Query 002357
Match_columns 931
No_of_seqs 464 out of 3552
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 22:13:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0948 Nuclear exosomal RNA h 100.0 1E-201 3E-206 1640.9 76.2 886 35-931 95-1041(1041)
2 KOG0947 Cytoplasmic exosomal R 100.0 4E-160 9E-165 1342.6 72.2 865 63-931 284-1248(1248)
3 COG4581 Superfamily II RNA hel 100.0 3E-129 6E-134 1145.3 73.2 875 40-931 89-1041(1041)
4 PRK02362 ski2-like helicase; P 100.0 1.1E-49 2.4E-54 485.9 55.5 367 70-485 16-397 (737)
5 KOG0331 ATP-dependent RNA heli 100.0 1E-49 2.2E-54 442.4 30.7 337 65-496 101-461 (519)
6 PF08148 DSHCT: DSHCT (NUC185) 100.0 5.4E-51 1.2E-55 407.5 15.1 177 752-931 1-180 (180)
7 PRK00254 ski2-like helicase; P 100.0 1.1E-47 2.4E-52 467.1 42.8 375 69-498 15-401 (720)
8 COG1204 Superfamily II helicas 100.0 7.1E-49 1.5E-53 466.9 29.8 376 67-489 21-412 (766)
9 PRK01172 ski2-like helicase; P 100.0 3E-47 6.6E-52 461.6 39.4 365 71-498 17-391 (674)
10 KOG0330 ATP-dependent RNA heli 100.0 7.8E-48 1.7E-52 399.3 25.2 318 72-493 78-414 (476)
11 COG0513 SrmB Superfamily II DN 100.0 1E-46 2.2E-51 438.1 32.2 322 72-494 46-389 (513)
12 PRK11776 ATP-dependent RNA hel 100.0 4.5E-46 9.8E-51 432.9 32.7 314 70-485 19-349 (460)
13 KOG0328 Predicted ATP-dependen 100.0 6.9E-47 1.5E-51 375.8 21.8 328 48-485 31-373 (400)
14 PTZ00110 helicase; Provisional 100.0 5.9E-46 1.3E-50 436.0 32.6 324 65-485 140-484 (545)
15 KOG0338 ATP-dependent RNA heli 100.0 3.9E-46 8.5E-51 397.2 27.5 327 70-497 196-544 (691)
16 PRK10590 ATP-dependent RNA hel 100.0 1.3E-45 2.8E-50 427.1 32.0 312 70-481 16-350 (456)
17 PRK04837 ATP-dependent RNA hel 100.0 8.7E-46 1.9E-50 425.9 29.8 313 71-485 24-362 (423)
18 KOG0952 DNA/RNA helicase MER3/ 100.0 2.5E-45 5.3E-50 420.5 29.8 375 71-512 104-512 (1230)
19 PRK11634 ATP-dependent RNA hel 100.0 1.5E-44 3.3E-49 427.2 37.3 322 70-494 21-360 (629)
20 PRK11192 ATP-dependent RNA hel 100.0 9.1E-45 2E-49 419.4 33.8 313 70-484 16-351 (434)
21 PLN00206 DEAD-box ATP-dependen 100.0 9E-45 2E-49 425.0 33.9 311 71-485 137-475 (518)
22 COG1202 Superfamily II helicas 100.0 2.9E-45 6.3E-50 395.4 26.4 330 63-485 202-553 (830)
23 PRK04537 ATP-dependent RNA hel 100.0 9E-45 2E-49 427.2 32.0 314 70-485 24-364 (572)
24 KOG0345 ATP-dependent RNA heli 100.0 1.5E-44 3.3E-49 383.0 26.9 322 65-482 16-363 (567)
25 PRK01297 ATP-dependent RNA hel 100.0 1.3E-43 2.7E-48 413.4 36.8 314 70-485 102-442 (475)
26 KOG0333 U5 snRNP-like RNA heli 100.0 3.1E-44 6.7E-49 384.5 26.6 331 68-497 258-638 (673)
27 KOG0342 ATP-dependent RNA heli 100.0 2.4E-44 5.1E-49 384.6 25.2 325 65-485 92-439 (543)
28 TIGR03817 DECH_helic helicase/ 100.0 1.5E-43 3.2E-48 427.0 34.9 335 69-484 28-385 (742)
29 PTZ00424 helicase 45; Provisio 100.0 2E-43 4.4E-48 405.1 31.4 316 71-485 44-374 (401)
30 KOG0343 RNA Helicase [RNA proc 100.0 2.5E-43 5.4E-48 378.9 26.2 334 71-505 85-441 (758)
31 KOG0348 ATP-dependent RNA heli 100.0 1.3E-42 2.8E-47 372.5 28.6 360 55-485 137-556 (708)
32 TIGR00614 recQ_fam ATP-depende 100.0 4.6E-42 9.9E-47 398.7 35.6 321 69-497 3-344 (470)
33 PLN03137 ATP-dependent DNA hel 100.0 6.8E-42 1.5E-46 407.2 31.1 322 67-496 450-797 (1195)
34 KOG0326 ATP-dependent RNA heli 100.0 5.5E-43 1.2E-47 353.4 17.5 322 73-493 103-439 (459)
35 PRK13767 ATP-dependent helicas 100.0 1.8E-41 3.8E-46 417.1 34.0 323 74-481 29-396 (876)
36 KOG0340 ATP-dependent RNA heli 100.0 3.2E-42 7E-47 353.5 22.6 326 70-493 22-368 (442)
37 KOG0336 ATP-dependent RNA heli 100.0 4E-42 8.6E-47 357.1 22.7 330 68-495 233-584 (629)
38 KOG0335 ATP-dependent RNA heli 100.0 1.1E-41 2.4E-46 371.6 27.2 335 71-507 90-469 (482)
39 COG1201 Lhr Lhr-like helicases 100.0 7.7E-41 1.7E-45 391.8 33.7 381 65-558 12-422 (814)
40 PRK11057 ATP-dependent DNA hel 100.0 3.1E-40 6.8E-45 393.0 34.5 320 67-496 15-353 (607)
41 TIGR01389 recQ ATP-dependent D 100.0 1.5E-39 3.1E-44 388.7 33.4 319 68-496 4-341 (591)
42 KOG0951 RNA helicase BRR2, DEA 100.0 1.9E-39 4.1E-44 375.6 30.0 359 77-485 310-702 (1674)
43 PRK09751 putative ATP-dependen 100.0 2.4E-39 5.3E-44 402.0 32.2 341 96-485 1-385 (1490)
44 KOG0346 RNA helicase [RNA proc 100.0 4.5E-39 9.7E-44 338.3 26.9 330 69-497 33-424 (569)
45 KOG0347 RNA helicase [RNA proc 100.0 5.3E-40 1.2E-44 353.4 19.6 353 64-495 190-579 (731)
46 KOG0341 DEAD-box protein abstr 100.0 2.3E-40 4.9E-45 341.8 13.2 318 70-488 185-531 (610)
47 KOG0350 DEAD-box ATP-dependent 100.0 1E-38 2.2E-43 340.7 24.1 330 72-496 154-550 (620)
48 KOG0332 ATP-dependent RNA heli 100.0 2.4E-38 5.2E-43 326.8 23.3 326 73-493 108-451 (477)
49 KOG0339 ATP-dependent RNA heli 100.0 2E-37 4.4E-42 330.1 24.8 311 74-485 242-575 (731)
50 TIGR00580 mfd transcription-re 100.0 8.8E-37 1.9E-41 370.9 32.9 310 65-485 440-770 (926)
51 PRK10917 ATP-dependent DNA hel 100.0 2.1E-36 4.5E-41 363.9 34.3 310 65-485 250-589 (681)
52 KOG0327 Translation initiation 100.0 1.9E-37 4.1E-42 324.1 20.3 334 48-495 30-379 (397)
53 KOG0344 ATP-dependent RNA heli 100.0 6.8E-37 1.5E-41 335.4 25.4 312 72-485 153-495 (593)
54 PRK10689 transcription-repair 100.0 4.3E-36 9.2E-41 372.5 34.2 310 65-485 589-919 (1147)
55 KOG0949 Predicted helicase, DE 100.0 3.7E-36 8E-41 341.3 30.4 442 74-531 509-1097(1330)
56 KOG0334 RNA helicase [RNA proc 100.0 1.5E-36 3.2E-41 352.9 24.9 317 69-484 379-719 (997)
57 TIGR00643 recG ATP-dependent D 100.0 4.7E-36 1E-40 358.7 29.2 308 66-485 225-566 (630)
58 COG0514 RecQ Superfamily II DN 100.0 7.6E-36 1.6E-40 338.2 26.6 320 67-493 7-344 (590)
59 KOG4284 DEAD box protein [Tran 100.0 4.2E-36 9.1E-41 327.8 21.8 328 68-489 38-383 (980)
60 KOG0950 DNA polymerase theta/e 100.0 1.3E-35 2.8E-40 340.2 24.8 389 69-498 215-623 (1008)
61 COG1111 MPH1 ERCC4-like helica 100.0 1.8E-33 4E-38 303.9 30.8 364 75-485 14-481 (542)
62 PHA02558 uvsW UvsW helicase; P 100.0 7.3E-34 1.6E-38 331.7 30.1 319 75-474 113-443 (501)
63 TIGR01970 DEAH_box_HrpB ATP-de 100.0 7.1E-34 1.5E-38 342.3 30.1 314 79-485 5-336 (819)
64 TIGR02621 cas3_GSU0051 CRISPR- 100.0 4.7E-34 1E-38 336.8 27.8 310 67-481 6-388 (844)
65 PRK11664 ATP-dependent RNA hel 100.0 2.6E-33 5.7E-38 338.3 29.5 315 78-485 7-339 (812)
66 TIGR01587 cas3_core CRISPR-ass 100.0 7.1E-33 1.5E-37 312.7 27.6 295 93-485 1-336 (358)
67 KOG0337 ATP-dependent RNA heli 100.0 6.7E-34 1.5E-38 298.2 17.5 322 70-491 36-376 (529)
68 PRK09401 reverse gyrase; Revie 100.0 6.1E-32 1.3E-36 336.2 31.3 270 68-442 72-405 (1176)
69 PHA02653 RNA helicase NPH-II; 100.0 5.6E-32 1.2E-36 318.4 29.0 308 79-485 167-514 (675)
70 PF13234 rRNA_proc-arch: rRNA- 100.0 9.4E-33 2E-37 296.3 20.0 227 503-729 1-267 (268)
71 COG1205 Distinct helicase fami 100.0 2.1E-31 4.6E-36 322.1 28.1 329 66-483 60-420 (851)
72 KOG0354 DEAD-box like helicase 100.0 1.1E-30 2.5E-35 298.8 32.2 365 74-484 60-528 (746)
73 TIGR03158 cas3_cyano CRISPR-as 100.0 1E-30 2.2E-35 292.1 28.1 285 80-468 1-357 (357)
74 PRK13766 Hef nuclease; Provisi 100.0 2.7E-30 5.8E-35 319.7 34.8 367 73-485 12-479 (773)
75 TIGR00603 rad25 DNA repair hel 100.0 3.3E-30 7.2E-35 301.6 30.4 331 72-485 251-607 (732)
76 KOG0329 ATP-dependent RNA heli 100.0 9.9E-32 2.1E-36 264.0 11.9 297 51-492 49-362 (387)
77 KOG0352 ATP-dependent DNA heli 100.0 3.9E-30 8.5E-35 269.5 22.3 342 66-497 8-373 (641)
78 KOG0351 ATP-dependent DNA heli 100.0 1.4E-30 3.1E-35 311.9 21.4 328 65-498 252-604 (941)
79 TIGR01054 rgy reverse gyrase. 100.0 7.5E-30 1.6E-34 318.2 27.5 271 68-442 70-404 (1171)
80 PRK14701 reverse gyrase; Provi 100.0 7.8E-30 1.7E-34 323.4 26.7 304 67-476 70-449 (1638)
81 PRK11131 ATP-dependent RNA hel 100.0 4.6E-29 9.9E-34 305.4 31.2 315 77-485 75-411 (1294)
82 COG1200 RecG RecG-like helicas 100.0 7.3E-28 1.6E-32 271.9 27.2 308 65-486 251-592 (677)
83 COG1061 SSL2 DNA or RNA helica 100.0 1.1E-27 2.4E-32 274.1 28.9 332 71-470 31-376 (442)
84 PRK04914 ATP-dependent helicas 100.0 4.4E-27 9.6E-32 284.9 34.2 376 74-497 150-617 (956)
85 PRK09200 preprotein translocas 100.0 1.2E-26 2.6E-31 274.4 35.0 362 68-484 70-540 (790)
86 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.1E-27 4.5E-32 292.1 28.6 315 78-485 69-404 (1283)
87 PRK05580 primosome assembly pr 100.0 1.6E-27 3.5E-32 285.7 25.5 364 72-495 140-558 (679)
88 KOG0353 ATP-dependent DNA heli 100.0 7.8E-28 1.7E-32 248.2 19.1 315 66-484 83-466 (695)
89 TIGR03714 secA2 accessory Sec 100.0 2E-26 4.4E-31 269.8 31.9 347 72-484 66-536 (762)
90 PRK12898 secA preprotein trans 100.0 3.5E-27 7.5E-32 273.3 24.9 124 70-195 97-255 (656)
91 COG4098 comFA Superfamily II D 100.0 7.8E-26 1.7E-30 232.4 31.7 311 72-485 93-416 (441)
92 TIGR00963 secA preprotein tran 99.9 2.5E-26 5.4E-31 267.2 27.9 363 68-484 48-518 (745)
93 PRK09694 helicase Cas3; Provis 99.9 9E-26 1.9E-30 272.0 29.2 322 74-472 284-664 (878)
94 COG1197 Mfd Transcription-repa 99.9 1.6E-25 3.4E-30 266.2 27.8 307 65-485 583-913 (1139)
95 TIGR00595 priA primosomal prot 99.9 4.1E-25 8.8E-30 255.9 28.2 327 95-485 1-381 (505)
96 KOG0349 Putative DEAD-box RNA 99.9 6.5E-26 1.4E-30 237.9 15.6 295 121-484 288-614 (725)
97 PRK11448 hsdR type I restricti 99.9 1.1E-23 2.4E-28 261.2 30.4 332 75-472 412-802 (1123)
98 KOG0951 RNA helicase BRR2, DEA 99.9 6.2E-23 1.3E-27 239.4 23.3 359 77-513 1144-1520(1674)
99 COG1643 HrpA HrpA-like helicas 99.9 1.1E-22 2.3E-27 241.5 25.9 313 77-485 51-387 (845)
100 KOG0922 DEAH-box RNA helicase 99.9 5.7E-22 1.2E-26 221.9 25.0 317 76-485 51-390 (674)
101 PRK13104 secA preprotein trans 99.9 2.6E-21 5.5E-26 228.4 31.2 124 70-195 76-215 (896)
102 cd00268 DEADc DEAD-box helicas 99.9 1.7E-22 3.7E-27 209.1 18.6 168 73-242 17-201 (203)
103 PRK12904 preprotein translocas 99.9 8.2E-21 1.8E-25 224.2 30.6 352 69-485 74-575 (830)
104 PF00270 DEAD: DEAD/DEAH box h 99.9 4.8E-22 1E-26 199.3 15.6 147 78-224 1-163 (169)
105 KOG0953 Mitochondrial RNA heli 99.9 2.3E-21 5.1E-26 210.7 20.6 289 91-498 191-488 (700)
106 PLN03142 Probable chromatin-re 99.9 6.1E-20 1.3E-24 223.7 30.5 362 75-492 168-607 (1033)
107 PRK12906 secA preprotein trans 99.9 5E-20 1.1E-24 216.7 28.1 363 68-484 72-554 (796)
108 KOG0923 mRNA splicing factor A 99.9 5.3E-20 1.1E-24 203.3 23.9 318 75-485 264-606 (902)
109 COG1198 PriA Primosomal protei 99.8 3.1E-19 6.7E-24 209.3 27.7 361 76-497 198-614 (730)
110 KOG0920 ATP-dependent RNA heli 99.8 1.7E-19 3.7E-24 213.1 25.7 368 77-514 174-567 (924)
111 COG1203 CRISPR-associated heli 99.8 1.9E-19 4.2E-24 218.3 23.8 312 76-485 195-550 (733)
112 PRK13107 preprotein translocas 99.8 8.7E-19 1.9E-23 206.4 27.2 124 70-195 76-215 (908)
113 KOG0924 mRNA splicing factor A 99.8 3.2E-19 6.9E-24 197.3 20.8 313 77-485 357-697 (1042)
114 PRK12899 secA preprotein trans 99.8 6.6E-18 1.4E-22 199.2 32.1 121 75-195 91-228 (970)
115 TIGR00631 uvrb excinuclease AB 99.8 4.9E-18 1.1E-22 201.5 28.5 123 317-485 428-553 (655)
116 COG1110 Reverse gyrase [DNA re 99.8 3.4E-18 7.5E-23 198.4 25.3 271 66-445 72-416 (1187)
117 COG0556 UvrB Helicase subunit 99.8 2.2E-17 4.9E-22 179.7 29.3 125 316-485 431-557 (663)
118 TIGR01407 dinG_rel DnaQ family 99.8 2.9E-17 6.3E-22 203.6 31.4 65 73-137 242-310 (850)
119 PRK05298 excinuclease ABC subu 99.8 2.1E-16 4.5E-21 189.3 34.8 122 317-484 432-556 (652)
120 TIGR00348 hsdR type I site-spe 99.8 3.7E-17 8E-22 196.5 27.8 144 77-225 239-404 (667)
121 COG4096 HsdR Type I site-speci 99.8 1.3E-17 2.7E-22 191.4 20.6 340 76-470 165-525 (875)
122 KOG0926 DEAH-box RNA helicase 99.8 2.2E-17 4.7E-22 185.9 19.3 346 82-485 262-704 (1172)
123 smart00487 DEXDc DEAD-like hel 99.7 8.6E-17 1.9E-21 164.9 18.9 156 74-229 6-176 (201)
124 KOG1123 RNA polymerase II tran 99.7 2.8E-17 6.1E-22 176.4 14.9 329 46-471 274-635 (776)
125 KOG0385 Chromatin remodeling c 99.7 1.5E-15 3.3E-20 171.2 26.5 352 74-486 165-600 (971)
126 KOG4150 Predicted ATP-dependen 99.7 1.2E-16 2.6E-21 173.5 16.7 329 71-481 280-638 (1034)
127 PRK12900 secA preprotein trans 99.7 5.1E-15 1.1E-19 175.4 27.7 119 315-484 582-710 (1025)
128 PF04851 ResIII: Type III rest 99.7 2.1E-15 4.5E-20 153.2 16.4 141 75-224 2-183 (184)
129 PRK07246 bifunctional ATP-depe 99.6 1.1E-13 2.3E-18 169.5 32.4 66 74-140 243-313 (820)
130 KOG1000 Chromatin remodeling p 99.6 2.6E-14 5.7E-19 154.0 22.6 360 77-494 199-612 (689)
131 PRK08074 bifunctional ATP-depe 99.6 1.5E-13 3.2E-18 171.4 31.6 123 74-196 255-469 (928)
132 KOG0925 mRNA splicing factor A 99.6 1.7E-14 3.6E-19 155.1 19.6 323 65-485 36-387 (699)
133 KOG0387 Transcription-coupled 99.6 3E-13 6.4E-18 153.9 29.5 353 77-485 206-658 (923)
134 PRK13103 secA preprotein trans 99.6 7.5E-13 1.6E-17 156.9 29.5 123 71-195 77-215 (913)
135 COG4889 Predicted helicase [Ge 99.6 1.5E-14 3.2E-19 164.3 13.6 362 65-482 150-585 (1518)
136 PRK12326 preprotein translocas 99.6 1E-12 2.2E-17 152.1 28.9 126 68-195 70-211 (764)
137 cd00046 DEXDc DEAD-like helica 99.6 3.5E-14 7.6E-19 136.8 14.4 132 92-223 1-144 (144)
138 KOG0384 Chromodomain-helicase 99.5 7.8E-13 1.7E-17 156.6 22.6 357 74-486 368-812 (1373)
139 KOG0952 DNA/RNA helicase MER3/ 99.5 1.3E-15 2.7E-20 177.3 -1.3 277 77-409 928-1228(1230)
140 PF00271 Helicase_C: Helicase 99.5 4.2E-14 9.1E-19 121.9 8.1 72 392-471 7-78 (78)
141 cd00079 HELICc Helicase superf 99.5 1.2E-13 2.6E-18 131.8 11.4 104 328-480 27-130 (131)
142 TIGR03117 cas_csf4 CRISPR-asso 99.5 1.6E-11 3.5E-16 143.8 29.1 58 86-143 11-70 (636)
143 KOG0389 SNF2 family DNA-depend 99.5 4.9E-12 1.1E-16 143.9 22.8 160 73-236 396-577 (941)
144 KOG0390 DNA repair protein, SN 99.4 3.8E-11 8.3E-16 140.8 29.2 365 76-493 238-716 (776)
145 KOG0392 SNF2 family DNA-depend 99.4 1.1E-11 2.3E-16 146.6 23.3 351 76-485 975-1454(1549)
146 PRK14873 primosome assembly pr 99.4 9.4E-12 2E-16 147.8 20.7 123 95-224 164-304 (665)
147 PRK11747 dinG ATP-dependent DN 99.4 1E-10 2.2E-15 141.6 29.1 63 74-136 23-95 (697)
148 PRK12903 secA preprotein trans 99.4 2.7E-10 5.8E-15 134.0 31.0 125 69-195 71-211 (925)
149 COG1199 DinG Rad3-related DNA 99.4 7.6E-11 1.7E-15 143.8 26.2 69 73-141 12-85 (654)
150 CHL00122 secA preprotein trans 99.4 2.7E-10 5.9E-15 134.9 28.7 126 68-195 68-209 (870)
151 PF07652 Flavi_DEAD: Flaviviru 99.3 4.7E-12 1E-16 118.2 9.0 135 90-227 3-140 (148)
152 TIGR02562 cas3_yersinia CRISPR 99.3 1.5E-10 3.2E-15 138.7 22.9 149 77-227 409-638 (1110)
153 TIGR00604 rad3 DNA repair heli 99.3 2.5E-10 5.4E-15 139.5 25.4 72 71-142 4-83 (705)
154 PRK12902 secA preprotein trans 99.3 1.9E-09 4.1E-14 127.5 30.3 125 69-195 78-218 (939)
155 smart00490 HELICc helicase sup 99.3 1.5E-11 3.3E-16 106.7 8.0 71 393-471 12-82 (82)
156 KOG1002 Nucleotide excision re 99.2 4.4E-09 9.6E-14 113.9 22.9 158 73-235 181-368 (791)
157 PF00176 SNF2_N: SNF2 family N 99.1 1.1E-09 2.3E-14 120.5 17.0 151 80-236 1-187 (299)
158 PF02399 Herpes_ori_bp: Origin 99.0 2.5E-08 5.3E-13 117.1 23.3 319 92-484 50-387 (824)
159 KOG4439 RNA polymerase II tran 99.0 9.6E-09 2.1E-13 116.1 19.0 148 72-223 321-501 (901)
160 PRK12901 secA preprotein trans 99.0 6.8E-08 1.5E-12 115.7 24.9 122 72-195 165-303 (1112)
161 KOG0386 Chromatin remodeling c 99.0 5.3E-09 1.1E-13 122.5 14.6 144 73-223 391-554 (1157)
162 smart00488 DEXDc2 DEAD-like he 98.9 9.3E-09 2E-13 111.6 13.4 71 72-142 4-84 (289)
163 smart00489 DEXDc3 DEAD-like he 98.9 9.3E-09 2E-13 111.6 13.4 71 72-142 4-84 (289)
164 COG0553 HepA Superfamily II DN 98.8 1.8E-07 3.8E-12 118.9 21.4 359 75-485 337-822 (866)
165 KOG0921 Dosage compensation co 98.8 2E-08 4.4E-13 115.9 11.2 358 81-485 383-774 (1282)
166 KOG0388 SNF2 family DNA-depend 98.8 2.8E-07 6.1E-12 104.1 18.2 124 314-485 1030-1154(1185)
167 COG0610 Type I site-specific r 98.7 7.2E-07 1.6E-11 111.3 19.5 129 92-224 274-414 (962)
168 PF07517 SecA_DEAD: SecA DEAD- 98.4 1.4E-06 2.9E-11 92.2 10.1 125 69-195 70-210 (266)
169 PF06862 DUF1253: Protein of u 98.3 0.00016 3.5E-09 81.5 25.7 254 158-497 131-426 (442)
170 PF13604 AAA_30: AAA domain; P 98.3 5.6E-06 1.2E-10 84.8 11.8 122 76-222 1-130 (196)
171 PF13086 AAA_11: AAA domain; P 98.3 5.4E-06 1.2E-10 87.4 11.6 66 76-141 1-75 (236)
172 PF02562 PhoH: PhoH-like prote 98.2 6.3E-06 1.4E-10 83.7 10.3 124 77-222 5-155 (205)
173 KOG1015 Transcription regulato 98.2 3.1E-05 6.7E-10 90.6 16.1 141 328-495 1141-1288(1567)
174 PRK15483 type III restriction- 98.2 1.6E-05 3.4E-10 96.8 13.8 130 92-225 60-240 (986)
175 PF13872 AAA_34: P-loop contai 98.1 3.3E-05 7.2E-10 81.9 13.6 147 76-224 37-221 (303)
176 COG0653 SecA Preprotein transl 98.1 0.00035 7.7E-09 83.5 23.3 123 71-195 75-213 (822)
177 TIGR00596 rad1 DNA repair prot 98.0 0.00072 1.6E-08 82.6 24.1 86 158-243 7-96 (814)
178 PF09848 DUF2075: Uncharacteri 98.0 2E-05 4.3E-10 88.6 9.6 93 93-196 3-97 (352)
179 KOG1803 DNA helicase [Replicat 97.9 2.2E-05 4.8E-10 88.9 8.5 70 71-140 180-250 (649)
180 PRK10536 hypothetical protein; 97.8 0.00014 3E-09 76.0 11.8 133 77-220 60-210 (262)
181 TIGR01448 recD_rel helicase, p 97.8 0.00018 3.9E-09 87.9 14.5 128 70-222 317-452 (720)
182 PF13245 AAA_19: Part of AAA d 97.8 8.9E-05 1.9E-09 63.0 7.1 56 84-139 2-62 (76)
183 KOG2340 Uncharacterized conser 97.7 0.0016 3.5E-08 72.6 18.5 129 75-207 215-436 (698)
184 COG3421 Uncharacterized protei 97.7 0.00088 1.9E-08 75.7 16.3 133 97-230 3-172 (812)
185 TIGR01447 recD exodeoxyribonuc 97.7 0.00034 7.4E-09 83.1 13.5 137 78-221 147-294 (586)
186 PRK10875 recD exonuclease V su 97.7 0.00035 7.6E-09 83.1 13.3 143 71-220 145-299 (615)
187 KOG0391 SNF2 family DNA-depend 97.6 0.00027 5.9E-09 84.6 10.2 142 76-223 615-775 (1958)
188 KOG1132 Helicase of the DEAD s 97.5 0.0004 8.6E-09 82.0 10.9 74 69-142 14-133 (945)
189 TIGR02768 TraA_Ti Ti-type conj 97.5 0.00099 2.1E-08 81.9 14.7 124 73-220 349-474 (744)
190 PF13307 Helicase_C_2: Helicas 97.5 0.00032 6.9E-09 69.9 8.5 119 326-485 6-150 (167)
