++.+++.+.++++++.+++|.+ +.|++++|+|+ | +++|++++|+|||+|.+++||+|||||+|++|++
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~----g-~~~V~~~~l~~GDiv~v~~G~~iP~Dg~vl~g~~ 77 (499)
T TIGR01494 3 LILVLLFALVEVAAKRAAEDAIRSLKDLLVNPETVTVLRN----G-WKEIPASDLVPGDIVLVKSGEIVPADGVLLSGSC 77 (499)
T ss_pred EEhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEC----C-eEEEEHHHCCCCCEEEECCCCEeeeeEEEEEccE
Confidence 456788999999999999999999998 89999999986 5 7899999999999999999999999999999999
Q ss_pred EEeccccccCCCceeecCCCccccceeeecCcEEEEEEecCCcchHHHHHHHHHHhhcCCChHHHHHHHHH-hhHHHHHH
Q 002354 411 TVDESSFTGEPLPVTKIPESEVAAGSINLNGTLTVEVRRPGGETAMGDIVRLVEEAQSREAPVQRLADQVS-GHFTYGVI 489 (932)
Q Consensus 411 ~VDES~LTGES~Pv~K~~g~~V~aGt~v~~G~~~~~V~~tG~~T~~gki~~~v~~a~~~~~~lq~~~d~~~-~~~~~~vl 489 (932)
.||||+|||||.|+.|.+||.+++||.+.+|+++++|+++|.+|..+++...+++++..++++++..++++ .+|+++++
T Consensus 78 ~vdes~LTGEs~pv~k~~g~~v~~gs~~~~G~~~~~v~~~~~~s~~~~i~~~v~~~~~~k~~~~~~~~~~~~~~~~~~~~ 157 (499)
T TIGR01494 78 FVDESNLTGESVPVLKTAGDAVFAGTYVFNGTLIVVVSATGPNTFGGKIAVVVYTGFETKTPLQPKLDRLSDIIFILFVL 157 (499)
T ss_pred EEEcccccCCCCCeeeccCCccccCcEEeccEEEEEEEEeccccHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888999999999999 89999999
Q ss_pred HHHHHHHHHHHhhccCcccchhccCCcHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhhhcCccccCchHHHhccc
Q 002354 490 ALSAATFVFWNLFGAHVLPTAIQYGGPVSLALQLSCSVLVVACPCALGLATPTAMLVGTSLGATRGLLLRGGNILEKFAM 569 (932)
Q Consensus 490 ~la~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ai~vLvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~ 569 (932)
+++++++++|++.... ..+|..++.+++++++++|||+|++++|+++..+..+++++|+++|+++++|++++
T Consensus 158 ~la~~~~~~~~~~~~~--------~~~~~~~~~~~~~vl~~~~P~aL~~~~~~~~~~~~~~~~~~gilvk~~~~lE~l~~ 229 (499)
T TIGR01494 158 LIALAVFLFWAIGLWD--------PNSIFKIFLRALILLVIAIPIALPLAVTIALAVGDARLAKKGIVVRSLNALEELGK 229 (499)
T ss_pred HHHHHHHHHHHHHHcc--------cccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHCCcEEechhhhhhccC
Confidence 9999999888654321 01367889999999999999999999999999999999999999999999999999
Q ss_pred ccEEEecCCCCcccCceEEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCCcccccc
Q 002354 570 VNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLSETEILKFAAGVESNTVHPIGKAIVEAAEFSNCQNVKVA 649 (932)
Q Consensus 570 v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ll~laa~~e~~s~hPi~~Ai~~~a~~~~~~~~~~~ 649 (932)
+|++|||||||||+|+|++.++++.+ . |..+.||+++|++++++.....
T Consensus 230 v~~i~fDKTGTLT~~~~~v~~~~~~~-------------~-------------~~~s~hp~~~ai~~~~~~~~~~----- 278 (499)
T TIGR01494 230 VDYICSDKTGTLTKNEMSFKKVSVLG-------------G-------------EYLSGHPDERALVKSAKWKILN----- 278 (499)
T ss_pred CcEEEeeCCCccccCceEEEEEEecC-------------C-------------CcCCCChHHHHHHHHhhhcCcc-----
Confidence 99999999999999999999998641 1 4678999999999998754321
Q ss_pred CCCeEEecCCeeEEEEcC--eEEEeecHHHHhhcCCCCchhhhHHHHHhCCCeEEEEEECCEEEEEEEecccccHHHHHH
Q 002354 650 DGTFIEEPGSGTVAIIED--RKVSVGTIDWLRSHGVDTSTFQEVEMEDLMNQSLVYVGVDNMLAGLIYVEDRIRDDAAHV 727 (932)
Q Consensus 650 ~~~~~~~~g~g~~~~i~~--~~~~~Gs~~~i~~~~~~~~~~~~~~~~~~~g~~~~~va~~~~~lG~i~l~D~lr~~~~~~ 727 (932)
..+|...+ +|+...+++ ..+.+|+++++.+.|... .+..+....+|.++++++++++++|++.++|++|++++++
T Consensus 279 ~~~f~~~~-~~~~~~~~~~~~~~~~G~~~~i~~~~~~~--~~~~~~~~~~g~~~~~~a~~~~~~g~i~l~d~lr~~~~~~ 355 (499)
T TIGR01494 279 VFEFSSVR-KRMSVIVRGPDGTYVKGAPEFVLSRVKDL--EEKVKELAQSGLRVLAVASKETLLGLLGLEDPLRDDAKET 355 (499)
T ss_pred eeccCCCC-ceEEEEEecCCcEEEeCCHHHHHHhhHHH--HHHHHHHHhCCCEEEEEEECCeEEEEEEecCCCchhHHHH
Confidence 23455555 677777764 679999999998876421 1122234567899999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHHHHhCCeeEE
Q 002354 728 VNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALASSHIGVA 807 (932)
Q Consensus 728 i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~vgIa 807 (932)
|+.|+++|++++|+|||++.++..+|+++|+ +++++|++|.++|+.+|++|+.|+|+|||.||++||++|||||+
T Consensus 356 i~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi-----~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~Advgia 430 (499)
T TIGR01494 356 ISELREAGIRVIMLTGDNVLTAKAIAKELGI-----FARVTPEEKAALVEALQKKGRVVAMTGDGVNDAPALKKADVGIA 430 (499)
T ss_pred HHHHHHCCCeEEEEcCCCHHHHHHHHHHcCc-----eeccCHHHHHHHHHHHHHCCCEEEEECCChhhHHHHHhCCCccc
Confidence 9999999999999999999999999999997 79999999999999999999999999999999999999999999
Q ss_pred ecCchHHHHhhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002354 808 MGGGVGAASEVASVVLMGNRLSQLLVALELSRLTMKTVKQNLWWAFGYNIVGIPIAAGV 866 (932)
Q Consensus 808 ~~~~~~~a~~~ad~vl~~~~~~~i~~~i~~gR~~~~~i~~nl~~a~~~N~i~i~la~~~ 866 (932)
|+ ++++||++++++++..+..++++||+++++++||+.|++.||++.+|+++++
T Consensus 431 ~~-----a~~~adivl~~~~l~~i~~~~~~~r~~~~~i~~~~~~~~~~n~~~~~~a~~~ 484 (499)
T TIGR01494 431 MG-----AKAAADIVLLDDNLSTIVDALKEGRKTFSTIKSNIFWAIAYNLILIPLAALL 484 (499)
T ss_pred cc-----hHHhCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97 6899999999999999999999999999999999999999999999999753
No 24
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=100.00 E-value=2.5e-76 Score=745.18 Aligned_cols=567 Identities=19% Similarity=0.231 Sum_probs=440.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccCCCeEEEEEecCCCCcEEEEeCCCccCCCEEEEc--CCCEEee
Q 002354 324 AFFEEPIMLIAFVLLGKNLEQRAKIKATSDMTGLLGILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVL--PGDRIPA 401 (932)
Q Consensus 324 ~yf~~~~~il~~~llg~~le~~~~~ka~~~l~~L~~~~p~~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~--~Ge~IPa 401 (932)
.||..++++++++++...+..++++|+.+.++++.. .|..++|+|+ |++++|+++||+|||+|.|+ +|++|||
T Consensus 191 ~~~~~~~~i~~i~~~~~~~~~~~~~k~~~~L~~~~~-~~~~v~V~Rd----g~~~~I~s~eLvpGDiv~l~~~~g~~iPa 265 (1054)
T TIGR01657 191 EYYYYSLCIVFMSSTSISLSVYQIRKQMQRLRDMVH-KPQSVIVIRN----GKWVTIASDELVPGDIVSIPRPEEKTMPC 265 (1054)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCeeEEEEEC----CEEEEEEcccCCCCCEEEEecCCCCEecc
Confidence 355567777888888999999999999888888755 4789999987 58999999999999999999 9999999
Q ss_pred eEEEEeeeeEEeccccccCCCceeecCC------------------Cccccceeeec-------CcEEEEEEecCCcchH
Q 002354 402 DGVVRAGRSTVDESSFTGEPLPVTKIPE------------------SEVAAGSINLN-------GTLTVEVRRPGGETAM 456 (932)
Q Consensus 402 Dgvll~G~~~VDES~LTGES~Pv~K~~g------------------~~V~aGt~v~~-------G~~~~~V~~tG~~T~~ 456 (932)
||+|++|++.||||+|||||.|+.|.+. +.+|+||.+.+ |.+.++|++||.+|..
T Consensus 266 D~~ll~g~~~VdES~LTGES~Pv~K~~~~~~~~~~~~~~~~~~~~~~~lf~GT~v~~~~~~~g~g~~~~vV~~TG~~T~~ 345 (1054)
T TIGR01657 266 DSVLLSGSCIVNESMLTGESVPVLKFPIPDNGDDDEDLFLYETSKKHVLFGGTKILQIRPYPGDTGCLAIVVRTGFSTSK 345 (1054)
T ss_pred eEEEEeCcEEEecccccCCccceecccCCccccccccccccccccceEEEcCCEEEEEecCCCCCcEEEEEEeCCccccc
Confidence 9999999999999999999999999762 13999999984 7899999999999999
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcccchhccCCcHHHHHHHHHHHHHHHhhhcc
Q 002354 457 GDIVRLVEEAQSREAPVQRLADQVSGHFTYGVIALSAATFVFWNLFGAHVLPTAIQYGGPVSLALQLSCSVLVVACPCAL 536 (932)
Q Consensus 457 gki~~~v~~a~~~~~~lq~~~d~~~~~~~~~vl~la~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ai~vLvva~P~aL 536 (932)
|++++++.+++..++++++.+.++...+. +++++.++++++.+ +..+.++...+.++++++++++|++|
T Consensus 346 G~i~~~i~~~~~~~~~~~~~~~~~~~~l~----~~a~i~~i~~~~~~-------~~~~~~~~~~~l~~l~iiv~~vP~~L 414 (1054)
T TIGR01657 346 GQLVRSILYPKPRVFKFYKDSFKFILFLA----VLALIGFIYTIIEL-------IKDGRPLGKIILRSLDIITIVVPPAL 414 (1054)
T ss_pred hHHHHHhhCCCCCCCchHHHHHHHHHHHH----HHHHHHHHHHHHHH-------HHcCCcHHHHHHHHHHHHHhhcCchH
Confidence 99999999988888999888777655443 33333333222211 11234678889999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhcCccccCchHHHhcccccEEEecCCCCcccCceEEEEEEecCCCCCCCCCCCCCCCCCHHHHH
Q 002354 537 GLATPTAMLVGTSLGATRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLSETEIL 616 (932)
Q Consensus 537 ~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ll 616 (932)
++++++++..++.+++++||++|++.++|.+|++|++|||||||||+|+|.|.+++..+...................++
T Consensus 415 P~~~ti~l~~~~~rL~k~~il~~~~~~ie~lG~v~vicfDKTGTLTen~m~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (1054)
T TIGR01657 415 PAELSIGINNSLARLKKKGIFCTSPFRINFAGKIDVCCFDKTGTLTEDGLDLRGVQGLSGNQEFLKIVTEDSSLKPSITH 494 (1054)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEcCcccceecceeeEEEEcCCCCCccCCeeEEeEecccCccccccccccccccCchHHH
Confidence 99999999999999999999999999999999999999999999999999999998754321110000000001112222
Q ss_pred HHHHHhc-------ccCCCcHHHHHHHHHHhcCCc--c--cccc----------C------CCeEEecCCeeEEEE---c
Q 002354 617 KFAAGVE-------SNTVHPIGKAIVEAAEFSNCQ--N--VKVA----------D------GTFIEEPGSGTVAII---E 666 (932)
Q Consensus 617 ~laa~~e-------~~s~hPi~~Ai~~~a~~~~~~--~--~~~~----------~------~~~~~~~g~g~~~~i---~ 666 (932)
...+.+. ....+|++.|++++....-.. . .... . ..+.+.+.+..+.++ .
T Consensus 495 ~~~a~C~~~~~~~~~~~Gdp~E~al~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~il~~~pF~S~~krMsvvv~~~ 574 (1054)
T TIGR01657 495 KALATCHSLTKLEGKLVGDPLDKKMFEATGWTLEEDDESAEPTSILAVVRTDDPPQELSIIRRFQFSSALQRMSVIVSTN 574 (1054)
T ss_pred HHHHhCCeeEEECCEEecCHHHHHHHHhCCCEEECCCCcccccccccceeccCCCceEEEEEEEeecCCCCEEEEEEEEc
Confidence 2222211 234799999999986432100 0 0000 0 112222333222222 2
Q ss_pred --Ce--EEEeecHHHHhhcCCCCc---h-hhhHHHHHhCCCeEEEEEE---------------------CCEEEEEEEec
Q 002354 667 --DR--KVSVGTIDWLRSHGVDTS---T-FQEVEMEDLMNQSLVYVGV---------------------DNMLAGLIYVE 717 (932)
Q Consensus 667 --~~--~~~~Gs~~~i~~~~~~~~---~-~~~~~~~~~~g~~~~~va~---------------------~~~~lG~i~l~ 717 (932)
++ .++||+||.+.+.|.... . .+..+.++.+|.+++.+++ |++|+|+++|+
T Consensus 575 ~~~~~~~~~KGApE~Il~~c~~~~~p~~~~~~~~~~a~~G~RVLalA~k~l~~~~~~~~~~~~r~~~E~~L~flGli~~~ 654 (1054)
T TIGR01657 575 DERSPDAFVKGAPETIQSLCSPETVPSDYQEVLKSYTREGYRVLALAYKELPKLTLQKAQDLSRDAVESNLTFLGFIVFE 654 (1054)
T ss_pred CCCeEEEEEECCHHHHHHHcCCcCCChhHHHHHHHHHhcCCEEEEEEEeecCccchhhhhhccHHHHhcCceEEEEEEEe
Confidence 22 589999999999987422 1 1233456788999998875 45799999999
Q ss_pred ccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC------------------------------------
Q 002354 718 DRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD------------------------------------ 761 (932)
Q Consensus 718 D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~------------------------------------ 761 (932)
|++||+++++|+.|+++||+++|+|||+..||.++|+++||..+
T Consensus 655 d~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1054)
T TIGR01657 655 NPLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIVNPSNTLILAEAEPPESGKPNQIKFEVIDSIPFASTQVE 734 (1054)
T ss_pred cCCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCceEEEeecccccCCCCceEEEEecCcccccccccc
Confidence 99999999999999999999999999999999999999999310
Q ss_pred ---------------------------------------------ceecccChhhHHHHHHHHhhCCCEEEEEcCCcccH
Q 002354 762 ---------------------------------------------KVLSGVKPNEKKRFINELQNDENVVAMVGDGINDA 796 (932)
Q Consensus 762 ---------------------------------------------~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~ 796 (932)
.||||++|+||.++|+.||+.|+.|+|+|||+||+
T Consensus 735 ~~~~~~~~~~~~~~~~~~~~~itG~~l~~l~~~~~~~l~~~~~~~~VfAR~sP~qK~~iV~~lq~~g~~V~m~GDG~ND~ 814 (1054)
T TIGR01657 735 IPYPLGQDSVEDLLASRYHLAMSGKAFAVLQAHSPELLLRLLSHTTVFARMAPDQKETLVELLQKLDYTVGMCGDGANDC 814 (1054)
T ss_pred ccCcccccchhhhcccceEEEEEcHHHHHHHHhhHHHHHHHHhcCeEEEecCHHHHHHHHHHHHhCCCeEEEEeCChHHH
Confidence 48999999999999999999999999999999999
Q ss_pred HHHHhCCeeEEecCchHHHHhhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 002354 797 AALASSHIGVAMGGGVGAASEVASVVLMGNRLSQLLVALELSRLTMKTVKQNLWWAFGYNIVGIPIAAGVLLPVTGTMLT 876 (932)
Q Consensus 797 ~al~~A~vgIa~~~~~~~a~~~ad~vl~~~~~~~i~~~i~~gR~~~~~i~~nl~~a~~~N~i~i~la~~~~~~~~g~~l~ 876 (932)
+||++|||||||+++ | |..+||+++.+++++.|+++|++||+++.++++.+.|.+.|+++.... ...++ ..|..++
T Consensus 815 ~ALK~AdVGIam~~~-d-as~AA~f~l~~~~~~~I~~~I~eGR~~l~~~~~~~~~~~~~~~~~~~~-~~~l~-~~~~~l~ 890 (1054)
T TIGR01657 815 GALKQADVGISLSEA-E-ASVAAPFTSKLASISCVPNVIREGRCALVTSFQMFKYMALYSLIQFYS-VSILY-LIGSNLG 890 (1054)
T ss_pred HHHHhcCcceeeccc-c-ceeecccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HccCcCc
Confidence 999999999999865 3 458999999999999999999999999999999999999999875432 22222 2343344
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhccccccccccccCCCCC
Q 002354 877 PSIAGALMGLSSIGVMANSLLLRLKFSSKQKASFQAPSS 915 (932)
Q Consensus 877 P~~aa~~m~~ssl~v~lnsl~l~~~~~~~~~~~~k~~~~ 915 (932)
| ..++.+..++....++.|.+..|. .+++++||.
T Consensus 891 ~---~Q~l~i~li~~~~~~l~l~~~~p~--~~l~~~~P~ 924 (1054)
T TIGR01657 891 D---GQFLTIDLLLIFPVALLMSRNKPL--KKLSKERPP 924 (1054)
T ss_pred c---HHHHHHHHHHHHHHHHHHHcCCch--hhcCCCCCC
Confidence 4 466777778888888877655433 345666663
No 25
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=100.00 E-value=8.8e-66 Score=651.30 Aligned_cols=616 Identities=16% Similarity=0.133 Sum_probs=456.3
Q ss_pred ccHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 002354 277 PGFQLILDGVKSLFKGAPNMNTLVGLGAVSSFTVSSLAALVPKLGWKAFFEEPIMLIAFVLLGKNLEQRAKIKATSDMTG 356 (932)
Q Consensus 277 ~g~~~~~~a~~~l~~~~~nmd~Li~l~~~~a~~~s~~~~~~~~~~~~~yf~~~~~il~~~llg~~le~~~~~ka~~~l~~ 356 (932)
..|.|++..+...+++..|+.+|+...+.....+| + .....++.+.++++++..+++++|++.++|+++.++
T Consensus 12 ~~~~flp~~l~~qf~~~~N~yfl~i~ilq~ip~~s------~-~~~~t~~~pL~~v~~~~~~~~~~ed~~r~~~d~~~n- 83 (1057)
T TIGR01652 12 TVLTFLPKNLFEQFKRFANLYFLVVALLQQVPILS------P-TYRGTSIVPLAFVLIVTAIKEAIEDIRRRRRDKEVN- 83 (1057)
T ss_pred cchhhhHHHHHHHHHHHhhHHHHHHHHHHcCCCcC------C-CCccHhHHhHHHHHHHHHHHHHHHHHHHHHhHHHHh-
Confidence 34566777777777788888888754433221111 1 123456667778888889999999999999987654
Q ss_pred hhccCCCeEEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeeeEEEEe-----eeeEEeccccccCCCceeecCC--
Q 002354 357 LLGILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRA-----GRSTVDESSFTGEPLPVTKIPE-- 429 (932)
Q Consensus 357 L~~~~p~~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll~-----G~~~VDES~LTGES~Pv~K~~g-- 429 (932)
++.++|+|++ |+++++++++|+|||+|.|++||+||||++|++ |.+.||||.||||+.|+.|.+.
T Consensus 84 -----~~~~~v~~~~---~~~~~i~~~~l~~GDiv~l~~g~~iPaD~~ll~ss~~~g~~~v~~s~l~GEs~~~~k~~~~~ 155 (1057)
T TIGR01652 84 -----NRLTEVLEGH---GQFVEIPWKDLRVGDIVKVKKDERIPADLLLLSSSEPDGVCYVETANLDGETNLKLRQALEE 155 (1057)
T ss_pred -----CcEEEEECCC---CcEEEeeeecccCCCEEEEcCCCcccceEEEEeccCCCceEEEEeeccCCeecceEeecchh
Confidence 5789998863 478999999999999999999999999999996 7799999999999999999641
Q ss_pred ----------------------------------------------Cccccceeeec-CcEEEEEEecCCcchHHHHHHH
Q 002354 430 ----------------------------------------------SEVAAGSINLN-GTLTVEVRRPGGETAMGDIVRL 462 (932)
Q Consensus 430 ----------------------------------------------~~V~aGt~v~~-G~~~~~V~~tG~~T~~gki~~~ 462 (932)
+.+++||.+.+ |.+.+.|++||.+|.+++.
T Consensus 156 ~~~~~~~~~~~~~~~~i~~~~p~~~l~~F~G~~~~~~~~~~~l~~~N~l~rGs~l~nt~~~~gvVvyTG~~Tk~~~n--- 232 (1057)
T TIGR01652 156 TQKMLDEDDIKNFSGEIECEQPNASLYSFQGNMTINGDRQYPLSPDNILLRGCTLRNTDWVIGVVVYTGHDTKLMRN--- 232 (1057)
T ss_pred hhccCChhhHhhceEEEEEcCCCCcceEEEEEEEECCCCcccCCHHHhHhcCCEecCCCeEEEEEEEEchhhhhhhc---
Confidence 34788999998 8999999999999987664
Q ss_pred HHHhhcCCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCccc-chhcc--------CCcHHHHHHHHHHHHHHHhh
Q 002354 463 VEEAQSREAPVQRLADQVSGHFTYGVIALSAATFVFWNLFGAHVLP-TAIQY--------GGPVSLALQLSCSVLVVACP 533 (932)
Q Consensus 463 v~~a~~~~~~lq~~~d~~~~~~~~~vl~la~~~~i~~~~~~~~~~~-~~~~~--------~~~~~~~l~~ai~vLvva~P 533 (932)
....+.+++++++.++++..++..+.++++++.+++..++...... .++.. ...+...+..++.++...+|
T Consensus 233 ~~~~~~k~s~le~~ln~~~~~l~~~~i~l~~i~~i~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~L~~~~IP 312 (1057)
T TIGR01652 233 ATQAPSKRSRLEKELNFLIIILFCLLFVLCLISSVGAGIWNDAHGKDLWYIRLDVSERNAAANGFFSFLTFLILFSSLIP 312 (1057)
T ss_pred CCCCcccccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHheecccCCCccceecCcccccchhHHHHHHHHHHHHHhhhcc
Confidence 3445667899999999998887777777777776654333211000 01100 01233466778888889999
Q ss_pred hcchhhHHHHHHHHH------HHhhhc----CccccCchHHHhcccccEEEecCCCCcccCceEEEEEEecCCCCCCCCC
Q 002354 534 CALGLATPTAMLVGT------SLGATR----GLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSK 603 (932)
Q Consensus 534 ~aL~la~p~a~~~~~------~~~a~~----gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~ 603 (932)
.+|++.+.++...+. .++.++ ++++|+.+.+|+||+|++||+|||||||+|+|++++++..+..|.....
T Consensus 313 isL~v~l~l~~~~~~~~i~~D~~m~~~~~~~~~~vr~~~~~E~LG~v~~I~sDKTGTLT~N~M~~~~~~i~g~~y~~~~~ 392 (1057)
T TIGR01652 313 ISLYVSLELVKSVQAYFINSDLQMYHEKTDTPASVRTSNLNEELGQVEYIFSDKTGTLTQNIMEFKKCSIAGVSYGDGFT 392 (1057)
T ss_pred eeeeehHHHHHHHHHHHHhhhhhhhccccCCcceeecCCChHHhcCeeEEEEcCCCceeeeeEEEEEEEECCEEecCCcc
Confidence 999999999988888 666653 5999999999999999999999999999999999999887654432100
Q ss_pred --------C------------CC-----------------CCCCC--HHHHHHHHHHh-----c---c-------cCCCc
Q 002354 604 --------Q------------NP-----------------IHPLS--ETEILKFAAGV-----E---S-------NTVHP 629 (932)
Q Consensus 604 --------~------------~~-----------------~~~~~--~~~ll~laa~~-----e---~-------~s~hP 629 (932)
. .. .+..+ ..+++..++.+ + . ...+|
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~lC~~v~~~~~~~~~~~~~y~~~sp 472 (1057)
T TIGR01652 393 EIKDAIRERLGSYVENENSMLVESKGFTFVDPRLVDLLKTNKPNAKRINEFFLALALCHTVVPEFNDDGPEEITYQAASP 472 (1057)
T ss_pred hHHHHhhhcccccccccccccccccccccCcHHHHHhhhcCCchhHHHHHHHHHHHhcCcccccccCCCCCceEEEccCC
Confidence 0 00 00000 11222211111 1 1 13689
Q ss_pred HHHHHHHHHHhcCCccccccCC-------------Ce------EEecCCe-eEEEEc--C---eEEEeecHHHHhhcCCC
Q 002354 630 IGKAIVEAAEFSNCQNVKVADG-------------TF------IEEPGSG-TVAIIE--D---RKVSVGTIDWLRSHGVD 684 (932)
Q Consensus 630 i~~Ai~~~a~~~~~~~~~~~~~-------------~~------~~~~g~g-~~~~i~--~---~~~~~Gs~~~i~~~~~~ 684 (932)
.+.|++++++..|+.....+.. .+ .+...+. +...+. + ..++||+++.+.+.|..
T Consensus 473 ~E~ALl~~a~~~g~~~~~~~~~~~~~~i~~~~~~~~~~il~~~pF~s~rKrmSviv~~~~~~~~l~~KGA~e~il~~~~~ 552 (1057)
T TIGR01652 473 DEAALVKAARDVGFVFFERTPKSISLLIEMHGETKEYEILNVLEFNSDRKRMSVIVRNPDGRIKLLCKGADTVIFKRLSS 552 (1057)
T ss_pred cHHHHHHHHHHCCCEEEEecCCceEEEEEeCCCEEEEEEEEecccCCCCCeEEEEEEeCCCeEEEEEeCcHHHHHHHhhc
Confidence 9999999998887653321111 11 1111222 222222 2 24899999999988763
Q ss_pred Cc------hhhhHHHHHhCCCeEEEEEE--------------------------------------CCEEEEEEEecccc
Q 002354 685 TS------TFQEVEMEDLMNQSLVYVGV--------------------------------------DNMLAGLIYVEDRI 720 (932)
Q Consensus 685 ~~------~~~~~~~~~~~g~~~~~va~--------------------------------------~~~~lG~i~l~D~l 720 (932)
.. ..+..++++.+|.+++.+++ |++|+|+++++|++
T Consensus 553 ~~~~~~~~~~~~~~~~a~~GlRtL~~A~k~l~~~e~~~~~~~~~~a~~~~~~r~~~~~~~~~~iE~~L~~lG~~gieD~l 632 (1057)
T TIGR01652 553 GGNQVNEETKEHLENYASEGLRTLCIAYRELSEEEYEEWNEEYNEASTALTDREEKLDVVAESIEKDLILLGATAIEDKL 632 (1057)
T ss_pred cchhHHHHHHHHHHHHHHcCCcEEEEEEEECCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCEEEEEEEEhhhh
Confidence 21 11123346778999888763 56899999999999
Q ss_pred cHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC---------------------------------------
Q 002354 721 RDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD--------------------------------------- 761 (932)
Q Consensus 721 r~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~--------------------------------------- 761 (932)
|++++++|+.|+++||++||+|||+.+||.++|+++|+...
T Consensus 633 q~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 712 (1057)
T TIGR01652 633 QEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLSRNMEQIVITSESLDATRSVEAAIKFGLEGTSEEFNNLGDS 712 (1057)
T ss_pred hhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCCCCCCCeEEEEecCchhhhHHHHHHHHHHHHHHHHhhhhhccC
Confidence 99999999999999999999999999999999999997310
Q ss_pred ---------------------------------ceecccChhhHHHHHHHHhhC-CCEEEEEcCCcccHHHHHhCCeeEE
Q 002354 762 ---------------------------------KVLSGVKPNEKKRFINELQND-ENVVAMVGDGINDAAALASSHIGVA 807 (932)
Q Consensus 762 ---------------------------------~v~~~~~p~~K~~~v~~l~~~-g~~v~~vGDg~ND~~al~~A~vgIa 807 (932)
.|+||++|+||.++|+.+|+. |+.|+|+|||.||++||++|||||+
T Consensus 713 ~~~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk~~~~~~vl~iGDG~ND~~mlk~AdVGIg 792 (1057)
T TIGR01652 713 GNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVKKSTGKTTLAIGDGANDVSMIQEADVGVG 792 (1057)
T ss_pred CceEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHHHHHHHHhcCCCeEEEEeCCCccHHHHhhcCeeeE
Confidence 289999999999999999998 9999999999999999999999998
Q ss_pred ec-CchHHHHhhcCEEEeCCChhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhc-cccccccHHHHHHH
Q 002354 808 MG-GGVGAASEVASVVLMGNRLSQLLVAL-ELSRLTMKTVKQNLWWAFGYNIVGIPIAA-GVLLP-VTGTMLTPSIAGAL 883 (932)
Q Consensus 808 ~~-~~~~~a~~~ad~vl~~~~~~~i~~~i-~~gR~~~~~i~~nl~~a~~~N~i~i~la~-~~~~~-~~g~~l~P~~aa~~ 883 (932)
+. .....|+.+||+++. ++..+.+++ .+||.+++++++.+.|.+..|++.+.+.+ +.++. +.| .+|.-...+
T Consensus 793 i~g~eg~qA~~aaD~~i~--~F~~L~~lll~~GR~~~~r~~~~i~~~~~kn~~~~~~~~~~~~~~~~s~--~~~~~~~~l 868 (1057)
T TIGR01652 793 ISGKEGMQAVMASDFAIG--QFRFLTKLLLVHGRWSYKRISKMILYFFYKNLIFAIIQFWYSFYNGFSG--QTLYEGWYM 868 (1057)
T ss_pred ecChHHHHHHHhhhhhhh--hHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHH
Confidence 84 222368899999997 599999988 77999999999999999999986554433 22221 122 345556667
Q ss_pred hhhhHHHHHHHhhhhccccccccccccCCCCC
Q 002354 884 MGLSSIGVMANSLLLRLKFSSKQKASFQAPSS 915 (932)
Q Consensus 884 m~~ssl~v~lnsl~l~~~~~~~~~~~~k~~~~ 915 (932)
+.+..+...+.++.+.....+.++..++++|.
T Consensus 869 ~~~n~~~t~lp~~~l~~~d~~~~~~~l~~~P~ 900 (1057)
T TIGR01652 869 VLYNVFFTALPVISLGVFDQDVSASLSLRYPQ 900 (1057)
T ss_pred HHHHHHHHhHHHHHHHHhcccCCHHHHHhChH
Confidence 77888888888888865545555555666666
No 26
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.4e-68 Score=602.20 Aligned_cols=610 Identities=21% Similarity=0.273 Sum_probs=457.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccCCCeEEEEEecCCCC
Q 002354 296 MNTLVGLGAVSSFTVSSLAALVPKLGWKAFFEEPIMLIAFVLLGKNLEQRAKIKATSDMTGLLGILPSKARLLVDNDAKD 375 (932)
Q Consensus 296 md~Li~l~~~~a~~~s~~~~~~~~~~~~~yf~~~~~il~~~llg~~le~~~~~ka~~~l~~L~~~~p~~~~vir~~~~~g 375 (932)
..+|+.+++.++|+...+..-..+...+.+...++++...+.+.-....++..|..+-++.+.++.|..++|+|+ |
T Consensus 96 ~~ill~~~a~l~~~~y~~~~s~~~~~~~~nly~giiL~~vv~vtg~~~~~qe~ks~~im~sF~~l~P~~~~ViRd----g 171 (1019)
T KOG0203|consen 96 FSILLWIGAILCFVAYGIQASTEDDPSDDNLYLGIVLAAVVIVTGLFSYYQEAKSSKIMDSFKNLVPQQALVIRD----G 171 (1019)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCCcceEEEEEEEEEEEEEecCCCccchhhHHHHHHHhccchhhheeeec----c
Confidence 456777777777764443332211111233334445555555556667777888899999999999999999998 5
Q ss_pred cEEEEeCCCccCCCEEEEcCCCEEeeeEEEEeee-eEEeccccccCCCceeecCC----------CccccceeeecCcEE
Q 002354 376 SIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAGR-STVDESSFTGEPLPVTKIPE----------SEVAAGSINLNGTLT 444 (932)
Q Consensus 376 ~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll~G~-~~VDES~LTGES~Pv~K~~g----------~~V~aGt~v~~G~~~ 444 (932)
+.+.+..++|++||+|.++-|++||||.+++++. ++||+|+|||||+|..+.+. +.-|.+|.+++|..+
T Consensus 172 ~k~~i~~eelVvGD~v~vk~GdrVPADiRiis~~g~~vdnsslTGesEP~~~~~~~t~~~~~Et~Ni~f~st~~veG~~~ 251 (1019)
T KOG0203|consen 172 EKMTINAEELVVGDLVEVKGGDRVPADIRIISATGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTGR 251 (1019)
T ss_pred eeEEechhhcccccceeeccCCcccceeEEEEecceeEeccccccccCCccCCccccccCchhheeeeeeeeEEecceEE
Confidence 8899999999999999999999999999999886 89999999999999998763 347889999999999
Q ss_pred EEEEecCCcchHHHHHHHHHHhhcCCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcccchhccCCcHHHHHHHH
Q 002354 445 VEVRRPGGETAMGDIVRLVEEAQSREAPVQRLADQVSGHFTYGVIALSAATFVFWNLFGAHVLPTAIQYGGPVSLALQLS 524 (932)
Q Consensus 445 ~~V~~tG~~T~~gki~~~v~~a~~~~~~lq~~~d~~~~~~~~~vl~la~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a 524 (932)
+.|++||.+|.+|+|..+-..-+..++|+++..+++..+.+...+.+.+..|++-... +..|..++.+.
T Consensus 252 givi~tGd~Tv~G~ia~l~~~~~~~~t~~~~ei~~fi~~it~vAi~~~i~fF~~~~~~-----------gy~~l~avv~~ 320 (1019)
T KOG0203|consen 252 GIVIATGDRTVMGRIASLASGLEDGKTPIAKEIEHFIHIITGVAIFLGISFFILALIL-----------GYEWLRAVVFL 320 (1019)
T ss_pred EEEEecCCceEEeehhhhhccCCCCCCcchhhhhchHHHHHHHHHHHHHHHHHHHHhh-----------cchhHHHhhhh
Confidence 9999999999999999998888889999999999998877776666666666543333 34567788888
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHhhhcCccccCchHHHhcccccEEEecCCCCcccCceEEEEEEecCCCCCCCCCC
Q 002354 525 CSVLVVACPCALGLATPTAMLVGTSLGATRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQ 604 (932)
Q Consensus 525 i~vLvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~ 604 (932)
+.+++..+|.+|+..++..+....++++++++++|++++.|.+|...+||.|||||||+|.|.|.++|.++.........
T Consensus 321 i~iivAnvPeGL~~tvTv~LtltakrMa~Knc~vknLeavetlGsts~I~SDktGTlTqnrMtVahlw~d~~i~~~d~~~ 400 (1019)
T KOG0203|consen 321 IGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHLWFDNQIHEADTTE 400 (1019)
T ss_pred heeEEecCcCCccceehhhHHHHHHHHhhceeEEeeeeheeecccceeEeecceeeEEecceEEEeeccCCceeeeechh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876544322111
Q ss_pred CC------CCCCCHHHHHHHHHHhcc----------------cCCCcHHHHHHHHHHhcCCc--cccccCCCeEEecCCe
Q 002354 605 NP------IHPLSETEILKFAAGVES----------------NTVHPIGKAIVEAAEFSNCQ--NVKVADGTFIEEPGSG 660 (932)
Q Consensus 605 ~~------~~~~~~~~ll~laa~~e~----------------~s~hPi~~Ai~~~a~~~~~~--~~~~~~~~~~~~~g~g 660 (932)
+. ..+-.-.++.+.+..+.. -..++.+.|++++++...-. ..+.+.....++|...
T Consensus 401 ~~~~~~~~~~~~~~~~l~r~~~lCn~a~~~~gq~dvPv~kk~v~G~~se~ALlk~~e~~~~~~~~~R~~~~kv~eipfNS 480 (1019)
T KOG0203|consen 401 DQSGQSFDKSSATFIALSRIATLCNRAVFKPGQDDVPVLKRDVAGDASEVALLKFIELILGSVMELRERNPKVAEIPFNS 480 (1019)
T ss_pred hhhcccccccCchHHHHHHHHHHhCcceecccccCCceeeeeccCCHHHHHHHHHHHHhcchHHHHHHhhHHhhcCCccc
Confidence 00 011122344444332211 12578888999887643211 1111111112222111
Q ss_pred -----eEEEE-------cCeEEEeecHHHHhhcCCCCc------hhhhH--HH-------HHhCCCeE------------
Q 002354 661 -----TVAII-------EDRKVSVGTIDWLRSHGVDTS------TFQEV--EM-------EDLMNQSL------------ 701 (932)
Q Consensus 661 -----~~~~i-------~~~~~~~Gs~~~i~~~~~~~~------~~~~~--~~-------~~~~g~~~------------ 701 (932)
+.... +--.+.||++|.+.++|.... +..+. +. ....|.++
T Consensus 481 t~Kyqlsih~~~d~~~~~~~l~mKGape~il~~CSTi~i~g~e~pld~~~~~~f~~ay~~lg~~GerVlgF~~~~l~~~~ 560 (1019)
T KOG0203|consen 481 TNKYQLSIHETEDPSDPRFLLVMKGAPERILDRCSTILINGEEKPLDEKLKEAFQEAYLELGGLGERVLGFCDLELPDEK 560 (1019)
T ss_pred ccceEEEEEecCCCCCccceeeecCChHHHHhhccceeecCCCCCcCHHHHHHHHHHHHHhhhcchHHHHHHHHhcchhc
Confidence 11110 112377899999999886421 11000 00 00111111
Q ss_pred -----EEE-------EECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC---------
Q 002354 702 -----VYV-------GVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--------- 760 (932)
Q Consensus 702 -----~~v-------a~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--------- 760 (932)
.+- -.++.|+|++.+-|++|..+++++.+||.+||+|+|+|||++.||+++|++.||-.
T Consensus 561 ~p~~~~f~~d~~n~p~~nl~FlGl~s~idPPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA~~vgIi~~~~et~e~~ 640 (1019)
T KOG0203|consen 561 FPRGFQFDTDDVNFPTDNLRFLGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKSVGIISEGSETVEDI 640 (1019)
T ss_pred CCCceEeecCCCCCcchhccccchhhccCCCcccCchhhhhhhhhCceEEEEecCccchhhhhhhheeeecCCchhhhhh
Confidence 110 12568999999999999999999999999999999999999999999999999621
Q ss_pred ------------------------------------------CceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHH
Q 002354 761 ------------------------------------------DKVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAA 798 (932)
Q Consensus 761 ------------------------------------------~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~a 798 (932)
+.||||.+|+||+-||+.+|+.|..|+.+|||+||+||
T Consensus 641 a~r~~~~v~~vn~~~a~a~VihG~eL~~~~~~qld~il~nh~eIVFARTSPqQKLiIVe~cQr~GaiVaVTGDGVNDsPA 720 (1019)
T KOG0203|consen 641 AKRLNIPVEQVNSRDAKAAVIHGSELPDMSSEQLDELLQNHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPA 720 (1019)
T ss_pred HHhcCCcccccCccccceEEEecccccccCHHHHHHHHHhCCceEEEecCccceEEeEhhhhhcCcEEEEeCCCcCCChh
Confidence 15899999999999999999999999999999999999
Q ss_pred HHhCCeeEEec-CchHHHHhhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc--c
Q 002354 799 LASSHIGVAMG-GGVGAASEVASVVLMGNRLSQLLVALELSRLTMKTVKQNLWWAFGYNIVGIPIAAGVLLPVTGTM--L 875 (932)
Q Consensus 799 l~~A~vgIa~~-~~~~~a~~~ad~vl~~~~~~~i~~~i~~gR~~~~~i~~nl~~a~~~N~i~i~la~~~~~~~~g~~--l 875 (932)
||.|||||||| .|+|.+|++||++|++|||..|+.-+++||.+|+|+||.|.|.++.|+--|...+..+ ++|+- +
T Consensus 721 LKKADIGVAMGiaGSDvsKqAADmILLDDNFASIVtGVEEGRLiFDNLKKsIAYTLTsNipEI~PfL~fi--~~giPLpl 798 (1019)
T KOG0203|consen 721 LKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLLFI--LFGIPLPL 798 (1019)
T ss_pred hcccccceeeccccchHHHhhcceEEecCcchhheeecccceehhhhHHHHHHHHHHhcchhHhHHHHHH--HhCCCccc
Confidence 99999999999 9999999999999999999999999999999999999999999999987554332211 23432 2
Q ss_pred cHHHHHHHhhhhHHHHHHHhhhhccccccccccccCCCCCC-CCCCccccccc
Q 002354 876 TPSIAGALMGLSSIGVMANSLLLRLKFSSKQKASFQAPSSR-VNSNVDSHQLM 927 (932)
Q Consensus 876 ~P~~aa~~m~~ssl~v~lnsl~l~~~~~~~~~~~~k~~~~~-~~~~~~~~~~~ 927 (932)
+++ ..+..-+ ..-+..|+.| .+.+++.++++++|++ ++-..-.|+|.
T Consensus 799 gti-tIL~IDL--gTDmvPAiSL--AYE~aEsDIM~r~PR~p~~D~LVN~rLi 846 (1019)
T KOG0203|consen 799 GTV-TILCIDL--GTDIVPAISL--AYEKAESDIMLRPPRNPKDDKLVNKRLI 846 (1019)
T ss_pred chh-hhhhhHh--hcccchhhhH--hccCchhhHHhcCCCCCcccccccchhH
Confidence 232 2222222 2233445555 4566777889999997 77777777664
No 27
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-65 Score=584.84 Aligned_cols=568 Identities=19% Similarity=0.250 Sum_probs=424.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccCCCeEEEEEecCCCCcEEEEeCCCccCCCEEEEcC-CCEEee
Q 002354 323 KAFFEEPIMLIAFVLLGKNLEQRAKIKATSDMTGLLGILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLP-GDRIPA 401 (932)
Q Consensus 323 ~~yf~~~~~il~~~llg~~le~~~~~ka~~~l~~L~~~~p~~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~-Ge~IPa 401 (932)
+.|+..++.++.+.+.+..+..|..++.+..++++.+. +..++|+|+ |.+++|+++||+||||+.+.+ +-..||
T Consensus 211 d~Y~~YA~cI~iisv~Si~~sv~e~r~qs~rlr~mv~~-~~~V~V~R~----g~~~ti~S~eLVPGDil~i~~~~~~~Pc 285 (1140)
T KOG0208|consen 211 DSYYYYAFCIVIISVYSIVLSVYETRKQSIRLRSMVKF-TCPVTVIRD----GFWETVDSSELVPGDILYIPPPGKIMPC 285 (1140)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEEC----CEEEEEeccccccccEEEECCCCeEeec
Confidence 45666677777778888888888888888888877665 578889987 589999999999999999999 899999
Q ss_pred eEEEEeeeeEEeccccccCCCceeecCC-------------------Cccccceeeec------CcEEEEEEecCCcchH
Q 002354 402 DGVVRAGRSTVDESSFTGEPLPVTKIPE-------------------SEVAAGSINLN------GTLTVEVRRPGGETAM 456 (932)
Q Consensus 402 Dgvll~G~~~VDES~LTGES~Pv~K~~g-------------------~~V~aGt~v~~------G~~~~~V~~tG~~T~~ 456 (932)
|++|++|+|.||||||||||+|+.|.+- +.+|+||.+++ +...+.|++||.+|..
T Consensus 286 Da~Li~g~civNEsmLTGESVPv~K~~l~~~~~~~~~~~~~~~~~~rh~lfcGT~vlq~r~~~g~~v~a~V~RTGF~T~K 365 (1140)
T KOG0208|consen 286 DALLISGDCIVNESMLTGESVPVTKTPLPMGTDSLDSITISMSTNSRHTLFCGTKVLQARAYLGGPVLAMVLRTGFSTTK 365 (1140)
T ss_pred ceEEEeCcEEeecccccCCcccccccCCccccccCcCeeechhhcCcceeeccceEEEeecCCCCceEEEEEeccccccc
Confidence 9999999999999999999999999873 24899999874 6799999999999999
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcccchhccCCcHHHHHHHHHHHHHHHhhhcc
Q 002354 457 GDIVRLVEEAQSREAPVQRLADQVSGHFTYGVIALSAATFVFWNLFGAHVLPTAIQYGGPVSLALQLSCSVLVVACPCAL 536 (932)
Q Consensus 457 gki~~~v~~a~~~~~~lq~~~d~~~~~~~~~vl~la~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ai~vLvva~P~aL 536 (932)
|+++|.+.+++....++.+.+.++. ....+++++.|++..+. ....|.+....+.+++.++.+.+|+||
T Consensus 366 GqLVRsilyPkP~~fkfyrds~~fi----~~l~~ia~~gfiy~~i~-------l~~~g~~~~~iiirsLDliTi~VPPAL 434 (1140)
T KOG0208|consen 366 GQLVRSILYPKPVNFKFYRDSFKFI----LFLVIIALIGFIYTAIV-------LNLLGVPLKTIIIRSLDLITIVVPPAL 434 (1140)
T ss_pred cHHHHhhcCCCCcccHHHHHHHHHH----HHHHHHHHHHHHHHhHh-------HHHcCCCHHHHhhhhhcEEEEecCCCc
Confidence 9999999998877766666555543 33334444444432221 123456778899999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhcCccccCchHHHhcccccEEEecCCCCcccCceEEEEEEecCCCCCCCCCC------------
Q 002354 537 GLATPTAMLVGTSLGATRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQ------------ 604 (932)
Q Consensus 537 ~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~------------ 604 (932)
|-+.++....+++|+.|+||.+-+++.+...|++|++|||||||||++.+.+..+.+.....+.....
T Consensus 435 PAaltvG~~~a~~RLkkk~IfCisP~rIn~~G~i~~~cFDKTGTLTEdGLDl~gv~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (1140)
T KOG0208|consen 435 PAALTVGIIYAQSRLKKKGIFCISPQRINLCGKLNLVCFDKTGTLTEDGLDLWGVVPVERNVDDGPELKVVTEDSLQLFY 514 (1140)
T ss_pred hhhhhHHHHHHHHHHHhcCeEEcCccceeecceeeEEEEcCCCcccccceeEEEEEeccccccccchhhhhhhhhcccee
Confidence 99999999999999999999999999999999999999999999999999999998754321111000
Q ss_pred --CCCCCCCH-HHHHHHHHHhccc---------CCCcHHHHHHHHHHhcC---------------Ccc--ccccCC---C
Q 002354 605 --NPIHPLSE-TEILKFAAGVESN---------TVHPIGKAIVEAAEFSN---------------CQN--VKVADG---T 652 (932)
Q Consensus 605 --~~~~~~~~-~~ll~laa~~e~~---------s~hPi~~Ai~~~a~~~~---------------~~~--~~~~~~---~ 652 (932)
.......+ ..+. ++.+.++ ..+|++..+.+...+.- ... .++... .
T Consensus 515 ~l~~~~~~~~~~~~~--~a~atCHSL~~v~g~l~GDPLdlkmfe~t~w~~ee~~~~~~~~~~~~~~~p~v~~p~~~~~~~ 592 (1140)
T KOG0208|consen 515 KLSLRSSSLPMGNLV--AAMATCHSLTLVDGTLVGDPLDLKMFESTGWVYEEADIEDEATREFNTLIPTVVRPPENAFNQ 592 (1140)
T ss_pred eccccccCCchHHHH--HHHhhhceeEEeCCeeccCceeeeeeeccceEEEeccccchhhhhhCCccCCEeCCCcccccC
Confidence 00000001 1111 1112222 24677766555432210 000 001000 0
Q ss_pred --------------eEEecC-CeeEEEE--cC----eEEEeecHHHHhhcCCCCc---h-hhhHHHHHhCCCeEEEEEE-
Q 002354 653 --------------FIEEPG-SGTVAII--ED----RKVSVGTIDWLRSHGVDTS---T-FQEVEMEDLMNQSLVYVGV- 706 (932)
Q Consensus 653 --------------~~~~~g-~g~~~~i--~~----~~~~~Gs~~~i~~~~~~~~---~-~~~~~~~~~~g~~~~~va~- 706 (932)
|++.+. +.+...+ .+ ..|.||+||.|.+.|.+.. + .+..+.+..+|++++.+|.
T Consensus 593 ~t~~~~~~~si~k~feF~S~LrRMSVIv~~~~e~~~~~ftKGaPE~I~~ic~p~tvP~dy~evl~~Yt~~GfRVIAlA~K 672 (1140)
T KOG0208|consen 593 STECGEGEISIVKQFEFSSALRRMSVIVSTGGEDKMMVFTKGAPESIAEICKPETVPADYQEVLKEYTHQGFRVIALASK 672 (1140)
T ss_pred CCcCCCcceEEEEecccchhhheEEEEEecCCCCceEeeccCCHHHHHHhcCcccCCccHHHHHHHHHhCCeEEEEEecC
Confidence 000010 1111112 11 2499999999999997542 2 2334557889999999875
Q ss_pred --------------------CCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC-----
Q 002354 707 --------------------DNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD----- 761 (932)
Q Consensus 707 --------------------~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~----- 761 (932)
|.+|+|+|.|++++|++++.+|++|++++|+++|+||||..||..+||+||+-+.
T Consensus 673 ~L~~~~~~~~~~~~Rd~vEs~l~FlGLiVmeNkLK~~T~~VI~eL~~AnIRtVMcTGDNllTaisVakeCgmi~p~~~v~ 752 (1140)
T KOG0208|consen 673 ELETSTLQKAQKLSRDTVESNLEFLGLIVMENKLKEETKRVIDELNRANIRTVMCTGDNLLTAISVAKECGMIEPQVKVI 752 (1140)
T ss_pred ccCcchHHHHhhccHhhhhccceeeEEEEeecccccccHHHHHHHHhhcceEEEEcCCchheeeehhhcccccCCCCeEE
Confidence 6789999999999999999999999999999999999999999999999998210
Q ss_pred ------------------------------------------------------------------------------ce
Q 002354 762 ------------------------------------------------------------------------------KV 763 (932)
Q Consensus 762 ------------------------------------------------------------------------------~v 763 (932)
.|
T Consensus 753 ~~~~~~~~~~~~~~i~w~~ve~~~~~~~~~~~~~~~~~~~~~~d~~~~~~yhlA~sG~~f~~i~~~~~~l~~~Il~~~~V 832 (1140)
T KOG0208|consen 753 IPELEPPEDDSIAQIVWLCVESQTQFLDPKEPDPDLASVKLSLDVLSEKDYHLAMSGKTFQVILEHFPELVPKILLKGTV 832 (1140)
T ss_pred EEeccCCccCCCceeEEEEccCccccCCCCccCccccCCccChhhhccceeEEEecCchhHHHHhhcHHHHHHHHhcCeE
Confidence 69
Q ss_pred ecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhhcCEEEeCCChhHHHHHHHHHHHHHH
Q 002354 764 LSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALASSHIGVAMGGGVGAASEVASVVLMGNRLSQLLVALELSRLTMK 843 (932)
Q Consensus 764 ~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl~~~~~~~i~~~i~~gR~~~~ 843 (932)
||||+|+||.++|+.||+.|+.|+|||||.||+.||++|||||+++++ +|.-+|.++-...+++.|+++|++||+.+-
T Consensus 833 fARMsP~qK~~Lie~lQkl~y~VgfCGDGANDCgALKaAdvGISLSea--EASvAApFTSk~~~I~cVp~vIrEGRaALV 910 (1140)
T KOG0208|consen 833 FARMSPDQKAELIEALQKLGYKVGFCGDGANDCGALKAADVGISLSEA--EASVAAPFTSKTPSISCVPDVIREGRAALV 910 (1140)
T ss_pred EeecCchhHHHHHHHHHhcCcEEEecCCCcchhhhhhhcccCcchhhh--hHhhcCccccCCCchhhHhHHHhhhhhhhh
Confidence 999999999999999999999999999999999999999999999754 577789999888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHhhhhHHHHHHHhhhhccccccccccccCCCCCC
Q 002354 844 TVKQNLWWAFGYNIVGIPIAAGVLLPVTGTMLTPSIAGALMGLSSIGVMANSLLLRLKFSSKQKASFQAPSSR 916 (932)
Q Consensus 844 ~i~~nl~~a~~~N~i~i~la~~~~~~~~g~~l~P~~aa~~m~~ssl~v~lnsl~l~~~~~~~~~~~~k~~~~~ 916 (932)
+-...++|...|.++...... .+|. .+..++-.. ++..--++.+.-++.+. ++.+.+....++||.+
T Consensus 911 TSf~~FkYMalYs~iqFisv~-~LY~-~~~nl~D~Q---fl~iDLlii~pia~~m~-~~~a~~~L~~~rP~~~ 977 (1140)
T KOG0208|consen 911 TSFACFKYMALYSAIQFISVV-FLYL-INSNLGDLQ---FLFIDLLIITPIAVMMS-RFDASDKLFPKRPPTN 977 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHhhh-eeee-ecccccchh---hhhhHHHHHHHHHHHHc-cCcHHHHhcCCCCCcc
Confidence 999999999999987654332 2332 233333332 22222233333334443 3345555556666654
No 28
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-62 Score=527.29 Aligned_cols=561 Identities=25% Similarity=0.332 Sum_probs=427.9
Q ss_pred HHHHHHHHHhhc----CCCCchhHHHHHHHHHHHHHHHHHhccc-cccchhhhhHHHHHH-HHHHHHHHHHHHHHHhHHH
Q 002354 280 QLILDGVKSLFK----GAPNMNTLVGLGAVSSFTVSSLAALVPK-LGWKAFFEEPIMLIA-FVLLGKNLEQRAKIKATSD 353 (932)
Q Consensus 280 ~~~~~a~~~l~~----~~~nmd~Li~l~~~~a~~~s~~~~~~~~-~~~~~yf~~~~~il~-~~llg~~le~~~~~ka~~~ 353 (932)
+-++.+|+.|.- +.| .-+++.++++.+.++.++.-+++. .....|+....++++ -+++..+-|..++.|....
T Consensus 15 ~A~~~af~KL~P~~~~kNP-VMFvv~vg~~lt~~l~~~~~lfg~~~~~~~f~~~i~~~L~fTVlFANfaEa~AEGrgKAq 93 (681)
T COG2216 15 QALKDAFKKLNPRVLVKNP-VMFVVEVGSILTTFLTIFPDLFGGTGGSRLFNLAITIILWFTVLFANFAEAVAEGRGKAQ 93 (681)
T ss_pred HHHHHHHHhcChHHhhhCC-eEEeehHHHHHHHHHHHhhhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 444555555532 223 334556666666655555444432 122334433333333 3667888888887777666
Q ss_pred HHhhhccCC-CeEEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeeeEEEEeeeeEEeccccccCCCceeecCC---
Q 002354 354 MTGLLGILP-SKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAGRSTVDESSFTGEPLPVTKIPE--- 429 (932)
Q Consensus 354 l~~L~~~~p-~~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll~G~~~VDES~LTGES~Pv~K~~g--- 429 (932)
...|++... ..+++++++ |+++.|++.+|+.||+|+|+.||.||+||.|++|.+.||||.+||||-||-|..|
T Consensus 94 AdsLr~~~~~~~A~~l~~~---g~~~~v~st~Lk~gdiV~V~age~IP~DGeVIeG~asVdESAITGESaPViresGgD~ 170 (681)
T COG2216 94 ADSLRKTKTETIARLLRAD---GSIEMVPATELKKGDIVLVEAGEIIPSDGEVIEGVASVDESAITGESAPVIRESGGDF 170 (681)
T ss_pred HHHHHHHHHHHHHHHhcCC---CCeeeccccccccCCEEEEecCCCccCCCeEEeeeeecchhhccCCCcceeeccCCCc
Confidence 666665433 356666654 6899999999999999999999999999999999999999999999999999998
Q ss_pred CccccceeeecCcEEEEEEecCCcchHHHHHHHHHHhhcCCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcccc
Q 002354 430 SEVAAGSINLNGTLTVEVRRPGGETAMGDIVRLVEEAQSREAPVQRLADQVSGHFTYGVIALSAATFVFWNLFGAHVLPT 509 (932)
Q Consensus 430 ~~V~aGt~v~~G~~~~~V~~tG~~T~~gki~~~v~~a~~~~~~lq~~~d~~~~~~~~~vl~la~~~~i~~~~~~~~~~~~ 509 (932)
+.|-.||.+.+..++++++....+|++.|++.+++.++.+|+|-+--+.-+..-++.+.++.....+-+..+.+
T Consensus 171 ssVtGgT~v~SD~l~irita~pG~sFlDrMI~LVEgA~R~KTPNEIAL~iLL~~LTliFL~~~~Tl~p~a~y~~------ 244 (681)
T COG2216 171 SSVTGGTRVLSDWLKIRITANPGETFLDRMIALVEGAERQKTPNEIALTILLSGLTLIFLLAVATLYPFAIYSG------ 244 (681)
T ss_pred ccccCCcEEeeeeEEEEEEcCCCccHHHHHHHHhhchhccCChhHHHHHHHHHHHHHHHHHHHHhhhhHHHHcC------
Confidence 77999999999999999999999999999999999999999998766554433333222211111111111110
Q ss_pred hhccCCcHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhhhcCccccCchHHHhcccccEEEecCCCCcccCceEEE
Q 002354 510 AIQYGGPVSLALQLSCSVLVVACPCALGLATPTAMLVGTSLGATRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVT 589 (932)
Q Consensus 510 ~~~~~~~~~~~l~~ai~vLvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~ 589 (932)
+.. ..+...++++++.+|-..+--.+.-=..++.+..+.+++-+++.++|..|.+|+++.|||||+|.|+-.-.
T Consensus 245 ----g~~--~~i~~LiALlV~LIPTTIGgLLsAIGIAGMdRv~~~NViA~SGRAVEaaGDvdtliLDKTGTIT~GnR~A~ 318 (681)
T COG2216 245 ----GGA--ASVTVLVALLVCLIPTTIGGLLSAIGIAGMDRVTQFNVIATSGRAVEAAGDVDTLLLDKTGTITLGNRQAS 318 (681)
T ss_pred ----CCC--cCHHHHHHHHHHHhcccHHHHHHHhhhhhhhHhhhhceeecCcchhhhcCCccEEEecccCceeecchhhh
Confidence 111 13345677888888888877777666788999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCCccccccCC-CeEEecC------CeeE
Q 002354 590 KVVTSGSLTDPNSKQNPIHPLSETEILKFAAGVESNTVHPIGKAIVEAAEFSNCQNVKVADG-TFIEEPG------SGTV 662 (932)
Q Consensus 590 ~i~~~~~~~~~~~~~~~~~~~~~~~ll~laa~~e~~s~hPi~~Ai~~~a~~~~~~~~~~~~~-~~~~~~g------~g~~ 662 (932)
++++. ++.+++++.+.+....-..+.|-.+.|++.+++.+......... ..+++|. .|+.
T Consensus 319 ~f~p~-------------~gv~~~~la~aa~lsSl~DeTpEGrSIV~LA~~~~~~~~~~~~~~~~~fvpFtA~TRmSGvd 385 (681)
T COG2216 319 EFIPV-------------PGVSEEELADAAQLASLADETPEGRSIVELAKKLGIELREDDLQSHAEFVPFTAQTRMSGVD 385 (681)
T ss_pred heecC-------------CCCCHHHHHHHHHHhhhccCCCCcccHHHHHHHhccCCCcccccccceeeecceeccccccc
Confidence 98886 77889999988888888889999999999999876543221111 1122221 1222
Q ss_pred EEEcCeEEEeecHHHHhhcCC----C-Cch-hhhHHHHHhCCCeEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCC
Q 002354 663 AIIEDRKVSVGTIDWLRSHGV----D-TST-FQEVEMEDLMNQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGI 736 (932)
Q Consensus 663 ~~i~~~~~~~Gs~~~i~~~~~----~-~~~-~~~~~~~~~~g~~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi 736 (932)
. -++++++||+.+.++++-. . ... ....++-+..|.+.+.+..|++++|.+.++|.++|+.+|-+.+||++||
T Consensus 386 ~-~~~~~irKGA~dai~~~v~~~~g~~p~~l~~~~~~vs~~GGTPL~V~~~~~~~GVI~LkDivK~Gi~ERf~elR~MgI 464 (681)
T COG2216 386 L-PGGREIRKGAVDAIRRYVRERGGHIPEDLDAAVDEVSRLGGTPLVVVENGRILGVIYLKDIVKPGIKERFAELRKMGI 464 (681)
T ss_pred C-CCCceeecccHHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCceEEEECCEEEEEEEehhhcchhHHHHHHHHHhcCC
Confidence 1 1237899999988865422 1 111 1223345677999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCHHHHHHHHHHcCCCCCceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHHHHhCCeeEEecCchHHHH
Q 002354 737 GVYMLSGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALASSHIGVAMGGGVGAAS 816 (932)
Q Consensus 737 ~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~ 816 (932)
+++|+||||+.||..+|++.|++ ++.++.+||+|.+.|+.-|.+|+.|+|+|||+||+|||++||||+||.+|++.||
T Consensus 465 kTvM~TGDN~~TAa~IA~EAGVD--dfiAeatPEdK~~~I~~eQ~~grlVAMtGDGTNDAPALAqAdVg~AMNsGTqAAk 542 (681)
T COG2216 465 KTVMITGDNPLTAAAIAAEAGVD--DFIAEATPEDKLALIRQEQAEGRLVAMTGDGTNDAPALAQADVGVAMNSGTQAAK 542 (681)
T ss_pred eEEEEeCCCHHHHHHHHHHhCch--hhhhcCChHHHHHHHHHHHhcCcEEEEcCCCCCcchhhhhcchhhhhccccHHHH
Confidence 99999999999999999999998 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhhcccc
Q 002354 817 EVASVVLMGNRLSQLLVALELSRLTMKTVKQNLWWAFG----YNIVGIPIAAGVLLPVTG 872 (932)
Q Consensus 817 ~~ad~vl~~~~~~~i~~~i~~gR~~~~~i~~nl~~a~~----~N~i~i~la~~~~~~~~g 872 (932)
|++..|=++.|...+.+.+++|++.+-+=----.|++. .=+..||..+...+|-.+
T Consensus 543 EAaNMVDLDS~PTKlievV~IGKqlLiTRGaLTTFSIANDvAKYFaIiPA~F~~~~P~l~ 602 (681)
T COG2216 543 EAANMVDLDSNPTKLIEVVEIGKQLLITRGALTTFSIANDVAKYFAIIPAMFAAAYPQLG 602 (681)
T ss_pred HhhcccccCCCccceehHhhhhhhheeecccceeeehhhHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999865331111122221 123456665556666555
No 29
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-62 Score=539.92 Aligned_cols=498 Identities=23% Similarity=0.295 Sum_probs=398.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhhccCCCeEEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeeeEEEEeee-
Q 002354 331 MLIAFVLLGKNLEQRAKIKATSDMTGLLGILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAGR- 409 (932)
Q Consensus 331 ~il~~~llg~~le~~~~~ka~~~l~~L~~~~p~~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll~G~- 409 (932)
.|+.++++...+....+.++.+....|+.-+..++.|+|| |+|.++.+++||||||+.++.|++||||++|++|+
T Consensus 102 gI~~LLliNsti~FveE~nAGn~aa~L~a~LA~KakVlRD----Gkw~E~eAs~lVPGDIlsik~GdIiPaDaRLl~gD~ 177 (942)
T KOG0205|consen 102 GICCLLLINSTISFIEENNAGNAAAALMAGLAPKAKVLRD----GKWSEQEASILVPGDILSIKLGDIIPADARLLEGDP 177 (942)
T ss_pred hhheeeeecceeeeeeccccchHHHHHHhccCcccEEeec----CeeeeeeccccccCceeeeccCCEecCccceecCCc
Confidence 3344444544444444556777788888888889999998 69999999999999999999999999999999997
Q ss_pred eEEeccccccCCCceeecCCCccccceeeecCcEEEEEEecCCcchHHHHHHHHHHhhcCCChHHHHHHHHHhhHHHHHH
Q 002354 410 STVDESSFTGEPLPVTKIPESEVAAGSINLNGTLTVEVRRPGGETAMGDIVRLVEEAQSREAPVQRLADQVSGHFTYGVI 489 (932)
Q Consensus 410 ~~VDES~LTGES~Pv~K~~g~~V~aGt~v~~G~~~~~V~~tG~~T~~gki~~~v~~a~~~~~~lq~~~d~~~~~~~~~vl 489 (932)
..||+|.|||||.|+.|.+||++|+||.+.+|++.++|++||.+|+.|+-..++.. ......+|+-++.+..++...+.
T Consensus 178 LkiDQSAlTGESLpvtKh~gd~vfSgSTcKqGE~eaVViATg~~TF~GkAA~LVds-t~~~GHFqkVLt~IGn~ci~si~ 256 (942)
T KOG0205|consen 178 LKIDQSALTGESLPVTKHPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDS-TNQVGHFQKVLTGIGNFCICSIA 256 (942)
T ss_pred cccchhhhcCCccccccCCCCceecccccccceEEEEEEEeccceeehhhHHhhcC-CCCcccHHHHHHhhhhHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999987 45566788888887665543332
Q ss_pred HHHHHHHHHHHhhccCcccchhccCCcHHHHHHHHHHHHHHH-hhhcchhhHHHHHHHHHHHhhhcCccccCchHHHhcc
Q 002354 490 ALSAATFVFWNLFGAHVLPTAIQYGGPVSLALQLSCSVLVVA-CPCALGLATPTAMLVGTSLGATRGLLLRGGNILEKFA 568 (932)
Q Consensus 490 ~la~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ai~vLvva-~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg 568 (932)
+--++.+++.+... ...+......+.++++. +|.++|..++++++++..+++++|.++|+..++|.++
T Consensus 257 ~g~lie~~vmy~~q-----------~R~~r~~i~nLlvllIGgiPiamPtVlsvTMAiGs~rLaqqgAItkrmtAIEemA 325 (942)
T KOG0205|consen 257 LGMLIEITVMYPIQ-----------HRLYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMA 325 (942)
T ss_pred HHHHHHHHhhhhhh-----------hhhhhhhhhheheeeecccccccceeeeehhhHHHHHHHhcccHHHHHHHHHHhh
Confidence 21111111111111 12233444556666766 9999999999999999999999999999999999999
Q ss_pred cccEEEecCCCCcccCceEEEE--EEecCCCCCCCCCCCCCCCCCHHHHHHHHHHhc-ccCCCcHHHHHHHHHHhcCCcc
Q 002354 569 MVNTVVFDKTGTLTIGRPVVTK--VVTSGSLTDPNSKQNPIHPLSETEILKFAAGVE-SNTVHPIGKAIVEAAEFSNCQN 645 (932)
Q Consensus 569 ~v~~I~fDKTGTLT~g~~~v~~--i~~~~~~~~~~~~~~~~~~~~~~~ll~laa~~e-~~s~hPi~~Ai~~~a~~~~~~~ 645 (932)
.+|++|.|||||||.|+++|.+ +... ..+.++++++-.++... ....+.+++|++.....- +.