191 PF12340 DUF3638: Protein of u 97.5 0.00087 1.9E-08 68.8 11.0 124 73-196 20-186 (229)
192 COG3587 Restriction endonuclea 97.4 0.05 1.1E-06 64.7 26.1 132 92-227 75-246 (985)
193 PRK13889 conjugal transfer rel 97.4 0.0015 3.3E-08 81.3 14.2 126 72-222 342-470 (988)
194 PRK06526 transposase; Provisio 97.4 0.0012 2.5E-08 70.3 11.4 108 86-223 93-201 (254)
195 PF13401 AAA_22: AAA domain; P 97.4 0.00042 9.1E-09 65.8 6.9 117 90-223 3-125 (131)
196 cd00009 AAA The AAA+ (ATPases 97.3 0.0021 4.5E-08 61.7 11.2 39 91-129 19-57 (151)
197 PRK13826 Dtr system oriT relax 97.2 0.0039 8.6E-08 78.2 14.8 126 73-222 378-505 (1102)
198 PRK04296 thymidine kinase; Pro 97.2 0.00078 1.7E-08 68.6 6.6 87 91-195 2-91 (190)
199 smart00382 AAA ATPases associa 97.1 0.0012 2.7E-08 62.7 7.7 93 91-198 2-94 (148)
200 PRK08181 transposase; Validate 97.1 0.0081 1.7E-07 64.4 13.8 124 77-235 88-216 (269)
201 COG1875 NYN ribonuclease and A 97.1 0.0036 7.7E-08 67.5 10.7 138 68-220 219-385 (436)
202 TIGR00376 DNA helicase, putati 96.9 0.0033 7.3E-08 75.8 10.4 67 76-142 157-224 (637)
203 PF00580 UvrD-helicase: UvrD/R 96.9 0.0017 3.7E-08 71.7 7.0 114 77-192 1-125 (315)
204 KOG1016 Predicted DNA helicase 96.9 0.12 2.5E-06 60.5 21.0 128 329-485 719-849 (1387)
205 KOG0391 SNF2 family DNA-depend 96.8 0.011 2.3E-07 71.6 12.8 147 317-511 1265-1424(1958)
206 PHA02533 17 large terminase pr 96.7 0.0062 1.3E-07 71.7 9.9 141 73-222 56-209 (534)
207 PF05970 PIF1: PIF1-like helic 96.6 0.0054 1.2E-07 69.3 7.7 107 77-196 2-116 (364)
208 PRK07952 DNA replication prote 96.4 0.052 1.1E-06 57.3 13.2 115 78-220 78-202 (244)
209 PRK08116 hypothetical protein; 96.3 0.024 5.2E-07 61.0 10.3 60 76-136 88-158 (268)
210 PRK08727 hypothetical protein; 96.3 0.022 4.8E-07 60.1 9.8 35 92-126 42-76 (233)
211 PRK08903 DnaA regulatory inact 96.2 0.05 1.1E-06 57.1 12.3 49 80-128 27-79 (227)
212 KOG1805 DNA replication helica 96.2 0.016 3.6E-07 69.5 9.2 117 76-196 669-810 (1100)
213 PRK12377 putative replication 96.2 0.06 1.3E-06 57.0 12.5 76 91-195 101-176 (248)
214 PRK09183 transposase/IS protei 96.1 0.073 1.6E-06 57.0 13.2 47 88-135 99-145 (259)
215 KOG1131 RNA polymerase II tran 96.1 0.046 9.9E-07 61.3 11.3 74 69-142 8-90 (755)
216 TIGR02760 TraI_TIGR conjugativ 96.0 0.061 1.3E-06 72.8 14.6 65 73-137 426-492 (1960)
217 PRK08084 DNA replication initi 96.0 0.033 7.1E-07 58.8 9.8 38 91-128 45-82 (235)
218 KOG0989 Replication factor C, 96.0 0.017 3.6E-07 61.1 7.2 42 179-224 126-170 (346)
219 KOG1802 RNA helicase nonsense 96.0 0.024 5.2E-07 65.2 8.9 78 74-151 407-486 (935)
220 cd01124 KaiC KaiC is a circadi 96.0 0.012 2.6E-07 59.6 6.2 49 93-142 1-49 (187)
221 TIGR03420 DnaA_homol_Hda DnaA 96.0 0.041 8.9E-07 57.6 10.4 36 90-125 37-72 (226)
222 PRK12723 flagellar biosynthesi 96.0 0.13 2.8E-06 58.1 14.7 126 91-236 174-309 (388)
223 PRK06893 DNA replication initi 96.0 0.027 5.8E-07 59.3 8.9 36 92-127 40-75 (229)
224 PRK05642 DNA replication initi 96.0 0.035 7.5E-07 58.6 9.7 94 92-224 46-140 (234)
225 PRK05703 flhF flagellar biosyn 95.9 0.19 4.1E-06 57.8 15.9 128 91-236 221-354 (424)
226 PRK06921 hypothetical protein; 95.9 0.07 1.5E-06 57.3 11.8 43 90-134 116-160 (266)
227 smart00492 HELICc3 helicase su 95.9 0.04 8.8E-07 53.0 8.8 87 394-481 23-135 (141)
228 PRK11054 helD DNA helicase IV; 95.8 0.039 8.5E-07 67.1 10.4 84 74-172 194-281 (684)
229 PRK11889 flhF flagellar biosyn 95.8 0.24 5.1E-06 55.4 15.3 127 92-236 242-374 (436)
230 PRK14974 cell division protein 95.8 0.19 4.1E-06 55.7 14.7 121 92-225 141-266 (336)
231 COG1484 DnaC DNA replication p 95.7 0.047 1E-06 58.2 9.4 107 72-208 78-194 (254)
232 PRK10919 ATP-dependent DNA hel 95.7 0.033 7.2E-07 68.1 9.3 86 76-173 2-91 (672)
233 PRK00411 cdc6 cell division co 95.7 0.065 1.4E-06 61.4 11.2 121 92-223 56-183 (394)
234 cd01120 RecA-like_NTPases RecA 95.7 0.038 8.2E-07 54.2 8.1 41 94-134 2-42 (165)
235 PRK06835 DNA replication prote 95.7 0.11 2.4E-06 57.5 12.3 45 90-135 182-226 (329)
236 COG1474 CDC6 Cdc6-related prot 95.6 0.084 1.8E-06 59.3 11.4 106 91-210 42-150 (366)
237 TIGR03015 pepcterm_ATPase puta 95.6 0.11 2.4E-06 56.0 12.1 107 77-195 24-136 (269)
238 PRK14712 conjugal transfer nic 95.6 0.074 1.6E-06 69.3 12.1 126 72-222 831-967 (1623)
239 COG2256 MGS1 ATPase related to 95.6 0.067 1.5E-06 58.8 10.0 95 92-226 49-143 (436)
240 PHA03333 putative ATPase subun 95.6 0.17 3.7E-06 59.8 13.9 152 74-237 167-345 (752)
241 PRK12402 replication factor C 95.6 0.058 1.3E-06 60.3 10.0 26 88-113 31-58 (337)
242 COG1444 Predicted P-loop ATPas 95.5 0.056 1.2E-06 64.8 9.7 134 76-227 211-360 (758)
243 PTZ00112 origin recognition co 95.5 0.096 2.1E-06 63.4 11.4 93 94-197 784-884 (1164)
244 KOG0298 DEAD box-containing he 95.5 0.039 8.4E-07 68.2 8.3 131 89-223 372-550 (1394)
245 PF00308 Bac_DnaA: Bacterial d 95.4 0.087 1.9E-06 54.9 9.9 100 93-226 36-143 (219)
246 PRK14722 flhF flagellar biosyn 95.3 0.09 2E-06 58.8 10.1 116 90-225 136-259 (374)
247 PRK00149 dnaA chromosomal repl 95.3 0.087 1.9E-06 61.4 10.5 103 92-224 149-255 (450)
248 PF05127 Helicase_RecD: Helica 95.2 0.016 3.5E-07 57.5 3.5 118 95-227 1-127 (177)
249 TIGR00362 DnaA chromosomal rep 95.1 0.12 2.6E-06 59.4 11.0 75 92-197 137-214 (405)
250 PF06745 KaiC: KaiC; InterPro 95.1 0.089 1.9E-06 55.2 9.0 100 90-194 18-127 (226)
251 smart00491 HELICc2 helicase su 95.1 0.048 1E-06 52.5 6.2 84 397-481 23-136 (142)
252 PRK11773 uvrD DNA-dependent he 95.0 0.093 2E-06 65.0 10.1 104 76-192 9-118 (721)
253 KOG1001 Helicase-like transcri 95.0 0.14 3.1E-06 61.7 11.1 150 79-236 135-307 (674)
254 PRK13709 conjugal transfer nic 95.0 0.2 4.3E-06 66.4 13.3 128 70-222 961-1099(1747)
255 PHA03368 DNA packaging termina 94.9 0.38 8.2E-06 56.8 13.9 135 92-238 255-404 (738)
256 TIGR01075 uvrD DNA helicase II 94.9 0.092 2E-06 65.0 9.8 104 76-192 4-113 (715)
257 PRK05973 replicative DNA helic 94.9 0.18 3.9E-06 52.9 10.3 56 86-142 59-114 (237)
258 PHA00729 NTP-binding motif con 94.8 0.24 5.2E-06 51.3 10.8 116 92-235 18-138 (226)
259 PRK04195 replication factor C 94.8 0.14 3E-06 60.3 10.3 19 91-109 39-57 (482)
260 PRK12422 chromosomal replicati 94.8 0.15 3.2E-06 59.1 10.2 103 92-224 142-246 (445)
261 PRK08533 flagellar accessory p 94.7 0.11 2.4E-06 54.6 8.5 54 88-142 21-74 (230)
262 PRK06731 flhF flagellar biosyn 94.7 0.76 1.6E-05 49.3 14.9 128 90-236 74-208 (270)
263 PF13173 AAA_14: AAA domain 94.7 0.17 3.8E-06 47.7 8.9 35 91-126 2-36 (128)
264 TIGR02760 TraI_TIGR conjugativ 94.6 0.21 4.6E-06 67.8 12.7 123 74-221 1017-1148(1960)
265 PRK12727 flagellar biosynthesi 94.6 0.45 9.7E-06 55.3 13.5 128 89-235 348-480 (559)
266 COG1702 PhoH Phosphate starvat 94.6 0.047 1E-06 59.0 5.3 106 77-193 129-254 (348)
267 PRK08769 DNA polymerase III su 94.6 0.35 7.5E-06 53.2 12.2 135 76-222 4-152 (319)
268 TIGR02928 orc1/cdc6 family rep 94.6 0.27 5.9E-06 55.6 11.8 22 92-113 41-62 (365)
269 TIGR01074 rep ATP-dependent DN 94.5 0.13 2.9E-06 63.2 9.8 86 77-174 2-91 (664)
270 PF03354 Terminase_1: Phage Te 94.5 0.11 2.3E-06 61.1 8.6 140 79-221 1-161 (477)
271 PF00448 SRP54: SRP54-type pro 94.5 0.23 5E-06 50.7 9.8 121 93-226 3-128 (196)
272 TIGR02881 spore_V_K stage V sp 94.4 0.2 4.4E-06 53.8 9.7 20 92-111 43-62 (261)
273 PRK05986 cob(I)alamin adenolsy 94.3 0.23 5E-06 50.0 9.1 132 89-224 20-159 (191)
274 PTZ00293 thymidine kinase; Pro 94.2 0.23 5E-06 50.8 9.0 112 91-223 4-115 (211)
275 PLN03025 replication factor C 94.2 0.25 5.5E-06 54.7 10.3 19 92-110 35-53 (319)
276 PRK14087 dnaA chromosomal repl 94.2 0.17 3.6E-06 58.8 9.0 104 92-224 142-250 (450)
277 PRK08939 primosomal protein Dn 94.2 0.25 5.4E-06 54.2 9.9 101 90-220 155-258 (306)
278 cd00984 DnaB_C DnaB helicase C 94.2 0.2 4.3E-06 53.1 9.0 39 89-127 11-50 (242)
279 PF00004 AAA: ATPase family as 94.1 0.11 2.3E-06 49.0 6.2 73 94-197 1-73 (132)
280 PF13177 DNA_pol3_delta2: DNA 94.1 0.27 5.9E-06 48.6 9.1 131 81-224 2-143 (162)
281 PRK14088 dnaA chromosomal repl 94.1 0.41 8.8E-06 55.5 11.9 101 92-222 131-236 (440)
282 TIGR01073 pcrA ATP-dependent D 94.0 0.19 4.1E-06 62.4 9.6 85 76-173 4-92 (726)
283 TIGR02880 cbbX_cfxQ probable R 94.0 0.36 7.8E-06 52.5 10.6 20 91-110 58-77 (284)
284 PF05496 RuvB_N: Holliday junc 93.9 0.21 4.6E-06 51.3 8.0 18 92-109 51-68 (233)
285 cd00561 CobA_CobO_BtuR ATP:cor 93.9 0.44 9.6E-06 46.6 10.0 128 93-224 4-139 (159)
286 PF13871 Helicase_C_4: Helicas 93.9 0.077 1.7E-06 56.5 5.1 67 410-484 53-127 (278)
287 COG4626 Phage terminase-like p 93.9 0.36 7.7E-06 55.7 10.5 151 71-223 56-225 (546)
288 PRK04328 hypothetical protein; 93.9 0.22 4.8E-06 53.0 8.6 52 90-142 22-73 (249)
289 PRK14958 DNA polymerase III su 93.8 0.35 7.7E-06 56.9 10.9 36 181-220 118-156 (509)
290 TIGR02688 conserved hypothetic 93.8 0.092 2E-06 58.9 5.7 52 58-109 168-227 (449)
291 PRK05707 DNA polymerase III su 93.8 0.31 6.7E-06 54.0 9.9 128 77-222 4-145 (328)
292 PRK14956 DNA polymerase III su 93.8 0.16 3.5E-06 58.4 7.7 38 181-222 120-158 (484)
293 PRK12724 flagellar biosynthesi 93.7 1.2 2.6E-05 50.5 14.3 114 92-225 224-346 (432)
294 PRK06067 flagellar accessory p 93.7 0.14 3.1E-06 53.9 6.9 52 90-142 24-75 (234)
295 PRK13833 conjugal transfer pro 93.7 0.15 3.2E-06 56.1 7.0 55 77-132 129-187 (323)
296 TIGR01547 phage_term_2 phage t 93.6 0.19 4.2E-06 57.5 8.3 123 93-227 3-144 (396)
297 CHL00181 cbbX CbbX; Provisiona 93.6 0.29 6.3E-06 53.3 9.0 23 91-113 59-81 (287)
298 KOG1133 Helicase of the DEAD s 93.6 0.11 2.3E-06 60.7 5.7 43 73-115 12-58 (821)
299 COG1435 Tdk Thymidine kinase [ 93.5 0.6 1.3E-05 46.7 10.2 93 91-196 4-96 (201)
300 PF01695 IstB_IS21: IstB-like 93.5 0.1 2.2E-06 52.4 5.0 47 88-135 44-90 (178)
301 PRK07003 DNA polymerase III su 93.5 0.16 3.4E-06 61.1 7.2 36 181-220 118-156 (830)
302 PRK09112 DNA polymerase III su 93.5 0.41 9E-06 53.5 10.3 124 88-221 39-179 (351)
303 PRK11823 DNA repair protein Ra 93.5 0.26 5.7E-06 57.1 9.0 89 90-196 79-170 (446)
304 PHA02544 44 clamp loader, smal 93.4 0.28 6.1E-06 54.3 8.9 40 181-220 99-138 (316)
305 TIGR00064 ftsY signal recognit 93.4 0.81 1.8E-05 49.3 12.0 119 92-224 73-203 (272)
306 PRK12323 DNA polymerase III su 93.4 0.38 8.2E-06 57.2 10.0 38 180-221 122-162 (700)
307 cd01122 GP4d_helicase GP4d_hel 93.4 0.24 5.2E-06 53.5 8.1 54 88-142 27-81 (271)
308 TIGR03877 thermo_KaiC_1 KaiC d 93.3 0.16 3.4E-06 53.7 6.3 52 90-142 20-71 (237)
309 TIGR03499 FlhF flagellar biosy 93.3 0.46 1E-05 51.6 10.0 84 91-191 194-281 (282)
310 PRK12726 flagellar biosynthesi 93.2 1.4 3.1E-05 49.2 13.6 127 90-234 205-337 (407)
311 PRK13342 recombination factor 93.2 0.38 8.1E-06 55.5 9.7 40 182-226 92-131 (413)
312 PRK13894 conjugal transfer ATP 93.2 0.17 3.7E-06 55.8 6.5 55 77-132 133-191 (319)
313 TIGR00767 rho transcription te 93.1 0.11 2.4E-06 58.1 4.9 28 88-116 165-192 (415)
314 PRK14086 dnaA chromosomal repl 93.1 0.56 1.2E-05 55.6 10.9 101 93-224 316-421 (617)
315 cd01121 Sms Sms (bacterial rad 93.0 0.25 5.5E-06 55.6 7.7 89 89-195 80-171 (372)
316 PRK10416 signal recognition pa 92.9 1.7 3.7E-05 47.9 13.8 123 91-224 114-245 (318)
317 PF05707 Zot: Zonular occluden 92.8 0.11 2.4E-06 53.1 4.0 36 94-131 3-39 (193)
318 PRK14960 DNA polymerase III su 92.8 0.46 9.9E-06 56.6 9.4 36 181-220 117-155 (702)
319 PRK07994 DNA polymerase III su 92.7 0.45 9.7E-06 57.2 9.5 36 180-219 117-155 (647)
320 PRK06964 DNA polymerase III su 92.7 0.68 1.5E-05 51.4 10.4 38 78-116 3-45 (342)
321 PHA00350 putative assembly pro 92.7 0.73 1.6E-05 52.0 10.6 37 94-132 4-41 (399)
322 KOG2028 ATPase related to the 92.7 0.2 4.4E-06 54.1 5.9 102 88-227 157-262 (554)
323 cd00983 recA RecA is a bacter 92.7 0.24 5.3E-06 54.3 6.7 89 91-195 55-146 (325)
324 PRK14723 flhF flagellar biosyn 92.6 2.1 4.6E-05 52.2 15.1 126 91-236 185-317 (767)
325 TIGR02782 TrbB_P P-type conjug 92.6 0.3 6.5E-06 53.4 7.3 93 77-192 117-214 (299)
326 TIGR02785 addA_Gpos recombinat 92.6 0.29 6.3E-06 64.1 8.4 115 77-193 2-126 (1232)
327 TIGR03600 phage_DnaB phage rep 92.6 0.5 1.1E-05 54.6 9.6 108 88-196 191-319 (421)
328 COG0467 RAD55 RecA-superfamily 92.5 0.68 1.5E-05 49.7 9.9 53 89-142 21-73 (260)
329 PRK09376 rho transcription ter 92.5 0.15 3.3E-06 56.8 4.8 28 88-116 166-193 (416)
330 cd01393 recA_like RecA is a b 92.4 0.51 1.1E-05 49.4 8.6 99 90-195 18-127 (226)
331 PRK08691 DNA polymerase III su 92.4 0.35 7.5E-06 58.1 7.9 37 180-220 117-156 (709)
332 PRK08506 replicative DNA helic 92.3 0.57 1.2E-05 54.8 9.6 108 88-196 189-316 (472)
333 PRK14963 DNA polymerase III su 92.3 0.81 1.8E-05 53.8 10.8 28 179-210 113-140 (504)
334 COG1419 FlhF Flagellar GTP-bin 92.2 2.9 6.3E-05 46.9 14.3 138 91-258 203-345 (407)
335 PRK14961 DNA polymerase III su 92.2 0.72 1.6E-05 52.1 10.0 37 180-220 117-156 (363)
336 PRK13341 recombination factor 92.2 0.51 1.1E-05 57.8 9.2 40 182-226 109-148 (725)
337 PRK13851 type IV secretion sys 92.1 0.21 4.6E-06 55.5 5.5 88 87-192 158-246 (344)
338 COG2804 PulE Type II secretory 92.0 0.28 6E-06 56.1 6.3 44 77-121 242-287 (500)
339 KOG1513 Nuclear helicase MOP-3 92.0 0.16 3.5E-06 59.7 4.4 146 77-223 265-454 (1300)
340 COG2255 RuvB Holliday junction 92.0 0.37 8.1E-06 50.8 6.6 64 92-195 53-116 (332)
341 PF03796 DnaB_C: DnaB-like hel 91.9 1 2.2E-05 48.3 10.4 133 89-222 17-179 (259)
342 PRK06090 DNA polymerase III su 91.9 2.1 4.5E-05 47.2 12.8 133 77-222 4-147 (319)
343 PRK14951 DNA polymerase III su 91.8 0.93 2E-05 54.3 10.7 37 180-220 122-161 (618)
344 PRK06871 DNA polymerase III su 91.8 1.1 2.4E-05 49.4 10.6 130 77-222 3-146 (325)
345 PF01443 Viral_helicase1: Vira 91.8 0.23 5E-06 52.2 5.2 21 422-442 184-204 (234)
346 PRK14969 DNA polymerase III su 91.8 1 2.2E-05 53.4 11.1 37 180-220 117-156 (527)
347 COG0593 DnaA ATPase involved i 91.8 0.63 1.4E-05 52.5 8.8 106 91-227 113-222 (408)
348 COG2909 MalT ATP-dependent tra 91.8 0.32 7E-06 58.5 6.6 138 84-224 27-171 (894)
349 PRK00440 rfc replication facto 91.7 1.1 2.4E-05 49.4 10.8 18 93-110 40-57 (319)
350 PRK14964 DNA polymerase III su 91.7 0.95 2.1E-05 52.7 10.4 110 92-220 36-153 (491)
351 PRK00771 signal recognition pa 91.6 1 2.2E-05 51.8 10.4 118 92-224 96-218 (437)
352 cd01130 VirB11-like_ATPase Typ 91.6 0.37 8E-06 48.8 6.2 53 77-130 10-63 (186)
353 COG0470 HolB ATPase involved i 91.5 0.91 2E-05 50.3 9.8 121 90-220 22-146 (325)
354 COG3973 Superfamily I DNA and 91.4 0.79 1.7E-05 53.1 8.9 68 89-170 224-297 (747)
355 PRK06904 replicative DNA helic 91.4 1.1 2.3E-05 52.4 10.4 133 87-220 217-381 (472)
356 PRK07764 DNA polymerase III su 91.4 0.48 1E-05 58.8 8.0 37 180-220 118-157 (824)
357 PRK06620 hypothetical protein; 91.3 0.46 1E-05 49.3 6.6 18 92-109 45-62 (214)
358 PF05621 TniB: Bacterial TniB 91.3 0.75 1.6E-05 49.6 8.2 114 92-219 62-186 (302)
359 TIGR02974 phageshock_pspF psp 91.3 1 2.3E-05 50.0 9.8 95 80-195 11-106 (329)
360 PRK14952 DNA polymerase III su 91.2 0.88 1.9E-05 54.3 9.6 37 180-220 116-155 (584)
361 PRK14949 DNA polymerase III su 91.1 0.64 1.4E-05 57.2 8.4 35 181-219 118-155 (944)
362 COG1221 PspF Transcriptional r 91.1 0.74 1.6E-05 51.8 8.3 116 89-228 99-227 (403)
363 PRK09361 radB DNA repair and r 91.1 0.47 1E-05 49.7 6.6 39 90-128 22-60 (225)
364 PRK14962 DNA polymerase III su 91.1 0.55 1.2E-05 54.7 7.7 19 93-111 38-56 (472)
365 PF05876 Terminase_GpA: Phage 91.1 0.64 1.4E-05 55.4 8.4 127 73-208 13-162 (557)
366 PRK06645 DNA polymerase III su 91.0 1.6 3.5E-05 51.3 11.4 31 81-111 26-63 (507)
367 TIGR00635 ruvB Holliday juncti 91.0 0.62 1.3E-05 51.2 7.7 18 92-109 31-48 (305)
368 TIGR01650 PD_CobS cobaltochela 91.0 1.1 2.3E-05 49.3 9.2 27 84-110 57-83 (327)
369 COG4962 CpaF Flp pilus assembl 90.9 0.37 8.1E-06 52.4 5.6 60 73-133 153-214 (355)
370 PRK07471 DNA polymerase III su 90.9 1.6 3.5E-05 49.1 11.0 122 93-223 43-181 (365)
371 PRK11331 5-methylcytosine-spec 90.9 0.6 1.3E-05 53.3 7.4 33 77-109 180-212 (459)
372 COG2109 BtuR ATP:corrinoid ade 90.9 1.2 2.7E-05 44.1 8.6 135 94-234 31-177 (198)
373 PRK14957 DNA polymerase III su 90.7 1.4 3E-05 52.2 10.5 37 180-220 117-156 (546)
374 TIGR03689 pup_AAA proteasome A 90.6 0.47 1E-05 55.4 6.5 18 91-108 216-233 (512)
375 TIGR00708 cobA cob(I)alamin ad 90.5 1.5 3.2E-05 43.5 9.0 127 93-224 7-141 (173)
376 COG1222 RPT1 ATP-dependent 26S 90.5 0.24 5.1E-06 53.9 3.6 19 90-108 184-202 (406)
377 PF05729 NACHT: NACHT domain 90.5 1.3 2.9E-05 43.3 8.9 42 93-134 2-48 (166)
378 PRK05896 DNA polymerase III su 90.4 0.9 1.9E-05 53.9 8.6 24 92-116 39-62 (605)
379 PRK09111 DNA polymerase III su 90.4 1.2 2.6E-05 53.5 9.8 38 179-220 129-169 (598)
380 PRK14959 DNA polymerase III su 90.4 0.92 2E-05 54.1 8.7 21 92-112 39-59 (624)
381 PF01637 Arch_ATPase: Archaeal 90.2 0.25 5.3E-06 51.6 3.5 97 91-195 20-131 (234)
382 TIGR03881 KaiC_arch_4 KaiC dom 90.2 0.57 1.2E-05 49.1 6.2 50 89-139 18-67 (229)
383 PRK07004 replicative DNA helic 90.1 1.2 2.6E-05 51.9 9.3 108 88-196 210-338 (460)
384 COG1197 Mfd Transcription-repa 90.0 0.78 1.7E-05 57.4 7.9 109 81-195 732-886 (1139)
385 PRK04841 transcriptional regul 90.0 1.3 2.8E-05 56.7 10.6 43 851-893 839-881 (903)
386 PRK13900 type IV secretion sys 90.0 0.39 8.4E-06 53.3 4.9 89 87-192 156-245 (332)
387 COG3267 ExeA Type II secretory 90.0 1.2 2.7E-05 46.4 8.1 98 87-196 46-145 (269)
388 PRK07414 cob(I)yrinic acid a,c 89.8 4.1 8.8E-05 40.6 11.4 129 93-224 23-159 (178)
389 TIGR03880 KaiC_arch_3 KaiC dom 89.8 0.72 1.6E-05 48.2 6.6 53 90-143 15-67 (224)
390 PRK14948 DNA polymerase III su 89.8 1.2 2.7E-05 53.7 9.3 20 92-111 39-58 (620)
391 cd01129 PulE-GspE PulE/GspE Th 89.7 0.68 1.5E-05 49.7 6.4 53 77-130 64-119 (264)
392 PRK07399 DNA polymerase III su 89.7 2.9 6.2E-05 46.2 11.4 58 160-222 103-162 (314)
393 PRK10436 hypothetical protein; 89.7 0.64 1.4E-05 53.9 6.6 47 77-124 202-251 (462)