T Consensus 326 GmdVLCSDKTGTLTlNkLSvdknl~ev~------------v~gv~~D~~~L~A~rAsr~en~DAID~A~v~~L~dP--Ke 391 (942)
T KOG0205|consen 326 GMDVLCSDKTGTLTLNKLSVDKNLIEVF------------VKGVDKDDVLLTAARASRKENQDAIDAAIVGMLADP--KE 391 (942)
T ss_pred CceEEeecCcCceeecceecCcCcceee------------ecCCChHHHHHHHHHHhhhcChhhHHHHHHHhhcCH--HH
Confidence 9999999999999999999987 3222 25566777776665544 345578899998876541 11
Q ss_pred ccccCCCeEEecCC----eeEEEEc---C--eEEEeecHHHHhhcCCCCchh-----hhHHHHHhCCCeEEEEEEC----
Q 002354 646 VKVADGTFIEEPGS----GTVAIIE---D--RKVSVGTIDWLRSHGVDTSTF-----QEVEMEDLMNQSLVYVGVD---- 707 (932)
Q Consensus 646 ~~~~~~~~~~~~g~----g~~~~i~---~--~~~~~Gs~~~i~~~~~~~~~~-----~~~~~~~~~g~~~~~va~~---- 707 (932)
.......+++.|.. .+..++. | .++.||+|+++.+.|....+. +...+++..|.+-+.+++.
T Consensus 392 ara~ikevhF~PFnPV~Krta~ty~d~dG~~~r~sKGAPeqil~l~~~~~~i~~~vh~~id~~AeRGlRSLgVArq~v~e 471 (942)
T KOG0205|consen 392 ARAGIKEVHFLPFNPVDKRTALTYIDPDGNWHRVSKGAPEQILKLCNEDHDIPERVHSIIDKFAERGLRSLAVARQEVPE 471 (942)
T ss_pred HhhCceEEeeccCCccccceEEEEECCCCCEEEecCCChHHHHHHhhccCcchHHHHHHHHHHHHhcchhhhhhhhcccc
Confidence 11111223333432 2333332 2 358899999999887643322 2234466678777777752
Q ss_pred ---------CEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC------------------
Q 002354 708 ---------NMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK------------------ 760 (932)
Q Consensus 708 ---------~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~------------------ 760 (932)
.+++|+.-+-|++|.+..++|++-...|+.|.|+|||...-++..++++|+-.
T Consensus 472 ~~~~~~g~pw~~~gllp~fdpprhdsa~tirral~lGv~VkmitgdqlaI~keTgrrlgmgtnmypss~llG~~~~~~~~ 551 (942)
T KOG0205|consen 472 KTKESPGGPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGLGKDGSMP 551 (942)
T ss_pred ccccCCCCCcccccccccCCCCccchHHHHHHHHhccceeeeecchHHHHHHhhhhhhccccCcCCchhhccCCCCCCCC
Confidence 37999999999999999999999999999999999999999999999999732
Q ss_pred ----------CceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhhcCEEEeCCChhH
Q 002354 761 ----------DKVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALASSHIGVAMGGGVGAASEVASVVLMGNRLSQ 830 (932)
Q Consensus 761 ----------~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl~~~~~~~ 830 (932)
.+-|+.+.|++|.++|+.||++++.++|.|||.||+|+|+.||+|||+.+++|.|+.++|+|++...++.
T Consensus 552 ~~~v~elie~adgfAgVfpehKy~iV~~Lq~r~hi~gmtgdgvndapaLKkAdigiava~atdaar~asdiVltepglSv 631 (942)
T KOG0205|consen 552 GSPVDELIEKADGFAGVFPEHKYEIVKILQERKHIVGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSV 631 (942)
T ss_pred CCcHHHHhhhccCccccCHHHHHHHHHHHhhcCceecccCCCcccchhhcccccceeeccchhhhcccccEEEcCCCchh
Confidence 1457889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002354 831 LLVALELSRLTMKTVKQNLWWAFGYNIV 858 (932)
Q Consensus 831 i~~~i~~gR~~~~~i~~nl~~a~~~N~i 858 (932)
+..++..+|.+|++++..-.|+++..+-
T Consensus 632 iI~avltSraIfqrmknytiyavsitir 659 (942)
T KOG0205|consen 632 IISAVLTSRAIFQRMKNYTIYAVSITIR 659 (942)
T ss_pred hHHHHHHHHHHHHHHhhheeeeehhHHH
Confidence 9999999999999999988888776554
No 30
>PLN03190 aminophospholipid translocase; Provisional
Probab=100.00 E-value=2.3e-58 Score=577.94 Aligned_cols=596 Identities=18% Similarity=0.160 Sum_probs=422.1
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 002354 279 FQLILDGVKSLFKGAPNMNTLVGLGAVSSFTVSSLAALVPKLGWKAFFEEPIMLIAFVLLGKNLEQRAKIKATSDMTGLL 358 (932)
Q Consensus 279 ~~~~~~a~~~l~~~~~nmd~Li~l~~~~a~~~s~~~~~~~~~~~~~yf~~~~~il~~~llg~~le~~~~~ka~~~l~~L~ 358 (932)
|.|++..+...+++..|+.+|+..-+-....+| + .+...++.+.++++++..+++++|++.++|+++.++
T Consensus 100 ~tFlP~~L~eQF~r~aN~YFL~I~ilq~ip~~s------~-~~~~t~~~PL~~vl~v~~ike~~Ed~~r~k~d~~~N--- 169 (1178)
T PLN03190 100 FSFLPRNLFEQFHRVAYIYFLVIAVLNQLPQLA------V-FGRGASILPLAFVLLVTAVKDAYEDWRRHRSDRIEN--- 169 (1178)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCcc------c-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc---
Confidence 567777777788888999988643322111111 1 123445667788888999999999999999998765
Q ss_pred ccCCCeEEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeeeEEEEe-----eeeEEeccccccCCCceeecCCC---
Q 002354 359 GILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRA-----GRSTVDESSFTGEPLPVTKIPES--- 430 (932)
Q Consensus 359 ~~~p~~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll~-----G~~~VDES~LTGES~Pv~K~~g~--- 430 (932)
++.++|+++ |+++++++++|+|||+|.|++||+||||++|++ |.++||||.||||+.|+.|.+++
T Consensus 170 ---~~~~~v~~~----~~~~~i~~~~i~vGDiv~v~~ge~iPaD~~ll~Ss~~~G~~~Vdts~LdGEt~~k~k~~~~~~~ 242 (1178)
T PLN03190 170 ---NRLAWVLVD----DQFQEKKWKDIRVGEIIKIQANDTLPCDMVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETL 242 (1178)
T ss_pred ---CcEEEEEEC----CeEEEEeHHHCCCCCEEEECCCCEeeeeEEEEeccCCCceEEEEccccCCeeeeeEecccchhh
Confidence 578888876 588999999999999999999999999999997 88999999999999999997542
Q ss_pred ------------------------------------------ccccceeeecC-cEEEEEEecCCcchHHHHHHHHHHhh
Q 002354 431 ------------------------------------------EVAAGSINLNG-TLTVEVRRPGGETAMGDIVRLVEEAQ 467 (932)
Q Consensus 431 ------------------------------------------~V~aGt~v~~G-~~~~~V~~tG~~T~~gki~~~v~~a~ 467 (932)
.++.|+.+.+. .+.+.|++||.+|... ..-..+.
T Consensus 243 ~~~~~~~~~~~~i~~e~Pn~~l~~F~G~i~~~~~~~~l~~~n~llRG~~LrnT~~i~GvVVYTG~dTK~~---~N~~~~~ 319 (1178)
T PLN03190 243 SKIPEKEKINGLIKCEKPNRNIYGFQANMEVDGKRLSLGPSNIILRGCELKNTAWAIGVAVYCGRETKAM---LNNSGAP 319 (1178)
T ss_pred hcchhhhhceEEEEEeCCCccceeEEEEEEECCCcccCCccceeeccceecCCceEEEEEEEechhhhHh---hcCCCCC
Confidence 24455555555 4899999999999732 2233345
Q ss_pred cCCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcc---C-cccchhcc--------C-----CcH----HHHHHHHHH
Q 002354 468 SREAPVQRLADQVSGHFTYGVIALSAATFVFWNLFGA---H-VLPTAIQY--------G-----GPV----SLALQLSCS 526 (932)
Q Consensus 468 ~~~~~lq~~~d~~~~~~~~~vl~la~~~~i~~~~~~~---~-~~~~~~~~--------~-----~~~----~~~l~~ai~ 526 (932)
.+++++++.++++..++..+.+++|++++++...+.. . .+...++. . ..+ ...+...+.
T Consensus 320 ~K~S~le~~~N~~vi~l~~i~~~l~~i~~i~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li 399 (1178)
T PLN03190 320 SKRSRLETRMNLEIIILSLFLIALCTIVSVCAAVWLRRHRDELDTIPFYRRKDFSEGGPKNYNYYGWGWEIFFTFLMSVI 399 (1178)
T ss_pred CCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHHHHHHHHHH
Confidence 6789999999999988877777777776655432211 0 00000000 0 001 122333345
Q ss_pred HHHHHhhhcchhhHHHHHHHHHHHhhhc----------CccccCchHHHhcccccEEEecCCCCcccCceEEEEEEecCC
Q 002354 527 VLVVACPCALGLATPTAMLVGTSLGATR----------GLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGS 596 (932)
Q Consensus 527 vLvva~P~aL~la~p~a~~~~~~~~a~~----------gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~ 596 (932)
++-..+|..|.+.+.++.......+.++ .+.+|+.+..|+||+|++||+|||||||+|+|++.++...+.
T Consensus 400 l~~~~IPISL~Vtleivk~~qa~~I~~D~~m~~~~~~~~~~vr~snl~EeLGqV~yIfSDKTGTLT~N~M~fk~~~i~g~ 479 (1178)
T PLN03190 400 VFQIMIPISLYISMELVRVGQAYFMIRDDQMYDEASNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGV 479 (1178)
T ss_pred HHHhhcceeeeeeHHHHHHHHHHHHHhhhhcccccCCCcceeccCcchhhhccceEEEEcCCCccccceEEEEEEEECCE
Confidence 5557899999999999996655555443 267999999999999999999999999999999999988665
Q ss_pred CCCCCC----------------CC-CCCC--------------CCC-H-----HHHHH-HHHH--h-----c--------
Q 002354 597 LTDPNS----------------KQ-NPIH--------------PLS-E-----TEILK-FAAG--V-----E-------- 623 (932)
Q Consensus 597 ~~~~~~----------------~~-~~~~--------------~~~-~-----~~ll~-laa~--~-----e-------- 623 (932)
.|+... +. .+.. +.+ + .+++. ++-+ + +
T Consensus 480 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fl~~lalChtv~~~~~~~~~~~~~~ 559 (1178)
T PLN03190 480 DYSDGRTPTQNDHAGYSVEVDGKILRPKMKVKVDPQLLELSKSGKDTEEAKHVHDFFLALAACNTIVPIVVDDTSDPTVK 559 (1178)
T ss_pred EcccccccchhhhhccccccccccccccccccCCHHHHhhhhccccchhhHHHHHHHHHHHhcCCceeeccCCCCCcccc
Confidence 443110 00 0000 000 0 12222 2211 1 1
Q ss_pred ---ccCCCcHHHHHHHHHHhcCCccccccCC-----------C------eEEecCCeeEEE-Ec---C--eEEEeecHHH
Q 002354 624 ---SNTVHPIGKAIVEAAEFSNCQNVKVADG-----------T------FIEEPGSGTVAI-IE---D--RKVSVGTIDW 677 (932)
Q Consensus 624 ---~~s~hPi~~Ai~~~a~~~~~~~~~~~~~-----------~------~~~~~g~g~~~~-i~---~--~~~~~Gs~~~ 677 (932)
..+.+|.+.|+++++...|+........ . +.+.+.+..+.+ +. + ..++||+++.
T Consensus 560 ~~~Y~a~SPdE~ALv~~a~~~G~~l~~r~~~~i~i~~~~~~~~~~il~~~pF~S~rKrMSvIv~~~~~~~~l~~KGA~e~ 639 (1178)
T PLN03190 560 LMDYQGESPDEQALVYAAAAYGFMLIERTSGHIVIDIHGERQRFNVLGLHEFDSDRKRMSVILGCPDKTVKVFVKGADTS 639 (1178)
T ss_pred ceEEecCCCcHHHHHHHHHHCCCeEecccCCeEEEeeccceecceeEEEecccccccEEEEEEEcCCCcEEEEEecCcHH
Confidence 1234899999999999888632211111 1 112222222222 21 2 2489999999
Q ss_pred HhhcCCCCch-------hhhHHHHHhCCCeEEEEE--------------------------------------ECCEEEE
Q 002354 678 LRSHGVDTST-------FQEVEMEDLMNQSLVYVG--------------------------------------VDNMLAG 712 (932)
Q Consensus 678 i~~~~~~~~~-------~~~~~~~~~~g~~~~~va--------------------------------------~~~~~lG 712 (932)
|.+.|..... .+..++++.+|.+++.++ .|++++|
T Consensus 640 il~~~~~~~~~~~~~~~~~~l~~~a~~GlRtL~lA~k~l~~~e~~~~~~~~~~a~~~~~~r~~~l~~~~~~iE~dL~~lG 719 (1178)
T PLN03190 640 MFSVIDRSLNMNVIRATEAHLHTYSSLGLRTLVVGMRELNDSEFEQWHFSFEAASTALIGRAALLRKVASNVENNLTILG 719 (1178)
T ss_pred HHHhhcccccchhHHHHHHHHHHHHhcCCceEEEEEEeCCHHHHhhHHHHHHHhhhhhhhhHHHHHhhHHhhhcCcEEEE
Confidence 9988853211 122334667788887765 2668999
Q ss_pred EEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--------------------------------
Q 002354 713 LIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK-------------------------------- 760 (932)
Q Consensus 713 ~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~-------------------------------- 760 (932)
+++++|++|++++++|+.|+++|++++|+|||+..||.+||++|||-.
T Consensus 720 ~~~~~D~lr~~v~~~I~~l~~agi~v~mlTGD~~~tAi~IA~s~~Ll~~~~~~i~i~~~~~~~~~~~l~~~~~~~~~~~~ 799 (1178)
T PLN03190 720 ASAIEDKLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQIIINSNSKESCRKSLEDALVMSKKLTT 799 (1178)
T ss_pred EEEEecCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHhCCCCCCCeeEEecCCchhhHHHHHHHHhhhhhhccc
Confidence 999999999999999999999999999999999999999999777610
Q ss_pred --------------------------------C----------------ceecccChhhHHHHHHHHhhC-CCEEEEEcC
Q 002354 761 --------------------------------D----------------KVLSGVKPNEKKRFINELQND-ENVVAMVGD 791 (932)
Q Consensus 761 --------------------------------~----------------~v~~~~~p~~K~~~v~~l~~~-g~~v~~vGD 791 (932)
+ .++||++|+||.++|+.+|+. ++.|+|+||
T Consensus 800 ~~~~~~~~~~~~~~~~~~~~lVIdG~~L~~~l~~~~~~~f~~l~~~~~~VI~cR~sP~QKa~IV~~vk~~~~~vtlaIGD 879 (1178)
T PLN03190 800 VSGISQNTGGSSAAASDPVALIIDGTSLVYVLDSELEEQLFQLASKCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGD 879 (1178)
T ss_pred cccccccccccccccCCceEEEEEcHHHHHHhhhHHHHHHHHHHHhCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEECC
Confidence 0 268999999999999999987 578999999
Q ss_pred CcccHHHHHhCCeeEEec-CchHHHHhhcCEEEeCCChhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhh
Q 002354 792 GINDAAALASSHIGVAMG-GGVGAASEVASVVLMGNRLSQLLVALE-LSRLTMKTVKQNLWWAFGYNIVGIPIA-AGVLL 868 (932)
Q Consensus 792 g~ND~~al~~A~vgIa~~-~~~~~a~~~ad~vl~~~~~~~i~~~i~-~gR~~~~~i~~nl~~a~~~N~i~i~la-~~~~~ 868 (932)
|.||++||++|||||++. .....|..+||+.+. .|..+.+++- +||..++++.+-+.|.|..|++....- ...++
T Consensus 880 GaNDv~mIq~AdVGIGIsG~EG~qA~~aSDfaI~--~Fr~L~rLLlvHGr~~y~R~s~~i~y~fYKN~~~~~~qf~f~~~ 957 (1178)
T PLN03190 880 GANDVSMIQMADVGVGISGQEGRQAVMASDFAMG--QFRFLVPLLLVHGHWNYQRMGYMILYNFYRNAVFVLVLFWYVLF 957 (1178)
T ss_pred CcchHHHHHhcCeeeeecCchhHHHHHhhccchh--hhHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999873 222378889999995 7888988887 599999999999999999999755443 32222
Q ss_pred ccccccccHHHHH-HHhhhhHHHHHHHhhhh
Q 002354 869 PVTGTMLTPSIAG-ALMGLSSIGVMANSLLL 898 (932)
Q Consensus 869 ~~~g~~l~P~~aa-~~m~~ssl~v~lnsl~l 898 (932)
.|+.-+|+.-. .++..+.+...+.-+.+
T Consensus 958 --~~fSg~~ly~~~~~~~yN~~fTslPii~~ 986 (1178)
T PLN03190 958 --TCFTLTTAINEWSSVLYSVIYTALPTIVV 986 (1178)
T ss_pred --HcCCcHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34334444433 34444444444444333
No 31
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-52 Score=473.36 Aligned_cols=514 Identities=21% Similarity=0.233 Sum_probs=366.7
Q ss_pred HHHHHHhHHHHHhhhccCCCeEEEEEecCCCCcEEEEeCCCccCCCEEEEcC---CCEEeeeEEEEeeeeEEeccccccC
Q 002354 344 QRAKIKATSDMTGLLGILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLP---GDRIPADGVVRAGRSTVDESSFTGE 420 (932)
Q Consensus 344 ~~~~~ka~~~l~~L~~~~p~~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~---Ge~IPaDgvll~G~~~VDES~LTGE 420 (932)
.+++.|+...++.+ ..-|..+.|+|+ ++|+.+..+||.|||+|.|.. ...||||.+|+.|.|.|||+|||||
T Consensus 235 V~Qrm~~lse~R~M-g~kpy~I~v~R~----kKW~~l~seeLlPgDvVSI~r~~ed~~vPCDllLL~GsciVnEaMLtGE 309 (1160)
T KOG0209|consen 235 VKQRMRTLSEFRTM-GNKPYTINVYRN----KKWVKLMSEELLPGDVVSIGRGAEDSHVPCDLLLLRGSCIVNEAMLTGE 309 (1160)
T ss_pred HHHHHHHHHHHHhc-CCCceEEEEEec----CcceeccccccCCCceEEeccCcccCcCCceEEEEecceeechhhhcCC
Confidence 34444554555443 334778888887 489999999999999999987 5689999999999999999999999
Q ss_pred CCceeecCC-----------------Cccccceeee-------------cCcEEEEEEecCCcchHHHHHHHHHHhhcCC
Q 002354 421 PLPVTKIPE-----------------SEVAAGSINL-------------NGTLTVEVRRPGGETAMGDIVRLVEEAQSRE 470 (932)
Q Consensus 421 S~Pv~K~~g-----------------~~V~aGt~v~-------------~G~~~~~V~~tG~~T~~gki~~~v~~a~~~~ 470 (932)
|.|..|.+- ..+|+||.++ +|-+.+.|++||++|..|+++|.+....++-
T Consensus 310 SvPl~KE~Ie~~~~d~~ld~~~d~k~hVlfGGTkivQht~p~~~slk~pDggc~a~VlrTGFeTSQGkLvRtilf~aerv 389 (1160)
T KOG0209|consen 310 SVPLMKESIELRDSDDILDIDRDDKLHVLFGGTKIVQHTPPKKASLKTPDGGCVAYVLRTGFETSQGKLVRTILFSAERV 389 (1160)
T ss_pred CccccccccccCChhhhcccccccceEEEEcCceEEEecCCccccccCCCCCeEEEEEeccccccCCceeeeEEecceee
Confidence 999999761 2489999886 5789999999999999999999888765554
Q ss_pred ChHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcccchhccC-CcHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHH
Q 002354 471 APVQRLADQVSGHFTYGVIALSAATFVFWNLFGAHVLPTAIQYG-GPVSLALQLSCSVLVVACPCALGLATPTAMLVGTS 549 (932)
Q Consensus 471 ~~lq~~~d~~~~~~~~~vl~la~~~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~ai~vLvva~P~aL~la~p~a~~~~~~ 549 (932)
+.-.+ -+.+|+.+.+++|++. .|+.|.... -.+ .+-++-+.-++-++.-.+|+-||+-.++|+-.++.
T Consensus 390 TaNn~----Etf~FILFLlVFAiaA--a~Yvwv~Gs-----kd~~RsrYKL~LeC~LIlTSVvPpELPmELSmAVNsSL~ 458 (1160)
T KOG0209|consen 390 TANNR----ETFIFILFLLVFAIAA--AGYVWVEGS-----KDPTRSRYKLFLECTLILTSVVPPELPMELSMAVNSSLI 458 (1160)
T ss_pred eeccH----HHHHHHHHHHHHHHHh--hheEEEecc-----cCcchhhhheeeeeeEEEeccCCCCCchhhhHHHHHHHH
Confidence 43322 2223333333333332 232221110 011 11233444455667777899999999999999999
Q ss_pred HhhhcCccccCchHHHhcccccEEEecCCCCcccCceEEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHH-----hc-
Q 002354 550 LGATRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLSETEILKFAAG-----VE- 623 (932)
Q Consensus 550 ~~a~~gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ll~laa~-----~e- 623 (932)
.++|.||+|..+-.+.-.|+||++|||||||||+..|.|.++--...... ...+......+.+..+|.+ +|
T Consensus 459 ALak~~vyCTEPFRIPfAGkvdvCCFDKTGTLT~d~lvv~Gvag~~~~~~---~~~~~s~~p~~t~~vlAscHsLv~le~ 535 (1160)
T KOG0209|consen 459 ALAKLGVYCTEPFRIPFAGKVDVCCFDKTGTLTEDDLVVEGVAGLSADEG---ALTPASKAPNETVLVLASCHSLVLLED 535 (1160)
T ss_pred HHHHhceeecCccccccCCceeEEEecCCCccccccEEEEecccccCCcc---cccchhhCCchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999865322111 1111122223334444433 23
Q ss_pred ccCCCcHHHHHHHHHHhcCCccc--cccCCC---------eEEe---cCCeeEEEEcC-------eEEEeecHHHHhhcC
Q 002354 624 SNTVHPIGKAIVEAAEFSNCQNV--KVADGT---------FIEE---PGSGTVAIIED-------RKVSVGTIDWLRSHG 682 (932)
Q Consensus 624 ~~s~hPi~~Ai~~~a~~~~~~~~--~~~~~~---------~~~~---~g~g~~~~i~~-------~~~~~Gs~~~i~~~~ 682 (932)
.-..+|+++|.++...+.-.... ..+..+ +++. ..+.+.+.+++ -...||+||.+++.-
T Consensus 536 ~lVGDPlEKA~l~~v~W~~~k~~~v~p~~~~~~~lkI~~ryhFsSaLKRmsvva~~~~~g~s~k~~~aVKGAPEvi~~ml 615 (1160)
T KOG0209|consen 536 KLVGDPLEKATLEAVGWNLEKKNSVCPREGNGKKLKIIQRYHFSSALKRMSVVASHQGPGSSEKYFVAVKGAPEVIQEML 615 (1160)
T ss_pred cccCChHHHHHHHhcCcccccCcccCCCcCCCcccchhhhhhHHHHHHHHHhhhhcccCCCceEEEEEecCCHHHHHHHH
Confidence 33579999999998765321100 000000 1000 01112222221 125789999998865
Q ss_pred CCCch-h-hhHHHHHhCCCeEEEEEE---------------------CCEEEEEEEecccccHHHHHHHHHHHhCCCeEE
Q 002354 683 VDTST-F-QEVEMEDLMNQSLVYVGV---------------------DNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVY 739 (932)
Q Consensus 683 ~~~~~-~-~~~~~~~~~g~~~~~va~---------------------~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~ 739 (932)
.+... . +...++..+|.+++.+++ |++|.|++.|..++|+|++++|+.|++.+++++
T Consensus 616 ~dvP~dY~~iYk~ytR~GsRVLALg~K~l~~~~~~q~rd~~Re~vEsdLtFaGFlif~CPlK~Ds~~~I~el~~SSH~vv 695 (1160)
T KOG0209|consen 616 RDVPKDYDEIYKRYTRQGSRVLALGYKPLGDMMVSQVRDLKREDVESDLTFAGFLIFSCPLKPDSKKTIKELNNSSHRVV 695 (1160)
T ss_pred HhCchhHHHHHHHHhhccceEEEEecccccccchhhhhhhhhhhhhhcceeeeeEEEeCCCCccHHHHHHHHhccCceEE
Confidence 44332 2 224557788999998775 678999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHcCCCCC----------------------------------------------------------
Q 002354 740 MLSGDKKNSAEYVASLVGIPKD---------------------------------------------------------- 761 (932)
Q Consensus 740 ~~TGd~~~~a~~ia~~~gi~~~---------------------------------------------------------- 761 (932)
|+||||+.||.++|+++||...
T Consensus 696 MITGDnpLTAchVak~v~iv~k~~~vl~~~~~~~~~~~~w~s~d~t~~lp~~p~~~~~~l~~~~dlcitG~~l~~l~~~~ 775 (1160)
T KOG0209|consen 696 MITGDNPLTACHVAKEVGIVEKPTLVLDLPEEGDGNQLEWVSVDGTIVLPLKPGKKKTLLAETHDLCITGSALDHLQATD 775 (1160)
T ss_pred EEeCCCccchheehheeeeeccCceeeccCccCCCceeeEecCCCceeecCCCCccchhhhhhhhhhcchhHHHHHhhhH
Confidence 9999999999999999998210
Q ss_pred ---------ceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHHHHhCCeeEEecCchHHHHh---------------
Q 002354 762 ---------KVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALASSHIGVAMGGGVGAASE--------------- 817 (932)
Q Consensus 762 ---------~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~--------------- 817 (932)
.||||+.|.||..+|..|++.|+.++|||||+||+.||++||||||+=+++...++
T Consensus 776 ~l~~l~~hv~VfARvaP~QKE~ii~tlK~~Gy~TLMCGDGTNDVGALK~AhVGVALL~~~~e~~~~~~~~~~~k~~~~~~ 855 (1160)
T KOG0209|consen 776 QLRRLIPHVWVFARVAPKQKEFIITTLKKLGYVTLMCGDGTNDVGALKQAHVGVALLNNPEESKKDKEKRRKKKLKLEPA 855 (1160)
T ss_pred HHHHhhhheeEEEeeChhhHHHHHHHHHhcCeEEEEecCCCcchhhhhhcccceehhcCChhhhhHHhhhhhhccccCch
Confidence 68999999999999999999999999999999999999999999999644331100
Q ss_pred --------------------------------------------------------hcCEEEeCCChhHHHHHHHHHHHH
Q 002354 818 --------------------------------------------------------VASVVLMGNRLSQLLVALELSRLT 841 (932)
Q Consensus 818 --------------------------------------------------------~ad~vl~~~~~~~i~~~i~~gR~~ 841 (932)
+|.+.-...+.+.|.++|+.||++
T Consensus 856 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~e~l~~i~kdlee~~~~p~vKLGDASiAAPFTsK~asv~~v~~IIrQGRct 935 (1160)
T KOG0209|consen 856 KQTIAANRQNSPRPPVPPAERHNPHAEKTRERLKKILKDLEEDKGDPLVKLGDASIAAPFTSKLASVSSVTHIIRQGRCT 935 (1160)
T ss_pred hhHHHhhhccCCCCCCCCccccChhHHHHHHHHHHHHHHHhhcccCccccccccccccccccccchHHHHHHHHHhcchh
Confidence 111222233678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHH
Q 002354 842 MKTVKQNLWWAFGYNIVGIPIAAGVLLPVTGTMLTPS 878 (932)
Q Consensus 842 ~~~i~~nl~~a~~~N~i~i~la~~~~~~~~g~~l~P~ 878 (932)
+-+.-|-+.+ ++-|.+.-.....++|. -|.-++-.
T Consensus 936 LVtTlQMfKI-LALN~LisAYslSvlyl-dGVKfgD~ 970 (1160)
T KOG0209|consen 936 LVTTLQMFKI-LALNCLISAYSLSVLYL-DGVKFGDT 970 (1160)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhhh-cCceecch
Confidence 9888886665 55677665555555543 34444433
No 32
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-47 Score=421.14 Aligned_cols=501 Identities=20% Similarity=0.241 Sum_probs=369.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccCCCeEEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeee
Q 002354 323 KAFFEEPIMLIAFVLLGKNLEQRAKIKATSDMTGLLGILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPAD 402 (932)
Q Consensus 323 ~~yf~~~~~il~~~llg~~le~~~~~ka~~~l~~L~~~~p~~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaD 402 (932)
..|+.+..+++++.++.+.+|+..+++-++..++ +..+++.++ .....|+++|++||+|.+..+++||||
T Consensus 129 ~ty~~pl~fvl~itl~keavdd~~r~~rd~~~Ns------e~y~~ltr~----~~~~~~Ss~i~vGDvi~v~K~~RVPAD 198 (1051)
T KOG0210|consen 129 STYWGPLGFVLTITLIKEAVDDLKRRRRDRELNS------EKYTKLTRD----GTRREPSSDIKVGDVIIVHKDERVPAD 198 (1051)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhheeeccC----CcccccccccccccEEEEecCCcCCcc
Confidence 4677788899999999999999999887776653 334444332 233349999999999999999999999
Q ss_pred EEEE-----eeeeEEeccccccCCCceeecC-----------------------------------------------CC
Q 002354 403 GVVR-----AGRSTVDESSFTGEPLPVTKIP-----------------------------------------------ES 430 (932)
Q Consensus 403 gvll-----~G~~~VDES~LTGES~Pv~K~~-----------------------------------------------g~ 430 (932)
.+++ +|+|.|-+..|+||+..+.|-| ++
T Consensus 199 milLrTsd~sg~~FiRTDQLDGETDWKLrl~vp~tQ~l~~~~el~~i~v~Ae~P~kdIh~F~Gt~~~~d~~~~~~Lsven 278 (1051)
T KOG0210|consen 199 MILLRTSDKSGSCFIRTDQLDGETDWKLRLPVPRTQHLTEDSELMEISVYAEKPQKDIHSFVGTFTITDSDKPESLSVEN 278 (1051)
T ss_pred eEEEEccCCCCceEEeccccCCcccceeeccchhhccCCcccchheEEEeccCcchhhHhhEEEEEEecCCCCCcccccc
Confidence 9998 5889999999999999887744 24
Q ss_pred ccccceeeecCcEEEEEEecCCcchHHHHHHHHHHhhcCCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcccch
Q 002354 431 EVAAGSINLNGTLTVEVRRPGGETAMGDIVRLVEEAQSREAPVQRLADQVSGHFTYGVIALSAATFVFWNLFGAHVLPTA 510 (932)
Q Consensus 431 ~V~aGt~v~~G~~~~~V~~tG~~T~~gki~~~v~~a~~~~~~lq~~~d~~~~~~~~~vl~la~~~~i~~~~~~~~~~~~~ 510 (932)
.++++|++.+|.+.+.|++||.+|+..- ....++.+-..++..++.+.+++..++++++++....- |
T Consensus 279 tLWanTVvAs~t~~gvVvYTG~dtRsvM---Nts~pr~KvGllelEiN~ltKiL~~~vlvLs~vmv~~~---g------- 345 (1051)
T KOG0210|consen 279 TLWANTVVASGTAIGVVVYTGRDTRSVM---NTSRPRSKVGLLELEINGLTKILFCFVLVLSIVMVAMK---G------- 345 (1051)
T ss_pred eeeeeeeEecCcEEEEEEEecccHHHHh---ccCCcccccceeeeecccHHHHHHHHHHHHHHHHHHhh---c-------
Confidence 5899999999999999999999985421 11123334445667788888888777777776654431 1
Q ss_pred hccCCcHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhhh----cCccccCchHHHhcccccEEEecCCCCcccCce
Q 002354 511 IQYGGPVSLALQLSCSVLVVACPCALGLATPTAMLVGTSLGAT----RGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRP 586 (932)
Q Consensus 511 ~~~~~~~~~~l~~ai~vLvva~P~aL~la~p~a~~~~~~~~a~----~gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~ 586 (932)
.+.+|+..+.+.+.++-..+|..|-+-+-++...-.....+ .|.++|+.+.-|+||++.++.+|||||||+|+|
T Consensus 346 --~~~~wyi~~~RfllLFS~IIPISLRvnlDmaK~~ys~~i~~D~~IpgtvvRSstIPEeLGRIsylLtDKTGTLTqNEM 423 (1051)
T KOG0210|consen 346 --FGSDWYIYIIRFLLLFSSIIPISLRVNLDMAKIVYSWQIEHDKNIPGTVVRSSTIPEELGRISYLLTDKTGTLTQNEM 423 (1051)
T ss_pred --CCCchHHHHHHHHHHHhhhceeEEEEehhHHHhhHhhhcccCCCCCceeeecCCChHHhcceEEEEecCcCccccchh
Confidence 13577888999999999999999988888887666555543 388999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCCC---------------CCCCCC-------CCCC---HHHHHHHHHH--h----c------ccCCCc
Q 002354 587 VVTKVVTSGSLTDPN---------------SKQNPI-------HPLS---ETEILKFAAG--V----E------SNTVHP 629 (932)
Q Consensus 587 ~v~~i~~~~~~~~~~---------------~~~~~~-------~~~~---~~~ll~laa~--~----e------~~s~hP 629 (932)
++.+++..--.+..+ ...+.. .+.+ .+.++.++-+ + | .+...|
T Consensus 424 ~~KKiHLGTv~~s~e~~~eV~~~i~s~~~~~~~~~~~~~~~~k~~~s~rv~~~V~alalCHNVTPv~e~~ge~sYQAaSP 503 (1051)
T KOG0210|consen 424 EFKKIHLGTVAYSAETMDEVSQHIQSLYTPGRNKGKGALSRVKKDMSARVRNAVLALALCHNVTPVFEDDGEVSYQAASP 503 (1051)
T ss_pred eeeeeeeeeeeccHhHHHHHHHHHHHhhCCCcccccccchhhcCcccHHHHHHHHHHHHhccCCcccCCCceEEeecCCC
Confidence 999998653222111 000000 1111 1122222221 1 1 123468
Q ss_pred HHHHHHHHHHhcCCccccccCC------------Ce--------EE-ecCCeeEEEEc--Ce--EEEeecHHHHhhcCCC
Q 002354 630 IGKAIVEAAEFSNCQNVKVADG------------TF--------IE-EPGSGTVAIIE--DR--KVSVGTIDWLRSHGVD 684 (932)
Q Consensus 630 i~~Ai~~~a~~~~~~~~~~~~~------------~~--------~~-~~g~g~~~~i~--~~--~~~~Gs~~~i~~~~~~ 684 (932)
.+-||++..+.-|......+.. ++ .. ....|+..+.+ ++ -|.||+.-.|...- .
T Consensus 504 DEVAiVkwTe~VGl~L~~Rd~~~itL~~~~~~~~~yqIL~vFPFtsEtKRMGIIVr~e~~~evtfylKGAD~VMs~iV-q 582 (1051)
T KOG0210|consen 504 DEVAIVKWTETVGLKLAKRDRHAITLRVPLDDELNYQILQVFPFTSETKRMGIIVRDETTEEVTFYLKGADVVMSGIV-Q 582 (1051)
T ss_pred CeEEEEEeeeecceEEeecccceEEEecCCCcceeEEEEEEeccccccceeeEEEecCCCceEEEEEecchHHHhccc-c
Confidence 8888888776655442211100 11 11 12345555544 22 28899987775432 1
Q ss_pred Cc--hhhhHHHHHhCCCeEEEEEE---------------------------------------CCEEEEEEEecccccHH
Q 002354 685 TS--TFQEVEMEDLMNQSLVYVGV---------------------------------------DNMLAGLIYVEDRIRDD 723 (932)
Q Consensus 685 ~~--~~~~~~~~~~~g~~~~~va~---------------------------------------~~~~lG~i~l~D~lr~~ 723 (932)
++ ..++..+.+.+|.+.+.++. |.+++|+.+.||+++++
T Consensus 583 ~NdWleEE~gNMAREGLRtLVvakK~Ls~~eye~Fe~~y~~A~lSi~dR~~~ma~vv~~~LE~dlelL~LTGVEDkLQ~d 662 (1051)
T KOG0210|consen 583 YNDWLEEECGNMAREGLRTLVVAKKVLSEEEYEAFEEAYNAAKLSISDRDQKMANVVERYLERDLELLGLTGVEDKLQDD 662 (1051)
T ss_pred cchhhhhhhhhhhhhcceEEEEEecccCHHHHHHHHHHHHhhhCccchHHHHHHHHHHHHHHhhhHHhcccChHHHHhhh
Confidence 11 12233335566777777764 67899999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC-------------------------------------------
Q 002354 724 AAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK------------------------------------------- 760 (932)
Q Consensus 724 ~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~------------------------------------------- 760 (932)
++.+++.||++||++||+|||..+||..+|+..++..
T Consensus 663 Vk~tLElLRNAgikiWMLTGDKlETA~ciAkSs~L~sR~q~ihv~~~v~sr~dah~eL~~lR~k~~~aLvi~G~Sl~~cl 742 (1051)
T KOG0210|consen 663 VKPTLELLRNAGIKIWMLTGDKLETAICIAKSSRLFSRGQYIHVIRSVTSRGDAHNELNNLRRKTDCALVIDGESLEFCL 742 (1051)
T ss_pred hHhHHHHHhhcCcEEEEEcCcchhheeeeehhccceecCceEEEEEecCCchHHHHHHHHhhcCCCcEEEEcCchHHHHH
Confidence 9999999999999999999999999999999999831
Q ss_pred ---------------CceecccChhhHHHHHHHHhhC-CCEEEEEcCCcccHHHHHhCCeeEEe-cCchHHHHhhcCEEE
Q 002354 761 ---------------DKVLSGVKPNEKKRFINELQND-ENVVAMVGDGINDAAALASSHIGVAM-GGGVGAASEVASVVL 823 (932)
Q Consensus 761 ---------------~~v~~~~~p~~K~~~v~~l~~~-g~~v~~vGDg~ND~~al~~A~vgIa~-~~~~~~a~~~ad~vl 823 (932)
..++||++|+||+++++.+|++ |..|.+||||-||+.|+++||+||++ |+....|.-+||+-+
T Consensus 743 ~yye~Ef~el~~~~~aVv~CRctPtQKA~v~~llq~~t~krvc~IGDGGNDVsMIq~A~~GiGI~gkEGkQASLAADfSI 822 (1051)
T KOG0210|consen 743 KYYEDEFIELVCELPAVVCCRCTPTQKAQVVRLLQKKTGKRVCAIGDGGNDVSMIQAADVGIGIVGKEGKQASLAADFSI 822 (1051)
T ss_pred HHHHHHHHHHHHhcCcEEEEecChhHHHHHHHHHHHhhCceEEEEcCCCccchheeecccceeeecccccccchhccccH
Confidence 1588999999999999999885 78999999999999999999999999 555567778999988
Q ss_pred eCCChhHHHHHHHH-HHHHHHHHHHHHHH
Q 002354 824 MGNRLSQLLVALEL-SRLTMKTVKQNLWW 851 (932)
Q Consensus 824 ~~~~~~~i~~~i~~-gR~~~~~i~~nl~~ 851 (932)
. .+..+.+++-+ ||+.|++--+--+|
T Consensus 823 t--qF~Hv~rLLl~HGR~SYkrsa~laqf 849 (1051)
T KOG0210|consen 823 T--QFSHVSRLLLWHGRNSYKRSAKLAQF 849 (1051)
T ss_pred H--HHHHHHHHhhccccchHHHHHHHHHH
Confidence 6 78889888876 99998775553333
No 33
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=100.00 E-value=1.2e-44 Score=439.12 Aligned_cols=560 Identities=16% Similarity=0.157 Sum_probs=412.7
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 002354 279 FQLILDGVKSLFKGAPNMNTLVGLGAVSSFTVSSLAALVPKLGWKAFFEEPIMLIAFVLLGKNLEQRAKIKATSDMTGLL 358 (932)
Q Consensus 279 ~~~~~~a~~~l~~~~~nmd~Li~l~~~~a~~~s~~~~~~~~~~~~~yf~~~~~il~~~llg~~le~~~~~ka~~~l~~L~ 358 (932)
+.|++..+...++|..|.++|+..-+...- +|- .++.....+.++++.+..+.+.+|++.|++.++.++
T Consensus 45 ~tFlPk~l~eQf~r~aN~yFl~~~il~~ip-~~~-------~~~~~~~~pl~~vl~~t~iKd~~eD~rR~~~D~~iN--- 113 (1151)
T KOG0206|consen 45 FTFLPKNLFEQFHRVANLYFLFIAILQFIP-LSP-------FNPYTTLVPLLFVLGITAIKDAIEDYRRHKQDKEVN--- 113 (1151)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHcCc-ccc-------cCccceeeceeeeehHHHHHHHHhhhhhhhccHHhh---
Confidence 456667777777788899988754433222 221 122334445667788889999999999999998887
Q ss_pred ccCCCeEEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeeeEEEEe-----eeeEEeccccccCCCceeecC-----
Q 002354 359 GILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRA-----GRSTVDESSFTGEPLPVTKIP----- 428 (932)
Q Consensus 359 ~~~p~~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll~-----G~~~VDES~LTGES~Pv~K~~----- 428 (932)
..+++|.++.+ .+++..+++|++||+|.+..+|.+|||.++++ |.|+|++++|+||+..+.|+.
T Consensus 114 ---~~~~~v~~~~~---~~~~~~wk~~~vGd~v~v~~~~~~paD~llLsss~~~~~cyveT~nLDGEtnLK~k~~l~~~~ 187 (1151)
T KOG0206|consen 114 ---NRKVEVLRGDG---CFVEKKWKDVRVGDIVRVEKDEFVPADLLLLSSSDEDGICYVETANLDGETNLKVKQALECTS 187 (1151)
T ss_pred ---cceeEEecCCc---eeeeeccceeeeeeEEEeccCCccccceEEecCCCCCceeEEEEeecCCccccceeeehhhhh
Confidence 45788887642 38899999999999999999999999999994 679999999999999988743
Q ss_pred ------------------------------------------CCccccceeeecCc-EEEEEEecCCcchHHHHHHHHHH
Q 002354 429 ------------------------------------------ESEVAAGSINLNGT-LTVEVRRPGGETAMGDIVRLVEE 465 (932)
Q Consensus 429 ------------------------------------------g~~V~aGt~v~~G~-~~~~V~~tG~~T~~gki~~~v~~ 465 (932)
.+.++.|+.+.+.. +.+.|+.||.+|.+.+- -..
T Consensus 188 ~~~~~~~~~~~~~~i~cE~p~~~ly~f~g~l~~~~~~~pl~~~~~Llrg~~lrNT~~v~G~vv~tG~dtK~~~n---~~~ 264 (1151)
T KOG0206|consen 188 KLDSEDSLKNFKGWIECEDPNANLYTFVGNLELQGQIYPLSPDNLLLRGSRLRNTEWVYGVVVFTGHDTKLMQN---SGK 264 (1151)
T ss_pred cccccccccccCCceEEcCCcccHhhhhhheeeccCCCCCcHHHcccCCceeccCcEEEEEEEEcCCcchHHHh---cCC
Confidence 11356788888876 89999999999977653 334
Q ss_pred hhcCCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccC---ccc-chhccCC----cHHHHHHHHHHHHHHHhhhcch
Q 002354 466 AQSREAPVQRLADQVSGHFTYGVIALSAATFVFWNLFGAH---VLP-TAIQYGG----PVSLALQLSCSVLVVACPCALG 537 (932)
Q Consensus 466 a~~~~~~lq~~~d~~~~~~~~~vl~la~~~~i~~~~~~~~---~~~-~~~~~~~----~~~~~l~~ai~vLvva~P~aL~ 537 (932)
+..+++++++..++....+..+.+.++++..+...++... ..+ .++.... .....+..++.++...+|..|.
T Consensus 265 ~~~Krs~ier~~n~~i~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~t~~il~~~liPISLy 344 (1151)
T KOG0206|consen 265 PPSKRSRIERKMNKIIILLFVLLILMCLISAIGFAIWTRQDGRHNGEWWYLSPSEAAYAGFVHFLTFIILYQYLIPISLY 344 (1151)
T ss_pred CccccchhhhhhhhhHHHHHHHHHHHHHHHHhhhheeeeecccccCchhhhcCchHHHHHHHHHHHHHhhhhceEEEEEE
Confidence 7788999999999988777777777766665554333221 111 1122211 1234556677777888999999
Q ss_pred hhHHHHHHHHHHHhh----------hcCccccCchHHHhcccccEEEecCCCCcccCceEEEEEEecCCCCCCCCCCC--
Q 002354 538 LATPTAMLVGTSLGA----------TRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQN-- 605 (932)
Q Consensus 538 la~p~a~~~~~~~~a----------~~gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~~-- 605 (932)
+.+.+.-........ .....+|+.+..|+||+|++|+.|||||||+|.|++.+|.+.+..|.......
T Consensus 345 vsiEiik~~qs~fi~~D~~my~~e~d~~~~~rtsnl~eeLGqv~yIfSDKTGTLT~N~M~F~kCsi~g~~yg~~~~~~~~ 424 (1151)
T KOG0206|consen 345 VSIEIVKVLQSIFINNDLDMYDEETDTPAQARTSNLNEELGQVEYIFSDKTGTLTQNSMEFKKCSINGTSYGRNVTEVEA 424 (1151)
T ss_pred EEeeehHHHHHHHcchHHHhhhccCCCccccccCCchhhhcceeEEEEcCcCccccceeeeecccccCcccccCCChhhc
Confidence 998887766654442 34788899999999999999999999999999999999999887665432110
Q ss_pred ----------------C---------C-------CCCCHHHHHHHHHH--------------hcccCCCcHHHHHHHHHH
Q 002354 606 ----------------P---------I-------HPLSETEILKFAAG--------------VESNTVHPIGKAIVEAAE 639 (932)
Q Consensus 606 ----------------~---------~-------~~~~~~~ll~laa~--------------~e~~s~hPi~~Ai~~~a~ 639 (932)
. . ......+.....+. +......|.+.|+++.|+
T Consensus 425 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~f~~~la~chtv~~e~~~~~~~~~Y~A~SPDE~AlV~aAr 504 (1151)
T KOG0206|consen 425 ALAKRSGGDVNEHKIKGFTFEDSRLVDGLWSSEPQAEDILEFFRALALCHTVIPEKDEDSGKLSYEAESPDEAALVEAAR 504 (1151)
T ss_pred ccCccccccccccccccceeccchhhccccccccCcchHHHHhhHHhccceeeeccCCCccceeeecCCCcHHHHHHHHH
Confidence 0 0 00011122222221 122346899999999999
Q ss_pred hcCCccccccCCCeEEecCCe-------------------eEEEEc---C--eEEEeecHHHHhhcCCCCc-h-----hh
Q 002354 640 FSNCQNVKVADGTFIEEPGSG-------------------TVAIIE---D--RKVSVGTIDWLRSHGVDTS-T-----FQ 689 (932)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~g~g-------------------~~~~i~---~--~~~~~Gs~~~i~~~~~~~~-~-----~~ 689 (932)
..|+............. ..| ++..+. + ..|+||+...|.++..... . .+
T Consensus 505 ~~gf~f~~Rt~~~vti~-~~g~~~~y~lL~iLeF~S~RKRMSVIVR~p~g~i~LycKGADsvI~erL~~~~~~~~e~T~~ 583 (1151)
T KOG0206|consen 505 ELGFVFLGRTPDSVTIR-ELGVEETYELLNVLEFNSTRKRMSVIVRDPDGRILLYCKGADSVIFERLSKNGEKLREKTQE 583 (1151)
T ss_pred hcCceeeeccCceEEEe-ccccceeEEEEEEeccccccceeEEEEEcCCCcEEEEEcCcchhhHhhhhhcchHHHHHHHH
Confidence 98876543332222111 222 222221 1 2389999999877655311 1 11
Q ss_pred hHHHHHhCCCeEEEEEE--------------------------------------CCEEEEEEEecccccHHHHHHHHHH
Q 002354 690 EVEMEDLMNQSLVYVGV--------------------------------------DNMLAGLIYVEDRIRDDAAHVVNSL 731 (932)
Q Consensus 690 ~~~~~~~~g~~~~~va~--------------------------------------~~~~lG~i~l~D~lr~~~~~~i~~L 731 (932)
..++++.+|.+.+++++ |+.++|..++||+++++++++|+.|
T Consensus 584 Hl~~yA~eGLRTLc~A~r~l~e~eY~~w~~~~~~A~ts~~~Re~~L~e~ae~iEk~L~LLGATAIEDkLQdgVPetI~~L 663 (1151)
T KOG0206|consen 584 HLEEYATEGLRTLCLAYRELDEEEYEEWNERYNEAKTSLTDREELLDEVAEEIEKDLILLGATAIEDKLQDGVPETIAKL 663 (1151)
T ss_pred HHHHHHhhhhhHhhhhhhccCHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHhcchhhcceeeechhccCchHHHHHH
Confidence 23346677888888764 6789999999999999999999999
Q ss_pred HhCCCeEEEEcCCCHHHHHHHHHHcCCCC-----------------------------------------------C---
Q 002354 732 SSQGIGVYMLSGDKKNSAEYVASLVGIPK-----------------------------------------------D--- 761 (932)
Q Consensus 732 ~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~-----------------------------------------------~--- 761 (932)
+++|||+||+|||..+||.+|+..|++.. .
T Consensus 664 ~~AGIKIWVLTGDK~ETAiNIg~sC~Ll~~~m~~i~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~aL 743 (1151)
T KOG0206|consen 664 AQAGIKIWVLTGDKQETAINIGYSCRLLRQDMKLIIINTETSEELSSLDATAALKETLLRKFTEELEEAKLEHSEKPFAL 743 (1151)
T ss_pred HHcCCEEEEEcCcHHHHHHHHHHhhcCCCCCceEEEEecCChhhhcchhhHHHHHHHHHHhhhHHHHHHhhccCcCCceE
Confidence 99999999999999999999999999721 0
Q ss_pred ----------------------------ceecccChhhHHHHHHHHhh-CCCEEEEEcCCcccHHHHHhCCeeEEec-Cc
Q 002354 762 ----------------------------KVLSGVKPNEKKRFINELQN-DENVVAMVGDGINDAAALASSHIGVAMG-GG 811 (932)
Q Consensus 762 ----------------------------~v~~~~~p~~K~~~v~~l~~-~g~~v~~vGDg~ND~~al~~A~vgIa~~-~~ 811 (932)
.++||++|.||+.+|+..++ .+..+++||||.||++|++.|||||+++ ..
T Consensus 744 VIDGktl~~aL~~~~~~~Fl~la~~C~sViCCR~sPlQKA~Vv~lVk~~~~~~TLAIGDGANDVsMIQ~AhVGVGIsG~E 823 (1151)
T KOG0206|consen 744 VIDGKTLAYALEDELRKKFLELAKRCKSVICCRVSPLQKALVVKLVKKGLKAVTLAIGDGANDVSMIQEAHVGVGISGQE 823 (1151)
T ss_pred EEECHHHHhhhCchhhHHHHHHHHhcCEEEEccCCHHHHHHHHHHHHhcCCceEEEeeCCCccchheeeCCcCeeeccch
Confidence 57899999999999999974 5789999999999999999999999996 55
Q ss_pred hHHHHhhcCEEEeCCChhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002354 812 VGAASEVASVVLMGNRLSQLLVALE-LSRLTMKTVKQNLWWAFGYNIVGIP 861 (932)
Q Consensus 812 ~~~a~~~ad~vl~~~~~~~i~~~i~-~gR~~~~~i~~nl~~a~~~N~i~i~ 861 (932)
-..|..++|+-+. .+.-+.+++- +||..+.++.+.+.+.|..|+....
T Consensus 824 GmQAvmsSD~AIa--qFrfL~rLLLVHGhW~Y~R~a~~ilyfFYKNi~f~~ 872 (1151)
T KOG0206|consen 824 GMQAVMSSDFAIA--QFRFLERLLLVHGHWSYIRLAKMILYFFYKNIAFTF 872 (1151)
T ss_pred hhhhhhcccchHH--HHHHHhhhheeecceeHHHHHHHHHHHHHHHHHHHH
Confidence 5677788998886 4554544443 5999999999999999999987543
No 34
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=100.00 E-value=1.4e-34 Score=307.70 Aligned_cols=223 Identities=28% Similarity=0.496 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhhccCCCe-EEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeeeEEEEe-e
Q 002354 331 MLIAFVLLGKNLEQRAKIKATSDMTGLLGILPSK-ARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRA-G 408 (932)
Q Consensus 331 ~il~~~llg~~le~~~~~ka~~~l~~L~~~~p~~-~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll~-G 408 (932)
+++++++++.+++.+.++|+.+.++++.+..+++ ++|+|+ |+++++++++|+|||+|.+++||++||||+|++ |
T Consensus 1 ~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~----~~~~~i~~~~L~~GDiI~l~~g~~vPaD~~ll~~g 76 (230)
T PF00122_consen 1 VILFLILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVIRD----GRWQKIPSSELVPGDIIILKAGDIVPADGILLESG 76 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEEET----TEEEEEEGGGT-TTSEEEEETTEBESSEEEEEESS
T ss_pred CEEEEhHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEEec----cccccchHhhccceeeeecccccccccCccceecc
Confidence 4677889999999999999999999999988887 888877 589999999999999999999999999999999 9
Q ss_pred eeEEeccccccCCCceeec-----CCCccccceeeecCcEEEEEEecCCcchHHHHHHHHHHhhcCCChHHHHHHHHHhh
Q 002354 409 RSTVDESSFTGEPLPVTKI-----PESEVAAGSINLNGTLTVEVRRPGGETAMGDIVRLVEEAQSREAPVQRLADQVSGH 483 (932)
Q Consensus 409 ~~~VDES~LTGES~Pv~K~-----~g~~V~aGt~v~~G~~~~~V~~tG~~T~~gki~~~v~~a~~~~~~lq~~~d~~~~~ 483 (932)
.+.||||.+|||+.|+.|. .++.+++||.+.+|.+.++|++||.+|..+++.+.+.+++.+++++++..+++..+
T Consensus 77 ~~~vd~s~ltGes~pv~k~~~~~~~~~~i~~Gs~v~~g~~~~~Vi~tG~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (230)
T PF00122_consen 77 SAYVDESALTGESEPVKKTPLPLNPGNIIFAGSIVVSGWGIGVVIATGSDTKLGRILQLVSKSESKKSPLERKLNKIAKI 156 (230)
T ss_dssp EEEEECHHHHSBSSEEEESSSCCCTTTEE-TTEEEEEEEEEEEEEE-GGGSHHHHHHHHHHTSCSS-THHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccchhhccccccccccccccceeeecccccccccccccccccchhhhhhhHHHHHH
Confidence 9999999999999999999 99999999999999999999999999999999999999888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcccchhccCCcHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhhhcCccccCchH
Q 002354 484 FTYGVIALSAATFVFWNLFGAHVLPTAIQYGGPVSLALQLSCSVLVVACPCALGLATPTAMLVGTSLGATRGLLLRGGNI 563 (932)
Q Consensus 484 ~~~~vl~la~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ai~vLvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~ 563 (932)
+.+++++++++++++|++. ....+|...+..++++++++|||+|++++|+++..+..+++++|+++|++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~i~~l~~~~P~~l~~~~~~~~~~~~~~~~~~~i~v~~~~a 227 (230)
T PF00122_consen 157 LIIIILAIAILVFIIWFFN---------DSGISFFKSFLFAISLLIVLIPCALPLALPLSLAIAARRLAKNGIIVKNLSA 227 (230)
T ss_dssp HHHHHHHHHHHHHHHCHTG---------STTCHCCHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHTTEEESSTTH
T ss_pred HHhcccccchhhhccceec---------ccccccccccccccceeeeecccceeehHHHHHHHHHHHHHHCCEEEeCccc
Confidence 9999999888888776653 1223557789999999999999999999999999999999999999999999
Q ss_pred HHh
Q 002354 564 LEK 566 (932)
Q Consensus 564 lE~ 566 (932)
+|.
T Consensus 228 ~E~ 230 (230)
T PF00122_consen 228 LEA 230 (230)
T ss_dssp HHH
T ss_pred ccC
Confidence 995
No 35
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.96 E-value=8.7e-29 Score=259.60 Aligned_cols=210 Identities=34% Similarity=0.510 Sum_probs=177.8
Q ss_pred ccEEEecCCCCcccCceEEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCCcccccc
Q 002354 570 VNTVVFDKTGTLTIGRPVVTKVVTSGSLTDPNSKQNPIHPLSETEILKFAAGVESNTVHPIGKAIVEAAEFSNCQNVKVA 649 (932)
Q Consensus 570 v~~I~fDKTGTLT~g~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ll~laa~~e~~s~hPi~~Ai~~~a~~~~~~~~~~~ 649 (932)
|++||||||||||+|++.+ . . .....++.++...+..+.||++.++..++...... ..
T Consensus 1 i~~i~fDktGTLt~~~~~v-----~-------------~-~~~~~~~~~~~~~~~~s~~p~~~~~~~~~~~~~~~-~~-- 58 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMSV-----A-------------P-PSNEAALAIAAALEQGSEHPIGKAIVEFAKNHQWS-KS-- 58 (215)
T ss_dssp ESEEEEECCTTTBESHHEE-----E-------------S-CSHHHHHHHHHHHHCTSTSHHHHHHHHHHHHHHHH-SC--
T ss_pred CeEEEEecCCCcccCeEEE-----E-------------e-ccHHHHHHHHHHhhhcCCCcchhhhhhhhhhccch-hh--
Confidence 6899999999999999999 1 1 45688999999999999999999999988763222 11
Q ss_pred CCCeEEecCCeeEEEEcCeEEEeecHHHHhhcCCCCc-hhhhHHHHHhCCCeEEEEEECCEEEEEEEecccccHHHHHHH
Q 002354 650 DGTFIEEPGSGTVAIIEDRKVSVGTIDWLRSHGVDTS-TFQEVEMEDLMNQSLVYVGVDNMLAGLIYVEDRIRDDAAHVV 728 (932)
Q Consensus 650 ~~~~~~~~g~g~~~~i~~~~~~~Gs~~~i~~~~~~~~-~~~~~~~~~~~g~~~~~va~~~~~lG~i~l~D~lr~~~~~~i 728 (932)
...+...+++|+...+++. +. |+++++.+.+.... ...........+...++++.+..++|.+.+.|++|++++++|
T Consensus 59 ~~~~~~~~~~~~~~~~~~~-~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l 136 (215)
T PF00702_consen 59 LESFSEFIGRGISGDVDGI-YL-GSPEWIHELGIRVISPDLVEEIQESQGRTVIVLAVNLIFLGLFGLRDPLRPGAKEAL 136 (215)
T ss_dssp CEEEEEETTTEEEEEEHCH-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEESHEEEEEEEEEEEBHTTHHHHH
T ss_pred hhhheeeeecccccccccc-cc-ccchhhhhccccccccchhhhHHHhhCCcccceeecCeEEEEEeecCcchhhhhhhh
Confidence 3567888999999999888 55 99999887654321 111111223445667788889999999999999999999999
Q ss_pred HHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceeccc--ChhhH--HHHHHHHhhCCCEEEEEcCCcccHHHHHhCC
Q 002354 729 NSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGV--KPNEK--KRFINELQNDENVVAMVGDGINDAAALASSH 803 (932)
Q Consensus 729 ~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~~--~p~~K--~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~ 803 (932)
+.|+++|++++|+|||+..++..+++++||....+++++ +|++| .++++.|+.+++.|+|||||.||++|+++||
T Consensus 137 ~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 137 QELKEAGIKVAILTGDNESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPGEVAMVGDGVNDAPALKAAG 215 (215)
T ss_dssp HHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGGGEEEEESSGGHHHHHHHSS
T ss_pred hhhhccCcceeeeeccccccccccccccccccccccccccccccchhHHHHHHHHhcCCCEEEEEccCHHHHHHHHhCc
Confidence 999999999999999999999999999999866799999 99999 9999999977789999999999999999997
No 36
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=99.67 E-value=8.9e-16 Score=140.27 Aligned_cols=126 Identities=29% Similarity=0.465 Sum_probs=113.2
Q ss_pred ECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecccChhhHHHHHHHHhhCCCE
Q 002354 706 VDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENV 785 (932)
Q Consensus 706 ~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~ 785 (932)
.-++..+.++-.-++=+++.++|++|++. +++++.|||...+..+.|+-.||+.+++++...|+.|.++++.|++.+++
T Consensus 17 ~~~~v~~tiatgGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~~~rv~a~a~~e~K~~ii~eLkk~~~k 95 (152)
T COG4087 17 KAGKVLYTIATGGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIPVERVFAGADPEMKAKIIRELKKRYEK 95 (152)
T ss_pred ecceEEEEEccCcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCceeeeecccCHHHHHHHHHHhcCCCcE
Confidence 34567788888888999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCcccHHHHHhCCeeEEe-c--CchHHHHhhcCEEEeCCChhHHHHH
Q 002354 786 VAMVGDGINDAAALASSHIGVAM-G--GGVGAASEVASVVLMGNRLSQLLVA 834 (932)
Q Consensus 786 v~~vGDg~ND~~al~~A~vgIa~-~--~~~~~a~~~ad~vl~~~~~~~i~~~ 834 (932)
|.|||||.||.+||+.||+||.. + +...-+.++||+|+. ++..+.++
T Consensus 96 ~vmVGnGaND~laLr~ADlGI~tiq~e~v~~r~l~~ADvvik--~i~e~ldl 145 (152)
T COG4087 96 VVMVGNGANDILALREADLGICTIQQEGVPERLLLTADVVLK--EIAEILDL 145 (152)
T ss_pred EEEecCCcchHHHhhhcccceEEeccCCcchHHHhhchhhhh--hHHHHHHH
Confidence 99999999999999999999877 3 566778899999985 45444443
No 37
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.28 E-value=1.3e-11 Score=102.85 Aligned_cols=62 Identities=34% Similarity=0.561 Sum_probs=58.6
Q ss_pred EEEecCCCChhhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeCCCccccchhhhhhHHHHHHHHHhcCcc
Q 002354 129 ILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAKVIPNWQRQLGEALAKHLTSCGFK 198 (932)
Q Consensus 129 ~l~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~~~~~~~~~~~~~~~~~i~~~i~~~Gy~ 198 (932)
+|.|+||+|++|+.+|+++|.++|||.++++|+.++++.|.|+++..++ ++|.++|+++||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~--------~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSI--------EKIIEAIEKAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCH--------HHHHHHHHHTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCH--------HHHHHHHHHhCcC
Confidence 5899999999999999999999999999999999999999999887666 8899999999995
No 38
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.22 E-value=4e-11 Score=102.41 Aligned_cols=68 Identities=35% Similarity=0.462 Sum_probs=62.6
Q ss_pred cEEEEEecCCCChhhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeCCCccccchhhhhhHHHHHHHHHhcCccccc
Q 002354 126 DVIILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAKVIPNWQRQLGEALAKHLTSCGFKSSL 201 (932)
Q Consensus 126 ~~~~l~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~~~~~~~~~~~~~~~~~i~~~i~~~Gy~~~~ 201 (932)
....|+|+||+|++|+..|+++|++++||.+++||+..+++.|.+|+...+. +++.++++++||++..
T Consensus 2 ~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~--------~~i~~ai~~aGy~~~~ 69 (71)
T COG2608 2 MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDI--------EAIIEAIEDAGYKVEE 69 (71)
T ss_pred ceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCH--------HHHHHHHHHcCCCeee
Confidence 3578999999999999999999999999999999999999999999976665 8999999999998753
No 39
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.18 E-value=1.6e-10 Score=126.00 Aligned_cols=134 Identities=21% Similarity=0.330 Sum_probs=103.0
Q ss_pred eEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--C----------------
Q 002354 700 SLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--D---------------- 761 (932)
Q Consensus 700 ~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~---------------- 761 (932)
..+++..||+++.- ...+.+.++++|++|+++|++++++||++...+..+.+++|++. .
T Consensus 4 kli~~DlDGTLl~~---~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~I~~NGa~i~~~~~~ 80 (270)
T PRK10513 4 KLIAIDMDGTLLLP---DHTISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHMEQPGDYCITNNGALVQKAADG 80 (270)
T ss_pred EEEEEecCCcCcCC---CCccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCCCCCCeEEEcCCeEEEECCCC
Confidence 46777789998842 44699999999999999999999999999999999999999731 0
Q ss_pred ---------------------------------ceecc----------------c-----------------------Ch
Q 002354 762 ---------------------------------KVLSG----------------V-----------------------KP 769 (932)
Q Consensus 762 ---------------------------------~v~~~----------------~-----------------------~p 769 (932)
.++.. . .+
T Consensus 81 ~~i~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 160 (270)
T PRK10513 81 ETVAQTALSYDDYLYLEKLSREVGVHFHALDRNTLYTANRDISYYTVHESFLTGIPLVFREVEKMDPNLQFPKVMMIDEP 160 (270)
T ss_pred CEEEecCCCHHHHHHHHHHHHHcCCcEEEEECCEEEEecCCcchhHHHhhhhccCCccccchhhccccCCceEEEEeCCH
Confidence 01100 0 00
Q ss_pred hhHHHHHHHHhhC--------------------------------------CCEEEEEcCCcccHHHHHhCCeeEEecCc
Q 002354 770 NEKKRFINELQND--------------------------------------ENVVAMVGDGINDAAALASSHIGVAMGGG 811 (932)
Q Consensus 770 ~~K~~~v~~l~~~--------------------------------------g~~v~~vGDg~ND~~al~~A~vgIa~~~~ 811 (932)
++..++.+.+.+. ...|+++||+.||.+||+.|++|+||+||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~eI~~~gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~NA 240 (270)
T PRK10513 161 EILDAAIARIPAEVKERYTVLKSAPYFLEILDKRVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMGNA 240 (270)
T ss_pred HHHHHHHHHhHHHhcCcEEEEEecCeeEEEeCCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEecCc
Confidence 0001111122110 13488999999999999999999999999
Q ss_pred hHHHHhhcCEEEeCCChhHHHHHHH
Q 002354 812 VGAASEVASVVLMGNRLSQLLVALE 836 (932)
Q Consensus 812 ~~~a~~~ad~vl~~~~~~~i~~~i~ 836 (932)
.+.+|+.||+|+.+++-++|.++|+
T Consensus 241 ~~~vK~~A~~vt~~n~~dGva~~i~ 265 (270)
T PRK10513 241 IPSVKEVAQFVTKSNLEDGVAFAIE 265 (270)
T ss_pred cHHHHHhcCeeccCCCcchHHHHHH
Confidence 9999999999999999999999886
No 40
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.18 E-value=1.4e-10 Score=123.24 Aligned_cols=133 Identities=23% Similarity=0.275 Sum_probs=102.9
Q ss_pred eEEEEEECCEEEEEEEecc-cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCc----------------
Q 002354 700 SLVYVGVDNMLAGLIYVED-RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDK---------------- 762 (932)
Q Consensus 700 ~~~~va~~~~~lG~i~l~D-~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~---------------- 762 (932)
..++...||+++- .| .+.+.+.++|++|++.|++++++||++...+..+.+++|++...