394 PRK05748 replicative DNA helic 89.6 1.3 2.9E-05 51.6 9.2 107 88-195 200-327 (448)
395 PRK07940 DNA polymerase III su 89.5 1.5 3.2E-05 50.0 9.2 19 92-110 37-55 (394)
396 PRK00080 ruvB Holliday junctio 89.5 0.67 1.5E-05 51.6 6.5 18 92-109 52-69 (328)
397 PRK11034 clpA ATP-dependent Cl 89.5 2 4.4E-05 53.0 10.9 31 82-112 196-228 (758)
398 PHA03372 DNA packaging termina 89.5 2.6 5.5E-05 49.5 11.0 136 92-238 203-351 (668)
399 TIGR03878 thermo_KaiC_2 KaiC d 89.4 0.47 1E-05 50.9 4.9 38 90-127 35-72 (259)
400 COG1202 Superfamily II helicas 89.4 7.7 0.00017 44.9 14.3 176 738-919 618-826 (830)
401 PRK08760 replicative DNA helic 89.2 1.7 3.7E-05 50.9 9.6 106 88-195 226-352 (476)
402 TIGR02639 ClpA ATP-dependent C 89.1 1.6 3.4E-05 54.3 9.9 24 91-114 203-226 (731)
403 PRK06995 flhF flagellar biosyn 89.1 10 0.00022 44.2 15.7 114 91-224 256-377 (484)
404 cd01128 rho_factor Transcripti 89.1 0.33 7.2E-06 51.5 3.4 28 88-116 13-40 (249)
405 PF03969 AFG1_ATPase: AFG1-lik 89.0 4.6 0.0001 45.4 12.6 119 91-238 62-191 (362)
406 CHL00176 ftsH cell division pr 88.9 1.3 2.8E-05 53.6 8.7 19 92-110 217-235 (638)
407 PRK07133 DNA polymerase III su 88.9 2.4 5.2E-05 51.5 10.8 45 735-784 603-648 (725)
408 PHA02542 41 41 helicase; Provi 88.8 2.2 4.8E-05 49.8 10.1 38 89-126 188-225 (473)
409 PF00437 T2SE: Type II/IV secr 88.6 0.48 1E-05 51.2 4.4 43 89-132 125-168 (270)
410 TIGR03346 chaperone_ClpB ATP-d 88.6 1.6 3.4E-05 55.2 9.4 20 91-110 194-213 (852)
411 PF12846 AAA_10: AAA-like doma 88.6 0.63 1.4E-05 50.8 5.4 43 91-133 1-43 (304)
412 TIGR02012 tigrfam_recA protein 88.6 0.72 1.6E-05 50.7 5.7 45 90-134 54-98 (321)
413 PRK08840 replicative DNA helic 88.5 2.1 4.6E-05 49.8 9.8 107 88-195 214-342 (464)
414 PRK03992 proteasome-activating 88.4 1.4 3E-05 50.3 8.1 19 91-109 165-183 (389)
415 KOG0991 Replication factor C, 88.4 1.5 3.2E-05 44.9 7.1 18 92-109 49-66 (333)
416 TIGR02237 recomb_radB DNA repa 88.4 0.94 2E-05 46.7 6.2 40 90-129 11-50 (209)
417 PRK09087 hypothetical protein; 88.4 1.8 3.9E-05 45.3 8.3 17 93-109 46-62 (226)
418 PRK12608 transcription termina 88.2 0.73 1.6E-05 51.4 5.4 39 77-116 116-157 (380)
419 PF00265 TK: Thymidine kinase; 88.2 1.3 2.7E-05 44.4 6.7 37 94-130 4-40 (176)
420 PRK14955 DNA polymerase III su 88.1 2.6 5.6E-05 48.3 10.1 38 179-220 124-164 (397)
421 TIGR00678 holB DNA polymerase 88.1 1.9 4.2E-05 43.6 8.2 110 92-220 15-133 (188)
422 TIGR02655 circ_KaiC circadian 88.0 0.81 1.8E-05 53.8 6.1 60 83-143 250-314 (484)
423 PRK05563 DNA polymerase III su 88.0 1.8 4E-05 51.7 9.0 27 180-210 117-143 (559)
424 cd00544 CobU Adenosylcobinamid 87.9 2.6 5.7E-05 41.8 8.8 45 94-141 2-46 (169)
425 PRK07993 DNA polymerase III su 87.9 2.3 4.9E-05 47.4 9.2 133 77-222 3-147 (334)
426 TIGR00763 lon ATP-dependent pr 87.9 1.4 3E-05 55.1 8.3 26 90-116 346-371 (775)
427 TIGR02538 type_IV_pilB type IV 87.9 0.92 2E-05 54.3 6.5 41 77-118 300-342 (564)
428 TIGR00416 sms DNA repair prote 87.9 2 4.3E-05 49.9 9.0 92 89-195 92-183 (454)
429 PRK09165 replicative DNA helic 87.8 2 4.4E-05 50.5 9.2 107 88-196 214-355 (497)
430 cd01394 radB RadB. The archaea 87.8 0.67 1.4E-05 48.2 4.7 37 90-126 18-54 (218)
431 COG1219 ClpX ATP-dependent pro 87.6 0.33 7.1E-06 51.8 2.2 21 89-109 95-115 (408)
432 TIGR01817 nifA Nif-specific re 87.6 2.9 6.2E-05 50.0 10.5 86 89-195 217-303 (534)
433 PF04408 HA2: Helicase associa 87.6 0.52 1.1E-05 42.6 3.2 56 743-799 3-59 (102)
434 PRK10865 protein disaggregatio 87.5 2 4.4E-05 54.1 9.4 22 91-112 199-220 (857)
435 COG0466 Lon ATP-dependent Lon 87.5 1.5 3.2E-05 52.2 7.5 115 68-211 319-446 (782)
436 PRK08699 DNA polymerase III su 87.4 2.9 6.2E-05 46.4 9.6 34 78-111 3-41 (325)
437 TIGR02640 gas_vesic_GvpN gas v 87.4 1.3 2.8E-05 47.6 6.7 40 83-125 13-52 (262)
438 PF02534 T4SS-DNA_transf: Type 87.2 0.65 1.4E-05 54.6 4.6 56 92-149 45-100 (469)
439 TIGR00665 DnaB replicative DNA 87.2 2.8 6.2E-05 48.6 9.9 107 88-196 192-319 (434)
440 PRK09354 recA recombinase A; P 87.1 1 2.2E-05 50.0 5.6 45 91-135 60-104 (349)
441 PRK08451 DNA polymerase III su 87.0 2.3 5.1E-05 50.1 8.9 50 167-220 100-154 (535)
442 COG1223 Predicted ATPase (AAA+ 87.0 0.78 1.7E-05 47.6 4.3 18 91-108 151-168 (368)
443 PF00154 RecA: recA bacterial 86.9 1.1 2.3E-05 49.2 5.7 49 91-139 53-101 (322)
444 PRK08006 replicative DNA helic 86.8 3.2 7E-05 48.4 10.0 132 88-220 221-383 (471)
445 PRK14965 DNA polymerase III su 86.8 1.5 3.2E-05 52.7 7.4 37 180-220 117-156 (576)
446 PF13481 AAA_25: AAA domain; P 86.8 1.5 3.3E-05 44.4 6.6 55 89-144 30-94 (193)
447 cd01126 TraG_VirD4 The TraG/Tr 86.8 0.45 9.7E-06 54.3 2.9 56 93-150 1-56 (384)
448 PF14617 CMS1: U3-containing 9 86.6 0.84 1.8E-05 48.2 4.5 74 119-192 126-211 (252)
449 KOG2228 Origin recognition com 86.6 4.5 9.8E-05 43.9 9.8 122 90-224 48-182 (408)
450 PRK11608 pspF phage shock prot 86.5 3.7 7.9E-05 45.7 9.8 96 79-195 17-113 (326)
451 TIGR00595 priA primosomal prot 86.4 5.4 0.00012 47.1 11.7 77 328-443 24-100 (505)
452 TIGR01425 SRP54_euk signal rec 86.4 12 0.00026 42.9 13.9 118 93-225 102-226 (429)
453 KOG2004 Mitochondrial ATP-depe 86.2 1.9 4.1E-05 51.1 7.4 114 71-211 410-534 (906)
454 TIGR03743 SXT_TraD conjugative 86.2 2.1 4.5E-05 51.9 8.2 61 90-150 175-239 (634)
455 PHA00012 I assembly protein 86.1 5.4 0.00012 43.5 10.2 31 94-124 4-34 (361)
456 PF08423 Rad51: Rad51; InterP 86.0 2.2 4.7E-05 45.6 7.5 107 84-194 26-145 (256)
457 PLN00020 ribulose bisphosphate 86.0 0.87 1.9E-05 50.4 4.4 74 92-196 149-226 (413)
458 PRK05595 replicative DNA helic 86.0 1.6 3.5E-05 50.7 7.0 106 89-196 199-325 (444)
459 PRK14950 DNA polymerase III su 86.0 2.6 5.6E-05 50.9 8.9 20 92-111 39-58 (585)
460 COG0468 RecA RecA/RadA recombi 85.9 2.7 5.8E-05 45.2 7.9 87 92-194 61-153 (279)
461 TIGR02788 VirB11 P-type DNA tr 85.8 0.78 1.7E-05 50.6 4.0 88 88-192 141-228 (308)
462 KOG0701 dsRNA-specific nucleas 85.7 0.47 1E-05 61.5 2.5 108 330-472 293-400 (1606)
463 cd01123 Rad51_DMC1_radA Rad51_ 85.7 1.3 2.8E-05 46.6 5.6 40 90-129 18-63 (235)
464 TIGR00602 rad24 checkpoint pro 85.5 2.9 6.3E-05 50.4 8.9 18 92-109 111-128 (637)
465 PRK05022 anaerobic nitric oxid 85.5 3.9 8.5E-05 48.5 10.0 86 89-195 208-294 (509)
466 PRK14721 flhF flagellar biosyn 85.5 12 0.00027 42.7 13.5 126 90-236 190-323 (420)
467 PRK14954 DNA polymerase III su 85.3 3.9 8.6E-05 49.2 9.9 38 179-220 124-164 (620)
468 TIGR02397 dnaX_nterm DNA polym 85.2 5.1 0.00011 45.0 10.5 18 93-110 38-55 (355)
469 PRK10917 ATP-dependent DNA hel 85.2 3.2 7E-05 51.1 9.3 81 328-443 309-390 (681)
470 PRK10867 signal recognition pa 85.1 8.7 0.00019 44.2 12.1 118 93-224 102-226 (433)
471 TIGR03819 heli_sec_ATPase heli 85.1 1.5 3.2E-05 48.9 5.8 55 77-132 163-218 (340)
472 KOG0733 Nuclear AAA ATPase (VC 85.0 1.4 3E-05 51.2 5.5 18 91-108 545-562 (802)
473 TIGR02533 type_II_gspE general 85.0 1.3 2.9E-05 51.8 5.6 48 77-125 226-276 (486)
474 PRK13695 putative NTPase; Prov 85.0 13 0.00029 36.9 12.3 30 93-122 2-31 (174)
475 TIGR02238 recomb_DMC1 meiotic 84.8 1.7 3.7E-05 47.8 6.0 97 91-195 96-204 (313)
476 KOG0742 AAA+-type ATPase [Post 84.8 1.4 3.1E-05 48.6 5.2 71 92-195 385-456 (630)
477 KOG0058 Peptide exporter, ABC 84.3 2.9 6.4E-05 49.9 7.9 124 88-213 491-653 (716)
478 TIGR02655 circ_KaiC circadian 83.9 1.2 2.6E-05 52.5 4.6 52 90-142 20-72 (484)
479 COG0210 UvrD Superfamily I DNA 83.6 4.1 8.9E-05 50.1 9.4 86 76-173 2-91 (655)
480 PLN03187 meiotic recombination 83.6 2.5 5.4E-05 47.0 6.7 96 91-194 126-233 (344)
481 COG2812 DnaX DNA polymerase II 83.5 1.9 4.2E-05 50.2 6.0 36 180-219 117-155 (515)
482 TIGR01241 FtsH_fam ATP-depende 83.2 3.3 7.2E-05 48.9 8.1 18 92-109 89-106 (495)
483 COG0630 VirB11 Type IV secreto 83.2 4.7 0.0001 44.4 8.7 55 77-132 128-183 (312)
484 TIGR02868 CydC thiol reductant 83.1 3.2 6.9E-05 49.6 7.9 20 89-108 359-378 (529)
485 COG1110 Reverse gyrase [DNA re 83.0 3.1 6.8E-05 51.3 7.5 80 317-429 113-192 (1187)
486 cd01127 TrwB Bacterial conjuga 83.0 1.4 3E-05 50.7 4.7 46 89-134 40-85 (410)
487 PRK05636 replicative DNA helic 82.8 3.9 8.3E-05 48.2 8.2 39 89-127 263-302 (505)
488 PRK14873 primosome assembly pr 82.8 15 0.00033 44.8 13.4 85 319-442 179-263 (665)
489 TIGR02858 spore_III_AA stage I 82.8 12 0.00026 40.2 11.4 39 77-117 95-136 (270)
490 COG1132 MdlB ABC-type multidru 82.8 2.5 5.4E-05 51.0 7.0 64 88-152 352-418 (567)
491 PF10412 TrwB_AAD_bind: Type I 82.7 1.8 3.9E-05 49.3 5.4 47 89-135 13-59 (386)
492 COG3972 Superfamily I DNA and 82.7 7.3 0.00016 44.3 9.7 66 77-143 163-230 (660)
493 PF02572 CobA_CobO_BtuR: ATP:c 82.6 4.7 0.0001 40.0 7.5 126 94-224 6-140 (172)
494 PRK05580 primosome assembly pr 82.5 9.8 0.00021 46.8 11.9 75 329-443 190-265 (679)
495 TIGR01242 26Sp45 26S proteasom 82.5 3.3 7.2E-05 46.8 7.4 19 91-109 156-174 (364)
496 TIGR03345 VI_ClpV1 type VI sec 82.4 4.9 0.00011 50.6 9.4 113 93-234 598-725 (852)
497 PRK13897 type IV secretion sys 82.2 1.5 3.2E-05 52.7 4.5 58 91-150 158-215 (606)
498 TIGR03754 conj_TOL_TraD conjug 82.2 1.7 3.8E-05 52.0 5.1 54 90-143 179-234 (643)
499 TIGR01243 CDC48 AAA family ATP 82.1 4.1 8.9E-05 50.7 8.6 19 91-109 212-230 (733)
500 KOG2036 Predicted P-loop ATPas 82.1 14 0.00031 43.7 11.9 133 78-227 255-415 (1011)
No 1
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.2e-201 Score=1640.94 Aligned_cols=886 Identities=61% Similarity=0.998 Sum_probs=848.5
Q ss_pred CCccceeeecCCC--CCCCChhhhccccCCCCCchhhhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHH
Q 002357 35 TRSCVHEVAVPSG--YALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAI 112 (931)
Q Consensus 35 ~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i 112 (931)
+.+|.|++++|++ |.|+.+ +.....+++.|||+|+|||..||.++.++++|+|+|||++|||++|+|||
T Consensus 95 ~~~c~HeVavP~~~dY~p~~~---------~~~~~~pAk~YPF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAI 165 (1041)
T KOG0948|consen 95 REGCRHEVAVPPNYDYTPLLP---------KIFGKPPAKTYPFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAI 165 (1041)
T ss_pred cccceeeeecCCccccCcccc---------ccCCCCcccCCCcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHH
Confidence 5699999999977 777545 44567788999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccc
Q 002357 113 AMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192 (931)
Q Consensus 113 ~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH 192 (931)
+.+++.++||||++|++||+||+|++|...|++||++|||+++||++.|+|||+|+|++|||++++.++++.||||||+|
T Consensus 166 A~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIH 245 (1041)
T KOG0948|consen 166 AMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIH 245 (1041)
T ss_pred HHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeecceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHhcCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCcc
Q 002357 193 YMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEK 272 (931)
Q Consensus 193 ~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~ 272 (931)
||.|.+||.+|++.|+++|+++++++||||+||+.+|++|+..++++||+|+++++||+||+||+||.++.++|+++|++
T Consensus 246 YMRDkERGVVWEETIIllP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek 325 (1041)
T KOG0948|consen 246 YMRDKERGVVWEETIILLPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEK 325 (1041)
T ss_pred hccccccceeeeeeEEeccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhchhhHHHHHHHHHhhhcCCCcC--CCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhc
Q 002357 273 EQFREDNFVKLQDTFLKQKIGGRRE--NGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMS 350 (931)
Q Consensus 273 ~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~ 350 (931)
++|+.++|.++++.+.+....++.. +++ .++...++.......+.++++.+...+..|+|||++|++.|+.+|..++
T Consensus 326 ~~FrednF~~am~~l~~~~~~~~~~~~~~k-~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~ 404 (1041)
T KOG0948|consen 326 GKFREDNFQKAMSVLRKAGESDGKKKANKK-GRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMS 404 (1041)
T ss_pred cccchHHHHHHHHHhhccCCCccccccccc-cccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhc
Confidence 9999999999999998766654321 111 1111122234556789999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhc
Q 002357 351 KLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAM 430 (931)
Q Consensus 351 ~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~ 430 (931)
++++++++|+..+..+|.+++..|+++|+.+||++.++++|+|||++|||||.|..|+.|+.+|++|.+++||||+||++
T Consensus 405 kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsi 484 (1041)
T KOG0948|consen 405 KLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSI 484 (1041)
T ss_pred cCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhhcc------------
Q 002357 431 GLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLEG------------ 498 (931)
Q Consensus 431 GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~~~------------ 498 (931)
|+|||+.+|||+...+|||..+|++|+++|+||+|||||+|.|.+|+||++.++.+++...+.|++|.
T Consensus 485 GLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtY 564 (1041)
T KOG0948|consen 485 GLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTY 564 (1041)
T ss_pred ccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----------CCChHHHHHhhHHHHHhhccchhHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhcCh
Q 002357 499 ----------QFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLMSEITRP 568 (931)
Q Consensus 499 ----------~~~~e~~l~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 568 (931)
+++|++|+++||+|||+..++|.+++++.++++++..+.++++..+..|+.+..++..+++.++..+.+|
T Consensus 565 nMiLNLlRvEei~pe~~l~~SF~QFQ~~~~~P~i~~kl~~~~~~~~~i~i~~E~~v~~yh~l~~ql~~~~k~i~~~~~~P 644 (1041)
T KOG0948|consen 565 NMILNLLRVEEISPEYMLERSFHQFQNYKALPDIEEKLKQLEEELDSINIPNEEEVKEYHDLELQLEKYGKDIREVITHP 644 (1041)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhcccCCceEEEecCCccceeEEEEEeecCCCCc-------------ceec-----------------C----CCCC
Q 002357 569 ERVLYYLGSGRLIKVREGGTDWGWGVVVNVVKKPSAG-------------VGTL-----------------P----SRGG 614 (931)
Q Consensus 569 ~~~~~~l~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-----------------~----~~~~ 614 (931)
.++++||++||+|.++.++.+|+|||++++.+..++. ++++ | +.+.
T Consensus 645 ~~~l~fLq~GRlV~v~~g~~d~~WGvvv~f~k~~~~~~~~~~~~p~e~Y~vdvll~~~~~~~~~~~~~~~~p~~~~ek~~ 724 (1041)
T KOG0948|consen 645 KYCLPFLQPGRLVKVKVGGDDFFWGVVVNFIKRKNSSKNSDQVGPHESYIVDVLLHCSTESSPVGAKKVNVPPRPNEKGE 724 (1041)
T ss_pred chhcccccCCceEEEecCCCCCceeEEEEEEeccCCCCCccccCCCcceEEEEEeeeeccccccccCcCCCCCCCCCCCc
Confidence 9999999999999999999999999999988764321 4444 1 5778
Q ss_pred eEEEeecCCccceeeeeeeecCCCCCChhHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCChHHHHHHHHHHHHHHHHH
Q 002357 615 GYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF 694 (931)
Q Consensus 615 ~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 694 (931)
+.++++.++.|.+||++++.+|+++++.+.|..+.+.+.++.++||.|+|++||++||+|.+.++.++.++++.++.++.
T Consensus 725 ~~vvpv~l~~i~~is~~r~~iP~dl~~~d~r~~~~k~v~e~~~rfp~gip~LdPv~dM~I~~~~~~~~~~k~e~lE~~l~ 804 (1041)
T KOG0948|consen 725 MEVVPVLLTLIDAISSIRLYIPKDLRSVDARLSVLKAVQEVKSRFPDGIPLLDPVKDMNIKDVEFKKLVKKIESLEARLE 804 (1041)
T ss_pred eEEEeeeHHHHhhhhHHHhcCcccccCcchHHHHHHHHHHHHHhcCCCCCCcChhhccCccchHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhcCCccCCCccchhhhhhhcccCCch
Q 002357 695 AHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDE 773 (931)
Q Consensus 695 ~~~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~e~~~~~~vL~~lgyid~~~~vt~kGrvA~ei~s~~e 773 (931)
.||.|+. ..++.++.+.++..|..++++|+.+++..++..+++|+++|++|||||||++.+++|.+||||||||+|+||
T Consensus 805 ~hp~~k~~~~~~~~~~f~~K~~l~~~ik~lk~~l~~~~~i~~ldELk~RkRVLrrLG~~t~ddvie~KGrvACEIsSgDE 884 (1041)
T KOG0948|consen 805 SHPLHKSSELEELYKEFQRKETLRAEIKDLKAELKSSQAILQLDELKNRKRVLRRLGYCTSDDVIELKGRVACEISSGDE 884 (1041)
T ss_pred cCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEcceEEEEecccch
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhCCCCCCCHHHHHHHhhccccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccCCc
Q 002357 774 LLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRP 853 (931)
Q Consensus 774 LlltEll~~g~f~~l~p~eiaAllS~~v~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 853 (931)
|+||||||+|.|++|+|+|+||||||||||+++++.+.+.++|+.++.+|++.|++|++|+.+|++++++++|+++ |+|
T Consensus 885 LlLTEliFnG~Fndl~~eq~aaLLSCfVf~eks~e~~~l~~el~~~l~~lqe~ArrIAkVs~ecKlEide~~Yv~s-Fkp 963 (1041)
T KOG0948|consen 885 LLLTELIFNGIFNDLPVEQAAALLSCFVFQEKSSEAPKLKEELAGPLRQLQESARRIAKVSKECKLEIDEEDYVES-FKP 963 (1041)
T ss_pred HHHHHHHHhccccCCCHHHHHHHHhheeehhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHHHh-cCh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhhcCCcccccCCCC
Q 002357 854 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 931 (931)
Q Consensus 854 ~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ell~qi~~aa~~iG~~~L~~k~~~a~~~i~RdiVf~~sLYl 931 (931)
.||+|||+||+|+||++||++|++|||+||||+|||+||||||++||++|||.+|++||++++.+||||||||+||||
T Consensus 964 ~LMdvVy~W~~GatF~eIckmTdvfEGSiIR~~RRLeElLrQl~~AAk~iGnteLe~Kf~~~~~~ikRDIVFAaSLYL 1041 (1041)
T KOG0948|consen 964 ELMDVVYAWAKGATFAEICKMTDVFEGSIIRTFRRLEELLRQLIDAAKVIGNTELENKFEEAIKKIKRDIVFAASLYL 1041 (1041)
T ss_pred HHHHHHHHHHccccHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhceeehhhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
No 2
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=4.3e-160 Score=1342.63 Aligned_cols=865 Identities=38% Similarity=0.635 Sum_probs=756.8
Q ss_pred CCCchhhhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHh
Q 002357 63 PVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 63 ~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
..++++++..|||+|++||++||.++.+|.+|+|+|||++|||++|+|||+.+.+++.|++|++|+|||+||+|++|+..