T Consensus 4 kli~~DlDGTLl~----~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~~~~~~ 79 (230)
T PRK01158 4 KAIAIDIDGTITD----KDRRLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSGPVIAENGGVISVGFDGKR 79 (230)
T ss_pred eEEEEecCCCcCC----CCCccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCcEEEecCeEEEEcCCCCE
Confidence 4677778888873 33 48899999999999999999999999999999999999985210
Q ss_pred -------------------------eecc------------------------------------------cChh--hHH
Q 002354 763 -------------------------VLSG------------------------------------------VKPN--EKK 773 (932)
Q Consensus 763 -------------------------v~~~------------------------------------------~~p~--~K~ 773 (932)
.+.. +.|. .|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ei~~~~~~Kg 159 (230)
T PRK01158 80 IFLGDIEECEKAYSELKKRFPEASTSLTKLDPDYRKTEVALRRTVPVEEVRELLEELGLDLEIVDSGFAIHIKSPGVNKG 159 (230)
T ss_pred EEEcchHHHHHHHHHHHHhccccceeeecCCcccccceeeecccccHHHHHHHHHHcCCcEEEEecceEEEEeeCCCChH
Confidence 0000 0000 022
Q ss_pred HHHHHHhhC----CCEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhhcCEEEeCCChhHHHHHHH
Q 002354 774 RFINELQND----ENVVAMVGDGINDAAALASSHIGVAMGGGVGAASEVASVVLMGNRLSQLLVALE 836 (932)
Q Consensus 774 ~~v~~l~~~----g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl~~~~~~~i~~~i~ 836 (932)
.-++.+.++ ...++++||+.||.+|++.|++|+||+|+.+.+|+.||+|+.+++-++|.++++
T Consensus 160 ~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na~~~vk~~a~~v~~~n~~~Gv~~~l~ 226 (230)
T PRK01158 160 TGLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFGVAVANADEELKEAADYVTEKSYGEGVAEAIE 226 (230)
T ss_pred HHHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCceEEecCccHHHHHhcceEecCCCcChHHHHHH
Confidence 222222211 235899999999999999999999999999999999999999999999999886
No 41
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.15 E-value=1.5e-10 Score=121.89 Aligned_cols=132 Identities=21% Similarity=0.239 Sum_probs=104.1
Q ss_pred EEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCc------------------
Q 002354 701 LVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDK------------------ 762 (932)
Q Consensus 701 ~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~------------------ 762 (932)
.+++..||+++. =..++.+.+.++|++|++.|++++++||++...+..++++++++...
T Consensus 3 ~v~~DlDGTLl~---~~~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~~~i~~NGa~i~~~~~~~~~~ 79 (215)
T TIGR01487 3 LVAIDIDGTLTE---PNRMISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSGPVVAENGGVIFYNKEDIFLA 79 (215)
T ss_pred EEEEecCCCcCC---CCcccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCCcEEEccCcEEEeCCCcEEEe
Confidence 567778888874 23358999999999999999999999999999999999999985210
Q ss_pred ---------------------------------------------------------eecccC--hhhHHHHHHHHhhC-
Q 002354 763 ---------------------------------------------------------VLSGVK--PNEKKRFINELQND- 782 (932)
Q Consensus 763 ---------------------------------------------------------v~~~~~--p~~K~~~v~~l~~~- 782 (932)
.+..+. .-+|...++.+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~ 159 (215)
T TIGR01487 80 NMEEEWFLDEEKKKRFPRDRLSNEYPRASLVIMREGKDVDEVREIIKERGLNLVDSGFAIHIMKKGVDKGVGVEKLKELL 159 (215)
T ss_pred cccchhhHHHhhhhhhhhhhcccccceeEEEEecCCccHHHHHHHHHhCCeEEEecCceEEEecCCCChHHHHHHHHHHh
Confidence 000111 12344444444332
Q ss_pred ---CCEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhhcCEEEeCCChhHHHHHH
Q 002354 783 ---ENVVAMVGDGINDAAALASSHIGVAMGGGVGAASEVASVVLMGNRLSQLLVAL 835 (932)
Q Consensus 783 ---g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl~~~~~~~i~~~i 835 (932)
...++++||+.||.+|++.|++|+||+|+.+.+|+.||+|+.+++-++|.+++
T Consensus 160 ~i~~~~~i~iGDs~ND~~ml~~ag~~vam~na~~~~k~~A~~v~~~~~~~Gv~~~l 215 (215)
T TIGR01487 160 GIKPEEVAAIGDSENDIDLFRVVGFKVAVANADDQLKEIADYVTSNPYGEGVVEVL 215 (215)
T ss_pred CCCHHHEEEECCCHHHHHHHHhCCCeEEcCCccHHHHHhCCEEcCCCCCchhhhhC
Confidence 23589999999999999999999999999999999999999988888888753
No 42
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.15 E-value=1.6e-10 Score=126.20 Aligned_cols=134 Identities=16% Similarity=0.180 Sum_probs=101.6
Q ss_pred eEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC------------------
Q 002354 700 SLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD------------------ 761 (932)
Q Consensus 700 ~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~------------------ 761 (932)
..+++..||+++. -...+.+.++++|++|+++|++++++||++...+..+.+++|++..
T Consensus 3 kli~~DlDGTLl~---~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~I~~~~~~~l~ 79 (272)
T PRK15126 3 RLAAFDMDGTLLM---PDHHLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLDAYLITGNGTRVHSLEGELLH 79 (272)
T ss_pred cEEEEeCCCcCcC---CCCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCcEEecCCcEEEcCCCCEEE
Confidence 4567778888874 2346999999999999999999999999999999999999998421
Q ss_pred -----------------------------ceecc------------------------------------cChhhHHHHH
Q 002354 762 -----------------------------KVLSG------------------------------------VKPNEKKRFI 776 (932)
Q Consensus 762 -----------------------------~v~~~------------------------------------~~p~~K~~~v 776 (932)
.++.. ..+++-.++.
T Consensus 80 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~~~~~~~~ 159 (272)
T PRK15126 80 RQDLPADVAELVLHQQWDTRASMHVFNDDGWFTGKEIPALLQAHVYSGFRYQLIDLKRLPAHGVTKICFCGDHDDLTRLQ 159 (272)
T ss_pred eecCCHHHHHHHHHHhhhcCcEEEEEcCCeEEecCCcHHHHHHHHhcCCceEEecHHHccccCceEEEEECCHHHHHHHH
Confidence 00000 0011101111
Q ss_pred HHHhh----------------------------------C----CCEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhh
Q 002354 777 NELQN----------------------------------D----ENVVAMVGDGINDAAALASSHIGVAMGGGVGAASEV 818 (932)
Q Consensus 777 ~~l~~----------------------------------~----g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ 818 (932)
+.+++ . ...|+++||+.||.+||+.|+.||||+|+.+.+|+.
T Consensus 160 ~~l~~~~~~~~~~~~s~~~~~eI~~~g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~Na~~~vK~~ 239 (272)
T PRK15126 160 IQLNEALGERAHLCFSATDCLEVLPVGCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGNAMPQLRAE 239 (272)
T ss_pred HHHHHHhcCCEEEEEcCCcEEEeecCCCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccCChHHHHHh
Confidence 11211 0 134889999999999999999999999999999999
Q ss_pred cCE--EEeCCChhHHHHHHH
Q 002354 819 ASV--VLMGNRLSQLLVALE 836 (932)
Q Consensus 819 ad~--vl~~~~~~~i~~~i~ 836 (932)
||+ |+.+++-++|.++|+
T Consensus 240 A~~~~v~~~n~edGva~~l~ 259 (272)
T PRK15126 240 LPHLPVIGHCRNQAVSHYLT 259 (272)
T ss_pred CCCCeecCCCcchHHHHHHH
Confidence 996 777899999999885
No 43
>PRK10976 putative hydrolase; Provisional
Probab=99.15 E-value=2.1e-10 Score=124.85 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=101.9
Q ss_pred eEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC------------------
Q 002354 700 SLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD------------------ 761 (932)
Q Consensus 700 ~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~------------------ 761 (932)
..+++..||+++- -..++.+.+.++|++|+++|++++++||++...+..+.+++|++..
T Consensus 3 kli~~DlDGTLl~---~~~~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~~i~ 79 (266)
T PRK10976 3 QVVASDLDGTLLS---PDHTLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIKSYMITSNGARVHDTDGNLIF 79 (266)
T ss_pred eEEEEeCCCCCcC---CCCcCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCCeEEEcCCcEEECCCCCEeh
Confidence 4667778898873 2346899999999999999999999999999999999999997420
Q ss_pred ------------------------------ceec-cc------------------------------------ChhhHHH
Q 002354 762 ------------------------------KVLS-GV------------------------------------KPNEKKR 774 (932)
Q Consensus 762 ------------------------------~v~~-~~------------------------------------~p~~K~~ 774 (932)
.++. +. .+++..+
T Consensus 80 ~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ki~~~~~~~~~~~~ 159 (266)
T PRK10976 80 SHNLDRDIASDLFGVVHDNPDIITNVYRDDEWFMNRHRPEEMRFFKEAVFKYQLYEPGLLEPDGVSKVFFTCDSHEKLLP 159 (266)
T ss_pred hhcCCHHHHHHHHHhhcccCCEEEEEEcCCeEEEcCCChHHHHHHHhcCCcceeechhhcccCCceEEEEEcCCHHHHHH
Confidence 0010 00 0111111
Q ss_pred HHHHHhhC--------------------------------------CCEEEEEcCCcccHHHHHhCCeeEEecCchHHHH
Q 002354 775 FINELQND--------------------------------------ENVVAMVGDGINDAAALASSHIGVAMGGGVGAAS 816 (932)
Q Consensus 775 ~v~~l~~~--------------------------------------g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~ 816 (932)
+.+.+++. ...|+++||+.||.+||+.|+.|+||+||.+.+|
T Consensus 160 ~~~~l~~~~~~~~~~~~s~~~~~eI~~~gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~NA~~~vK 239 (266)
T PRK10976 160 LEQAINARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGNAHQRLK 239 (266)
T ss_pred HHHHHHHHhCCcEEEEEeCCceEEEEcCCCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeecCCcHHHH
Confidence 11222210 1348899999999999999999999999999999
Q ss_pred hhcC--EEEeCCChhHHHHHHH
Q 002354 817 EVAS--VVLMGNRLSQLLVALE 836 (932)
Q Consensus 817 ~~ad--~vl~~~~~~~i~~~i~ 836 (932)
+.|| .|+.+++-++|.++++
T Consensus 240 ~~A~~~~v~~~n~edGVa~~l~ 261 (266)
T PRK10976 240 DLLPELEVIGSNADDAVPHYLR 261 (266)
T ss_pred HhCCCCeecccCchHHHHHHHH
Confidence 9988 7888999999999886
No 44
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.13 E-value=3.8e-10 Score=122.73 Aligned_cols=136 Identities=21% Similarity=0.256 Sum_probs=106.0
Q ss_pred CeEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC-----------------
Q 002354 699 QSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD----------------- 761 (932)
Q Consensus 699 ~~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~----------------- 761 (932)
...+++..||+++. =..++.+.++++|+++++.|++++++||++...+..+.++++++..
T Consensus 3 ~kli~~DlDGTLl~---~~~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~i~ 79 (264)
T COG0561 3 IKLLAFDLDGTLLD---SNKTISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDGPLITFNGALIYNGGELLF 79 (264)
T ss_pred eeEEEEcCCCCccC---CCCccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCccEEEeCCeEEecCCcEEe
Confidence 35677777888764 2334999999999999999999999999999999999999998521
Q ss_pred ------------------------cee-----------------------------------------cccChh------
Q 002354 762 ------------------------KVL-----------------------------------------SGVKPN------ 770 (932)
Q Consensus 762 ------------------------~v~-----------------------------------------~~~~p~------ 770 (932)
.++ ....++
T Consensus 80 ~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (264)
T COG0561 80 QKPLSREDVEELLELLEDFQGIALVLYTDDGIYLTKKRGTFAEARIGFANLSPVGREAAELEDNKIIALDKDHEILEELV 159 (264)
T ss_pred eecCCHHHHHHHHHHHHhccCceEEEEeccceeeccCCCcccccccccccccccccchhhcCcceEEEEecChHhHHHHH
Confidence 000 000011
Q ss_pred -----------------------------hHHHHHHHHhh-CC---CEEEEEcCCcccHHHHHhCCeeEEecCchHHHHh
Q 002354 771 -----------------------------EKKRFINELQN-DE---NVVAMVGDGINDAAALASSHIGVAMGGGVGAASE 817 (932)
Q Consensus 771 -----------------------------~K~~~v~~l~~-~g---~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~ 817 (932)
+|..-++.+.+ .| ..|+++||+.||.+||+.|+.||||+|+.+.+++
T Consensus 160 ~~l~~~~~~~~~~~~~s~~~~lei~~~g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam~Na~~~~k~ 239 (264)
T COG0561 160 EALRKRFPDLGLTVSSSGPISLDITPKGVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAMGNADEELKE 239 (264)
T ss_pred HHHhhhccccceEEEEcCCceEEEecCCCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeeccCCCHHHHh
Confidence 23333333322 12 2499999999999999999999999999999999
Q ss_pred hcCEEEeCCChhHHHHHHHH
Q 002354 818 VASVVLMGNRLSQLLVALEL 837 (932)
Q Consensus 818 ~ad~vl~~~~~~~i~~~i~~ 837 (932)
.||++..+++-++|.++++.
T Consensus 240 ~A~~vt~~n~~~Gv~~~l~~ 259 (264)
T COG0561 240 LADYVTTSNDEDGVAEALEK 259 (264)
T ss_pred hCCcccCCccchHHHHHHHH
Confidence 99999899999999999874
No 45
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.12 E-value=6.1e-10 Score=110.81 Aligned_cols=106 Identities=19% Similarity=0.185 Sum_probs=87.5
Q ss_pred HHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecccChhhHHHHHHHHhh----CCCEEEEEcCCcccHHHHHhC
Q 002354 727 VVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQN----DENVVAMVGDGINDAAALASS 802 (932)
Q Consensus 727 ~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~----~g~~v~~vGDg~ND~~al~~A 802 (932)
+|++|+++|+++.++|+++...+..+.+++|+. .++... ..|.+.++.+.+ ....++|+||+.||.+|++.|
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~--~~~~~~--~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~a 111 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGIT--HLYQGQ--SNKLIAFSDILEKLALAPENVAYIGDDLIDWPVMEKV 111 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCC--EEEecc--cchHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHC
Confidence 899999999999999999999999999999997 455443 345555555533 346799999999999999999
Q ss_pred CeeEEecCchHHHHhhcCEEEeCCChhH-HHHHHH
Q 002354 803 HIGVAMGGGVGAASEVASVVLMGNRLSQ-LLVALE 836 (932)
Q Consensus 803 ~vgIa~~~~~~~a~~~ad~vl~~~~~~~-i~~~i~ 836 (932)
+++++|.++.+..+..+|+++.++.-++ +.++++
T Consensus 112 g~~~~v~~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 146 (154)
T TIGR01670 112 GLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCE 146 (154)
T ss_pred CCeEecCCcCHHHHHhCCEEecCCCCCcHHHHHHH
Confidence 9999999999999999999998765444 555544
No 46
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.11 E-value=3.8e-10 Score=125.16 Aligned_cols=115 Identities=21% Similarity=0.289 Sum_probs=100.2
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecc-----------------cChhhHHHHHHHHhh
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSG-----------------VKPNEKKRFINELQN 781 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~-----------------~~p~~K~~~v~~l~~ 781 (932)
++.|++.+.++.|++.|+++.++||.....+..+.+++|++ .++++ +..+.|.+.++.+.+
T Consensus 181 ~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld--~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~ 258 (322)
T PRK11133 181 PLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLD--AAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQ 258 (322)
T ss_pred CCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCC--eEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHH
Confidence 57999999999999999999999999988899999999996 33321 234678888888765
Q ss_pred C----CCEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhhcCEEEeCCChhHHHHHHH
Q 002354 782 D----ENVVAMVGDGINDAAALASSHIGVAMGGGVGAASEVASVVLMGNRLSQLLVALE 836 (932)
Q Consensus 782 ~----g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl~~~~~~~i~~~i~ 836 (932)
+ .+.+++||||.||.+|++.|++|||| ++.+.+++.||+++..++++++..++-
T Consensus 259 ~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~-nAkp~Vk~~Ad~~i~~~~l~~~l~~~~ 316 (322)
T PRK11133 259 EYEIPLAQTVAIGDGANDLPMIKAAGLGIAY-HAKPKVNEQAQVTIRHADLMGVLCILS 316 (322)
T ss_pred HcCCChhhEEEEECCHHHHHHHHHCCCeEEe-CCCHHHHhhCCEEecCcCHHHHHHHhc
Confidence 3 36799999999999999999999999 899999999999999999999988754
No 47
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.08 E-value=5.6e-10 Score=116.04 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=99.9
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceec--------c-------cChhhHHHHHHHHhhCC
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLS--------G-------VKPNEKKRFINELQNDE 783 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~--------~-------~~p~~K~~~v~~l~~~g 783 (932)
++.|++.+.|+.|++.| +++++||.....+..+++++|++ .+++ + ..++.|...++.+++.+
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~--~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~~ 144 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFP--TLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLY 144 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCc--hhhceeeEEecCCeeECeeecCcchHHHHHHHHHhhC
Confidence 57999999999999975 99999999999999999999997 3443 1 34678999999998888
Q ss_pred CEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhhcCEEEeCCChhHHHHHHHHH
Q 002354 784 NVVAMVGDGINDAAALASSHIGVAMGGGVGAASEVASVVLMGNRLSQLLVALELS 838 (932)
Q Consensus 784 ~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl~~~~~~~i~~~i~~g 838 (932)
..+.|+|||.||.+|++.||++|++. +.+..++.||-.-.-.+.+.+..++.++
T Consensus 145 ~~~v~vGDs~nDl~ml~~Ag~~ia~~-ak~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
T TIGR02137 145 YRVIAAGDSYNDTTMLSEAHAGILFH-APENVIREFPQFPAVHTYEDLKREFLKA 198 (203)
T ss_pred CCEEEEeCCHHHHHHHHhCCCCEEec-CCHHHHHhCCCCCcccCHHHHHHHHHHH
Confidence 88999999999999999999999996 5567777777666667888888888876
No 48
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.05 E-value=8.1e-10 Score=116.99 Aligned_cols=130 Identities=22% Similarity=0.265 Sum_probs=99.2
Q ss_pred EEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCc---------------------
Q 002354 704 VGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDK--------------------- 762 (932)
Q Consensus 704 va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~--------------------- 762 (932)
+..|++++- =...+.+.+.++|++|++.|++++++||++...+..+.+++|++...
T Consensus 3 ~DlDGTLl~---~~~~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~~~~~~~~~~~ 79 (225)
T TIGR01482 3 SDIDGTLTD---PNRAINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTPDPVIAENGGEISYNEGMDDIFLAY 79 (225)
T ss_pred EeccCccCC---CCcccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCeEEEecCcEEEeCCCCceEEecc
Confidence 445677663 12358899999999999999999999999999999999999963210
Q ss_pred ----------------------------------------------------e-------ecccCh--hhHHHHHHHHhh
Q 002354 763 ----------------------------------------------------V-------LSGVKP--NEKKRFINELQN 781 (932)
Q Consensus 763 ----------------------------------------------------v-------~~~~~p--~~K~~~v~~l~~ 781 (932)
+ +..+.| -.|..-++.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~ 159 (225)
T TIGR01482 80 LEEEWFLDIVIAKTFPFSRLKVQYPRRASLVKMRYGIDVDTVREIIKELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKE 159 (225)
T ss_pred cCHHHHHHHHHhcccchhhhccccccccceEEEeecCCHHHHHHHHHhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHH
Confidence 0 000111 134444444433
Q ss_pred C----CCEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhhcCEEEeCCChhH----HHHHHH
Q 002354 782 D----ENVVAMVGDGINDAAALASSHIGVAMGGGVGAASEVASVVLMGNRLSQ----LLVALE 836 (932)
Q Consensus 782 ~----g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl~~~~~~~----i~~~i~ 836 (932)
+ ...++++||+.||.+|++.|++|+||+|+.+.+|+.||+|+.+++-++ |.++++
T Consensus 160 ~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na~~~~k~~A~~vt~~~~~~G~~~~v~~~l~ 222 (225)
T TIGR01482 160 KLGIKPGETLVCGDSENDIDLFEVPGFGVAVANAQPELKEWADYVTESPYGEGGAEAIGEILQ 222 (225)
T ss_pred HhCCCHHHEEEECCCHhhHHHHHhcCceEEcCChhHHHHHhcCeecCCCCCCcHHHHHHHHHH
Confidence 2 246999999999999999999999999999999999999999888888 666654
No 49
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.04 E-value=2e-09 Score=117.53 Aligned_cols=134 Identities=17% Similarity=0.266 Sum_probs=101.9
Q ss_pred eEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC------------------
Q 002354 700 SLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD------------------ 761 (932)
Q Consensus 700 ~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~------------------ 761 (932)
..+++..||+++. =..++.+.++++|++|+++|++++++||++...+..+.++++++..
T Consensus 4 kli~~DlDGTLl~---~~~~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~d~~~~~~l 80 (272)
T PRK10530 4 RVIALDLDGTLLT---PKKTILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDYQAKKVL 80 (272)
T ss_pred cEEEEeCCCceEC---CCCccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCCCEEEcCCcEEEecCCCEEE
Confidence 4677788999873 2335899999999999999999999999999999999999997421
Q ss_pred ------------------------------ceecccC-------------------------------------------
Q 002354 762 ------------------------------KVLSGVK------------------------------------------- 768 (932)
Q Consensus 762 ------------------------------~v~~~~~------------------------------------------- 768 (932)
.++..-.
T Consensus 81 ~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (272)
T PRK10530 81 EADPLPVQQALQVIEMLDEHQIHGLMYVDDAMLYEHPTGHVIRTLNWAQTLPPEQRPTFTQVDSLAQAARQVNAIWKFAL 160 (272)
T ss_pred EecCCCHHHHHHHHHHHHhCCcEEEEEcCCceEecCchHHHHHHhhhhhccchhcccceEEcccHHHHHhhcCCcEEEEE
Confidence 0000000
Q ss_pred --h-hhH-HHHHHHHhhC---------------------------------C---CEEEEEcCCcccHHHHHhCCeeEEe
Q 002354 769 --P-NEK-KRFINELQND---------------------------------E---NVVAMVGDGINDAAALASSHIGVAM 808 (932)
Q Consensus 769 --p-~~K-~~~v~~l~~~---------------------------------g---~~v~~vGDg~ND~~al~~A~vgIa~ 808 (932)
+ .+| .++.+.+.+. | ..+++|||+.||.+|++.|++|++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~~gi~~~e~i~~GD~~NDi~m~~~ag~~vam 240 (272)
T PRK10530 161 THEDLPQLQHFAKHVEHELGLECEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMKNVVAFGDNFNDISMLEAAGLGVAM 240 (272)
T ss_pred ecCCHHHHHHHHHHHhhhcCceEEEecCceEEEecCCCChHHHHHHHHHHcCCCHHHeEEeCCChhhHHHHHhcCceEEe
Confidence 0 000 0111111110 1 3488999999999999999999999
Q ss_pred cCchHHHHhhcCEEEeCCChhHHHHHHH
Q 002354 809 GGGVGAASEVASVVLMGNRLSQLLVALE 836 (932)
Q Consensus 809 ~~~~~~a~~~ad~vl~~~~~~~i~~~i~ 836 (932)
|++.+..++.||+|+.+++-++|.++++
T Consensus 241 gna~~~lk~~Ad~v~~~n~~dGv~~~l~ 268 (272)
T PRK10530 241 GNADDAVKARADLVIGDNTTPSIAEFIY 268 (272)
T ss_pred cCchHHHHHhCCEEEecCCCCcHHHHHH
Confidence 9999999999999999999999999886
No 50
>PLN02887 hydrolase family protein
Probab=99.02 E-value=1.3e-09 Score=128.99 Aligned_cols=136 Identities=19% Similarity=0.298 Sum_probs=103.6
Q ss_pred CCeEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--------------C--
Q 002354 698 NQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--------------D-- 761 (932)
Q Consensus 698 g~~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--------------~-- 761 (932)
....+++..||+++. -..++.+.+.++|++|+++|++++++||++...+..+.+++++.. +
T Consensus 307 ~iKLIa~DLDGTLLn---~d~~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~~~~~~I~~~~p~I~~NGA 383 (580)
T PLN02887 307 KFSYIFCDMDGTLLN---SKSQISETNAKALKEALSRGVKVVIATGKARPAVIDILKMVDLAGKDGIISESSPGVFLQGL 383 (580)
T ss_pred CccEEEEeCCCCCCC---CCCccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcccccceEeecccEEeecCe
Confidence 456788888999884 234699999999999999999999999999999999999887520 0
Q ss_pred ----------------------------------------ceecc-c---------------------------------
Q 002354 762 ----------------------------------------KVLSG-V--------------------------------- 767 (932)
Q Consensus 762 ----------------------------------------~v~~~-~--------------------------------- 767 (932)
.+|.. -
T Consensus 384 ~I~d~~g~~I~~~~L~~e~v~eIi~~~~~~~i~~~~~~~d~~y~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~i~K 463 (580)
T PLN02887 384 LVYGRQGREIYRSNLDQEVCREACLYSLEHKIPLIAFSQDRCLTLFDHPLVDSLHTIYHEPKAEIMSSVDQLLAAADIQK 463 (580)
T ss_pred EEEECCCcEEEEEeCCHHHHHHHHHHHHHcCCeEEEEECCeEEEecCchHHHHHHHhhccccccccCCHHHhhcccCeeE
Confidence 01100 0
Q ss_pred -----ChhhH-HHHHHHHhhC--------------------------------------CCEEEEEcCCcccHHHHHhCC
Q 002354 768 -----KPNEK-KRFINELQND--------------------------------------ENVVAMVGDGINDAAALASSH 803 (932)
Q Consensus 768 -----~p~~K-~~~v~~l~~~--------------------------------------g~~v~~vGDg~ND~~al~~A~ 803 (932)
.+++. ..+.+.+++. ...|+++||+.||.+||+.|+
T Consensus 464 i~~~~~~e~~~~~l~~~l~~~~~~~~~v~~S~~~~lEI~p~gvSKG~ALk~L~e~lGI~~eeviAFGDs~NDIeMLe~AG 543 (580)
T PLN02887 464 VIFLDTAEGVSSVLRPYWSEATGDRANVVQAQPDMLEIVPPGTSKGNGVKMLLNHLGVSPDEIMAIGDGENDIEMLQLAS 543 (580)
T ss_pred EEEEcChHHHHHHHHHHHHHHhcCcEEEEEecCcEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEecchhhHHHHHHCC
Confidence 00000 0111111110 125899999999999999999
Q ss_pred eeEEecCchHHHHhhcCEEEeCCChhHHHHHHH
Q 002354 804 IGVAMGGGVGAASEVASVVLMGNRLSQLLVALE 836 (932)
Q Consensus 804 vgIa~~~~~~~a~~~ad~vl~~~~~~~i~~~i~ 836 (932)
.||||+||.+.+|+.||+|+.+|+-++|.++|+
T Consensus 544 ~gVAMgNA~eeVK~~Ad~VT~sNdEDGVA~aLe 576 (580)
T PLN02887 544 LGVALSNGAEKTKAVADVIGVSNDEDGVADAIY 576 (580)
T ss_pred CEEEeCCCCHHHHHhCCEEeCCCCcCHHHHHHH
Confidence 999999999999999999999999999999886
No 51
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=98.99 E-value=2e-09 Score=108.16 Aligned_cols=109 Identities=22% Similarity=0.265 Sum_probs=87.8
Q ss_pred HHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecccCh--hhHHHHHHHHhhCCCEEEEEcCCcccHHHHHhCC
Q 002354 726 HVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGVKP--NEKKRFINELQNDENVVAMVGDGINDAAALASSH 803 (932)
Q Consensus 726 ~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~~~p--~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~ 803 (932)
..|+.|++.|+++.++|+.+...+..+.+.+|+. .+|....| +....+++.+.-....++||||+.||.+|++.|+
T Consensus 41 ~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~--~~f~~~kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag 118 (169)
T TIGR02726 41 MGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIK--RFHEGIKKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVG 118 (169)
T ss_pred HHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCc--EEEecCCCCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCC
Confidence 5789999999999999999999999999999997 56555533 3334444444434467999999999999999999
Q ss_pred eeEEecCchHHHHhhcCEEEeCCChhHH-HHHHH
Q 002354 804 IGVAMGGGVGAASEVASVVLMGNRLSQL-LVALE 836 (932)
Q Consensus 804 vgIa~~~~~~~a~~~ad~vl~~~~~~~i-~~~i~ 836 (932)
+++||+++.+.+++.|++|+..++-+++ .++++
T Consensus 119 ~~~am~nA~~~lk~~A~~I~~~~~~~g~v~e~~e 152 (169)
T TIGR02726 119 LAVAVGDAVADVKEAAAYVTTARGGHGAVREVAE 152 (169)
T ss_pred CeEECcCchHHHHHhCCEEcCCCCCCCHHHHHHH
Confidence 9999999999999999999876555443 44433
No 52
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.99 E-value=2e-09 Score=115.11 Aligned_cols=129 Identities=22% Similarity=0.294 Sum_probs=100.3
Q ss_pred EEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC----------------------
Q 002354 704 VGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD---------------------- 761 (932)
Q Consensus 704 va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~---------------------- 761 (932)
+..||+++- =...+.+.+.++|++|+++|+++++.||++...+..+.++++++..
T Consensus 3 ~DlDGTLl~---~~~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~~~~I~~nGa~i~~~~~~~l~~~~i 79 (254)
T PF08282_consen 3 SDLDGTLLN---SDGKISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGIDDYFICSNGALIDDPKGKILYEKPI 79 (254)
T ss_dssp EECCTTTCS---TTSSSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHCSEEEEGGGTEEEETTTEEEEEESB
T ss_pred EEECCceec---CCCeeCHHHHHHHHhhcccceEEEEEccCcccccccccccccchhhhcccccceeeecccccchhhhe
Confidence 344555532 3456889999999999999999999999999999999999997420
Q ss_pred ---------------------------------------------------------------ceec-------------
Q 002354 762 ---------------------------------------------------------------KVLS------------- 765 (932)
Q Consensus 762 ---------------------------------------------------------------~v~~------------- 765 (932)
.+..
T Consensus 80 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ki~~~~~~~~~~~l~~~ 159 (254)
T PF08282_consen 80 DSDDVKKILKYLKEHNISFFFYTDDDIYIYENKDEEELFFEHKFFNFKESIVSEDDLEDEEIFKILFFPDPEDLEQLREE 159 (254)
T ss_dssp -HHHHHHHHHHHHHTTCEEEEEESSEEEESSTTCHHHHHHHHHHTSCEEEESHHHHHHCSSESEEEEESCHHHHHHHHHH
T ss_pred eccchhheeehhhhcccccccccceeeecccccccchhhhhhcccccccccccccccccccceeeeccccchhhhhhhhh
Confidence 0000
Q ss_pred -------------------ccCh--hhHHHHHHHHhh----CCCEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhhcC
Q 002354 766 -------------------GVKP--NEKKRFINELQN----DENVVAMVGDGINDAAALASSHIGVAMGGGVGAASEVAS 820 (932)
Q Consensus 766 -------------------~~~p--~~K~~~v~~l~~----~g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad 820 (932)
.++| -.|..-++.+.+ ..+.++++||+.||.+||+.++.|+||+++++..++.||
T Consensus 160 l~~~~~~~~~~~~~~~~~lei~~~~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~na~~~~k~~a~ 239 (254)
T PF08282_consen 160 LKKKFPNLIDVVRSSPYFLEITPKGVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMGNATPELKKAAD 239 (254)
T ss_dssp HHHHHTTTEEEEEEETTEEEEEETTSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSS
T ss_pred hccccCcceeEEEecccceEEeeCCCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEEcCCCHHHHHhCC
Confidence 1122 345555555543 235799999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHH
Q 002354 821 VVLMGNRLSQLLVAL 835 (932)
Q Consensus 821 ~vl~~~~~~~i~~~i 835 (932)
+++..++-++|.++|
T Consensus 240 ~i~~~~~~~gv~~~i 254 (254)
T PF08282_consen 240 YITPSNNDDGVAKAI 254 (254)
T ss_dssp EEESSGTCTHHHHHH
T ss_pred EEecCCCCChHHHhC
Confidence 999987779998875
No 53
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.87 E-value=7.6e-09 Score=111.99 Aligned_cols=131 Identities=22% Similarity=0.375 Sum_probs=98.2
Q ss_pred EEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC--------------------
Q 002354 702 VYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD-------------------- 761 (932)
Q Consensus 702 ~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~-------------------- 761 (932)
+++..||+++-- ..++.+++.++|++|+++|++++++||++...+..+.+++|++..
T Consensus 2 i~~DlDGTLl~~---~~~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~~~I~~NGa~i~~~~~~~i~~~ 78 (256)
T TIGR00099 2 IFIDLDGTLLND---DHTISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLDTPFITANGAAVIDDQGEILYKK 78 (256)
T ss_pred EEEeCCCCCCCC---CCccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCCCCEEEcCCcEEECCCCCEEeec
Confidence 455667887741 346889999999999999999999999999999999999997410
Q ss_pred ---------------------------ceecc--------------------------------------cChhhHHHHH
Q 002354 762 ---------------------------KVLSG--------------------------------------VKPNEKKRFI 776 (932)
Q Consensus 762 ---------------------------~v~~~--------------------------------------~~p~~K~~~v 776 (932)
.++.. ..+++..++.
T Consensus 79 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (256)
T TIGR00099 79 PLDLDLVEEILNFLKKHGLDVILYGDDSIYASKNDPEYFTIFKKFLGEPKLEVVDIQYLPDDILKILLLFLDPEDLDLLI 158 (256)
T ss_pred CCCHHHHHHHHHHHHHcCcEEEEEeCCeEEecCCCcchhHHHHHhccCCcceeccchhhhcccceEEEEECCHHHHHHHH
Confidence 00000 0011111222
Q ss_pred HHHhh-----------------------------------C----CCEEEEEcCCcccHHHHHhCCeeEEecCchHHHHh
Q 002354 777 NELQN-----------------------------------D----ENVVAMVGDGINDAAALASSHIGVAMGGGVGAASE 817 (932)
Q Consensus 777 ~~l~~-----------------------------------~----g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~ 817 (932)
+.+++ . ...++++||+.||.+|++.|++++||+++.+.+++
T Consensus 159 ~~~~~~~~~~~~~~~~s~~~~leI~~~~~~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~~na~~~~k~ 238 (256)
T TIGR00099 159 EALNKLELEENVSVVSSGPYSIEITAKGVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMGNADEELKA 238 (256)
T ss_pred HHhhhhhhcCCEEEEEecCceEEecCCCCChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEecCchHHHHH
Confidence 22221 0 13488999999999999999999999999999999
Q ss_pred hcCEEEeCCChhHHHHHH
Q 002354 818 VASVVLMGNRLSQLLVAL 835 (932)
Q Consensus 818 ~ad~vl~~~~~~~i~~~i 835 (932)
.||+++.+++-++|.++|
T Consensus 239 ~a~~~~~~n~~dGV~~~l 256 (256)
T TIGR00099 239 LADYVTDSNNEDGVALAL 256 (256)
T ss_pred hCCEEecCCCCcchhhhC
Confidence 999999999999987753
No 54
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.86 E-value=1.8e-08 Score=103.22 Aligned_cols=127 Identities=21% Similarity=0.256 Sum_probs=97.8
Q ss_pred CCCeEEEEEECCEEEEE-EEe---cccccHHHH---HHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecccCh
Q 002354 697 MNQSLVYVGVDNMLAGL-IYV---EDRIRDDAA---HVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGVKP 769 (932)
Q Consensus 697 ~g~~~~~va~~~~~lG~-i~l---~D~lr~~~~---~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~~~p 769 (932)
.+.+.+.+..|++++.- +.+ ..++++... .+|+.|+++|+++.++||++...+..+++++|+. .+|...
T Consensus 19 ~~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~--~~f~g~-- 94 (183)
T PRK09484 19 ENIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDGYGIRCLLTSGIEVAIITGRKSKLVEDRMTTLGIT--HLYQGQ-- 94 (183)
T ss_pred hCceEEEEcCCeeeecCEEEEcCCCCEEEEEeccchHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCc--eeecCC--
Confidence 35778888888887731 111 112233333 6899999999999999999999999999999997 566543
Q ss_pred hhHHHHHHHHhh-C---CCEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhhcCEEEeCCC
Q 002354 770 NEKKRFINELQN-D---ENVVAMVGDGINDAAALASSHIGVAMGGGVGAASEVASVVLMGNR 827 (932)
Q Consensus 770 ~~K~~~v~~l~~-~---g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl~~~~ 827 (932)
++|...++.+.+ . ...++||||+.||.+|++.|+++++++++.+..+..||+++..+.
T Consensus 95 ~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~~v~~~~~~~~~~a~~v~~~~~ 156 (183)
T PRK09484 95 SNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSVAVADAHPLLLPRADYVTRIAG 156 (183)
T ss_pred CcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeEecCChhHHHHHhCCEEecCCC
Confidence 456666555433 2 357999999999999999999999999888999999999997543
No 55
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.83 E-value=1.3e-08 Score=107.44 Aligned_cols=113 Identities=23% Similarity=0.348 Sum_probs=93.9
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecc-----------------cChhhHHHHHHHHhh
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSG-----------------VKPNEKKRFINELQN 781 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~-----------------~~p~~K~~~v~~l~~ 781 (932)
+++|++.+.++.|++.|++++++|+.....+..+.+.+|++ .+++. ..+..|.++++.+.+
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 162 (219)
T TIGR00338 85 PLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLD--AAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLR 162 (219)
T ss_pred CcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC--ceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHH
Confidence 57999999999999999999999999999999999999997 34431 122347777776544
Q ss_pred CC----CEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhhcCEEEeCCChhHHHHH
Q 002354 782 DE----NVVAMVGDGINDAAALASSHIGVAMGGGVGAASEVASVVLMGNRLSQLLVA 834 (932)
Q Consensus 782 ~g----~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl~~~~~~~i~~~ 834 (932)
+. ..++||||+.||.+|++.|+++++++ +.+..++.||+++.++++..+..+
T Consensus 163 ~~~~~~~~~i~iGDs~~Di~aa~~ag~~i~~~-~~~~~~~~a~~~i~~~~~~~~~~~ 218 (219)
T TIGR00338 163 KEGISPENTVAVGDGANDLSMIKAAGLGIAFN-AKPKLQQKADICINKKDLTDILPL 218 (219)
T ss_pred HcCCCHHHEEEEECCHHHHHHHHhCCCeEEeC-CCHHHHHhchhccCCCCHHHHHhh
Confidence 32 46999999999999999999999995 568888999999999998877654
No 56
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.80 E-value=1.6e-08 Score=105.78 Aligned_cols=106 Identities=23% Similarity=0.255 Sum_probs=85.5
Q ss_pred ccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC--------------ceecc-cChhhHHHHHHHHhh-
Q 002354 718 DRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD--------------KVLSG-VKPNEKKRFINELQN- 781 (932)
Q Consensus 718 D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~--------------~v~~~-~~p~~K~~~v~~l~~- 781 (932)
.+++|++.+.++.++++|.+++++||-...-+..+|+++|++.. .+... +..+.|...++.+.+
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~ 155 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAE 155 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999631 11111 345789888876655
Q ss_pred CCC---EEEEEcCCcccHHHHHhCCeeEEecCchHHHHhhcCEEEe
Q 002354 782 DEN---VVAMVGDGINDAAALASSHIGVAMGGGVGAASEVASVVLM 824 (932)
Q Consensus 782 ~g~---~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl~ 824 (932)
.|. .+.++|||.||.|||+.|+.+|++. ..+..+..|+....
T Consensus 156 ~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n-~~~~l~~~a~~~~~ 200 (212)
T COG0560 156 LGIPLEETVAYGDSANDLPMLEAAGLPIAVN-PKPKLRALADVRIW 200 (212)
T ss_pred cCCCHHHeEEEcCchhhHHHHHhCCCCeEeC-cCHHHHHHHHHhcC
Confidence 344 5999999999999999999999996 33445666665554
No 57
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=98.75 E-value=2e-08 Score=96.01 Aligned_cols=115 Identities=21% Similarity=0.267 Sum_probs=94.4
Q ss_pred HHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecccChhhHHHHHHHHhhC----CCEEEEEcCCcccHHHHHh
Q 002354 726 HVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQND----ENVVAMVGDGINDAAALAS 801 (932)
Q Consensus 726 ~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~----g~~v~~vGDg~ND~~al~~ 801 (932)
..|+.|.+.|+++.++||++...++.-|+++||+ .+|-.. ++|....+.|.++ .+.|+++||..||.|+|+.
T Consensus 42 ~Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~--~~~qG~--~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dlpvm~~ 117 (170)
T COG1778 42 HGIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIK--HLYQGI--SDKLAAFEELLKKLNLDPEEVAYVGDDLVDLPVMEK 117 (170)
T ss_pred HHHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCc--eeeech--HhHHHHHHHHHHHhCCCHHHhhhhcCccccHHHHHH
Confidence 4688999999999999999999999999999997 677544 5788777777553 4579999999999999999
Q ss_pred CCeeEEecCchHHHHhhcCEEEeCCC----hhHHHHHHHHHHHHHHH
Q 002354 802 SHIGVAMGGGVGAASEVASVVLMGNR----LSQLLVALELSRLTMKT 844 (932)
Q Consensus 802 A~vgIa~~~~~~~a~~~ad~vl~~~~----~~~i~~~i~~gR~~~~~ 844 (932)
.++++|+.++.+..++.||+|+..+. ...+.++|-.++..+..
T Consensus 118 vGls~a~~dAh~~v~~~a~~Vt~~~GG~GAvREv~dlil~aq~~~d~ 164 (170)
T COG1778 118 VGLSVAVADAHPLLKQRADYVTSKKGGEGAVREVCDLILQAQGKLDE 164 (170)
T ss_pred cCCcccccccCHHHHHhhHhhhhccCcchHHHHHHHHHHHccCcHHH
Confidence 99999999999999999999998653 33444555555554433
No 58
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.73 E-value=7.9e-08 Score=104.99 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=51.5
Q ss_pred CCCeEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 002354 697 MNQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIP 759 (932)
Q Consensus 697 ~g~~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~ 759 (932)
+....++...||+++- =...+.+.++++|++|+++|++++++||++...+..+.+++|++
T Consensus 5 ~~~~lI~~DlDGTLL~---~~~~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 5 QDPLLIFTDLDGTLLD---SHTYDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred CCCeEEEEeCccCCcC---CCCcCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 3567788888999874 13346788999999999999999999999999999999999984
No 59
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.70 E-value=1.7e-08 Score=99.35 Aligned_cols=91 Identities=27% Similarity=0.476 Sum_probs=80.0
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceeccc-------------------ChhhHHHHHHHH
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGV-------------------KPNEKKRFINEL 779 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~~-------------------~p~~K~~~v~~l 779 (932)
++.|+++|.+..||++|.+++++||.-..-+..+|.++||+..++||+. .-..|.++++.+
T Consensus 88 ~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~l 167 (227)
T KOG1615|consen 88 TLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIALL 167 (227)
T ss_pred ccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHHHH
Confidence 5689999999999999999999999999999999999999976677652 235699999999
Q ss_pred hhC--CCEEEEEcCCcccHHHHHhCCeeEEec
Q 002354 780 QND--ENVVAMVGDGINDAAALASSHIGVAMG 809 (932)
Q Consensus 780 ~~~--g~~v~~vGDg~ND~~al~~A~vgIa~~ 809 (932)
++. -..++|||||.||.+|+..||.=|+.+
T Consensus 168 rk~~~~~~~~mvGDGatDlea~~pa~afi~~~ 199 (227)
T KOG1615|consen 168 RKNYNYKTIVMVGDGATDLEAMPPADAFIGFG 199 (227)
T ss_pred HhCCChheeEEecCCccccccCCchhhhhccC
Confidence 883 347999999999999999988888876
No 60
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.67 E-value=1.4e-07 Score=103.24 Aligned_cols=135 Identities=18% Similarity=0.236 Sum_probs=100.4
Q ss_pred CeEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC-------ceec------
Q 002354 699 QSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD-------KVLS------ 765 (932)
Q Consensus 699 ~~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~-------~v~~------ 765 (932)
..++++..||+++.- .+.+.++++++|++|+++|++++++||++...+..+.+++|++.. .++.
T Consensus 4 ~kli~~DlDGTLl~~---~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~~~~i~~nGa~i~~~~~~~~ 80 (273)
T PRK00192 4 KLLVFTDLDGTLLDH---HTYSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLEDPFIVENGAAIYIPKNYFP 80 (273)
T ss_pred ceEEEEcCcccCcCC---CCcCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCEEEEcCcEEEecccccc
Confidence 356777889988842 346788899999999999999999999999999999999997421 1110
Q ss_pred ----------------c-c----------------------------------------------------------Chh
Q 002354 766 ----------------G-V----------------------------------------------------------KPN 770 (932)
Q Consensus 766 ----------------~-~----------------------------------------------------------~p~ 770 (932)
. + +++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (273)
T PRK00192 81 FQPDGERLKGDYWVIELGPPYEELREILDEISDELGYPLKGFGDLSAEEVAELTGLSGESARLAKDREFSEPFLWNGSEA 160 (273)
T ss_pred cCCccccccCCceEEEcCCCHHHHHHHHHHHHHHhCCCeeehhhCCHHHHHHHhCcCHHHHHHHHhcccCCceeecCchH
Confidence 0 0 000
Q ss_pred -----------------------------hHHHHHHHHhh----CC-CEEEEEcCCcccHHHHHhCCeeEEecCchHHHH
Q 002354 771 -----------------------------EKKRFINELQN----DE-NVVAMVGDGINDAAALASSHIGVAMGGGVGAAS 816 (932)
Q Consensus 771 -----------------------------~K~~~v~~l~~----~g-~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~ 816 (932)
.|..-++.+.+ .. ..|+++||+.||.+|++.|++|++|+||.+.+|
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~ei~~~~~Kg~al~~l~~~~~i~~~~~v~~~GDs~NDi~m~~~ag~~vam~NA~~~~k 240 (273)
T PRK00192 161 AKERFEEALKRLGLKVTRGGRFLHLLGGGDKGKAVRWLKELYRRQDGVETIALGDSPNDLPMLEAADIAVVVPGPDGPNP 240 (273)
T ss_pred HHHHHHHHHHHcCCEEEECCeEEEEeCCCCHHHHHHHHHHHHhccCCceEEEEcCChhhHHHHHhCCeeEEeCCCCCCCc
Confidence 01111111111 23 789999999999999999999999999999999
Q ss_pred ----hhc-CEEE--eCCChhHHHHHHH
Q 002354 817 ----EVA-SVVL--MGNRLSQLLVALE 836 (932)
Q Consensus 817 ----~~a-d~vl--~~~~~~~i~~~i~ 836 (932)
..| +.+. ..++-+++.++++
T Consensus 241 ~~~~~~a~~~v~~~~~~~~~Gv~~~l~ 267 (273)
T PRK00192 241 PLLPGIADGEFILASAPGPEGWAEAIN 267 (273)
T ss_pred ccCccccCCceEEecCCCcHHHHHHHH
Confidence 666 6777 5677889988876
No 61
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=98.58 E-value=3.2e-07 Score=95.71 Aligned_cols=114 Identities=19% Similarity=0.254 Sum_probs=90.3
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceec-------------c--cChhhHHHHHHHHhhCC
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLS-------------G--VKPNEKKRFINELQNDE 783 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~-------------~--~~p~~K~~~v~~l~~~g 783 (932)
++.|++.+.++.|+++ +++.++|+.....+..+.+++|++. +++ . ..|+.|...++.++..+
T Consensus 68 ~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~--~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~ 144 (205)
T PRK13582 68 DPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPT--LFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLG 144 (205)
T ss_pred CCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCch--hhcceEEECCCCeEECccccccchHHHHHHHHHHhC
Confidence 3579999999999999 9999999999999999999999862 221 1 24678889999998888
Q ss_pred CEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhhcCEEEeCCChhHHHHHHH
Q 002354 784 NVVAMVGDGINDAAALASSHIGVAMGGGVGAASEVASVVLMGNRLSQLLVALE 836 (932)
Q Consensus 784 ~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl~~~~~~~i~~~i~ 836 (932)
..++||||+.||.+|.+.|++|+..+...+.....++..+ -+++..+.+.++
T Consensus 145 ~~~v~iGDs~~D~~~~~aa~~~v~~~~~~~~~~~~~~~~~-~~~~~el~~~l~ 196 (205)
T PRK13582 145 YRVIAAGDSYNDTTMLGEADAGILFRPPANVIAEFPQFPA-VHTYDELLAAID 196 (205)
T ss_pred CeEEEEeCCHHHHHHHHhCCCCEEECCCHHHHHhCCcccc-cCCHHHHHHHHH
Confidence 9999999999999999999999998765444444556522 246666665544
No 62
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.57 E-value=3.8e-07 Score=98.71 Aligned_cols=53 Identities=21% Similarity=0.103 Sum_probs=47.0
Q ss_pred CEEEEEcCCcccHHHHHhCCeeEEecCch---HHHHhh--c-CEEEeCCChhHHHHHHH
Q 002354 784 NVVAMVGDGINDAAALASSHIGVAMGGGV---GAASEV--A-SVVLMGNRLSQLLVALE 836 (932)
Q Consensus 784 ~~v~~vGDg~ND~~al~~A~vgIa~~~~~---~~a~~~--a-d~vl~~~~~~~i~~~i~ 836 (932)
..++++||+.||.+||+.|+.||||+|+. +..|+. | ++|+.+++-++|.++++
T Consensus 195 ~~~~a~GD~~ND~~Ml~~ag~~vam~Na~~~~~~lk~~~~a~~~vt~~~~~dGva~~l~ 253 (256)
T TIGR01486 195 IKVVGLGDSPNDLPLLEVVDLAVVVPGPNGPNVSLKPGDPGSFLLTPAPGPEGWREALE 253 (256)
T ss_pred ceEEEEcCCHhhHHHHHHCCEEEEeCCCCCCccccCccCCCcEEEcCCCCcHHHHHHHH
Confidence 35999999999999999999999999997 478886 4 58888999999999886
No 63
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=98.55 E-value=3.4e-07 Score=97.82 Aligned_cols=131 Identities=18% Similarity=0.231 Sum_probs=94.7
Q ss_pred EEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC--------------------
Q 002354 702 VYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD-------------------- 761 (932)
Q Consensus 702 ~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~-------------------- 761 (932)
++...|++++. .|+--++..++++ ++++|++++++||++...+..+.+++++...
T Consensus 2 i~~DlDgTLl~----~~~~~~~~~~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~~~~~~I~~nGa~i~~~~~~~~~ 76 (236)
T TIGR02471 2 IITDLDNTLLG----DDEGLASFVELLR-GSGDAVGFGIATGRSVESAKSRYAKLNLPSPDVLIARVGTEIYYGPELQPD 76 (236)
T ss_pred eEEeccccccC----CHHHHHHHHHHHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCCCCCEEEECCCceEEeCCCCCCC
Confidence 34456777775 4444444456666 6999999999999999999999999987310
Q ss_pred -------------------------------------ceecccChh----------------------------------
Q 002354 762 -------------------------------------KVLSGVKPN---------------------------------- 770 (932)
Q Consensus 762 -------------------------------------~v~~~~~p~---------------------------------- 770 (932)
.+..+..|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ei~~~ 156 (236)
T TIGR02471 77 RFWQKHIDHDWRRQAVVEALADIPGLTLQDDQEQGPFKISYLLDPEGEPILPQIRQRLRQQSQAAKVILSCGWFLDVLPL 156 (236)
T ss_pred hhHHHHHhcCCCHHHHHHHHhcCCCcEeCChhcCCCeeEEEEECcccchHHHHHHHHHHhccCCEEEEEECCceEEEeeC
Confidence 000111121
Q ss_pred --hHHHHHHHHhhC-C---CEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhhcC----EEEeCCChhHHHHHHHH
Q 002354 771 --EKKRFINELQND-E---NVVAMVGDGINDAAALASSHIGVAMGGGVGAASEVAS----VVLMGNRLSQLLVALEL 837 (932)
Q Consensus 771 --~K~~~v~~l~~~-g---~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad----~vl~~~~~~~i~~~i~~ 837 (932)
.|...++.+.++ | ..++++||+.||.+||+.++.||+|+|+.+.+++.|| +|...++-.++.++|+.
T Consensus 157 ~~~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~iav~na~~~~k~~a~~~~~~v~~~~~~~Gv~~~i~~ 233 (236)
T TIGR02471 157 RASKGLALRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVVVGNHDPELEGLRHQQRIYFANNPHAFGILEGINH 233 (236)
T ss_pred CCChHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEEEcCCcHHHHHhhcCCcEEEcCCCChhHHHHHHHh
Confidence 222333333221 1 2588999999999999999999999999999999999 88888888999998863
No 64
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.45 E-value=5.9e-07 Score=93.18 Aligned_cols=100 Identities=24% Similarity=0.281 Sum_probs=79.5
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecc-----------------cChhhHHHHHHHHhh
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSG-----------------VKPNEKKRFINELQN 781 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~-----------------~~p~~K~~~v~~l~~ 781 (932)
+++|++.+.++.|+++|++++++|+.....+..+++.+|+. .+++. ..|..|.+.++.+.+
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~--~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~ 157 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPD--YVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKR 157 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCC--eEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHH
Confidence 57899999999999999999999999999999999999986 33321 223466666666544
Q ss_pred C----CCEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhhcC
Q 002354 782 D----ENVVAMVGDGINDAAALASSHIGVAMGGGVGAASEVAS 820 (932)
Q Consensus 782 ~----g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad 820 (932)
+ .+.++||||+.||.+|++.||++++++......+.++|
T Consensus 158 ~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~~~~~~a~~ 200 (201)
T TIGR01491 158 ELNPSLTETVAVGDSKNDLPMFEVADISISLGDEGHADYLAKD 200 (201)
T ss_pred HhCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCCccchhhccc
Confidence 2 35699999999999999999999999755444555544
No 65
>PLN02954 phosphoserine phosphatase
Probab=98.40 E-value=2e-06 Score=91.06 Aligned_cols=114 Identities=22% Similarity=0.427 Sum_probs=86.0
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecc-------------------cChhhHHHHHHHH
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSG-------------------VKPNEKKRFINEL 779 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~-------------------~~p~~K~~~v~~l 779 (932)
++.|++.+.++.|++.|+++.++|+.....+..+.+.+|++...+++. .....|.+.++.+
T Consensus 84 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~~ 163 (224)
T PLN02954 84 RLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQHI 163 (224)
T ss_pred CCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHHH
Confidence 368999999999999999999999999999999999999974334431 0123587888777
Q ss_pred hhC--CCEEEEEcCCcccHHHHHh--CCeeEEecCc--hHHHHhhcCEEEeCCChhHHHHH
Q 002354 780 QND--ENVVAMVGDGINDAAALAS--SHIGVAMGGG--VGAASEVASVVLMGNRLSQLLVA 834 (932)
Q Consensus 780 ~~~--g~~v~~vGDg~ND~~al~~--A~vgIa~~~~--~~~a~~~ad~vl~~~~~~~i~~~ 834 (932)
.++ ...++||||+.||..|.+. +++.++.+.. .+.....+|+++. ++..+.+.
T Consensus 164 ~~~~~~~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~el~~~ 222 (224)
T PLN02954 164 KKKHGYKTMVMIGDGATDLEARKPGGADLFIGYGGVQVREAVAAKADWFVT--DFQDLIEV 222 (224)
T ss_pred HHHcCCCceEEEeCCHHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEEC--CHHHHHHh
Confidence 654 3579999999999999777 5666665532 2334556899884 56666554
No 66
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=98.39 E-value=2.5e-06 Score=91.93 Aligned_cols=136 Identities=14% Similarity=0.106 Sum_probs=98.6
Q ss_pred EEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC-------------------
Q 002354 701 LVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD------------------- 761 (932)
Q Consensus 701 ~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~------------------- 761 (932)
+++...|++|+.---=..++.|...++++++++.|+.++++||++...++.+.+++++...
T Consensus 3 li~tDlDGTLl~~~~~~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~p~~~I~~NGa~I~~~~~~~~ 82 (249)
T TIGR01485 3 LLVSDLDNTLVDHTDGDNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLTPDIWVTSVGSEIYYGGAEVP 82 (249)
T ss_pred EEEEcCCCcCcCCCCCChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCCCCEEEEcCCceEEeCCCCcC
Confidence 3455567888731111467889999999999999999999999999999999999987421
Q ss_pred --------------------------------------c--ee----------------------------c-----ccC
Q 002354 762 --------------------------------------K--VL----------------------------S-----GVK 768 (932)
Q Consensus 762 --------------------------------------~--v~----------------------------~-----~~~ 768 (932)
. ++ + .+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ldi~ 162 (249)
T TIGR01485 83 DQHWAEYLSEKWQRDIVVAITDKFEELKPQPDLEQRPHKVSFFLDPEAAPEVIKQLTEMLKETGLDVKLIYSSGKDLDIL 162 (249)
T ss_pred CHHHHHHHhcccCHHHHHHHHhcCcccccCCccccCCeeEEEEechhhhhHHHHHHHHHHHhcCCCEEEEEECCceEEEE
Confidence 0 00 0 011
Q ss_pred h--hhHHHHHHHHhhC----CCEEEEEcCCcccHHHHHh-CCeeEEecCchHHHHhhcC-------EEEeCCChhHHHHH
Q 002354 769 P--NEKKRFINELQND----ENVVAMVGDGINDAAALAS-SHIGVAMGGGVGAASEVAS-------VVLMGNRLSQLLVA 834 (932)
Q Consensus 769 p--~~K~~~v~~l~~~----g~~v~~vGDg~ND~~al~~-A~vgIa~~~~~~~a~~~ad-------~vl~~~~~~~i~~~ 834 (932)
| ..|...++.+.+. ...|+++||+.||.+|++. ++.|++|+|+.+..++.++ ++.....-+++.++
T Consensus 163 ~~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~na~~~~k~~~~~~~~~~~~~~~~~~~~Gi~e~ 242 (249)
T TIGR01485 163 PQGSGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSNAQEELLQWYDENAKDKIYHASERCAGGIIEA 242 (249)
T ss_pred eCCCChHHHHHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEECCCHHHHHHHHHhcccCcEEEecCCCcHHHHHH
Confidence 1 1233334443321 2469999999999999998 6799999999999997654 66666677888888
Q ss_pred HH
Q 002354 835 LE 836 (932)
Q Consensus 835 i~ 836 (932)
++
T Consensus 243 l~ 244 (249)
T TIGR01485 243 IA 244 (249)
T ss_pred HH
Confidence 76
No 67
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.31 E-value=3.8e-06 Score=88.41 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=86.6
Q ss_pred ccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecc-----------cCh------------hhHHH
Q 002354 718 DRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSG-----------VKP------------NEKKR 774 (932)
Q Consensus 718 D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~-----------~~p------------~~K~~ 774 (932)
.+++|++.+.++.|++.|+++.++|+........+.+.++.. +.+++. ..| ..|..
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~-~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~ 147 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEK-DRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPS 147 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCc-ccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHH
Confidence 368999999999999999999999999999999999888543 344431 112 24889
Q ss_pred HHHHHhhCCCEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhhcCEEEeCCChhHHHHHHH
Q 002354 775 FINELQNDENVVAMVGDGINDAAALASSHIGVAMGGGVGAASEVASVVLMGNRLSQLLVALE 836 (932)
Q Consensus 775 ~v~~l~~~g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl~~~~~~~i~~~i~ 836 (932)
+++.++.....++|||||.||..|++.||+.+|-+.-.+..++.---...-+++..|...++
T Consensus 148 ~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~~~ar~~l~~~~~~~~~~~~~~~~f~di~~~l~ 209 (214)
T TIGR03333 148 LIRKLSEPNDYHIVIGDSVTDVEAAKQSDLCFARDYLLNECEELGLNHAPFQDFYDVRKELE 209 (214)
T ss_pred HHHHHhhcCCcEEEEeCCHHHHHHHHhCCeeEehHHHHHHHHHcCCCccCcCCHHHHHHHHH
Confidence 99998888888999999999999999999977754222222221111222256777766654
No 68
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=98.28 E-value=3e-06 Score=89.51 Aligned_cols=114 Identities=19% Similarity=0.269 Sum_probs=85.2
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecc---c----------Ch----------hhHHHH
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSG---V----------KP----------NEKKRF 775 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~---~----------~p----------~~K~~~ 775 (932)
+++|++.+.++.|++.|+++.++|+-....+..+.+.+ +..+.+++. . .| ..|..+
T Consensus 74 ~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~ 152 (219)
T PRK09552 74 EIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSL 152 (219)
T ss_pred CcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHH
Confidence 57999999999999999999999999999999999998 754445532 1 11 248889
Q ss_pred HHHHhhCCCEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhh--cCEEEeCCChhHHHHHH
Q 002354 776 INELQNDENVVAMVGDGINDAAALASSHIGVAMGGGVGAASEV--ASVVLMGNRLSQLLVAL 835 (932)
Q Consensus 776 v~~l~~~g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~--ad~vl~~~~~~~i~~~i 835 (932)
++.++.....+.|||||.||+.|.+.||+.++-+.-.+.+++. +.+.+ +++..+...+
T Consensus 153 l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a~~~l~~~~~~~~~~~~~~--~~f~ei~~~l 212 (219)
T PRK09552 153 IRKLSDTNDFHIVIGDSITDLEAAKQADKVFARDFLITKCEELGIPYTPF--ETFHDVQTEL 212 (219)
T ss_pred HHHhccCCCCEEEEeCCHHHHHHHHHCCcceeHHHHHHHHHHcCCCcccc--CCHHHHHHHH
Confidence 9988888788999999999999999999977633111222222 33322 5677666654
No 69
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.28 E-value=1.5e-06 Score=89.45 Aligned_cols=79 Identities=32% Similarity=0.483 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecc-------------cChh-h--HHHHHHHH------
Q 002354 722 DDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSG-------------VKPN-E--KKRFINEL------ 779 (932)
Q Consensus 722 ~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~-------------~~p~-~--K~~~v~~l------ 779 (932)
+++.+.|+.++++|++++|+||+....++.+++.+|++...+++. .++. + |.+.++.+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~ 171 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIRDEE 171 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHHhhc
Confidence 777799999999999999999999999999999999986434332 2222 3 99999999
Q ss_pred hhCCCEEEEEcCCcccHHHHH
Q 002354 780 QNDENVVAMVGDGINDAAALA 800 (932)
Q Consensus 780 ~~~g~~v~~vGDg~ND~~al~ 800 (932)
+.....+.++|||.||.+||+
T Consensus 172 ~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 172 DIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp THTCCEEEEEESSGGGHHHHH
T ss_pred CCCCCeEEEEECCHHHHHHhC
Confidence 455789999999999999986
No 70
>PLN02382 probable sucrose-phosphatase
Probab=98.16 E-value=1.3e-05 Score=92.53 Aligned_cols=133 Identities=12% Similarity=0.108 Sum_probs=93.7
Q ss_pred EEEEEECCEEEEEEEecc--cccHHHHHHH-HHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC----------------
Q 002354 701 LVYVGVDNMLAGLIYVED--RIRDDAAHVV-NSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD---------------- 761 (932)
Q Consensus 701 ~~~va~~~~~lG~i~l~D--~lr~~~~~~i-~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~---------------- 761 (932)
.++...|++++.- .| ++.+...+++ +++++.|+.++++||++......+.+++++...
T Consensus 11 lI~sDLDGTLL~~---~~~~~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~~~~l~~~~~l~~p~~~I~~nGt~I~~~~~ 87 (413)
T PLN02382 11 MIVSDLDHTMVDH---HDPENLSLLRFNALWEAEYRHDSLLVFSTGRSPTLYKELRKEKPLLTPDITIMSVGTEIAYGES 87 (413)
T ss_pred EEEEcCCCcCcCC---CCccchhHHHHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHhCCCCCCCEEEEcCCcEEEeCCC
Confidence 4444567888742 13 4554455555 899999999999999999999999999986321
Q ss_pred -----------------------------------------c--ee---------------------------------c
Q 002354 762 -----------------------------------------K--VL---------------------------------S 765 (932)
Q Consensus 762 -----------------------------------------~--v~---------------------------------~ 765 (932)
. ++ .
T Consensus 88 ~~~d~~w~~~l~~~w~~~~v~~~~~~~~~l~~q~~~~~~~~Ki~~~~~~~~~~~~~~~l~~~~~~~g~~~~i~~s~~~~l 167 (413)
T PLN02382 88 MVPDHGWVEYLNKKWDREIVVEETSKFPELKLQPETEQRPHKVSFYVDKKKAQEVIKELSERLEKRGLDVKIIYSGGIDL 167 (413)
T ss_pred CccChhHHHHHhccCChhhHHHHHhcCCCcccCCcccCCCeEEEEEechHHhHHHHHHHHHHHHhcCCcEEEEEECCcEE
Confidence 0 00 0
Q ss_pred ccCh--hhHHHHHHHHhhC-------CCEEEEEcCCcccHHHHHhCC-eeEEecCchHHHHhhc--------CEEEe-CC
Q 002354 766 GVKP--NEKKRFINELQND-------ENVVAMVGDGINDAAALASSH-IGVAMGGGVGAASEVA--------SVVLM-GN 826 (932)
Q Consensus 766 ~~~p--~~K~~~v~~l~~~-------g~~v~~vGDg~ND~~al~~A~-vgIa~~~~~~~a~~~a--------d~vl~-~~ 826 (932)
.+.| -.|..-++.|.+. ...++++||+.||.+||+.++ .||+|+|+.+..++.+ +++.. ++
T Consensus 168 dI~p~g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam~NA~~elk~~a~~~~~~~~~~~~a~~~ 247 (413)
T PLN02382 168 DVLPQGAGKGQALAYLLKKLKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMVSNAQEELLQWYAENAKDNPKIIHATER 247 (413)
T ss_pred EEEeCCCCHHHHHHHHHHHhhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEEcCCcHHHHHHHHhhccCCCcEEEcCCC
Confidence 1112 1244445544333 247899999999999999999 6999999999999753 55544 45
Q ss_pred ChhHHHHHHH
Q 002354 827 RLSQLLVALE 836 (932)
Q Consensus 827 ~~~~i~~~i~ 836 (932)
+-++|.++++
T Consensus 248 ~~~GI~~al~ 257 (413)
T PLN02382 248 CAAGIIQAIG 257 (413)
T ss_pred CccHHHHHHH
Confidence 6788888876
No 71
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=98.11 E-value=9.9e-06 Score=84.23 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=75.5
Q ss_pred cccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecc------------------cChhhHHHHHHH
Q 002354 717 EDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSG------------------VKPNEKKRFINE 778 (932)
Q Consensus 717 ~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~------------------~~p~~K~~~v~~ 778 (932)
...+++++.+.++.++++|++++++|+.....+..+++.+|++ .+++. +..+.|.+.++.