T Consensus 284 ~~lVpe~a~~~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~t 363 (1248)
T KOG0947|consen 284 YQLVPEMALIYPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKET 363 (1248)
T ss_pred HHhchhHHhhCCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHh
Confidence 45888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEecccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccC
Q 002357 143 FKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSAT 222 (931)
Q Consensus 143 ~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT 222 (931)
|+++|++|||+++||++.|+|||+|+|++|||++...+++++||||||+||++|.+||.+||+++++||+++++|+||||
T Consensus 364 F~DvgLlTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSAT 443 (1248)
T KOG0947|consen 364 FGDVGLLTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSAT 443 (1248)
T ss_pred ccccceeecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCC------c
Q 002357 223 MSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGR------R 296 (931)
Q Consensus 223 ~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~ 296 (931)
+||..+|++|+|.++++.++|+.+..||+||+||+|.. ..++.+++..+.|....+......+++...... +
T Consensus 444 VPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~--~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~ 521 (1248)
T KOG0947|consen 444 VPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTK--KSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDAR 521 (1248)
T ss_pred CCChHHHHHHhhhccCceEEEEecCCCccceEEEEEec--cceehhhcccchhhhhcchhhhhhhccccccccccccccc
Confidence 99999999999999999999999999999999999974 457778899999988888877776642211100 0
Q ss_pred CCCC-----CCCCccCC-----CCCC-C--CCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHH
Q 002357 297 ENGK-----ASGRMAKG-----GSGS-G--GSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTV 363 (931)
Q Consensus 297 ~~~~-----~~~~~~~~-----~~~~-~--~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i 363 (931)
.+++ .+.....| +... + .+.+..++..+...+..|+|||||||+.|+..|+.|...++++..|++.|
T Consensus 522 ~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV 601 (1248)
T KOG0947|consen 522 GGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEV 601 (1248)
T ss_pred ccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHH
Confidence 0010 00001111 1111 1 13588999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEec
Q 002357 364 EQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA 443 (931)
Q Consensus 364 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~ 443 (931)
+-++.+++.+|+++|++|||+..+.+++.|||++||||+.|..|+.|+.+|+.|.++|||||+|||||||||+++|||.+
T Consensus 602 ~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~S 681 (1248)
T KOG0947|consen 602 HLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSS 681 (1248)
T ss_pred HHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc-cCHHHHHhhhhcc----------------------CC
Q 002357 444 VKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ-MEMNTLKDMVLEG----------------------QF 500 (931)
Q Consensus 444 ~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~-~~~~~l~~l~~~~----------------------~~ 500 (931)
..++||..+|.+.|++|+||+|||||+|.|.+|++|+++.+. .+...+++++.|. .+
T Consensus 682 l~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~~~~L~SQFRlTY~MILnLLRve~l 761 (1248)
T KOG0947|consen 682 LRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGGPTRLESQFRLTYGMILNLLRVEAL 761 (1248)
T ss_pred hhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCCCchhhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999876 6889999999988 35
Q ss_pred ChHHHHHhhHHHHHhhccchhHHHHHHHHHHHHhhcccCC----hhhHHHHHHHHHHHHHHHHHHHHHhcChhhHHhccc
Q 002357 501 TAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASG----EAEVAEYHKLKLDIAQLEKKLMSEITRPERVLYYLG 576 (931)
Q Consensus 501 ~~e~~l~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~----~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 576 (931)
..|+||++||.+|...+..|..++.+..+.+++.++.... ..++.+|+....++..+...++.......+.+..|.
T Consensus 762 rvEdm~krSf~E~~s~~~~~~~eq~l~~~~eel~sie~s~c~~~~~~l~kyl~a~~e~~e~~~~l~~~~~~s~~~~~~l~ 841 (1248)
T KOG0947|consen 762 RVEDMMKRSFSEFVSQRLSPEHEQELKELDEELLSIEESDCAIDLKDLRKYLSAYEEITEYNEKLREEKMKSANILRILK 841 (1248)
T ss_pred HHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhh
Confidence 6799999999999999999999999999998888776543 468899999999999999999888888888999999
Q ss_pred CCceEEEecCCccceeEEEEEeecCCCCcceec------C--C-C-------------------------C--CeEE---
Q 002357 577 SGRLIKVREGGTDWGWGVVVNVVKKPSAGVGTL------P--S-R-------------------------G--GGYI--- 617 (931)
Q Consensus 577 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~-~-------------------------~--~~~~--- 617 (931)
.||+|.+++.+.....|+|+....+.+..+.++ | + + . ...+
T Consensus 842 ~GR~vv~k~~~~~~~lg~vl~~s~~t~~~~~~~~~~~~~p~~~~~~~~~~s~a~~~~p~~l~af~~~~~~~~~~~~~~~~ 921 (1248)
T KOG0947|consen 842 EGRVVVLKNLKEENNLGVVLKVSLNTNGRVCVVLVAYLKPLDNKNGSLDPSFALNLIPDSLLAFEKFFPNVPRNVPLGSL 921 (1248)
T ss_pred cCcEEEEcChhhhcccceEEEEecCCCcceEEEEEeeccCCcCcCCCcCcccccccCcchhhccccccCCcccccceecc
Confidence 999999998655667888887776654332111 1 0 0 0 0000
Q ss_pred EeecCCccc----eeeeeee----ecCCCCCC--hhHHHHHHHHHHH---HHHhCCCCCCCCCccccCCCCChHHHHHHH
Q 002357 618 VPVQLPLIS----TLSKIRL----SVPPDLRP--LDARQSILLAVQE---LESRFPQGLPKLNPVKDMKIEDPEVVDLVN 684 (931)
Q Consensus 618 ~~~~~~~i~----~i~~~~~----~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (931)
.+++.+.+. .+.++.+ .++..... ......+.....+ +.+.-..++|+.+|+++.++++.++.+...
T Consensus 922 ~~~~~~~v~~~~~g~~~ie~l~~~~~~~~~~~~~D~~~aal~~~~~~~l~l~~~~~~~~~~~epv~~~k~kd~e~~~~~l 1001 (1248)
T KOG0947|consen 922 NPLYLSGVTAYVKGVPNIEILCGDALRQIIGKVADGQKAALNESTAQVLDLLEGSLETPTWKEPVNDSKLKDDEVVEMLL 1001 (1248)
T ss_pred cccchhccchhhcCCcchhhhhccccccccccccccHHHHHHHHHHHhhhhhhcCccCcchhhhhhhhhhccHHHHHHHH
Confidence 011111111 1111100 01111100 1111112111122 222223458999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhcCCccCCCccchhhh
Q 002357 685 QIEELEHKLFAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGR 763 (931)
Q Consensus 685 ~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~e~~~~~~vL~~lgyid~~~~vt~kGr 763 (931)
+...+.+.+...||+.| .|++|+....+..+++.++++|+.++++ +++.+.++|.+|++||+.+||+|+..+|++|||
T Consensus 1002 ~~~n~~~~~~~~~~i~c~~f~~h~s~~~~~~~~~~ei~~L~~~~sd-~~L~l~pey~~RlevLk~~g~vD~~~~V~lkGR 1080 (1248)
T KOG0947|consen 1002 ERTNLQNLIQGNPCISCPKFDQHYSLARREYKIEKEIENLEFELSD-QSLLLSPEYHNRLEVLKPLGFVDEMRTVLLKGR 1080 (1248)
T ss_pred HHHHHHHHHhcCCccCCccHHHHHHHHHHHHHHHHHhhhhhhhhhh-hhhhhCHHHHHHHHHHhhcCcccccceeeecce
Confidence 99999999999999999 9999999999999999999999999999 899999999999999999999999999999999
Q ss_pred hhhcccCCchhHHHHHHhhCCCCCCCHHHHHHHhhccccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHcCCCCCh
Q 002357 764 AACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNV 843 (931)
Q Consensus 764 vA~ei~s~~eLlltEll~~g~f~~l~p~eiaAllS~~v~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~~~~~~ 843 (931)
|||||+|++|||+|||||+|.|.+|+|+|||||||+||||++....+.+++.+.++-+++.++++++..++..|++.+++
T Consensus 1081 vAceI~s~~ELllteli~dn~l~~l~peeiaallSslV~e~~~e~~~~~~~~l~k~~e~v~~v~~rl~ev~~~~~~~~~~ 1160 (1248)
T KOG0947|consen 1081 VACEINSGNELLLTELIFDNALVDLSPEEIAALLSSLVCEGKTERPPTLTPYLKKGKERVRDVAKRLEEVQSSHQLLQTP 1160 (1248)
T ss_pred eeeeecCCcchhHHHHHHhhhhhhcCHHHHHHHHHHHHhcCccccCCCCChhhhhHHHHHHHHHHHHHHHHHhhccccCc
Confidence 99999999999999999999999999999999999999999987778899999999999999999999999999999887
Q ss_pred h-hhhhccCCccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhhcCC
Q 002357 844 D-EYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRG 922 (931)
Q Consensus 844 ~-~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ell~qi~~aa~~iG~~~L~~k~~~a~~~i~Rd 922 (931)
+ +|.+. ++|+||+|||+||+|+||.+||++|++.||+|||||+||+|+|||+++|+++||||.|.+||++|..+||||
T Consensus 1161 ~e~f~~~-lrF~l~evVYeWA~G~sf~eim~~t~~~EG~iVR~I~RLdE~cre~~~aa~ivGd~~L~~Km~~as~~ikRd 1239 (1248)
T KOG0947|consen 1161 EEEFPCE-LRFGLVEVVYEWARGLSFKEIMELTDVLEGLIVRLIQRLDEVCRELRNAARIVGDPVLHEKMEAASALIKRD 1239 (1248)
T ss_pred hhhcccc-ccccHHHHHHHHHcCCCHHHHHhhhCCcchhHHHHHHHHHHHHHhhhccceecCcHHHHHHHHHHHHHhccC
Confidence 7 56666 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCC
Q 002357 923 IMFSNSLYL 931 (931)
Q Consensus 923 iVf~~sLYl 931 (931)
|||++|||+
T Consensus 1240 IVFaaSLY~ 1248 (1248)
T KOG0947|consen 1240 IVFAASLYL 1248 (1248)
T ss_pred ccchhhccC
Confidence 999999997
No 3
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.9e-129 Score=1145.35 Aligned_cols=875 Identities=44% Similarity=0.679 Sum_probs=751.4
Q ss_pred eeeecCCCCCCCChhhhccccCCCCCchhhhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCC
Q 002357 40 HEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK 119 (931)
Q Consensus 40 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~ 119 (931)
+..+.|+.|....... .+.....+...+||+|++||++|+.++.+|++|+|+||||||||++++||+..++.++
T Consensus 89 ~~~~~~~~~~~~~~a~------~~~~~~~~~~~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~ 162 (1041)
T COG4581 89 SDVAVPDDYDMVPDAE------SPFDLAPPAREYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDG 162 (1041)
T ss_pred cccCCCchhcccchhh------cccccCcHHHhCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcC
Confidence 3477777765544310 0111467888999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEcCchhhHHHHHHHHHHhcCCe----EEEecccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCC
Q 002357 120 QRVIYTSPLKALSNQKYRELHQEFKDV----GLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 120 ~rvl~l~P~kaL~~Q~~~~l~~~~~~v----g~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
.+++|++|+|||+||+|++|...|+++ |++|||+++|++++|+|||+|+|++|+|++...++++.+|||||+|||+
T Consensus 163 qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~ 242 (1041)
T COG4581 163 QRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIG 242 (1041)
T ss_pred CceEeccchhhhhhhHHHHHHHHhhhhhhhccceecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeecc
Confidence 999999999999999999999999988 9999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhcCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchh
Q 002357 196 DRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQF 275 (931)
Q Consensus 196 ~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~ 275 (931)
|.+||.+||++|+++|+++|+|+||||+||+.+|+.|++..+..+++++++++||+|++||+++. .+++.++++.+.+
T Consensus 243 D~eRG~VWEE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~--~~l~~lvde~~~~ 320 (1041)
T COG4581 243 DRERGVVWEEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVG--KGLFDLVDEKKKF 320 (1041)
T ss_pred ccccchhHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecC--Cceeeeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999875 6799999999998
Q ss_pred chhhHHHHHHHHHhhhcCCCcCCC---CCCCCccC--CCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhc
Q 002357 276 REDNFVKLQDTFLKQKIGGRRENG---KASGRMAK--GGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMS 350 (931)
Q Consensus 276 ~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~ 350 (931)
...++.++...+............ +......+ ++..........+++.+...+..|+|+|++|++.|+.++..+.
T Consensus 321 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~ 400 (1041)
T COG4581 321 NAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILS 400 (1041)
T ss_pred hhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhc
Confidence 888888887777633210000000 00000000 1112223344778999999999999999999999999999999
Q ss_pred cCCCCChHHHHH-HHHHHHHHHhhcCcccCCCh-hHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchh
Q 002357 351 KLDFNTQEEKDT-VEQVFQNAVDCLNEEDRNLP-AIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETF 428 (931)
Q Consensus 351 ~~~~~~~~e~~~-i~~~~~~~~~~l~~~d~~l~-~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~l 428 (931)
...+...+++.. +..++..++..|+++|+.+| ++..+.++|.+|+++||+||.|..|+.++++|..|.++|||||+|+
T Consensus 401 ~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~ 480 (1041)
T COG4581 401 TLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETF 480 (1041)
T ss_pred ccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhh
Confidence 888877777766 99999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCcc-CHHHHHhhhhcc---------
Q 002357 429 AMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQM-EMNTLKDMVLEG--------- 498 (931)
Q Consensus 429 a~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~-~~~~l~~l~~~~--------- 498 (931)
++|+|||+.++|+.+..||||..++++++++|+||+|||||+|.|..|++|++..+.. ++.....+..++
T Consensus 481 s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s~f~ 560 (1041)
T COG4581 481 AIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFR 560 (1041)
T ss_pred hhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchhhee
Confidence 9999999999999999999999999999999999999999999999999999965554 478888887777
Q ss_pred -------------CCC-hHHHHHhhHHHHHhhccchhHHHHHHHHHHHHhhcccC----ChhhHHHHHHHHHHHHHHHHH
Q 002357 499 -------------QFT-AEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDAS----GEAEVAEYHKLKLDIAQLEKK 560 (931)
Q Consensus 499 -------------~~~-~e~~l~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~----~~~~~~~y~~~~~~~~~~~~~ 560 (931)
++. ++.++++||+||++...++...+.+..+++++..+... ++.++..| ...+..++++
T Consensus 561 ~sy~milnll~v~~l~~~e~ll~~Sf~q~~~~~~l~~~~~~l~~~~~~~~~i~~~~~~~d~~~~~~~---~~~~~k~~~~ 637 (1041)
T COG4581 561 LSYNMILNLLRVEGLQTAEDLLERSFAQFQNSRSLPEIVEKLERLEKELNDIATELFGTDENDAPKL---SLDYEKLRKK 637 (1041)
T ss_pred cchhHHHhhhhhcccCcHHHHHHhhHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhccccccchHHH---HHHHHHHHHH
Confidence 455 89999999999999999999999999999998887765 45555555 3344555666
Q ss_pred HHHHhcChhhHHhcccCCceEEEecCCccceeEEEEEeecCCCC----c-----ceecC------------------CCC
Q 002357 561 LMSEITRPERVLYYLGSGRLIKVREGGTDWGWGVVVNVVKKPSA----G-----VGTLP------------------SRG 613 (931)
Q Consensus 561 ~~~~~~~~~~~~~~l~~g~~i~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~------------------~~~ 613 (931)
+.....+...++..++.||++.++.+...+.||.++....+.+. . +.+.| .+.
T Consensus 638 l~~~~~~~a~~~r~~~~gr~~~~~~~~~~~~~g~~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1041)
T COG4581 638 LNEEMRLQAAGLRALRKGRVVQIKDGLAALFWGRLLKLTKRYTTKLTDHELYLAVLVEPNADFSFPRPLVKAMPHMNRES 717 (1041)
T ss_pred HHHHHHHHHhHHHHhhhcceeeeecchhhhhheeeeeeccccccccccchheehheecccCCccchhHHhhccccccccc
Confidence 66666667778899999999999988777889988877766220 0 11111 011
Q ss_pred ------CeEEEeecCCccceeeeeeeecCCCCCChhHHHHHHHHHHHHHHhCCCC-CCCCCccccCCCCChHHHHHHHHH
Q 002357 614 ------GGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQG-LPKLNPVKDMKIEDPEVVDLVNQI 686 (931)
Q Consensus 614 ------~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 686 (931)
...+..+++..+..+....+.+|........+..-...+......+.++ .+.++++..|++.++++.......
T Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~v~~~~~~~~~~~~~~~~~ 797 (1041)
T COG4581 718 RWLVKILFRISFVYLLNATEILELILTMPRRLLSRQGKLRRGEPSNEAIAAGLDGNEKILENVVEMKIQVPELTVSLLKL 797 (1041)
T ss_pred ccccccceeeeeeeeccccccchhhhcCCHhHhhcccchhccchhHHHHHhccccchhhhhhcccccccchhHHHHHHHH
Confidence 1223344444444555555666644322222222233444555555554 458889999999999999999999
Q ss_pred HHHHHHHHcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhcCCccCCCccchhhhhh
Q 002357 687 EELEHKLFAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAA 765 (931)
Q Consensus 687 ~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~e~~~~~~vL~~lgyid~~~~vt~kGrvA 765 (931)
......+..+|.+.| .+++|++.......|..+++++...+ ..+.+.+++..+.++|+.+||++.+.+|+.|||+|
T Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l~~~~---~~~~~l~~~~~l~~~l~~~g~~~~~~~v~~kGr~a 874 (1041)
T COG4581 798 RFGRYHLSENPLMNFDGAERLIENELLLSDLQAEIEDLSSSI---EALSFLDDYKTLQEVLKKLGFIEDNAVVLIKGRVA 874 (1041)
T ss_pred hhcccccCCCccccchHHHHHHHhHhHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHhhcCCCccccccccccee
Confidence 999999999999999 99999999999999999999999998 45567889999999999999999989999999999
Q ss_pred hcccCCchhHHHHHHhhCCCCCCCHHHHHHHhhccccccCCc----ccccccHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 002357 766 CLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSS----EQINLRMELAKPLQQLQESARKIAEIQNECKLEV 841 (931)
Q Consensus 766 ~ei~s~~eLlltEll~~g~f~~l~p~eiaAllS~~v~~~~~~----~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~~~~ 841 (931)
|||++++|||||||||+|.|++|+|+|+||++|||||+++++ +.+.++|.|++++..+.+++.+|.++++.|++++
T Consensus 875 ~eI~s~~ellL~e~i~~g~f~~l~p~e~aallSa~v~e~~~~d~~~~~~~~~~~l~~~~~~l~e~~~kl~~~~~~~~i~~ 954 (1041)
T COG4581 875 AEISSEDELLLTELIFSGEFNDLEPEELAALLSAFVFEEKTDDGTAEAPEITPALRDALLRLLELARKLNKDQNSSQIEI 954 (1041)
T ss_pred eeecCCCchHHHHHHHcCCccCCCHHHHHHHHHheeeccCCcccccccccCCHHHHhHHHHHHHHHHHHHHHHHhcCCcC
Confidence 999999999999999999999999999999999999999986 4467889999999999999999999999999999
Q ss_pred ChhhhhhccCCccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhhcC
Q 002357 842 NVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRR 921 (931)
Q Consensus 842 ~~~~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ell~qi~~aa~~iG~~~L~~k~~~a~~~i~R 921 (931)
.++ ++. +.++||++||+||+|++|.+||.+|++.|||+||+++|++|+|+|+.+|+.++||++|.+||..|+..|||
T Consensus 955 ~~~--l~~-~~~~lm~vv~~wa~g~s~~~i~~~~~~~eGs~vR~~~r~~ell~ql~~aa~~ig~~~L~~k~~~~~~~irr 1031 (1041)
T COG4581 955 YPE--LND-FSVGLMEVVYEWARGLSFADICGLTSLLEGSFVRIFRRLRELLRQLRKAASVIGNPELEEKAYRAIQEIRR 1031 (1041)
T ss_pred Ccc--ccc-ccccHHHHHHHHHhhcchhhhhcCCcccccchhhhhhHHHHHHHHhhhcccccCCHHHHHHHHHHHHhhhc
Confidence 876 667 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCC
Q 002357 922 GIMFSNSLYL 931 (931)
Q Consensus 922 diVf~~sLYl 931 (931)
||||++|||+
T Consensus 1032 ~iv~~~sly~ 1041 (1041)
T COG4581 1032 DIVFVDSLYL 1041 (1041)
T ss_pred CeEecccccC
Confidence 9999999996
No 4
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-49 Score=485.90 Aligned_cols=367 Identities=29% Similarity=0.442 Sum_probs=286.4
Q ss_pred hccCCCC-CCHHHHHHHHH-HhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhc--C-
Q 002357 70 AKTYSFE-LDPFQRVSVAC-LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEF--K- 144 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~-l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~--~- 144 (931)
....+|+ |+|+|.+|++. +..|+|++++||||||||++|++|++..+.++.+++|++|+++|++|++++|+.+. +
T Consensus 16 l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~~~~g~ 95 (737)
T PRK02362 16 YEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFERFEELGV 95 (737)
T ss_pred HHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhhcCCC
Confidence 3346776 99999999998 78999999999999999999999999999889999999999999999999999762 3
Q ss_pred CeEEEecccccC----CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEE
Q 002357 145 DVGLMTGDVTLS----PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMV 217 (931)
Q Consensus 145 ~vg~~tGd~~~~----~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v 217 (931)
.++.++|+.... ..++|+|+|||++.+++.++...++++++||+||+|.+.+.+||..++.++..+ ++..|+|
T Consensus 96 ~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii 175 (737)
T PRK02362 96 RVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVV 175 (737)
T ss_pred EEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEE
Confidence 788999987654 358999999999999888776778999999999999999999999999887654 5789999
Q ss_pred EeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcC
Q 002357 218 FLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRE 297 (931)
Q Consensus 218 ~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 297 (931)
+||||++|..++++|++.. .+...+||+++...++..+ .++. .+.....
T Consensus 176 ~lSATl~n~~~la~wl~~~------~~~~~~rpv~l~~~v~~~~--~~~~-~~~~~~~---------------------- 224 (737)
T PRK02362 176 ALSATIGNADELADWLDAE------LVDSEWRPIDLREGVFYGG--AIHF-DDSQREV---------------------- 224 (737)
T ss_pred EEcccCCCHHHHHHHhCCC------cccCCCCCCCCeeeEecCC--eecc-ccccccC----------------------
Confidence 9999999999999999742 3566789999876654321 1110 0000000
Q ss_pred CCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCC--CChHHHHHHHHHHHHHHhhcC
Q 002357 298 NGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDF--NTQEEKDTVEQVFQNAVDCLN 375 (931)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~--~~~~e~~~i~~~~~~~~~~l~ 375 (931)
.. .........+.+.+. .+.++||||+|++.|+.+|..|..... ....+...+....+ .+.
T Consensus 225 --------~~---~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~----~l~ 287 (737)
T PRK02362 225 --------EV---PSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAE----EIR 287 (737)
T ss_pred --------CC---ccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHH----HHH
Confidence 00 000111222222222 457899999999999999999965321 11222222222222 221
Q ss_pred cccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCC-CCcc
Q 002357 376 EEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGD-SHRY 454 (931)
Q Consensus 376 ~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~-~~~~ 454 (931)
.... ......+..++..||++|||||++.+|+.+++.|++|.++|||||+++++|||+|+++|||.+...||+. +..|
T Consensus 288 ~~~~-~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~ 366 (737)
T PRK02362 288 EVSD-TETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQP 366 (737)
T ss_pred hccC-ccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCcee
Confidence 1110 1123467888999999999999999999999999999999999999999999999999999988889865 3468
Q ss_pred cCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 455 IGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 455 ~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
.+..+|.||+|||||.|.+..|.+++++.+.
T Consensus 367 ~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 367 IPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred CCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 9999999999999999999999999999764
No 5
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-49 Score=442.37 Aligned_cols=337 Identities=20% Similarity=0.239 Sum_probs=265.0
Q ss_pred CchhhhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC---------CCEEEEEcCchhhHHH
Q 002357 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---------KQRVIYTSPLKALSNQ 134 (931)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~---------~~rvl~l~P~kaL~~Q 134 (931)
......+..+|+ |+|+|.++|+.+..|+|++..|.||||||++|++|++..+.. ++++||++|||+|++|
T Consensus 101 ~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~Q 180 (519)
T KOG0331|consen 101 ELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQ 180 (519)
T ss_pred HHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHH
Confidence 333445567898 999999999999999999999999999999999999988864 6799999999999999
Q ss_pred HHHHHHHhcC----CeEEEecccccC-------CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHH
Q 002357 135 KYRELHQEFK----DVGLMTGDVTLS-------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVW 203 (931)
Q Consensus 135 ~~~~l~~~~~----~vg~~tGd~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~ 203 (931)
+.+++.++.. ...+++|+.+.. .+.+|+|+||++|.+++..+...++++.++|+||||+|+|++|...+
T Consensus 181 V~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI 260 (519)
T KOG0331|consen 181 VQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQI 260 (519)
T ss_pred HHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHH
Confidence 9999999987 356788998764 46899999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHH
Q 002357 204 EESIIFL-PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVK 282 (931)
Q Consensus 204 ~~ii~~l-~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (931)
+.|+..+ ++..|++++|||.|.... .....+..++..+.......--..+ +..++..+++.
T Consensus 261 ~~Il~~i~~~~rQtlm~saTwp~~v~--~lA~~fl~~~~~i~ig~~~~~~a~~-----~i~qive~~~~----------- 322 (519)
T KOG0331|consen 261 RKILSQIPRPDRQTLMFSATWPKEVR--QLAEDFLNNPIQINVGNKKELKANH-----NIRQIVEVCDE----------- 322 (519)
T ss_pred HHHHHhcCCCcccEEEEeeeccHHHH--HHHHHHhcCceEEEecchhhhhhhc-----chhhhhhhcCH-----------
Confidence 9999999 455689999999985442 2222222334443332211000000 00011111110
Q ss_pred HHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHH
Q 002357 283 LQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDT 362 (931)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~ 362 (931)
..+...+..++..+......++||||++++.|+.++..+...+++
T Consensus 323 ----------------------------~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~------- 367 (519)
T KOG0331|consen 323 ----------------------------TAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWP------- 367 (519)
T ss_pred ----------------------------HHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcc-------
Confidence 011234455666555456679999999999999999999886665
Q ss_pred HHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEe
Q 002357 363 VEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFT 442 (931)
Q Consensus 363 i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~ 442 (931)
...+||+.++.+|+.+++.|++|...|||||+++|+|+|+|++++||
T Consensus 368 --------------------------------a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVI- 414 (519)
T KOG0331|consen 368 --------------------------------AVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVI- 414 (519)
T ss_pred --------------------------------eeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEE-
Confidence 47899999999999999999999999999999999999999999999
Q ss_pred cceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc--cCHHHHHhhhh
Q 002357 443 AVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ--MEMNTLKDMVL 496 (931)
Q Consensus 443 ~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~--~~~~~l~~l~~ 496 (931)
+||. |.++++|+||+||+||+|.. |.++.+.+.. .....+.+.+.
T Consensus 415 ---nydf----P~~vEdYVHRiGRTGRa~~~--G~A~tfft~~~~~~a~~l~~~l~ 461 (519)
T KOG0331|consen 415 ---NYDF----PNNVEDYVHRIGRTGRAGKK--GTAITFFTSDNAKLARELIKVLR 461 (519)
T ss_pred ---eCCC----CCCHHHHHhhcCccccCCCC--ceEEEEEeHHHHHHHHHHHHHHH
Confidence 8999 99999999999999999985 5555555443 23344444443
No 6
>PF08148 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 This C-terminal domain is found in DOB1/SK12/helY-like DEAD box helicases [].; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; PDB: 4A4Z_A 2XGJ_B 3L9O_A.
Probab=100.00 E-value=5.4e-51 Score=407.53 Aligned_cols=177 Identities=47% Similarity=0.793 Sum_probs=147.9
Q ss_pred ccCCCccchhhhhhhcccCCchhHHHHHHhhCCCCCCCHHHHHHHhhccccccCCccc---ccccHHHHHHHHHHHHHHH
Q 002357 752 IDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQ---INLRMELAKPLQQLQESAR 828 (931)
Q Consensus 752 id~~~~vt~kGrvA~ei~s~~eLlltEll~~g~f~~l~p~eiaAllS~~v~~~~~~~~---~~~~~~l~~~~~~l~~~~~ 828 (931)
||++++||+|||+||+|+++|||++|||||+|+|++|+|+||||+|||||||++.++. ..+++.+.++++++.++++
T Consensus 1 id~~~~vt~kGr~a~~I~~~~eLl~te~l~~g~f~~L~p~elAa~lS~~v~e~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 80 (180)
T PF08148_consen 1 IDEDNVVTLKGRVACEIYSEDELLLTELLFSGVFDDLDPAELAALLSCFVYEPRREDEEERYPPSPRLREALEQLQEIAE 80 (180)
T ss_dssp B-TTS-BSHHHHHHCC--SSTHHHHHHHHHCTCCCCS-HHHHHHHHHHHC-----SS---------HHHHHHHHHHHHHH
T ss_pred CCCCCccCHHHHHHHHHcCcccHHHHHHHHcCCCCCCCHHHHHHHHHHhhcccccCcccccccccHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999988765 2233489999999999999
Q ss_pred HHHHHHHHcCCCCChhhhhhccCCccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhhhcCCHHH
Q 002357 829 KIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNL 908 (931)
Q Consensus 829 ~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ell~qi~~aa~~iG~~~L 908 (931)
+|.+++.+||+ +.++|+.+ ++|+||++||+||+|+||.+||+.|+++|||||||+||++||||||++||+++||++|
T Consensus 81 ~l~~~~~~~~l--~~~~~~~~-~~~~l~~~v~~Wa~G~~~~~i~~~t~l~EGdiVR~~rRl~dlLrql~~aa~~~g~~~L 157 (180)
T PF08148_consen 81 RLAKVEREHGL--DEEEYVER-FDPGLMEVVYAWASGASFAEILEMTDLFEGDIVRWIRRLIDLLRQLANAAKIIGDPEL 157 (180)
T ss_dssp HHHHHHHHTT---HHHHHHHC-STTTTHHHHHHHHCT--HHHHCCT-SS-HHHHHHHHHHHHHHHHHHHHHHHCCT-HHH
T ss_pred HHHHHHHHhCC--CCcccccC-CCccHHHHHHHHHCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 99999999999 77789999 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCcccccCCCC
Q 002357 909 EKKFAAASESLRRGIMFSNSLYL 931 (931)
Q Consensus 909 ~~k~~~a~~~i~RdiVf~~sLYl 931 (931)
++|+++|+++|||||||++||||
T Consensus 158 ~~~~~~a~~~i~R~iV~~~SLYl 180 (180)
T PF08148_consen 158 AEKAREAIDLIRRDIVFASSLYL 180 (180)
T ss_dssp HHHHHHHHHHHSHCCCC---TT-
T ss_pred HHHHHHHHHhccCCccccccccC
Confidence 99999999999999999999997
No 7
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-47 Score=467.11 Aligned_cols=375 Identities=30% Similarity=0.442 Sum_probs=288.3
Q ss_pred hhccCCCC-CCHHHHHHHHH-HhcCCcEEEEcCCCCCcHHHHHHHHHHHH-hCCCEEEEEcCchhhHHHHHHHHHHhc--
Q 002357 69 MAKTYSFE-LDPFQRVSVAC-LERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEF-- 143 (931)
Q Consensus 69 ~~~~~~f~-l~~~Q~~ai~~-l~~g~~vlv~apTGsGKTl~~~l~i~~~l-~~~~rvl~l~P~kaL~~Q~~~~l~~~~-- 143 (931)
.....+|+ |+|+|.+|++. +..|+|++++||||||||++|++|++..+ ..+.++||++|+++|++|++++|..+.
T Consensus 15 ~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~~~~ 94 (720)
T PRK00254 15 VLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDWEKL 94 (720)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHHhhc
Confidence 33446886 99999999986 78999999999999999999999998876 467899999999999999999998642
Q ss_pred C-CeEEEecccccC----CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEE
Q 002357 144 K-DVGLMTGDVTLS----PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVF 218 (931)
Q Consensus 144 ~-~vg~~tGd~~~~----~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~ 218 (931)
+ .++.++|+.... ..++|+|+|||++..++.++...++++++||+||+|.+.+.+||..++.++..++...|+|+
T Consensus 95 g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qiI~ 174 (720)
T PRK00254 95 GLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQILG 174 (720)
T ss_pred CCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCcEEE
Confidence 2 788899987643 35899999999999988777677899999999999999999999999999999999999999
Q ss_pred eccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCC
Q 002357 219 LSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRREN 298 (931)
Q Consensus 219 lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 298 (931)
+|||++|..++++|++.. .+....||+|+...++..+ +......... .+
T Consensus 175 lSATl~n~~~la~wl~~~------~~~~~~rpv~l~~~~~~~~----~~~~~~~~~~---~~------------------ 223 (720)
T PRK00254 175 LSATVGNAEELAEWLNAE------LVVSDWRPVKLRKGVFYQG----FLFWEDGKIE---RF------------------ 223 (720)
T ss_pred EEccCCCHHHHHHHhCCc------cccCCCCCCcceeeEecCC----eeeccCcchh---cc------------------
Confidence 999999999999999742 3556789998865443221 1111100000 00
Q ss_pred CCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCC--CCChHHHHHHHHHHHHHHhhcCc
Q 002357 299 GKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLD--FNTQEEKDTVEQVFQNAVDCLNE 376 (931)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~--~~~~~e~~~i~~~~~~~~~~l~~ 376 (931)
......++..... .+.++||||+||+.|+.+|..|.+.. +....+...+.. ....+.
T Consensus 224 ---------------~~~~~~~~~~~i~-~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~----~~~~~~- 282 (720)
T PRK00254 224 ---------------PNSWESLVYDAVK-KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKE----LADSLE- 282 (720)
T ss_pred ---------------hHHHHHHHHHHHH-hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHH----HHHHHh-
Confidence 0011122222222 35689999999999999998885421 111111111111 111111
Q ss_pred ccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccC
Q 002357 377 EDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIG 456 (931)
Q Consensus 377 ~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s 456 (931)
..+....+..++..||++|||||++.+|+.+++.|++|.++|||||+++++|||+|++++||.....|+.....+.+
T Consensus 283 ---~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~ 359 (720)
T PRK00254 283 ---ENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIP 359 (720)
T ss_pred ---cCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCC
Confidence 11223467788899999999999999999999999999999999999999999999999999988888755556678
Q ss_pred HHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhhcc
Q 002357 457 SGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLEG 498 (931)
Q Consensus 457 ~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~~~ 498 (931)
..+|.||+|||||.|.+..|.++++++.....+.+++++.+.
T Consensus 360 ~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~ 401 (720)
T PRK00254 360 VLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIFGK 401 (720)
T ss_pred HHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHhCC
Confidence 899999999999999999999999997643234466666654
No 8
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=7.1e-49 Score=466.86 Aligned_cols=376 Identities=34% Similarity=0.448 Sum_probs=286.1
Q ss_pred hhhhccCCC-CCCHHHHHHHHHH-hcCCcEEEEcCCCCCcHHHHHHHHHHHHhC-CCEEEEEcCchhhHHHHHHHHH--H
Q 002357 67 GEMAKTYSF-ELDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSPLKALSNQKYRELH--Q 141 (931)
Q Consensus 67 ~~~~~~~~f-~l~~~Q~~ai~~l-~~g~~vlv~apTGsGKTl~~~l~i~~~l~~-~~rvl~l~P~kaL~~Q~~~~l~--~ 141 (931)
..+.+..++ ++.+-|+.++... ..++|++|+||||||||++|+++|...+.+ +.+++|++|+|||++|++++|+ +
T Consensus 21 ~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~ 100 (766)
T COG1204 21 LEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLE 100 (766)
T ss_pred HHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHH
Confidence 344444555 5888888888765 557999999999999999999999999877 5999999999999999999999 4
Q ss_pred hcC-CeEEEecccccCC----CCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCC---C
Q 002357 142 EFK-DVGLMTGDVTLSP----NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPP---A 213 (931)
Q Consensus 142 ~~~-~vg~~tGd~~~~~----~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~---~ 213 (931)
.++ +|+..|||....+ .++|+|+|||++.+.+.+...++.++++||+||+|.+.|..||++.+.++..+.. .
T Consensus 101 ~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~ 180 (766)
T COG1204 101 ELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNEL 180 (766)
T ss_pred hcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcc
Confidence 455 9999999998654 6899999999999999888888999999999999999999999999999876643 4
Q ss_pred ceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcC
Q 002357 214 IKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIG 293 (931)
Q Consensus 214 ~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 293 (931)
+|+++||||+||..++++|++... +.+.++|+|+..-++... .....+...+..+
T Consensus 181 ~rivgLSATlpN~~evA~wL~a~~------~~~~~rp~~l~~~v~~~~---~~~~~~~~~k~~~---------------- 235 (766)
T COG1204 181 IRIVGLSATLPNAEEVADWLNAKL------VESDWRPVPLRRGVPYVG---AFLGADGKKKTWP---------------- 235 (766)
T ss_pred eEEEEEeeecCCHHHHHHHhCCcc------cccCCCCcccccCCccce---EEEEecCcccccc----------------
Confidence 899999999999999999998542 255677777654332211 1111111100000
Q ss_pred CCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhcc--CCCCChHHHHHHHHHHHHHH
Q 002357 294 GRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSK--LDFNTQEEKDTVEQVFQNAV 371 (931)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~--~~~~~~~e~~~i~~~~~~~~ 371 (931)
......+..++.... ..+++++|||+||+.+...|..+.. .+..+..+.........+..
T Consensus 236 -----------------~~~~~~~~~~v~~~~-~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~ 297 (766)
T COG1204 236 -----------------LLIDNLALELVLESL-AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPIL 297 (766)
T ss_pred -----------------ccchHHHHHHHHHHH-hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccc
Confidence 000111222222222 2567999999999999999999974 12222221111111111100
Q ss_pred hhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecC-CC
Q 002357 372 DCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD-GD 450 (931)
Q Consensus 372 ~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d-~~ 450 (931)
. .+......+.+.+++.+|+++||+||++.+|..+++.|+.|+++||+||+|+|+|+|.|+.+|||.+...|| ..
T Consensus 298 ~----~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~ 373 (766)
T COG1204 298 I----PETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKG 373 (766)
T ss_pred c----ccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCC
Confidence 0 111112236889999999999999999999999999999999999999999999999999999999999999 33
Q ss_pred CCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHH
Q 002357 451 SHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMN 489 (931)
Q Consensus 451 ~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~ 489 (931)
+.+++++-+|+||.|||||.|.|..|..+++++...+..
T Consensus 374 g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~ 412 (766)
T COG1204 374 GIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELE 412 (766)
T ss_pred CeEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchh
Confidence 467999999999999999999999999999996553433
No 9
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3e-47 Score=461.63 Aligned_cols=365 Identities=29% Similarity=0.452 Sum_probs=289.5
Q ss_pred ccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC---CeE
Q 002357 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK---DVG 147 (931)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~---~vg 147 (931)
...+|+|+++|.++++.+.+|+|++++||||||||++|++++...+..+.+++|++|+++|++|++++|.++.. .++
T Consensus 17 ~~~~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~ 96 (674)
T PRK01172 17 TGNDFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLRSLGMRVK 96 (674)
T ss_pred hhCCCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHhhcCCeEE
Confidence 44588999999999999999999999999999999999999999988889999999999999999999987532 688
Q ss_pred EEecccccC----CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHh---cCCCceEEEec
Q 002357 148 LMTGDVTLS----PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF---LPPAIKMVFLS 220 (931)
Q Consensus 148 ~~tGd~~~~----~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~---l~~~~q~v~lS 220 (931)
..+|+.... ..++|+|+|||++..++.+....++++++||+||+|.+.+.+||..++.++.. ++++.|+|++|
T Consensus 97 ~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lS 176 (674)
T PRK01172 97 ISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALS 176 (674)
T ss_pred EEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEe
Confidence 888987643 35899999999999988877777899999999999999999999999987654 45789999999
Q ss_pred cCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCC
Q 002357 221 ATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGK 300 (931)
Q Consensus 221 AT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 300 (931)
||++|..++++|++. ..+....||+|+...+.... ..+ .+...
T Consensus 177 ATl~n~~~la~wl~~------~~~~~~~r~vpl~~~i~~~~--~~~--~~~~~--------------------------- 219 (674)
T PRK01172 177 ATVSNANELAQWLNA------SLIKSNFRPVPLKLGILYRK--RLI--LDGYE--------------------------- 219 (674)
T ss_pred CccCCHHHHHHHhCC------CccCCCCCCCCeEEEEEecC--eee--ecccc---------------------------
Confidence 999999999999963 23556788999875443211 111 00000
Q ss_pred CCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCC
Q 002357 301 ASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRN 380 (931)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~ 380 (931)
.....+..++.... ..++++||||+|++.|+.++..|......... . .+...+..
T Consensus 220 -----------~~~~~~~~~i~~~~-~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~------------~-~~~~~~~~ 274 (674)
T PRK01172 220 -----------RSQVDINSLIKETV-NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFND------------F-KVSSENNN 274 (674)
T ss_pred -----------cccccHHHHHHHHH-hCCCcEEEEeccHHHHHHHHHHHHHhhhhccc------------c-cccccccc
Confidence 00111223333322 24578999999999999999998653111000 0 00000000
Q ss_pred ChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHH
Q 002357 381 LPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEY 460 (931)
Q Consensus 381 l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y 460 (931)
..-..+..++..||++|||||++.+|+.+++.|++|.++|||||+++++|||+|+..|||.....|+....+|+++.+|
T Consensus 275 -~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~~~~~s~~~~ 353 (674)
T PRK01172 275 -VYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEI 353 (674)
T ss_pred -cccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcCceEeCCCCceeCCHHHH
Confidence 0113567788899999999999999999999999999999999999999999999999999888898877889999999
Q ss_pred HHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhhcc
Q 002357 461 IQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLEG 498 (931)
Q Consensus 461 ~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~~~ 498 (931)
.||+|||||.|.++.|.+++++....+.+.+++++.+.
T Consensus 354 ~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~ 391 (674)
T PRK01172 354 KQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGE 391 (674)
T ss_pred HHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCC
Confidence 99999999999999999999887654556677777654
No 10
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.8e-48 Score=399.29 Aligned_cols=318 Identities=20% Similarity=0.256 Sum_probs=262.4
Q ss_pred cCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC---CCEEEEEcCchhhHHHHHHHHHHhcCC--
Q 002357 72 TYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYRELHQEFKD-- 145 (931)
Q Consensus 72 ~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~---~~rvl~l~P~kaL~~Q~~~~l~~~~~~-- 145 (931)
..+|. |+++|+++||.+++|++|+..|.||||||.+|.+||++.+-. ..+++|++|||+|+.|+...|..+...
T Consensus 78 ~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~ig 157 (476)
T KOG0330|consen 78 ELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIG 157 (476)
T ss_pred HhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccC
Confidence 34677 999999999999999999999999999999999999999843 368999999999999999999999774
Q ss_pred --eEEEecccc-------cCCCCCeeEecHHHHHHHHh-cCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCce
Q 002357 146 --VGLMTGDVT-------LSPNASCLVMTTEILRGMLY-RGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIK 215 (931)
Q Consensus 146 --vg~~tGd~~-------~~~~~~IlV~Tpe~L~~~l~-~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q 215 (931)
+..+.|+.. +.+.++|+|+||++|++++. .+...+..++++|+||||+++|.+|+..++.++..+|...|
T Consensus 158 lr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erq 237 (476)
T KOG0330|consen 158 LRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQ 237 (476)
T ss_pred eEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccce
Confidence 455778775 34679999999999999997 44556889999999999999999999999999999999999
Q ss_pred EEEeccCCCChHHHHHHHHhhcCCCeEEEecCC-CCCc--ceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhc
Q 002357 216 MVFLSATMSNATQFAEWICHLHKQPCHVVYTDF-RPTP--LQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKI 292 (931)
Q Consensus 216 ~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~-rp~p--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 292 (931)
.+++|||++.... .........|..+..+.. +.++ .++|++ +..
T Consensus 238 t~LfsATMt~kv~--kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylf----------v~~--------------------- 284 (476)
T KOG0330|consen 238 TFLFSATMTKKVR--KLQRASLDNPVKVAVSSKYQTVDHLKQTYLF----------VPG--------------------- 284 (476)
T ss_pred EEEEEeecchhhH--HHHhhccCCCeEEeccchhcchHHhhhheEe----------ccc---------------------
Confidence 9999999986543 333445556666655432 2222 123332 111
Q ss_pred CCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHh
Q 002357 293 GGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVD 372 (931)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~ 372 (931)
..+-..|+..+.+..+.++||||++...++.++-.|..+|+.+
T Consensus 285 ---------------------k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a---------------- 327 (476)
T KOG0330|consen 285 ---------------------KDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQA---------------- 327 (476)
T ss_pred ---------------------cccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcce----------------
Confidence 1112234555555566899999999999999999999999875
Q ss_pred hcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCC
Q 002357 373 CLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSH 452 (931)
Q Consensus 373 ~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~ 452 (931)
-.+||.|++..|.-.++.|++|...||+|||+++||+|+|.+++|| +||.
T Consensus 328 -----------------------~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VV----NyDi--- 377 (476)
T KOG0330|consen 328 -----------------------IPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVV----NYDI--- 377 (476)
T ss_pred -----------------------ecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEE----ecCC---
Confidence 4689999999999999999999999999999999999999999999 8999
Q ss_pred cccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHh
Q 002357 453 RYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKD 493 (931)
Q Consensus 453 ~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~ 493 (931)
|.+..+|+||+||+||+|.. |.+|.+++.. |.+.+.+
T Consensus 378 -P~~skDYIHRvGRtaRaGrs--G~~ItlVtqy-Dve~~qr 414 (476)
T KOG0330|consen 378 -PTHSKDYIHRVGRTARAGRS--GKAITLVTQY-DVELVQR 414 (476)
T ss_pred -CCcHHHHHHHcccccccCCC--cceEEEEehh-hhHHHHH
Confidence 99999999999999999975 6666666653 5554444
No 11
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-46 Score=438.14 Aligned_cols=322 Identities=25% Similarity=0.363 Sum_probs=268.6
Q ss_pred cCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC--CC--E-EEEEcCchhhHHHHHHHHHHhcC-
Q 002357 72 TYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD--KQ--R-VIYTSPLKALSNQKYRELHQEFK- 144 (931)
Q Consensus 72 ~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~--~~--r-vl~l~P~kaL~~Q~~~~l~~~~~- 144 (931)
..+|+ |+|+|.++||.+..|+|+++.|+||||||++|.+|++..+.. .. . +||++|||+|+.|+++.+..+..
T Consensus 46 ~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~ 125 (513)
T COG0513 46 DLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKN 125 (513)
T ss_pred HcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhh
Confidence 37898 999999999999999999999999999999999999998862 21 2 89999999999999999988765
Q ss_pred ----CeEEEeccccc-------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCC
Q 002357 145 ----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPA 213 (931)
Q Consensus 145 ----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~ 213 (931)
.+..++|+.++ ..+++|+|+||+++.+++.++...+.++.++|+||||.|+|.+|...++.++..+|..
T Consensus 126 ~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~ 205 (513)
T COG0513 126 LGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPD 205 (513)
T ss_pred cCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcc
Confidence 35678898864 3359999999999999999998889999999999999999999999999999999999
Q ss_pred ceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCC----CCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHh
Q 002357 214 IKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFR----PTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLK 289 (931)
Q Consensus 214 ~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~r----p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 289 (931)
.|++++|||+|+ .+..|...+..+|..+...... +..+.++++ .++...
T Consensus 206 ~qtllfSAT~~~--~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~---------~v~~~~---------------- 258 (513)
T COG0513 206 RQTLLFSATMPD--DIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYL---------EVESEE---------------- 258 (513)
T ss_pred cEEEEEecCCCH--HHHHHHHHHccCCcEEEEccccccccccCceEEEE---------EeCCHH----------------
Confidence 999999999998 3678888888888766555221 222333332 222110
Q ss_pred hhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHH
Q 002357 290 QKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQN 369 (931)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~ 369 (931)
.+...+...+......++||||+++..|+.++..|...|+.
T Consensus 259 -------------------------~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~-------------- 299 (513)
T COG0513 259 -------------------------EKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFK-------------- 299 (513)
T ss_pred -------------------------HHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCe--------------
Confidence 12233444444445557999999999999999999988765
Q ss_pred HHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCC
Q 002357 370 AVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDG 449 (931)
Q Consensus 370 ~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~ 449 (931)
+..+||+|++.+|..+++.|++|.++||||||+++||||+|++++|| +||+
T Consensus 300 -------------------------~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vi----nyD~ 350 (513)
T COG0513 300 -------------------------VAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVI----NYDL 350 (513)
T ss_pred -------------------------EEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeE----EccC
Confidence 58999999999999999999999999999999999999999999999 9999
Q ss_pred CCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhh
Q 002357 450 DSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDM 494 (931)
Q Consensus 450 ~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l 494 (931)
|.+++.|+||+||+||+|.. |.++.++.+..+...+.++
T Consensus 351 ----p~~~e~yvHRiGRTgRaG~~--G~ai~fv~~~~e~~~l~~i 389 (513)
T COG0513 351 ----PLDPEDYVHRIGRTGRAGRK--GVAISFVTEEEEVKKLKRI 389 (513)
T ss_pred ----CCCHHHheeccCccccCCCC--CeEEEEeCcHHHHHHHHHH
Confidence 99999999999999999975 7777777664344444443
No 12
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=4.5e-46 Score=432.92 Aligned_cols=314 Identities=19% Similarity=0.305 Sum_probs=257.6
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC---CCEEEEEcCchhhHHHHHHHHHHhcC-
Q 002357 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYRELHQEFK- 144 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~---~~rvl~l~P~kaL~~Q~~~~l~~~~~- 144 (931)
...++|+ |+|+|.+|++.+.+|+|++++||||||||++|.+|++..+.. +.++||++||++|+.|++++++.+..