T Consensus 85 ~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~--~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~ 162 (202)
T TIGR01490 85 ESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGID--NAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAE 162 (202)
T ss_pred HHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCc--ceEecceEEcCCCEEeCCccCCCCCChHHHHHHHH
Confidence 4578999999999999999999999999999999999999996 23221 224678877776
Q ss_pred Hhh-CC---CEEEEEcCCcccHHHHHhCCeeEEec
Q 002354 779 LQN-DE---NVVAMVGDGINDAAALASSHIGVAMG 809 (932)
Q Consensus 779 l~~-~g---~~v~~vGDg~ND~~al~~A~vgIa~~ 809 (932)
+.+ .+ ..+.++||+.||.+|++.|+.++++.
T Consensus 163 ~~~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~ 197 (202)
T TIGR01490 163 LLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVN 197 (202)
T ss_pred HHHHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeC
Confidence 543 33 36899999999999999999999886
No 72
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.10 E-value=5.7e-06 Score=83.96 Aligned_cols=81 Identities=27% Similarity=0.390 Sum_probs=67.9
Q ss_pred ccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceec-------------------ccChhhHHHHHHHHh
Q 002354 720 IRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLS-------------------GVKPNEKKRFINELQ 780 (932)
Q Consensus 720 lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~-------------------~~~p~~K~~~v~~l~ 780 (932)
+++++.+.++.+++.|++++++||.....+..+++.+|++. +++ ...+..|...++.++
T Consensus 74 ~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~--~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~~ 151 (177)
T TIGR01488 74 LRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDD--VFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKELL 151 (177)
T ss_pred cCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCch--heeeeEEECCCCEEeCccCCcccCCcchHHHHHHHHH
Confidence 57999999999999999999999999999999999999862 221 123477998988876
Q ss_pred hC----CCEEEEEcCCcccHHHHHhC
Q 002354 781 ND----ENVVAMVGDGINDAAALASS 802 (932)
Q Consensus 781 ~~----g~~v~~vGDg~ND~~al~~A 802 (932)
++ ...+.++|||.||.+|++.|
T Consensus 152 ~~~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 152 EESKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred HHhCCCHHHEEEEeCCHHHHHHHhcC
Confidence 54 35699999999999999875
No 73
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=98.07 E-value=1.6e-05 Score=86.42 Aligned_cols=133 Identities=21% Similarity=0.265 Sum_probs=92.9
Q ss_pred CCeEEEEEECCEEEEEEEe--cccccHHHHHHHHHHHh-CCCeEEEEcCCCHHHHHHHHHHcCCCC------------C-
Q 002354 698 NQSLVYVGVDNMLAGLIYV--EDRIRDDAAHVVNSLSS-QGIGVYMLSGDKKNSAEYVASLVGIPK------------D- 761 (932)
Q Consensus 698 g~~~~~va~~~~~lG~i~l--~D~lr~~~~~~i~~L~~-~Gi~v~~~TGd~~~~a~~ia~~~gi~~------------~- 761 (932)
....+++..||+++-...= .-.+.++++++|++|++ .|+.++++||++...+..+.+.+++.- .
T Consensus 13 ~~~li~~D~DGTLl~~~~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~ 92 (266)
T PRK10187 13 ANYAWFFDLDGTLAEIKPHPDQVVVPDNILQGLQLLATANDGALALISGRSMVELDALAKPYRFPLAGVHGAERRDINGK 92 (266)
T ss_pred CCEEEEEecCCCCCCCCCCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcccceEEEeCCCeeecCCCC
Confidence 3568888899998842110 12567899999999998 799999999999999999888776410 0
Q ss_pred -------------------------------------ceec---------------------------------ccCh--
Q 002354 762 -------------------------------------KVLS---------------------------------GVKP-- 769 (932)
Q Consensus 762 -------------------------------------~v~~---------------------------------~~~p-- 769 (932)
.++. ++.|
T Consensus 93 ~~~~~l~~~~~~~i~~~l~~~~~~~pg~~ve~k~~~~~~h~r~~~~~~~~~~~l~~~i~~~~~~~~~~~g~~~lEi~p~g 172 (266)
T PRK10187 93 THIVHLPDAIARDISVQLHTALAQLPGAELEAKGMAFALHYRQAPQHEDALLALAQRITQIWPQLALQPGKCVVEIKPRG 172 (266)
T ss_pred eeeccCChhHHHHHHHHHHHHhccCCCcEEEeCCcEEEEECCCCCccHHHHHHHHHHHHhhCCceEEeCCCEEEEeeCCC
Confidence 0000 1111
Q ss_pred hhHHHHHHHHhhC----CCEEEEEcCCcccHHHHHhC----CeeEEecCchHHHHhhcCEEEeCCChhHHHHHHH
Q 002354 770 NEKKRFINELQND----ENVVAMVGDGINDAAALASS----HIGVAMGGGVGAASEVASVVLMGNRLSQLLVALE 836 (932)
Q Consensus 770 ~~K~~~v~~l~~~----g~~v~~vGDg~ND~~al~~A----~vgIa~~~~~~~a~~~ad~vl~~~~~~~i~~~i~ 836 (932)
.+|...++.+.++ ...++++||+.||.+||+.+ +.||+||++. ..|++.+. +...+...+.
T Consensus 173 ~~Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~a~----~~A~~~l~--~~~~v~~~L~ 241 (266)
T PRK10187 173 TNKGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGISVKVGTGA----TQASWRLA--GVPDVWSWLE 241 (266)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCCeEEEECCCC----CcCeEeCC--CHHHHHHHHH
Confidence 1343334433222 24689999999999999999 9999999874 45777774 6666666654
No 74
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=98.06 E-value=1.3e-05 Score=82.14 Aligned_cols=90 Identities=19% Similarity=0.237 Sum_probs=74.4
Q ss_pred ccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC--ceecc-----------c------------ChhhH
Q 002354 718 DRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD--KVLSG-----------V------------KPNEK 772 (932)
Q Consensus 718 D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~--~v~~~-----------~------------~p~~K 772 (932)
-++.+++.+.++.|++.|++++++|+.+......+.+..|+... .+++. . ....|
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~K 150 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCCK 150 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCCH
Confidence 36889999999999999999999999999999999999998531 23321 0 11249
Q ss_pred HHHHHHHhhC-CCEEEEEcCCcccHHHHHhCCeeEE
Q 002354 773 KRFINELQND-ENVVAMVGDGINDAAALASSHIGVA 807 (932)
Q Consensus 773 ~~~v~~l~~~-g~~v~~vGDg~ND~~al~~A~vgIa 807 (932)
.++++.++++ ...++|+|||.||..|.+.||+-.|
T Consensus 151 ~~~~~~~~~~~~~~~i~iGD~~~D~~aa~~~d~~~a 186 (188)
T TIGR01489 151 GKVIHKLSEPKYQHIIYIGDGVTDVCPAKLSDVVFA 186 (188)
T ss_pred HHHHHHHHhhcCceEEEECCCcchhchHhcCCcccc
Confidence 9999999887 8899999999999999999987543
No 75
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=98.05 E-value=2.3e-05 Score=82.86 Aligned_cols=119 Identities=22% Similarity=0.281 Sum_probs=89.2
Q ss_pred ccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Cceecc-----cCh--hhHHHHHHHHhhCCCEEEE
Q 002354 718 DRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKVLSG-----VKP--NEKKRFINELQNDENVVAM 788 (932)
Q Consensus 718 D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v~~~-----~~p--~~K~~~v~~l~~~g~~v~~ 788 (932)
.++.|++.+.++.|++.|++++++|+........+.+.+|+.. +.+++. ..| +--..+++.++.....+++
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~ 171 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEMLF 171 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheEE
Confidence 4578999999999999999999999999999999999999853 222221 222 2224455555555678999
Q ss_pred EcCCcccHHHHHhCCe-eEEecC----chHHHHhhcCEEEeCCChhHHHHHHHHH
Q 002354 789 VGDGINDAAALASSHI-GVAMGG----GVGAASEVASVVLMGNRLSQLLVALELS 838 (932)
Q Consensus 789 vGDg~ND~~al~~A~v-gIa~~~----~~~~a~~~ad~vl~~~~~~~i~~~i~~g 838 (932)
|||+.||+.+.+.+++ +|.+.. ..+.....+++++ +++..+...++++
T Consensus 172 igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i--~~~~~l~~~l~~~ 224 (226)
T PRK13222 172 VGDSRNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVI--DHFAELLPLLGLA 224 (226)
T ss_pred ECCCHHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEE--CCHHHHHHHHHHh
Confidence 9999999999999999 566532 2344455788877 6888888877653
No 76
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=98.00 E-value=3.6e-05 Score=81.39 Aligned_cols=118 Identities=23% Similarity=0.336 Sum_probs=90.0
Q ss_pred cccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC--ceec-c------cChhhHHHHHHHHhhCCCEEE
Q 002354 717 EDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD--KVLS-G------VKPNEKKRFINELQNDENVVA 787 (932)
Q Consensus 717 ~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~--~v~~-~------~~p~~K~~~v~~l~~~g~~v~ 787 (932)
...+-|+++++++.|+++|++..++|+++...+..+.+.+|+... .+++ . -.|+......+.+....+.++
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l 166 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEAL 166 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheE
Confidence 446789999999999999999999999999999999999999632 2333 2 234444555555555545799
Q ss_pred EEcCCcccHHHHHhCC---eeEEecC--chHHHHhhcCEEEeCCChhHHHHHHH
Q 002354 788 MVGDGINDAAALASSH---IGVAMGG--GVGAASEVASVVLMGNRLSQLLVALE 836 (932)
Q Consensus 788 ~vGDg~ND~~al~~A~---vgIa~~~--~~~~a~~~ad~vl~~~~~~~i~~~i~ 836 (932)
||||..+|+.|-+.|+ +|+..|. ........+|+++. ++..+...+.
T Consensus 167 ~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi~--~~~el~~~l~ 218 (220)
T COG0546 167 MVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVID--SLAELLALLA 218 (220)
T ss_pred EECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEEC--CHHHHHHHHh
Confidence 9999999999999998 6666663 34566667999984 6777766543
No 77
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.95 E-value=3.3e-05 Score=73.79 Aligned_cols=92 Identities=22% Similarity=0.317 Sum_probs=70.0
Q ss_pred ecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC--CCceec-----------------------ccChh
Q 002354 716 VEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIP--KDKVLS-----------------------GVKPN 770 (932)
Q Consensus 716 l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~--~~~v~~-----------------------~~~p~ 770 (932)
...++.+++.+.+++|++.|++++++||.....+..+.+++|+. .+.+++ .-.++
T Consensus 21 ~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (139)
T cd01427 21 EELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPD 100 (139)
T ss_pred ccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchhhhhcccccccccccccccCCCCHH
Confidence 34588999999999999999999999999999999999999982 223332 22233
Q ss_pred hHHHHHHHHhhCCCEEEEEcCCcccHHHHHh-CCeeEE
Q 002354 771 EKKRFINELQNDENVVAMVGDGINDAAALAS-SHIGVA 807 (932)
Q Consensus 771 ~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~-A~vgIa 807 (932)
.+..+.+.+......++++||+.||..|++. ..-+|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~ 138 (139)
T cd01427 101 KLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVA 138 (139)
T ss_pred HHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceee
Confidence 3444555555456789999999999999998 444443
No 78
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.93 E-value=5.3e-05 Score=79.04 Aligned_cols=115 Identities=18% Similarity=0.297 Sum_probs=84.3
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Cceecc-----cCh--hhHHHHHHHHhhCCCEEEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKVLSG-----VKP--NEKKRFINELQNDENVVAMV 789 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v~~~-----~~p--~~K~~~v~~l~~~g~~v~~v 789 (932)
++.+++.+++++|+++|+++.++|+.....+..+.+.+|+.. +.+++. ..| +--..+++.++-....++||
T Consensus 75 ~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l~i 154 (205)
T TIGR01454 75 EVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAVMV 154 (205)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheEEE
Confidence 678999999999999999999999999999999999999953 233321 122 22234444444446779999
Q ss_pred cCCcccHHHHHhCCeeEE-e--c--CchHHHHhhcCEEEeCCChhHHHHHH
Q 002354 790 GDGINDAAALASSHIGVA-M--G--GGVGAASEVASVVLMGNRLSQLLVAL 835 (932)
Q Consensus 790 GDg~ND~~al~~A~vgIa-~--~--~~~~~a~~~ad~vl~~~~~~~i~~~i 835 (932)
||+.+|+.+-+.+++... + | +..+..++.+|+++ +++..+..++
T Consensus 155 gD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~--~~~~~l~~~~ 203 (205)
T TIGR01454 155 GDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLL--RKPQSLLALC 203 (205)
T ss_pred cCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeee--CCHHHHHHHh
Confidence 999999999999999643 3 3 23344566789887 4666666544
No 79
>PRK08238 hypothetical protein; Validated
Probab=97.85 E-value=0.00012 Score=85.84 Aligned_cols=94 Identities=16% Similarity=0.254 Sum_probs=75.6
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceec-----ccChhhHHHHHHHHhhCCCEEEEEcCCc
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLS-----GVKPNEKKRFINELQNDENVVAMVGDGI 793 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~-----~~~p~~K~~~v~~l~~~g~~v~~vGDg~ 793 (932)
+++|++.+.+++++++|++++++|+-+...++.+++.+|+. +.+.+ +..|+.|.+.+++...+ +.+.++||..
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGlF-d~Vigsd~~~~~kg~~K~~~l~~~l~~-~~~~yvGDS~ 149 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGLF-DGVFASDGTTNLKGAAKAAALVEAFGE-RGFDYAGNSA 149 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC-CEEEeCCCccccCCchHHHHHHHHhCc-cCeeEecCCH
Confidence 46899999999999999999999999999999999999983 24443 34667787665543322 2367899999
Q ss_pred ccHHHHHhCCeeEEecCchHH
Q 002354 794 NDAAALASSHIGVAMGGGVGA 814 (932)
Q Consensus 794 ND~~al~~A~vgIa~~~~~~~ 814 (932)
||.++++.|+-.++++.+...
T Consensus 150 ~Dlp~~~~A~~av~Vn~~~~l 170 (479)
T PRK08238 150 ADLPVWAAARRAIVVGASPGV 170 (479)
T ss_pred HHHHHHHhCCCeEEECCCHHH
Confidence 999999999999999865543
No 80
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.78 E-value=4.7e-05 Score=91.34 Aligned_cols=71 Identities=30% Similarity=0.416 Sum_probs=66.6
Q ss_pred EEEEEecCCCChhhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeCCCccccchhhhhhHHHHHHHHHhcCcccccccCC
Q 002354 127 VIILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAKVIPNWQRQLGEALAKHLTSCGFKSSLRDMG 205 (932)
Q Consensus 127 ~~~l~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~~~~~~~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~ 205 (932)
+..++|.||+|++|+..||+.|++++||.++.|.+..+.+.+.|||...+. +.+.+.++++||.+++.+..
T Consensus 70 ~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~--------~~~~e~ie~~gf~a~~i~~~ 140 (951)
T KOG0207|consen 70 KCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSP--------DSIAESIEDLGFSAELIESV 140 (951)
T ss_pred eeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCc--------hhHHHHHHhcCccceehhcc
Confidence 678999999999999999999999999999999999999999999999887 88999999999999876553
No 81
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=97.76 E-value=0.00018 Score=76.27 Aligned_cols=53 Identities=17% Similarity=0.336 Sum_probs=45.6
Q ss_pred EEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCC
Q 002354 702 VYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGI 758 (932)
Q Consensus 702 ~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi 758 (932)
+++..|++++- .+...+++.++|++|+++|++++++||++...+..+.+++|+
T Consensus 2 i~~DlDGTLl~----~~~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~ 54 (225)
T TIGR02461 2 IFTDLDGTLLP----PGYEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGV 54 (225)
T ss_pred EEEeCCCCCcC----CCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 45566777663 456777899999999999999999999999999999999997
No 82
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=97.74 E-value=0.00017 Score=75.69 Aligned_cols=115 Identities=18% Similarity=0.256 Sum_probs=82.7
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Cceec-c------cChhhHHHHHHHHhhCCCEEEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKVLS-G------VKPNEKKRFINELQNDENVVAMV 789 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v~~-~------~~p~~K~~~v~~l~~~g~~v~~v 789 (932)
++.|++.+.++.|+++|+++.++|+.....+..+.+.+|+.. +.+++ . -.|+--..+++.+......++||
T Consensus 82 ~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~i 161 (214)
T PRK13288 82 TEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEALMV 161 (214)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEEEE
Confidence 367999999999999999999999999999999999999963 12222 1 12232344445554445679999
Q ss_pred cCCcccHHHHHhCCeeE-Ee--cC-chH-HHHhhcCEEEeCCChhHHHHHH
Q 002354 790 GDGINDAAALASSHIGV-AM--GG-GVG-AASEVASVVLMGNRLSQLLVAL 835 (932)
Q Consensus 790 GDg~ND~~al~~A~vgI-a~--~~-~~~-~a~~~ad~vl~~~~~~~i~~~i 835 (932)
||..+|..|-++|++-. ++ |. ..+ .....+|+++ +++..+..++
T Consensus 162 GDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i--~~~~~l~~~i 210 (214)
T PRK13288 162 GDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFML--DKMSDLLAIV 210 (214)
T ss_pred CCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEE--CCHHHHHHHH
Confidence 99999999999999853 23 32 222 3344688876 4777776654
No 83
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.72 E-value=0.00024 Score=76.71 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=49.1
Q ss_pred eEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCC
Q 002354 700 SLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGI 758 (932)
Q Consensus 700 ~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi 758 (932)
.+++...|++++- -.+...+.+.++|++|+++||.++++||+.......+.+++|+
T Consensus 2 KLIftDLDGTLLd---~~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl 57 (302)
T PRK12702 2 RLVLSSLDGSLLD---LEFNSYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRL 57 (302)
T ss_pred cEEEEeCCCCCcC---CCCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC
Confidence 3567778888874 3456788899999999999999999999999999999999997
No 84
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=97.70 E-value=0.00021 Score=78.10 Aligned_cols=117 Identities=17% Similarity=0.222 Sum_probs=83.2
Q ss_pred ccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Cceec-ccChhhH------HHHHHHHhhCCCEEEE
Q 002354 718 DRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKVLS-GVKPNEK------KRFINELQNDENVVAM 788 (932)
Q Consensus 718 D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v~~-~~~p~~K------~~~v~~l~~~g~~v~~ 788 (932)
.++.|++.++++.|++.|++++++|+.+...+..+.++.|+.. +.+++ ...+..| ..+.+.+.-....++|
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l~ 179 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSLF 179 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEEE
Confidence 4678999999999999999999999999999999999999853 12322 2222222 2333333334567999
Q ss_pred EcCCcccHHHHHhCCee-EEecC----chHHHHhhcCEEEeCCChhHHHHHHH
Q 002354 789 VGDGINDAAALASSHIG-VAMGG----GVGAASEVASVVLMGNRLSQLLVALE 836 (932)
Q Consensus 789 vGDg~ND~~al~~A~vg-Ia~~~----~~~~a~~~ad~vl~~~~~~~i~~~i~ 836 (932)
|||+.||+.+.+.|++. +++.. ..+.....+|+++ +++..+.+++.
T Consensus 180 IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi--~~l~el~~~~~ 230 (272)
T PRK13223 180 VGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVI--DDLRALLPGCA 230 (272)
T ss_pred ECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEE--CCHHHHHHHHh
Confidence 99999999999999983 44432 2333445788888 46777765533
No 85
>PTZ00174 phosphomannomutase; Provisional
Probab=97.66 E-value=0.00022 Score=76.84 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=44.0
Q ss_pred CeEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHH
Q 002354 699 QSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVAS 754 (932)
Q Consensus 699 ~~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~ 754 (932)
..++++..||+++. =..++.+.++++|++++++|++++++||++........+
T Consensus 5 ~klia~DlDGTLL~---~~~~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 5 KTILLFDVDGTLTK---PRNPITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred CeEEEEECcCCCcC---CCCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 46777888998872 233689999999999999999999999999997776654
No 86
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=97.60 E-value=0.00051 Score=74.24 Aligned_cols=118 Identities=18% Similarity=0.261 Sum_probs=83.6
Q ss_pred ccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC--CCceecc------------c-Ch----hhHHHHHHH
Q 002354 718 DRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIP--KDKVLSG------------V-KP----NEKKRFINE 778 (932)
Q Consensus 718 D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~--~~~v~~~------------~-~p----~~K~~~v~~ 778 (932)
-+++|++.+.++.|++.|+++.++||-....+..+.+++|+. ...++++ . .| ..|.+.+..
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~~ 199 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVAL 199 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHHH
Confidence 357999999999999999999999999999999999999984 2234222 1 12 346554432
Q ss_pred -----Hh--hCCCEEEEEcCCcccHHHHHhC---CeeEEec--Cc-----hHHHHhhcCEEEeCCChhHHHHHH
Q 002354 779 -----LQ--NDENVVAMVGDGINDAAALASS---HIGVAMG--GG-----VGAASEVASVVLMGNRLSQLLVAL 835 (932)
Q Consensus 779 -----l~--~~g~~v~~vGDg~ND~~al~~A---~vgIa~~--~~-----~~~a~~~ad~vl~~~~~~~i~~~i 835 (932)
+. .....++++|||.||+.|..-. .--+.+| |. -+.-+++-|||+.+|.--.++..|
T Consensus 200 ~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~igfln~~~e~~l~~y~~~~Divl~~D~t~~v~~~i 273 (277)
T TIGR01544 200 RNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQDETLEVANSI 273 (277)
T ss_pred HHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEEEecccCHHHHHHHHHHhCCEEEECCCCchHHHHH
Confidence 22 2346799999999999997644 2234444 32 234567889999987655555544
No 87
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.58 E-value=0.00011 Score=92.77 Aligned_cols=64 Identities=34% Similarity=0.583 Sum_probs=54.1
Q ss_pred cEEEEEecCCCChhhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeCCCccccchhhhhhHHHHHHHHHhcCcccccc
Q 002354 126 DVIILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAKVIPNWQRQLGEALAKHLTSCGFKSSLR 202 (932)
Q Consensus 126 ~~~~l~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~~~~~~~~~~~~~~~~~i~~~i~~~Gy~~~~~ 202 (932)
.++++.|+||+|++|+.+||++|++++||.+++||+. +..+..+ .++ +.+.++++++||++...
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~---~~~--------~~i~~~i~~~Gy~~~~~ 66 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGT---ASA--------EALIETIKQAGYDASVS 66 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEec---CCH--------HHHHHHHHhcCCccccc
Confidence 4689999999999999999999999999999999995 4555533 233 78999999999998753
No 88
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.58 E-value=0.00033 Score=73.27 Aligned_cols=113 Identities=17% Similarity=0.214 Sum_probs=79.9
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Cceecc-----cCh--hhHHHHHHHHhhCCCEEEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKVLSG-----VKP--NEKKRFINELQNDENVVAMV 789 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v~~~-----~~p--~~K~~~v~~l~~~g~~v~~v 789 (932)
++.|++.+.++.|+++|+++.++|+.+...+..+.+.+|+.. +.+++. ..| +-=....+.+.-....++||
T Consensus 85 ~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~i 164 (213)
T TIGR01449 85 SVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMVYV 164 (213)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeEEe
Confidence 578999999999999999999999999999999999999852 223322 122 11133333443345679999
Q ss_pred cCCcccHHHHHhCCeeEE-e--cCc--hHHHHhhcCEEEeCCChhHHHH
Q 002354 790 GDGINDAAALASSHIGVA-M--GGG--VGAASEVASVVLMGNRLSQLLV 833 (932)
Q Consensus 790 GDg~ND~~al~~A~vgIa-~--~~~--~~~a~~~ad~vl~~~~~~~i~~ 833 (932)
||..||+.+.+.|++-.. + |.. .+.....+|+++ +++..+..
T Consensus 165 gDs~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i--~~~~~l~~ 211 (213)
T TIGR01449 165 GDSRVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLY--DSLNELPP 211 (213)
T ss_pred CCCHHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEe--CCHHHHHh
Confidence 999999999999998754 3 322 223334688877 46666544
No 89
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.58 E-value=0.00038 Score=56.22 Aligned_cols=65 Identities=18% Similarity=0.290 Sum_probs=54.9
Q ss_pred EEEEEecCCCChhhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeCCCccccchhhhhhHHHHHHHHHhcCccc
Q 002354 127 VIILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAKVIPNWQRQLGEALAKHLTSCGFKS 199 (932)
Q Consensus 127 ~~~l~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~~~~~~~~~~~~~~~~~i~~~i~~~Gy~~ 199 (932)
+..+.|.||+|.+|+..+++.+++.+++..+.+++..+.+.+.|++...+. ..+...+++.||.+
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~ 67 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATE--------ICIAEAILDAGYEV 67 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCH--------HHHHHHHHHcCCCc
Confidence 456899999999999999999999999999999999999999997654443 55666678888864
No 90
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.56 E-value=0.00046 Score=82.32 Aligned_cols=57 Identities=16% Similarity=0.224 Sum_probs=48.0
Q ss_pred CeEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCC
Q 002354 699 QSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGI 758 (932)
Q Consensus 699 ~~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi 758 (932)
..+++...|++++.- .+.+.+.+.++|++|+++|+.++++||++...+..+.+++|+
T Consensus 416 ~KLIfsDLDGTLLd~---d~~i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl 472 (694)
T PRK14502 416 KKIVYTDLDGTLLNP---LTYSYSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGI 472 (694)
T ss_pred eeEEEEECcCCCcCC---CCccCHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCC
Confidence 357777889988742 223556789999999999999999999999999999999986
No 91
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=97.54 E-value=0.00055 Score=72.27 Aligned_cols=54 Identities=22% Similarity=0.358 Sum_probs=43.9
Q ss_pred EEEEECCEEEEEEEeccc-ccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 002354 702 VYVGVDNMLAGLIYVEDR-IRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIP 759 (932)
Q Consensus 702 ~~va~~~~~lG~i~l~D~-lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~ 759 (932)
++...||+++. .|. ..+.++++|++|+++|++++++||++...+..+.+++|++
T Consensus 2 i~~DlDGTLL~----~~~~~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 2 VFSDLDGTLLD----SHSYDWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred EEEeCCCCCcC----CCCCCcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 34556777663 233 4455999999999999999999999999999999999975
No 92
>PLN02957 copper, zinc superoxide dismutase
Probab=97.45 E-value=0.00041 Score=73.99 Aligned_cols=68 Identities=29% Similarity=0.403 Sum_probs=58.6
Q ss_pred ccEEEEEecCCCChhhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeCCCccccchhhhhhHHHHHHHHHhcCcccccccC
Q 002354 125 SDVIILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAKVIPNWQRQLGEALAKHLTSCGFKSSLRDM 204 (932)
Q Consensus 125 ~~~~~l~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~~~~~~~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 204 (932)
.+++.+.+ +|+|++|+..|++.|++++||..+.+|+..+++.|.++. .. +.+.+++++.||.+.+...
T Consensus 5 ~~~~~~~V-gMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~---~~--------~~I~~aIe~~Gy~a~~~~~ 72 (238)
T PLN02957 5 ELLTEFMV-DMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSS---PV--------KAMTAALEQTGRKARLIGQ 72 (238)
T ss_pred cEEEEEEE-CccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecC---CH--------HHHHHHHHHcCCcEEEecC
Confidence 45677888 799999999999999999999999999999999999842 22 6788999999999876654
No 93
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=97.37 E-value=0.00064 Score=71.84 Aligned_cols=112 Identities=17% Similarity=0.210 Sum_probs=77.7
Q ss_pred ccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Cceecc-----cChhhHHHHHHHHhh---CCCEEE
Q 002354 718 DRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKVLSG-----VKPNEKKRFINELQN---DENVVA 787 (932)
Q Consensus 718 D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v~~~-----~~p~~K~~~v~~l~~---~g~~v~ 787 (932)
-++.|++.++++.|+++|+++.++|+........+.+.+|+.. +.+++. -.|+-. -+.+.+++ ..+.++
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~-~~~~~~~~~~~~~~~~~ 169 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPE-VYLNCAAKLGVDPLTCV 169 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCHH-HHHHHHHHcCCCHHHeE
Confidence 4678999999999999999999999999999999999999853 122221 122211 22233333 346799
Q ss_pred EEcCCcccHHHHHhCCeeEEe-cC---chHHHHhhcCEEEeCCChhHHH
Q 002354 788 MVGDGINDAAALASSHIGVAM-GG---GVGAASEVASVVLMGNRLSQLL 832 (932)
Q Consensus 788 ~vGDg~ND~~al~~A~vgIa~-~~---~~~~a~~~ad~vl~~~~~~~i~ 832 (932)
||||..||+.+-+.|++.... .. ..+.-...+|+++. ++..+.
T Consensus 170 ~igDs~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~~--~~~dl~ 216 (222)
T PRK10826 170 ALEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKLE--SLTELT 216 (222)
T ss_pred EEcCChhhHHHHHHcCCEEEEecCCccCchhhhhhhheecc--CHHHHh
Confidence 999999999999999987544 22 22222345777663 555543
No 94
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.35 E-value=0.0015 Score=71.37 Aligned_cols=114 Identities=19% Similarity=0.185 Sum_probs=81.1
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC--ceec-ccChhhHHHHHH----HHhhCCCEEEEEcC
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD--KVLS-GVKPNEKKRFIN----ELQNDENVVAMVGD 791 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~--~v~~-~~~p~~K~~~v~----~l~~~g~~v~~vGD 791 (932)
++.|++.+.++.|+++|+++.++|+.+...+..+.+.+|+... .+.+ ...+ .|.+.+. .+.-....++||||
T Consensus 142 ~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~~~~~~-~k~~~~~~~l~~~~~~p~~~l~IGD 220 (273)
T PRK13225 142 QLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQAGTPIL-SKRRALSQLVAREGWQPAAVMYVGD 220 (273)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEecCCCC-CCHHHHHHHHHHhCcChhHEEEECC
Confidence 5679999999999999999999999999999999999998632 1221 1111 1333333 23223467999999
Q ss_pred CcccHHHHHhCCeeEE-e--cCchH--HHHhhcCEEEeCCChhHHHHHH
Q 002354 792 GINDAAALASSHIGVA-M--GGGVG--AASEVASVVLMGNRLSQLLVAL 835 (932)
Q Consensus 792 g~ND~~al~~A~vgIa-~--~~~~~--~a~~~ad~vl~~~~~~~i~~~i 835 (932)
+.+|+.+-+.|++-.. + |.... .....+|+++ +++..+..++
T Consensus 221 s~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i--~~~~eL~~~~ 267 (273)
T PRK13225 221 ETRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLL--ETPSDLLQAV 267 (273)
T ss_pred CHHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEE--CCHHHHHHHH
Confidence 9999999999998643 2 32222 2334689887 5777777654
No 95
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.33 E-value=0.0011 Score=63.79 Aligned_cols=105 Identities=17% Similarity=0.242 Sum_probs=74.7
Q ss_pred EEEEEECCEEEEEEEe-----cccccHHHHHHHHHHHhCCCeEEEEcCCC--------HHHHHHHHHHcCCCCCceec-c
Q 002354 701 LVYVGVDNMLAGLIYV-----EDRIRDDAAHVVNSLSSQGIGVYMLSGDK--------KNSAEYVASLVGIPKDKVLS-G 766 (932)
Q Consensus 701 ~~~va~~~~~lG~i~l-----~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~--------~~~a~~ia~~~gi~~~~v~~-~ 766 (932)
.+.+..|+++..-... +-++.+++.++++.|++.|++++++|+.. ......+.+.+|+....++. .
T Consensus 2 ~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 81 (132)
T TIGR01662 2 GVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVLYACP 81 (132)
T ss_pred EEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 4566777877742111 23677999999999999999999999988 77888899999986332221 1
Q ss_pred --cCh--hhHHHHHHHHh-hCCCEEEEEcC-CcccHHHHHhCCee
Q 002354 767 --VKP--NEKKRFINELQ-NDENVVAMVGD-GINDAAALASSHIG 805 (932)
Q Consensus 767 --~~p--~~K~~~v~~l~-~~g~~v~~vGD-g~ND~~al~~A~vg 805 (932)
..| +-=..+++.++ -....++|||| ..+|+.+-+.+++-
T Consensus 82 ~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~ 126 (132)
T TIGR01662 82 HCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLA 126 (132)
T ss_pred CCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCe
Confidence 123 21134444442 44578999999 59999999998874
No 96
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.31 E-value=0.0013 Score=69.27 Aligned_cols=115 Identities=23% Similarity=0.243 Sum_probs=80.7
Q ss_pred ccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC----CCceeccc-----Ch--hhHHHHHHHHhhC-CCE
Q 002354 718 DRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIP----KDKVLSGV-----KP--NEKKRFINELQND-ENV 785 (932)
Q Consensus 718 D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~----~~~v~~~~-----~p--~~K~~~v~~l~~~-g~~ 785 (932)
.++.+|+.+.++.|+++|+++.++|+.....+..+.+.+|+. .+.+++.- .| +-=...++.+.-. ...
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 165 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQS 165 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChhH
Confidence 478999999999999999999999999999999999999986 23343321 23 2112333333333 367
Q ss_pred EEEEcCCcccHHHHHhCCeeE--EecCc--h-HH-HHhhcCEEEeCCChhHHHHH
Q 002354 786 VAMVGDGINDAAALASSHIGV--AMGGG--V-GA-ASEVASVVLMGNRLSQLLVA 834 (932)
Q Consensus 786 v~~vGDg~ND~~al~~A~vgI--a~~~~--~-~~-a~~~ad~vl~~~~~~~i~~~ 834 (932)
++||||+.+|+.+-+.|++.. ++..+ . +. ....+|+++ +++..+..+
T Consensus 166 ~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i--~~~~~l~~~ 218 (220)
T TIGR03351 166 VAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVL--DSVADLPAL 218 (220)
T ss_pred eEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceee--cCHHHHHHh
Confidence 999999999999999999986 33222 1 22 233577776 356665544
No 97
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.31 E-value=0.00077 Score=70.16 Aligned_cols=53 Identities=11% Similarity=0.288 Sum_probs=44.5
Q ss_pred EEEEECCEEEEEEEec-ccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcC
Q 002354 702 VYVGVDNMLAGLIYVE-DRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVG 757 (932)
Q Consensus 702 ~~va~~~~~lG~i~l~-D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~g 757 (932)
+++..|++++. =. -++.+++.++|++|++.|++++++||+....+..+.+.++
T Consensus 2 i~~D~DgTL~~---~~~~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~ 55 (204)
T TIGR01484 2 LFFDLDGTLLD---PNAHELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLP 55 (204)
T ss_pred EEEeCcCCCcC---CCCCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCC
Confidence 45667888774 11 2588999999999999999999999999999999998865
No 98
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=97.27 E-value=0.0013 Score=69.90 Aligned_cols=115 Identities=14% Similarity=0.101 Sum_probs=82.1
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Cceec-c------cChhhHHHHHHHHhhCCCEEEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKVLS-G------VKPNEKKRFINELQNDENVVAMV 789 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v~~-~------~~p~~K~~~v~~l~~~g~~v~~v 789 (932)
++.|++.+.++.|++.|+++.++|+.+...+..+-+.+|+.. +.+.+ . -.|+-=..+++.+.-....++||
T Consensus 95 ~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l~I 174 (229)
T PRK13226 95 QLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCVYV 174 (229)
T ss_pred eeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhEEEe
Confidence 568999999999999999999999999998888889999853 12222 1 12222244555555556789999
Q ss_pred cCCcccHHHHHhCCeeE-EecCc----h-HHHHhhcCEEEeCCChhHHHHHH
Q 002354 790 GDGINDAAALASSHIGV-AMGGG----V-GAASEVASVVLMGNRLSQLLVAL 835 (932)
Q Consensus 790 GDg~ND~~al~~A~vgI-a~~~~----~-~~a~~~ad~vl~~~~~~~i~~~i 835 (932)
||+.||+.+-+.|++.. ++..| . ......+|+++ +++..+.+.+
T Consensus 175 GDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i--~~~~el~~~~ 224 (229)
T PRK13226 175 GDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLV--EQPQLLWNPA 224 (229)
T ss_pred CCCHHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeee--CCHHHHHHHh
Confidence 99999999999999874 33221 1 12234688888 4666665543
No 99
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.00073 Score=67.39 Aligned_cols=67 Identities=25% Similarity=0.354 Sum_probs=57.1
Q ss_pred cEEEEEecCCCChhhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeCCCccccchhhhhhHHHHHHHHHhcCcccccccC
Q 002354 126 DVIILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAKVIPNWQRQLGEALAKHLTSCGFKSSLRDM 204 (932)
Q Consensus 126 ~~~~l~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~~~~~~~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 204 (932)
..++|.|+ |+|.+|+..|++.|+.++||.+++|++..+.+.|.-... + .++.++|+..|-++.++..
T Consensus 7 ~~~efaV~-M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p---~--------s~i~~~le~tGr~Avl~G~ 73 (247)
T KOG4656|consen 7 YEAEFAVQ-MTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVP---P--------SEIQNTLENTGRDAVLRGA 73 (247)
T ss_pred eeEEEEEe-chhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCC---h--------HHHHHHHHhhChheEEecC
Confidence 45677765 999999999999999999999999999999999974322 2 6899999999998887655
No 100
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=97.22 E-value=0.0016 Score=68.25 Aligned_cols=91 Identities=13% Similarity=0.067 Sum_probs=70.9
Q ss_pred cccHHHHHHHH-HHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC-Cceec--------------ccChhhHHHHHHHH-hh
Q 002354 719 RIRDDAAHVVN-SLSSQGIGVYMLSGDKKNSAEYVASLVGIPK-DKVLS--------------GVKPNEKKRFINEL-QN 781 (932)
Q Consensus 719 ~lr~~~~~~i~-~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~-~~v~~--------------~~~p~~K~~~v~~l-~~ 781 (932)
.+.|++.+.|+ .++++|++++++|+-....++.+++..++.. +++.+ .+.-++|...++.. ..
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~~~~~ 173 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHRLNLIASQIERGNGGWVLPLRCLGHEKVAQLEQKIGS 173 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccccCcEEEEEeEEeCCceEcCccCCChHHHHHHHHHhCC
Confidence 46899999995 8899999999999999999999999855411 12221 14457888877654 32
Q ss_pred CCCEEEEEcCCcccHHHHHhCCeeEEec
Q 002354 782 DENVVAMVGDGINDAAALASSHIGVAMG 809 (932)
Q Consensus 782 ~g~~v~~vGDg~ND~~al~~A~vgIa~~ 809 (932)
......+-||+.||.|||+.||..+++.
T Consensus 174 ~~~~~~aYsDS~~D~pmL~~a~~~~~Vn 201 (210)
T TIGR01545 174 PLKLYSGYSDSKQDNPLLAFCEHRWRVS 201 (210)
T ss_pred ChhheEEecCCcccHHHHHhCCCcEEEC
Confidence 3345568899999999999999999996
No 101
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=97.21 E-value=0.0015 Score=81.27 Aligned_cols=137 Identities=18% Similarity=0.182 Sum_probs=94.3
Q ss_pred HHhCCCeEEEEEECCEEEEEEEe--cccccHHHHHHHHHHHh-CCCeEEEEcCCCHHHHHHHHHHcCCCC----------
Q 002354 694 EDLMNQSLVYVGVDNMLAGLIYV--EDRIRDDAAHVVNSLSS-QGIGVYMLSGDKKNSAEYVASLVGIPK---------- 760 (932)
Q Consensus 694 ~~~~g~~~~~va~~~~~lG~i~l--~D~lr~~~~~~i~~L~~-~Gi~v~~~TGd~~~~a~~ia~~~gi~~---------- 760 (932)
+.....+++++.+||+++....- ...+.+++.+++++|.+ .|+.|+++||++..........+++.-
T Consensus 487 y~~~~~rLi~~D~DGTL~~~~~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~~l~liaenG~~i~~ 566 (726)
T PRK14501 487 YRAASRRLLLLDYDGTLVPFAPDPELAVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDLPIHLVAEHGAWSRA 566 (726)
T ss_pred HHhccceEEEEecCccccCCCCCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCCCeEEEEeCCEEEeC
Confidence 44456789999999999864211 12467899999999999 599999999999999988776565410
Q ss_pred -----------C------------------------------ceec-ccC------------------------------
Q 002354 761 -----------D------------------------------KVLS-GVK------------------------------ 768 (932)
Q Consensus 761 -----------~------------------------------~v~~-~~~------------------------------ 768 (932)
+ .++. +..
T Consensus 567 ~~~~w~~~~~~~~~w~~~v~~il~~~~~~~~gs~ie~k~~~l~~~~r~~d~~~~~~~a~~l~~~l~~~~~~~~~~v~~g~ 646 (726)
T PRK14501 567 PGGEWQLLEPVATEWKDAVRPILEEFVDRTPGSFIEEKEASLAWHYRNADPELGEARANELILALSSLLSNAPLEVLRGN 646 (726)
T ss_pred CCCceEECCCcchhHHHHHHHHHHHHHhcCCCcEEEEcceEEEEEccCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEECC
Confidence 0 0000 011
Q ss_pred ------h--hhHHHHHHHHhhC--CCEEEEEcCCcccHHHHHhC---CeeEEecCchHHHHhhcCEEEeCCChhHHHHHH
Q 002354 769 ------P--NEKKRFINELQND--ENVVAMVGDGINDAAALASS---HIGVAMGGGVGAASEVASVVLMGNRLSQLLVAL 835 (932)
Q Consensus 769 ------p--~~K~~~v~~l~~~--g~~v~~vGDg~ND~~al~~A---~vgIa~~~~~~~a~~~ad~vl~~~~~~~i~~~i 835 (932)
| -+|...++.+.+. ...++++||+.||.+||+.+ +.+|+||++ +..|++++.+ -+.|..++
T Consensus 647 ~~veV~p~~vnKG~al~~ll~~~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~~----~s~A~~~l~~--~~eV~~~L 720 (726)
T PRK14501 647 KVVEVRPAGVNKGRAVRRLLEAGPYDFVLAIGDDTTDEDMFRALPETAITVKVGPG----ESRARYRLPS--QREVRELL 720 (726)
T ss_pred eEEEEEECCCCHHHHHHHHHhcCCCCEEEEECCCCChHHHHHhcccCceEEEECCC----CCcceEeCCC--HHHHHHHH
Confidence 1 1344444444331 24799999999999999986 688999874 5678888864 35566665
Q ss_pred H
Q 002354 836 E 836 (932)
Q Consensus 836 ~ 836 (932)
+
T Consensus 721 ~ 721 (726)
T PRK14501 721 R 721 (726)
T ss_pred H
Confidence 4
No 102
>PLN02580 trehalose-phosphatase
Probab=97.21 E-value=0.0028 Score=71.65 Aligned_cols=77 Identities=12% Similarity=0.238 Sum_probs=52.9
Q ss_pred HHHhhcCCCCchhhhHHHHHhCCCeEEEEEECCEEEEEEEecc--cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHH
Q 002354 676 DWLRSHGVDTSTFQEVEMEDLMNQSLVYVGVDNMLAGLIYVED--RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVA 753 (932)
Q Consensus 676 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~va~~~~~lG~i~l~D--~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia 753 (932)
.|+.++-.....++....+......++++.+||++.-+..--| .+.++.++++++|.+. ..|.|+||+......++.
T Consensus 96 ~~~~~~p~al~~~~~~~~~~~~k~~~LfLDyDGTLaPIv~~Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~l 174 (384)
T PLN02580 96 TWMLKYPSALTSFEQIANFAKGKKIALFLDYDGTLSPIVDDPDRALMSDAMRSAVKNVAKY-FPTAIISGRSRDKVYELV 174 (384)
T ss_pred HHHHhCcHHHHHHHHHHHHhhcCCeEEEEecCCccCCCCCCcccccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHHh
Confidence 4555543323334444445555678889999999987552111 3478999999999988 489999999877765554
No 103
>PRK11590 hypothetical protein; Provisional
Probab=97.20 E-value=0.0022 Score=67.29 Aligned_cols=93 Identities=12% Similarity=0.007 Sum_probs=72.9
Q ss_pred cccHHHHHHH-HHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC-Cceec--------------ccChhhHHHHHHHH-hh
Q 002354 719 RIRDDAAHVV-NSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK-DKVLS--------------GVKPNEKKRFINEL-QN 781 (932)
Q Consensus 719 ~lr~~~~~~i-~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~-~~v~~--------------~~~p~~K~~~v~~l-~~ 781 (932)
.+.|++.+.| +.+++.|++++++|+-...-++.+++.+|+.. +++.| .+.-++|...++.. ..
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~~~~~~ 174 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLGHEKVAQLERKIGT 174 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccccCceEEEEEEEEEccEECCccCCChHHHHHHHHHhCC
Confidence 4589999999 67899999999999999999999999999510 12221 24568898877754 33
Q ss_pred CCCEEEEEcCCcccHHHHHhCCeeEEecCc
Q 002354 782 DENVVAMVGDGINDAAALASSHIGVAMGGG 811 (932)
Q Consensus 782 ~g~~v~~vGDg~ND~~al~~A~vgIa~~~~ 811 (932)
......+-||..||.|||+.|+..++++..
T Consensus 175 ~~~~~~aY~Ds~~D~pmL~~a~~~~~vnp~ 204 (211)
T PRK11590 175 PLRLYSGYSDSKQDNPLLYFCQHRWRVTPR 204 (211)
T ss_pred CcceEEEecCCcccHHHHHhCCCCEEECcc
Confidence 444556889999999999999999999643
No 104
>PRK06769 hypothetical protein; Validated
Probab=97.19 E-value=0.0012 Score=66.95 Aligned_cols=109 Identities=14% Similarity=0.147 Sum_probs=77.0
Q ss_pred CCeEEEEEECCEEEEEEEecc----cccHHHHHHHHHHHhCCCeEEEEcCCCHH--------HHHHHHHHcCCCCCcee-
Q 002354 698 NQSLVYVGVDNMLAGLIYVED----RIRDDAAHVVNSLSSQGIGVYMLSGDKKN--------SAEYVASLVGIPKDKVL- 764 (932)
Q Consensus 698 g~~~~~va~~~~~lG~i~l~D----~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~--------~a~~ia~~~gi~~~~v~- 764 (932)
+++.+++..|+++.|-..+.+ ++-|++++++++|++.|+++.++|..+.. ......+..|++ .++
T Consensus 3 ~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~--~~~~ 80 (173)
T PRK06769 3 NIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFD--DIYL 80 (173)
T ss_pred CCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcC--EEEE
Confidence 678889999999877633332 36899999999999999999999987631 234445677876 333
Q ss_pred cc---------cCh--hhHHHHHHHHhhCCCEEEEEcCCcccHHHHHhCCeeEEe
Q 002354 765 SG---------VKP--NEKKRFINELQNDENVVAMVGDGINDAAALASSHIGVAM 808 (932)
Q Consensus 765 ~~---------~~p--~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~vgIa~ 808 (932)
+. ..| +-=..+++.+....+.++||||..+|+.+-+.|++-...
T Consensus 81 ~~~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~ 135 (173)
T PRK06769 81 CPHKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNATTIL 135 (173)
T ss_pred CcCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeEEE
Confidence 11 122 222444444544456899999999999999999987443
No 105
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.15 E-value=0.0013 Score=70.02 Aligned_cols=83 Identities=22% Similarity=0.359 Sum_probs=63.8
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCC----HHHHHHHHHHcCCCCC----ceecccCh--hhHHHHHHHHhhCCCEEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDK----KNSAEYVASLVGIPKD----KVLSGVKP--NEKKRFINELQNDENVVAM 788 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~----~~~a~~ia~~~gi~~~----~v~~~~~p--~~K~~~v~~l~~~g~~v~~ 788 (932)
.+.+++++.++.|+++|+++.++|++. ..++..+.+.+|++.+ .++..-+. .+|.. .+++.+ .++|
T Consensus 114 ~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~~K~~K~~---~l~~~~-i~I~ 189 (237)
T PRK11009 114 IPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDKPGQYTKTQ---WLKKKN-IRIF 189 (237)
T ss_pred cchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCCCCCCCHHH---HHHhcC-CeEE
Confidence 467889999999999999999999974 6689999999999422 33333222 34554 344444 4899
Q ss_pred EcCCcccHHHHHhCCee
Q 002354 789 VGDGINDAAALASSHIG 805 (932)
Q Consensus 789 vGDg~ND~~al~~A~vg 805 (932)
+||..+|..+-+.|++-
T Consensus 190 IGDs~~Di~aA~~AGi~ 206 (237)
T PRK11009 190 YGDSDNDITAAREAGAR 206 (237)
T ss_pred EcCCHHHHHHHHHcCCc
Confidence 99999999999999885
No 106
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=97.15 E-value=0.003 Score=68.88 Aligned_cols=87 Identities=16% Similarity=0.134 Sum_probs=63.0
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC---Cceecc-c----Ch--hhHHHHHHHHhhC-CCEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK---DKVLSG-V----KP--NEKKRFINELQND-ENVVA 787 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~---~~v~~~-~----~p--~~K~~~v~~l~~~-g~~v~ 787 (932)
.+-|++.++++.|++.|+++.++|+.....+..+-+.+|+.. +.+++. - .| +-=....+.+.-. ...++
T Consensus 101 ~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~l 180 (267)
T PRK13478 101 TPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAACV 180 (267)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcceE
Confidence 467899999999999999999999999998888888776532 233322 1 12 1112333333322 35799
Q ss_pred EEcCCcccHHHHHhCCee
Q 002354 788 MVGDGINDAAALASSHIG 805 (932)
Q Consensus 788 ~vGDg~ND~~al~~A~vg 805 (932)
||||..+|+.+-+.|++-
T Consensus 181 ~IGDs~~Di~aA~~aG~~ 198 (267)
T PRK13478 181 KVDDTVPGIEEGLNAGMW 198 (267)
T ss_pred EEcCcHHHHHHHHHCCCE
Confidence 999999999999999973
No 107
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.12 E-value=0.0025 Score=68.76 Aligned_cols=87 Identities=17% Similarity=0.134 Sum_probs=65.1
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC---Cceecc-c----Ch--hhHHHHHHHHhhC-CCEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK---DKVLSG-V----KP--NEKKRFINELQND-ENVVA 787 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~---~~v~~~-~----~p--~~K~~~v~~l~~~-g~~v~ 787 (932)
++.|++.+.++.|+++|+++.++|+.....+..+.+.+|+.. +.+++. - .| +-=....+.+.-. .+.++
T Consensus 99 ~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~l 178 (253)
T TIGR01422 99 SPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAACV 178 (253)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchheE
Confidence 457899999999999999999999999999999999888753 223332 1 22 2223333334322 45699
Q ss_pred EEcCCcccHHHHHhCCee
Q 002354 788 MVGDGINDAAALASSHIG 805 (932)
Q Consensus 788 ~vGDg~ND~~al~~A~vg 805 (932)
||||..+|+.+-+.|++-
T Consensus 179 ~IGDs~~Di~aA~~aGi~ 196 (253)
T TIGR01422 179 KVGDTVPDIEEGRNAGMW 196 (253)
T ss_pred EECCcHHHHHHHHHCCCe
Confidence 999999999999999975
No 108
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.09 E-value=0.0015 Score=69.59 Aligned_cols=82 Identities=18% Similarity=0.294 Sum_probs=62.1
Q ss_pred ccHHHHHHHHHHHhCCCeEEEEcCC----CHHHHHHHHHHcCCCC--CceecccC-h---hhHHHHHHHHhhCCCEEEEE
Q 002354 720 IRDDAAHVVNSLSSQGIGVYMLSGD----KKNSAEYVASLVGIPK--DKVLSGVK-P---NEKKRFINELQNDENVVAMV 789 (932)
Q Consensus 720 lr~~~~~~i~~L~~~Gi~v~~~TGd----~~~~a~~ia~~~gi~~--~~v~~~~~-p---~~K~~~v~~l~~~g~~v~~v 789 (932)
+.+.+.+.++.|+++|+++.++|+. ...++..+.+.+|++. +.++..-. . .+|. ..+++.+ .++|+
T Consensus 115 p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~---~~l~~~~-i~i~v 190 (237)
T TIGR01672 115 PKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKT---QWIQDKN-IRIHY 190 (237)
T ss_pred chhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHH---HHHHhCC-CeEEE
Confidence 3445999999999999999999998 7779999999999974 23333221 0 1233 3445554 47999
Q ss_pred cCCcccHHHHHhCCee
Q 002354 790 GDGINDAAALASSHIG 805 (932)
Q Consensus 790 GDg~ND~~al~~A~vg 805 (932)
||..||..+-+.|++-
T Consensus 191 GDs~~DI~aAk~AGi~ 206 (237)
T TIGR01672 191 GDSDNDITAAKEAGAR 206 (237)
T ss_pred eCCHHHHHHHHHCCCC
Confidence 9999999999999875
No 109
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=97.08 E-value=0.0016 Score=67.39 Aligned_cols=86 Identities=17% Similarity=0.199 Sum_probs=65.0
Q ss_pred cccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Ccee------cccChhhHHHHHHHHhhCCCEEEE
Q 002354 717 EDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKVL------SGVKPNEKKRFINELQNDENVVAM 788 (932)
Q Consensus 717 ~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v~------~~~~p~~K~~~v~~l~~~g~~v~~ 788 (932)
.+++.+.+.++++.|++.|+++.++|+.+...+..+.+.+|+.. +.++ ..-.|+--...++.+.-....++|
T Consensus 104 ~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~ 183 (197)
T TIGR01548 104 EDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQIWMEDCPPKPNPEPLILAAKALGVEACHAAM 183 (197)
T ss_pred ccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEEeecCCCCCcCHHHHHHHHHHhCcCcccEEE
Confidence 34466677999999999999999999999999999999999862 1111 122344334555666555678999
Q ss_pred EcCCcccHHHHHhC
Q 002354 789 VGDGINDAAALASS 802 (932)
Q Consensus 789 vGDg~ND~~al~~A 802 (932)
|||+.+|+.+-+.|
T Consensus 184 vGD~~~Di~aA~~a 197 (197)
T TIGR01548 184 VGDTVDDIITGRKA 197 (197)
T ss_pred EeCCHHHHHHHHhC
Confidence 99999999887654
No 110
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=97.07 E-value=0.0019 Score=69.53 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=43.9
Q ss_pred hHHHHHHHHhhC----CCEEEEEcCCcccHHHHHhCCeeEEecCchHH-----HHhh---cC-EEEeCCChhHHHHHHH
Q 002354 771 EKKRFINELQND----ENVVAMVGDGINDAAALASSHIGVAMGGGVGA-----ASEV---AS-VVLMGNRLSQLLVALE 836 (932)
Q Consensus 771 ~K~~~v~~l~~~----g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~-----a~~~---ad-~vl~~~~~~~i~~~i~ 836 (932)
.|...++.|+++ ...|+++||+.||.+||..++-||.++|+.+. .... .. ++-..+.-.+|.+.++
T Consensus 165 ~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL~~~~~~vvV~Na~~e~~~~~~~~~~~~~~iy~a~~~~a~GIlegl~ 243 (247)
T PF05116_consen 165 SKGAALRYLMERWGIPPEQVLVAGDSGNDLEMLEGGDHGVVVGNAQPELLSWLLEKLRQQERIYFAQGPYAAGILEGLQ 243 (247)
T ss_dssp SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHHCCSSEEEE-TTS-HHHHHHHHHCC-TTE--EE-SS-THHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHHcCcCCEEEEcCCCHHHHHHHHHhcccCCceEecCCCCcHHHHHHHH
Confidence 466666655543 24588899999999999999999999998888 2222 22 3344566778887765
No 111
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.06 E-value=0.0037 Score=63.65 Aligned_cols=118 Identities=20% Similarity=0.332 Sum_probs=90.0
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC-------------------------------------
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD------------------------------------- 761 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~------------------------------------- 761 (932)
++-|++.++++.|++. ...+++|-.-.+-+.++|+.+|++..
T Consensus 83 ~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~Prg~~~~Te~~lD~~~~PeeeR~E~L~~~~~~~~~~geel 161 (315)
T COG4030 83 KLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGVPRGELHGTEVDLDSIAVPEEEREELLSIIDVIASLSGEEL 161 (315)
T ss_pred ccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhcCCCccccccccccCccccCChHHHHHHHHhcCccccccHHHH
Confidence 4578999999999876 55666666777888999999998531
Q ss_pred -----ceecccChhhHHHHHHHHhhC------------------CCEEEEEcCCcccHHHHHhCC-ee-EEec-CchHHH
Q 002354 762 -----KVLSGVKPNEKKRFINELQND------------------ENVVAMVGDGINDAAALASSH-IG-VAMG-GGVGAA 815 (932)
Q Consensus 762 -----~v~~~~~p~~K~~~v~~l~~~------------------g~~v~~vGDg~ND~~al~~A~-vg-Ia~~-~~~~~a 815 (932)
.+|.++.|.+-.+++...+.- ....++|||.+.|..||+.+. -| +|+. ||.+-+
T Consensus 162 fe~lDe~F~rLip~E~gki~~~vk~VGgg~ka~i~e~~~ele~~d~sa~~VGDSItDv~ml~~~rgrGglAvaFNGNeYa 241 (315)
T COG4030 162 FEKLDELFSRLIPSEVGKIVESVKAVGGGEKAKIMEGYCELEGIDFSAVVVGDSITDVKMLEAARGRGGLAVAFNGNEYA 241 (315)
T ss_pred HHHHHHHHhhcCHHHHHHHHHhhhhccCcchhHHHHHHHhhcCCCcceeEecCcccchHHHHHhhccCceEEEecCCccc
Confidence 456677776544444443322 234789999999999999873 33 6666 888899
Q ss_pred HhhcCEEEeCCChhHHHHHHHH
Q 002354 816 SEVASVVLMGNRLSQLLVALEL 837 (932)
Q Consensus 816 ~~~ad~vl~~~~~~~i~~~i~~ 837 (932)
...||+.+.+.+...+..+|++
T Consensus 242 l~eAdVAvisp~~~a~~pviel 263 (315)
T COG4030 242 LKEADVAVISPTAMAEAPVIEL 263 (315)
T ss_pred ccccceEEeccchhhhhHHHHH
Confidence 9999999999999999888886
No 112
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.02 E-value=0.0041 Score=67.48 Aligned_cols=111 Identities=19% Similarity=0.200 Sum_probs=78.6
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Cceecc-------cChhhHHHHHHHHhhCCCEEEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKVLSG-------VKPNEKKRFINELQNDENVVAMV 789 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v~~~-------~~p~~K~~~v~~l~~~g~~v~~v 789 (932)
++.|++.+.++.|+++|+++.++|+.+...+..+-+.+|+.. +.+++. -.|+-=...++.+.-....++||
T Consensus 109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l~I 188 (260)
T PLN03243 109 RLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCIVF 188 (260)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeEEE
Confidence 468999999999999999999999999999999999999853 223221 12222234444444455679999
Q ss_pred cCCcccHHHHHhCCeeE-Ee-cCchHHHHhhcCEEEeCCChhHH
Q 002354 790 GDGINDAAALASSHIGV-AM-GGGVGAASEVASVVLMGNRLSQL 831 (932)
Q Consensus 790 GDg~ND~~al~~A~vgI-a~-~~~~~~a~~~ad~vl~~~~~~~i 831 (932)
||..+|+.+-+.|++-. ++ |.........+|+++. ++..+
T Consensus 189 gDs~~Di~aA~~aG~~~i~v~g~~~~~~l~~ad~vi~--~~~el 230 (260)
T PLN03243 189 GNSNSSVEAAHDGCMKCVAVAGKHPVYELSAGDLVVR--RLDDL 230 (260)
T ss_pred cCCHHHHHHHHHcCCEEEEEecCCchhhhccCCEEeC--CHHHH
Confidence 99999999999999853 33 2222323345787764 45544
No 113
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=96.98 E-value=0.0039 Score=63.46 Aligned_cols=130 Identities=18% Similarity=0.203 Sum_probs=79.0
Q ss_pred eEEEEEECCEEEEEEEe-----cccccHHHHHHHHHHHhCCCeEEEEcCCCH---------------HHHHHHHHHcCCC
Q 002354 700 SLVYVGVDNMLAGLIYV-----EDRIRDDAAHVVNSLSSQGIGVYMLSGDKK---------------NSAEYVASLVGIP 759 (932)
Q Consensus 700 ~~~~va~~~~~lG~i~l-----~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~---------------~~a~~ia~~~gi~ 759 (932)
..+++..||+++---.. +-++.|++.++|++|+++|+++.++|.-+. .....+.++.|+.
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYVHEIDNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD 81 (176)
T ss_pred CEEEEeCCCCEeCCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 35677788887621010 113468999999999999999999997653 2223445556654
Q ss_pred CCceec-c---------------cChh--hHHHHHHHHhhCCCEEEEEcCCcccHHHHHhCCee--EEecCchH---HHH
Q 002354 760 KDKVLS-G---------------VKPN--EKKRFINELQNDENVVAMVGDGINDAAALASSHIG--VAMGGGVG---AAS 816 (932)
Q Consensus 760 ~~~v~~-~---------------~~p~--~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~vg--Ia~~~~~~---~a~ 816 (932)
.+.++. . ..|+ -=....+.+.-....++||||..+|+.+-+.|++. |.+..+.. ...
T Consensus 82 ~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~~~~~~~~ 161 (176)
T TIGR00213 82 LDGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKPITPEAE 161 (176)
T ss_pred ccEEEECCCCCcccccccCCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCCccccccc
Confidence 333321 1 1222 11223333333456799999999999999999985 34433321 122
Q ss_pred hhcCEEEeCCChhHH
Q 002354 817 EVASVVLMGNRLSQL 831 (932)
Q Consensus 817 ~~ad~vl~~~~~~~i 831 (932)
..+|+++. ++..+
T Consensus 162 ~~ad~~i~--~~~el 174 (176)
T TIGR00213 162 NIADWVLN--SLADL 174 (176)
T ss_pred ccCCEEec--cHHHh
Confidence 34888884 45444
No 114
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=96.97 E-value=0.005 Score=66.34 Aligned_cols=106 Identities=11% Similarity=0.204 Sum_probs=76.9
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Cce-eccc------ChhhHHHHHHHHhhCCCEEEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKV-LSGV------KPNEKKRFINELQNDENVVAMV 789 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v-~~~~------~p~~K~~~v~~l~~~g~~v~~v 789 (932)
++.|++.++++.|+++|+++.++|+-+...+..+.+.+|+.. +.+ .+.. .|+--....+.+.-....++||
T Consensus 108 ~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l~v 187 (248)
T PLN02770 108 KPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHTFVF 187 (248)
T ss_pred CcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHEEEE
Confidence 467899999999999999999999999999999999999863 222 2221 2222244455555456779999
Q ss_pred cCCcccHHHHHhCCeeEE-ecCc--hH-HHHhhcCEEEe
Q 002354 790 GDGINDAAALASSHIGVA-MGGG--VG-AASEVASVVLM 824 (932)
Q Consensus 790 GDg~ND~~al~~A~vgIa-~~~~--~~-~a~~~ad~vl~ 824 (932)
||..+|+.+-++|++-.. +..+ .+ .....+|+++.
T Consensus 188 gDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi~ 226 (248)
T PLN02770 188 EDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLIK 226 (248)
T ss_pred cCCHHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEec
Confidence 999999999999998633 3222 12 22346888875
No 115
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=96.94 E-value=0.0079 Score=61.45 Aligned_cols=116 Identities=22% Similarity=0.211 Sum_probs=73.4
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCH---------------HHHHHHHHHcCCCCCceec-c---------cC--hhh
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKK---------------NSAEYVASLVGIPKDKVLS-G---------VK--PNE 771 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~---------------~~a~~ia~~~gi~~~~v~~-~---------~~--p~~ 771 (932)
.+.|++.+++++|++.|+++.++|..+. .....+-+..|+..+.++. . .. |+-
T Consensus 29 ~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~f~~i~~~~~~~~~~~~~~KP~p~~ 108 (181)
T PRK08942 29 IPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGGRLDGIYYCPHHPEDGCDCRKPKPGM 108 (181)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcCCCCCHHH
Confidence 4578999999999999999999998752 2223344566764334332 1 12 222
Q ss_pred HHHHHHHHhhCCCEEEEEcCCcccHHHHHhCCeeE-EecCch--H-HHHhhc--CEEEeCCChhHHHHHHH
Q 002354 772 KKRFINELQNDENVVAMVGDGINDAAALASSHIGV-AMGGGV--G-AASEVA--SVVLMGNRLSQLLVALE 836 (932)
Q Consensus 772 K~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~vgI-a~~~~~--~-~a~~~a--d~vl~~~~~~~i~~~i~ 836 (932)
-....+.+.-..+.++||||..+|+.+-+.|++.. .+..+. . .....+ |+++ +++..+.+++.
T Consensus 109 ~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~~~ii--~~l~el~~~l~ 177 (181)
T PRK08942 109 LLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPGTWVL--DSLADLPQALK 177 (181)
T ss_pred HHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCCchhhhcccCCCceee--cCHHHHHHHHH
Confidence 23444445445678999999999999999999752 232322 1 112235 7776 46666665543
No 116
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=96.89 E-value=0.0084 Score=59.82 Aligned_cols=89 Identities=19% Similarity=0.289 Sum_probs=65.9
Q ss_pred cccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHH---HHHHH-----cCCCCCceec--------------ccChhh-HH
Q 002354 717 EDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAE---YVASL-----VGIPKDKVLS--------------GVKPNE-KK 773 (932)
Q Consensus 717 ~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~---~ia~~-----~gi~~~~v~~--------------~~~p~~-K~ 773 (932)
+|.+.+++.+++++++++|++++++||++...+. ...++ .+++...++. .-.|+. |.