T Consensus 19 l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~ 98 (460)
T PRK11776 19 LNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARF 98 (460)
T ss_pred HHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 3457887 999999999999999999999999999999999999998854 34899999999999999999887642
Q ss_pred ----CeEEEeccccc-------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCC
Q 002357 145 ----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPA 213 (931)
Q Consensus 145 ----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~ 213 (931)
.+..++|+.+. ...++|+|+||++|.+++.++...++++++||+||||.|.+.++...+..++..+|..
T Consensus 99 ~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~ 178 (460)
T PRK11776 99 IPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPAR 178 (460)
T ss_pred CCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcc
Confidence 56778888764 3568999999999999998888889999999999999999999999999999999999
Q ss_pred ceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCC-CcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhc
Q 002357 214 IKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP-TPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKI 292 (931)
Q Consensus 214 ~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp-~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 292 (931)
.|++++|||+++.. ..+.......+..+....... ..+.++.+. ++..
T Consensus 179 ~q~ll~SAT~~~~~--~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~---------~~~~-------------------- 227 (460)
T PRK11776 179 RQTLLFSATYPEGI--AAISQRFQRDPVEVKVESTHDLPAIEQRFYE---------VSPD-------------------- 227 (460)
T ss_pred cEEEEEEecCcHHH--HHHHHHhcCCCEEEEECcCCCCCCeeEEEEE---------eCcH--------------------
Confidence 99999999998553 344555555565554433221 112322221 1111
Q ss_pred CCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHh
Q 002357 293 GGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVD 372 (931)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~ 372 (931)
.+...+...+......++||||++++.|+.++..|...++.
T Consensus 228 ----------------------~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~----------------- 268 (460)
T PRK11776 228 ----------------------ERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFS----------------- 268 (460)
T ss_pred ----------------------HHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCc-----------------
Confidence 11223444444455678999999999999999999876554
Q ss_pred hcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCC
Q 002357 373 CLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSH 452 (931)
Q Consensus 373 ~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~ 452 (931)
+..+||+|++.+|+.+++.|++|.++|||||+++++|||+|++++|| +||.
T Consensus 269 ----------------------v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI----~~d~--- 319 (460)
T PRK11776 269 ----------------------ALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVI----NYEL--- 319 (460)
T ss_pred ----------------------EEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEE----EecC---
Confidence 68899999999999999999999999999999999999999999999 7887
Q ss_pred cccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 453 RYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 453 ~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
|.++.+|+||+|||||.|.. |.++.++.+.
T Consensus 320 -p~~~~~yiqR~GRtGR~g~~--G~ai~l~~~~ 349 (460)
T PRK11776 320 -ARDPEVHVHRIGRTGRAGSK--GLALSLVAPE 349 (460)
T ss_pred -CCCHhHhhhhcccccCCCCc--ceEEEEEchh
Confidence 88999999999999999985 6677776654
No 13
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.9e-47 Score=375.84 Aligned_cols=328 Identities=20% Similarity=0.325 Sum_probs=270.5
Q ss_pred CCCCChhhhccccCCCCCchhhhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC---CCEEE
Q 002357 48 YALTKDEAIHGTFANPVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVI 123 (931)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~---~~rvl 123 (931)
.+.+.++++++.|. |||+ |+.+|++|++.+.+|+||+++|..|+|||..|.+.+++.+.- ...++
T Consensus 31 ~Mgl~edlLrgiY~-----------yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~l 99 (400)
T KOG0328|consen 31 DMGLKEDLLRGIYA-----------YGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQAL 99 (400)
T ss_pred hcCchHHHHHHHHH-----------hccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEE
Confidence 46677777887775 8998 999999999999999999999999999999998888887743 46799
Q ss_pred EEcCchhhHHHHHHHHHHhcC----CeEEEecccccC-------CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccc
Q 002357 124 YTSPLKALSNQKYRELHQEFK----DVGLMTGDVTLS-------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192 (931)
Q Consensus 124 ~l~P~kaL~~Q~~~~l~~~~~----~vg~~tGd~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH 192 (931)
+++|||+|+.|+.+.+..+.. .+..+.|+.++. .+.+++.+||+++.+|+.++....+.+.++|+||+|
T Consensus 100 ilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaD 179 (400)
T KOG0328|consen 100 ILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEAD 179 (400)
T ss_pred EecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHH
Confidence 999999999999999999877 344467777643 367899999999999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHhcCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCcc
Q 002357 193 YMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEK 272 (931)
Q Consensus 193 ~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~ 272 (931)
.|++.+++.....+...+|+..|++++|||+| .++.+....+..+|+.+...... .+++ +.+++|.-++ .
T Consensus 180 emL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp--~eilemt~kfmtdpvrilvkrde-ltlE------gIKqf~v~ve-~ 249 (400)
T KOG0328|consen 180 EMLNKGFKEQIYDIYRYLPPGAQVVLVSATLP--HEILEMTEKFMTDPVRILVKRDE-LTLE------GIKQFFVAVE-K 249 (400)
T ss_pred HHHHhhHHHHHHHHHHhCCCCceEEEEeccCc--HHHHHHHHHhcCCceeEEEecCC-Cchh------hhhhheeeec-h
Confidence 99999999999999999999999999999998 44556667777777777654322 1221 1122232222 2
Q ss_pred chhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccC
Q 002357 273 EQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKL 352 (931)
Q Consensus 273 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~ 352 (931)
+.|+-+. |++......-.+++|||+|++.++.+.+.+...
T Consensus 250 EewKfdt----------------------------------------LcdLYd~LtItQavIFcnTk~kVdwLtekm~~~ 289 (400)
T KOG0328|consen 250 EEWKFDT----------------------------------------LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA 289 (400)
T ss_pred hhhhHhH----------------------------------------HHHHhhhhehheEEEEecccchhhHHHHHHHhh
Confidence 2222222 222222234467999999999999999999886
Q ss_pred CCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhccc
Q 002357 353 DFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGL 432 (931)
Q Consensus 353 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GI 432 (931)
++. |...||+|.+++|+.+...|++|..+||++|++.++||
T Consensus 290 nft---------------------------------------VssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGi 330 (400)
T KOG0328|consen 290 NFT---------------------------------------VSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGI 330 (400)
T ss_pred Cce---------------------------------------eeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccC
Confidence 665 67899999999999999999999999999999999999
Q ss_pred CCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 433 NMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 433 dip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
|+|.+++|| +||. |.+.+.|+||+||.||.|+. |.+|-++...
T Consensus 331 Dv~qVslvi----NYDL----P~nre~YIHRIGRSGRFGRk--GvainFVk~~ 373 (400)
T KOG0328|consen 331 DVQQVSLVI----NYDL----PNNRELYIHRIGRSGRFGRK--GVAINFVKSD 373 (400)
T ss_pred CcceeEEEE----ecCC----CccHHHHhhhhccccccCCc--ceEEEEecHH
Confidence 999999999 8999 88999999999999999994 7777777654
No 14
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5.9e-46 Score=435.98 Aligned_cols=324 Identities=19% Similarity=0.222 Sum_probs=252.6
Q ss_pred CchhhhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh--------CCCEEEEEcCchhhHHHH
Q 002357 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR--------DKQRVIYTSPLKALSNQK 135 (931)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~--------~~~rvl~l~P~kaL~~Q~ 135 (931)
........++|+ |+|+|.++||.+++|+|++++||||||||++|++|++..+. .+..+||++||++|+.|+
T Consensus 140 ~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi 219 (545)
T PTZ00110 140 YILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQI 219 (545)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHH
Confidence 333444567897 99999999999999999999999999999999999877653 256899999999999999
Q ss_pred HHHHHHhcC----CeEEEeccccc-------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHH
Q 002357 136 YRELHQEFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWE 204 (931)
Q Consensus 136 ~~~l~~~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~ 204 (931)
++.+..+.. .+..++|+.+. ...++|+|+||++|.+++.++...++++++||+||||+|.++++...+.
T Consensus 220 ~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~ 299 (545)
T PTZ00110 220 REQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIR 299 (545)
T ss_pred HHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHH
Confidence 999998765 45566777643 3468999999999999998888889999999999999999999999999
Q ss_pred HHHHhcCCCceEEEeccCCCChH-HHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHH
Q 002357 205 ESIIFLPPAIKMVFLSATMSNAT-QFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKL 283 (931)
Q Consensus 205 ~ii~~l~~~~q~v~lSAT~~n~~-e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (931)
.++..+++..|++++|||++... .++.++.. ..++.+........... ...+....++...+
T Consensus 300 ~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~--~~~v~i~vg~~~l~~~~------~i~q~~~~~~~~~k--------- 362 (545)
T PTZ00110 300 KIVSQIRPDRQTLMWSATWPKEVQSLARDLCK--EEPVHVNVGSLDLTACH------NIKQEVFVVEEHEK--------- 362 (545)
T ss_pred HHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhc--cCCEEEEECCCccccCC------CeeEEEEEEechhH---------
Confidence 99999999999999999998654 34433321 23444433222111000 00111111111100
Q ss_pred HHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHH
Q 002357 284 QDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTV 363 (931)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i 363 (931)
...+..++..+.. ...++||||++++.|+.++..|...++.
T Consensus 363 ------------------------------~~~L~~ll~~~~~-~~~k~LIF~~t~~~a~~l~~~L~~~g~~-------- 403 (545)
T PTZ00110 363 ------------------------------RGKLKMLLQRIMR-DGDKILIFVETKKGADFLTKELRLDGWP-------- 403 (545)
T ss_pred ------------------------------HHHHHHHHHHhcc-cCCeEEEEecChHHHHHHHHHHHHcCCc--------
Confidence 0112223333222 4578999999999999999999766554
Q ss_pred HHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEec
Q 002357 364 EQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA 443 (931)
Q Consensus 364 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~ 443 (931)
+..+||++++.+|+.+++.|++|.++|||||+++++|||+|++++||
T Consensus 404 -------------------------------~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI-- 450 (545)
T PTZ00110 404 -------------------------------ALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVI-- 450 (545)
T ss_pred -------------------------------EEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEE--
Confidence 46899999999999999999999999999999999999999999999
Q ss_pred ceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 444 VKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 444 ~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
+||. |.+..+|+||+|||||.|.. |.+++++++.
T Consensus 451 --~~d~----P~s~~~yvqRiGRtGR~G~~--G~ai~~~~~~ 484 (545)
T PTZ00110 451 --NFDF----PNQIEDYVHRIGRTGRAGAK--GASYTFLTPD 484 (545)
T ss_pred --EeCC----CCCHHHHHHHhcccccCCCC--ceEEEEECcc
Confidence 7888 89999999999999999985 6777777654
No 15
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-46 Score=397.21 Aligned_cols=327 Identities=19% Similarity=0.256 Sum_probs=268.9
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh------CCCEEEEEcCchhhHHHHHHHHHHh
Q 002357 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR------DKQRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~------~~~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
...+||. |+|+|..+||..+-|++++.+|.||||||.+|.+|++..+- ...||||++|||+|+-|++...+++
T Consensus 196 ~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~ql 275 (691)
T KOG0338|consen 196 CSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQL 275 (691)
T ss_pred HHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHH
Confidence 3467998 99999999999999999999999999999999999998872 2469999999999999999888776
Q ss_pred cC----CeEEEecccccC-------CCCCeeEecHHHHHHHHhcC-ccccCcccEEEEeccccCCCCCchHHHHHHHHhc
Q 002357 143 FK----DVGLMTGDVTLS-------PNASCLVMTTEILRGMLYRG-SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL 210 (931)
Q Consensus 143 ~~----~vg~~tGd~~~~-------~~~~IlV~Tpe~L~~~l~~~-~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l 210 (931)
.. .+|+..||.++. ..++|+|+||++|.+++.+. +..++++..+|+||||+|++.+|...+.+++.+|
T Consensus 276 aqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lc 355 (691)
T KOG0338|consen 276 AQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLC 355 (691)
T ss_pred HhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhc
Confidence 44 789999998753 47999999999999999665 4568999999999999999999999999999999
Q ss_pred CCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcce---eeeeccCCCceeEeeCccchhchhhHHHHHHHH
Q 002357 211 PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQ---HYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTF 287 (931)
Q Consensus 211 ~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 287 (931)
|++.|.++||||+... +.+.+....+.|+.++..+...++.. .|+-.. ..
T Consensus 356 pk~RQTmLFSATMtee--VkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR---------~~---------------- 408 (691)
T KOG0338|consen 356 PKNRQTMLFSATMTEE--VKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIR---------PK---------------- 408 (691)
T ss_pred cccccceeehhhhHHH--HHHHHHhhcCCCeEEEeCCccccchhhhHHHheec---------cc----------------
Confidence 9999999999999744 44777777788998888765544321 111000 00
Q ss_pred HhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHH
Q 002357 288 LKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVF 367 (931)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~ 367 (931)
.......-+..++. ......+|||+.|++.|..+.-.|.-+|+.
T Consensus 409 ---------------------re~dRea~l~~l~~---rtf~~~~ivFv~tKk~AHRl~IllGLlgl~------------ 452 (691)
T KOG0338|consen 409 ---------------------REGDREAMLASLIT---RTFQDRTIVFVRTKKQAHRLRILLGLLGLK------------ 452 (691)
T ss_pred ---------------------cccccHHHHHHHHH---HhcccceEEEEehHHHHHHHHHHHHHhhch------------
Confidence 00011122223333 334467999999999999998887665554
Q ss_pred HHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceec
Q 002357 368 QNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKW 447 (931)
Q Consensus 368 ~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~ 447 (931)
++-+||.|++.+|-..++.|++++++||||||++++|+|++.+.+|| +|
T Consensus 453 ---------------------------agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVI----Ny 501 (691)
T KOG0338|consen 453 ---------------------------AGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVI----NY 501 (691)
T ss_pred ---------------------------hhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEE----ec
Confidence 57789999999999999999999999999999999999999999999 88
Q ss_pred CCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhhc
Q 002357 448 DGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLE 497 (931)
Q Consensus 448 d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~~ 497 (931)
+. |.+...|+||+||+.|+|+. |.+|.++.+. +...++.++..
T Consensus 502 ~m----P~t~e~Y~HRVGRTARAGRa--GrsVtlvgE~-dRkllK~iik~ 544 (691)
T KOG0338|consen 502 AM----PKTIEHYLHRVGRTARAGRA--GRSVTLVGES-DRKLLKEIIKS 544 (691)
T ss_pred cC----chhHHHHHHHhhhhhhcccC--cceEEEeccc-cHHHHHHHHhh
Confidence 88 99999999999999999995 6777777766 66777777665
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.3e-45 Score=427.12 Aligned_cols=312 Identities=20% Similarity=0.245 Sum_probs=246.8
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC---------CCEEEEEcCchhhHHHHHHHH
Q 002357 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---------KQRVIYTSPLKALSNQKYREL 139 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~---------~~rvl~l~P~kaL~~Q~~~~l 139 (931)
...++|. |+|+|.++|+.+.+|+|++++||||||||++|++|++..+.. ..++||++||++|+.|+++.+
T Consensus 16 l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~ 95 (456)
T PRK10590 16 VAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENV 95 (456)
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHH
Confidence 3456887 999999999999999999999999999999999999988742 237999999999999999999
Q ss_pred HHhcC----CeEEEeccccc-------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHH
Q 002357 140 HQEFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII 208 (931)
Q Consensus 140 ~~~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~ 208 (931)
..++. .+..++|+.+. ...++|+|+||++|.+++......++++++||+||||++.++++...+..++.
T Consensus 96 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~ 175 (456)
T PRK10590 96 RDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLA 175 (456)
T ss_pred HHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHH
Confidence 98765 44567787764 34689999999999999988877899999999999999999999889999999
Q ss_pred hcCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCC--CCcceeeeeccCCCceeEeeCccchhchhhHHHHHHH
Q 002357 209 FLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFR--PTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDT 286 (931)
Q Consensus 209 ~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (931)
.++...|++++|||+++... .+.......+..+...... ...+.+++ ..++..
T Consensus 176 ~l~~~~q~l~~SAT~~~~~~--~l~~~~~~~~~~i~~~~~~~~~~~i~~~~---------~~~~~~-------------- 230 (456)
T PRK10590 176 KLPAKRQNLLFSATFSDDIK--ALAEKLLHNPLEIEVARRNTASEQVTQHV---------HFVDKK-------------- 230 (456)
T ss_pred hCCccCeEEEEeCCCcHHHH--HHHHHHcCCCeEEEEecccccccceeEEE---------EEcCHH--------------
Confidence 99999999999999986532 3333333444444332211 11111111 111110
Q ss_pred HHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHH
Q 002357 287 FLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQV 366 (931)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~ 366 (931)
.+...+...+......++||||+++..|+.++..|...++.
T Consensus 231 ----------------------------~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~----------- 271 (456)
T PRK10590 231 ----------------------------RKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIR----------- 271 (456)
T ss_pred ----------------------------HHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCC-----------
Confidence 00111222223335578999999999999999999876654
Q ss_pred HHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEeccee
Q 002357 367 FQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKK 446 (931)
Q Consensus 367 ~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~ 446 (931)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++|| +
T Consensus 272 ----------------------------~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI----~ 319 (456)
T PRK10590 272 ----------------------------SAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVV----N 319 (456)
T ss_pred ----------------------------EEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEE----E
Confidence 57899999999999999999999999999999999999999999999 7
Q ss_pred cCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEE
Q 002357 447 WDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIM 481 (931)
Q Consensus 447 ~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~ 481 (931)
||. |.++.+|+||+|||||.|..+.+++++.
T Consensus 320 ~~~----P~~~~~yvqR~GRaGR~g~~G~ai~l~~ 350 (456)
T PRK10590 320 YEL----PNVPEDYVHRIGRTGRAAATGEALSLVC 350 (456)
T ss_pred eCC----CCCHHHhhhhccccccCCCCeeEEEEec
Confidence 888 8999999999999999998644444443
No 17
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.7e-46 Score=425.85 Aligned_cols=313 Identities=22% Similarity=0.232 Sum_probs=249.2
Q ss_pred ccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh----------CCCEEEEEcCchhhHHHHHHHH
Q 002357 71 KTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR----------DKQRVIYTSPLKALSNQKYREL 139 (931)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~----------~~~rvl~l~P~kaL~~Q~~~~l 139 (931)
..++|+ |+|+|.+||+.+.+|+|++++||||||||++|++|++..+. .+.++||++||++|+.|+++.+
T Consensus 24 ~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~ 103 (423)
T PRK04837 24 EKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADA 103 (423)
T ss_pred HHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHH
Confidence 457887 99999999999999999999999999999999999987763 2468999999999999999988
Q ss_pred HHhcC----CeEEEecccc-------cCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHH
Q 002357 140 HQEFK----DVGLMTGDVT-------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII 208 (931)
Q Consensus 140 ~~~~~----~vg~~tGd~~-------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~ 208 (931)
..+.. .++.++|+.+ +..+++|+|+||++|.+++.++...++++++||+||||++.+.++...+..++.
T Consensus 104 ~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~ 183 (423)
T PRK04837 104 EPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFR 183 (423)
T ss_pred HHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHHH
Confidence 87754 5677888764 244689999999999999988878899999999999999999999999988888
Q ss_pred hcCC--CceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCC--cceeeeeccCCCceeEeeCccchhchhhHHHHH
Q 002357 209 FLPP--AIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPT--PLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQ 284 (931)
Q Consensus 209 ~l~~--~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~--pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (931)
.++. ..+.+++|||++.... .........+..+........ .+.+..+ ....
T Consensus 184 ~~~~~~~~~~~l~SAT~~~~~~--~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~---------~~~~------------- 239 (423)
T PRK04837 184 RMPPANQRLNMLFSATLSYRVR--ELAFEHMNNPEYVEVEPEQKTGHRIKEELF---------YPSN------------- 239 (423)
T ss_pred hCCCccceeEEEEeccCCHHHH--HHHHHHCCCCEEEEEcCCCcCCCceeEEEE---------eCCH-------------
Confidence 8874 5678999999986543 333333344544443322111 1111111 0000
Q ss_pred HHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHH
Q 002357 285 DTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVE 364 (931)
Q Consensus 285 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~ 364 (931)
..+...+...+......++||||+++..|+.++..|...++.
T Consensus 240 -----------------------------~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~--------- 281 (423)
T PRK04837 240 -----------------------------EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHR--------- 281 (423)
T ss_pred -----------------------------HHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCc---------
Confidence 011122333344445678999999999999999999876654
Q ss_pred HHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecc
Q 002357 365 QVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAV 444 (931)
Q Consensus 365 ~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~ 444 (931)
+.++||+|++.+|..+++.|++|+++|||||+++++|||+|++++||
T Consensus 282 ------------------------------v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI--- 328 (423)
T PRK04837 282 ------------------------------VGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVF--- 328 (423)
T ss_pred ------------------------------EEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEE---
Confidence 68999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 445 KKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 445 ~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
+||. |.++.+|+||+|||||.|.. |.++.+..+.
T Consensus 329 -~~d~----P~s~~~yiqR~GR~gR~G~~--G~ai~~~~~~ 362 (423)
T PRK04837 329 -NYDL----PDDCEDYVHRIGRTGRAGAS--GHSISLACEE 362 (423)
T ss_pred -EeCC----CCchhheEeccccccCCCCC--eeEEEEeCHH
Confidence 8888 89999999999999999985 6677776654
No 18
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.5e-45 Score=420.49 Aligned_cols=375 Identities=28% Similarity=0.426 Sum_probs=299.3
Q ss_pred ccCCCC-CCHHHHHHHHHH-hcCCcEEEEcCCCCCcHHHHHHHHHHHHh----------CCCEEEEEcCchhhHHHHHHH
Q 002357 71 KTYSFE-LDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMAFR----------DKQRVIYTSPLKALSNQKYRE 138 (931)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l-~~g~~vlv~apTGsGKTl~~~l~i~~~l~----------~~~rvl~l~P~kaL~~Q~~~~ 138 (931)
..|+|+ ++.+|..++|.+ ..+.|.+|+||||||||.+|+++|++.++ ++.+++|++|.||||.++++.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 457887 999999999876 78899999999999999999999999986 467999999999999999999
Q ss_pred HHHhcC----CeEEEecccccCC----CCCeeEecHHHHHHHHhcC---ccccCcccEEEEeccccCCCCCchHHHHHHH
Q 002357 139 LHQEFK----DVGLMTGDVTLSP----NASCLVMTTEILRGMLYRG---SEVLKEVAWVIFDEIHYMKDRERGVVWEESI 207 (931)
Q Consensus 139 l~~~~~----~vg~~tGd~~~~~----~~~IlV~Tpe~L~~~l~~~---~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii 207 (931)
|.+.+. .|+-+|||.+... .++|+|+|||.+--.-.+. ...+..+++||+||+|.+.| +||+++|.++
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlEtiV 262 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLETIV 262 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHHHHH
Confidence 999887 5777999998754 6899999999874222211 23577899999999998876 6999999887
Q ss_pred Hhc-------CCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhH
Q 002357 208 IFL-------PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNF 280 (931)
Q Consensus 208 ~~l-------~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (931)
.+. ...+++|+||||+||..+++.|++.........+...+||+|+...++..... +..+...++
T Consensus 263 aRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~--------~~~~~~~~~ 334 (1230)
T KOG0952|consen 263 ARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGK--------KNRQQKKNI 334 (1230)
T ss_pred HHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecc--------cchhhhhhH
Confidence 653 35789999999999999999999987666778888899999998665432211 101111111
Q ss_pred HHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHH
Q 002357 281 VKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEK 360 (931)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~ 360 (931)
. .....++++.+. ++.+++|||.+|+.+-..|+.|.+....
T Consensus 335 d--------------------------------~~~~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~----- 375 (1230)
T KOG0952|consen 335 D--------------------------------EVCYDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAET----- 375 (1230)
T ss_pred H--------------------------------HHHHHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHh-----
Confidence 1 112233444443 5679999999999999999998653221
Q ss_pred HHHHHHHHHHHhhcCcccCCCh--hHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcE
Q 002357 361 DTVEQVFQNAVDCLNEEDRNLP--AIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKT 438 (931)
Q Consensus 361 ~~i~~~~~~~~~~l~~~d~~l~--~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~ 438 (931)
....+..+| ..+.+.++..+|+++||+||...+|..++..|..|.++||+||.|+|+|+|+|+-.
T Consensus 376 -------------~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~a 442 (1230)
T KOG0952|consen 376 -------------NGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYA 442 (1230)
T ss_pred -------------cCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceE
Confidence 111222222 33678899999999999999999999999999999999999999999999999999
Q ss_pred EEEecceecCCCC--CcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhhccCCChHHHHHhhHHH
Q 002357 439 VVFTAVKKWDGDS--HRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLEGQFTAEHVIKNSFHQ 512 (931)
Q Consensus 439 vVI~~~~~~d~~~--~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~~~~~~~e~~l~~sf~~ 512 (931)
|||.+..-||... +..++.-+.+|+.|||||.+.+..|..+++.+.. ..+....++.|. ..+++.|..
T Consensus 443 ViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~d-kl~~Y~sLl~~~-----~piES~~~~ 512 (1230)
T KOG0952|consen 443 VIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRD-KLDHYESLLTGQ-----NPIESQLLP 512 (1230)
T ss_pred EEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEeccc-HHHHHHHHHcCC-----ChhHHHHHH
Confidence 9999999999976 6677888999999999999999999999988755 556677788776 234555544
No 19
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.5e-44 Score=427.24 Aligned_cols=322 Identities=21% Similarity=0.294 Sum_probs=258.4
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh---CCCEEEEEcCchhhHHHHHHHHHHhcC-
Q 002357 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEFK- 144 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~---~~~rvl~l~P~kaL~~Q~~~~l~~~~~- 144 (931)
...++|+ |+|+|.++|+.+..|++++++||||||||++|.+|++..+. .+.++||++||++|+.|+++.+..+..
T Consensus 21 l~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~ 100 (629)
T PRK11634 21 LNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKH 100 (629)
T ss_pred HHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhh
Confidence 3457887 99999999999999999999999999999999999988774 346899999999999999998877643
Q ss_pred ----CeEEEeccccc-------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCC
Q 002357 145 ----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPA 213 (931)
Q Consensus 145 ----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~ 213 (931)
.+..++|+.+. ...++|+|+||+++.+++.++...++++++||+||||.|+++++...++.++..+|..
T Consensus 101 ~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~ 180 (629)
T PRK11634 101 MRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 (629)
T ss_pred cCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCC
Confidence 45667777653 3568999999999999999888889999999999999999999999999999999999
Q ss_pred ceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCC-Cc-ceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhh
Q 002357 214 IKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP-TP-LQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQK 291 (931)
Q Consensus 214 ~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp-~p-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 291 (931)
.|++++|||+|+... .....+...+..+....... .+ +.+ .+..+..
T Consensus 181 ~q~llfSAT~p~~i~--~i~~~~l~~~~~i~i~~~~~~~~~i~q---------~~~~v~~-------------------- 229 (629)
T PRK11634 181 HQTALFSATMPEAIR--RITRRFMKEPQEVRIQSSVTTRPDISQ---------SYWTVWG-------------------- 229 (629)
T ss_pred CeEEEEEccCChhHH--HHHHHHcCCCeEEEccCccccCCceEE---------EEEEech--------------------
Confidence 999999999987643 33344444454443322111 11 111 1111111
Q ss_pred cCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHH
Q 002357 292 IGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAV 371 (931)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~ 371 (931)
..+...+.+.+......++||||+|+..|+.++..|...++.
T Consensus 230 ----------------------~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~---------------- 271 (629)
T PRK11634 230 ----------------------MRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYN---------------- 271 (629)
T ss_pred ----------------------hhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCC----------------
Confidence 112234555555556678999999999999999999887664
Q ss_pred hhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCC
Q 002357 372 DCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDS 451 (931)
Q Consensus 372 ~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~ 451 (931)
+..+||+|++.+|+.+++.|++|+++|||||+++++|||+|++++|| +||.
T Consensus 272 -----------------------~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI----~~d~-- 322 (629)
T PRK11634 272 -----------------------SAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVV----NYDI-- 322 (629)
T ss_pred -----------------------EEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEE----EeCC--
Confidence 57899999999999999999999999999999999999999999999 7888
Q ss_pred CcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhh
Q 002357 452 HRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDM 494 (931)
Q Consensus 452 ~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l 494 (931)
|.++.+|+||+|||||.|.. |.+++++++. +...++.+
T Consensus 323 --P~~~e~yvqRiGRtGRaGr~--G~ai~~v~~~-e~~~l~~i 360 (629)
T PRK11634 323 --PMDSESYVHRIGRTGRAGRA--GRALLFVENR-ERRLLRNI 360 (629)
T ss_pred --CCCHHHHHHHhccccCCCCc--ceEEEEechH-HHHHHHHH
Confidence 89999999999999999985 6777777654 33444443
No 20
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=9.1e-45 Score=419.40 Aligned_cols=313 Identities=21% Similarity=0.250 Sum_probs=249.8
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC-------CCEEEEEcCchhhHHHHHHHHHH
Q 002357 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD-------KQRVIYTSPLKALSNQKYRELHQ 141 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~-------~~rvl~l~P~kaL~~Q~~~~l~~ 141 (931)
....+|. |+++|.++++.+.+|+|++++||||+|||++|++|++..+.. +.++||++||++|+.|+++.+..
T Consensus 16 l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~ 95 (434)
T PRK11192 16 LQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARE 95 (434)
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHH
Confidence 3457887 999999999999999999999999999999999999987632 36899999999999999998887
Q ss_pred hcC----CeEEEeccccc-------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc
Q 002357 142 EFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL 210 (931)
Q Consensus 142 ~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l 210 (931)
+.. +++.++|+... ..+++|+|+||++|.+++..+...++++++|||||||+|.+++++..+..+...+
T Consensus 96 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~ 175 (434)
T PRK11192 96 LAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAET 175 (434)
T ss_pred HHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhC
Confidence 754 67888998753 4468999999999999998877778999999999999999999999999999999
Q ss_pred CCCceEEEeccCCCCh--HHHHHHHHhhcCCCeEEEecCCCCC--cceeeeeccCCCceeEeeCccchhchhhHHHHHHH
Q 002357 211 PPAIKMVFLSATMSNA--TQFAEWICHLHKQPCHVVYTDFRPT--PLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDT 286 (931)
Q Consensus 211 ~~~~q~v~lSAT~~n~--~e~~~~l~~~~~~~~~v~~~~~rp~--pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (931)
+...|++++|||++.. .++..++ ...+..+.....+.. .+.++. ...+..
T Consensus 176 ~~~~q~~~~SAT~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~i~~~~---------~~~~~~-------------- 229 (434)
T PRK11192 176 RWRKQTLLFSATLEGDAVQDFAERL---LNDPVEVEAEPSRRERKKIHQWY---------YRADDL-------------- 229 (434)
T ss_pred ccccEEEEEEeecCHHHHHHHHHHH---ccCCEEEEecCCcccccCceEEE---------EEeCCH--------------
Confidence 9899999999999743 2444444 344544433222111 111111 111100
Q ss_pred HHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHH
Q 002357 287 FLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQV 366 (931)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~ 366 (931)
..+...+...+......++||||+++..|+.++..|...++.
T Consensus 230 ---------------------------~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~----------- 271 (434)
T PRK11192 230 ---------------------------EHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGIN----------- 271 (434)
T ss_pred ---------------------------HHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCC-----------
Confidence 001112222333335678999999999999999999875543
Q ss_pred HHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEeccee
Q 002357 367 FQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKK 446 (931)
Q Consensus 367 ~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~ 446 (931)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++|| +
T Consensus 272 ----------------------------~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI----~ 319 (434)
T PRK11192 272 ----------------------------CCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVI----N 319 (434)
T ss_pred ----------------------------EEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEE----E
Confidence 58899999999999999999999999999999999999999999999 7
Q ss_pred cCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCC
Q 002357 447 WDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDE 484 (931)
Q Consensus 447 ~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~ 484 (931)
||. |.+...|+||+|||||.|.. |.++++++.
T Consensus 320 ~d~----p~s~~~yiqr~GR~gR~g~~--g~ai~l~~~ 351 (434)
T PRK11192 320 FDM----PRSADTYLHRIGRTGRAGRK--GTAISLVEA 351 (434)
T ss_pred ECC----CCCHHHHhhcccccccCCCC--ceEEEEecH
Confidence 888 89999999999999999986 555555543
No 21
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=9e-45 Score=425.00 Aligned_cols=311 Identities=23% Similarity=0.259 Sum_probs=242.4
Q ss_pred ccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh----------CCCEEEEEcCchhhHHHHHHHH
Q 002357 71 KTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR----------DKQRVIYTSPLKALSNQKYREL 139 (931)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~----------~~~rvl~l~P~kaL~~Q~~~~l 139 (931)
...+|+ |+|+|.+||+.+..|+|++++||||||||++|++|++..+. .+.++||++||++|+.|+++.+
T Consensus 137 ~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~ 216 (518)
T PLN00206 137 ETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQA 216 (518)
T ss_pred HHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHH
Confidence 456887 99999999999999999999999999999999999987652 4578999999999999999988
Q ss_pred HHhcC----CeEEEecccc-------cCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHH
Q 002357 140 HQEFK----DVGLMTGDVT-------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII 208 (931)
Q Consensus 140 ~~~~~----~vg~~tGd~~-------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~ 208 (931)
+.+.. .+..+.|+.. +..+++|+|+||++|.+++.++...++++++||+||||+|.+++|...+..++.
T Consensus 217 ~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~ 296 (518)
T PLN00206 217 KVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQ 296 (518)
T ss_pred HHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHH
Confidence 87755 3334455443 345689999999999999988888899999999999999999998888888887
Q ss_pred hcCCCceEEEeccCCCChHH-HHHHHHhhcCCCeEEEecC-CCCCc-ceeeeeccCCCceeEeeCccchhchhhHHHHHH
Q 002357 209 FLPPAIKMVFLSATMSNATQ-FAEWICHLHKQPCHVVYTD-FRPTP-LQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQD 285 (931)
Q Consensus 209 ~l~~~~q~v~lSAT~~n~~e-~~~~l~~~~~~~~~v~~~~-~rp~p-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (931)
.++ ..|++++|||+++..+ ++.++ ...+..+.... .++.. +.++ ...+...
T Consensus 297 ~l~-~~q~l~~SATl~~~v~~l~~~~---~~~~~~i~~~~~~~~~~~v~q~---------~~~~~~~------------- 350 (518)
T PLN00206 297 ALS-QPQVLLFSATVSPEVEKFASSL---AKDIILISIGNPNRPNKAVKQL---------AIWVETK------------- 350 (518)
T ss_pred hCC-CCcEEEEEeeCCHHHHHHHHHh---CCCCEEEEeCCCCCCCcceeEE---------EEeccch-------------
Confidence 775 6799999999987653 44433 33344433322 11111 1111 1111111
Q ss_pred HHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHc--CCCcEEEEecCHHHHHHHHHHhcc-CCCCChHHHHH
Q 002357 286 TFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMER--KFQPVIVFSFSRRECEQHAMSMSK-LDFNTQEEKDT 362 (931)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~~~~~IVF~~sr~~~~~la~~L~~-~~~~~~~e~~~ 362 (931)
.+...+...+... ...++||||+++..|+.++..|.. .++.
T Consensus 351 -----------------------------~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~------- 394 (518)
T PLN00206 351 -----------------------------QKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLK------- 394 (518)
T ss_pred -----------------------------hHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcc-------
Confidence 0111223333221 235899999999999999998864 2332
Q ss_pred HHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEe
Q 002357 363 VEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFT 442 (931)
Q Consensus 363 i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~ 442 (931)
+..+||++++.+|..+++.|++|.++|||||+++++|||+|++++||
T Consensus 395 --------------------------------~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI- 441 (518)
T PLN00206 395 --------------------------------ALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVI- 441 (518)
T ss_pred --------------------------------eEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEE-
Confidence 57899999999999999999999999999999999999999999999
Q ss_pred cceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 443 AVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 443 ~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
+||. |.+..+|+||+|||||.|.. |.+++++++.
T Consensus 442 ---~~d~----P~s~~~yihRiGRaGR~g~~--G~ai~f~~~~ 475 (518)
T PLN00206 442 ---IFDM----PNTIKEYIHQIGRASRMGEK--GTAIVFVNEE 475 (518)
T ss_pred ---EeCC----CCCHHHHHHhccccccCCCC--eEEEEEEchh
Confidence 8888 99999999999999999975 6777777654
No 22
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.9e-45 Score=395.40 Aligned_cols=330 Identities=31% Similarity=0.476 Sum_probs=267.1
Q ss_pred CCCchhhhccCCCC-CCHHHHHHHHH-HhcCCcEEEEcCCCCCcHHHHHHHH-HHHHhCCCEEEEEcCchhhHHHHHHHH
Q 002357 63 PVYNGEMAKTYSFE-LDPFQRVSVAC-LERNESVLVSAHTSAGKTAVAEYAI-AMAFRDKQRVIYTSPLKALSNQKYREL 139 (931)
Q Consensus 63 ~~~~~~~~~~~~f~-l~~~Q~~ai~~-l~~g~~vlv~apTGsGKTl~~~l~i-~~~l~~~~rvl~l~P~kaL~~Q~~~~l 139 (931)
|.....+.+..|++ |.|+|.-|+.+ ++.|+|.+|..+|+||||+++++|- -..+..|++.||++|..||+||+|++|
T Consensus 202 pe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF 281 (830)
T COG1202 202 PEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDF 281 (830)
T ss_pred cHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHH
Confidence 33445666677887 99999999987 6999999999999999999999984 455677999999999999999999999
Q ss_pred HHhcCCeEE----Eecc-----------cccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHH
Q 002357 140 HQEFKDVGL----MTGD-----------VTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWE 204 (931)
Q Consensus 140 ~~~~~~vg~----~tGd-----------~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~ 204 (931)
+..+...|+ -.|- ....+++||+|+|+|-+..+|..+ ..+.+++.|||||+|.+.|.+||+.+.
T Consensus 282 ~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RLd 360 (830)
T COG1202 282 KERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRLD 360 (830)
T ss_pred HHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccchhcccchh
Confidence 999874443 2232 223457999999999998888776 668999999999999999999999999
Q ss_pred HHHHhc---CCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcce-eeeeccCCCceeEeeCccchhchhhH
Q 002357 205 ESIIFL---PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQ-HYVFPVGGSGLYLVVDEKEQFREDNF 280 (931)
Q Consensus 205 ~ii~~l---~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (931)
-+|..+ -+..|+|+||||+.|+.+++..++. ..+..+.||+|++ |.++..+. ..++
T Consensus 361 GLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~a------~lV~y~~RPVplErHlvf~~~e---------~eK~----- 420 (830)
T COG1202 361 GLIGRLRYLFPGAQFIYLSATVGNPEELAKKLGA------KLVLYDERPVPLERHLVFARNE---------SEKW----- 420 (830)
T ss_pred hHHHHHHHhCCCCeEEEEEeecCChHHHHHHhCC------eeEeecCCCCChhHeeeeecCc---------hHHH-----
Confidence 887654 4689999999999999999998864 5677789999997 44443221 1111
Q ss_pred HHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHH
Q 002357 281 VKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEK 360 (931)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~ 360 (931)
..+..+.+..... .-...-.+++|||++||+.|..+|..|...|+.+
T Consensus 421 -~ii~~L~k~E~~~----------------------------~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a---- 467 (830)
T COG1202 421 -DIIARLVKREFST----------------------------ESSKGYRGQTIVFTYSRRRCHELADALTGKGLKA---- 467 (830)
T ss_pred -HHHHHHHHHHHhh----------------------------hhccCcCCceEEEecchhhHHHHHHHhhcCCccc----
Confidence 1111111100000 0000134689999999999999999999888874
Q ss_pred HHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEE
Q 002357 361 DTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440 (931)
Q Consensus 361 ~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vV 440 (931)
..+|+||+..+|..++..|.++.+.++|+|.+++.|+|+|+-.||
T Consensus 468 -----------------------------------~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVI 512 (830)
T COG1202 468 -----------------------------------APYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVI 512 (830)
T ss_pred -----------------------------------ccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHH
Confidence 789999999999999999999999999999999999999999999
Q ss_pred EecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 441 FTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 441 I~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
|.+.. .+..|+++.+|.||.|||||.+-...|.+++++.+.
T Consensus 513 FEsLa----MG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 513 FESLA----MGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHHHH----cccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 96654 455699999999999999999999999999999775
No 23
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9e-45 Score=427.24 Aligned_cols=314 Identities=18% Similarity=0.224 Sum_probs=250.1
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC----------CCEEEEEcCchhhHHHHHHH
Q 002357 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD----------KQRVIYTSPLKALSNQKYRE 138 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~----------~~rvl~l~P~kaL~~Q~~~~ 138 (931)
...++|+ |+|+|.++|+.+.+|+|++++||||||||++|+++++..+.. +.++||++||++|++|+++.
T Consensus 24 L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~ 103 (572)
T PRK04537 24 LESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKD 103 (572)
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHH
Confidence 3457887 999999999999999999999999999999999999887631 36899999999999999999
Q ss_pred HHHhcC----CeEEEeccccc-------CCCCCeeEecHHHHHHHHhcC-ccccCcccEEEEeccccCCCCCchHHHHHH
Q 002357 139 LHQEFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRG-SEVLKEVAWVIFDEIHYMKDRERGVVWEES 206 (931)
Q Consensus 139 l~~~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~-~~~l~~l~~vViDEaH~l~~~~~g~~~~~i 206 (931)
+..++. .++.++|+.+. ...++|+|+||++|.+++.+. ...+..+++|||||||+|.+.++...++.+
T Consensus 104 ~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~i 183 (572)
T PRK04537 104 AVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFL 183 (572)
T ss_pred HHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHH
Confidence 988865 46778888753 346899999999999988765 345788999999999999999999999999
Q ss_pred HHhcCC--CceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCC--CcceeeeeccCCCceeEeeCccchhchhhHHH
Q 002357 207 IIFLPP--AIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP--TPLQHYVFPVGGSGLYLVVDEKEQFREDNFVK 282 (931)
Q Consensus 207 i~~l~~--~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp--~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (931)
+..++. ..|++++|||+++.. ..........+..+....... ..+.+.++ ....
T Consensus 184 l~~lp~~~~~q~ll~SATl~~~v--~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~---------~~~~----------- 241 (572)
T PRK04537 184 LRRMPERGTRQTLLFSATLSHRV--LELAYEHMNEPEKLVVETETITAARVRQRIY---------FPAD----------- 241 (572)
T ss_pred HHhcccccCceEEEEeCCccHHH--HHHHHHHhcCCcEEEeccccccccceeEEEE---------ecCH-----------
Confidence 988886 689999999998643 233333334444443322211 11122111 1000
Q ss_pred HHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHH
Q 002357 283 LQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDT 362 (931)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~ 362 (931)
..++..++..+......++||||+|+..|+.++..|...++.
T Consensus 242 -------------------------------~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~------- 283 (572)
T PRK04537 242 -------------------------------EEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYR------- 283 (572)
T ss_pred -------------------------------HHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCC-------
Confidence 111223444444456678999999999999999999876554
Q ss_pred HHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEe
Q 002357 363 VEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFT 442 (931)
Q Consensus 363 i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~ 442 (931)
+.++||+|++.+|+.+++.|++|.++|||||+++++|||+|++++||
T Consensus 284 --------------------------------v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VI- 330 (572)
T PRK04537 284 --------------------------------VGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVY- 330 (572)
T ss_pred --------------------------------EEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEE-
Confidence 68999999999999999999999999999999999999999999999
Q ss_pred cceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 443 AVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 443 ~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
+||. |.++.+|+||+|||||.|.. |.+++++.+.
T Consensus 331 ---nyd~----P~s~~~yvqRiGRaGR~G~~--G~ai~~~~~~ 364 (572)
T PRK04537 331 ---NYDL----PFDAEDYVHRIGRTARLGEE--GDAISFACER 364 (572)
T ss_pred ---EcCC----CCCHHHHhhhhcccccCCCC--ceEEEEecHH
Confidence 7887 89999999999999999986 5666666543
No 24
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-44 Score=382.96 Aligned_cols=322 Identities=23% Similarity=0.287 Sum_probs=263.4
Q ss_pred CchhhhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh-C-----C--CEEEEEcCchhhHHHH
Q 002357 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-D-----K--QRVIYTSPLKALSNQK 135 (931)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~-~-----~--~rvl~l~P~kaL~~Q~ 135 (931)
.........||+ +||+|..+||.+.+++||+|.|+||||||++|++|++..+. + . .-+||++|||+|+.|+
T Consensus 16 ~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI 95 (567)
T KOG0345|consen 16 WLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQI 95 (567)
T ss_pred HHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHH
Confidence 334455678998 99999999999999999999999999999999999999882 1 1 2689999999999999
Q ss_pred HHHHHHhcC-----CeEEEecccccC--------CCCCeeEecHHHHHHHHhcCccccC--cccEEEEeccccCCCCCch
Q 002357 136 YRELHQEFK-----DVGLMTGDVTLS--------PNASCLVMTTEILRGMLYRGSEVLK--EVAWVIFDEIHYMKDRERG 200 (931)
Q Consensus 136 ~~~l~~~~~-----~vg~~tGd~~~~--------~~~~IlV~Tpe~L~~~l~~~~~~l~--~l~~vViDEaH~l~~~~~g 200 (931)
......+.. ++.++.|+.++. .+++|+|+||++|.+|+.+....++ .++++|+||||+++|.+|.
T Consensus 96 ~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe 175 (567)
T KOG0345|consen 96 REVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFE 175 (567)
T ss_pred HHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHH
Confidence 887766543 477888887653 4689999999999999988655544 9999999999999999999
Q ss_pred HHHHHHHHhcCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCC--CcceeeeeccCCCceeEeeCccchhchh
Q 002357 201 VVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP--TPLQHYVFPVGGSGLYLVVDEKEQFRED 278 (931)
Q Consensus 201 ~~~~~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp--~pl~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (931)
..++.|+..||+..+.-+||||.....+ +.......+|+.|.+..... +|- +....|.++....
T Consensus 176 ~~~n~ILs~LPKQRRTGLFSATq~~~v~--dL~raGLRNpv~V~V~~k~~~~tPS-------~L~~~Y~v~~a~e----- 241 (567)
T KOG0345|consen 176 ASVNTILSFLPKQRRTGLFSATQTQEVE--DLARAGLRNPVRVSVKEKSKSATPS-------SLALEYLVCEADE----- 241 (567)
T ss_pred HHHHHHHHhcccccccccccchhhHHHH--HHHHhhccCceeeeecccccccCch-------hhcceeeEecHHH-----
Confidence 9999999999999999999999875554 56666667788877665543 431 1112334443332
Q ss_pred hHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChH
Q 002357 279 NFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQE 358 (931)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~ 358 (931)
+...++..+......++|||.+|...++.....+....
T Consensus 242 -------------------------------------K~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l----- 279 (567)
T KOG0345|consen 242 -------------------------------------KLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLL----- 279 (567)
T ss_pred -------------------------------------HHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHh-----
Confidence 23456777777777899999999999999988886631
Q ss_pred HHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcE
Q 002357 359 EKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKT 438 (931)
Q Consensus 359 e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~ 438 (931)
....+..+||.|.+..|..+++.|++..-.+|+|||++|||||+|+++
T Consensus 280 --------------------------------~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD 327 (567)
T KOG0345|consen 280 --------------------------------KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGID 327 (567)
T ss_pred --------------------------------CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCce
Confidence 112378899999999999999999998889999999999999999999
Q ss_pred EEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEe
Q 002357 439 VVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMV 482 (931)
Q Consensus 439 vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~ 482 (931)
+|| .||+ |.++..|+||+||+||.|..|.++++++.
T Consensus 328 ~Vv----Q~Dp----P~~~~~FvHR~GRTaR~gr~G~Aivfl~p 363 (567)
T KOG0345|consen 328 LVV----QFDP----PKDPSSFVHRCGRTARAGREGNAIVFLNP 363 (567)
T ss_pred EEE----ecCC----CCChhHHHhhcchhhhccCccceEEEecc
Confidence 999 8999 99999999999999999997555555544
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-43 Score=413.43 Aligned_cols=314 Identities=20% Similarity=0.237 Sum_probs=246.2
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC----------CCEEEEEcCchhhHHHHHHH
Q 002357 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD----------KQRVIYTSPLKALSNQKYRE 138 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~----------~~rvl~l~P~kaL~~Q~~~~ 138 (931)
...++|+ |+++|.++|+.+.+|+|++++||||||||++|+++++..+.. +.++||++||++|+.|+++.
T Consensus 102 l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~ 181 (475)
T PRK01297 102 IHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKD 181 (475)
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHH
Confidence 3458998 999999999999999999999999999999999999987633 46899999999999999999
Q ss_pred HHHhcC----CeEEEeccccc--------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHH
Q 002357 139 LHQEFK----DVGLMTGDVTL--------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES 206 (931)
Q Consensus 139 l~~~~~----~vg~~tGd~~~--------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~i 206 (931)
++.+.. .+..++|+.+. ...++|+|+||++|..++.++...++++++|||||||.+.+.++...+..+
T Consensus 182 ~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i 261 (475)
T PRK01297 182 AAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQI 261 (475)
T ss_pred HHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHH
Confidence 988754 56667787543 346899999999999988888888999999999999999999888888888
Q ss_pred HHhcCC--CceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCC--CcceeeeeccCCCceeEeeCccchhchhhHHH
Q 002357 207 IIFLPP--AIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP--TPLQHYVFPVGGSGLYLVVDEKEQFREDNFVK 282 (931)
Q Consensus 207 i~~l~~--~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp--~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (931)
+..++. ..|++++|||+++.. .+........+..+....... ..+.++++ .+...
T Consensus 262 ~~~~~~~~~~q~i~~SAT~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------~~~~~---------- 320 (475)
T PRK01297 262 IRQTPRKEERQTLLFSATFTDDV--MNLAKQWTTDPAIVEIEPENVASDTVEQHVY---------AVAGS---------- 320 (475)
T ss_pred HHhCCCCCCceEEEEEeecCHHH--HHHHHHhccCCEEEEeccCcCCCCcccEEEE---------Eecch----------
Confidence 888864 579999999987543 222333333344332221111 11111111 11100
Q ss_pred HHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHH
Q 002357 283 LQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDT 362 (931)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~ 362 (931)
.+...+...+......++||||++++.|+.++..|...++.
T Consensus 321 --------------------------------~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~------- 361 (475)
T PRK01297 321 --------------------------------DKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGIN------- 361 (475)
T ss_pred --------------------------------hHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCC-------
Confidence 01112233334445568999999999999999999765543
Q ss_pred HHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEe
Q 002357 363 VEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFT 442 (931)
Q Consensus 363 i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~ 442 (931)
+..+||++++.+|..+++.|++|.++|||||+++++|||+|++++||
T Consensus 362 --------------------------------~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI- 408 (475)
T PRK01297 362 --------------------------------AAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVI- 408 (475)
T ss_pred --------------------------------EEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEE-
Confidence 57899999999999999999999999999999999999999999999
Q ss_pred cceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 443 AVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 443 ~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
+||. |.+..+|+||+|||||.|.+ |.++++.++.