T Consensus 25 ~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~~~~e~i~~~~~~~K~ 104 (157)
T smart00775 25 KDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAALHREVISKKPEVFKI 104 (157)
T ss_pred cCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhhhhcccccCCHHHHHH
Confidence 3788999999999999999999999999999884 55556 2354211111 123433 77
Q ss_pred HHHHHHhh-----CCCEEEEEcCCcccHHHHHhCCee
Q 002354 774 RFINELQN-----DENVVAMVGDGINDAAALASSHIG 805 (932)
Q Consensus 774 ~~v~~l~~-----~g~~v~~vGDg~ND~~al~~A~vg 805 (932)
+.++.+++ ....++.+||+.+|+.+-+++++-
T Consensus 105 ~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~ 141 (157)
T smart00775 105 ACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIP 141 (157)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCC
Confidence 78887776 345677799999999999988763
No 117
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=96.85 E-value=0.0057 Score=61.91 Aligned_cols=106 Identities=22% Similarity=0.229 Sum_probs=77.2
Q ss_pred hCCCeEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCC-HHHHHHHHHHcCCCCCceecccChhhH--
Q 002354 696 LMNQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDK-KNSAEYVASLVGIPKDKVLSGVKPNEK-- 772 (932)
Q Consensus 696 ~~g~~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~-~~~a~~ia~~~gi~~~~v~~~~~p~~K-- 772 (932)
..+.+.+.+..|+++.-. =...+-+++.++++.|++.|++++++|+.+ ...+..+.+.+|+. .......|...
T Consensus 22 ~~~v~~vv~D~Dgtl~~~--~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~--~~~~~~KP~p~~~ 97 (170)
T TIGR01668 22 KVGIKGVVLDKDNTLVYP--DHNEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIP--VLPHAVKPPGCAF 97 (170)
T ss_pred HCCCCEEEEecCCccccC--CCCCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCE--EEcCCCCCChHHH
Confidence 457778888888776521 133678999999999999999999999988 67788888999985 22222344322
Q ss_pred HHHHHHHhhCCCEEEEEcCCc-ccHHHHHhCCee
Q 002354 773 KRFINELQNDENVVAMVGDGI-NDAAALASSHIG 805 (932)
Q Consensus 773 ~~~v~~l~~~g~~v~~vGDg~-ND~~al~~A~vg 805 (932)
..+.+.+.-....++||||.. .|..+-+.|++-
T Consensus 98 ~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~ 131 (170)
T TIGR01668 98 RRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSY 131 (170)
T ss_pred HHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCe
Confidence 223333333456799999998 799999999985
No 118
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.84 E-value=0.0033 Score=69.70 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=71.9
Q ss_pred ecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC---Cceec--------------ccChhhHHHHHHH
Q 002354 716 VEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK---DKVLS--------------GVKPNEKKRFINE 778 (932)
Q Consensus 716 l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~---~~v~~--------------~~~p~~K~~~v~~ 778 (932)
..+++.+++.++++.|++.|++++++||++...+..+.+.+|+.. +.+.+ +-.|+-+...++.
T Consensus 184 ~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~ 263 (300)
T PHA02530 184 KEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWE 263 (300)
T ss_pred ccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHH
Confidence 578899999999999999999999999999999999999988863 11111 2233445556655
Q ss_pred Hhh-CCCEEEEEcCCcccHHHHHhCCeeE
Q 002354 779 LQN-DENVVAMVGDGINDAAALASSHIGV 806 (932)
Q Consensus 779 l~~-~g~~v~~vGDg~ND~~al~~A~vgI 806 (932)
+-. ....++||||..+|+.+-+.|++-.
T Consensus 264 ~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~ 292 (300)
T PHA02530 264 KIAPKYDVLLAVDDRDQVVDMWRRIGLEC 292 (300)
T ss_pred HhccCceEEEEEcCcHHHHHHHHHhCCeE
Confidence 433 3478999999999999999999874
No 119
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.0033 Score=62.17 Aligned_cols=89 Identities=18% Similarity=0.155 Sum_probs=71.4
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcC----CCCCceecc------------------cChhhHHHHH
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVG----IPKDKVLSG------------------VKPNEKKRFI 776 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~g----i~~~~v~~~------------------~~p~~K~~~v 776 (932)
.++|+-++.++.+++++++++++|+....-...+-++++ |...+++++ .--.+|...|
T Consensus 73 ~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~~vI 152 (220)
T COG4359 73 KIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKSSVI 152 (220)
T ss_pred ccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCcchhH
Confidence 579999999999999999999999998888888888877 321111111 1225799999
Q ss_pred HHHhhCCCEEEEEcCCcccHHHHHhCCeeEE
Q 002354 777 NELQNDENVVAMVGDGINDAAALASSHIGVA 807 (932)
Q Consensus 777 ~~l~~~g~~v~~vGDg~ND~~al~~A~vgIa 807 (932)
+.|++..+.+.|+|||+.|.+|-+.+|+=.|
T Consensus 153 ~~l~e~~e~~fy~GDsvsDlsaaklsDllFA 183 (220)
T COG4359 153 HELSEPNESIFYCGDSVSDLSAAKLSDLLFA 183 (220)
T ss_pred HHhhcCCceEEEecCCcccccHhhhhhhHhh
Confidence 9999999999999999999988887776544
No 120
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.0034 Score=53.97 Aligned_cols=56 Identities=29% Similarity=0.385 Sum_probs=47.2
Q ss_pred EEecCCCChhhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeCCCccccchhhhhhHHHHHHHHHhcC
Q 002354 130 LDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAKVIPNWQRQLGEALAKHLTSCG 196 (932)
Q Consensus 130 l~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~~~~~~~~~~~~~~~~~i~~~i~~~G 196 (932)
...-.|+|.+|+..|++.+..++||.+++++...++++|.-+ .++ ..+.+.+++.|
T Consensus 8 v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~---~~p--------~~vl~~l~k~~ 63 (73)
T KOG1603|consen 8 VLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGN---VDP--------VKLLKKLKKTG 63 (73)
T ss_pred EEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEe---cCH--------HHHHHHHHhcC
Confidence 344589999999999999999999999999999999999865 333 66777777655
No 121
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=96.69 E-value=0.0081 Score=70.84 Aligned_cols=118 Identities=15% Similarity=0.218 Sum_probs=82.3
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Cceecc--cChhhHHHHHHH-Hhh-CCCEEEEEcCC
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKVLSG--VKPNEKKRFINE-LQN-DENVVAMVGDG 792 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v~~~--~~p~~K~~~v~~-l~~-~g~~v~~vGDg 792 (932)
++.|++.+.++.|++.|+++.++|+.....+..+.+.+|+.. +.+++. ..+..|.+++.. +++ ....++||||.
T Consensus 330 ~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~l~~~~~v~VGDs 409 (459)
T PRK06698 330 ALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIEQINSLNKSDLVKSILNKYDIKEAAVVGDR 409 (459)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEecCCCCCCCCcHHHHHHHHhcCcceEEEEeCC
Confidence 578999999999999999999999999999999999999853 122221 111112223322 221 24679999999
Q ss_pred cccHHHHHhCCee-EEecC--chHHHHhhcCEEEeCCChhHHHHHHHHH
Q 002354 793 INDAAALASSHIG-VAMGG--GVGAASEVASVVLMGNRLSQLLVALELS 838 (932)
Q Consensus 793 ~ND~~al~~A~vg-Ia~~~--~~~~a~~~ad~vl~~~~~~~i~~~i~~g 838 (932)
.+|+.+-+.|++- |++.. ..+.....+|+++ +++..+..++...
T Consensus 410 ~~Di~aAk~AG~~~I~v~~~~~~~~~~~~~d~~i--~~l~el~~~l~~~ 456 (459)
T PRK06698 410 LSDINAAKDNGLIAIGCNFDFAQEDELAQADIVI--DDLLELKGILSTV 456 (459)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCcccccCCCCEEe--CCHHHHHHHHHHH
Confidence 9999999999984 44432 2222234588887 4777777665443
No 122
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=96.68 E-value=0.0046 Score=66.47 Aligned_cols=54 Identities=13% Similarity=0.219 Sum_probs=38.7
Q ss_pred CeEEEEEECCEEEEEEE--ecccccHHHHHHHHHHHhC-CCeEEEEcCCCHHHHHHH
Q 002354 699 QSLVYVGVDNMLAGLIY--VEDRIRDDAAHVVNSLSSQ-GIGVYMLSGDKKNSAEYV 752 (932)
Q Consensus 699 ~~~~~va~~~~~lG~i~--l~D~lr~~~~~~i~~L~~~-Gi~v~~~TGd~~~~a~~i 752 (932)
.+.+++.+||+++-+.. -...+.++..+++++|.+. +..|+++||++.......
T Consensus 3 ~~~l~lD~DGTL~~~~~~p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~~~~~~~~ 59 (244)
T TIGR00685 3 KRAFFFDYDGTLSEIVPDPDAAVVSDRLLTILQKLAARPHNAIWIISGRKFLEKWLG 59 (244)
T ss_pred cEEEEEecCccccCCcCCCcccCCCHHHHHHHHHHHhCCCCeEEEEECCChhhcccc
Confidence 46778889999886321 1223568999999999776 456889999987665443
No 123
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=96.67 E-value=0.0081 Score=60.82 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=70.7
Q ss_pred EEEEecccccHHHHHHHHHHHhCCCeEEEEcCC-CHHHHHHHHHHcCCC---------C--CceecccCh-hhH--HHHH
Q 002354 712 GLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGD-KKNSAEYVASLVGIP---------K--DKVLSGVKP-NEK--KRFI 776 (932)
Q Consensus 712 G~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd-~~~~a~~ia~~~gi~---------~--~~v~~~~~p-~~K--~~~v 776 (932)
....-+-++.|++.++++.|+++|+++.++|+. ....+..+.+.+|+. . +.+.+.-.+ ..| ..+.
T Consensus 38 ~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~ 117 (174)
T TIGR01685 38 DKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMIL 117 (174)
T ss_pred eCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHH
Confidence 333444567899999999999999999999976 888999999999985 2 233322222 222 2344
Q ss_pred HHHhhC------CCEEEEEcCCcccHHHHHhCCeeEEe
Q 002354 777 NELQND------ENVVAMVGDGINDAAALASSHIGVAM 808 (932)
Q Consensus 777 ~~l~~~------g~~v~~vGDg~ND~~al~~A~vgIa~ 808 (932)
+.+.+. ...++||||...|+.+-++|++-...
T Consensus 118 ~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~ 155 (174)
T TIGR01685 118 QKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCY 155 (174)
T ss_pred HHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEE
Confidence 544432 36799999999999999999987654
No 124
>PRK11587 putative phosphatase; Provisional
Probab=96.67 E-value=0.011 Score=62.16 Aligned_cols=106 Identities=15% Similarity=0.110 Sum_probs=73.3
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC-ceecc-----cCh--hhHHHHHHHHhhCCCEEEEEc
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD-KVLSG-----VKP--NEKKRFINELQNDENVVAMVG 790 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~-~v~~~-----~~p--~~K~~~v~~l~~~g~~v~~vG 790 (932)
++.|++.+.++.|+++|+++.++|+.+...+...-+..|+... .+.+. ..| +-=....+.+.-....++|||
T Consensus 83 ~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l~ig 162 (218)
T PRK11587 83 TALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVVVE 162 (218)
T ss_pred eeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCCCccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEEEEe
Confidence 5689999999999999999999999887777777777887421 22221 122 212233334444457899999
Q ss_pred CCcccHHHHHhCCee-EEecCch-HHHHhhcCEEEe
Q 002354 791 DGINDAAALASSHIG-VAMGGGV-GAASEVASVVLM 824 (932)
Q Consensus 791 Dg~ND~~al~~A~vg-Ia~~~~~-~~a~~~ad~vl~ 824 (932)
|..+|+.+-+.|++- |++..+. ......+|+++.
T Consensus 163 Ds~~di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~ 198 (218)
T PRK11587 163 DAPAGVLSGLAAGCHVIAVNAPADTPRLDEVDLVLH 198 (218)
T ss_pred cchhhhHHHHHCCCEEEEECCCCchhhhccCCEEec
Confidence 999999999999985 5664332 222345777764
No 125
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=96.67 E-value=0.012 Score=57.73 Aligned_cols=108 Identities=21% Similarity=0.277 Sum_probs=84.9
Q ss_pred HHhCCCeEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecccChhhH-
Q 002354 694 EDLMNQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGVKPNEK- 772 (932)
Q Consensus 694 ~~~~g~~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K- 772 (932)
....|.+.+.+..|++++.. =..+..|+.++=++.++++|+++.++|-.++..+..+++.+|++ -++-...|-.+
T Consensus 23 L~~~Gikgvi~DlDNTLv~w--d~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~--fi~~A~KP~~~~ 98 (175)
T COG2179 23 LKAHGIKGVILDLDNTLVPW--DNPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVP--FIYRAKKPFGRA 98 (175)
T ss_pred HHHcCCcEEEEeccCceecc--cCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCc--eeecccCccHHH
Confidence 44578889999999999875 34577899999999999999999999999999999999999997 56555666554
Q ss_pred -HHHHHHHhhCCCEEEEEcCC-cccHHHHHhCCee
Q 002354 773 -KRFINELQNDENVVAMVGDG-INDAAALASSHIG 805 (932)
Q Consensus 773 -~~~v~~l~~~g~~v~~vGDg-~ND~~al~~A~vg 805 (932)
.+.+++++-..+.|+||||. ..|+-+=..+++-
T Consensus 99 fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~ 133 (175)
T COG2179 99 FRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMR 133 (175)
T ss_pred HHHHHHHcCCChhHEEEEcchhhhhhhcccccCcE
Confidence 23444444456789999998 5777666666554
No 126
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=96.57 E-value=0.0083 Score=62.07 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=66.7
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Cceec-c----cChhhH--HHHHHHHhhCCCEEEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKVLS-G----VKPNEK--KRFINELQNDENVVAMV 789 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v~~-~----~~p~~K--~~~v~~l~~~g~~v~~v 789 (932)
++.|++.+++++|+++|+++.++|+-+......+.+.+|+.. +.+++ . ..|+-. ..+.+.+.-....++||
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~v 171 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLFV 171 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEEE
Confidence 467999999999999999999999999999999999999842 22332 1 233211 33344444455789999
Q ss_pred cCCcccHHHHHhCCeeE
Q 002354 790 GDGINDAAALASSHIGV 806 (932)
Q Consensus 790 GDg~ND~~al~~A~vgI 806 (932)
||+.+|+.+-+.+++-.
T Consensus 172 gD~~~Di~~A~~~G~~~ 188 (198)
T TIGR01428 172 ASNPWDLGGAKKFGFKT 188 (198)
T ss_pred eCCHHHHHHHHHCCCcE
Confidence 99999999999998753
No 127
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=96.51 E-value=0.0097 Score=62.59 Aligned_cols=91 Identities=16% Similarity=0.208 Sum_probs=67.1
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Cceecc-----cChhh--HHHHHHHHhhCCCEEEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKVLSG-----VKPNE--KKRFINELQNDENVVAMV 789 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v~~~-----~~p~~--K~~~v~~l~~~g~~v~~v 789 (932)
++.|++.++++.|+++|++++++|+-+...+....+.+|+.. +.+++. ..|.. =....+.+.-....++||
T Consensus 94 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~i 173 (221)
T TIGR02253 94 RVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAVMV 173 (221)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEEEE
Confidence 578999999999999999999999998888888899999852 123221 22321 123333343344679999
Q ss_pred cCCc-ccHHHHHhCCee-EEec
Q 002354 790 GDGI-NDAAALASSHIG-VAMG 809 (932)
Q Consensus 790 GDg~-ND~~al~~A~vg-Ia~~ 809 (932)
||.. +|+.+-+.|++- |.+.
T Consensus 174 gDs~~~di~~A~~aG~~~i~~~ 195 (221)
T TIGR02253 174 GDRLDKDIKGAKNLGMKTVWIN 195 (221)
T ss_pred CCChHHHHHHHHHCCCEEEEEC
Confidence 9998 999999999984 4454
No 128
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=96.48 E-value=0.0067 Score=60.57 Aligned_cols=89 Identities=21% Similarity=0.338 Sum_probs=69.9
Q ss_pred cccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC--CCceecc-----cCh--hhHHHHHHHHhhCCCEEE
Q 002354 717 EDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIP--KDKVLSG-----VKP--NEKKRFINELQNDENVVA 787 (932)
Q Consensus 717 ~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~--~~~v~~~-----~~p--~~K~~~v~~l~~~g~~v~ 787 (932)
..++.+++.+.++.|++.|++++++|+.+........+++|+. .+.+++. ..| +-=..+++.+.-....++
T Consensus 75 ~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~ 154 (176)
T PF13419_consen 75 KLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEIL 154 (176)
T ss_dssp GEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEE
T ss_pred ccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEE
Confidence 4467899999999999999999999999999999999999986 3344322 122 222445555555667899
Q ss_pred EEcCCcccHHHHHhCCee
Q 002354 788 MVGDGINDAAALASSHIG 805 (932)
Q Consensus 788 ~vGDg~ND~~al~~A~vg 805 (932)
+|||..+|+.+-+.|++-
T Consensus 155 ~vgD~~~d~~~A~~~G~~ 172 (176)
T PF13419_consen 155 FVGDSPSDVEAAKEAGIK 172 (176)
T ss_dssp EEESSHHHHHHHHHTTSE
T ss_pred EEeCCHHHHHHHHHcCCe
Confidence 999999999999999875
No 129
>PLN03017 trehalose-phosphatase
Probab=96.47 E-value=0.033 Score=62.66 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=48.1
Q ss_pred HhCCCeEEEEEECCEEEEEEEecc--cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHH
Q 002354 695 DLMNQSLVYVGVDNMLAGLIYVED--RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVAS 754 (932)
Q Consensus 695 ~~~g~~~~~va~~~~~lG~i~l~D--~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~ 754 (932)
......++++.+||+|+-+..-.| .+.++..++|++|. .|+.++++||+.......+..
T Consensus 107 ~~~k~~llflD~DGTL~Piv~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~~ 167 (366)
T PLN03017 107 SRGKQIVMFLDYDGTLSPIVDDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNFVK 167 (366)
T ss_pred hcCCCeEEEEecCCcCcCCcCCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHhhc
Confidence 344567788889999997765434 48899999999999 789999999999999887743
No 130
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=96.45 E-value=0.021 Score=64.70 Aligned_cols=111 Identities=19% Similarity=0.211 Sum_probs=79.5
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Cceecc-----cCh--hhHHHHHHHHhhCCCEEEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKVLSG-----VKP--NEKKRFINELQNDENVVAMV 789 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v~~~-----~~p--~~K~~~v~~l~~~g~~v~~v 789 (932)
.+.|++.+.++.|+++|+++.++|+.+...+..+-+.+||.. +.+++. -.| +-=...++.+.-....++||
T Consensus 216 ~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl~I 295 (381)
T PLN02575 216 RLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCIVF 295 (381)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEEEE
Confidence 367999999999999999999999999999999999999853 223221 122 22234455555556789999
Q ss_pred cCCcccHHHHHhCCeeE-EecCchHHH-HhhcCEEEeCCChhHH
Q 002354 790 GDGINDAAALASSHIGV-AMGGGVGAA-SEVASVVLMGNRLSQL 831 (932)
Q Consensus 790 GDg~ND~~al~~A~vgI-a~~~~~~~a-~~~ad~vl~~~~~~~i 831 (932)
||..+|+.|-+.|++-. ++.++.+.. ...+|+++ +++..+
T Consensus 296 GDS~~DIeAAk~AGm~~IgV~~~~~~~~l~~Ad~iI--~s~~EL 337 (381)
T PLN02575 296 GNSNQTVEAAHDARMKCVAVASKHPIYELGAADLVV--RRLDEL 337 (381)
T ss_pred cCCHHHHHHHHHcCCEEEEECCCCChhHhcCCCEEE--CCHHHH
Confidence 99999999999999863 333332222 23478776 355554
No 131
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=96.42 E-value=0.009 Score=58.86 Aligned_cols=87 Identities=18% Similarity=0.282 Sum_probs=61.6
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCH---------------HHHHHHHHHcCCCCCc-eecc---------cChhhH-
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKK---------------NSAEYVASLVGIPKDK-VLSG---------VKPNEK- 772 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~---------------~~a~~ia~~~gi~~~~-v~~~---------~~p~~K- 772 (932)
++.|++.++++.|++.|+++.++|..+. ..+..+.+.+|+.... ++.. ..|+-+
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~~ 106 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGL 106 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHHH
Confidence 4689999999999999999999998662 4566778889986321 2221 123211
Q ss_pred -HHHHHHHhhCCCEEEEEcCCcccHHHHHhCCee
Q 002354 773 -KRFINELQNDENVVAMVGDGINDAAALASSHIG 805 (932)
Q Consensus 773 -~~~v~~l~~~g~~v~~vGDg~ND~~al~~A~vg 805 (932)
..+++.+.-..+.++||||...|+.+-+.+++-
T Consensus 107 ~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~ 140 (147)
T TIGR01656 107 ILEALKRLGVDASRSLVVGDRLRDLQAARNAGLA 140 (147)
T ss_pred HHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCC
Confidence 223333333456799999999999999998875
No 132
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=96.41 E-value=0.0098 Score=63.03 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=67.6
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Cceec-c----cChh--hHHHHHHHHhhCCCEEEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKVLS-G----VKPN--EKKRFINELQNDENVVAMV 789 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v~~-~----~~p~--~K~~~v~~l~~~g~~v~~v 789 (932)
.+.|++.+.++.|+++|+++.++|..+...+...-+.+|+.. +.+++ . -.|+ -=....+.+.-....++||
T Consensus 93 ~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~i 172 (224)
T PRK14988 93 VLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTLFI 172 (224)
T ss_pred CcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEEEE
Confidence 568999999999999999999999988888888888899852 22322 2 1221 1122233333345679999
Q ss_pred cCCcccHHHHHhCCee--EEecCc
Q 002354 790 GDGINDAAALASSHIG--VAMGGG 811 (932)
Q Consensus 790 GDg~ND~~al~~A~vg--Ia~~~~ 811 (932)
||..+|+.+-+.|++. +++.++
T Consensus 173 gDs~~di~aA~~aG~~~~~~v~~~ 196 (224)
T PRK14988 173 DDSEPILDAAAQFGIRYCLGVTNP 196 (224)
T ss_pred cCCHHHHHHHHHcCCeEEEEEeCC
Confidence 9999999999999996 445443
No 133
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=96.36 E-value=0.016 Score=58.29 Aligned_cols=107 Identities=11% Similarity=0.116 Sum_probs=70.1
Q ss_pred CeEEEEEECCEEEEEEE------eccc---ccHHHHHHHHHHHhCCCeEEEEcCCCHH------------HHHHHHHHcC
Q 002354 699 QSLVYVGVDNMLAGLIY------VEDR---IRDDAAHVVNSLSSQGIGVYMLSGDKKN------------SAEYVASLVG 757 (932)
Q Consensus 699 ~~~~~va~~~~~lG~i~------l~D~---lr~~~~~~i~~L~~~Gi~v~~~TGd~~~------------~a~~ia~~~g 757 (932)
.+.+++..|++++-... -.++ +-|++.+++++|+++|+++.++|..+.. .+..+.+.+|
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~g 92 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLK 92 (166)
T ss_pred CcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcC
Confidence 35677788998874321 1122 3489999999999999999999965542 4567889999
Q ss_pred CCCCceeccc-----Chh--hHHHHHHHHh--hCCCEEEEEcCCc--------ccHHHHHhCCee
Q 002354 758 IPKDKVLSGV-----KPN--EKKRFINELQ--NDENVVAMVGDGI--------NDAAALASSHIG 805 (932)
Q Consensus 758 i~~~~v~~~~-----~p~--~K~~~v~~l~--~~g~~v~~vGDg~--------ND~~al~~A~vg 805 (932)
+....+.+.- .|. -=..+.+.+. -....++||||.. +|+.+-+.|++-
T Consensus 93 l~~~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~ 157 (166)
T TIGR01664 93 VPIQVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLE 157 (166)
T ss_pred CCEEEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCC
Confidence 8642232211 221 1122333333 2336799999986 699998888764
No 134
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=96.30 E-value=0.016 Score=63.79 Aligned_cols=106 Identities=14% Similarity=0.145 Sum_probs=71.5
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCC---CCC-cee-cc----cCh--hhHHHHHHHHhhCCCEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGI---PKD-KVL-SG----VKP--NEKKRFINELQNDENVVA 787 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi---~~~-~v~-~~----~~p--~~K~~~v~~l~~~g~~v~ 787 (932)
++.|++.+.++.|++.|+++.++|+-+......+-+..+. ... .++ +. -.| +-=..+.+.+.-....++
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l 223 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSRCV 223 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHHEE
Confidence 5789999999999999999999999988888777666532 110 122 11 122 112334444444556799
Q ss_pred EEcCCcccHHHHHhCCeeEEec-Cc--hHHHHhhcCEEEe
Q 002354 788 MVGDGINDAAALASSHIGVAMG-GG--VGAASEVASVVLM 824 (932)
Q Consensus 788 ~vGDg~ND~~al~~A~vgIa~~-~~--~~~a~~~ad~vl~ 824 (932)
||||+.+|+.+-+.|++....- .+ .......+|+++.
T Consensus 224 ~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l~~ad~vi~ 263 (286)
T PLN02779 224 VVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSGADAVFD 263 (286)
T ss_pred EEeCCHHhHHHHHHcCCEEEEEccCCccccccCCCcEEEC
Confidence 9999999999999999875442 22 2222245888874
No 135
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=96.29 E-value=0.017 Score=60.70 Aligned_cols=113 Identities=13% Similarity=0.244 Sum_probs=77.1
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Cceecc-c----ChhhH--HHHHHHH-hhCCCEEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKVLSG-V----KPNEK--KRFINEL-QNDENVVAM 788 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v~~~-~----~p~~K--~~~v~~l-~~~g~~v~~ 788 (932)
++.|++.+.+++|++. ++++++|+-....+..+.+.+|+.. +.+++. . .|+.. ...++.+ .-....++|
T Consensus 97 ~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~ 175 (224)
T TIGR02254 97 QLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVLM 175 (224)
T ss_pred eeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheEE
Confidence 5689999999999999 9999999999999999999999852 234332 1 23221 3334444 334467999
Q ss_pred EcCCc-ccHHHHHhCCee-EEec--CchHHHHhhcCEEEeCCChhHHHHH
Q 002354 789 VGDGI-NDAAALASSHIG-VAMG--GGVGAASEVASVVLMGNRLSQLLVA 834 (932)
Q Consensus 789 vGDg~-ND~~al~~A~vg-Ia~~--~~~~~a~~~ad~vl~~~~~~~i~~~ 834 (932)
|||.. +|+.+-+.+++- |.+. ...+.....++.++ +++..+..+
T Consensus 176 igD~~~~di~~A~~~G~~~i~~~~~~~~~~~~~~~~~~~--~~~~el~~~ 223 (224)
T TIGR02254 176 IGDSLTADIKGGQNAGLDTCWMNPDMHPNPDDIIPTYEI--RSLEELYEI 223 (224)
T ss_pred ECCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCceEE--CCHHHHHhh
Confidence 99998 899999999973 3432 22222223466666 456666543
No 136
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=96.22 E-value=0.0079 Score=61.27 Aligned_cols=85 Identities=15% Similarity=0.166 Sum_probs=59.8
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Cceec-----ccCh--hhHHHHHHHHhhCCCEEEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKVLS-----GVKP--NEKKRFINELQNDENVVAMV 789 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v~~-----~~~p--~~K~~~v~~l~~~g~~v~~v 789 (932)
++.|++.++++.|+++|+++.++|+... +..+.+.+|+.. +.++. .-.| +-=....+.+.-....++||
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~v 164 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIGI 164 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEEE
Confidence 5789999999999999999999997533 456788899852 22221 1122 21123333333334579999
Q ss_pred cCCcccHHHHHhCCee
Q 002354 790 GDGINDAAALASSHIG 805 (932)
Q Consensus 790 GDg~ND~~al~~A~vg 805 (932)
||..+|+.+-+.|++-
T Consensus 165 gD~~~di~aA~~aG~~ 180 (185)
T TIGR01990 165 EDAQAGIEAIKAAGMF 180 (185)
T ss_pred ecCHHHHHHHHHcCCE
Confidence 9999999999999885
No 137
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.16 E-value=0.019 Score=62.09 Aligned_cols=84 Identities=18% Similarity=0.281 Sum_probs=63.1
Q ss_pred ccccHHHHHHHHHHHhCCCeEEEEcCCCHH---HHHHHHHHcCCCC---CceecccChhhHHHHHHHHhhCCCEEEEEcC
Q 002354 718 DRIRDDAAHVVNSLSSQGIGVYMLSGDKKN---SAEYVASLVGIPK---DKVLSGVKPNEKKRFINELQNDENVVAMVGD 791 (932)
Q Consensus 718 D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~---~a~~ia~~~gi~~---~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGD 791 (932)
.++-|++.+.++.|++.|+++.++|++... ......+..|++. +.++.+-....|....+.+.+.-..+++|||
T Consensus 117 a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~~~K~~rr~~I~~~y~Ivl~vGD 196 (266)
T TIGR01533 117 AKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKDKSSKESRRQKVQKDYEIVLLFGD 196 (266)
T ss_pred CCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCCCCCcHHHHHHHHhcCCEEEEECC
Confidence 456799999999999999999999998744 3446667899963 3555554334576667777665567999999
Q ss_pred CcccHHHHHh
Q 002354 792 GINDAAALAS 801 (932)
Q Consensus 792 g~ND~~al~~ 801 (932)
..+|......
T Consensus 197 ~~~Df~~~~~ 206 (266)
T TIGR01533 197 NLLDFDDFFY 206 (266)
T ss_pred CHHHhhhhhc
Confidence 9999865433
No 138
>KOG4383 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.065 Score=62.41 Aligned_cols=148 Identities=15% Similarity=0.269 Sum_probs=116.4
Q ss_pred EEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC---------------------------
Q 002354 709 MLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD--------------------------- 761 (932)
Q Consensus 709 ~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~--------------------------- 761 (932)
.|.|++.+..+.+++....|+.|-++-|+.+-.|-.++...+-+|+++||...
T Consensus 816 If~GlVs~~Yea~ldiVriIdgL~naCiRfVYFS~EdELkSkVFAEKlGiEaGWNCHISLa~~~d~Pg~e~~pa~~q~a~ 895 (1354)
T KOG4383|consen 816 IFCGLVSLHYEAILDIVRIIDGLDNACIRFVYFSKEDELKSKVFAEKLGIEAGWNCHISLAEEEDAPGREAGPAHEQFAA 895 (1354)
T ss_pred hhhhhhhhhccchhhHHHHHHHhhhhheeeeeecchHHHHHHHHHHHhccccccceeEEeccCCCCCcccCCCCChhhhc
Confidence 58999999999999999999999999999999999999999999999998210
Q ss_pred --------------------------------------------------------------------------ceeccc
Q 002354 762 --------------------------------------------------------------------------KVLSGV 767 (932)
Q Consensus 762 --------------------------------------------------------------------------~v~~~~ 767 (932)
-.|...
T Consensus 896 qkpSlhddlnqia~ddaeg~lL~~Eeg~~dliSfq~~dsdi~kf~ed~N~AkLPrGihnVRPHL~~iDNVPLLV~LFTDc 975 (1354)
T KOG4383|consen 896 QKPSLHDDLNQIALDDAEGELLDCEEGARDLISFQKMDSDIAKFAEDPNIAKLPRGIHNVRPHLDEIDNVPLLVGLFTDC 975 (1354)
T ss_pred cCcchhHHHHHhhhcccccceeehhhcccCCccccccccchhhhcCCCchhhcCcchhhcCcccccccCcceeeeeccCC
Confidence 256778
Q ss_pred ChhhHHHHHHHHhhCCCEEEEEcCCcccHH--HHHhCCeeEEecC-------------chHH--HHh-------------
Q 002354 768 KPNEKKRFINELQNDENVVAMVGDGINDAA--ALASSHIGVAMGG-------------GVGA--ASE------------- 817 (932)
Q Consensus 768 ~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~--al~~A~vgIa~~~-------------~~~~--a~~------------- 817 (932)
+|+...+.|+.+|+.|++++.+|.-.|-.. .+-+||++|++-. ++.. |+.
T Consensus 976 npeamcEMIeIMQE~GEVtcclGS~aN~rNSciflkadISialD~l~~~~C~~e~fg~assismaqandglsplQiSgqL 1055 (1354)
T KOG4383|consen 976 NPEAMCEMIEIMQENGEVTCCLGSCANARNSCIFLKADISIALDDLEEPACRLEDFGVASSISMAQANDGLSPLQISGQL 1055 (1354)
T ss_pred CHHHHHHHHHHHHHcCcEEEEeccccccccceEEEccceeEEeccCCCccceecccccchhhhhhhhcCCCCceeecccc
Confidence 999999999999999999999999877544 3468899998732 1111 111
Q ss_pred ---hcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002354 818 ---VASVVLMGNRLSQLLVALELSRLTMKTVKQNLWWAFGYN 856 (932)
Q Consensus 818 ---~ad~vl~~~~~~~i~~~i~~gR~~~~~i~~nl~~a~~~N 856 (932)
+.|+-+....+-.+..+|+-+|..+.-+|+.+.|.+-..
T Consensus 1056 naL~c~~~f~~ee~ikiirLIe~ARHa~~g~R~cfLFiLq~q 1097 (1354)
T KOG4383|consen 1056 NALACDFRFDHEELIKIIRLIECARHAMSGFRHCFLFILQAQ 1097 (1354)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 123333333455678888889999999999888866443
No 139
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=96.04 E-value=0.011 Score=60.36 Aligned_cols=86 Identities=16% Similarity=0.231 Sum_probs=62.1
Q ss_pred ccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Cceecc-----cChhhH--HHHHHHHhhCCCEEEE
Q 002354 718 DRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKVLSG-----VKPNEK--KRFINELQNDENVVAM 788 (932)
Q Consensus 718 D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v~~~-----~~p~~K--~~~v~~l~~~g~~v~~ 788 (932)
-++.|++.++++.|++.|+++.++|+. ..+..+.+.+|+.. +.+++. ..|... ....+.+.-....++|
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 164 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSPNECVV 164 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 367999999999999999999999987 66788888899852 233221 223211 2223333333467999
Q ss_pred EcCCcccHHHHHhCCee
Q 002354 789 VGDGINDAAALASSHIG 805 (932)
Q Consensus 789 vGDg~ND~~al~~A~vg 805 (932)
|||..+|+.+-+.|++.
T Consensus 165 IgD~~~di~aA~~~G~~ 181 (185)
T TIGR02009 165 FEDALAGVQAARAAGMF 181 (185)
T ss_pred EeCcHhhHHHHHHCCCe
Confidence 99999999999999875
No 140
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=96.04 E-value=0.03 Score=58.98 Aligned_cols=79 Identities=14% Similarity=0.192 Sum_probs=59.2
Q ss_pred ccccHHHHHHHHHHHhCCCeEEEEcCCCHHH---HHHHHHHcCCCC-Cceeccc-Chhh------HHHHHHHHhhCCC-E
Q 002354 718 DRIRDDAAHVVNSLSSQGIGVYMLSGDKKNS---AEYVASLVGIPK-DKVLSGV-KPNE------KKRFINELQNDEN-V 785 (932)
Q Consensus 718 D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~---a~~ia~~~gi~~-~~v~~~~-~p~~------K~~~v~~l~~~g~-~ 785 (932)
-+.-|++.+.++.|++.|++|+++||+.... ...--++.|++. ++++-|- .... |.+.-+.+.++|+ +
T Consensus 119 apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYrI 198 (229)
T TIGR01675 119 APALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILRGLEDSNKTVVTYKSEVRKSLMEEGYRI 198 (229)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeecCCCCCCchHhHHHHHHHHHHHhCCceE
Confidence 3667999999999999999999999999765 445556789874 4455443 1122 6677777777776 5
Q ss_pred EEEEcCCcccH
Q 002354 786 VAMVGDGINDA 796 (932)
Q Consensus 786 v~~vGDg~ND~ 796 (932)
++.+||..+|.
T Consensus 199 v~~iGDq~sDl 209 (229)
T TIGR01675 199 WGNIGDQWSDL 209 (229)
T ss_pred EEEECCChHHh
Confidence 67799999996
No 141
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=96.02 E-value=0.029 Score=53.89 Aligned_cols=83 Identities=10% Similarity=0.097 Sum_probs=58.9
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCC-CHHHHHHHHHHcC-------CCC---CceecccChhhH--HHHHHHHh--hCC
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGD-KKNSAEYVASLVG-------IPK---DKVLSGVKPNEK--KRFINELQ--NDE 783 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd-~~~~a~~ia~~~g-------i~~---~~v~~~~~p~~K--~~~v~~l~--~~g 783 (932)
++.+++.+.++.|+++|+++.++|+. ....+..+.+..+ +.. ..+.++-.|+-+ ...++.+. -..
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~~~pkp~~~~~a~~~lg~~~~p 108 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGYWLPKSPRLVEIALKLNGVLKP 108 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcCCCcHHHHHHHHHHHhcCCCCc
Confidence 57999999999999999999999999 7877878778777 321 112222234322 23333444 345
Q ss_pred CEEEEEcCCcccHHHHHh
Q 002354 784 NVVAMVGDGINDAAALAS 801 (932)
Q Consensus 784 ~~v~~vGDg~ND~~al~~ 801 (932)
..++||||...|...++.
T Consensus 109 ~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 109 KSILFVDDRPDNNEEVDY 126 (128)
T ss_pred ceEEEECCCHhHHHHHHh
Confidence 789999999999877654
No 142
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=96.02 E-value=0.026 Score=57.18 Aligned_cols=86 Identities=16% Similarity=0.243 Sum_probs=62.5
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Ccee-ccc----Ch--hhHHHHHHHHhhCCCEEEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKVL-SGV----KP--NEKKRFINELQNDENVVAMV 789 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v~-~~~----~p--~~K~~~v~~l~~~g~~v~~v 789 (932)
++.|++.+.++.|++.|++++++|+..... ..+..++|+.. +.++ +.. .| +--..+.+.+.-....++||
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v 163 (183)
T TIGR01509 85 KPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLFV 163 (183)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEEE
Confidence 578999999999999999999999988877 66666688842 2332 221 22 22233344444456789999
Q ss_pred cCCcccHHHHHhCCee
Q 002354 790 GDGINDAAALASSHIG 805 (932)
Q Consensus 790 GDg~ND~~al~~A~vg 805 (932)
||...|+.+-+.+++-
T Consensus 164 gD~~~di~aA~~~G~~ 179 (183)
T TIGR01509 164 DDSPAGIEAAKAAGMH 179 (183)
T ss_pred cCCHHHHHHHHHcCCE
Confidence 9999999999998873
No 143
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=96.02 E-value=0.016 Score=58.05 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=62.6
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCC---------------CHHHHHHHHHHcCCCCCce-ec-----cc----ChhhHH
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGD---------------KKNSAEYVASLVGIPKDKV-LS-----GV----KPNEKK 773 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd---------------~~~~a~~ia~~~gi~~~~v-~~-----~~----~p~~K~ 773 (932)
++-|++.+++++|+++|++++++|-. ....+..+.+.+|+..+.+ ++ .. .|. .
T Consensus 29 ~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~ii~~~~~~~~~~~~~KP~--~ 106 (161)
T TIGR01261 29 RFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGIIFDDVLICPHFPDDNCDCRKPK--I 106 (161)
T ss_pred eECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCceeEEEECCCCCCCCCCCCCCC--H
Confidence 35688999999999999999999964 2456778888999974334 33 11 222 2
Q ss_pred HHHHHH----hhCCCEEEEEcCCcccHHHHHhCCeeEEe
Q 002354 774 RFINEL----QNDENVVAMVGDGINDAAALASSHIGVAM 808 (932)
Q Consensus 774 ~~v~~l----~~~g~~v~~vGDg~ND~~al~~A~vgIa~ 808 (932)
.++..+ ......+.||||+.+|+.+-+.+++-...
T Consensus 107 ~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~ 145 (161)
T TIGR01261 107 KLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQ 145 (161)
T ss_pred HHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEE
Confidence 333322 22335699999999999999999987443
No 144
>PLN02940 riboflavin kinase
Probab=95.95 E-value=0.024 Score=65.02 Aligned_cols=105 Identities=16% Similarity=0.182 Sum_probs=72.7
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHH-HcCCCC--Cceecc-----cCh--hhHHHHHHHHhhCCCEEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVAS-LVGIPK--DKVLSG-----VKP--NEKKRFINELQNDENVVAM 788 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~-~~gi~~--~~v~~~-----~~p--~~K~~~v~~l~~~g~~v~~ 788 (932)
++.|++.+.++.|++.|+++.++|+.....+....+ ..|+.. +.+++. -.| +-=...++.+.-..+.++|
T Consensus 93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~l~ 172 (382)
T PLN02940 93 KALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNCLV 172 (382)
T ss_pred CCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHEEE
Confidence 467999999999999999999999999888887765 678742 123221 122 2223444444445678999
Q ss_pred EcCCcccHHHHHhCCee-EEecCc--hHHHHhhcCEEE
Q 002354 789 VGDGINDAAALASSHIG-VAMGGG--VGAASEVASVVL 823 (932)
Q Consensus 789 vGDg~ND~~al~~A~vg-Ia~~~~--~~~a~~~ad~vl 823 (932)
|||..+|+.+-+.|++. |++..+ .+.....+|.++
T Consensus 173 VGDs~~Di~aA~~aGi~~I~v~~g~~~~~~~~~ad~~i 210 (382)
T PLN02940 173 IEDSLPGVMAGKAAGMEVIAVPSIPKQTHLYSSADEVI 210 (382)
T ss_pred EeCCHHHHHHHHHcCCEEEEECCCCcchhhccCccEEe
Confidence 99999999999999987 344332 222334566665
No 145
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=95.95 E-value=0.02 Score=64.07 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=79.6
Q ss_pred eEEEEEECCEEEEEEEecc--------cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHH----cCCCCCceeccc
Q 002354 700 SLVYVGVDNMLAGLIYVED--------RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASL----VGIPKDKVLSGV 767 (932)
Q Consensus 700 ~~~~va~~~~~lG~i~l~D--------~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~----~gi~~~~v~~~~ 767 (932)
.++.+..|+++-+-+.-+| ++.+++.++++.|+++|+.+.++|..+...+..+-+. +|+...-.....
T Consensus 4 k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~ 83 (320)
T TIGR01686 4 KVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDARSI 83 (320)
T ss_pred EEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeEEEE
Confidence 3455566777665555555 4568999999999999999999999999999999999 888632111112
Q ss_pred ChhhHHHHHH----HHhhCCCEEEEEcCCcccHHHHHhCCeeEEec
Q 002354 768 KPNEKKRFIN----ELQNDENVVAMVGDGINDAAALASSHIGVAMG 809 (932)
Q Consensus 768 ~p~~K~~~v~----~l~~~g~~v~~vGDg~ND~~al~~A~vgIa~~ 809 (932)
.++-|.+.++ .+.-....++||||...|+.+.+.+...+.+-
T Consensus 84 ~~~pk~~~i~~~~~~l~i~~~~~vfidD~~~d~~~~~~~lp~~~~~ 129 (320)
T TIGR01686 84 NWGPKSESLRKIAKKLNLGTDSFLFIDDNPAERANVKITLPVKTLL 129 (320)
T ss_pred ecCchHHHHHHHHHHhCCCcCcEEEECCCHHHHHHHHHHCCCCccC
Confidence 2333444444 33334578999999999999999988876553
No 146
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=95.83 E-value=0.043 Score=56.13 Aligned_cols=58 Identities=22% Similarity=0.323 Sum_probs=47.4
Q ss_pred CCeEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 002354 698 NQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIP 759 (932)
Q Consensus 698 g~~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~ 759 (932)
...+++...|+++++ =..+ ...+.+.+.+|+++|++|+.+|.-.......+-+.+|++
T Consensus 6 ~~~lIFtDlD~TLl~-~~ye---~~pA~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~ 63 (274)
T COG3769 6 MPLLIFTDLDGTLLP-HSYE---WQPAAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQ 63 (274)
T ss_pred cceEEEEcccCcccC-CCCC---CCccchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Confidence 345778888898887 3333 234778999999999999999999999999999999985
No 147
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=95.78 E-value=0.023 Score=56.05 Aligned_cols=83 Identities=20% Similarity=0.232 Sum_probs=57.9
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC--CCceecc----cCh--hhHHHHHHHHhhCCCEEEEEc
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIP--KDKVLSG----VKP--NEKKRFINELQNDENVVAMVG 790 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~--~~~v~~~----~~p--~~K~~~v~~l~~~g~~v~~vG 790 (932)
...+++.+.++.|++.|+++.++|+.....+....+.. +. .+.+++. -.| +-=..+.+.+.-.. .++|||
T Consensus 64 ~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~~l~iG 141 (154)
T TIGR01549 64 AYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFDLILGSDEFGAKPEPEIFLAALESLGLPP-EVLHVG 141 (154)
T ss_pred eeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCcEEEecCCCCCCcCHHHHHHHHHHcCCCC-CEEEEe
Confidence 34478999999999999999999999999998888875 32 1223221 122 11122333333334 799999
Q ss_pred CCcccHHHHHhCC
Q 002354 791 DGINDAAALASSH 803 (932)
Q Consensus 791 Dg~ND~~al~~A~ 803 (932)
|..+|+.+-+.|+
T Consensus 142 Ds~~Di~aa~~aG 154 (154)
T TIGR01549 142 DNLNDIEGARNAG 154 (154)
T ss_pred CCHHHHHHHHHcc
Confidence 9999999888764
No 148
>PRK09449 dUMP phosphatase; Provisional
Probab=95.74 E-value=0.05 Score=57.39 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=75.4
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Ccee-ccc----Chhh--HHHHHHHHhhC-CCEEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKVL-SGV----KPNE--KKRFINELQND-ENVVAM 788 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v~-~~~----~p~~--K~~~v~~l~~~-g~~v~~ 788 (932)
++.|++.++++.|+ .|+++.++|......+...-+.+|+.. +.++ +.. .|.- =...++.+.-. ...++|
T Consensus 95 ~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~~ 173 (224)
T PRK09449 95 TPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRVLM 173 (224)
T ss_pred ccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccEEE
Confidence 46799999999999 689999999988888888888999842 2332 221 2321 12233333222 257999
Q ss_pred EcCCc-ccHHHHHhCCee-EEec-CchHH-HHhhcCEEEeCCChhHHHHHH
Q 002354 789 VGDGI-NDAAALASSHIG-VAMG-GGVGA-ASEVASVVLMGNRLSQLLVAL 835 (932)
Q Consensus 789 vGDg~-ND~~al~~A~vg-Ia~~-~~~~~-a~~~ad~vl~~~~~~~i~~~i 835 (932)
|||.. +|+.+-+.|++- |.+. .+... ....+|+++ +++..+..++
T Consensus 174 vgD~~~~Di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~i--~~~~el~~~l 222 (224)
T PRK09449 174 VGDNLHSDILGGINAGIDTCWLNAHGREQPEGIAPTYQV--SSLSELEQLL 222 (224)
T ss_pred EcCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCeEEE--CCHHHHHHHH
Confidence 99998 799999999985 4443 22211 112467776 4677666554
No 149
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=95.68 E-value=0.079 Score=56.80 Aligned_cols=100 Identities=17% Similarity=0.254 Sum_probs=68.5
Q ss_pred CCeEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHH--HHHHHcCCCC---CceecccChhh-
Q 002354 698 NQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAE--YVASLVGIPK---DKVLSGVKPNE- 771 (932)
Q Consensus 698 g~~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~--~ia~~~gi~~---~~v~~~~~p~~- 771 (932)
....+.+..|+++. -.+.+-|++.+++++|+++|+++.++|........ ...+++|++. +.++ ++.+
T Consensus 7 ~~~~~~~D~dG~l~----~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii---~s~~~ 79 (242)
T TIGR01459 7 DYDVFLLDLWGVII----DGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMII---SSGEI 79 (242)
T ss_pred cCCEEEEecccccc----cCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEE---ccHHH
Confidence 34556666666553 45678999999999999999999999986665544 5678999974 2332 2222
Q ss_pred HHHHHHHH-hh---CCCEEEEEcCCcccHHHHHhCCe
Q 002354 772 KKRFINEL-QN---DENVVAMVGDGINDAAALASSHI 804 (932)
Q Consensus 772 K~~~v~~l-~~---~g~~v~~vGDg~ND~~al~~A~v 804 (932)
....+... ++ .+..+.++||+.+|...+...+.
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 80 AVQMILESKKRFDIRNGIIYLLGHLENDIINLMQCYT 116 (242)
T ss_pred HHHHHHhhhhhccCCCceEEEeCCcccchhhhcCCCc
Confidence 11233322 22 35679999999999998865543
No 150
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=95.62 E-value=0.028 Score=63.32 Aligned_cols=90 Identities=18% Similarity=0.141 Sum_probs=63.8
Q ss_pred ccccHHHHHHHHHHHhCCCeEEEEcCC---------------CHHHHHHHHHHcCCCCCcee-cc-----c--ChhhHHH
Q 002354 718 DRIRDDAAHVVNSLSSQGIGVYMLSGD---------------KKNSAEYVASLVGIPKDKVL-SG-----V--KPNEKKR 774 (932)
Q Consensus 718 D~lr~~~~~~i~~L~~~Gi~v~~~TGd---------------~~~~a~~ia~~~gi~~~~v~-~~-----~--~p~~K~~ 774 (932)
-++.|++.+.+++|++.|++++++|.- ....+..+.+..|+..+.++ +. - ...-|..
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~fd~i~i~~~~~sd~~~~rKP~p~ 108 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIKFDEVLICPHFPEDNCSCRKPKTG 108 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCceeeEEEeCCcCcccCCCCCCCHH
Confidence 367899999999999999999999973 24456778888888643333 21 0 0011233
Q ss_pred HHHHHhh----CCCEEEEEcCCcccHHHHHhCCeeEE
Q 002354 775 FINELQN----DENVVAMVGDGINDAAALASSHIGVA 807 (932)
Q Consensus 775 ~v~~l~~----~g~~v~~vGDg~ND~~al~~A~vgIa 807 (932)
++..+.+ ....+.||||+.+|..+-+.|++-..
T Consensus 109 ~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I 145 (354)
T PRK05446 109 LVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGI 145 (354)
T ss_pred HHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEE
Confidence 4433322 34789999999999999999998743
No 151
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=95.59 E-value=0.054 Score=54.33 Aligned_cols=104 Identities=22% Similarity=0.240 Sum_probs=83.0
Q ss_pred hCCCeEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCe--EEEEcCC-------CHHHHHHHHHHcCCCCCce-ec
Q 002354 696 LMNQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIG--VYMLSGD-------KKNSAEYVASLVGIPKDKV-LS 765 (932)
Q Consensus 696 ~~g~~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~--v~~~TGd-------~~~~a~~ia~~~gi~~~~v-~~ 765 (932)
..|.+.+.+..|+++.. --++++.|+..+.+++|++.+.. ++++|-. +...|..+.+.+|++ .+ +.
T Consensus 38 ~~Gik~li~DkDNTL~~--~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIp--vl~h~ 113 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTP--PYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIP--VLRHR 113 (168)
T ss_pred hcCceEEEEcCCCCCCC--CCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCc--EEEeC
Confidence 46788888888998753 46789999999999999999874 9999975 488999999999996 33 44
Q ss_pred ccChhhHHHHHHHHhhC-----CCEEEEEcCC-cccHHHHHhCC
Q 002354 766 GVKPNEKKRFINELQND-----ENVVAMVGDG-INDAAALASSH 803 (932)
Q Consensus 766 ~~~p~~K~~~v~~l~~~-----g~~v~~vGDg-~ND~~al~~A~ 803 (932)
...|....++.+.++.+ .+.++||||- ..|+-+=...+
T Consensus 114 ~kKP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G 157 (168)
T PF09419_consen 114 AKKPGCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMG 157 (168)
T ss_pred CCCCccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccC
Confidence 56887777888888765 6789999997 56766655544
No 152
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=95.59 E-value=0.067 Score=67.30 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=49.9
Q ss_pred HHhCCCeEEEEEECCEEEEEEEecccccHHHHHHHHHH-HhCCCeEEEEcCCCHHHHHHHHHHc
Q 002354 694 EDLMNQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSL-SSQGIGVYMLSGDKKNSAEYVASLV 756 (932)
Q Consensus 694 ~~~~g~~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L-~~~Gi~v~~~TGd~~~~a~~ia~~~ 756 (932)
+.....+.+++.+||+++-.-...-.+.++..+++++| ++.|+.|+++||+...+....-..+
T Consensus 591 y~~~~~rlI~LDyDGTLlp~~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~~~ 654 (854)
T PLN02205 591 YKRTTTRAILLDYDGTLMPQASIDKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFSPC 654 (854)
T ss_pred HHhhcCeEEEEecCCcccCCccccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhCCC
Confidence 44456788999999999844333346678999999997 7889999999999999988777543
No 153
>PLN02811 hydrolase
Probab=95.40 E-value=0.051 Score=57.29 Aligned_cols=89 Identities=18% Similarity=0.241 Sum_probs=59.1
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHH-HHHHcCCCC--Cceeccc-------Ch--hhHHHHHHHHh---hCC
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEY-VASLVGIPK--DKVLSGV-------KP--NEKKRFINELQ---NDE 783 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~-ia~~~gi~~--~~v~~~~-------~p--~~K~~~v~~l~---~~g 783 (932)
++.|++.+.|+.|++.|+++.++||-....... ..+..++.. +.+++.- .| +-=...++.+. -..
T Consensus 78 ~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 157 (220)
T PLN02811 78 DLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVDP 157 (220)
T ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCCc
Confidence 567999999999999999999999987654432 332234421 1232222 11 11133344443 234
Q ss_pred CEEEEEcCCcccHHHHHhCCeeEE
Q 002354 784 NVVAMVGDGINDAAALASSHIGVA 807 (932)
Q Consensus 784 ~~v~~vGDg~ND~~al~~A~vgIa 807 (932)
+.++||||...|+.+-+.|++-..
T Consensus 158 ~~~v~IgDs~~di~aA~~aG~~~i 181 (220)
T PLN02811 158 GKVLVFEDAPSGVEAAKNAGMSVV 181 (220)
T ss_pred cceEEEeccHhhHHHHHHCCCeEE
Confidence 679999999999999999998643
No 154
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=95.35 E-value=0.056 Score=56.07 Aligned_cols=86 Identities=16% Similarity=0.223 Sum_probs=60.3
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Cceec-c----cChhh--HHHHHHHHhhCCCEEEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKVLS-G----VKPNE--KKRFINELQNDENVVAMV 789 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v~~-~----~~p~~--K~~~v~~l~~~g~~v~~v 789 (932)
.+-|++.++++.|++.|+++.++|+-.. ......+.+|+.. +.++. . ..|+- =..+.+.+.-....++||
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~-~~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~I 183 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDS-RLRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALHI 183 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCch-hHHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEEE
Confidence 5678999999999999999999997655 4577888899842 22322 1 12321 122333333345789999
Q ss_pred cCCc-ccHHHHHhCCee
Q 002354 790 GDGI-NDAAALASSHIG 805 (932)
Q Consensus 790 GDg~-ND~~al~~A~vg 805 (932)
||.. +|+.+-+.|++-
T Consensus 184 gD~~~~Di~~A~~aG~~ 200 (203)
T TIGR02252 184 GDSLRNDYQGARAAGWR 200 (203)
T ss_pred CCCchHHHHHHHHcCCe
Confidence 9997 899999988764
No 155
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=95.25 E-value=0.019 Score=56.73 Aligned_cols=91 Identities=14% Similarity=0.108 Sum_probs=66.1
Q ss_pred cccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC---Cceecc-cChhhHHHHHHHH---hhCCCEEEEE
Q 002354 717 EDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK---DKVLSG-VKPNEKKRFINEL---QNDENVVAMV 789 (932)
Q Consensus 717 ~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~---~~v~~~-~~p~~K~~~v~~l---~~~g~~v~~v 789 (932)
.-.+||++.+.++.|+ .++++.++|.-+...+..+.+.+++.. +.++++ -....|-.+.+.+ ......++||
T Consensus 43 ~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i 121 (148)
T smart00577 43 YVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYFGYRRLFRDECVFVKGKYVKDLSLLGRDLSNVIII 121 (148)
T ss_pred EEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCEeeeEEECccccccCCeEeecHHHcCCChhcEEEE
Confidence 3457999999999999 579999999999999999999999852 223322 1222232243333 3445789999
Q ss_pred cCCcccHHHHHhCCeeEEe
Q 002354 790 GDGINDAAALASSHIGVAM 808 (932)
Q Consensus 790 GDg~ND~~al~~A~vgIa~ 808 (932)
||..+|..+-+.+++-|..
T Consensus 122 ~Ds~~~~~aa~~ngI~i~~ 140 (148)
T smart00577 122 DDSPDSWPFHPENLIPIKP 140 (148)
T ss_pred ECCHHHhhcCccCEEEecC
Confidence 9999999987777665543
No 156
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=94.83 E-value=0.074 Score=56.39 Aligned_cols=79 Identities=19% Similarity=0.310 Sum_probs=62.1
Q ss_pred cccHHHHHHHHHH--HhCCCeEEEEcCCCHHHHHHHHHHcCCCCC--ceec----------------------ccCh-hh
Q 002354 719 RIRDDAAHVVNSL--SSQGIGVYMLSGDKKNSAEYVASLVGIPKD--KVLS----------------------GVKP-NE 771 (932)
Q Consensus 719 ~lr~~~~~~i~~L--~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~--~v~~----------------------~~~p-~~ 771 (932)
++.|+.++.++.+ ++.|+.++++|--|..--..+-+.-|+... .||+ .+.| --
T Consensus 71 p~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~NmC 150 (234)
T PF06888_consen 71 PIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPPNMC 150 (234)
T ss_pred CCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCCccc
Confidence 5678899999999 568999999999999999999999998531 2222 1222 36
Q ss_pred HHHHHHHHhhC----C---CEEEEEcCCcccHH
Q 002354 772 KKRFINELQND----E---NVVAMVGDGINDAA 797 (932)
Q Consensus 772 K~~~v~~l~~~----g---~~v~~vGDg~ND~~ 797 (932)
|..+++.+++. | .+|.+||||.||.-
T Consensus 151 K~~il~~~~~~~~~~g~~~~rviYiGDG~nD~C 183 (234)
T PF06888_consen 151 KGKILERLLQEQAQRGVPYDRVIYIGDGRNDFC 183 (234)
T ss_pred hHHHHHHHHHHHhhcCCCcceEEEECCCCCCcC
Confidence 99999988765 4 68999999999963
No 157
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=94.68 E-value=0.11 Score=54.94 Aligned_cols=93 Identities=11% Similarity=0.182 Sum_probs=66.2
Q ss_pred ecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHc---CCCC--Cceec---ccCh--hhHHHHHHHHhhCCCE
Q 002354 716 VEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLV---GIPK--DKVLS---GVKP--NEKKRFINELQNDENV 785 (932)
Q Consensus 716 l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~---gi~~--~~v~~---~~~p--~~K~~~v~~l~~~g~~ 785 (932)
++-++.|++.+++++|+++|+++.++|..+......+-+.. ++.. +.+|. ...| +-=..+.+.+.-....
T Consensus 92 ~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p~e 171 (220)
T TIGR01691 92 LTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYFDTTVGLKTEAQSYVKIAGQLGSPPRE 171 (220)
T ss_pred cccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEEEeCcccCCCHHHHHHHHHHhCcChhH
Confidence 44578999999999999999999999988887777766664 3321 11221 1222 2224445555445578
Q ss_pred EEEEcCCcccHHHHHhCCeeEEe
Q 002354 786 VAMVGDGINDAAALASSHIGVAM 808 (932)
Q Consensus 786 v~~vGDg~ND~~al~~A~vgIa~ 808 (932)
++||||...|+.|-++|++-...
T Consensus 172 ~lfVgDs~~Di~AA~~AG~~ti~ 194 (220)
T TIGR01691 172 ILFLSDIINELDAARKAGLHTGQ 194 (220)
T ss_pred EEEEeCCHHHHHHHHHcCCEEEE
Confidence 99999999999999999997544
No 158
>PLN02151 trehalose-phosphatase
Probab=94.62 E-value=0.24 Score=55.69 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=45.3
Q ss_pred hCCCeEEEEEECCEEEEEEEecc--cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHH
Q 002354 696 LMNQSLVYVGVDNMLAGLIYVED--RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVAS 754 (932)
Q Consensus 696 ~~g~~~~~va~~~~~lG~i~l~D--~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~ 754 (932)
......+++.+||+++-+..--| .+.++++++|+.|.+ +..++++||++......+..
T Consensus 95 ~~~~~ll~lDyDGTL~PIv~~P~~A~~~~~~~~aL~~La~-~~~vaIvSGR~~~~l~~~~~ 154 (354)
T PLN02151 95 EGKQIVMFLDYDGTLSPIVDDPDRAFMSKKMRNTVRKLAK-CFPTAIVSGRCREKVSSFVK 154 (354)
T ss_pred cCCceEEEEecCccCCCCCCCcccccCCHHHHHHHHHHhc-CCCEEEEECCCHHHHHHHcC
Confidence 33557888899999986554333 367899999999994 57999999999888877654
No 159
>PLN02645 phosphoglycolate phosphatase
Probab=93.93 E-value=0.13 Score=57.49 Aligned_cols=103 Identities=10% Similarity=0.145 Sum_probs=69.1
Q ss_pred CCeEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHH---HHcCCCC--CceecccChhh-
Q 002354 698 NQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVA---SLVGIPK--DKVLSGVKPNE- 771 (932)
Q Consensus 698 g~~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia---~~~gi~~--~~v~~~~~p~~- 771 (932)
....+++..||++. -.+.+-|++.++|++|+++|++++++|+++..+...++ +.+|++. +.++. +..
T Consensus 27 ~~~~~~~D~DGtl~----~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~t---s~~~ 99 (311)
T PLN02645 27 SVETFIFDCDGVIW----KGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFS---SSFA 99 (311)
T ss_pred hCCEEEEeCcCCeE----eCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEee---hHHH
Confidence 46678888888765 34667799999999999999999999999977666666 5688742 23332 221
Q ss_pred HHHHHHHHhh-CCCEEEEEcCCcccHHHHHhCCeeEEe
Q 002354 772 KKRFINELQN-DENVVAMVGDGINDAAALASSHIGVAM 808 (932)
Q Consensus 772 K~~~v~~l~~-~g~~v~~vGDg~ND~~al~~A~vgIa~ 808 (932)
....++.... .+.. .++++...|..+++.+++=+.-
T Consensus 100 ~~~~l~~~~~~~~~~-V~viG~~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 100 AAAYLKSINFPKDKK-VYVIGEEGILEELELAGFQYLG 136 (311)
T ss_pred HHHHHHhhccCCCCE-EEEEcCHHHHHHHHHCCCEEec
Confidence 1222222211 1334 5555567899999998875543
No 160
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=93.88 E-value=0.3 Score=63.28 Aligned_cols=105 Identities=14% Similarity=0.155 Sum_probs=76.2
Q ss_pred ccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC---Cceecc-----cCh--hhHHHHHHHHhhCCCEEEEE
Q 002354 720 IRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK---DKVLSG-----VKP--NEKKRFINELQNDENVVAMV 789 (932)
Q Consensus 720 lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~---~~v~~~-----~~p--~~K~~~v~~l~~~g~~v~~v 789 (932)
+-|++.+.++.|+++|+++.++|+-....+..+.+.+|+.. +.+++. ..| +-=....+.+.-..+.++||
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~I 241 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVVI 241 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEEEE
Confidence 57899999999999999999999999999999999999851 233221 122 22234445554456789999
Q ss_pred cCCcccHHHHHhCCee-EEecCc---hHHHHhhcCEEEe
Q 002354 790 GDGINDAAALASSHIG-VAMGGG---VGAASEVASVVLM 824 (932)
Q Consensus 790 GDg~ND~~al~~A~vg-Ia~~~~---~~~a~~~ad~vl~ 824 (932)
||..+|+.+-+.|++- |++..+ .+.....+|+++.
T Consensus 242 gDs~~Di~AA~~aGm~~I~v~~~~~~~~L~~~~a~~vi~ 280 (1057)
T PLN02919 242 EDALAGVQAARAAGMRCIAVTTTLSEEILKDAGPSLIRK 280 (1057)
T ss_pred cCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEEC
Confidence 9999999999999984 444322 2333456777774
No 161
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=93.61 E-value=0.54 Score=50.93 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=41.0
Q ss_pred EEEEEECCEEEEEEEeccc----ccHHHHHHHHHHHhCCCeEEEEcCCCHHH---HHHHHHHcCCC
Q 002354 701 LVYVGVDNMLAGLIYVEDR----IRDDAAHVVNSLSSQGIGVYMLSGDKKNS---AEYVASLVGIP 759 (932)
Q Consensus 701 ~~~va~~~~~lG~i~l~D~----lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~---a~~ia~~~gi~ 759 (932)
.+++..||++. -.++ +-|++.++|++|+++|++++++||++..+ .....+++|++
T Consensus 3 ~i~~D~DGtl~----~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~ 64 (257)
T TIGR01458 3 GVLLDISGVLY----ISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD 64 (257)
T ss_pred EEEEeCCCeEE----eCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 34555666654 3455 78899999999999999999999976665 44555667763
No 162
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=93.35 E-value=0.17 Score=46.43 Aligned_cols=86 Identities=20% Similarity=0.302 Sum_probs=55.1
Q ss_pred EEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHH---HHcCCCC--CceecccChhhHHHHHHHHhh--CCCE
Q 002354 713 LIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVA---SLVGIPK--DKVLSGVKPNEKKRFINELQN--DENV 785 (932)
Q Consensus 713 ~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia---~~~gi~~--~~v~~~~~p~~K~~~v~~l~~--~g~~ 785 (932)
.+...+++-|++.++|+.|+++|++++++|-.+..+...++ +.+|++. ++++ +|.+ ...+.|++ .+.+
T Consensus 8 vl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~---ts~~--~~~~~l~~~~~~~~ 82 (101)
T PF13344_consen 8 VLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEII---TSGM--AAAEYLKEHKGGKK 82 (101)
T ss_dssp TSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEE---EHHH--HHHHHHHHHTTSSE
T ss_pred EeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEE---ChHH--HHHHHHHhcCCCCE
Confidence 34457889999999999999999999999977655444433 6778752 2232 2221 23333433 5789
Q ss_pred EEEEcCCcccHHHHHhCCe
Q 002354 786 VAMVGDGINDAAALASSHI 804 (932)
Q Consensus 786 v~~vGDg~ND~~al~~A~v 804 (932)
|..+|.. .....++.+++
T Consensus 83 v~vlG~~-~l~~~l~~~G~ 100 (101)
T PF13344_consen 83 VYVLGSD-GLREELREAGF 100 (101)
T ss_dssp EEEES-H-HHHHHHHHTTE
T ss_pred EEEEcCH-HHHHHHHHcCC
Confidence 9999986 66667776654
No 163
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=93.09 E-value=0.13 Score=53.70 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=57.6
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHH--HHHHHHHcCCCC--Cceecc-----cChhhH--HHHHHHHhhCCCEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNS--AEYVASLVGIPK--DKVLSG-----VKPNEK--KRFINELQNDENVVA 787 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~--a~~ia~~~gi~~--~~v~~~-----~~p~~K--~~~v~~l~~~g~~v~ 787 (932)
++.|++.+.++.|+++|+++.++|...... ........++.. +.++.. ..|+-. ....+.+.-....++
T Consensus 94 ~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~~l 173 (211)
T TIGR02247 94 KLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPEECV 173 (211)
T ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHHHeE
Confidence 568999999999999999999999865432 332233344421 233321 133221 233334433456799
Q ss_pred EEcCCcccHHHHHhCCeeE
Q 002354 788 MVGDGINDAAALASSHIGV 806 (932)
Q Consensus 788 ~vGDg~ND~~al~~A~vgI 806 (932)
||||...|+.+-++|++-.
T Consensus 174 ~i~D~~~di~aA~~aG~~~ 192 (211)
T TIGR02247 174 FLDDLGSNLKPAAALGITT 192 (211)
T ss_pred EEcCCHHHHHHHHHcCCEE
Confidence 9999999999999999853
No 164
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=93.06 E-value=0.55 Score=40.99 Aligned_cols=66 Identities=33% Similarity=0.485 Sum_probs=50.3
Q ss_pred EEEEEecCCCChhhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeCCCccccchhhhhhHHHHHHHHHhcCcccc
Q 002354 127 VIILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAKVIPNWQRQLGEALAKHLTSCGFKSS 200 (932)
Q Consensus 127 ~~~l~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~~~~~~~~~~~~~~~~~i~~~i~~~Gy~~~ 200 (932)
+..+.+.||.|..|...++..+...+++....++....+..+.++...... +.+...+++.||...
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~ 89 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNV--------KALTEATTDAGYPSS 89 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCH--------HHHHHHHHhcCCCeE
Confidence 456779999999999999999999999989999999988777765432222 334455566777643
No 165
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=92.94 E-value=0.33 Score=49.96 Aligned_cols=90 Identities=23% Similarity=0.300 Sum_probs=66.8
Q ss_pred cccHHHHHHHHHHHhCCC-eEEEEcCCCHHHHHHHHHHcCCCC------------------------CceecccChhh--
Q 002354 719 RIRDDAAHVVNSLSSQGI-GVYMLSGDKKNSAEYVASLVGIPK------------------------DKVLSGVKPNE-- 771 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi-~v~~~TGd~~~~a~~ia~~~gi~~------------------------~~v~~~~~p~~-- 771 (932)
++-|+..++|+.+++.|. .++++|--|.--...+-+..|+.. ..--|..-|..
T Consensus 84 P~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNmC 163 (256)
T KOG3120|consen 84 PIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNMC 163 (256)
T ss_pred CCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCchhhh
Confidence 668999999999999997 899999889999999999999831 00112334433
Q ss_pred HHHHHHHHhhCC-------CEEEEEcCCcccH-HHHHhCCeeEEe
Q 002354 772 KKRFINELQNDE-------NVVAMVGDGINDA-AALASSHIGVAM 808 (932)
Q Consensus 772 K~~~v~~l~~~g-------~~v~~vGDg~ND~-~al~~A~vgIa~ 808 (932)
|..++..++.++ +++.++|||.||. |+++...--+||
T Consensus 164 Kg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~am 208 (256)
T KOG3120|consen 164 KGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAM 208 (256)
T ss_pred hhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceec
Confidence 677777665432 3799999999994 677666666666
No 166
>PRK10444 UMP phosphatase; Provisional
Probab=92.74 E-value=0.38 Score=51.80 Aligned_cols=53 Identities=17% Similarity=0.334 Sum_probs=42.5
Q ss_pred EEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHH---cCC
Q 002354 702 VYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASL---VGI 758 (932)
Q Consensus 702 ~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~---~gi 758 (932)
+++..||++ .-.+++-|++.++++.|+++|++++++|++...+...++++ +|+
T Consensus 4 v~~DlDGtL----~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~ 59 (248)
T PRK10444 4 VICDIDGVL----MHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGV 59 (248)
T ss_pred EEEeCCCce----EeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 344455554 44678899999999999999999999999999888777776 466
No 167
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=92.74 E-value=0.1 Score=55.40 Aligned_cols=81 Identities=20% Similarity=0.335 Sum_probs=59.0
Q ss_pred ccccHHHHHHHHHHHhCCCeEEEEcCCCHH---HHHHHHHHcCCCC-CceecccCh--------hhHHHHHHHHhhCCC-
Q 002354 718 DRIRDDAAHVVNSLSSQGIGVYMLSGDKKN---SAEYVASLVGIPK-DKVLSGVKP--------NEKKRFINELQNDEN- 784 (932)
Q Consensus 718 D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~---~a~~ia~~~gi~~-~~v~~~~~p--------~~K~~~v~~l~~~g~- 784 (932)
++.-|++.+.++.+++.|++|+++||++.. ....-.++.|+.. +.++.+-.. +.|...-+.++++|+
T Consensus 114 ~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy~ 193 (229)
T PF03767_consen 114 APAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKKGYR 193 (229)
T ss_dssp GEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSCGEEEEESSTSS------SHHHHHHHHHTTEE
T ss_pred CcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccchhccccccccccccccccchHHHHHHHHcCCc
Confidence 355678999999999999999999998655 3344456778854 444433222 248888888888864
Q ss_pred EEEEEcCCcccHHH
Q 002354 785 VVAMVGDGINDAAA 798 (932)
Q Consensus 785 ~v~~vGDg~ND~~a 798 (932)
+++++||..+|...
T Consensus 194 Ii~~iGD~~~D~~~ 207 (229)
T PF03767_consen 194 IIANIGDQLSDFSG 207 (229)
T ss_dssp EEEEEESSGGGCHC
T ss_pred EEEEeCCCHHHhhc
Confidence 67889999999754
No 168
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=92.55 E-value=0.43 Score=49.35 Aligned_cols=88 Identities=16% Similarity=0.211 Sum_probs=58.7
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHH-cCCCC--Ccee-cc----cChh--hHHHHHHHHhhCCCEEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASL-VGIPK--DKVL-SG----VKPN--EKKRFINELQNDENVVAM 788 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~-~gi~~--~~v~-~~----~~p~--~K~~~v~~l~~~g~~v~~ 788 (932)
++.|++.++++.|++.|+++.++|.-+.......... .++.. +.++ +. ..|+ -=...++.+.-....++|
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~ 163 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAVF 163 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeEE
Confidence 4689999999999999999999998776655443222 23321 1222 21 1232 112334444444577999
Q ss_pred EcCCcccHHHHHhCCeeE
Q 002354 789 VGDGINDAAALASSHIGV 806 (932)
Q Consensus 789 vGDg~ND~~al~~A~vgI 806 (932)
|||...|+.+-+.+++-.
T Consensus 164 vgD~~~di~aA~~aG~~~ 181 (199)
T PRK09456 164 FDDNADNIEAANALGITS 181 (199)
T ss_pred eCCCHHHHHHHHHcCCEE
Confidence 999999999999999854
No 169
>COG4907 Predicted membrane protein [Function unknown]
Probab=92.06 E-value=0.1 Score=58.38 Aligned_cols=12 Identities=67% Similarity=1.492 Sum_probs=4.8
Q ss_pred CCCCCCCCCCCC
Q 002354 87 GDVGGGGGGGGG 98 (932)
Q Consensus 87 ~~~~~~~~~~~~ 98 (932)
+|+.|||+||||
T Consensus 580 ~G~~gGg~GGGG 591 (595)
T COG4907 580 GGFSGGGSGGGG 591 (595)
T ss_pred CCcCCCCCCCCC
Confidence 333444444333
No 170
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=91.94 E-value=0.76 Score=49.52 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=44.3
Q ss_pred EEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcC---CCHHHHHHHHHHcCCC
Q 002354 701 LVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSG---DKKNSAEYVASLVGIP 759 (932)
Q Consensus 701 ~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TG---d~~~~a~~ia~~~gi~ 759 (932)
.+++..||++. -.+..-+++.++|++|+++|++++++|| ++........+++|++
T Consensus 3 ~~~~D~DGtl~----~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~ 60 (249)
T TIGR01457 3 GYLIDLDGTMY----KGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIP 60 (249)
T ss_pred EEEEeCCCceE----cCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 45566677665 3466667999999999999999999996 7788888888888874
No 171
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=91.73 E-value=2.2 Score=46.74 Aligned_cols=98 Identities=15% Similarity=0.242 Sum_probs=64.1
Q ss_pred eEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHH---HHHHHcCCCC--CceecccChhhHHH
Q 002354 700 SLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAE---YVASLVGIPK--DKVLSGVKPNEKKR 774 (932)
Q Consensus 700 ~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~---~ia~~~gi~~--~~v~~~~~p~~K~~ 774 (932)
..+++..||++. -.+..-+++.++|++|++.|++++++|++...+.. .-.+++|++. ++++ ++.. .
T Consensus 3 ~~~~~D~DGtl~----~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~---ts~~--~ 73 (279)
T TIGR01452 3 QGFIFDCDGVLW----LGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLF---SSAL--C 73 (279)
T ss_pred cEEEEeCCCceE----cCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEe---cHHH--H
Confidence 345667777764 35677788999999999999999999997644332 3346678752 1222 2221 1
Q ss_pred HHHHHhh---CCCEEEEEcCCcccHHHHHhCCeeEE
Q 002354 775 FINELQN---DENVVAMVGDGINDAAALASSHIGVA 807 (932)
Q Consensus 775 ~v~~l~~---~g~~v~~vGDg~ND~~al~~A~vgIa 807 (932)
..+.|++ .+..|.++|+. .....++.+++-+.
T Consensus 74 ~~~~l~~~~~~~~~v~~iG~~-~~~~~l~~~g~~~~ 108 (279)
T TIGR01452 74 AARLLRQPPDAPKAVYVIGEE-GLRAELDAAGIRLA 108 (279)
T ss_pred HHHHHHhhCcCCCEEEEEcCH-HHHHHHHHCCCEEe
Confidence 2233444 35689999985 45667777776654
No 172
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=91.56 E-value=0.49 Score=48.15 Aligned_cols=85 Identities=14% Similarity=0.180 Sum_probs=63.1
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Cceecc---------cChhh--HHHHHHHHhhCCCE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKVLSG---------VKPNE--KKRFINELQNDENV 785 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v~~~---------~~p~~--K~~~v~~l~~~g~~ 785 (932)
++.+++.+++++|+ .+++++|.-+...+..+.+.+|+.. +.+++. ..|+. =..+++.+......
T Consensus 84 ~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~ 160 (184)
T TIGR01993 84 KPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPER 160 (184)
T ss_pred CCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCccc
Confidence 46789999999998 4789999999999999999999852 233332 13322 23444555555678
Q ss_pred EEEEcCCcccHHHHHhCCeeE
Q 002354 786 VAMVGDGINDAAALASSHIGV 806 (932)
Q Consensus 786 v~~vGDg~ND~~al~~A~vgI 806 (932)
++||||...|+.+-+.+++-.
T Consensus 161 ~l~vgD~~~di~aA~~~G~~~ 181 (184)
T TIGR01993 161 AIFFDDSARNIAAAKALGMKT 181 (184)
T ss_pred eEEEeCCHHHHHHHHHcCCEE
Confidence 999999999999999988753
No 173
>PHA02597 30.2 hypothetical protein; Provisional
Probab=91.43 E-value=0.35 Score=49.84 Aligned_cols=91 Identities=18% Similarity=0.232 Sum_probs=57.2
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC------Cce-ecccChhhHHHHHHHH-hhCC-CEEEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK------DKV-LSGVKPNEKKRFINEL-QNDE-NVVAMV 789 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~------~~v-~~~~~p~~K~~~v~~l-~~~g-~~v~~v 789 (932)
++.|++.+++++|++.+ +.+++|.-+.......-+.+|+.. +.+ .++... -|.++++.. ++.| ..++||
T Consensus 74 ~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~~-~kp~~~~~a~~~~~~~~~v~v 151 (197)
T PHA02597 74 SAYDDALDVINKLKEDY-DFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHDE-SKEKLFIKAKEKYGDRVVCFV 151 (197)
T ss_pred cCCCCHHHHHHHHHhcC-CEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccCc-ccHHHHHHHHHHhCCCcEEEe
Confidence 36889999999999875 566677654444444556676641 112 222222 134444332 2223 468899
Q ss_pred cCCcccHHHHHhC--Cee-EEecCc
Q 002354 790 GDGINDAAALASS--HIG-VAMGGG 811 (932)
Q Consensus 790 GDg~ND~~al~~A--~vg-Ia~~~~ 811 (932)
||..+|+.+-++| ++- |.+..+
T Consensus 152 gDs~~di~aA~~a~~Gi~~i~~~~~ 176 (197)
T PHA02597 152 DDLAHNLDAAHEALSQLPVIHMLRG 176 (197)
T ss_pred CCCHHHHHHHHHHHcCCcEEEecch
Confidence 9999999999999 886 334344
No 174
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=91.38 E-value=0.49 Score=48.23 Aligned_cols=81 Identities=15% Similarity=0.170 Sum_probs=58.8
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Cceecc-------cChhhHHHHHHHHhhCCCEEEEEcCCcc
Q 002354 724 AAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKVLSG-------VKPNEKKRFINELQNDENVVAMVGDGIN 794 (932)
Q Consensus 724 ~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v~~~-------~~p~~K~~~v~~l~~~g~~v~~vGDg~N 794 (932)
..+.++.|++. ++..++|+.....+..+.+.+|+.. +.+++. -.|+-=....+.+.-....++||||..+
T Consensus 92 ~~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~igDs~~ 170 (188)
T PRK10725 92 LIEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVVFEDADF 170 (188)
T ss_pred HHHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEEEeccHh
Confidence 36889999875 8999999999999999999999852 223221 1122223334444434567899999999
Q ss_pred cHHHHHhCCee
Q 002354 795 DAAALASSHIG 805 (932)
Q Consensus 795 D~~al~~A~vg 805 (932)
|+.+-+.|++-
T Consensus 171 di~aA~~aG~~ 181 (188)
T PRK10725 171 GIQAARAAGMD 181 (188)
T ss_pred hHHHHHHCCCE
Confidence 99999999875
No 175
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=91.37 E-value=0.31 Score=51.23 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=62.3
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC---Cceecc-c----Ch--hhHHHHHHHHhhCCCEEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK---DKVLSG-V----KP--NEKKRFINELQNDENVVAM 788 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~---~~v~~~-~----~p--~~K~~~v~~l~~~g~~v~~ 788 (932)
++.|++.+.++.| ++++.++|+.+...+...-+..|+.. +.+++. - .| +-=....+.+.-....++|
T Consensus 88 ~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~ 164 (221)
T PRK10563 88 EPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCIL 164 (221)
T ss_pred CcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 4568999999988 48999999999888888888899852 123222 1 12 2113333344334467999
Q ss_pred EcCCcccHHHHHhCCeeEEe
Q 002354 789 VGDGINDAAALASSHIGVAM 808 (932)
Q Consensus 789 vGDg~ND~~al~~A~vgIa~ 808 (932)
|||..+|+.+-+.|++....
T Consensus 165 igDs~~di~aA~~aG~~~i~ 184 (221)
T PRK10563 165 VDDSSAGAQSGIAAGMEVFY 184 (221)
T ss_pred EeCcHhhHHHHHHCCCEEEE
Confidence 99999999999999988654
No 176
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=90.40 E-value=1.1 Score=53.05 Aligned_cols=85 Identities=18% Similarity=0.177 Sum_probs=62.3
Q ss_pred ccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHH-cCCCCCceec-------------c------cChhhHHHHHHHH
Q 002354 720 IRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASL-VGIPKDKVLS-------------G------VKPNEKKRFINEL 779 (932)
Q Consensus 720 lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~-~gi~~~~v~~-------------~------~~p~~K~~~v~~l 779 (932)
+++++.+.+ +++|.+ +++|+-...-++.+|++ +|++. +.+ + +.-++|.+-++..
T Consensus 111 l~~~a~~~~---~~~g~~-vvVSASp~~~Vepfa~~~LGid~--VIgTeLev~~~G~~TG~i~g~~~c~Ge~Kv~rl~~~ 184 (497)
T PLN02177 111 VHPETWRVF---NSFGKR-YIITASPRIMVEPFVKTFLGADK--VLGTELEVSKSGRATGFMKKPGVLVGDHKRDAVLKE 184 (497)
T ss_pred cCHHHHHHH---HhCCCE-EEEECCcHHHHHHHHHHcCCCCE--EEecccEECcCCEEeeeecCCCCCccHHHHHHHHHH
Confidence 677766644 567754 99999999999999987 89872 211 1 2335688877754
Q ss_pred hhCCCEEEEEcCCcccHHHHHhCCeeEEecC
Q 002354 780 QNDENVVAMVGDGINDAAALASSHIGVAMGG 810 (932)
Q Consensus 780 ~~~g~~v~~vGDg~ND~~al~~A~vgIa~~~ 810 (932)
........+.||..||.|||+.|+-..+++.
T Consensus 185 ~g~~~~~~aYgDS~sD~plL~~a~e~y~V~~ 215 (497)
T PLN02177 185 FGDALPDLGLGDRETDHDFMSICKEGYMVPR 215 (497)
T ss_pred hCCCCceEEEECCccHHHHHHhCCccEEeCC
Confidence 3222223789999999999999999999975
No 177
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=90.31 E-value=1.5 Score=47.42 Aligned_cols=79 Identities=23% Similarity=0.294 Sum_probs=54.5
Q ss_pred cccccHHHHHHHHHHHhCCCeEEEEcCCCHH----HHHHHHHHcCCCC-CceecccCh--------hhHHHHHHHHhhCC
Q 002354 717 EDRIRDDAAHVVNSLSSQGIGVYMLSGDKKN----SAEYVASLVGIPK-DKVLSGVKP--------NEKKRFINELQNDE 783 (932)
Q Consensus 717 ~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~----~a~~ia~~~gi~~-~~v~~~~~p--------~~K~~~v~~l~~~g 783 (932)
+.+.-|++.+..+.+++.|++|+++||+... |...+ ++.|++. +.++-|-.. +.|...-+++.++|
T Consensus 143 ~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL-~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~eG 221 (275)
T TIGR01680 143 EAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANL-KKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEG 221 (275)
T ss_pred cCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHH-HHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHHHcC
Confidence 3456789999999999999999999999864 33333 4578853 344444221 22444445556666
Q ss_pred C-EEEEEcCCcccH
Q 002354 784 N-VVAMVGDGINDA 796 (932)
Q Consensus 784 ~-~v~~vGDg~ND~ 796 (932)
+ +++.+||..+|.
T Consensus 222 YrIv~~iGDq~sDl 235 (275)
T TIGR01680 222 YNIVGIIGDQWNDL 235 (275)
T ss_pred ceEEEEECCCHHhc
Confidence 5 677799999996
No 178
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=88.92 E-value=1.3 Score=45.17 Aligned_cols=49 Identities=22% Similarity=0.348 Sum_probs=39.6
Q ss_pred EEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHH---HHHcCC
Q 002354 710 LAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYV---ASLVGI 758 (932)
Q Consensus 710 ~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~i---a~~~gi 758 (932)
+-|.+..+|..-|++.|++++|++++.+|..+|--..+.-+.+ -+++|+
T Consensus 14 lSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf 65 (262)
T KOG3040|consen 14 LSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGF 65 (262)
T ss_pred ccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCC
Confidence 5688999999999999999999999999999986555544444 445665
No 179
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=88.50 E-value=2.6 Score=41.77 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=66.3
Q ss_pred cccccHHHHHHHHHHHhCCCeEEEEcCCCHHHH---HHHHHHc-----CCCCCc---------------eecccChhhHH
Q 002354 717 EDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSA---EYVASLV-----GIPKDK---------------VLSGVKPNEKK 773 (932)
Q Consensus 717 ~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a---~~ia~~~-----gi~~~~---------------v~~~~~p~~K~ 773 (932)
.|..++++.+..+++++.|++++-+|+++..-+ +...++. +++.-. +..+-..+.|.
T Consensus 25 ~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~Gpv~~sP~~l~~al~rEvi~~~p~~fK~ 104 (157)
T PF08235_consen 25 KDWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPDGPVLLSPDSLFSALHREVISKDPEEFKI 104 (157)
T ss_pred chhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCCCCEEECCcchhhhhhccccccChHHHHH
Confidence 378999999999999999999999999986554 3344444 565432 22223346788
Q ss_pred HHHHHHhhC-----CCEEEEEcCCcccHHHHHhCCee
Q 002354 774 RFINELQND-----ENVVAMVGDGINDAAALASSHIG 805 (932)
Q Consensus 774 ~~v~~l~~~-----g~~v~~vGDg~ND~~al~~A~vg 805 (932)
..++.++.. ....+.+|+..+|+.+-+++++-
T Consensus 105 ~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip 141 (157)
T PF08235_consen 105 ACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP 141 (157)
T ss_pred HHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence 888888764 34577789999999999888764
No 180
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=86.90 E-value=1.8 Score=51.52 Aligned_cols=104 Identities=13% Similarity=0.221 Sum_probs=66.8
Q ss_pred CeEEEEEECCEEEEE----EEecc--c---ccHHHHHHHHHHHhCCCeEEEEcCCCH------------HHHHHHHHHcC
Q 002354 699 QSLVYVGVDNMLAGL----IYVED--R---IRDDAAHVVNSLSSQGIGVYMLSGDKK------------NSAEYVASLVG 757 (932)
Q Consensus 699 ~~~~~va~~~~~lG~----i~l~D--~---lr~~~~~~i~~L~~~Gi~v~~~TGd~~------------~~a~~ia~~~g 757 (932)
..++++..|++++-. ....| . +-|++.+.|+.|++.|++++|+|.-.. ..+..+.+++|
T Consensus 168 ~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lg 247 (526)
T TIGR01663 168 EKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLG 247 (526)
T ss_pred CcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcC
Confidence 357778888877632 11222 1 368999999999999999999997544 34788899999
Q ss_pred CCCCceecccC-hhhH--HHHHHH-HhhC-------CCEEEEEcCCcccHHHHHhC
Q 002354 758 IPKDKVLSGVK-PNEK--KRFINE-LQND-------ENVVAMVGDGINDAAALASS 802 (932)
Q Consensus 758 i~~~~v~~~~~-p~~K--~~~v~~-l~~~-------g~~v~~vGDg~ND~~al~~A 802 (932)
++-+.+++.-. .-.| ...+.. +++. .....||||...|..+-+.|
T Consensus 248 ipfdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaagr~~~g~~a 303 (526)
T TIGR01663 248 VPFQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAAGRPANGKAA 303 (526)
T ss_pred CceEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcccchHHHHhc
Confidence 97544433211 0011 122222 2222 24689999999998764443
No 181
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=86.66 E-value=1.4 Score=48.04 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=51.1
Q ss_pred CCeEEEEEECCEEEEEEEeccc--cc-HHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC
Q 002354 698 NQSLVYVGVDNMLAGLIYVEDR--IR-DDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK 760 (932)
Q Consensus 698 g~~~~~va~~~~~lG~i~l~D~--lr-~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~ 760 (932)
-..++++..|++++.- +.+ +| |++.+++++|+++|++++++|+.....+...-+++|++.
T Consensus 125 ~~kvIvFDLDgTLi~~---~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~ 187 (301)
T TIGR01684 125 PPHVVVFDLDSTLITD---EEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDR 187 (301)
T ss_pred cceEEEEecCCCCcCC---CCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCc
Confidence 3467888889988753 443 55 999999999999999999999999999999999999973
No 182
>PLN03138 Protein TOC75; Provisional
Probab=86.14 E-value=0.68 Score=56.95 Aligned_cols=14 Identities=14% Similarity=0.043 Sum_probs=8.1
Q ss_pred HHhcCCCeeEEEee
Q 002354 147 ILESQPQVSSASVN 160 (932)
Q Consensus 147 ~L~~~~GV~~~~Vn 160 (932)
-|+++.|-++..|+
T Consensus 138 ~~~~~~~~~~~~vs 151 (796)
T PLN03138 138 PLSKLSGFKRYKVS 151 (796)
T ss_pred echhcCCcceEEEE
Confidence 45666666555544
No 183
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=85.23 E-value=2.4 Score=44.83 Aligned_cols=91 Identities=18% Similarity=0.160 Sum_probs=71.1
Q ss_pred ccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC---ceecc------cChhhHHHHHHHHhhCCCEEEE
Q 002354 718 DRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD---KVLSG------VKPNEKKRFINELQNDENVVAM 788 (932)
Q Consensus 718 D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~---~v~~~------~~p~~K~~~v~~l~~~g~~v~~ 788 (932)
.++.|++.+.++.|+++|+.+.+.|+-+...+..+.+.+|+... .+.+. -.|+-=..-.+.|.-....++.
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~Cvv 164 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEECVV 164 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChHHeEE
Confidence 47889999999999999999999999999999999999998521 12221 2233334445555456778999
Q ss_pred EcCCcccHHHHHhCCeeEEe
Q 002354 789 VGDGINDAAALASSHIGVAM 808 (932)
Q Consensus 789 vGDg~ND~~al~~A~vgIa~ 808 (932)
|.|..|.+.|-++|+.-+-.
T Consensus 165 iEDs~~Gi~Aa~aAGm~vv~ 184 (221)
T COG0637 165 VEDSPAGIQAAKAAGMRVVG 184 (221)
T ss_pred EecchhHHHHHHHCCCEEEE
Confidence 99999999999999987543
No 184
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=84.64 E-value=2.4 Score=45.08 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=30.0
Q ss_pred EEECCEEEEEEEecc--cccHHHHHHHHHHHhCC-CeEEEEcCCCHHHHHHHHHHcCC
Q 002354 704 VGVDNMLAGLIYVED--RIRDDAAHVVNSLSSQG-IGVYMLSGDKKNSAEYVASLVGI 758 (932)
Q Consensus 704 va~~~~~lG~i~l~D--~lr~~~~~~i~~L~~~G-i~v~~~TGd~~~~a~~ia~~~gi 758 (932)
+.+||++..+..-.+ .+.+++.+++++|.+.. ..|+|+||++......+..--++
T Consensus 2 lDyDGTL~p~~~~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~~~~~~~i 59 (235)
T PF02358_consen 2 LDYDGTLAPIVDDPDAAVPPPELRELLRALAADPNNTVAIVSGRSLDDLERFGGIPNI 59 (235)
T ss_dssp EE-TTTSS---S-GGG----HHHHHHHHHHHHHSE--EEEE-SS-HHHHHHH-S-SS-
T ss_pred cccCCccCCCCCCccccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHHhcCCCCc
Confidence 456666665554333 45689999999998764 47999999999996555444443
No 185
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=83.80 E-value=1.7 Score=46.42 Aligned_cols=84 Identities=17% Similarity=0.257 Sum_probs=55.3
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Ccee-ccc----ChhhH--HHHHHHHhhCCCEEEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKVL-SGV----KPNEK--KRFINELQNDENVVAMV 789 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v~-~~~----~p~~K--~~~v~~l~~~g~~v~~v 789 (932)
++-|++.++++.|++. +++.++|..+.. .+..|+.. +.++ +.. .|.-. ....+.+.-....++||
T Consensus 113 ~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~V 186 (238)
T PRK10748 113 DVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILHV 186 (238)
T ss_pred CCCccHHHHHHHHHcC-CCEEEEECCCch-----HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEEEE
Confidence 4568999999999975 899999875544 25677742 1222 221 23211 22233343345679999
Q ss_pred cCC-cccHHHHHhCCeeEEe
Q 002354 790 GDG-INDAAALASSHIGVAM 808 (932)
Q Consensus 790 GDg-~ND~~al~~A~vgIa~ 808 (932)
||. ..|+.+-+.|++-...
T Consensus 187 GD~~~~Di~~A~~aG~~~i~ 206 (238)
T PRK10748 187 GDDLTTDVAGAIRCGMQACW 206 (238)
T ss_pred cCCcHHHHHHHHHCCCeEEE
Confidence 999 5999999999986544
No 186
>PRK13748 putative mercuric reductase; Provisional
Probab=83.00 E-value=3.6 Score=49.88 Aligned_cols=67 Identities=34% Similarity=0.510 Sum_probs=53.1
Q ss_pred EEEecCCCChhhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeCCCccccchhhhhhHHHHHHHHHhcCcccccccC
Q 002354 129 ILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAKVIPNWQRQLGEALAKHLTSCGFKSSLRDM 204 (932)
Q Consensus 129 ~l~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~~~~~~~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 204 (932)
.+.++||+|++|..+++..+...+++....+++..+...+.+++. ... +.+...+++.||...+...
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~-~~~--------~~i~~~i~~~g~~~~~~~~ 69 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVG-TSP--------DALTAAVAGLGYRATLADA 69 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCC-CCH--------HHHHHHHHHcCCeeeccCc
Confidence 466899999999999999999999999999999999988887542 222 4455667888998665444
No 187
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=81.91 E-value=9.7 Score=41.40 Aligned_cols=114 Identities=18% Similarity=0.262 Sum_probs=73.0
Q ss_pred eEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcC----CC--CCceecccChhhHH
Q 002354 700 SLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVG----IP--KDKVLSGVKPNEKK 773 (932)
Q Consensus 700 ~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~g----i~--~~~v~~~~~p~~K~ 773 (932)
..+.+..| |.+.-.++.=|++.++|++|+++|++++++|-.+..+...+++++. ++ .+.++ ++.+
T Consensus 9 ~~~l~DlD----Gvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~---TS~~-- 79 (269)
T COG0647 9 DGFLFDLD----GVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIV---TSGD-- 79 (269)
T ss_pred CEEEEcCc----CceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHee---cHHH--
Confidence 34444444 4555788999999999999999999999999887777665555443 21 11222 1111
Q ss_pred HHHHHHhhC--CCEEEEEcCCcccHHHHHhCCeeEEecCchHHHHhhcCEEEeCCC
Q 002354 774 RFINELQND--ENVVAMVGDGINDAAALASSHIGVAMGGGVGAASEVASVVLMGNR 827 (932)
Q Consensus 774 ~~v~~l~~~--g~~v~~vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl~~~~ 827 (932)
.....++++ +.+|.++|. ..+...|+.+++-+.-.... ...|+|+...|
T Consensus 80 at~~~l~~~~~~~kv~viG~-~~l~~~l~~~G~~~~~~~~~----~~~d~Vv~g~d 130 (269)
T COG0647 80 ATADYLAKQKPGKKVYVIGE-EGLKEELEGAGFELVDEEEP----ARVDAVVVGLD 130 (269)
T ss_pred HHHHHHHhhCCCCEEEEECC-cchHHHHHhCCcEEeccCCC----CcccEEEEecC
Confidence 122333332 368999995 56778899998877664221 11677777433
No 188
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=81.76 E-value=90 Score=34.55 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHhcCCCeeEEEe
Q 002354 138 GGCAASVKRILESQPQVSSASV 159 (932)
Q Consensus 138 ~~Ca~~Ie~~L~~~~GV~~~~V 159 (932)
..|...+++.+++.|||++++.
T Consensus 71 ~~~~~~v~~~i~~~~gV~~v~~ 92 (297)
T COG2177 71 QDDAALVREKIEGIPGVKSVRF 92 (297)
T ss_pred hHHHHHHHHHHhcCCCcceEEE
Confidence 8999999999999999988764
No 189
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=81.54 E-value=9.5 Score=27.40 Aligned_cols=42 Identities=40% Similarity=0.631 Sum_probs=35.2
Q ss_pred EecCCCChhhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeCC
Q 002354 131 DVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVS 172 (932)
Q Consensus 131 ~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~~ 172 (932)
.+.++.|..|...++..+...+++.....++......+.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (63)
T cd00371 3 SVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDP 44 (63)
T ss_pred eECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECC
Confidence 468999999999999999999998888888887776666643
No 190
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=80.60 E-value=3.8 Score=41.34 Aligned_cols=87 Identities=15% Similarity=0.256 Sum_probs=60.0
Q ss_pred ccHHHHHHHHHHHhCCCeEEEEc-CCCHHHHHHHHHHcCCC----------CCceecccChhhHHHHHHHHhhC----CC
Q 002354 720 IRDDAAHVVNSLSSQGIGVYMLS-GDKKNSAEYVASLVGIP----------KDKVLSGVKPNEKKRFINELQND----EN 784 (932)
Q Consensus 720 lr~~~~~~i~~L~~~Gi~v~~~T-Gd~~~~a~~ia~~~gi~----------~~~v~~~~~p~~K~~~v~~l~~~----g~ 784 (932)
+-|+++++++.|++.|+++.++| -+.+..|+++-+.++++ ..--+.+.-|..|....+.++++ -.
T Consensus 46 lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~Hf~~i~~~tgI~y~ 125 (169)
T PF12689_consen 46 LYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKTTHFRRIHRKTGIPYE 125 (169)
T ss_dssp --TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS-HHHHHHHHHHHH---GG
T ss_pred eCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecCchHHHHHHHHHhcCCChh
Confidence 46899999999999999999999 47889999999999998 22223456678999998888764 34
Q ss_pred EEEEEcCCcccHHHHHhCCeeEEe
Q 002354 785 VVAMVGDGINDAAALASSHIGVAM 808 (932)
Q Consensus 785 ~v~~vGDg~ND~~al~~A~vgIa~ 808 (932)
.++++=|-.......+. +||..
T Consensus 126 eMlFFDDe~~N~~~v~~--lGV~~ 147 (169)
T PF12689_consen 126 EMLFFDDESRNIEVVSK--LGVTC 147 (169)
T ss_dssp GEEEEES-HHHHHHHHT--TT-EE
T ss_pred HEEEecCchhcceeeEe--cCcEE
Confidence 68888887666666554 44433
No 191
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=80.03 E-value=4.7 Score=38.59 Aligned_cols=50 Identities=10% Similarity=0.028 Sum_probs=37.0
Q ss_pred EEEEEECCEEEEEE--E-ecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHH
Q 002354 701 LVYVGVDNMLAGLI--Y-VEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAE 750 (932)
Q Consensus 701 ~~~va~~~~~lG~i--~-l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~ 750 (932)
.+++..||+++--= . ..+++.+++.+++++|++.|++++++||++.....
T Consensus 3 ~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~ 55 (126)
T TIGR01689 3 RLVMDLDNTITLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYE 55 (126)
T ss_pred EEEEeCCCCcccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhh
Confidence 45566677764100 0 12568899999999999999999999999887543
No 192
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=79.92 E-value=3.9 Score=44.70 Aligned_cols=59 Identities=12% Similarity=0.129 Sum_probs=49.1
Q ss_pred CeEEEEEECCEEEEEEEecccc--c-HHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC
Q 002354 699 QSLVYVGVDNMLAGLIYVEDRI--R-DDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK 760 (932)
Q Consensus 699 ~~~~~va~~~~~lG~i~l~D~l--r-~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~ 760 (932)
..++++..|++++-- ++++ | |++.+++++|+++|+++.++|+.+...+..+.+.+|++.
T Consensus 128 ~~~i~~D~D~TL~~~---~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~ 189 (303)
T PHA03398 128 PHVIVFDLDSTLITD---EEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEG 189 (303)
T ss_pred ccEEEEecCCCccCC---CCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCc
Confidence 356777888887643 4444 5 999999999999999999999888888899999999963
No 193
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=79.55 E-value=7.3 Score=40.77 Aligned_cols=115 Identities=20% Similarity=0.215 Sum_probs=71.0
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC---ceecc----cChhhH--HHHHHHHhhCCCEEEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD---KVLSG----VKPNEK--KRFINELQNDENVVAMV 789 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~---~v~~~----~~p~~K--~~~v~~l~~~g~~v~~v 789 (932)
+.-+++.+++++|++. ++++++|--.........+++|+... .+.+. ..|+-+ ....+.+.-....++||
T Consensus 99 ~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~V 177 (229)
T COG1011 99 PDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALFV 177 (229)
T ss_pred ccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEEEE
Confidence 5678899999999999 99999997678888999999997421 12222 334322 22333333335679999
Q ss_pred cCC-cccHHHHHhCCee-EEecCch---HHHHhhcCEEEeCCChhHHHHHHH
Q 002354 790 GDG-INDAAALASSHIG-VAMGGGV---GAASEVASVVLMGNRLSQLLVALE 836 (932)
Q Consensus 790 GDg-~ND~~al~~A~vg-Ia~~~~~---~~a~~~ad~vl~~~~~~~i~~~i~ 836 (932)
||. .||+..-+.++.- |-+.... .......|+.+. ++..+..+++
T Consensus 178 gD~~~~di~gA~~~G~~~vwi~~~~~~~~~~~~~~~~~i~--~l~~l~~~~~ 227 (229)
T COG1011 178 GDSLENDILGARALGMKTVWINRGGKPLPDALEAPDYEIS--SLAELLDLLE 227 (229)
T ss_pred CCChhhhhHHHHhcCcEEEEECCCCCCCCCCccCCceEEc--CHHHHHHHHh
Confidence 996 6775666666654 4443211 111144555553 5666655543
No 194
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=77.81 E-value=2 Score=42.96 Aligned_cols=90 Identities=11% Similarity=0.125 Sum_probs=61.8
Q ss_pred ecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC---Cceecc-cChhhHHHHHHHHh---hCCCEEEE
Q 002354 716 VEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK---DKVLSG-VKPNEKKRFINELQ---NDENVVAM 788 (932)
Q Consensus 716 l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~---~~v~~~-~~p~~K~~~v~~l~---~~g~~v~~ 788 (932)
+.=..||++.+.+++|.+. +++++.|-.....|..+.+.++... +.++.+ -....|..+++.|. .....|+|
T Consensus 39 ~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~~~~~K~L~~l~~~~~~vIi 117 (162)
T TIGR02251 39 VYVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKVISRRLYRESCVFTNGKYVKDLSLVGKDLSKVII 117 (162)
T ss_pred EEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEEccccEEeCCCEEeEchhcCCChhhEEE
Confidence 3346799999999999988 9999999999999999999999753 122222 11111112344343 33467999
Q ss_pred EcCCcccHHHHHhCCeeE
Q 002354 789 VGDGINDAAALASSHIGV 806 (932)
Q Consensus 789 vGDg~ND~~al~~A~vgI 806 (932)
|||...|..+-..+++-|
T Consensus 118 VDD~~~~~~~~~~NgI~i 135 (162)
T TIGR02251 118 IDNSPYSYSLQPDNAIPI 135 (162)
T ss_pred EeCChhhhccCccCEeec
Confidence 999988876655554443
No 195
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=76.98 E-value=9.7 Score=40.68 Aligned_cols=116 Identities=18% Similarity=0.254 Sum_probs=68.7
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC--ceecc-----------------cChhhHHHH-H--
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKD--KVLSG-----------------VKPNEKKRF-I-- 776 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~--~v~~~-----------------~~p~~K~~~-v-- 776 (932)
.+|+++.+.++.|++.+|.+.+.|+.=-.....+-++-|...+ +|.++ .-+-.|-+- +
T Consensus 90 ~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~l~~ 169 (246)
T PF05822_consen 90 MLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESALED 169 (246)
T ss_dssp -B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHHHTT
T ss_pred hhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCcccccC
Confidence 4799999999999999999999999888888888888886433 12221 011223221 1
Q ss_pred -HHHhh--CCCEEEEEcCCcccHHHHHhC---CeeEEec--Cch-----HHHHhhcCEEEeCCChhHHHHH
Q 002354 777 -NELQN--DENVVAMVGDGINDAAALASS---HIGVAMG--GGV-----GAASEVASVVLMGNRLSQLLVA 834 (932)
Q Consensus 777 -~~l~~--~g~~v~~vGDg~ND~~al~~A---~vgIa~~--~~~-----~~a~~~ad~vl~~~~~~~i~~~ 834 (932)
...++ ....|+..||...|+.|-.-. +.-+.+| |.. +.-+++-|||+.+|.--.++..
T Consensus 170 ~~~~~~~~~R~NvlLlGDslgD~~Ma~G~~~~~~~lkIGFLn~~ve~~l~~Y~~~yDIVlv~D~tm~v~~~ 240 (246)
T PF05822_consen 170 SPYFKQLKKRTNVLLLGDSLGDLHMADGVPDEENVLKIGFLNDKVEENLEKYLEAYDIVLVDDQTMDVPNA 240 (246)
T ss_dssp HHHHHCTTT--EEEEEESSSGGGGTTTT-S--SEEEEEEEE-SSHHHHHHHHHCCSSEEEET--B-HHHHH
T ss_pred chHHHHhccCCcEEEecCccCChHhhcCCCccccEEEEEecccCHHHHHHHHHhcCCEEEECCCCchHHHH
Confidence 11111 245799999999999997655 4445555 322 2445678999998764444443
No 196
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=76.58 E-value=15 Score=39.02 Aligned_cols=84 Identities=18% Similarity=0.265 Sum_probs=53.7
Q ss_pred EecccccHHHHHHHHHHHhCCCeEEEEc---CCCHHHHHHHHHH-cCCC--CCceecccChhhHHHHHHHHhh--CCCEE
Q 002354 715 YVEDRIRDDAAHVVNSLSSQGIGVYMLS---GDKKNSAEYVASL-VGIP--KDKVLSGVKPNEKKRFINELQN--DENVV 786 (932)
Q Consensus 715 ~l~D~lr~~~~~~i~~L~~~Gi~v~~~T---Gd~~~~a~~ia~~-~gi~--~~~v~~~~~p~~K~~~v~~l~~--~g~~v 786 (932)
.-.+.+=+++.++|+.|+++|++++++| |++.........+ .|++ .++++ ++. ....+.+++ .+..|
T Consensus 10 ~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~ii---ts~--~~~~~~l~~~~~~~~v 84 (236)
T TIGR01460 10 WLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQII---TSG--SVTKDLLRQRFEGEKV 84 (236)
T ss_pred CcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHee---eHH--HHHHHHHHHhCCCCEE
Confidence 3456667799999999999999999998 6666655554444 7764 12222 111 112233332 35679
Q ss_pred EEEcCCcccHHHHHhCCe
Q 002354 787 AMVGDGINDAAALASSHI 804 (932)
Q Consensus 787 ~~vGDg~ND~~al~~A~v 804 (932)
..+|.. .....++.+++
T Consensus 85 ~v~G~~-~~~~~l~~~g~ 101 (236)
T TIGR01460 85 YVIGVG-ELRESLEGLGF 101 (236)
T ss_pred EEECCH-HHHHHHHHcCC
Confidence 999974 46667776654
No 197
>PLN02423 phosphomannomutase
Probab=75.70 E-value=4.1 Score=43.78 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=34.4
Q ss_pred hhHHHHHHHHhhCCCEEEEEcC----CcccHHHHHh-CCeeEEec
Q 002354 770 NEKKRFINELQNDENVVAMVGD----GINDAAALAS-SHIGVAMG 809 (932)
Q Consensus 770 ~~K~~~v~~l~~~g~~v~~vGD----g~ND~~al~~-A~vgIa~~ 809 (932)
-+|..-++.|+ ....|+++|| |.||.+||+. --.+|.+.
T Consensus 188 vnKg~al~~L~-~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~ 231 (245)
T PLN02423 188 WDKTYCLQFLE-DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVT 231 (245)
T ss_pred CCHHHHHHHhc-CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeC
Confidence 46999999999 7889999999 8999999997 66788885
No 198
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=75.36 E-value=3.7 Score=40.91 Aligned_cols=88 Identities=18% Similarity=0.308 Sum_probs=62.1
Q ss_pred ccHHHHHHHHHHHhCCCeEEEEcCCCHH----HHHHHHHHcCCCC--CceecccCh-hhHHHHHHHHhhCCCEEEEEcCC
Q 002354 720 IRDDAAHVVNSLSSQGIGVYMLSGDKKN----SAEYVASLVGIPK--DKVLSGVKP-NEKKRFINELQNDENVVAMVGDG 792 (932)
Q Consensus 720 lr~~~~~~i~~L~~~Gi~v~~~TGd~~~----~a~~ia~~~gi~~--~~v~~~~~p-~~K~~~v~~l~~~g~~v~~vGDg 792 (932)
+++-+++.|+.=++.|=.++.+||+... ++..+|+...|.. ...|++-.| -.+..-...+|+++ .-..-||.
T Consensus 115 PKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk~k~~qy~Kt~~i~~~~-~~IhYGDS 193 (237)
T COG3700 115 PKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGDKPKPGQYTKTQWIQDKN-IRIHYGDS 193 (237)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccCCCCcccccccHHHHhcC-ceEEecCC
Confidence 4666788888888999999999999765 4566777777743 245665555 12233445566665 45678999
Q ss_pred cccHHHHHhCCe-eEEe
Q 002354 793 INDAAALASSHI-GVAM 808 (932)
Q Consensus 793 ~ND~~al~~A~v-gIa~ 808 (932)
.||+-|-+.|++ ||-+
T Consensus 194 D~Di~AAkeaG~RgIRi 210 (237)
T COG3700 194 DNDITAAKEAGARGIRI 210 (237)
T ss_pred chhhhHHHhcCccceeE
Confidence 999999999886 4544
No 199
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=75.18 E-value=99 Score=39.23 Aligned_cols=208 Identities=12% Similarity=0.114 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhccCCCeEEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeeeEEEEeee----
Q 002354 334 AFVLLGKNLEQRAKIKATSDMTGLLGILPSKARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAGR---- 409 (932)
Q Consensus 334 ~~~llg~~le~~~~~ka~~~l~~L~~~~p~~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll~G~---- 409 (932)
.++++..+---.+.++.++.-+++.++ +.. ..++.=++.|-...|..-|.||-|..++...
T Consensus 219 cI~iisv~Si~~sv~e~r~qs~rlr~m-------v~~--------~~~V~V~R~g~~~ti~S~eLVPGDil~i~~~~~~~ 283 (1140)
T KOG0208|consen 219 CIVIISVYSIVLSVYETRKQSIRLRSM-------VKF--------TCPVTVIRDGFWETVDSSELVPGDILYIPPPGKIM 283 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcC--------CceEEEEECCEEEEEeccccccccEEEECCCCeEe
Confidence 344455555555667777766666554 222 2455557789999999999999999999762
Q ss_pred ----eEEeccccccCCCceeecCCCcccc-------ce----------------eeecCcEEEEEEecCCcchHHHHHHH
Q 002354 410 ----STVDESSFTGEPLPVTKIPESEVAA-------GS----------------INLNGTLTVEVRRPGGETAMGDIVRL 462 (932)
Q Consensus 410 ----~~VDES~LTGES~Pv~K~~g~~V~a-------Gt----------------~v~~G~~~~~V~~tG~~T~~gki~~~ 462 (932)
..++-+.++-||+.- |+.|.. |+ .+..|+-..++...+....++..+|.
T Consensus 284 PcDa~Li~g~civNEsmLT----GESVPv~K~~l~~~~~~~~~~~~~~~~~~rh~lfcGT~vlq~r~~~g~~v~a~V~RT 359 (1140)
T KOG0208|consen 284 PCDALLISGDCIVNESMLT----GESVPVTKTPLPMGTDSLDSITISMSTNSRHTLFCGTKVLQARAYLGGPVLAMVLRT 359 (1140)
T ss_pred ecceEEEeCcEEeeccccc----CCcccccccCCccccccCcCeeechhhcCcceeeccceEEEeecCCCCceEEEEEec
Confidence 356777777787653 665432 21 12347666666666666555444332
Q ss_pred HHHhhcCCChHHHHH-------HHHHhhHHHHHHHHHHHHHHHHHhhccCcccchhccCCcHHHHHHHHHHHHHHHhhh-
Q 002354 463 VEEAQSREAPVQRLA-------DQVSGHFTYGVIALSAATFVFWNLFGAHVLPTAIQYGGPVSLALQLSCSVLVVACPC- 534 (932)
Q Consensus 463 v~~a~~~~~~lq~~~-------d~~~~~~~~~vl~la~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ai~vLvva~P~- 534 (932)
--. ..|..+-|.+ .++-+--..+++.++++.++.. +..++.+.....|.
T Consensus 360 GF~--T~KGqLVRsilyPkP~~fkfyrds~~fi~~l~~ia~~gf---------------------iy~~i~l~~~g~~~~ 416 (1140)
T KOG0208|consen 360 GFS--TTKGQLVRSILYPKPVNFKFYRDSFKFILFLVIIALIGF---------------------IYTAIVLNLLGVPLK 416 (1140)
T ss_pred ccc--ccccHHHHhhcCCCCcccHHHHHHHHHHHHHHHHHHHHH---------------------HHHhHhHHHcCCCHH
Confidence 111 1122222111 1222223344444444433321 11122222222332
Q ss_pred ------------cchhhHHHHHHHHHHHhhhcCccccCchHHHhcccccEEEecCCCCcccCceEEEEEEecC
Q 002354 535 ------------ALGLATPTAMLVGTSLGATRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVTKVVTSG 595 (932)
Q Consensus 535 ------------aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~I~fDKTGTLT~g~~~v~~i~~~~ 595 (932)
-.+-|+|.++.+|+..+.+ +|.+-...|.--+--=..|+..+.-+.-.+
T Consensus 417 ~iiirsLDliTi~VPPALPAaltvG~~~a~~------------RLkkk~IfCisP~rIn~~G~i~~~cFDKTG 477 (1140)
T KOG0208|consen 417 TIIIRSLDLITIVVPPALPAALTVGIIYAQS------------RLKKKGIFCISPQRINLCGKLNLVCFDKTG 477 (1140)
T ss_pred HHhhhhhcEEEEecCCCchhhhhHHHHHHHH------------HHHhcCeEEcCccceeecceeeEEEEcCCC
Confidence 2344778888888877654 466777888877766667777776554433
No 200
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=74.44 E-value=12 Score=41.51 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=37.8
Q ss_pred EEEEEecCCCChhhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeC
Q 002354 127 VIILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPV 171 (932)
Q Consensus 127 ~~~l~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~ 171 (932)
...++|.|.+=..-...+-++|+.-.-|..+.+-+..+++.|+++
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefe 75 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFE 75 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeec
Confidence 356778888777777778889999999999999999999999886
No 201
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=73.24 E-value=2.8 Score=42.08 Aligned_cols=76 Identities=20% Similarity=0.190 Sum_probs=52.1
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Cce-eccc----ChhhH--HHHHHHHhhCCCEEEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKV-LSGV----KPNEK--KRFINELQNDENVVAMV 789 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v-~~~~----~p~~K--~~~v~~l~~~g~~v~~v 789 (932)
++.|++.++++ ++.++|.-+......+.+.+|+.. +.+ .++. .|+-. ....+.+.-....++||
T Consensus 90 ~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~v 162 (175)
T TIGR01493 90 PPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLMV 162 (175)
T ss_pred CCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEeE
Confidence 46788888888 367999988888888999999852 112 2221 22221 34444454455779999
Q ss_pred cCCcccHHHHHh
Q 002354 790 GDGINDAAALAS 801 (932)
Q Consensus 790 GDg~ND~~al~~ 801 (932)
||...|+.+-++
T Consensus 163 gD~~~Di~~A~~ 174 (175)
T TIGR01493 163 AAHQWDLIGARK 174 (175)
T ss_pred ecChhhHHHHhc
Confidence 999999887654
No 202
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=72.57 E-value=5.6 Score=40.16 Aligned_cols=40 Identities=18% Similarity=0.134 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHhcCCCeeEEEeecCCcE-------------------EEEEeCCCcccc
Q 002354 138 GGCAASVKRILESQPQVSSASVNLTTET-------------------AIVWPVSKAKVI 177 (932)
Q Consensus 138 ~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~-------------------~~V~~~~~~~~~ 177 (932)
++|=|.+|..+.+++||.++.|=++.+. +.|.|||..++.
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy 68 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISY 68 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCH
Confidence 5899999999999999999999887765 889999999886
No 203
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=70.97 E-value=15 Score=41.47 Aligned_cols=37 Identities=11% Similarity=0.263 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHc-C
Q 002354 721 RDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLV-G 757 (932)
Q Consensus 721 r~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~-g 757 (932)
.|++.+.+++|+++|+++.++|.-+...+..+.+.+ |
T Consensus 186 ~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g 223 (343)
T TIGR02244 186 DPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLG 223 (343)
T ss_pred chhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhC
Confidence 679999999999999999999999999999999996 6
No 204
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=69.92 E-value=19 Score=36.74 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=57.5
Q ss_pred ccHHHHHHHHHHHhCCCeEEEEcC-----CCHHHH----------HHHHHHcCCCCC-ceecccChhh--------HHHH
Q 002354 720 IRDDAAHVVNSLSSQGIGVYMLSG-----DKKNSA----------EYVASLVGIPKD-KVLSGVKPNE--------KKRF 775 (932)
Q Consensus 720 lr~~~~~~i~~L~~~Gi~v~~~TG-----d~~~~a----------~~ia~~~gi~~~-~v~~~~~p~~--------K~~~ 775 (932)
+.+++.+++..|+++|++++|+|- +...+. ...-++.|+.-+ ..+|.-.|++ ..-+
T Consensus 32 ~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~gm~ 111 (181)
T COG0241 32 FIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPGML 111 (181)
T ss_pred cCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChHHH
Confidence 578999999999999999999993 222222 223334443222 3444444443 2334
Q ss_pred HHHHhhC---CCEEEEEcCCcccHHHHHhCCeeEEe
Q 002354 776 INELQND---ENVVAMVGDGINDAAALASSHIGVAM 808 (932)
Q Consensus 776 v~~l~~~---g~~v~~vGDg~ND~~al~~A~vgIa~ 808 (932)
.+.+++. -....||||-..|..+-..+++. .+
T Consensus 112 ~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~-~~ 146 (181)
T COG0241 112 LSALKEYNIDLSRSYVVGDRLTDLQAAENAGIK-GV 146 (181)
T ss_pred HHHHHHhCCCccceEEecCcHHHHHHHHHCCCC-ce
Confidence 4444443 36789999999999999999887 44
No 205
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=69.38 E-value=25 Score=38.19 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=50.6
Q ss_pred hCCCeEEEEEECCEEEEEEEec--ccccHHHHHHHHHHHhC-CCeEEEEcCCCHHHHHHHHHHcCC
Q 002354 696 LMNQSLVYVGVDNMLAGLIYVE--DRIRDDAAHVVNSLSSQ-GIGVYMLSGDKKNSAEYVASLVGI 758 (932)
Q Consensus 696 ~~g~~~~~va~~~~~lG~i~l~--D~lr~~~~~~i~~L~~~-Gi~v~~~TGd~~~~a~~ia~~~gi 758 (932)
....+.+++.+||++.-++... ..+-++..+++++|... ...++|+||++...........||
T Consensus 15 ~a~~~~~~lDyDGTl~~i~~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~v~~i 80 (266)
T COG1877 15 NARKRLLFLDYDGTLTEIVPHPEAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFGVPGI 80 (266)
T ss_pred cccceEEEEeccccccccccCccccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcCCCCc
Confidence 3466888999999988775544 46778899999999988 446999999999999888875554
No 206
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=68.49 E-value=64 Score=35.51 Aligned_cols=91 Identities=23% Similarity=0.392 Sum_probs=60.9
Q ss_pred hCCCeEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecccChh----h
Q 002354 696 LMNQSLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGVKPN----E 771 (932)
Q Consensus 696 ~~g~~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~~~p~----~ 771 (932)
..|...+|+.-+..-+| +.+.-.|+..++.+. +..+++-+....+...+|+..+++ |+..++.+ |
T Consensus 68 qlGg~~~~l~~~~~Qlg----r~Esi~DTArVLsr~----~D~I~~R~~~~~~ve~lA~~s~VP---ViNgLtD~~HP~Q 136 (310)
T COG0078 68 QLGGHAIYLGPGDSQLG----RGESIKDTARVLSRM----VDAIMIRGFSHETLEELAKYSGVP---VINGLTDEFHPCQ 136 (310)
T ss_pred HcCCCeEEeCCCccccC----CCCcHHHHHHHHHhh----hheEEEecccHHHHHHHHHhCCCc---eEcccccccCcHH
Confidence 35777888877766666 344444555555444 556899999999999999999997 66666543 3
Q ss_pred HHHHHHHHhh-----CCCEEEEEcCCcccHH
Q 002354 772 KKRFINELQN-----DENVVAMVGDGINDAA 797 (932)
Q Consensus 772 K~~~v~~l~~-----~g~~v~~vGDg~ND~~ 797 (932)
-+.=+..+++ +|.+++++|||.|=+-
T Consensus 137 ~LADl~Ti~E~~g~l~g~k~a~vGDgNNv~n 167 (310)
T COG0078 137 ALADLMTIKEHFGSLKGLKLAYVGDGNNVAN 167 (310)
T ss_pred HHHHHHHHHHhcCcccCcEEEEEcCcchHHH
Confidence 3222222222 4689999999966444
No 207
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=66.80 E-value=20 Score=37.96 Aligned_cols=82 Identities=20% Similarity=0.270 Sum_probs=53.1
Q ss_pred ccHHHHHHHHHHHhCCCeEEEEcCCCHHH----HHHHHHHcCCCCC---ceecccChhhHHHHHHHHhhCCCEEEEEcCC
Q 002354 720 IRDDAAHVVNSLSSQGIGVYMLSGDKKNS----AEYVASLVGIPKD---KVLSGVKPNEKKRFINELQNDENVVAMVGDG 792 (932)
Q Consensus 720 lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~----a~~ia~~~gi~~~---~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg 792 (932)
.-|++.|-++..-+.|.+|..+|-+.... ...=.++.|++.. ++.-.-....|..--+..++.-..|+.|||.
T Consensus 123 ~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llkk~~k~Ke~R~~~v~k~~~iVm~vGDN 202 (274)
T COG2503 123 AVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLKKDKKSKEVRRQAVEKDYKIVMLVGDN 202 (274)
T ss_pred cCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEeeCCCcHHHHHHHHhhccceeeEecCc
Confidence 45788888999999999999998776655 3445566777531 2222212223444444455556789999999
Q ss_pred cccHHHHHh
Q 002354 793 INDAAALAS 801 (932)
Q Consensus 793 ~ND~~al~~ 801 (932)
.+|-.....
T Consensus 203 l~DF~d~~~ 211 (274)
T COG2503 203 LDDFGDNAY 211 (274)
T ss_pred hhhhcchhh
Confidence 999755443
No 208
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=65.97 E-value=14 Score=31.03 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=40.5
Q ss_pred EEEEecCCCChhhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeCCCccccchhhhhhHHHHHHHHHhcCcccc
Q 002354 128 IILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAKVIPNWQRQLGEALAKHLTSCGFKSS 200 (932)
Q Consensus 128 ~~l~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~~~~~~~~~~~~~~~~~i~~~i~~~Gy~~~ 200 (932)
+++++.|+.|+...-.+.++|++++.= +.+.|..|..... +.+.+..++.||+..
T Consensus 1 ~~lD~rg~~CP~Pll~~~~~l~~l~~G---------~~l~v~~d~~~~~---------~di~~~~~~~g~~~~ 55 (70)
T PF01206_consen 1 KTLDLRGLSCPMPLLKAKKALKELPPG---------EVLEVLVDDPAAV---------EDIPRWCEENGYEVV 55 (70)
T ss_dssp EEEECSS-STTHHHHHHHHHHHTSGTT----------EEEEEESSTTHH---------HHHHHHHHHHTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHHHhcCCC---------CEEEEEECCccHH---------HHHHHHHHHCCCEEE
Confidence 368999999999999999999997442 3345555544322 679999999999844
No 209
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=65.77 E-value=31 Score=38.61 Aligned_cols=88 Identities=17% Similarity=0.279 Sum_probs=56.7
Q ss_pred EEEEecccccHHHHHHHHHHHhC----CCeEEEEcCCC---HHH-HHHHHHHcCCCCC--ceecccChhhHHHHHHHHhh
Q 002354 712 GLIYVEDRIRDDAAHVVNSLSSQ----GIGVYMLSGDK---KNS-AEYVASLVGIPKD--KVLSGVKPNEKKRFINELQN 781 (932)
Q Consensus 712 G~i~l~D~lr~~~~~~i~~L~~~----Gi~v~~~TGd~---~~~-a~~ia~~~gi~~~--~v~~~~~p~~K~~~v~~l~~ 781 (932)
|.+.-.+++-+++.++++.|++. |+++..+|-.. ... +..+.+++|++.+ +++... ......+++
T Consensus 9 GvL~~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~-----~~~~~ll~~ 83 (321)
T TIGR01456 9 GVLFRGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQVIQSH-----SPYKSLVNK 83 (321)
T ss_pred CceECCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhh-----HHHHHHHHH
Confidence 44456788899999999999998 99999999554 443 5666688888521 222221 122223333
Q ss_pred CCCEEEEEcCCcccHHHHHhCCee
Q 002354 782 DENVVAMVGDGINDAAALASSHIG 805 (932)
Q Consensus 782 ~g~~v~~vGDg~ND~~al~~A~vg 805 (932)
.+..++++|.+. -...++.+++-
T Consensus 84 ~~~~v~viG~~~-~~~~l~~~G~~ 106 (321)
T TIGR01456 84 YEKRILAVGTGS-VRGVAEGYGFQ 106 (321)
T ss_pred cCCceEEEeChH-HHHHHHHcCCc
Confidence 334688999864 45666655543
No 210
>PLN03138 Protein TOC75; Provisional
Probab=64.08 E-value=11 Score=46.92 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=8.4
Q ss_pred HHHHHHHHhcCccc
Q 002354 186 EALAKHLTSCGFKS 199 (932)
Q Consensus 186 ~~i~~~i~~~Gy~~ 199 (932)
++..++|.+.||-.
T Consensus 188 q~dv~~I~~tG~F~ 201 (796)
T PLN03138 188 QKELETLASCGMFE 201 (796)
T ss_pred HHHHHHHHhcCCce
Confidence 34455666788743
No 211
>KOG4383 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.98 E-value=73 Score=38.37 Aligned_cols=34 Identities=26% Similarity=0.268 Sum_probs=31.1
Q ss_pred CcEEEEeCCCccCCCEEEEcCCCEEeeeEEEEee
Q 002354 375 DSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAG 408 (932)
Q Consensus 375 g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll~G 408 (932)
|...++|..-||.||||-++||+.-||.+.=.++
T Consensus 164 Ghlm~lP~~LLVeGDiIa~RPGQeafan~~g~~d 197 (1354)
T KOG4383|consen 164 GHLMELPRILLVEGDIIAFRPGQEAFANCEGFDD 197 (1354)
T ss_pred CeeeecceeEEEeccEEEecCCccccccccccCC
Confidence 7899999999999999999999999998876665
No 212
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=63.24 E-value=13 Score=37.03 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHhcCCCeeEEEeecCCc--------------EEEEEeCCCcccc
Q 002354 138 GGCAASVKRILESQPQVSSASVNLTTE--------------TAIVWPVSKAKVI 177 (932)
Q Consensus 138 ~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~--------------~~~V~~~~~~~~~ 177 (932)
++|=|-+|..+.+++||.+++|=++.+ .+.|.|||..++.
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy 61 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSI 61 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCH
Confidence 589999999999999999999866543 3788999999886
No 213
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=61.37 E-value=11 Score=39.18 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=35.0
Q ss_pred hhhHHHHHHHHhcCCCeeEEEeecCC-------------------cEEEEEeCCCcccc
Q 002354 138 GGCAASVKRILESQPQVSSASVNLTT-------------------ETAIVWPVSKAKVI 177 (932)
Q Consensus 138 ~~Ca~~Ie~~L~~~~GV~~~~Vn~~~-------------------~~~~V~~~~~~~~~ 177 (932)
++|=|-+|..+.+++||.+++|=++. +.+.|.||+..++.
T Consensus 52 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy 110 (213)
T PRK00058 52 MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISY 110 (213)
T ss_pred ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCH
Confidence 58999999999999999999998873 34789999998886
No 214
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.19 E-value=71 Score=35.40 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=35.7
Q ss_pred ccChhhHHHHHHHHhh--CCCEEEEEcCC-cccHH---HHHhCCeeEEecC----chHHHHhhcCEEEeC
Q 002354 766 GVKPNEKKRFINELQN--DENVVAMVGDG-INDAA---ALASSHIGVAMGG----GVGAASEVASVVLMG 825 (932)
Q Consensus 766 ~~~p~~K~~~v~~l~~--~g~~v~~vGDg-~ND~~---al~~A~vgIa~~~----~~~~a~~~ad~vl~~ 825 (932)
-++|..=.++++.+.- .|..|+++|-| .-=.| +|..++..+.+-+ ....+...||+|+.-
T Consensus 140 PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIsa 209 (301)
T PRK14194 140 PCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVAA 209 (301)
T ss_pred CCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHhcCCEEEEe
Confidence 3455544555554432 48899999997 44433 4556666666641 223344678988773
No 215
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=57.97 E-value=12 Score=38.31 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHhcCCCeeEEEeecCCcE-------------------EEEEeCCCcccc
Q 002354 138 GGCAASVKRILESQPQVSSASVNLTTET-------------------AIVWPVSKAKVI 177 (932)
Q Consensus 138 ~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~-------------------~~V~~~~~~~~~ 177 (932)
++|=|-+|....+++||.+++|=++.+. +.|.|||..++.
T Consensus 15 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy 73 (186)
T PRK13014 15 GGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSY 73 (186)
T ss_pred cCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCH
Confidence 5889999999999999999999887664 789999998886
No 216
>PLN02423 phosphomannomutase
Probab=56.22 E-value=20 Score=38.37 Aligned_cols=48 Identities=13% Similarity=0.194 Sum_probs=38.1
Q ss_pred eEEEEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHH
Q 002354 700 SLVYVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEY 751 (932)
Q Consensus 700 ~~~~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ 751 (932)
.++++..||+++- =..++.+.+.++|++|++. ++++++||+.......
T Consensus 8 ~i~~~D~DGTLl~---~~~~i~~~~~~ai~~l~~~-i~fviaTGR~~~~~~~ 55 (245)
T PLN02423 8 VIALFDVDGTLTA---PRKEATPEMLEFMKELRKV-VTVGVVGGSDLSKISE 55 (245)
T ss_pred eEEEEeccCCCcC---CCCcCCHHHHHHHHHHHhC-CEEEEECCcCHHHHHH
Confidence 3455778998872 2446899999999999987 9999999997776643
No 217
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=55.64 E-value=8.4 Score=47.51 Aligned_cols=6 Identities=17% Similarity=-0.263 Sum_probs=2.6
Q ss_pred ccc-ccc
Q 002354 41 IST-QTL 46 (932)
Q Consensus 41 ~~~-~~~ 46 (932)
+|. ||=
T Consensus 1179 ~SgyRRG 1185 (1282)
T KOG0921|consen 1179 NSGYRRG 1185 (1282)
T ss_pred ccccccC
Confidence 344 443
No 218
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=55.16 E-value=53 Score=29.05 Aligned_cols=31 Identities=10% Similarity=0.159 Sum_probs=12.1
Q ss_pred HHHHHhhhccCCCeEEEEEecCCCCcEEEEe
Q 002354 351 TSDMTGLLGILPSKARLLVDNDAKDSIIEVP 381 (932)
Q Consensus 351 ~~~l~~L~~~~p~~~~vir~~~~~g~~~~V~ 381 (932)
.+..+++.+.+..--+|+-.+|--|+..++.
T Consensus 28 ~k~~~~m~~~L~~Gd~VvT~gGi~G~V~~i~ 58 (84)
T TIGR00739 28 RKAHKKLIESLKKGDKVLTIGGIIGTVTKIA 58 (84)
T ss_pred HHHHHHHHHhCCCCCEEEECCCeEEEEEEEe
Confidence 3333344333333334444433333444443
No 219
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=53.15 E-value=46 Score=33.63 Aligned_cols=107 Identities=16% Similarity=0.140 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCCHH-HHHHHHHHcCCCCCceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHHHH
Q 002354 722 DDAAHVVNSLSSQGIGVYMLSGDKKN-SAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALA 800 (932)
Q Consensus 722 ~~~~~~i~~L~~~Gi~v~~~TGd~~~-~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~ 800 (932)
.|..+++.++++.+-++.+++=++.. ....+.+.+|++- ..+.--++++-...++.++++|. -+.+|++.-
T Consensus 64 ~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i-~~~~~~~~~e~~~~i~~~~~~G~-~viVGg~~~------ 135 (176)
T PF06506_consen 64 FDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDI-KIYPYDSEEEIEAAIKQAKAEGV-DVIVGGGVV------ 135 (176)
T ss_dssp HHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EE-EEEEESSHHHHHHHHHHHHHTT---EEEESHHH------
T ss_pred hHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCce-EEEEECCHHHHHHHHHHHHHcCC-cEEECCHHH------
Confidence 46677777777777778777655544 3788888888852 34445678888899999999984 456777531
Q ss_pred hCCeeEEecCchHHHHh-hcCEEEeCCChhHHHHHHHHHHHHHHHHHH
Q 002354 801 SSHIGVAMGGGVGAASE-VASVVLMGNRLSQLLVALELSRLTMKTVKQ 847 (932)
Q Consensus 801 ~A~vgIa~~~~~~~a~~-~ad~vl~~~~~~~i~~~i~~gR~~~~~i~~ 847 (932)
.+.|++ --..++...+.+.+..+++.++++.+..++
T Consensus 136 -----------~~~A~~~gl~~v~i~sg~esi~~Al~eA~~i~~~~~~ 172 (176)
T PF06506_consen 136 -----------CRLARKLGLPGVLIESGEESIRRALEEALRIARARRR 172 (176)
T ss_dssp -----------HHHHHHTTSEEEESS--HHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHcCCcEEEEEecHHHHHHHHHHHHHHHHHHHH
Confidence 122222 345677777899999999999999988775
No 220
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=52.78 E-value=17 Score=38.82 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC----------CCce-ecccChhhHHHHHHHHhhC-CCEEEE
Q 002354 721 RDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIP----------KDKV-LSGVKPNEKKRFINELQND-ENVVAM 788 (932)
Q Consensus 721 r~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~----------~~~v-~~~~~p~~K~~~v~~l~~~-g~~v~~ 788 (932)
-++..++++.|++.|++. ++|......+.......|.. .+.+ +..-.|+-=....+.+... ...++|
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~~ 218 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRMLM 218 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEEE
Confidence 478899999999999997 66765444332222222221 0011 2222222223344444322 347999
Q ss_pred EcCC-cccHHHHHhCCeeE
Q 002354 789 VGDG-INDAAALASSHIGV 806 (932)
Q Consensus 789 vGDg-~ND~~al~~A~vgI 806 (932)
|||. .+|+.+=+.|++-.
T Consensus 219 vGD~~~~Di~~a~~~G~~~ 237 (242)
T TIGR01459 219 VGDSFYTDILGANRLGIDT 237 (242)
T ss_pred ECCCcHHHHHHHHHCCCeE
Confidence 9999 59999998888753
No 221
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=51.23 E-value=2.2e+02 Score=26.97 Aligned_cols=86 Identities=13% Similarity=0.202 Sum_probs=53.4
Q ss_pred EecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecccChhhHHHHHHHHhhCCCEEEEEcCCcc
Q 002354 715 YVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDGIN 794 (932)
Q Consensus 715 ~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~N 794 (932)
.+-+++.++..+.+++ |+.+.+.............+.+. -++....+.-..++++.+. +-+.|...|-|.|
T Consensus 2 li~~~~~~~~~~~l~~----~~~v~~~~~~~~~~~~~~l~~~d----~ii~~~~~~~~~~~l~~~~-~Lk~I~~~~~G~d 72 (133)
T PF00389_consen 2 LITDPLPDEEIERLEE----GFEVEFCDSPSEEELAERLKDAD----AIIVGSGTPLTAEVLEAAP-NLKLISTAGAGVD 72 (133)
T ss_dssp EESSS-SHHHHHHHHH----TSEEEEESSSSHHHHHHHHTTES----EEEESTTSTBSHHHHHHHT-T-SEEEESSSSCT
T ss_pred EEeccCCHHHHHHHHC----CceEEEeCCCCHHHHHHHhCCCe----EEEEcCCCCcCHHHHhccc-eeEEEEEcccccC
Confidence 4567777777776666 88888887555554444444332 3555444422345666663 3457888899988
Q ss_pred --cHHHHHhCCeeEEec
Q 002354 795 --DAAALASSHIGVAMG 809 (932)
Q Consensus 795 --D~~al~~A~vgIa~~ 809 (932)
|.++++.-++-++-.
T Consensus 73 ~id~~~a~~~gI~V~n~ 89 (133)
T PF00389_consen 73 NIDLEAAKERGIPVTNV 89 (133)
T ss_dssp TB-HHHHHHTTSEEEE-
T ss_pred cccHHHHhhCeEEEEEe
Confidence 788888888888774
No 222
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=49.66 E-value=29 Score=34.53 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHhcCCCeeEEEeecCCc-------------------EEEEEeCCCcccc
Q 002354 138 GGCAASVKRILESQPQVSSASVNLTTE-------------------TAIVWPVSKAKVI 177 (932)
Q Consensus 138 ~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~-------------------~~~V~~~~~~~~~ 177 (932)
++|=|.+|..+.+++||.++.|=++.+ .+.|.||+..++.
T Consensus 7 ~GCFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~ 65 (155)
T PF01625_consen 7 GGCFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISY 65 (155)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-H
T ss_pred cCCCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccH
Confidence 589999999999999999999977655 4688999998876
No 223
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=49.10 E-value=27 Score=34.41 Aligned_cols=40 Identities=30% Similarity=0.276 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHhcCCCeeEEEeecCC-------------------cEEEEEeCCCcccc
Q 002354 138 GGCAASVKRILESQPQVSSASVNLTT-------------------ETAIVWPVSKAKVI 177 (932)
Q Consensus 138 ~~Ca~~Ie~~L~~~~GV~~~~Vn~~~-------------------~~~~V~~~~~~~~~ 177 (932)
++|=|-+|....+++||.++++=++. +.+.|.|||..++.
T Consensus 7 gGCFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is~ 65 (149)
T TIGR00401 7 GGCFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVISY 65 (149)
T ss_pred cCCchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCcH
Confidence 48999999999999999999875543 34678999998886
No 224
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.55 E-value=1.1e+02 Score=34.00 Aligned_cols=59 Identities=10% Similarity=0.157 Sum_probs=34.2
Q ss_pred ccChhhHHHHHHHHh--hCCCEEEEEcC-CcccHH---HHHhCCeeEEecC----chHHHHhhcCEEEe
Q 002354 766 GVKPNEKKRFINELQ--NDENVVAMVGD-GINDAA---ALASSHIGVAMGG----GVGAASEVASVVLM 824 (932)
Q Consensus 766 ~~~p~~K~~~v~~l~--~~g~~v~~vGD-g~ND~~---al~~A~vgIa~~~----~~~~a~~~ad~vl~ 824 (932)
-++|..=.++++.+. -+|..|.++|- +.-=.| +|..++..+.+.+ ..+.+...||+|+.
T Consensus 139 PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~~ADIVIs 207 (296)
T PRK14188 139 PCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRADILVA 207 (296)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCHHHHHhcCCEEEE
Confidence 355554445555442 25889999994 333333 4556676666652 23444557888876
No 225
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=48.04 E-value=94 Score=33.34 Aligned_cols=125 Identities=11% Similarity=0.160 Sum_probs=73.8
Q ss_pred HHHHHHHHhCCCeEEEEcCCCHHHHHHHHHH----cCCCCCcee-cccChhhHHHHHHHHhhCCCEEEEEcCCccc----
Q 002354 725 AHVVNSLSSQGIGVYMLSGDKKNSAEYVASL----VGIPKDKVL-SGVKPNEKKRFINELQNDENVVAMVGDGIND---- 795 (932)
Q Consensus 725 ~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~----~gi~~~~v~-~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND---- 795 (932)
.+.++...+.|.++.++ |..+.++...++. .|+.-.-.+ .-..|++..++++.+.+.+..+++||=|.-=
T Consensus 95 ~~ll~~~~~~~~~v~ll-G~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~PkQE~~ 173 (243)
T PRK03692 95 EALMARAGKEGTPVFLV-GGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKIVTVAMGSPKQEIF 173 (243)
T ss_pred HHHHHHHHhcCCeEEEE-CCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEECCCcHHHHH
Confidence 45566677788888888 5555554444443 355310011 1135777778999999999999999988422
Q ss_pred ---HHHHHhCCeeEEecCchHHH---HhhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 002354 796 ---AAALASSHIGVAMGGGVGAA---SEVASVVLMGNRLSQLLVALELSRLTMKTVKQNLWW 851 (932)
Q Consensus 796 ---~~al~~A~vgIa~~~~~~~a---~~~ad~vl~~~~~~~i~~~i~~gR~~~~~i~~nl~~ 851 (932)
....-...+.+++|.+-|.. ..-|.-...+-++..+.+++.+=|+..+.+. |-.|
T Consensus 174 ~~~~~~~~~~~v~~gvGg~fD~~aG~~~RAP~w~~~~gLEWlyRl~~EP~R~~R~~~-~~~F 234 (243)
T PRK03692 174 MRDCRLVYPDALYMGVGGTYDVFTGHVKRAPKIWQNLGLEWLYRLLSQPSRIRRQLR-LLRY 234 (243)
T ss_pred HHHHHHhCCCCEEEEeCeEEEEecCCcCcCcHHHHHhChHHHHHhHhCcHHHHHHHH-HHHH
Confidence 22222345566665422211 1223334445589999999999888555443 4443
No 226
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=47.91 E-value=91 Score=29.40 Aligned_cols=65 Identities=14% Similarity=0.058 Sum_probs=45.3
Q ss_pred EEEEEEEecccccHHHHHHHHHHHhCCC-e-EEEEcCCCHHHHHHHHHHcCCCCCceecccChhhHHH
Q 002354 709 MLAGLIYVEDRIRDDAAHVVNSLSSQGI-G-VYMLSGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKR 774 (932)
Q Consensus 709 ~~lG~i~l~D~lr~~~~~~i~~L~~~Gi-~-v~~~TGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~ 774 (932)
.++++-.......+.+++.++.|+++|. + .+++-|.....-.+-.++.|++. -++.+.++++-..
T Consensus 52 d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~-~~~~~~~~~~~~~ 118 (122)
T cd02071 52 DVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAE-IFGPGTSIEEIID 118 (122)
T ss_pred CEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCE-EECCCCCHHHHHH
Confidence 4566666667888899999999999977 3 45666766655566677999872 4445566654433
No 227
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=47.71 E-value=1.2e+02 Score=30.66 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=34.8
Q ss_pred EEEEEecCCCChhhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeCC
Q 002354 127 VIILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVS 172 (932)
Q Consensus 127 ~~~l~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~~ 172 (932)
...+.|.|+--.+..+-++..+.+--.|-.++|.- .++-.|+|..
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r-Dg~GvV~~~r 159 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR-DGVGVVEYLR 159 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeec-ccceeeeeee
Confidence 35567899999999999999999988887777754 4466677643
No 228
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=47.35 E-value=1.5e+02 Score=28.66 Aligned_cols=73 Identities=12% Similarity=0.092 Sum_probs=51.6
Q ss_pred HhCCCeEEEEEE--------------CCEEEEEEEecccccHHHHHHHHHHHhCCC-e-EEEEcCCC------HHHHHHH
Q 002354 695 DLMNQSLVYVGV--------------DNMLAGLIYVEDRIRDDAAHVVNSLSSQGI-G-VYMLSGDK------KNSAEYV 752 (932)
Q Consensus 695 ~~~g~~~~~va~--------------~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi-~-v~~~TGd~------~~~a~~i 752 (932)
+..|+.++|++. +-.++|+-.+.-...+.+++.++.|++.|. . .+++-|.. +......
T Consensus 28 r~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~ 107 (137)
T PRK02261 28 TEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKK 107 (137)
T ss_pred HHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHH
Confidence 345666666654 235778877778889999999999999966 2 45666654 4556678
Q ss_pred HHHcCCCCCceecccCh
Q 002354 753 ASLVGIPKDKVLSGVKP 769 (932)
Q Consensus 753 a~~~gi~~~~v~~~~~p 769 (932)
++++|++ .+|..-+|
T Consensus 108 l~~~G~~--~vf~~~~~ 122 (137)
T PRK02261 108 FKEMGFD--RVFPPGTD 122 (137)
T ss_pred HHHcCCC--EEECcCCC
Confidence 8999986 78874433
No 229
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=47.03 E-value=2.9e+02 Score=30.08 Aligned_cols=84 Identities=12% Similarity=0.191 Sum_probs=57.5
Q ss_pred EEecccccHHHHHHHHHHHhCCCe-EEEEcCCC-HHHHHHHHHHcCCCCCceec--c--------cChhhHHHHHHHHhh
Q 002354 714 IYVEDRIRDDAAHVVNSLSSQGIG-VYMLSGDK-KNSAEYVASLVGIPKDKVLS--G--------VKPNEKKRFINELQN 781 (932)
Q Consensus 714 i~l~D~lr~~~~~~i~~L~~~Gi~-v~~~TGd~-~~~a~~ia~~~gi~~~~v~~--~--------~~p~~K~~~v~~l~~ 781 (932)
+.+-|-+-++..+.++.+++.|+. +.+++=.. .+..+.+++...= -+|+ + ..+++-.++++.+++
T Consensus 123 viipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~g---FIY~vS~~GvTG~~~~~~~~~~~~i~~ir~ 199 (263)
T CHL00200 123 LIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPG---CIYLVSTTGVTGLKTELDKKLKKLIETIKK 199 (263)
T ss_pred EEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCC---cEEEEcCCCCCCCCccccHHHHHHHHHHHH
Confidence 346777778999999999999998 55666554 4566777777651 1332 1 224455677888887
Q ss_pred CCCEEEEEcCCcccHHHHH
Q 002354 782 DENVVAMVGDGINDAAALA 800 (932)
Q Consensus 782 ~g~~v~~vGDg~ND~~al~ 800 (932)
.-..-.++|=|+|+..-.+
T Consensus 200 ~t~~Pi~vGFGI~~~e~~~ 218 (263)
T CHL00200 200 MTNKPIILGFGISTSEQIK 218 (263)
T ss_pred hcCCCEEEECCcCCHHHHH
Confidence 6666778899999654443
No 230
>PF13246 Hydrolase_like2: Putative hydrolase of sodium-potassium ATPase alpha subunit
Probab=46.25 E-value=34 Score=30.58 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=33.1
Q ss_pred cCCCcHHHHHHHHHHhcCCcc--ccc--cCCCeEEec---CCeeEEE-E-cC--eE-EEeecHHHHhhcCCC
Q 002354 625 NTVHPIGKAIVEAAEFSNCQN--VKV--ADGTFIEEP---GSGTVAI-I-ED--RK-VSVGTIDWLRSHGVD 684 (932)
Q Consensus 625 ~s~hPi~~Ai~~~a~~~~~~~--~~~--~~~~~~~~~---g~g~~~~-i-~~--~~-~~~Gs~~~i~~~~~~ 684 (932)
....|.+.|++.++...+... ... ........| .+..+.+ + ++ .. ++||+++.+.++|..
T Consensus 19 ~~G~ptE~ALl~~~~~~g~~~~~~~~~~~~~~~~~~pF~S~rK~msvv~~~~~~~~~~~KGA~e~il~~Ct~ 90 (91)
T PF13246_consen 19 IIGDPTEKALLRFAKKLGVGIDIKEIRSKYKIVAEIPFDSERKRMSVVVRNDGKYILYVKGAPEVILDRCTH 90 (91)
T ss_pred ccCCcCHHHHHHHHHHcCCCCcHHHHHhhcceeEEEccCcccceeEEEEeCCCEEEEEcCCChHHHHHhcCC
Confidence 456788888888888774321 110 111112222 2222222 2 33 23 889999999998853
No 231
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=46.23 E-value=29 Score=34.90 Aligned_cols=47 Identities=26% Similarity=0.234 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHhcCCCeeEEEeecCCcE-------------------EEEEeCCCccccchhhhhhHHHHHHHH
Q 002354 138 GGCAASVKRILESQPQVSSASVNLTTET-------------------AIVWPVSKAKVIPNWQRQLGEALAKHL 192 (932)
Q Consensus 138 ~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~-------------------~~V~~~~~~~~~~~~~~~~~~~i~~~i 192 (932)
++|=|-+|+...++|||.++.+-++.+. +.|.||+..++. ++|.+..
T Consensus 13 gGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy--------~~LL~~f 78 (174)
T COG0225 13 GGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISY--------EELLEVF 78 (174)
T ss_pred ccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccH--------HHHHHHH
Confidence 4899999999999999999998765543 678899999886 5565554
No 232
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=45.91 E-value=45 Score=35.52 Aligned_cols=96 Identities=18% Similarity=0.206 Sum_probs=61.8
Q ss_pred cHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC--Ccee-c----ccChhhH--HHHHHHHhhCCCEEEEEcC
Q 002354 721 RDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPK--DKVL-S----GVKPNEK--KRFINELQNDENVVAMVGD 791 (932)
Q Consensus 721 r~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~--~~v~-~----~~~p~~K--~~~v~~l~~~g~~v~~vGD 791 (932)
-++..+++++||+.|..+.++|- .....+.+-..+|+.. +.+. + -..|+-+ ...++.+..+...++++||
T Consensus 115 ~~~~~~~lq~lR~~g~~l~iisN-~d~r~~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~vhIgD 193 (237)
T KOG3085|consen 115 LDGMQELLQKLRKKGTILGIISN-FDDRLRLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEECVHIGD 193 (237)
T ss_pred ccHHHHHHHHHHhCCeEEEEecC-CcHHHHHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHeEEecC
Confidence 34555999999999988888883 3334447777777741 1111 1 1334433 4455666667889999999
Q ss_pred C-cccHHHHHhCCeeEEe-cCchHHHHh
Q 002354 792 G-INDAAALASSHIGVAM-GGGVGAASE 817 (932)
Q Consensus 792 g-~ND~~al~~A~vgIa~-~~~~~~a~~ 817 (932)
. .||...-+.++.---+ .++....++
T Consensus 194 ~l~nD~~gA~~~G~~ailv~~~~~~~~~ 221 (237)
T KOG3085|consen 194 LLENDYEGARNLGWHAILVDNSITALKE 221 (237)
T ss_pred ccccccHhHHHcCCEEEEEccccchhhh
Confidence 5 8999999888875333 344444443
No 233
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=45.90 E-value=38 Score=28.78 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=35.9
Q ss_pred HHHHHHHHhhCCCEEEEEcCC-cccHHHHHhCCeeEE-e--cC-chHHHH---hhcCEEEe
Q 002354 772 KKRFINELQNDENVVAMVGDG-INDAAALASSHIGVA-M--GG-GVGAAS---EVASVVLM 824 (932)
Q Consensus 772 K~~~v~~l~~~g~~v~~vGDg-~ND~~al~~A~vgIa-~--~~-~~~~a~---~~ad~vl~ 824 (932)
-....+.+.-....++||||. ..|+.+-+++++--. + |. ..+... ..+|+|+.
T Consensus 10 ~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv~ 70 (75)
T PF13242_consen 10 LEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDYVVD 70 (75)
T ss_dssp HHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSEEES
T ss_pred HHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCEEEC
Confidence 344555555455689999999 999999999998643 3 32 222322 57888874
No 234
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=45.65 E-value=23 Score=38.49 Aligned_cols=15 Identities=7% Similarity=-0.133 Sum_probs=6.3
Q ss_pred cCCcchhHHHHHHHh
Q 002354 9 TTTTTLTLFTISKAR 23 (932)
Q Consensus 9 ~~~~~~~~~~~~~~~ 23 (932)
++.|.+-.=.++.++
T Consensus 136 ~i~P~fr~gny~~gi 150 (271)
T COG1512 136 TIAPAFRDGNYAGGL 150 (271)
T ss_pred hhCcccccCcHHHHH
Confidence 344444433344444
No 235
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=44.98 E-value=38 Score=38.14 Aligned_cols=88 Identities=26% Similarity=0.332 Sum_probs=59.2
Q ss_pred ECCEEEEEEEecccccHHHHHHHHHHHh---CCCeEEEE-cCCCHHHHHHHHHHcCCCCCceecccChhhHHHHHHHHhh
Q 002354 706 VDNMLAGLIYVEDRIRDDAAHVVNSLSS---QGIGVYML-SGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQN 781 (932)
Q Consensus 706 ~~~~~lG~i~l~D~lr~~~~~~i~~L~~---~Gi~v~~~-TGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~ 781 (932)
.|++.+|.+=+ | ++-..+.+|.. ....|+-. +|++-+-+..-|+.+|++...+.-..+|.+|.+-++.+
T Consensus 47 E~lQ~~gSFK~----R-GA~n~i~~Ls~e~~~~~gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~-- 119 (347)
T COG1171 47 ENLQPVGSFKI----R-GAYNKLSSLSEEEERAAGVIAASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGY-- 119 (347)
T ss_pred ccCcccccchh----h-hHHHHHHhcChhhhhcCceEEecCCcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHHHhc--
Confidence 35555555433 2 24444555542 11223333 47788888889999999987788889999998877754
Q ss_pred CCCEEEEEcCCcccHHHHHh
Q 002354 782 DENVVAMVGDGINDAAALAS 801 (932)
Q Consensus 782 ~g~~v~~vGDg~ND~~al~~ 801 (932)
|..|...||..+|+.+...
T Consensus 120 -GaeVil~g~~~dda~~~a~ 138 (347)
T COG1171 120 -GAEVILHGDNFDDAYAAAE 138 (347)
T ss_pred -CCEEEEECCCHHHHHHHHH
Confidence 6678888888888766543
No 236
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=44.96 E-value=2.3e+02 Score=34.25 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCC-HHHHHHHHHHcCCCCCceecccChhhHHHHHHHHhhCCCEEEEEcCCcc
Q 002354 723 DAAHVVNSLSSQGIGVYMLSGDK-KNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDGIN 794 (932)
Q Consensus 723 ~~~~~i~~L~~~Gi~v~~~TGd~-~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~N 794 (932)
|...+++..++.+-++.+++=.+ ...+..++..++++- ..+.-.++++-...|+.++++|.. +.|||++-
T Consensus 95 Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i-~~~~~~~~~e~~~~v~~lk~~G~~-~vvG~~~~ 165 (538)
T PRK15424 95 DVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRI-EQRSYVTEEDARGQINELKANGIE-AVVGAGLI 165 (538)
T ss_pred HHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCce-EEEEecCHHHHHHHHHHHHHCCCC-EEEcCchH
Confidence 67788888888888888887544 557788999999863 566678889999999999999965 56688754
No 237
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=43.44 E-value=89 Score=34.09 Aligned_cols=84 Identities=13% Similarity=0.135 Sum_probs=49.4
Q ss_pred cHHHHHHHHHHHhCCCeEEEEcCCCHHHH----------HH----HHHHcCCCCCceecccChhhHHHHHHHHhhCCCEE
Q 002354 721 RDDAAHVVNSLSSQGIGVYMLSGDKKNSA----------EY----VASLVGIPKDKVLSGVKPNEKKRFINELQNDENVV 786 (932)
Q Consensus 721 r~~~~~~i~~L~~~Gi~v~~~TGd~~~~a----------~~----ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v 786 (932)
-++..++++.|++.|+ ..++|....... .. +....|-.. .....-.|+-=..+++.+......+
T Consensus 145 y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~-~~~gKP~p~~~~~~~~~~~~~~~~~ 222 (279)
T TIGR01452 145 YAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQP-LVVGKPSPYMFECITENFSIDPART 222 (279)
T ss_pred HHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCce-eccCCCCHHHHHHHHHHhCCChhhE
Confidence 6789999999999897 566765332111 01 111111110 1112223332234445554456789
Q ss_pred EEEcCCc-ccHHHHHhCCeeE
Q 002354 787 AMVGDGI-NDAAALASSHIGV 806 (932)
Q Consensus 787 ~~vGDg~-ND~~al~~A~vgI 806 (932)
+||||.. .|+.+-+.|++--
T Consensus 223 lmIGD~~~tDI~~A~~aGi~s 243 (279)
T TIGR01452 223 LMVGDRLETDILFGHRCGMTT 243 (279)
T ss_pred EEECCChHHHHHHHHHcCCcE
Confidence 9999994 9999999998863
No 238
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.43 E-value=2.1e+02 Score=31.53 Aligned_cols=61 Identities=11% Similarity=0.190 Sum_probs=36.4
Q ss_pred cccChhhHHHHHHHHhh--CCCEEEEEcC-CcccHH---HHHhCCeeEEec--Cch--HHHHhhcCEEEeC
Q 002354 765 SGVKPNEKKRFINELQN--DENVVAMVGD-GINDAA---ALASSHIGVAMG--GGV--GAASEVASVVLMG 825 (932)
Q Consensus 765 ~~~~p~~K~~~v~~l~~--~g~~v~~vGD-g~ND~~---al~~A~vgIa~~--~~~--~~a~~~ad~vl~~ 825 (932)
.-++|..=.++++.+.- .|..++++|- |+-=.| +|..++.-+.+. ... ......||+|+.-
T Consensus 138 ~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~a 208 (284)
T PRK14179 138 IPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVVA 208 (284)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEe
Confidence 34556554555554432 4889999999 555444 455666666553 222 2345679998873
No 239
>PRK11018 hypothetical protein; Provisional
Probab=42.29 E-value=79 Score=27.41 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=42.7
Q ss_pred EEEEEecCCCChhhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeCCCccccchhhhhhHHHHHHHHHhcCccccc
Q 002354 127 VIILDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAKVIPNWQRQLGEALAKHLTSCGFKSSL 201 (932)
Q Consensus 127 ~~~l~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~~~~~~~~~~~~~~~~~i~~~i~~~Gy~~~~ 201 (932)
..++++.|..|+.-.-+.+++|++++.= +.+.|..|..... +.+....++.||++..
T Consensus 8 ~~~lD~rG~~CP~Pvl~~kk~l~~l~~G---------~~L~V~~d~~~a~---------~di~~~~~~~G~~v~~ 64 (78)
T PRK11018 8 DYRLDMVGEPCPYPAVATLEALPQLKKG---------EILEVVSDCPQSI---------NNIPLDARNHGYTVLD 64 (78)
T ss_pred CeeEECCCCcCCHHHHHHHHHHHhCCCC---------CEEEEEeCCccHH---------HHHHHHHHHcCCEEEE
Confidence 3679999999999999999999998632 2344554543322 5788889999999753
No 240
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=41.73 E-value=82 Score=34.58 Aligned_cols=88 Identities=16% Similarity=0.332 Sum_probs=58.3
Q ss_pred EEEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHH---HcCCC---CCceecccChhhHHHHHHHHhh---C
Q 002354 712 GLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVAS---LVGIP---KDKVLSGVKPNEKKRFINELQN---D 782 (932)
Q Consensus 712 G~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~---~~gi~---~~~v~~~~~p~~K~~~v~~l~~---~ 782 (932)
|.+...+..-|++.++++.|++.|-++.++|-....+-+..++ ++|+. .+.++ +|. ..+...|++ .
T Consensus 31 GVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~v~e~~i~---ssa--~~~a~ylk~~~~~ 105 (306)
T KOG2882|consen 31 GVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNSVKEENIF---SSA--YAIADYLKKRKPF 105 (306)
T ss_pred cceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccccCccccc---ChH--HHHHHHHHHhCcC
Confidence 5566788999999999999999998899999887777777665 56654 22332 121 233334433 2
Q ss_pred CCEEEEEc-CCcccHHHHHhCCeeE
Q 002354 783 ENVVAMVG-DGINDAAALASSHIGV 806 (932)
Q Consensus 783 g~~v~~vG-Dg~ND~~al~~A~vgI 806 (932)
+..|..+| +|+++ -|+.|++-.
T Consensus 106 ~k~Vyvig~~gi~~--eL~~aG~~~ 128 (306)
T KOG2882|consen 106 GKKVYVIGEEGIRE--ELDEAGFEY 128 (306)
T ss_pred CCeEEEecchhhhH--HHHHcCcee
Confidence 45677664 46665 466766433
No 241
>PTZ00445 p36-lilke protein; Provisional
Probab=41.46 E-value=99 Score=32.37 Aligned_cols=112 Identities=12% Similarity=0.101 Sum_probs=70.2
Q ss_pred HHhCCCeEEEEEECCEEEE-----EEEec-------ccccHHHHHHHHHHHhCCCeEEEEcCCCHHH-------------
Q 002354 694 EDLMNQSLVYVGVDNMLAG-----LIYVE-------DRIRDDAAHVVNSLSSQGIGVYMLSGDKKNS------------- 748 (932)
Q Consensus 694 ~~~~g~~~~~va~~~~~lG-----~i~l~-------D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~------------- 748 (932)
....|-+++....|+++++ ..--. -.++|+.++-+++|++.||+++++|=-.+.+
T Consensus 38 L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~ 117 (219)
T PTZ00445 38 LNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGD 117 (219)
T ss_pred HHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechH
Confidence 4456778888888888776 22111 1279999999999999999999999443332
Q ss_pred --HHHHHHHcCCCC--Cceecc------------------cChhhHHHHHHHHhh----CCCEEEEEcCCcccHHHHHhC
Q 002354 749 --AEYVASLVGIPK--DKVLSG------------------VKPNEKKRFINELQN----DENVVAMVGDGINDAAALASS 802 (932)
Q Consensus 749 --a~~ia~~~gi~~--~~v~~~------------------~~p~~K~~~v~~l~~----~g~~v~~vGDg~ND~~al~~A 802 (932)
+...-+..+.+. +.+||- -.|+.|.--.+.+.+ ..+.++++=|....+.+-+..
T Consensus 118 ~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~l 197 (219)
T PTZ00445 118 RMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKE 197 (219)
T ss_pred HHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHC
Confidence 333333333221 133322 123343332233322 346799999999999988886
Q ss_pred Cee
Q 002354 803 HIG 805 (932)
Q Consensus 803 ~vg 805 (932)
++-
T Consensus 198 Gi~ 200 (219)
T PTZ00445 198 GYI 200 (219)
T ss_pred CCE
Confidence 653
No 242
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=41.44 E-value=1.1e+02 Score=30.48 Aligned_cols=75 Identities=21% Similarity=0.266 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecc--cChhhH---HHHHHHHhhCCCEEEEE-cCCcccH
Q 002354 723 DAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSG--VKPNEK---KRFINELQNDENVVAMV-GDGINDA 796 (932)
Q Consensus 723 ~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~--~~p~~K---~~~v~~l~~~g~~v~~v-GDg~ND~ 796 (932)
...+.=++|++.|+..+++.||.......+++++|+. .|++. ..|+++ .++.+.+++.|-.+-.+ ++..-+.
T Consensus 54 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~--~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~~~~~~L~~~ 131 (165)
T PF00875_consen 54 SLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGAT--AVYFNEEYTPYERRRDERVRKALKKHGIKVHTFDDHTLVPP 131 (165)
T ss_dssp HHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTES--EEEEE---SHHHHHHHHHHHHHHHHTTSEEEEE--SSSS-H
T ss_pred HHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcC--eeEeccccCHHHHHHHHHHHHHHHhcceEEEEECCcEEEec
Confidence 3444456678889999999999999999999999987 67765 344443 34555667667665544 4445554
Q ss_pred HHH
Q 002354 797 AAL 799 (932)
Q Consensus 797 ~al 799 (932)
..+
T Consensus 132 ~~i 134 (165)
T PF00875_consen 132 DDI 134 (165)
T ss_dssp HHC
T ss_pred ccc
Confidence 443
No 243
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=41.37 E-value=71 Score=29.08 Aligned_cols=41 Identities=17% Similarity=0.094 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhhccCCCeEEEEEec
Q 002354 331 MLIAFVLLGKNLEQRAKIKATSDMTGLLGILPSKARLLVDN 371 (932)
Q Consensus 331 ~il~~~llg~~le~~~~~ka~~~l~~L~~~~p~~~~vir~~ 371 (932)
++++++.+-.++-.|-.+|..+..+++.+.+.+--+|+-.+
T Consensus 14 ~~vl~~~ifyFli~RPQrKr~K~~~~ml~sL~kGD~VvT~g 54 (97)
T COG1862 14 PLVLIFAIFYFLIIRPQRKRMKEHQELLNSLKKGDEVVTIG 54 (97)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 33333334344344444444455555554444444444443
No 244
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=40.29 E-value=39 Score=38.55 Aligned_cols=9 Identities=44% Similarity=0.346 Sum_probs=3.6
Q ss_pred ccccccccc
Q 002354 68 LECMSSCAA 76 (932)
Q Consensus 68 ~~~~~~~~~ 76 (932)
..-+++.||
T Consensus 47 ~~~~a~aaa 55 (641)
T KOG3915|consen 47 PEPIASAAA 55 (641)
T ss_pred cchhHHHHH
Confidence 334444433
No 245
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=40.22 E-value=37 Score=37.08 Aligned_cols=40 Identities=23% Similarity=0.168 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHhcCCCeeEEEeecCCc-------------------EEEEEeCCCcccc
Q 002354 138 GGCAASVKRILESQPQVSSASVNLTTE-------------------TAIVWPVSKAKVI 177 (932)
Q Consensus 138 ~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~-------------------~~~V~~~~~~~~~ 177 (932)
++|=|.+|..+.+++||.+++|=++.+ .+.|.||+..++.
T Consensus 134 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~VcsG~tgH~EaV~V~yDp~~isy 192 (283)
T PRK05550 134 GGCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEFDPAKISY 192 (283)
T ss_pred cCCchhhhhhHhhCcCEEEEEEeeCCCCCCCCChhhcccCCCCCeEEEEEEECCccCCH
Confidence 489999999999999999999877654 3788999998876
No 246
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=40.09 E-value=73 Score=29.95 Aligned_cols=68 Identities=24% Similarity=0.385 Sum_probs=44.2
Q ss_pred ecccccHHHHHHHHHHHhCCCeE---EEEcCCCHHHHH------HHHHHcCCCCCce--ecccChhhHHHHHHHHhhCC
Q 002354 716 VEDRIRDDAAHVVNSLSSQGIGV---YMLSGDKKNSAE------YVASLVGIPKDKV--LSGVKPNEKKRFINELQNDE 783 (932)
Q Consensus 716 l~D~lr~~~~~~i~~L~~~Gi~v---~~~TGd~~~~a~------~ia~~~gi~~~~v--~~~~~p~~K~~~v~~l~~~g 783 (932)
+...++++.++-++.|++.|+++ ++.-||++.+.. ..|+++||....+ -...+.++-.+.|+.+.+..
T Consensus 8 va~~i~~~l~~~i~~l~~~~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~ 86 (117)
T PF00763_consen 8 VAKEIKEELKEEIEKLKEKGITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDP 86 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHCT---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCC
Confidence 34678899999999999998874 456798887664 4689999964322 23456777778888887654
No 247
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.91 E-value=2e+02 Score=31.68 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=34.6
Q ss_pred ccChhhHHHHHHHHhh--CCCEEEEEcCCcc----cHHHHHh--CCeeEEecCchH--HHHhhcCEEEeC
Q 002354 766 GVKPNEKKRFINELQN--DENVVAMVGDGIN----DAAALAS--SHIGVAMGGGVG--AASEVASVVLMG 825 (932)
Q Consensus 766 ~~~p~~K~~~v~~l~~--~g~~v~~vGDg~N----D~~al~~--A~vgIa~~~~~~--~a~~~ad~vl~~ 825 (932)
-++|..=.++++.++- .|..|+.+|.|.. =+.+|.. |.|-++-....+ .....||+++..
T Consensus 138 PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~~ADIvV~A 207 (285)
T PRK14191 138 PATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNADIVCVG 207 (285)
T ss_pred CCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCEEEEe
Confidence 3556555555555432 4899999999821 1224433 455554443333 245679998874
No 248
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.00 E-value=1.7e+02 Score=31.44 Aligned_cols=116 Identities=15% Similarity=0.201 Sum_probs=70.2
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC-CC-ceecccC--------hhhHHHHHHHHhh-------
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIP-KD-KVLSGVK--------PNEKKRFINELQN------- 781 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~-~~-~v~~~~~--------p~~K~~~v~~l~~------- 781 (932)
.+|+++.+..+.|++.+|.+.+.|..--...+.+-++.... +. .+.++.. -.-+..++..+.+
T Consensus 138 ~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~pn~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v~~~ 217 (298)
T KOG3128|consen 138 ALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHPNVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSVLQN 217 (298)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCccHHhhhhhhhhcccchhhhhhHHHHHHHccchHHHHh
Confidence 36899999999999999999999976666666666555432 11 1111110 1112233332221
Q ss_pred ---------CCCEEEEEcCCcccHHHHHhC-Cee----EEecCc-----hHHHHhhcCEEEeCCChhHHHHH
Q 002354 782 ---------DENVVAMVGDGINDAAALASS-HIG----VAMGGG-----VGAASEVASVVLMGNRLSQLLVA 834 (932)
Q Consensus 782 ---------~g~~v~~vGDg~ND~~al~~A-~vg----Ia~~~~-----~~~a~~~ad~vl~~~~~~~i~~~ 834 (932)
.+..|...||.+.|+-|-..+ +++ |..+++ .+.-++.-||||.+|..-.++.-
T Consensus 218 ~s~yf~~~~~~~nVillGdsigdl~ma~gv~~~~~iLkig~l~d~vee~~~~ymd~ydIvL~~D~tldv~~s 289 (298)
T KOG3128|consen 218 ESEYFHQLAGRVNVILLGDSIGDLHMADGVPRVGHILKIGYLNDSVEEALEKYMDSYDIVLVHDETLDVANS 289 (298)
T ss_pred hhHHHhhccCCceEEEeccccccchhhcCCcccccceeeecccchHHHHHHHHHhhcceEEecCcccchhHH
Confidence 256799999999998875432 222 333322 22334678999998876655543
No 249
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=38.76 E-value=5.4e+02 Score=27.86 Aligned_cols=78 Identities=15% Similarity=0.248 Sum_probs=52.1
Q ss_pred cccccHHHHHHHHHHHhCCCeEEE-EcCCC-HHHHHHHHHHcCCCCCceec----c------cChhhHHHHHHHHhhCCC
Q 002354 717 EDRIRDDAAHVVNSLSSQGIGVYM-LSGDK-KNSAEYVASLVGIPKDKVLS----G------VKPNEKKRFINELQNDEN 784 (932)
Q Consensus 717 ~D~lr~~~~~~i~~L~~~Gi~v~~-~TGd~-~~~a~~ia~~~gi~~~~v~~----~------~~p~~K~~~v~~l~~~g~ 784 (932)
-|-+-++..+.++.+++.|+..+. +|-.. .+..+.+++...= -+|. . -.|.+-.+.++.+++...
T Consensus 124 pDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~g---fIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~ 200 (258)
T PRK13111 124 PDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASG---FVYYVSRAGVTGARSADAADLAELVARLKAHTD 200 (258)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCC---cEEEEeCCCCCCcccCCCccHHHHHHHHHhcCC
Confidence 355557888999999999998554 77666 4566777766432 2432 1 223445668888887666
Q ss_pred EEEEEcCCcccHH
Q 002354 785 VVAMVGDGINDAA 797 (932)
Q Consensus 785 ~v~~vGDg~ND~~ 797 (932)
.-.++|=|+++..
T Consensus 201 ~pv~vGfGI~~~e 213 (258)
T PRK13111 201 LPVAVGFGISTPE 213 (258)
T ss_pred CcEEEEcccCCHH
Confidence 6778899985543
No 250
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=37.63 E-value=55 Score=32.49 Aligned_cols=41 Identities=12% Similarity=0.127 Sum_probs=37.5
Q ss_pred ccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 002354 718 DRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIP 759 (932)
Q Consensus 718 D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~ 759 (932)
=.+||++.+.+++|++. +++++.|.-....|..+.+.++..
T Consensus 57 v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~ 97 (156)
T TIGR02250 57 TKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPD 97 (156)
T ss_pred EEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcC
Confidence 35799999999999955 999999999999999999999876
No 251
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=37.59 E-value=2.8e+02 Score=26.99 Aligned_cols=75 Identities=16% Similarity=0.155 Sum_probs=55.7
Q ss_pred EEEECCEEEEEEEecccccHHHHHHHHHHHhCCCeEEEEc--CCCHHHHHHHHHHcCCCCCceecccChhhHHHHHHHHh
Q 002354 703 YVGVDNMLAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLS--GDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQ 780 (932)
Q Consensus 703 ~va~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~T--Gd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~ 780 (932)
.+..||+++-+...++-=+. +.|+.+.+.|..+++.| ...+.+++.+++.+|-.-..---.++-++|.++.+.+.
T Consensus 47 ildL~G~~l~l~S~R~~~~~---evi~~I~~~G~PviVAtDV~p~P~~V~Kia~~f~A~ly~P~~dlsveeK~~l~~~~~ 123 (138)
T PF04312_consen 47 ILDLDGELLDLKSSRNMSRS---EVIEWISEYGKPVIVATDVSPPPETVKKIARSFNAVLYTPERDLSVEEKQELAREYS 123 (138)
T ss_pred EEecCCcEEEEEeecCCCHH---HHHHHHHHcCCEEEEEecCCCCcHHHHHHHHHhCCcccCCCCcCCHHHHHHHHHhhC
Confidence 34457888888777776554 56777788999999998 45788999999999963111112477789999988875
No 252
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=37.47 E-value=1.7e+02 Score=27.13 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=12.1
Q ss_pred HHHHHHhHHHHHhhhccCCCeEEEEEec
Q 002354 344 QRAKIKATSDMTGLLGILPSKARLLVDN 371 (932)
Q Consensus 344 ~~~~~ka~~~l~~L~~~~p~~~~vir~~ 371 (932)
.+..+|..+..+++.+.+..--+|+-.+
T Consensus 36 ~RpqkK~~k~~~~~~~~Lk~Gd~VvT~g 63 (106)
T PRK05585 36 IRPQQKRQKEHKKMLSSLAKGDEVVTNG 63 (106)
T ss_pred ccHHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 3333333444444444444444454443
No 253
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=37.23 E-value=2.3e+02 Score=27.45 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=43.7
Q ss_pred EEEEEEEecccccHHHHHHHHHHHhCCC--eEEEEcCCC---HHH---HHHHHHHcCCCCCceecccChhhHHHHHHHHh
Q 002354 709 MLAGLIYVEDRIRDDAAHVVNSLSSQGI--GVYMLSGDK---KNS---AEYVASLVGIPKDKVLSGVKPNEKKRFINELQ 780 (932)
Q Consensus 709 ~~lG~i~l~D~lr~~~~~~i~~L~~~Gi--~v~~~TGd~---~~~---a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~ 780 (932)
.++|+=.+.-.--+..+++++.|+++|. .++++-|-. ... .+.-++++|++ .+|..-+|- .+++..++
T Consensus 54 diVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~--~vF~pgt~~--~~iv~~l~ 129 (134)
T TIGR01501 54 DAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFD--RVFAPGTPP--EVVIADLK 129 (134)
T ss_pred CEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCC--EEECcCCCH--HHHHHHHH
Confidence 4666666666677788999999999987 356666632 122 24458899986 787654433 23444444
No 254
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=36.99 E-value=69 Score=26.61 Aligned_cols=53 Identities=19% Similarity=0.267 Sum_probs=37.0
Q ss_pred EEecCCCChhhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeCCCccccchhhhhhHHHHHHHHHhcCccccc
Q 002354 130 LDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAKVIPNWQRQLGEALAKHLTSCGFKSSL 201 (932)
Q Consensus 130 l~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~~~~~~~~~~~~~~~~~i~~~i~~~Gy~~~~ 201 (932)
+++.|+.|+.-.-...++| +++.= +.+.|..|.... . +.+.+..++.||+...
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~g---------~~l~v~~d~~~s-~--------~~i~~~~~~~G~~~~~ 54 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEAG---------GEIEVLVDNEVA-K--------ENVSRFAESRGYEVSV 54 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCCC---------CEEEEEEcChhH-H--------HHHHHHHHHcCCEEEE
Confidence 5789999999999999999 44321 234444443322 1 5788889999999853
No 255
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.12 E-value=1.7e+02 Score=26.22 Aligned_cols=71 Identities=14% Similarity=0.075 Sum_probs=48.1
Q ss_pred ccEEEEEecCCCChhhHHHHHHHHhcCCCeeEEE-----eecCCcEEEEEeCCCccccchhhhhhHHHHHHHHHhcCccc
Q 002354 125 SDVIILDVGGMTCGGCAASVKRILESQPQVSSAS-----VNLTTETAIVWPVSKAKVIPNWQRQLGEALAKHLTSCGFKS 199 (932)
Q Consensus 125 ~~~~~l~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~-----Vn~~~~~~~V~~~~~~~~~~~~~~~~~~~i~~~i~~~Gy~~ 199 (932)
.+++.+++--.+-.--.--+.+.|++++||+.++ ++..+....+.......+- +++.+.|++.|-..
T Consensus 5 iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldy--------dei~~~iE~~Gg~I 76 (97)
T COG1888 5 IRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDY--------DEIEEVIEELGGAI 76 (97)
T ss_pred ceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCH--------HHHHHHHHHcCCee
Confidence 4566677666553334456778889999988765 4455666666655555555 88999999999876
Q ss_pred cccc
Q 002354 200 SLRD 203 (932)
Q Consensus 200 ~~~~ 203 (932)
.-.+
T Consensus 77 HSiD 80 (97)
T COG1888 77 HSID 80 (97)
T ss_pred eehh
Confidence 5433
No 256
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=36.05 E-value=1.1e+02 Score=26.40 Aligned_cols=47 Identities=36% Similarity=0.364 Sum_probs=37.3
Q ss_pred EEEecccccHHHHHHHHHHHhCCCeEEE-EcCCCHHHHHHHHHHcCCC
Q 002354 713 LIYVEDRIRDDAAHVVNSLSSQGIGVYM-LSGDKKNSAEYVASLVGIP 759 (932)
Q Consensus 713 ~i~l~D~lr~~~~~~i~~L~~~Gi~v~~-~TGd~~~~a~~ia~~~gi~ 759 (932)
++.+.+...+.+.+..+.|++.|+++.+ ..+.+...-...|++.|++
T Consensus 6 ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~ 53 (91)
T cd00860 6 VIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIP 53 (91)
T ss_pred EEeeCchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCC
Confidence 3455677888999999999999999887 5666777777778888875
No 257
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=35.37 E-value=1.7e+02 Score=30.10 Aligned_cols=71 Identities=17% Similarity=0.254 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhCCCeEEEEc-------C------CCHHHHHHHHHHcCCCCCceecccCh---h---hHHHHHHHHhhCC
Q 002354 723 DAAHVVNSLSSQGIGVYMLS-------G------DKKNSAEYVASLVGIPKDKVLSGVKP---N---EKKRFINELQNDE 783 (932)
Q Consensus 723 ~~~~~i~~L~~~Gi~v~~~T-------G------d~~~~a~~ia~~~gi~~~~v~~~~~p---~---~K~~~v~~l~~~g 783 (932)
|..-++..++++|++|.-++ + .+...++.+|+.+|++ .+.....+ + +-.+.++.++++|
T Consensus 11 DS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgip--l~~i~~~~~~e~~~~~l~~~l~~~~~~g 88 (194)
T cd01994 11 DSCYALYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIP--LIRIEISGEEEDEVEDLKELLRKLKEEG 88 (194)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCc--EEEEeCCCCchHHHHHHHHHHHHHHHcC
Confidence 44556666777777655443 1 1567889999999997 33333222 1 1223344444456
Q ss_pred CEEEEEcCCccc
Q 002354 784 NVVAMVGDGIND 795 (932)
Q Consensus 784 ~~v~~vGDg~ND 795 (932)
...+..||-.-|
T Consensus 89 ~~~vv~G~i~sd 100 (194)
T cd01994 89 VDAVVFGAILSE 100 (194)
T ss_pred CCEEEECccccH
Confidence 666777775444
No 258
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=34.63 E-value=55 Score=30.70 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=30.4
Q ss_pred ccHHHHHHHHHHHhCCCe-EEEEcCCCHHHHHHHHHHcCCC
Q 002354 720 IRDDAAHVVNSLSSQGIG-VYMLSGDKKNSAEYVASLVGIP 759 (932)
Q Consensus 720 lr~~~~~~i~~L~~~Gi~-v~~~TGd~~~~a~~ia~~~gi~ 759 (932)
..+.+.+.++++.+.|++ +|+.+|.....+...|++.|+.
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIR 104 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-E
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCE
Confidence 466788999999999997 8999999999999999999983
No 259
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=33.83 E-value=1e+02 Score=35.14 Aligned_cols=90 Identities=26% Similarity=0.335 Sum_probs=62.7
Q ss_pred EEEEE-CCEEEEEEEecccccHHHHHHHHHHHhCCCe--EEEEcCCC-HHHHHHHHHHcCCCCCceecccChhhHHHHHH
Q 002354 702 VYVGV-DNMLAGLIYVEDRIRDDAAHVVNSLSSQGIG--VYMLSGDK-KNSAEYVASLVGIPKDKVLSGVKPNEKKRFIN 777 (932)
Q Consensus 702 ~~va~-~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~--v~~~TGd~-~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~ 777 (932)
+|+-+ +++..|-|-+ .++..++++|-+.+-+ |+-.|+.| ...+..-|+++|++...|.-..+|..|.+
T Consensus 83 vyLK~E~lQpsgSFK~-----RGa~~~~~kla~~~~~~gViasSaGNha~a~Ayaa~~LgipaTIVmP~~tp~~kiq--- 154 (457)
T KOG1250|consen 83 VYLKREDLQPSGSFKI-----RGAGNALQKLAKQQKKAGVIASSAGNHAQAAAYAARKLGIPATIVMPVATPLMKIQ--- 154 (457)
T ss_pred eEEEehhcccccceeh-----hhHHHHHHHHHHhhhcCceEEecCccHHHHHHHHHHhcCCceEEEecCCChHHHHH---
Confidence 34433 4556665543 3788889888877643 56666555 45666678999999878888889987755
Q ss_pred HHhhCCCEEEEEcCCcccHHHH
Q 002354 778 ELQNDENVVAMVGDGINDAAAL 799 (932)
Q Consensus 778 ~l~~~g~~v~~vGDg~ND~~al 799 (932)
.++..|..|...|+....+.++
T Consensus 155 ~~~nlGA~Vil~G~~~deAk~~ 176 (457)
T KOG1250|consen 155 RCRNLGATVILSGEDWDEAKAF 176 (457)
T ss_pred HHhccCCEEEEecccHHHHHHH
Confidence 5566788899988876555544
No 260
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=33.75 E-value=1.7e+02 Score=30.77 Aligned_cols=71 Identities=18% Similarity=0.188 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhCCCeEE-EEc------------CCCHHHHHHHHHHcCCCCCceecccC---hhh---HHHHHHHHhhCC
Q 002354 723 DAAHVVNSLSSQGIGVY-MLS------------GDKKNSAEYVASLVGIPKDKVLSGVK---PNE---KKRFINELQNDE 783 (932)
Q Consensus 723 ~~~~~i~~L~~~Gi~v~-~~T------------Gd~~~~a~~ia~~~gi~~~~v~~~~~---p~~---K~~~v~~l~~~g 783 (932)
|..-++..++++|++|+ ++| +.....++.+|+.+|++ .....++ +.. -...++.++++|
T Consensus 9 DS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip--~~~i~~~~~~~~~~~~l~~~l~~~~~~g 86 (218)
T TIGR03679 9 DSNYALYKALEEGHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIP--LVKIETSGEKEKEVEDLKGALKELKREG 86 (218)
T ss_pred HHHHHHHHHHHcCCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCC--EEEEECCCCChHHHHHHHHHHHHHHHcC
Confidence 44456667777888763 444 34567889999999997 3333333 222 234445555567
Q ss_pred CEEEEEcCCccc
Q 002354 784 NVVAMVGDGIND 795 (932)
Q Consensus 784 ~~v~~vGDg~ND 795 (932)
......||-.-|
T Consensus 87 ~~~vv~G~i~sd 98 (218)
T TIGR03679 87 VEGIVTGAIASR 98 (218)
T ss_pred CCEEEECCcccH
Confidence 777788875443
No 261
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=33.69 E-value=2.1e+02 Score=27.51 Aligned_cols=71 Identities=13% Similarity=0.088 Sum_probs=49.8
Q ss_pred CCEEEEEEEecccccHHHHHHHHHHHhCCC-e-EEEEcCCCHHHHHHHHHHcCCCCCceecccChhhHHHHHHH
Q 002354 707 DNMLAGLIYVEDRIRDDAAHVVNSLSSQGI-G-VYMLSGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINE 778 (932)
Q Consensus 707 ~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi-~-v~~~TGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~ 778 (932)
+-..+|+-.+...-.+..++.++.|+++|. . .+++-|-.+..-..-.+++|++. .+..+.++.+..+.+..
T Consensus 53 ~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~-~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 53 DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAE-IFGPGTPIPESAIFLLK 125 (132)
T ss_pred CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCE-EECCCCCHHHHHHHHHH
Confidence 345677777778888899999999999987 3 35555545555566688999972 44456667766665554
No 262
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.29 E-value=1.2e+02 Score=33.26 Aligned_cols=67 Identities=24% Similarity=0.296 Sum_probs=48.4
Q ss_pred ecccccHHHHHHHHHHHhC-CCe---EEEEcCCCHHHHH------HHHHHcCCCCCceec--ccChhhHHHHHHHHhhC
Q 002354 716 VEDRIRDDAAHVVNSLSSQ-GIG---VYMLSGDKKNSAE------YVASLVGIPKDKVLS--GVKPNEKKRFINELQND 782 (932)
Q Consensus 716 l~D~lr~~~~~~i~~L~~~-Gi~---v~~~TGd~~~~a~------~ia~~~gi~~~~v~~--~~~p~~K~~~v~~l~~~ 782 (932)
+.++++++.++.++.|++. |++ .+++-||++.... ..++++||+...+.- ..++++-.+.++.|.+.
T Consensus 11 ~a~~i~~~~~~~i~~~~~~~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d 89 (283)
T PRK14192 11 LAKQIEEELSVRVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNAN 89 (283)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4578899999999999877 765 3566788887664 468899997433322 45666667788888765
No 263
>PLN02591 tryptophan synthase
Probab=31.95 E-value=3.3e+02 Score=29.38 Aligned_cols=91 Identities=19% Similarity=0.208 Sum_probs=60.3
Q ss_pred cccccHHHHHHHHHHHhCCCe-EEEEcCCC-HHHHHHHHHHcCCCCCceec--c--------cChhhHHHHHHHHhhCCC
Q 002354 717 EDRIRDDAAHVVNSLSSQGIG-VYMLSGDK-KNSAEYVASLVGIPKDKVLS--G--------VKPNEKKRFINELQNDEN 784 (932)
Q Consensus 717 ~D~lr~~~~~~i~~L~~~Gi~-v~~~TGd~-~~~a~~ia~~~gi~~~~v~~--~--------~~p~~K~~~v~~l~~~g~ 784 (932)
-|-+-++..+..+.+++.|+. +.++|-.. ....+.+++...= -+|. + -.|++-.+.++.+++...
T Consensus 113 pDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~g---FIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~ 189 (250)
T PLN02591 113 PDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEG---FVYLVSSTGVTGARASVSGRVESLLQELKEVTD 189 (250)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCC---cEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCC
Confidence 355558899999999999998 45565555 3457777776531 2332 1 225666777888888777
Q ss_pred EEEEEcCCcc---cHHHHHhC-CeeEEecC
Q 002354 785 VVAMVGDGIN---DAAALASS-HIGVAMGG 810 (932)
Q Consensus 785 ~v~~vGDg~N---D~~al~~A-~vgIa~~~ 810 (932)
.-.++|=|++ |+..+... -=|+-+|+
T Consensus 190 ~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 190 KPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred CceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 7888999999 55554443 23455543
No 264
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=31.92 E-value=2.2e+02 Score=30.42 Aligned_cols=81 Identities=16% Similarity=0.293 Sum_probs=49.6
Q ss_pred ecccccHHHHHHHHHHHhCCCeEEE-EcCCC-HHHHHHHHH-HcCCC----CCceeccc--ChhhHHHHHHHHhhCCCEE
Q 002354 716 VEDRIRDDAAHVVNSLSSQGIGVYM-LSGDK-KNSAEYVAS-LVGIP----KDKVLSGV--KPNEKKRFINELQNDENVV 786 (932)
Q Consensus 716 l~D~lr~~~~~~i~~L~~~Gi~v~~-~TGd~-~~~a~~ia~-~~gi~----~~~v~~~~--~p~~K~~~v~~l~~~g~~v 786 (932)
+-|-.-++..+.++.+++.|++.++ ++-.. ....+.+++ ..|.. ..-++... .+.+-.+.++.+++....-
T Consensus 110 ipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~p 189 (242)
T cd04724 110 IPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLP 189 (242)
T ss_pred ECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCc
Confidence 3344446888999999999998665 54333 455666776 55541 00111111 1234456677777765667
Q ss_pred EEEcCCcccH
Q 002354 787 AMVGDGINDA 796 (932)
Q Consensus 787 ~~vGDg~ND~ 796 (932)
.++|=|+|+.
T Consensus 190 I~vggGI~~~ 199 (242)
T cd04724 190 IAVGFGISTP 199 (242)
T ss_pred EEEEccCCCH
Confidence 8889999954
No 265
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=31.86 E-value=4.7e+02 Score=31.55 Aligned_cols=104 Identities=12% Similarity=0.119 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhCCCeEEEEcCC-CHHHHHHHHHHcCCCCCceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHHHHh
Q 002354 723 DAAHVVNSLSSQGIGVYMLSGD-KKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAALAS 801 (932)
Q Consensus 723 ~~~~~i~~L~~~Gi~v~~~TGd-~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~ 801 (932)
|...+++.+++.+-++.+++=. ....+..++.-++++- .++.-.++++-...++.++++|.. +.|||++--
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i-~~~~~~~~~e~~~~~~~l~~~G~~-~viG~~~~~------ 156 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDI-VQRSYVTEEDARSCVNDLRARGIG-AVVGAGLIT------ 156 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCce-EEEEecCHHHHHHHHHHHHHCCCC-EEECChHHH------
Confidence 6778888888887787777644 4467888999999863 566778888999999999999965 566887432
Q ss_pred CCeeEEecCchHHHHhh-cCEEEeCCChhHHHHHHHHHHHHHHHHH
Q 002354 802 SHIGVAMGGGVGAASEV-ASVVLMGNRLSQLLVALELSRLTMKTVK 846 (932)
Q Consensus 802 A~vgIa~~~~~~~a~~~-ad~vl~~~~~~~i~~~i~~gR~~~~~i~ 846 (932)
+.|++. -..|+..+ .+.|..+++.+..+.+..+
T Consensus 157 -----------~~A~~~gl~~ili~s-~esi~~a~~~A~~~~~~~~ 190 (526)
T TIGR02329 157 -----------DLAEQAGLHGVFLYS-ADSVRQAFDDALDVARATR 190 (526)
T ss_pred -----------HHHHHcCCceEEEec-HHHHHHHHHHHHHHHHHHH
Confidence 223322 22333333 3777888887777655443
No 266
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=31.78 E-value=22 Score=35.94 Aligned_cols=13 Identities=54% Similarity=0.687 Sum_probs=12.3
Q ss_pred EEecCCCCcccCc
Q 002354 573 VVFDKTGTLTIGR 585 (932)
Q Consensus 573 I~fDKTGTLT~g~ 585 (932)
+|||.+||||.+.
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6999999999998
No 267
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=31.61 E-value=1.8e+02 Score=30.63 Aligned_cols=64 Identities=14% Similarity=0.299 Sum_probs=49.6
Q ss_pred cHHHHHHHHHHHhCCCeEEEEcCCCH-----HHHHHHHHHcCCCCCceecccChhhHHHHHHHHhhCCCEEEE
Q 002354 721 RDDAAHVVNSLSSQGIGVYMLSGDKK-----NSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAM 788 (932)
Q Consensus 721 r~~~~~~i~~L~~~Gi~v~~~TGd~~-----~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~ 788 (932)
.++..++++++++.|++ .+++||.. .....+++++|+. +++-+--.+|.++++.+...|.....
T Consensus 72 ~~~l~~~l~~~~~~g~~-~vv~G~i~sd~~~~~~e~v~~~~gl~---~~~PLw~~~~~el~~~~~~~G~~~~i 140 (218)
T TIGR03679 72 VEDLKGALKELKREGVE-GIVTGAIASRYQKSRIERICEELGLK---VFAPLWGRDQEEYLRELVERGFRFII 140 (218)
T ss_pred HHHHHHHHHHHHHcCCC-EEEECCcccHhHHHHHHHHHHhCCCe---EEeehhcCCHHHHHHHHHHCCCEEEE
Confidence 34477888888888887 57788875 4566889999994 77777778899999999998876544
No 268
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=30.97 E-value=2.6e+02 Score=26.09 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=13.4
Q ss_pred HHHHHhhhccCCCeEEEEEecCCCCcEEEE
Q 002354 351 TSDMTGLLGILPSKARLLVDNDAKDSIIEV 380 (932)
Q Consensus 351 ~~~l~~L~~~~p~~~~vir~~~~~g~~~~V 380 (932)
.+..+++.+.+..--+|+-.+|--|+...|
T Consensus 29 ~K~~~~m~~~Lk~GD~VvT~gGi~G~V~~I 58 (109)
T PRK05886 29 MQATIDLHESLQPGDRVHTTSGLQATIVGI 58 (109)
T ss_pred HHHHHHHHHhcCCCCEEEECCCeEEEEEEE
Confidence 334444444444444555554433444444
No 269
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=30.81 E-value=1.9e+02 Score=30.93 Aligned_cols=64 Identities=14% Similarity=0.160 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCCHHHH----------HHHHHHcCCCCCce---ecccChhhHHHHHHHHhhCCCEEE
Q 002354 722 DDAAHVVNSLSSQGIGVYMLSGDKKNSA----------EYVASLVGIPKDKV---LSGVKPNEKKRFINELQNDENVVA 787 (932)
Q Consensus 722 ~~~~~~i~~L~~~Gi~v~~~TGd~~~~a----------~~ia~~~gi~~~~v---~~~~~p~~K~~~v~~l~~~g~~v~ 787 (932)
+-.++-|+.+|+.||.+ .||+..... ...++++|++.-++ +-.+.+++|.++|+..++.|-+|.
T Consensus 41 ~~l~eki~la~~~~V~v--~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~ 117 (237)
T TIGR03849 41 DIVKEKIEMYKDYGIKV--YPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVL 117 (237)
T ss_pred HHHHHHHHHHHHcCCeE--eCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEe
Confidence 45788899999999875 488743332 34788899874333 335788999999999998876655
No 270
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=30.52 E-value=45 Score=36.27 Aligned_cols=9 Identities=78% Similarity=1.531 Sum_probs=3.4
Q ss_pred CCCCCCCCC
Q 002354 91 GGGGGGGGG 99 (932)
Q Consensus 91 ~~~~~~~~~ 99 (932)
+++|.|+|+
T Consensus 252 ~~gfsgGGg 260 (271)
T COG1512 252 GGGFSGGGG 260 (271)
T ss_pred CCCcCCCCC
Confidence 334333333
No 271
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=30.19 E-value=4.1e+02 Score=28.72 Aligned_cols=80 Identities=14% Similarity=0.267 Sum_probs=50.0
Q ss_pred EecccccHHHHHHHHHHHhCCCeEE-EEcCCC-HHHHHHHHHHcC-CCCCcee-----ccc---ChhhHHHHHHHHhhCC
Q 002354 715 YVEDRIRDDAAHVVNSLSSQGIGVY-MLSGDK-KNSAEYVASLVG-IPKDKVL-----SGV---KPNEKKRFINELQNDE 783 (932)
Q Consensus 715 ~l~D~lr~~~~~~i~~L~~~Gi~v~-~~TGd~-~~~a~~ia~~~g-i~~~~v~-----~~~---~p~~K~~~v~~l~~~g 783 (932)
.+-|..-++..+.++.+++.|+..+ +++=.. ......+++... .. -+. .+. .+.+-.+.++.+++.-
T Consensus 120 iipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfi--y~vs~~G~TG~~~~~~~~~~~~i~~lr~~~ 197 (256)
T TIGR00262 120 LVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFV--YLVSRAGVTGARNRAASALNELVKRLKAYS 197 (256)
T ss_pred EECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCE--EEEECCCCCCCcccCChhHHHHHHHHHhhc
Confidence 3456667889999999999999855 666544 345567777654 21 111 111 2233456667776654
Q ss_pred CEEEEEcCCcccH
Q 002354 784 NVVAMVGDGINDA 796 (932)
Q Consensus 784 ~~v~~vGDg~ND~ 796 (932)
..-.++|=|+|..
T Consensus 198 ~~pi~vgfGI~~~ 210 (256)
T TIGR00262 198 AKPVLVGFGISKP 210 (256)
T ss_pred CCCEEEeCCCCCH
Confidence 4457789998844
No 272
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=29.99 E-value=60 Score=28.36 Aligned_cols=54 Identities=15% Similarity=-0.050 Sum_probs=31.6
Q ss_pred hhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeCCCccccchhhhhhHHHHHHHHHhcCcccc
Q 002354 139 GCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAKVIPNWQRQLGEALAKHLTSCGFKSS 200 (932)
Q Consensus 139 ~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~~~~~~~~~~~~~~~~~i~~~i~~~Gy~~~ 200 (932)
--|..++-.|+..++|-.+=+|.-.+.+.|.+|+...+. +++.+.+++..+++.
T Consensus 11 eeA~~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~--------e~lL~~le~~kpEVi 64 (88)
T PF11491_consen 11 EEAMVKQYELSKNEAVYRVFINGYARNGFVIFDESKLSK--------EELLEMLEEFKPEVI 64 (88)
T ss_dssp TTTHHHHHTTTTTTTB------TTSS--EEE--B-S-SH--------HHH---HHHTTT-SS
T ss_pred HHHHHHHHHhhcccceeeeeecccccceEEEECcccCCH--------HHHHHHHHhcChhhe
Confidence 345678899999999999999999999999999988765 889999998776654
No 273
>PF15584 Imm44: Immunity protein 44
Probab=29.97 E-value=22 Score=31.68 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCEEeeeEEEE
Q 002354 387 VGDHIVVLPGDRIPADGVVR 406 (932)
Q Consensus 387 ~GDiV~v~~Ge~IPaDgvll 406 (932)
+.+-.+|+.|++|||||+=.
T Consensus 13 ~~~~~~I~SG~~iP~~GIwE 32 (94)
T PF15584_consen 13 PSEGGVIKSGQEIPCDGIWE 32 (94)
T ss_pred CCCCCEEecCCCcccCCeEc
Confidence 45567899999999999853
No 274
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=29.88 E-value=89 Score=31.58 Aligned_cols=79 Identities=23% Similarity=0.272 Sum_probs=55.6
Q ss_pred ecccccHHHHHHHHHH-HhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecccChhhHHHHHHHHhhCCCEEEEEcCC--
Q 002354 716 VEDRIRDDAAHVVNSL-SSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDG-- 792 (932)
Q Consensus 716 l~D~lr~~~~~~i~~L-~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg-- 792 (932)
+.+-.-+++.+..+++ .+.|.++++..| .+|..+.+.++++ .+--..+..|=.+.++..++.+.+++++|-.
T Consensus 14 v~~~~~e~~v~~a~~~~~~~g~dViIsRG---~ta~~lr~~~~iP--VV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~ 88 (176)
T PF06506_consen 14 VIEASLEEAVEEARQLLESEGADVIISRG---GTAELLRKHVSIP--VVEIPISGFDILRALAKAKKYGPKIAVVGYPNI 88 (176)
T ss_dssp EEE--HHHHHHHHHHHHTTTT-SEEEEEH---HHHHHHHCC-SS---EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-
T ss_pred EEEecHHHHHHHHHHhhHhcCCeEEEECC---HHHHHHHHhCCCC--EEEECCCHhHHHHHHHHHHhcCCcEEEEecccc
Confidence 4455567888888888 889999998887 4777788888887 7888899999888888888889999998864
Q ss_pred cccHHHH
Q 002354 793 INDAAAL 799 (932)
Q Consensus 793 ~ND~~al 799 (932)
.+|...+
T Consensus 89 ~~~~~~~ 95 (176)
T PF06506_consen 89 IPGLESI 95 (176)
T ss_dssp SCCHHHH
T ss_pred cHHHHHH
Confidence 3344433
No 275
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=29.79 E-value=96 Score=28.02 Aligned_cols=69 Identities=14% Similarity=0.096 Sum_probs=48.0
Q ss_pred cEEEEEecCCCChhhHHHHHHHHhcCCCeeEEE-----eecCCcEEEEEeCCCccccchhhhhhHHHHHHHHHhcCcccc
Q 002354 126 DVIILDVGGMTCGGCAASVKRILESQPQVSSAS-----VNLTTETAIVWPVSKAKVIPNWQRQLGEALAKHLTSCGFKSS 200 (932)
Q Consensus 126 ~~~~l~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~-----Vn~~~~~~~V~~~~~~~~~~~~~~~~~~~i~~~i~~~Gy~~~ 200 (932)
+++.|+|-=.+-++- --+.+.|.+++||..++ +|-.+..+.|.......+. +++.++|++.|-...
T Consensus 5 rRlVLDVlKP~~p~i-~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~--------d~i~~~Ie~~Gg~IH 75 (95)
T PF02680_consen 5 RRLVLDVLKPHEPSI-VELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDF--------DEIKEAIEELGGVIH 75 (95)
T ss_dssp EEEEEEEEEESSS-H-HHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-H--------HHHHHHHHHTT-EEE
T ss_pred eEEEEEeecCCCCCH-HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCH--------HHHHHHHHHcCCeEE
Confidence 466666666655554 45788999999998775 4557777777777666665 899999999998765
Q ss_pred ccc
Q 002354 201 LRD 203 (932)
Q Consensus 201 ~~~ 203 (932)
-.+
T Consensus 76 SID 78 (95)
T PF02680_consen 76 SID 78 (95)
T ss_dssp EEE
T ss_pred eee
Confidence 443
No 276
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.33 E-value=1.3e+02 Score=33.10 Aligned_cols=67 Identities=22% Similarity=0.319 Sum_probs=47.4
Q ss_pred ecccccHHHHHHHHHHHhCCCe---EEEEcCCCHHHH------HHHHHHcCCCCCcee--cccChhhHHHHHHHHhhC
Q 002354 716 VEDRIRDDAAHVVNSLSSQGIG---VYMLSGDKKNSA------EYVASLVGIPKDKVL--SGVKPNEKKRFINELQND 782 (932)
Q Consensus 716 l~D~lr~~~~~~i~~L~~~Gi~---v~~~TGd~~~~a------~~ia~~~gi~~~~v~--~~~~p~~K~~~v~~l~~~ 782 (932)
+.++++++.++.++.|++.|++ .+++-||++... ...|+++||..+.+. ...+.++-.+.|+.|.+.
T Consensus 9 iA~~i~~~ik~~v~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d 86 (282)
T PRK14182 9 IAAKVKGEVATEVRALAARGVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNAD 86 (282)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567899999999999988886 456678888765 457888999743322 234556666777777654
No 277
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=29.28 E-value=4.2e+02 Score=34.09 Aligned_cols=79 Identities=22% Similarity=0.276 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhccCCCeEE------------EEEecCCCCcEEEEeCCCccCCCEEEEcCCC
Q 002354 330 IMLIAFVLLGKNLEQRAKIKATSDMTGLLGILPSKAR------------LLVDNDAKDSIIEVPCNSLHVGDHIVVLPGD 397 (932)
Q Consensus 330 ~~il~~~llg~~le~~~~~ka~~~l~~L~~~~p~~~~------------vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge 397 (932)
+++++-.+++.+.|.+++ |+.+.++++....+...+ +-.++=.-|....+...|.+|-|.+.++ |+
T Consensus 96 ~iv~~~~~i~~~~e~~a~-ka~~~L~~l~~~~~~V~R~~~~~~dg~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~li~-g~ 173 (867)
T TIGR01524 96 LMVLASGLLGFIQESRAE-RAAYALKNMVKNTATVLRVINENGNGSMDEVPIDALVPGDLIELAAGDIIPADARVIS-AR 173 (867)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHhhhccCeeEEEEecccCCCCeEEEEEhhcCCCCCEEEECCCCEEcccEEEEe-cC
Confidence 455556678888898886 788888888766554444 2111112357888999999999988886 54
Q ss_pred EEeeeEEEEeeee
Q 002354 398 RIPADGVVRAGRS 410 (932)
Q Consensus 398 ~IPaDgvll~G~~ 410 (932)
-+-+|=-.+.|++
T Consensus 174 ~l~VDES~LTGES 186 (867)
T TIGR01524 174 DLFINQSALTGES 186 (867)
T ss_pred ceEEEcccccCCC
Confidence 4666777777765
No 278
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=28.93 E-value=5.3e+02 Score=24.78 Aligned_cols=101 Identities=15% Similarity=0.091 Sum_probs=63.7
Q ss_pred EEEEEEecccccHHHHHHHHHHHhCCCeEEEEcCC-CHHHHHHHHHHcCCCCCceecccC---hhhHHHHHHHHhhCCC-
Q 002354 710 LAGLIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGD-KKNSAEYVASLVGIPKDKVLSGVK---PNEKKRFINELQNDEN- 784 (932)
Q Consensus 710 ~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd-~~~~a~~ia~~~gi~~~~v~~~~~---p~~K~~~v~~l~~~g~- 784 (932)
++|.+.. |--..+..=+-..|+..|++|+-+-+| +.+...+-|++-+-+- ...|.+. .+.-..+++.|+++|.
T Consensus 6 ~~a~~g~-D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adi-i~iSsl~~~~~~~~~~~~~~L~~~g~~ 83 (132)
T TIGR00640 6 LVAKMGQ-DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHV-VGVSSLAGGHLTLVPALRKELDKLGRP 83 (132)
T ss_pred EEEeeCC-CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCE-EEEcCchhhhHHHHHHHHHHHHhcCCC
Confidence 3455554 555556666667889999999888877 4455556666666541 2233333 3445677888888763
Q ss_pred -EEEEEcC--CcccHHHHHhCCeeEEecCch
Q 002354 785 -VVAMVGD--GINDAAALASSHIGVAMGGGV 812 (932)
Q Consensus 785 -~v~~vGD--g~ND~~al~~A~vgIa~~~~~ 812 (932)
...++|- ...|...+++++|-=.++.++
T Consensus 84 ~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt 114 (132)
T TIGR00640 84 DILVVVGGVIPPQDFDELKEMGVAEIFGPGT 114 (132)
T ss_pred CCEEEEeCCCChHhHHHHHHCCCCEEECCCC
Confidence 5677773 445688888888755554443
No 279
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=28.83 E-value=1.2e+02 Score=25.41 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=40.7
Q ss_pred EEecCCCChhhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeCCCccccchhhhhhHHHHHHHHHhcCcccccc
Q 002354 130 LDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAKVIPNWQRQLGEALAKHLTSCGFKSSLR 202 (932)
Q Consensus 130 l~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~~~~~~~~~~~~~~~~~i~~~i~~~Gy~~~~~ 202 (932)
+++.|+.|+.=.-..+++|++++.= +.+.|..|..... +.+.+..++.||+....
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~~G---------~~l~V~~d~~~a~---------~di~~~~~~~G~~~~~~ 56 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQDG---------EQLEVKASDPGFA---------RDAQAWCKSTGNTLISL 56 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCCC---------CEEEEEECCccHH---------HHHHHHHHHcCCEEEEE
Confidence 5789999999999999999998632 2345555543322 67889999999997643
No 280
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=28.81 E-value=1.5e+02 Score=29.66 Aligned_cols=37 Identities=19% Similarity=0.032 Sum_probs=32.9
Q ss_pred hhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeCCCcc
Q 002354 139 GCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAK 175 (932)
Q Consensus 139 ~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~~~~~ 175 (932)
.=+.+|.+.+.++|||+++.+-...+.+.|-++.+..
T Consensus 54 ~~A~~Ia~~v~~v~~V~dA~vvVtg~~A~Vgv~~~~~ 90 (158)
T TIGR02898 54 DVADEIASEAAKVKGVKDATVVITGNYAYVGVDLTNG 90 (158)
T ss_pred HHHHHHHHHHhcCCCCceEEEEEECCEEEEEEEcCCC
Confidence 6688999999999999999999999999998876543
No 281
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=28.35 E-value=1.8e+02 Score=25.60 Aligned_cols=48 Identities=29% Similarity=0.297 Sum_probs=39.9
Q ss_pred EEEEecc---cccHHHHHHHHHHHhCCCeEEEE-cCCCHHHHHHHHHHcCCC
Q 002354 712 GLIYVED---RIRDDAAHVVNSLSSQGIGVYML-SGDKKNSAEYVASLVGIP 759 (932)
Q Consensus 712 G~i~l~D---~lr~~~~~~i~~L~~~Gi~v~~~-TGd~~~~a~~ia~~~gi~ 759 (932)
.++.+.+ +..+-+.+..+.|+++|+++.+- ++++......-|...|++
T Consensus 3 ~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p 54 (94)
T PF03129_consen 3 VIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIP 54 (94)
T ss_dssp EEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTES
T ss_pred EEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCe
Confidence 4567777 78889999999999999998777 666777788888888986
No 282
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=28.26 E-value=5.3e+02 Score=33.58 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=26.3
Q ss_pred CcEEEEeCCCccCCCEEEEcCCCEEeeeEEEEeeee
Q 002354 375 DSIIEVPCNSLHVGDHIVVLPGDRIPADGVVRAGRS 410 (932)
Q Consensus 375 g~~~~V~~~~Lv~GDiV~v~~Ge~IPaDgvll~G~~ 410 (932)
|....+...|.+|-|.++++ |+..-+|=-.+.|++
T Consensus 187 GDiV~l~~Gd~IPaD~~li~-g~~l~VdES~LTGES 221 (941)
T TIGR01517 187 GDIVSLSTGDVVPADGVFIS-GLSLEIDESSITGES 221 (941)
T ss_pred CCEEEECCCCEecccEEEEE-cCcEEEEecccCCCC
Confidence 57888999999999999986 444556666666665
No 283
>PLN02565 cysteine synthase
Probab=27.64 E-value=2.1e+02 Score=32.04 Aligned_cols=76 Identities=9% Similarity=0.094 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhCCC-----e-EEEE-cCCCHHHHHHHHHHcCCCCCceecccChhhHHHHHHHHhhCCCEEEEEcCCccc
Q 002354 723 DAAHVVNSLSSQGI-----G-VYML-SGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDGIND 795 (932)
Q Consensus 723 ~~~~~i~~L~~~Gi-----~-v~~~-TGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND 795 (932)
.+...+..+.+.|. + ++-. ||..-......|+.+|++-..+..+-.|+.|.+.++. .|..|..+++..+.
T Consensus 49 ~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~---~GA~V~~~~~~~~~ 125 (322)
T PLN02565 49 IGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLA---FGAELVLTDPAKGM 125 (322)
T ss_pred HHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHH---cCCEEEEeCCCCCc
Confidence 56667777777765 3 4445 4656666677999999975555556667777776654 58889899875444
Q ss_pred HHHHHh
Q 002354 796 AAALAS 801 (932)
Q Consensus 796 ~~al~~ 801 (932)
-.+.+.
T Consensus 126 ~~~~~~ 131 (322)
T PLN02565 126 KGAVQK 131 (322)
T ss_pred HHHHHH
Confidence 444433
No 284
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=27.46 E-value=1.4e+02 Score=32.87 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=26.1
Q ss_pred ccHHHHHHHHHHHhCCCeEEEEcCCCHHHH-HHHHHHcCC
Q 002354 720 IRDDAAHVVNSLSSQGIGVYMLSGDKKNSA-EYVASLVGI 758 (932)
Q Consensus 720 lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a-~~ia~~~gi 758 (932)
=.+++...-+.|++.|.+++++|......+ +...+.++.
T Consensus 61 GP~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~~~~~~~ 100 (291)
T PF14336_consen 61 GPPGAAALARALQALGKEVVIVTDERCAPVVKAAVRAAGL 100 (291)
T ss_pred ChHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHHHHHhh
Confidence 366788888888888888888886644433 344444443
No 285
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.45 E-value=1.7e+02 Score=32.10 Aligned_cols=67 Identities=25% Similarity=0.321 Sum_probs=47.0
Q ss_pred ecccccHHHHHHHHHHHhCCCeE---EEEcCCCHHHH------HHHHHHcCCCCCcee--cccChhhHHHHHHHHhhC
Q 002354 716 VEDRIRDDAAHVVNSLSSQGIGV---YMLSGDKKNSA------EYVASLVGIPKDKVL--SGVKPNEKKRFINELQND 782 (932)
Q Consensus 716 l~D~lr~~~~~~i~~L~~~Gi~v---~~~TGd~~~~a------~~ia~~~gi~~~~v~--~~~~p~~K~~~v~~l~~~ 782 (932)
+.++++++.++.++.|++.|+++ +++-||++.+. ...|+++||..+.+. ...++++-.+.|+.|.+.
T Consensus 9 ~a~~i~~~l~~~v~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D 86 (282)
T PRK14166 9 LSAKIKEELKEKNQFLKSKGIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHD 86 (282)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45678899999999999888764 56678887765 456888999743332 234556666777777554
No 286
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=27.45 E-value=2.1e+02 Score=26.72 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCCeEEEEc-CCCH-------HHHHHHHHHcCCCCC---ceecccChhhHHHHHHHHhhCCC-EEEEEcC
Q 002354 724 AAHVVNSLSSQGIGVYMLS-GDKK-------NSAEYVASLVGIPKD---KVLSGVKPNEKKRFINELQNDEN-VVAMVGD 791 (932)
Q Consensus 724 ~~~~i~~L~~~Gi~v~~~T-Gd~~-------~~a~~ia~~~gi~~~---~v~~~~~p~~K~~~v~~l~~~g~-~v~~vGD 791 (932)
..+-++.|+++|++.+|.- .|.+ ..-...|+++||.-. .....+++++=..+.+.+.+... +.++|.-
T Consensus 16 ~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~hC~s 95 (110)
T PF04273_consen 16 SPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLPKPVLAHCRS 95 (110)
T ss_dssp -HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTTTSEEEE-SC
T ss_pred CHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEECCC
Confidence 3466789999999977764 2321 123578999998411 12245667777777777776544 5555555
Q ss_pred CcccHHHH
Q 002354 792 GINDAAAL 799 (932)
Q Consensus 792 g~ND~~al 799 (932)
|. .+.+|
T Consensus 96 G~-Ra~~l 102 (110)
T PF04273_consen 96 GT-RASAL 102 (110)
T ss_dssp SH-HHHHH
T ss_pred Ch-hHHHH
Confidence 53 44433
No 287
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=27.13 E-value=1.2e+02 Score=28.39 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=30.2
Q ss_pred ccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 002354 720 IRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIP 759 (932)
Q Consensus 720 lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~ 759 (932)
-.+++.++++.++++|++++.+|++.. ...++.+.|..
T Consensus 55 ~t~e~i~~~~~a~~~g~~iI~IT~~~~--l~~~~~~~~~~ 92 (119)
T cd05017 55 NTEETLSAVEQAKERGAKIVAITSGGK--LLEMAREHGVP 92 (119)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHcCCc
Confidence 357899999999999999999998774 44567666654
No 288
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=27.12 E-value=1.2e+02 Score=38.93 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=50.8
Q ss_pred HHHhCCCeEEEEEECCEEEEEEEecc-----------cccHHHHHHHHHHHhC-CCeEEEEcCCCHHHHHHHHHHcCC
Q 002354 693 MEDLMNQSLVYVGVDNMLAGLIYVED-----------RIRDDAAHVVNSLSSQ-GIGVYMLSGDKKNSAEYVASLVGI 758 (932)
Q Consensus 693 ~~~~~g~~~~~va~~~~~lG~i~l~D-----------~lr~~~~~~i~~L~~~-Gi~v~~~TGd~~~~a~~ia~~~gi 758 (932)
.+.....+++++.+||++..+..--+ .+.+++.++++.|.+. +..|+++||+........-..+++
T Consensus 585 ~y~~a~~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~~L 662 (934)
T PLN03064 585 RYLQSNNRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEFDM 662 (934)
T ss_pred HHHhccceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCCCc
Confidence 34455678999999999987643322 2458889999999875 678999999999999888876654
No 289
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=26.29 E-value=2.7e+02 Score=28.30 Aligned_cols=119 Identities=13% Similarity=0.160 Sum_probs=70.3
Q ss_pred HHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcC-----CCCCceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHHH
Q 002354 725 AHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVG-----IPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAAL 799 (932)
Q Consensus 725 ~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~g-----i~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al 799 (932)
.+.++.+.+.|.++.++ |..+..+...++.+. +.-.-...-.+|++..++++.+.+.+..+++||=|.-==+.+
T Consensus 38 ~~l~~~~~~~~~~vfll-G~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~VglG~PkQE~~ 116 (177)
T TIGR00696 38 EELCQRAGKEKLPIFLY-GGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVGLGCPKQEIW 116 (177)
T ss_pred HHHHHHHHHcCCeEEEE-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEcCCcHhHHH
Confidence 45666777788888888 556666555555552 320011223456777788999999888899998885432222
Q ss_pred H-------hCCeeEEecCchHHH---HhhcCEEEeCCChhHHHHHHHHHHHHHHH
Q 002354 800 A-------SSHIGVAMGGGVGAA---SEVASVVLMGNRLSQLLVALELSRLTMKT 844 (932)
Q Consensus 800 ~-------~A~vgIa~~~~~~~a---~~~ad~vl~~~~~~~i~~~i~~gR~~~~~ 844 (932)
- ...+.+++|.+-|.. +.-|.-...+-+++.+.+++.+=|+..+.
T Consensus 117 ~~~~~~~~~~~v~~gvGg~fd~~aG~~~rAP~w~~~~gLEWlyRl~~eP~R~~R~ 171 (177)
T TIGR00696 117 MRNHRHLKPDAVMIGVGGSFDVFSGLVKRAPRWLMRLGLEWLYRLRMEPWRWKRM 171 (177)
T ss_pred HHHhHHhCCCcEEEEeceeeeecccCcCcCCHHHHHhCchHHHHhhhCcHHHHHh
Confidence 1 134555555432221 12233334445788888888887775554
No 290
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=26.11 E-value=3.9e+02 Score=25.66 Aligned_cols=57 Identities=11% Similarity=0.091 Sum_probs=40.7
Q ss_pred CEEEEEEEecccccHHHHHHHHHHHhCCC-eE-EEEcCCCH------HHHHHHHHHcCCCCCceecc
Q 002354 708 NMLAGLIYVEDRIRDDAAHVVNSLSSQGI-GV-YMLSGDKK------NSAEYVASLVGIPKDKVLSG 766 (932)
Q Consensus 708 ~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi-~v-~~~TGd~~------~~a~~ia~~~gi~~~~v~~~ 766 (932)
-.++|+-.+.-.--+..+++++.|+++|+ .+ +++-|-.. ..-+.-.+++|++ .+|..
T Consensus 51 adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~--~vf~p 115 (128)
T cd02072 51 ADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFD--RVFAP 115 (128)
T ss_pred CCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCC--EEECc
Confidence 35778777777778899999999999998 44 55555421 2334668889987 67753
No 291
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=25.96 E-value=1.7e+02 Score=24.88 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=34.3
Q ss_pred EEEecccccHHHHHHHHHHHhCCCeEEEEc-CCCHHHHHHHHHHcCCC
Q 002354 713 LIYVEDRIRDDAAHVVNSLSSQGIGVYMLS-GDKKNSAEYVASLVGIP 759 (932)
Q Consensus 713 ~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~T-Gd~~~~a~~ia~~~gi~ 759 (932)
++.+.++.++.+.+..+.|++.|+++.+.. +.+.......|+..|++
T Consensus 6 i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~~~ 53 (91)
T cd00859 6 VVPLGEGALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGAR 53 (91)
T ss_pred EEEcChHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCC
Confidence 345667778889999999999999887643 34666666677777764
No 292
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=25.86 E-value=1.1e+02 Score=30.82 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHhcCCCeeEEEeecCCc-------------------EEEEEeCCCcccc
Q 002354 138 GGCAASVKRILESQPQVSSASVNLTTE-------------------TAIVWPVSKAKVI 177 (932)
Q Consensus 138 ~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~-------------------~~~V~~~~~~~~~ 177 (932)
.+|=|.+|.+..+++||...+|-++.+ .++|.|||...+-
T Consensus 31 ~GCFWg~E~a~~~l~gV~~T~vGYagG~~~nPtYk~vc~~tT~HaEvvrV~ydpk~~sy 89 (191)
T KOG1635|consen 31 AGCFWGVELAYQRLPGVVRTEVGYAGGITDNPTYKDVCSGTTNHAEVVRVQYDPKVISY 89 (191)
T ss_pred ccchhhHHHHHhhcCCeEEEeecccCCccCCcchhhhccCCCCcceEEEEEeCcccccH
Confidence 478999999999999999999977644 3678888887765
No 293
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.77 E-value=1.5e+02 Score=32.49 Aligned_cols=67 Identities=19% Similarity=0.299 Sum_probs=45.9
Q ss_pred ecccccHHHHHHHHHHHhCCCe---EEEEcCCCHHHH------HHHHHHcCCCCCcee--cccChhhHHHHHHHHhhC
Q 002354 716 VEDRIRDDAAHVVNSLSSQGIG---VYMLSGDKKNSA------EYVASLVGIPKDKVL--SGVKPNEKKRFINELQND 782 (932)
Q Consensus 716 l~D~lr~~~~~~i~~L~~~Gi~---v~~~TGd~~~~a------~~ia~~~gi~~~~v~--~~~~p~~K~~~v~~l~~~ 782 (932)
+.++++++.++.++.|++.|++ .++..||++... ...|+++||..+.+. ...+.++-.+.|+.|.+.
T Consensus 10 iA~~i~~~ik~~i~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (284)
T PRK14170 10 LAKEIQEKVTREVAELVKEGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNED 87 (284)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567899999999999988876 456779888765 446888999643221 223444556666666554
No 294
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=25.74 E-value=2.7e+02 Score=28.70 Aligned_cols=67 Identities=13% Similarity=0.252 Sum_probs=46.8
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEcCCCH-----HHHHHHHHHcCCCCCceecccChhhHHHHHHHHhhCCCEEEEE
Q 002354 719 RIRDDAAHVVNSLSSQGIGVYMLSGDKK-----NSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMV 789 (932)
Q Consensus 719 ~lr~~~~~~i~~L~~~Gi~v~~~TGd~~-----~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~v 789 (932)
...++..+.++++++.|++ .+++||+. .-.+.+++++|+. .+.-+=-.+-.++++.+-+.|..+..+
T Consensus 72 ~~~~~l~~~l~~~~~~g~~-~vv~G~i~sd~~~~~~e~~~~~~gl~---~~~PLW~~~~~~ll~e~~~~g~~~~iv 143 (194)
T cd01994 72 DEVEDLKELLRKLKEEGVD-AVVFGAILSEYQRTRVERVCERLGLE---PLAPLWGRDQEELLREMIEAGFKAIII 143 (194)
T ss_pred HHHHHHHHHHHHHHHcCCC-EEEECccccHHHHHHHHHHHHHcCCE---EEecccCCCHHHHHHHHHHcCCeEEEE
Confidence 3446777788888877776 68899986 4557899999995 443333334446888888888765553
No 295
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=25.35 E-value=2.5e+02 Score=31.98 Aligned_cols=107 Identities=17% Similarity=0.215 Sum_probs=63.2
Q ss_pred ecccccHHHHHHHHHHHhCCCeEEEEcCCC-----HHHHHHHHHHcCCCCCceecccChhhHHHHHHHHhhCCCEEEEEc
Q 002354 716 VEDRIRDDAAHVVNSLSSQGIGVYMLSGDK-----KNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVG 790 (932)
Q Consensus 716 l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~-----~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vG 790 (932)
+.-...++....+..++++||+++.-+|-. ....++++++.|+. .-.+-+.-++-...++.+.++|..+--..
T Consensus 52 Y~~~~~~~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~Gl~--lkvA~V~gDd~~~~v~~~~~~g~~~~~l~ 129 (362)
T PF07287_consen 52 YAPDFVRDLRPLLPAAAEKGIKVITNAGGLNPAGCADIVREIARELGLS--LKVAVVYGDDLKDEVKELLAEGETIRPLD 129 (362)
T ss_pred chHHHHHHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhcCCC--eeEEEEECccchHhHHHHHhCCCCCccCC
Confidence 344456688899999999999999988753 23457789999997 22344445555556665555665333333
Q ss_pred CCcccHHHHHhCCeeEE--ec-C-chHHHHhhcCEEEeC
Q 002354 791 DGINDAAALASSHIGVA--MG-G-GVGAASEVASVVLMG 825 (932)
Q Consensus 791 Dg~ND~~al~~A~vgIa--~~-~-~~~~a~~~ad~vl~~ 825 (932)
.+. +......--+.+. || . =.+..++-||||+..
T Consensus 130 ~~~-~l~~~~~~~~~a~aylGa~pI~~AL~~GADIVI~G 167 (362)
T PF07287_consen 130 TGP-PLSEWDDRIVSANAYLGAEPIVEALEAGADIVITG 167 (362)
T ss_pred CCC-CcchhccccceEEEecChHHHHHHHHcCCCEEEeC
Confidence 332 3333222122222 23 1 123445569999984
No 296
>PF03120 DNA_ligase_OB: NAD-dependent DNA ligase OB-fold domain; InterPro: IPR004150 DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This family is a small domain found after the adenylation domain DNA_ligase_N in NAD+-dependent ligases (IPR001679 from INTERPRO). OB-fold domains generally are involved in nucleic acid binding.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 2OWO_A 1TAE_A 3UQ8_A 1DGS_A 1V9P_B 3SGI_A.
Probab=25.32 E-value=35 Score=30.03 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=16.3
Q ss_pred EeCCCccCCCEEEE-cCCCEEee
Q 002354 380 VPCNSLHVGDHIVV-LPGDRIPA 401 (932)
Q Consensus 380 V~~~~Lv~GDiV~v-~~Ge~IPa 401 (932)
+.-.+|.+||.|.| +.||.||-
T Consensus 45 i~~~~i~~Gd~V~V~raGdVIP~ 67 (82)
T PF03120_consen 45 IKELDIRIGDTVLVTRAGDVIPK 67 (82)
T ss_dssp HHHTT-BBT-EEEEEEETTTEEE
T ss_pred HHHcCCCCCCEEEEEECCCccce
Confidence 44578999999988 66999995
No 297
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=25.26 E-value=75 Score=36.41 Aligned_cols=11 Identities=36% Similarity=0.314 Sum_probs=5.3
Q ss_pred ccccchhhhcc
Q 002354 47 PFASLSRRKFS 57 (932)
Q Consensus 47 ~~~~~~~~~~~ 57 (932)
|+++++---||
T Consensus 36 ~~a~~~~~~~~ 46 (641)
T KOG3915|consen 36 PPASSGPTLFR 46 (641)
T ss_pred CccccCccccC
Confidence 35555544444
No 298
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.01 E-value=8.5e+02 Score=25.89 Aligned_cols=120 Identities=21% Similarity=0.277 Sum_probs=0.0
Q ss_pred EEecccc---cHHHHHHHHHHHhCCCeEEEEcCC--CHHHHHHHHHHcCCCCCceecccChh-------hHHHHHHHHhh
Q 002354 714 IYVEDRI---RDDAAHVVNSLSSQGIGVYMLSGD--KKNSAEYVASLVGIPKDKVLSGVKPN-------EKKRFINELQN 781 (932)
Q Consensus 714 i~l~D~l---r~~~~~~i~~L~~~Gi~v~~~TGd--~~~~a~~ia~~~gi~~~~v~~~~~p~-------~K~~~v~~l~~ 781 (932)
+.+.|-+ -++..+.++.+++.|++++++-.- +.+..+.+++...- -++....|. +-.+.++.+++
T Consensus 105 vii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~---~l~msv~~~~g~~~~~~~~~~i~~lr~ 181 (244)
T PRK13125 105 VLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPL---FIYYGLRPATGVPLPVSVERNIKRVRN 181 (244)
T ss_pred EEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCC---EEEEEeCCCCCCCchHHHHHHHHHHHH
Q ss_pred CC-CEEEEEcCCc---ccHHHHHhCCe-eEEecCchHHHHhhcCEEEeCCChhHHHHHHHHHHHHHH
Q 002354 782 DE-NVVAMVGDGI---NDAAALASSHI-GVAMGGGVGAASEVASVVLMGNRLSQLLVALELSRLTMK 843 (932)
Q Consensus 782 ~g-~~v~~vGDg~---ND~~al~~A~v-gIa~~~~~~~a~~~ad~vl~~~~~~~i~~~i~~gR~~~~ 843 (932)
.. .....+|=|+ +|+..+..+++ |+-+|++--...+..| .....+.++.-|...+
T Consensus 182 ~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~~~~~~~-------~~~~~~~~~~~~~~~~ 241 (244)
T PRK13125 182 LVGNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIEELEKNG-------VESALNLLKKIRGALD 241 (244)
T ss_pred hcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHHHHHhcC-------HHHHHHHHHHHHHHhh
No 299
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=24.62 E-value=5e+02 Score=26.41 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhCCCeEEE--EcCCCHHHHHHHHHHcCCC
Q 002354 722 DDAAHVVNSLSSQGIGVYM--LSGDKKNSAEYVASLVGIP 759 (932)
Q Consensus 722 ~~~~~~i~~L~~~Gi~v~~--~TGd~~~~a~~ia~~~gi~ 759 (932)
....+.++.+++.|+++.+ ++=++...+.. +.+.|.+
T Consensus 90 ~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~-~~~~~~d 128 (202)
T cd04726 90 STIKKAVKAAKKYGKEVQVDLIGVEDPEKRAK-LLKLGVD 128 (202)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHH-HHHCCCC
Confidence 3567889999999999875 67777777776 6667775
No 300
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=24.52 E-value=2.8e+02 Score=32.35 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecccC--hhhH---HHHHHHHhhCCCE
Q 002354 722 DDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGVK--PNEK---KRFINELQNDENV 785 (932)
Q Consensus 722 ~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~~~--p~~K---~~~v~~l~~~g~~ 785 (932)
+...+.=++|++.|+..++..|+.......++++.++. .|++... |..+ ..+.+.+++.|-.
T Consensus 61 esL~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~~--~V~~~~~~~~~~~~rd~~v~~~l~~~~i~ 127 (429)
T TIGR02765 61 ESLKDLRTSLRKLGSDLLVRSGKPEDVLPELIKELGVR--TVFLHQEVGSEEKSVERLLQQALARLGIH 127 (429)
T ss_pred HHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCCC--EEEEeccCCHHHHHHHHHHHHHHHhcCce
Confidence 44555567888899999999999999999999999997 7877644 4333 2344445555544
No 301
>PTZ00146 fibrillarin; Provisional
Probab=24.32 E-value=74 Score=35.06 Aligned_cols=7 Identities=14% Similarity=0.183 Sum_probs=3.5
Q ss_pred eeEEEEe
Q 002354 401 ADGVVRA 407 (932)
Q Consensus 401 aDgvll~ 407 (932)
+|.++.+
T Consensus 203 vDvV~~D 209 (293)
T PTZ00146 203 VDVIFAD 209 (293)
T ss_pred CCEEEEe
Confidence 4555444
No 302
>PLN02645 phosphoglycolate phosphatase
Probab=23.97 E-value=1.9e+02 Score=32.15 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=37.0
Q ss_pred HHHHHhhCCCEEEEEcCCc-ccHHHHHhCCee-EEe--cCch-HHHH-----hhcCEEEeCCChhHHHHHH
Q 002354 775 FINELQNDENVVAMVGDGI-NDAAALASSHIG-VAM--GGGV-GAAS-----EVASVVLMGNRLSQLLVAL 835 (932)
Q Consensus 775 ~v~~l~~~g~~v~~vGDg~-ND~~al~~A~vg-Ia~--~~~~-~~a~-----~~ad~vl~~~~~~~i~~~i 835 (932)
..+.+.-....++||||.. +|+.+-+.|++- |.+ |..+ +... ..+|+++ +++..+.+++
T Consensus 239 a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~--~~~~~l~~~~ 307 (311)
T PLN02645 239 LANKFGIEKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYT--SKISDFLTLK 307 (311)
T ss_pred HHHHcCCCcccEEEEcCCcHHHHHHHHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEE--CCHHHHHHHh
Confidence 3444444567899999997 999999999965 333 3222 2222 2467777 4666665543
No 303
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=23.86 E-value=5.6e+02 Score=28.89 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=68.4
Q ss_pred EEEEEEecccccHHHHH-HHHHHHhCCCeEEEEcCCCHHHH---------HHHHHHcCCCCCceecccCh---------h
Q 002354 710 LAGLIYVEDRIRDDAAH-VVNSLSSQGIGVYMLSGDKKNSA---------EYVASLVGIPKDKVLSGVKP---------N 770 (932)
Q Consensus 710 ~lG~i~l~D~lr~~~~~-~i~~L~~~Gi~v~~~TGd~~~~a---------~~ia~~~gi~~~~v~~~~~p---------~ 770 (932)
.+|+.+.--.=+....+ .+..|++.|.+|.+++.|+...- .. .++++-++ .+|.+..+ .
T Consensus 58 ~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r-~~~~~~~~-~~~~r~~~~~~~l~~~a~ 135 (332)
T PRK09435 58 RIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTR-MERLSRHP-NAFIRPSPSSGTLGGVAR 135 (332)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhH-HHhhcCCC-CeEEEecCCcccccchHH
Confidence 45655555555555344 45677888999999999875541 11 12233322 34544422 2
Q ss_pred hHHHHHHHHhhCCCEEEE---EcCCcccHHHHHhCCeeEEec---CchHH------HHhhcCEEEeC
Q 002354 771 EKKRFINELQNDENVVAM---VGDGINDAAALASSHIGVAMG---GGVGA------ASEVASVVLMG 825 (932)
Q Consensus 771 ~K~~~v~~l~~~g~~v~~---vGDg~ND~~al~~A~vgIa~~---~~~~~------a~~~ad~vl~~ 825 (932)
.-.+.++.+...|..+.+ +|.|.........||+-+-+- .|.+. ..+.+|+++.+
T Consensus 136 ~~~~~~~~~~~~g~d~viieT~Gv~qs~~~i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~aDIiVVN 202 (332)
T PRK09435 136 KTRETMLLCEAAGYDVILVETVGVGQSETAVAGMVDFFLLLQLPGAGDELQGIKKGIMELADLIVIN 202 (332)
T ss_pred HHHHHHHHHhccCCCEEEEECCCCccchhHHHHhCCEEEEEecCCchHHHHHHHhhhhhhhheEEee
Confidence 235666777777876666 488877777889999987662 33332 23457877764
No 304
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=23.81 E-value=1.3e+02 Score=30.18 Aligned_cols=56 Identities=18% Similarity=0.154 Sum_probs=41.3
Q ss_pred hhhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeCCCccccchhhhhhHHHHHHHHHhc
Q 002354 138 GGCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAKVIPNWQRQLGEALAKHLTSC 195 (932)
Q Consensus 138 ~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~~~~~~~~~~~~~~~~~i~~~i~~~ 195 (932)
..=+..|++.+.+++||+++.|-...+.+.|-++.+.. ....+.+..++.+++++.
T Consensus 74 ~~~a~~i~~~v~~~~~V~~A~vvv~~~~a~Vav~~~~~--~~~~~~i~~~V~~~v~~~ 129 (177)
T PF09580_consen 74 QQLADRIANRVKKVPGVEDATVVVTDDNAYVAVDLDFN--RFNTKKIKKKVEKAVKSA 129 (177)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEECCEEEEEEEeccc--ccchhHHHHHHHHHHHHh
Confidence 45678999999999999999999999999998776621 112234445666666653
No 305
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.55 E-value=5e+02 Score=28.51 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=35.6
Q ss_pred ccChhhHHHHHHHHhh--CCCEEEEEcCC-cccHH---HHHh--CCeeEEecCchH--HHHhhcCEEEeCC
Q 002354 766 GVKPNEKKRFINELQN--DENVVAMVGDG-INDAA---ALAS--SHIGVAMGGGVG--AASEVASVVLMGN 826 (932)
Q Consensus 766 ~~~p~~K~~~v~~l~~--~g~~v~~vGDg-~ND~~---al~~--A~vgIa~~~~~~--~a~~~ad~vl~~~ 826 (932)
-++|..=.++++.+.- +|..|..+|.+ .-=-| +|.. |.|-++-....+ .....||+++..-
T Consensus 133 PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~Av 203 (279)
T PRK14178 133 PCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVSAA 203 (279)
T ss_pred CCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHHhhCCEEEECC
Confidence 3556555555555432 48899999998 33444 5544 445555443322 3346799988743
No 306
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.15 E-value=2e+02 Score=31.59 Aligned_cols=67 Identities=24% Similarity=0.274 Sum_probs=46.1
Q ss_pred ecccccHHHHHHHHHHHhCCCeE---EEEcCCCHHHH------HHHHHHcCCCCCcee--cccChhhHHHHHHHHhhC
Q 002354 716 VEDRIRDDAAHVVNSLSSQGIGV---YMLSGDKKNSA------EYVASLVGIPKDKVL--SGVKPNEKKRFINELQND 782 (932)
Q Consensus 716 l~D~lr~~~~~~i~~L~~~Gi~v---~~~TGd~~~~a------~~ia~~~gi~~~~v~--~~~~p~~K~~~v~~l~~~ 782 (932)
+.++++++.++-+++|++.|+++ +++-||++... ...|+++||..+.+. ...+.++-.+.|+.|.+.
T Consensus 11 va~~i~~~lk~~i~~l~~~g~~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 88 (285)
T PRK14189 11 LSKQLRAEAAQRAAALTARGHQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRD 88 (285)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 45678999999999999888763 55668887665 446788998643322 224456666777777654
No 307
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=22.67 E-value=1.4e+02 Score=37.95 Aligned_cols=66 Identities=17% Similarity=0.112 Sum_probs=49.5
Q ss_pred HHHhCCCeEEEEEECCEEEEEEEec-----ccccHHHHHHHHHHHhC-CCeEEEEcCCCHHHHHHHHHHcCC
Q 002354 693 MEDLMNQSLVYVGVDNMLAGLIYVE-----DRIRDDAAHVVNSLSSQ-GIGVYMLSGDKKNSAEYVASLVGI 758 (932)
Q Consensus 693 ~~~~~g~~~~~va~~~~~lG~i~l~-----D~lr~~~~~~i~~L~~~-Gi~v~~~TGd~~~~a~~ia~~~gi 758 (932)
.+.....+.+++.+||++.....-. -.+.++..++++.|.+. +..|+++||+...........+++
T Consensus 501 ~y~~a~~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~~~l 572 (797)
T PLN03063 501 QYSKSNNRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGEYNI 572 (797)
T ss_pred HHHhccCeEEEEecCccccCCCCCccccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCCCCC
Confidence 3445567889999999998532211 12678899999999865 678999999999998888765443
No 308
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=22.67 E-value=3.6e+02 Score=24.86 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=47.7
Q ss_pred EEEecccccHHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecccChh-hHHHHHHHHhhCCCE--EEEE
Q 002354 713 LIYVEDRIRDDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGVKPN-EKKRFINELQNDENV--VAMV 789 (932)
Q Consensus 713 ~i~l~D~lr~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~~~p~-~K~~~v~~l~~~g~~--v~~v 789 (932)
++.+.|.-+++..+.+++|.+.|+++ ..|+ .|+..+. +.|++-..+.. . ++ ...++...++++|+. |..+
T Consensus 3 ~isv~d~~K~~~~~~a~~l~~~G~~i-~AT~---gTa~~L~-~~Gi~~~~v~~-~-~~~g~~~i~~~i~~~g~idlVIn~ 75 (112)
T cd00532 3 FLSVSDHVKAMLVDLAPKLSSDGFPL-FATG---GTSRVLA-DAGIPVRAVSK-R-HEDGEPTVDAAIAEKGKFDVVINL 75 (112)
T ss_pred EEEEEcccHHHHHHHHHHHHHCCCEE-EECc---HHHHHHH-HcCCceEEEEe-c-CCCCCcHHHHHHhCCCCEEEEEEc
Confidence 56788999999999999999999997 4775 3565555 48886433321 1 12 234566666552443 3333
Q ss_pred cCCcc
Q 002354 790 GDGIN 794 (932)
Q Consensus 790 GDg~N 794 (932)
=|+.+
T Consensus 76 ~~~~~ 80 (112)
T cd00532 76 RDPRR 80 (112)
T ss_pred CCCCc
Confidence 45444
No 309
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=22.62 E-value=3.2e+02 Score=27.39 Aligned_cols=72 Identities=28% Similarity=0.390 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHHhCCCe--EEEEcC--CCHHHHHHHHHHcCCCCCceecccChhhH-HHHHHHHhhCC---CEEEEEcCC
Q 002354 721 RDDAAHVVNSLSSQGIG--VYMLSG--DKKNSAEYVASLVGIPKDKVLSGVKPNEK-KRFINELQNDE---NVVAMVGDG 792 (932)
Q Consensus 721 r~~~~~~i~~L~~~Gi~--v~~~TG--d~~~~a~~ia~~~gi~~~~v~~~~~p~~K-~~~v~~l~~~g---~~v~~vGDg 792 (932)
+.++..+=+.|++.|+. -+++|. +..+|++.+++.+|.....++.+..|..- ..+++.+++.+ ..|+.||-.
T Consensus 31 ~~ea~~~a~~L~~~~~~~D~VL~Spa~Ra~QTae~v~~~~~~~~~~~~~~l~p~~d~~~~l~~l~~~~d~v~~vllVgH~ 110 (163)
T COG2062 31 RKEAELVAAWLAGQGVEPDLVLVSPAVRARQTAEIVAEHLGEKKVEVFEELLPNGDPGTVLDYLEALGDGVGSVLLVGHN 110 (163)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEeChhHHHHHHHHHHHHhhCcccceeccccCCCCCHHHHHHHHHHhcccCceEEEECCC
Confidence 56777888999999984 566664 47789999999999654567777777543 34444555443 367777764
No 310
>PRK09479 glpX fructose 1,6-bisphosphatase II; Reviewed
Probab=22.37 E-value=2.7e+02 Score=30.83 Aligned_cols=72 Identities=22% Similarity=0.363 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCCCCcee-cccChhhHHHHHHHHhhCCCEEEEEcCCcccHH-HHHhC----CeeEEe--cCchHHHHhh
Q 002354 747 NSAEYVASLVGIPKDKVL-SGVKPNEKKRFINELQNDENVVAMVGDGINDAA-ALASS----HIGVAM--GGGVGAASEV 818 (932)
Q Consensus 747 ~~a~~ia~~~gi~~~~v~-~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~-al~~A----~vgIa~--~~~~~~a~~~ 818 (932)
+..+.+|+.+|...+++- +-+.-..-.++|+++++.|.+|-.+.|| |+. ++..+ ++=+-| |.+.+-+..+
T Consensus 143 eNl~~~A~algk~v~dltV~vLdRpRH~~lI~eiR~~Gari~Li~DG--DVa~ai~~~~~~s~vD~~~GiGGaPEGVlaA 220 (319)
T PRK09479 143 ENLRAVAKALGKDVSDLTVVVLDRPRHEELIAEIREAGARVKLISDG--DVAGAIATAFPDTGVDILMGIGGAPEGVLAA 220 (319)
T ss_pred HHHHHHHHHcCCChhHeEEEEEcCchHHHHHHHHHHcCCeEEEeccc--cHHHHHHHhcCCCCeeEEEEcCcChHHHHHH
Confidence 344455555554332221 2223333457999999999999999999 663 44444 333334 4555555555
Q ss_pred cC
Q 002354 819 AS 820 (932)
Q Consensus 819 ad 820 (932)
|-
T Consensus 221 aA 222 (319)
T PRK09479 221 AA 222 (319)
T ss_pred HH
Confidence 43
No 311
>PRK06381 threonine synthase; Validated
Probab=22.25 E-value=2.6e+02 Score=31.16 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCCeEEE--EcCCCHHHHHHHHHHcCCCCCceecccChhhHHHHHHHHhhCCCEEEEEcCCcccH
Q 002354 723 DAAHVVNSLSSQGIGVYM--LSGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDGINDA 796 (932)
Q Consensus 723 ~~~~~i~~L~~~Gi~v~~--~TGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~ 796 (932)
.+...+..+++.|.+.++ -||..-.....+|+.+|++-..+...-.|+.|. +.++..|..|..+++..+|.
T Consensus 50 ~a~~~l~~a~~~g~~~lv~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~---~~l~~~GA~V~~~~~~~~~~ 122 (319)
T PRK06381 50 IAEAHVRRAMRLGYSGITVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRV---KEMEKYGAEIIYVDGKYEEA 122 (319)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHH---HHHHHcCCEEEEcCCCHHHH
Confidence 456777788888876544 456666677788899999753444444555554 45667899999998755443
No 312
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=21.93 E-value=3.3e+02 Score=35.27 Aligned_cols=184 Identities=13% Similarity=0.087 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhccCCC------------eEEEEEecCCCCcEEEEeCCCccCCCEEEEcCCCEEeee
Q 002354 335 FVLLGKNLEQRAKIKATSDMTGLLGILPS------------KARLLVDNDAKDSIIEVPCNSLHVGDHIVVLPGDRIPAD 402 (932)
Q Consensus 335 ~~llg~~le~~~~~ka~~~l~~L~~~~p~------------~~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~~Ge~IPaD 402 (932)
-.+++.+.|. ...++.++++++...... ...+-.++=.-|....+..-|.+|-|.++++. +-+-+|
T Consensus 124 ~~~i~~~qe~-~a~~a~~~L~~l~~~~~~V~Rdg~~~~~g~~~~I~~~eLv~GDiV~l~~Gd~IPaDg~li~g-~~l~VD 201 (903)
T PRK15122 124 SGLLRFWQEF-RSNKAAEALKAMVRTTATVLRRGHAGAEPVRREIPMRELVPGDIVHLSAGDMIPADVRLIES-RDLFIS 201 (903)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhccCCceEEEECCccCCCCeEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEc-CceEEE
Confidence 3344444444 455677778777543321 12221111123578889999999999888864 345567
Q ss_pred EEEEeeeeE-Eeccc------------cccCCCce-----eecCCCccccceeeecCcEEE----------EEEecCCcc
Q 002354 403 GVVRAGRST-VDESS------------FTGEPLPV-----TKIPESEVAAGSINLNGTLTV----------EVRRPGGET 454 (932)
Q Consensus 403 gvll~G~~~-VDES~------------LTGES~Pv-----~K~~g~~V~aGt~v~~G~~~~----------~V~~tG~~T 454 (932)
=-.+.|++. |+-.. ..++..+. .-..|..|..|+...-=..++ .+...-..|
T Consensus 202 ES~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG~~T~~gkI~~~v~~~~~~t 281 (903)
T PRK15122 202 QAVLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATGSRTYFGSLAKSIVGTRAQT 281 (903)
T ss_pred ccccCCCCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeEEEEEEEeccccHhhHHHHHhcCCCCCC
Confidence 666666642 22221 11222111 235677777776433211111 122222223
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcccchhccCCcHHHHHHHHHHHHHHHhhh
Q 002354 455 AMGDIVRLVEEAQSREAPVQRLADQVSGHFTYGVIALSAATFVFWNLFGAHVLPTAIQYGGPVSLALQLSCSVLVVACPC 534 (932)
Q Consensus 455 ~~gki~~~v~~a~~~~~~lq~~~d~~~~~~~~~vl~la~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ai~vLvva~P~ 534 (932)
.+.+-+ .++.+.+.+++.++++++++++.+...-|.- .+..++..++...-.+.|.
T Consensus 282 ~l~~~l----------~~i~~~l~~~~~~~~~~v~~~~~~~~~~~~~--------------~l~~aisl~V~~~Pe~Lp~ 337 (903)
T PRK15122 282 AFDRGV----------NSVSWLLIRFMLVMVPVVLLINGFTKGDWLE--------------ALLFALAVAVGLTPEMLPM 337 (903)
T ss_pred cHHHHH----------HHHHHHHHHHHHHHHHHhhhhhhhccCCHHH--------------HHHHHHHHHHHHccchHHH
Confidence 332211 2356777888888887777665433211110 0122344455555555555
Q ss_pred cchhhHHHHH
Q 002354 535 ALGLATPTAM 544 (932)
Q Consensus 535 aL~la~p~a~ 544 (932)
++++++..+.
T Consensus 338 ~vt~~La~g~ 347 (903)
T PRK15122 338 IVSSNLAKGA 347 (903)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 313
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=21.92 E-value=3.5e+02 Score=32.07 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCceecccC--hhh---HHHHHHHHhhCCCEE
Q 002354 722 DDAAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLVGIPKDKVLSGVK--PNE---KKRFINELQNDENVV 786 (932)
Q Consensus 722 ~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~gi~~~~v~~~~~--p~~---K~~~v~~l~~~g~~v 786 (932)
+...+.=+.|++.|++.++..|+.......++++.++. .|++... |.. -.++.+.+++.|-.|
T Consensus 55 esL~~L~~~L~~~G~~L~v~~G~p~~vl~~l~~~~~~~--~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~ 122 (471)
T TIGR03556 55 GCLQELQQRYQQAGSQLLILQGDPVQLIPQLAQQLGAK--AVYWNLDVEPYGRKRDRAVAAALKEAGIAV 122 (471)
T ss_pred HHHHHHHHHHHHCCCCeEEEECCHHHHHHHHHHHcCCC--EEEEecccCHHHHHHHHHHHHHHHHCCCEE
Confidence 44555556888999999999999999999999999997 6776543 322 234555666666544
No 314
>PRK06450 threonine synthase; Validated
Probab=21.84 E-value=2.9e+02 Score=31.18 Aligned_cols=73 Identities=19% Similarity=0.200 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhCCCe-EEEEc-CCCHHHHHHHHHHcCCCCCceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHHH
Q 002354 723 DAAHVVNSLSSQGIG-VYMLS-GDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAAA 798 (932)
Q Consensus 723 ~~~~~i~~L~~~Gi~-v~~~T-Gd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~a 798 (932)
++.-.|.++++.|.+ |+..| |+.-.....+|+.+|++-..+.-+-.|..|.+.++ ..|..|..++....|+..
T Consensus 84 ga~~~i~~a~~~g~~~vv~aSsGN~g~slA~~aa~~G~~~~i~vP~~~~~~k~~~i~---~~GA~vi~v~~~~~~~~~ 158 (338)
T PRK06450 84 GSVTLISYLAEKGIKQISEDSSGNAGASIAAYGAAAGIEVKIFVPETASGGKLKQIE---SYGAEVVRVRGSREDVAK 158 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHH---HcCCEEEEECCCHHHHHH
Confidence 455677788888876 45555 65566778899999997544555556777766554 568899999877666433
No 315
>COG4278 Uncharacterized conserved protein [Function unknown]
Probab=21.83 E-value=88 Score=32.82 Aligned_cols=11 Identities=36% Similarity=0.667 Sum_probs=4.4
Q ss_pred cccccccccCC
Q 002354 70 CMSSCAASFGA 80 (932)
Q Consensus 70 ~~~~~~~~~~~ 80 (932)
|.|-+..-||+
T Consensus 221 cgS~gg~~~gs 231 (269)
T COG4278 221 CGSYGGKNFGS 231 (269)
T ss_pred ccccccCCcCC
Confidence 44433333443
No 316
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.77 E-value=2.1e+02 Score=31.55 Aligned_cols=67 Identities=22% Similarity=0.318 Sum_probs=45.3
Q ss_pred ecccccHHHHHHHHHHHhCCCeE---EEEcCCCHHHH------HHHHHHcCCCCCcee--cccChhhHHHHHHHHhhC
Q 002354 716 VEDRIRDDAAHVVNSLSSQGIGV---YMLSGDKKNSA------EYVASLVGIPKDKVL--SGVKPNEKKRFINELQND 782 (932)
Q Consensus 716 l~D~lr~~~~~~i~~L~~~Gi~v---~~~TGd~~~~a------~~ia~~~gi~~~~v~--~~~~p~~K~~~v~~l~~~ 782 (932)
+.++++++.++.++.|++.|+++ +++-||++... ...|+++||..+.+. ...+.++-.+.|+.|.+.
T Consensus 11 ia~~i~~~~~~~v~~l~~~g~~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 88 (286)
T PRK14175 11 IAKDYRQGLQDQVEALKEKGFTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNND 88 (286)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45678999999999999888764 55678888765 446788998643221 223344556666666554
No 317
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.57 E-value=2.1e+02 Score=31.44 Aligned_cols=67 Identities=21% Similarity=0.257 Sum_probs=45.4
Q ss_pred ecccccHHHHHHHHHHHhCCCe---EEEEcCCCHHHH------HHHHHHcCCCCCcee--cccChhhHHHHHHHHhhC
Q 002354 716 VEDRIRDDAAHVVNSLSSQGIG---VYMLSGDKKNSA------EYVASLVGIPKDKVL--SGVKPNEKKRFINELQND 782 (932)
Q Consensus 716 l~D~lr~~~~~~i~~L~~~Gi~---v~~~TGd~~~~a------~~ia~~~gi~~~~v~--~~~~p~~K~~~v~~l~~~ 782 (932)
+.++++++.++.++.|++.|++ .+++-||++... ...|+++||..+.+. ...+.++-.+.++.|.+.
T Consensus 9 va~~i~~~l~~~v~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 86 (282)
T PRK14169 9 VSKKILADLKQTVAKLAQQDVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHD 86 (282)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567899999999999988876 356678888765 446888999643221 223344556666666554
No 318
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=21.36 E-value=1.9e+02 Score=23.76 Aligned_cols=54 Identities=20% Similarity=0.227 Sum_probs=38.9
Q ss_pred EEecCCCChhhHHHHHHHHhcCCCeeEEEeecCCcEEEEEeCCCccccchhhhhhHHHHHHHHHhcCccccc
Q 002354 130 LDVGGMTCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVSKAKVIPNWQRQLGEALAKHLTSCGFKSSL 201 (932)
Q Consensus 130 l~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~~~~V~~~~~~~~~~~~~~~~~~~i~~~i~~~Gy~~~~ 201 (932)
++..|+.|+.=...+.++|++++. .+.+.|..|... .. +.+.+.+++.||....
T Consensus 2 lD~rg~~CP~Pl~~~~~~l~~l~~---------g~~l~v~~d~~~-~~--------~~i~~~~~~~g~~~~~ 55 (69)
T cd00291 2 LDLRGLPCPLPVLKTKKALEKLKS---------GEVLEVLLDDPG-AV--------EDIPAWAKETGHEVLE 55 (69)
T ss_pred ccccCCcCCHHHHHHHHHHhcCCC---------CCEEEEEecCCc-HH--------HHHHHHHHHcCCEEEE
Confidence 578899999988899999988653 233455555433 22 6788999999999643
No 319
>PHA02669 hypothetical protein; Provisional
Probab=21.10 E-value=1.9e+02 Score=28.51 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=29.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHH-HHhHHHHHhhhc
Q 002354 296 MNTLVGLGAVSSFTVSSLAALVPKLGWKAFFEEPIMLIAFVLLGKNLEQRAK-IKATSDMTGLLG 359 (932)
Q Consensus 296 md~Li~l~~~~a~~~s~~~~~~~~~~~~~yf~~~~~il~~~llg~~le~~~~-~ka~~~l~~L~~ 359 (932)
|..|+.++++.+.++ .+++.|-+++-+|-..|...+ .|..+.|++|..
T Consensus 1 m~~LVii~iIvavi~----------------LTgAaiYlLiEiGLAaERanKrsRvK~nMRkLat 49 (210)
T PHA02669 1 MMALVLIGIIVAVIY----------------LTGAAIYLLIEIGLAAERANKRSRVKANMRKLAT 49 (210)
T ss_pred CceeehhHHHHHHHH----------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 667788887766543 244555556667766665443 455566776654
No 320
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=20.97 E-value=1.2e+02 Score=36.41 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHhcCCCeeEEEeecCCc------------------EEEEEeCCCcccc
Q 002354 138 GGCAASVKRILESQPQVSSASVNLTTE------------------TAIVWPVSKAKVI 177 (932)
Q Consensus 138 ~~Ca~~Ie~~L~~~~GV~~~~Vn~~~~------------------~~~V~~~~~~~~~ 177 (932)
++|=|-+|....+++||.+++|=++.+ .+.|.||+..++.
T Consensus 205 gGCFWg~e~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~gtgH~E~V~V~yDp~~is~ 262 (521)
T PRK14018 205 GGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVYRHSGHAETVKVTYDADKLSL 262 (521)
T ss_pred cCCchhhHHHHccCCCEEEEEEeeCCCCCCCCChhhccCCCCcEEEEEEEECCCcCcH
Confidence 489999999999999999999877554 3788999998876
No 321
>PRK08813 threonine dehydratase; Provisional
Probab=20.84 E-value=2.8e+02 Score=31.47 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhCCCe--EEEE-cCCCHHHHHHHHHHcCCCCCceecccChhhHHHHHHHHhhCCCEEEEEcCCcccHH
Q 002354 723 DAAHVVNSLSSQGIG--VYML-SGDKKNSAEYVASLVGIPKDKVLSGVKPNEKKRFINELQNDENVVAMVGDGINDAA 797 (932)
Q Consensus 723 ~~~~~i~~L~~~Gi~--v~~~-TGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~ 797 (932)
++...|.++.+.|.. ++-. ||.+-......|+.+|++-..+...-.|+.|.+.++ ..|..|..+|++..|+.
T Consensus 67 gA~~~l~~a~~~~~~~~VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~---~~GAeVv~~g~~~~~a~ 141 (349)
T PRK08813 67 GALNALLAGLERGDERPVICASAGNHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVA---HWGATVRQHGNSYDEAY 141 (349)
T ss_pred HHHHHHHHHHHcCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHH---HcCCEEEEECCCHHHHH
Confidence 455667777777754 4434 455666677889999997655555667777777665 45888999988766653
No 322
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=20.80 E-value=2.9e+02 Score=29.71 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHHhCCCeEEEEcCCCH----------HHHHHHHHHcCCCCCce---ecccChhhHHHHHHHHhhCCCEEE
Q 002354 721 RDDAAHVVNSLSSQGIGVYMLSGDKK----------NSAEYVASLVGIPKDKV---LSGVKPNEKKRFINELQNDENVVA 787 (932)
Q Consensus 721 r~~~~~~i~~L~~~Gi~v~~~TGd~~----------~~a~~ia~~~gi~~~~v---~~~~~p~~K~~~v~~l~~~g~~v~ 787 (932)
++-.++-|+.+++.||.+. +|... ..-...++++|++.-++ +-.+++++|.++|+..++.|-+|.
T Consensus 53 ~~~l~eki~l~~~~gV~v~--~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~ 130 (244)
T PF02679_consen 53 EEILKEKIDLAHSHGVYVY--PGGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVL 130 (244)
T ss_dssp CHHHHHHHHHHHCTT-EEE--E-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEE
T ss_pred HHHHHHHHHHHHHcCCeEe--CCcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEe
Confidence 4447888999999998754 56544 44467888999874333 235788999999999999987766
Q ss_pred E-EcCCcccHHHHHhCCeeEEecCchHHHHhhcCEEEeCCC
Q 002354 788 M-VGDGINDAAALASSHIGVAMGGGVGAASEVASVVLMGNR 827 (932)
Q Consensus 788 ~-vGDg~ND~~al~~A~vgIa~~~~~~~a~~~ad~vl~~~~ 827 (932)
. || --|...-..-++.--+.........-||.|+...+
T Consensus 131 ~EvG--~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 169 (244)
T PF02679_consen 131 SEVG--KKDPESDFSLDPEELIEQAKRDLEAGADKVIIEAR 169 (244)
T ss_dssp EEES---SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--T
T ss_pred eccc--CCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeee
Confidence 4 77 23333332222222222233444456888887554
No 323
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=20.58 E-value=77 Score=33.19 Aligned_cols=11 Identities=18% Similarity=0.310 Sum_probs=5.8
Q ss_pred HHHHHHHhcCc
Q 002354 187 ALAKHLTSCGF 197 (932)
Q Consensus 187 ~i~~~i~~~Gy 197 (932)
.+.++...+|-
T Consensus 79 ~f~~~ya~lg~ 89 (263)
T KOG3074|consen 79 DFIEHYAQLGP 89 (263)
T ss_pred HHHHHHHhcCC
Confidence 34555555555
No 324
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=20.41 E-value=3.8e+02 Score=26.92 Aligned_cols=115 Identities=16% Similarity=0.239 Sum_probs=68.9
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHc-----CCCCCceec----ccChhhHHHHHHHHhhCCCEEEEEcCCcc
Q 002354 724 AAHVVNSLSSQGIGVYMLSGDKKNSAEYVASLV-----GIPKDKVLS----GVKPNEKKRFINELQNDENVVAMVGDGIN 794 (932)
Q Consensus 724 ~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~~-----gi~~~~v~~----~~~p~~K~~~v~~l~~~g~~v~~vGDg~N 794 (932)
..+.++.+.+.|.++.++-|+ +..+...++.+ |+. +.. -.++++-.++++.+++.+-.++++|-|.-
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~-~~~~~~~~~~l~~~yP~l~---ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~P 112 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGS-EEVLEKAAANLRRRYPGLR---IVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAP 112 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCC-HHHHHHHHHHHHHHCCCeE---EEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCC
Confidence 456667777788888888554 44444333333 232 211 13567788899999999989999999865
Q ss_pred cHHHHH-------hCCeeEEecCchHHHHh---hcCEEEeCCChhHHHHHHHHHHHHH
Q 002354 795 DAAALA-------SSHIGVAMGGGVGAASE---VASVVLMGNRLSQLLVALELSRLTM 842 (932)
Q Consensus 795 D~~al~-------~A~vgIa~~~~~~~a~~---~ad~vl~~~~~~~i~~~i~~gR~~~ 842 (932)
-=+.+- .+.+.+++|..-|.... -|.-.+..-++..+..++.+=|+.+
T Consensus 113 kQE~~~~~~~~~l~~~v~i~vG~~~d~~aG~~~raP~w~~~~glEWlyRl~~eP~Rl~ 170 (172)
T PF03808_consen 113 KQERWIARHRQRLPAGVIIGVGGAFDFLAGKVKRAPKWMRRLGLEWLYRLLQEPKRLW 170 (172)
T ss_pred HHHHHHHHHHHHCCCCEEEEECchhhhhccCcCccCHHHHHcCcHHHHHHHhChHhhh
Confidence 443332 33477777654333321 2223333446777777777666554
No 325
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=20.37 E-value=2.4e+02 Score=28.54 Aligned_cols=60 Identities=20% Similarity=0.250 Sum_probs=39.1
Q ss_pred eEEEEEECCEEEEEEEecccccHHH-------------------------HHHHHHHHhCCCeEEEEcCCC--HHHHHHH
Q 002354 700 SLVYVGVDNMLAGLIYVEDRIRDDA-------------------------AHVVNSLSSQGIGVYMLSGDK--KNSAEYV 752 (932)
Q Consensus 700 ~~~~va~~~~~lG~i~l~D~lr~~~-------------------------~~~i~~L~~~Gi~v~~~TGd~--~~~a~~i 752 (932)
+...+..|++.+|+|.++-.+-+.. +.++++.++.||+-+++|-|. ..+.+-|
T Consensus 70 ~y~~v~~d~~ivG~i~lRh~Ln~~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASrkvI 149 (174)
T COG3981 70 TYWAVDEDGQIVGFINLRHQLNDFLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNIASRKVI 149 (174)
T ss_pred eEEEEecCCcEEEEEEeeeecchHHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhhHHH
Confidence 3344555789999999987764433 336788888899888888654 4444444
Q ss_pred HHHcCCC
Q 002354 753 ASLVGIP 759 (932)
Q Consensus 753 a~~~gi~ 759 (932)
-+.=|+.
T Consensus 150 ~~NGGil 156 (174)
T COG3981 150 EANGGIL 156 (174)
T ss_pred HhcCCEE
Confidence 4444443
No 326
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=20.32 E-value=5.6e+02 Score=26.55 Aligned_cols=61 Identities=10% Similarity=0.060 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhccC------CCe-EEEEEecCCCCcEEEEeCCCccCCCEEEEc
Q 002354 334 AFVLLGKNLEQRAKIKATSDMTGLLGIL------PSK-ARLLVDNDAKDSIIEVPCNSLHVGDHIVVL 394 (932)
Q Consensus 334 ~~~llg~~le~~~~~ka~~~l~~L~~~~------p~~-~~vir~~~~~g~~~~V~~~~Lv~GDiV~v~ 394 (932)
++..+-++++++.+++..+.++++.... ..+ ..+-..+=..|....+...|.+|-|.+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~~~i~~~~L~~GDiI~l~~g~~vPaD~~ll~ 74 (230)
T PF00122_consen 7 LLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVIRDGRWQKIPSSELVPGDIIILKAGDIVPADGILLE 74 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEEETTEEEEEEGGGT-TTSEEEEETTEBESSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCccEEEEeccccccchHhhccceeeeecccccccccCcccee
Confidence 3334445555555666666665543221 112 222212212356778888888888888888
No 327
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=20.27 E-value=7.9e+02 Score=27.85 Aligned_cols=47 Identities=13% Similarity=-0.048 Sum_probs=37.7
Q ss_pred cEEEEEecCCCChhhHHHHHHHHhcCCCeeEEEeecC--C----cEEEEEeCC
Q 002354 126 DVIILDVGGMTCGGCAASVKRILESQPQVSSASVNLT--T----ETAIVWPVS 172 (932)
Q Consensus 126 ~~~~l~V~GM~C~~Ca~~Ie~~L~~~~GV~~~~Vn~~--~----~~~~V~~~~ 172 (932)
...+|.|.++.-..-...|++.+++...|.++++-.. + +-+.|+|..
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~ 158 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGS 158 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEcc
Confidence 4567899999988888999999999988998887543 2 348898854
Done!