T Consensus 409 ---~~~~----P~s~~~y~Qr~GRaGR~g~~--g~~i~~~~~~ 442 (475)
T PRK01297 409 ---NFTL----PEDPDDYVHRIGRTGRAGAS--GVSISFAGED 442 (475)
T ss_pred ---EeCC----CCCHHHHHHhhCccCCCCCC--ceEEEEecHH
Confidence 7777 89999999999999999986 5666666544
No 26
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.1e-44 Score=384.46 Aligned_cols=331 Identities=22% Similarity=0.280 Sum_probs=270.2
Q ss_pred hhhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHH------------hCCCEEEEEcCchhhHHH
Q 002357 68 EMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF------------RDKQRVIYTSPLKALSNQ 134 (931)
Q Consensus 68 ~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l------------~~~~rvl~l~P~kaL~~Q 134 (931)
......+|. |+|+|.+|||..++++|+|..|.||||||++|.+|++..+ ..|+.+++++||++|+.|
T Consensus 258 ~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqq 337 (673)
T KOG0333|consen 258 SVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQ 337 (673)
T ss_pred HHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHH
Confidence 355667887 9999999999999999999999999999999999887655 247899999999999999
Q ss_pred HHHHHHHhcCC----eEEEecccc-------cCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHH
Q 002357 135 KYRELHQEFKD----VGLMTGDVT-------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVW 203 (931)
Q Consensus 135 ~~~~l~~~~~~----vg~~tGd~~-------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~ 203 (931)
+.++-.++... +--+.|+.+ +..+++|+|+||++|.+.|.+....+++..+||+|||++|.|.+|...+
T Consensus 338 IeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv 417 (673)
T KOG0333|consen 338 IEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDV 417 (673)
T ss_pred HHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHH
Confidence 99998877653 333556554 4457999999999999999988888999999999999999999999999
Q ss_pred HHHHHhcCC---C----------------------ceEEEeccCCCChHHHHHHHHhhcCCCeEEEec-CCCCCcceeee
Q 002357 204 EESIIFLPP---A----------------------IKMVFLSATMSNATQFAEWICHLHKQPCHVVYT-DFRPTPLQHYV 257 (931)
Q Consensus 204 ~~ii~~l~~---~----------------------~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~-~~rp~pl~~~~ 257 (931)
..++..+|. . .|.++||||+|...+ .....+...|+.+... ..+|+|.-.
T Consensus 418 ~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~ve--rlar~ylr~pv~vtig~~gk~~~rve-- 493 (673)
T KOG0333|consen 418 QKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVE--RLARSYLRRPVVVTIGSAGKPTPRVE-- 493 (673)
T ss_pred HHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHH--HHHHHHhhCCeEEEeccCCCCccchh--
Confidence 999988762 1 689999999998765 5666666778776544 466776521
Q ss_pred eccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEec
Q 002357 258 FPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSF 337 (931)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~ 337 (931)
+....+..+ .+..+|+..+......|+|||+|
T Consensus 494 ------Q~v~m~~ed------------------------------------------~k~kkL~eil~~~~~ppiIIFvN 525 (673)
T KOG0333|consen 494 ------QKVEMVSED------------------------------------------EKRKKLIEILESNFDPPIIIFVN 525 (673)
T ss_pred ------eEEEEecch------------------------------------------HHHHHHHHHHHhCCCCCEEEEEe
Confidence 111122221 22446677777777789999999
Q ss_pred CHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcC
Q 002357 338 SRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEG 417 (931)
Q Consensus 338 sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g 417 (931)
+++.|+.+|+.|.+.++. +..+|||-++++|+..++.|++|
T Consensus 526 ~kk~~d~lAk~LeK~g~~---------------------------------------~~tlHg~k~qeQRe~aL~~fr~~ 566 (673)
T KOG0333|consen 526 TKKGADALAKILEKAGYK---------------------------------------VTTLHGGKSQEQRENALADFREG 566 (673)
T ss_pred chhhHHHHHHHHhhccce---------------------------------------EEEeeCCccHHHHHHHHHHHHhc
Confidence 999999999999998876 47899999999999999999999
Q ss_pred CceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhhc
Q 002357 418 LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLE 497 (931)
Q Consensus 418 ~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~~ 497 (931)
...|||||+++++|||+|++++|| +||. +-+..+|+||+||+||+|+.|++++|+...+..-...++.++..
T Consensus 567 t~dIlVaTDvAgRGIDIpnVSlVi----nydm----aksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~e 638 (673)
T KOG0333|consen 567 TGDILVATDVAGRGIDIPNVSLVI----NYDM----AKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRE 638 (673)
T ss_pred CCCEEEEecccccCCCCCccceee----ecch----hhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHH
Confidence 999999999999999999999999 8998 88999999999999999997555555544433223456655543
No 27
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.4e-44 Score=384.62 Aligned_cols=325 Identities=21% Similarity=0.262 Sum_probs=262.8
Q ss_pred CchhhhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHH-------hCCCEEEEEcCchhhHHHHH
Q 002357 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF-------RDKQRVIYTSPLKALSNQKY 136 (931)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l-------~~~~rvl~l~P~kaL~~Q~~ 136 (931)
.........||+ ++++|..+++.+..|+|+++.|.||+|||++|++|+++.+ +++..++|++|||+|+.|++
T Consensus 92 ~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~ 171 (543)
T KOG0342|consen 92 LTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIF 171 (543)
T ss_pred HHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHH
Confidence 444556678998 9999999999999999999999999999999999999887 34678999999999999999
Q ss_pred HHHHHhcC-----CeEEEeccccc-------CCCCCeeEecHHHHHHHHhcCcc-ccCcccEEEEeccccCCCCCchHHH
Q 002357 137 RELHQEFK-----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSE-VLKEVAWVIFDEIHYMKDRERGVVW 203 (931)
Q Consensus 137 ~~l~~~~~-----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~-~l~~l~~vViDEaH~l~~~~~g~~~ 203 (931)
.+.++... .++++.|+.+. ...++|+|+||++|.+++.+.+. .+++++++|+||||++++.+|...+
T Consensus 172 ~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di 251 (543)
T KOG0342|consen 172 AEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDV 251 (543)
T ss_pred HHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHH
Confidence 98887643 68899998863 34799999999999999977654 4677899999999999999999999
Q ss_pred HHHHHhcCCCceEEEeccCCCChHH-HHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHH
Q 002357 204 EESIIFLPPAIKMVFLSATMSNATQ-FAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVK 282 (931)
Q Consensus 204 ~~ii~~l~~~~q~v~lSAT~~n~~e-~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (931)
+.|+..+|+..|.+++|||.+...+ ++.- ....++.++-..+....+-. .+..+.|++.+...
T Consensus 252 ~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~--~L~~d~~~v~~~d~~~~~Th-----e~l~Qgyvv~~~~~--------- 315 (543)
T KOG0342|consen 252 EQIIKILPKQRQTLLFSATQPSKVKDLARG--ALKRDPVFVNVDDGGERETH-----ERLEQGYVVAPSDS--------- 315 (543)
T ss_pred HHHHHhccccceeeEeeCCCcHHHHHHHHH--hhcCCceEeecCCCCCcchh-----hcccceEEeccccc---------
Confidence 9999999999999999999986653 2222 12224555544443322211 12233444443321
Q ss_pred HHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCC-CcEEEEecCHHHHHHHHHHhccCCCCChHHHH
Q 002357 283 LQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKF-QPVIVFSFSRRECEQHAMSMSKLDFNTQEEKD 361 (931)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~ 361 (931)
.+..+...+.++.. .++||||.|...+..++..|...+++
T Consensus 316 ---------------------------------~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlp------ 356 (543)
T KOG0342|consen 316 ---------------------------------RFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLP------ 356 (543)
T ss_pred ---------------------------------hHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCc------
Confidence 13345555555543 79999999999999999999877766
Q ss_pred HHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEE
Q 002357 362 TVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVF 441 (931)
Q Consensus 362 ~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI 441 (931)
|..+||++++..|..+...|++.+.-||||||++|||+|+|++++|+
T Consensus 357 ---------------------------------v~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~Vv 403 (543)
T KOG0342|consen 357 ---------------------------------VLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVV 403 (543)
T ss_pred ---------------------------------hhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEE
Confidence 46689999999999999999999999999999999999999999999
Q ss_pred ecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 442 TAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 442 ~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
.||+ |.++.+|+||+||+||.|..|.|..++.+.+.
T Consensus 404 ----Q~~~----P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El 439 (543)
T KOG0342|consen 404 ----QYDP----PSDPEQYIHRVGRTAREGKEGKALLLLAPWEL 439 (543)
T ss_pred ----EeCC----CCCHHHHHHHhccccccCCCceEEEEeChhHH
Confidence 8888 99999999999999999987666555554433
No 28
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.5e-43 Score=426.99 Aligned_cols=335 Identities=18% Similarity=0.219 Sum_probs=249.4
Q ss_pred hhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh--CCCEEEEEcCchhhHHHHHHHHHHhcC-
Q 002357 69 MAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR--DKQRVIYTSPLKALSNQKYRELHQEFK- 144 (931)
Q Consensus 69 ~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~--~~~rvl~l~P~kaL~~Q~~~~l~~~~~- 144 (931)
.....+|+ |+++|.+|++.+.+|+|++++||||||||++|.+|++..+. .+.++||++|||||++|+++.++++..
T Consensus 28 ~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~ 107 (742)
T TIGR03817 28 ALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLR 107 (742)
T ss_pred HHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccC
Confidence 33457886 99999999999999999999999999999999999998874 357999999999999999999998752
Q ss_pred --CeEEEeccccc------CCCCCeeEecHHHHHHHHhcC----ccccCcccEEEEeccccCCCCCchHHHHHHHHh---
Q 002357 145 --DVGLMTGDVTL------SPNASCLVMTTEILRGMLYRG----SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF--- 209 (931)
Q Consensus 145 --~vg~~tGd~~~------~~~~~IlV~Tpe~L~~~l~~~----~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~--- 209 (931)
.++.++|+.+. ..+++|+|+||++|...+... ...++++++||+||||.+.+ .||..+..++..
T Consensus 108 ~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~r 186 (742)
T TIGR03817 108 GVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRR 186 (742)
T ss_pred CeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHH
Confidence 57778898763 346899999999997543221 23478999999999999987 478777666544
Q ss_pred ----cCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHH
Q 002357 210 ----LPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQD 285 (931)
Q Consensus 210 ----l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (931)
.+.+.|++++|||++|..++++++.. .++.++..+..|....++.+.... ........+.
T Consensus 187 i~~~~g~~~q~i~~SATi~n~~~~~~~l~g---~~~~~i~~~~~~~~~~~~~~~~p~--~~~~~~~~~~----------- 250 (742)
T TIGR03817 187 LCARYGASPVFVLASATTADPAAAASRLIG---APVVAVTEDGSPRGARTVALWEPP--LTELTGENGA----------- 250 (742)
T ss_pred HHHhcCCCCEEEEEecCCCCHHHHHHHHcC---CCeEEECCCCCCcCceEEEEecCC--cccccccccc-----------
Confidence 35678999999999999988777543 456665555555443333221110 0000000000
Q ss_pred HHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHH
Q 002357 286 TFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQ 365 (931)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~ 365 (931)
. ...........++..+... ..++||||+|++.|+.++..|......
T Consensus 251 -------------------~---~r~~~~~~~~~~l~~l~~~-~~~~IVF~~sr~~ae~l~~~l~~~l~~---------- 297 (742)
T TIGR03817 251 -------------------P---VRRSASAEAADLLADLVAE-GARTLTFVRSRRGAELVAAIARRLLGE---------- 297 (742)
T ss_pred -------------------c---cccchHHHHHHHHHHHHHC-CCCEEEEcCCHHHHHHHHHHHHHHHHh----------
Confidence 0 0000011122334444333 478999999999999999988541000
Q ss_pred HHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecce
Q 002357 366 VFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVK 445 (931)
Q Consensus 366 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~ 445 (931)
..+.+..++..||||+++.+|..+++.|++|++++||||+++++|||+|++++||
T Consensus 298 ---------------------~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI---- 352 (742)
T TIGR03817 298 ---------------------VDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVV---- 352 (742)
T ss_pred ---------------------hccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEE----
Confidence 0011223578999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCC
Q 002357 446 KWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDE 484 (931)
Q Consensus 446 ~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~ 484 (931)
+||. |.+..+|+||+|||||.|.+ |.++++..+
T Consensus 353 ~~~~----P~s~~~y~qRiGRaGR~G~~--g~ai~v~~~ 385 (742)
T TIGR03817 353 IAGF----PGTRASLWQQAGRAGRRGQG--ALVVLVARD 385 (742)
T ss_pred EeCC----CCCHHHHHHhccccCCCCCC--cEEEEEeCC
Confidence 7777 89999999999999999985 777777764
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2e-43 Score=405.10 Aligned_cols=316 Identities=20% Similarity=0.312 Sum_probs=248.3
Q ss_pred ccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh---CCCEEEEEcCchhhHHHHHHHHHHhcC--
Q 002357 71 KTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEFK-- 144 (931)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~---~~~rvl~l~P~kaL~~Q~~~~l~~~~~-- 144 (931)
..++|+ |+|+|.+|++.+.+|++++++||||||||++|+++++..+. .+.++||++|+++|++|+++.+...+.
T Consensus 44 ~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 123 (401)
T PTZ00424 44 YSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYL 123 (401)
T ss_pred HHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhc
Confidence 446887 99999999999999999999999999999999999998875 467899999999999999998888765
Q ss_pred --CeEEEeccccc-------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCce
Q 002357 145 --DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIK 215 (931)
Q Consensus 145 --~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q 215 (931)
.++.+.|+... ..+++|+|+||+++.+++.++...++++++||+||||++.+.+++..+.+++..+++..|
T Consensus 124 ~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~ 203 (401)
T PTZ00424 124 KVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQ 203 (401)
T ss_pred CceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcE
Confidence 34455666532 345799999999999999887778999999999999999998888889999999999999
Q ss_pred EEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCC
Q 002357 216 MVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGR 295 (931)
Q Consensus 216 ~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 295 (931)
++++|||+++.. ..+.......+..+...... ..+. +....+...+ ...+
T Consensus 204 ~i~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~-~~~~-------------------- 253 (401)
T PTZ00424 204 VALFSATMPNEI--LELTTKFMRDPKRILVKKDE-LTLE------GIRQFYVAVE-KEEW-------------------- 253 (401)
T ss_pred EEEEEecCCHHH--HHHHHHHcCCCEEEEeCCCC-cccC------CceEEEEecC-hHHH--------------------
Confidence 999999998653 34444444444443322211 1110 0011111111 0000
Q ss_pred cCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcC
Q 002357 296 RENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLN 375 (931)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~ 375 (931)
....+...+......++||||++++.|+.++..|...++.
T Consensus 254 --------------------~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~-------------------- 293 (401)
T PTZ00424 254 --------------------KFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFT-------------------- 293 (401)
T ss_pred --------------------HHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCc--------------------
Confidence 1112222333334568999999999999999998765443
Q ss_pred cccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCccc
Q 002357 376 EEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYI 455 (931)
Q Consensus 376 ~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~ 455 (931)
+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++|| .||. |.
T Consensus 294 -------------------~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI----~~~~----p~ 346 (401)
T PTZ00424 294 -------------------VSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVI----NYDL----PA 346 (401)
T ss_pred -------------------EEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEE----EECC----CC
Confidence 68999999999999999999999999999999999999999999999 7777 88
Q ss_pred CHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 456 GSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 456 s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
+..+|+||+|||||.|.. |.|++++++.
T Consensus 347 s~~~y~qr~GRagR~g~~--G~~i~l~~~~ 374 (401)
T PTZ00424 347 SPENYIHRIGRSGRFGRK--GVAINFVTPD 374 (401)
T ss_pred CHHHEeecccccccCCCC--ceEEEEEcHH
Confidence 999999999999999974 7788888654
No 30
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-43 Score=378.91 Aligned_cols=334 Identities=22% Similarity=0.242 Sum_probs=269.1
Q ss_pred ccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh-------CCCEEEEEcCchhhHHHHHHHHHHh
Q 002357 71 KTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-------DKQRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~-------~~~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
..-+|. ++.+|+++|+..+.|++|+.+|.||||||++|+.|+++++- .|.-+||++|||+|+.|++..+.+.
T Consensus 85 ke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kv 164 (758)
T KOG0343|consen 85 KEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKV 164 (758)
T ss_pred hhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHH
Confidence 345676 99999999999999999999999999999999999999983 4678999999999999999999998
Q ss_pred cC----CeEEEecccccC------CCCCeeEecHHHHHHHHhcCc-cccCcccEEEEeccccCCCCCchHHHHHHHHhcC
Q 002357 143 FK----DVGLMTGDVTLS------PNASCLVMTTEILRGMLYRGS-EVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP 211 (931)
Q Consensus 143 ~~----~vg~~tGd~~~~------~~~~IlV~Tpe~L~~~l~~~~-~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~ 211 (931)
+. ..|++.|+.... .+.+|+||||++|..++.... ....++.++|+||||+|+|++|...++.|+..+|
T Consensus 165 gk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP 244 (758)
T KOG0343|consen 165 GKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLP 244 (758)
T ss_pred hhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCC
Confidence 76 789999988753 368999999999999886654 3467899999999999999999999999999999
Q ss_pred CCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecC----CCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHH
Q 002357 212 PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTD----FRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTF 287 (931)
Q Consensus 212 ~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~----~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 287 (931)
++.|.++||||..+.. .+.......+|.+|-+.. ..|..|+ +.|+++...
T Consensus 245 ~~RQTLLFSATqt~sv--kdLaRLsL~dP~~vsvhe~a~~atP~~L~---------Q~y~~v~l~--------------- 298 (758)
T KOG0343|consen 245 KKRQTLLFSATQTKSV--KDLARLSLKDPVYVSVHENAVAATPSNLQ---------QSYVIVPLE--------------- 298 (758)
T ss_pred hhheeeeeecccchhH--HHHHHhhcCCCcEEEEeccccccChhhhh---------heEEEEehh---------------
Confidence 9999999999987654 355555556676665542 2233333 344444332
Q ss_pred HhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHH
Q 002357 288 LKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVF 367 (931)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~ 367 (931)
.++..|-..+..+-..+.|||+.|.+.+..++..++++....+
T Consensus 299 ---------------------------~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~---------- 341 (758)
T KOG0343|consen 299 ---------------------------DKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIP---------- 341 (758)
T ss_pred ---------------------------hHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCc----------
Confidence 2233445555556667899999999999999999987544321
Q ss_pred HHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceec
Q 002357 368 QNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKW 447 (931)
Q Consensus 368 ~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~ 447 (931)
+-.+||+|.+..|..|...|-+..--|||||++++||+|+|++++|| .+
T Consensus 342 ---------------------------l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwVi----Q~ 390 (758)
T KOG0343|consen 342 ---------------------------LLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVI----QV 390 (758)
T ss_pred ---------------------------eeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEE----Ee
Confidence 56789999999999999999999999999999999999999999999 88
Q ss_pred CCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhhccCCChHHH
Q 002357 448 DGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLEGQFTAEHV 505 (931)
Q Consensus 448 d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~~~~~~~e~~ 505 (931)
|. |-++.+|+||+||+.|.+.. |.++++..+..+...+.++-.. .+.++.+
T Consensus 391 DC----Pedv~tYIHRvGRtAR~~~~--G~sll~L~psEeE~~l~~Lq~k-~I~i~~i 441 (758)
T KOG0343|consen 391 DC----PEDVDTYIHRVGRTARYKER--GESLLMLTPSEEEAMLKKLQKK-KIPIKEI 441 (758)
T ss_pred cC----chhHHHHHHHhhhhhcccCC--CceEEEEcchhHHHHHHHHHHc-CCCHHhh
Confidence 88 99999999999999999875 6666666665334455554333 3444443
No 31
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-42 Score=372.50 Aligned_cols=360 Identities=20% Similarity=0.269 Sum_probs=260.8
Q ss_pred hhccccCCCCCchhhhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh---------CCCEEEE
Q 002357 55 AIHGTFANPVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---------DKQRVIY 124 (931)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~---------~~~rvl~ 124 (931)
.+....-++.+...+...+.+. ||.+|+++||.+++|+|++|.|+||||||++|++|+.+.+. .|.-+||
T Consensus 137 ~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALV 216 (708)
T KOG0348|consen 137 AFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALV 216 (708)
T ss_pred cchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEE
Confidence 3344444556777888899998 99999999999999999999999999999999999999883 4678999
Q ss_pred EcCchhhHHHHHHHHHHhcCCe-----EEEecccc-------cCCCCCeeEecHHHHHHHHhcCc-cccCcccEEEEecc
Q 002357 125 TSPLKALSNQKYRELHQEFKDV-----GLMTGDVT-------LSPNASCLVMTTEILRGMLYRGS-EVLKEVAWVIFDEI 191 (931)
Q Consensus 125 l~P~kaL~~Q~~~~l~~~~~~v-----g~~tGd~~-------~~~~~~IlV~Tpe~L~~~l~~~~-~~l~~l~~vViDEa 191 (931)
++|||+||.|+|+.+.++.... |.+-||.. +..+.+|+|+||++|.++|.+.. ..+..+.||||||+
T Consensus 217 ivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEa 296 (708)
T KOG0348|consen 217 IVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEA 296 (708)
T ss_pred EechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecch
Confidence 9999999999999999987642 44555543 34578999999999999997653 45788999999999
Q ss_pred ccCCCCCchHHHHHHHHhc-------------CCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCC---c---
Q 002357 192 HYMKDRERGVVWEESIIFL-------------PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPT---P--- 252 (931)
Q Consensus 192 H~l~~~~~g~~~~~ii~~l-------------~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~---p--- 252 (931)
|++.+.+|+..+..|+..+ |...|-+++|||+.+... +.-+....+|+++- .+.... |
T Consensus 297 DrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~--rLa~~sLkDpv~I~-ld~s~~~~~p~~~ 373 (708)
T KOG0348|consen 297 DRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVN--RLADLSLKDPVYIS-LDKSHSQLNPKDK 373 (708)
T ss_pred hHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHH--HHhhccccCceeee-ccchhhhcCcchh
Confidence 9999999999999988765 335788999999986543 43444445565554 111100 0
Q ss_pred -------------ceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHH
Q 002357 253 -------------LQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFK 319 (931)
Q Consensus 253 -------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (931)
+..+..|....+-|.+++. .-.+..
T Consensus 374 a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPp------------------------------------------KLRLV~ 411 (708)
T KOG0348|consen 374 AVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPP------------------------------------------KLRLVA 411 (708)
T ss_pred hhhhcCCcccccccccccCcHHhhhceEecCC------------------------------------------chhHHH
Confidence 0011111111111222211 112222
Q ss_pred HHHHH----HHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhc-c
Q 002357 320 IVKMI----MERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKR-G 394 (931)
Q Consensus 320 ll~~l----~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~-g 394 (931)
|...| ......++|||..+...++.-+..+........ +.+..-|.-..+.++... .
T Consensus 412 Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~------------------e~~s~~~~s~g~~~l~~~~k 473 (708)
T KOG0348|consen 412 LAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHL------------------EGSSGAPDSEGLPPLFMDLK 473 (708)
T ss_pred HHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccc------------------ccccCCcccCCChhhhhcce
Confidence 32222 223556899999999999998888865322210 001111111112222222 2
Q ss_pred ceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCC
Q 002357 395 IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDD 474 (931)
Q Consensus 395 i~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~ 474 (931)
+.-+||+|.+++|..+++.|....-.||+|||+++||+|+|.+++|| .||+ |.++++|+||+||+.|.|..|
T Consensus 474 ~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vV----QYd~----P~s~adylHRvGRTARaG~kG 545 (708)
T KOG0348|consen 474 FYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVV----QYDP----PFSTADYLHRVGRTARAGEKG 545 (708)
T ss_pred EEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEE----EeCC----CCCHHHHHHHhhhhhhccCCC
Confidence 67789999999999999999998888999999999999999999999 8998 999999999999999999976
Q ss_pred ceEEEEEeCCc
Q 002357 475 RGICIIMVDEQ 485 (931)
Q Consensus 475 ~g~~ii~~~~~ 485 (931)
.+..|+++.+.
T Consensus 546 ~alLfL~P~Ea 556 (708)
T KOG0348|consen 546 EALLFLLPSEA 556 (708)
T ss_pred ceEEEecccHH
Confidence 66666655443
No 32
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.6e-42 Score=398.70 Aligned_cols=321 Identities=21% Similarity=0.291 Sum_probs=240.9
Q ss_pred hhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeE
Q 002357 69 MAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVG 147 (931)
Q Consensus 69 ~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg 147 (931)
+...|+|+ |+|+|.++|+.+.+|+++++++|||+|||++|++|++. .+..+||++|+++|+.|+++.+......+.
T Consensus 3 l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~---~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~ 79 (470)
T TIGR00614 3 LKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC---SDGITLVISPLISLMEDQVLQLKASGIPAT 79 (470)
T ss_pred hHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH---cCCcEEEEecHHHHHHHHHHHHHHcCCcEE
Confidence 45678998 99999999999999999999999999999999999765 467899999999999999999998776888
Q ss_pred EEeccccc-----------CCCCCeeEecHHHHHHHH--hcCccccCcccEEEEeccccCCCCCc--hHHHHHH--HHhc
Q 002357 148 LMTGDVTL-----------SPNASCLVMTTEILRGML--YRGSEVLKEVAWVIFDEIHYMKDRER--GVVWEES--IIFL 210 (931)
Q Consensus 148 ~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l--~~~~~~l~~l~~vViDEaH~l~~~~~--g~~~~~i--i~~l 210 (931)
.++|+... +...+|+++|||++.... ........++++|||||||++.+|++ ...+..+ +...
T Consensus 80 ~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~ 159 (470)
T TIGR00614 80 FLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQK 159 (470)
T ss_pred EEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHH
Confidence 88887653 345899999999875321 11111467899999999999998753 2333332 2222
Q ss_pred CCCceEEEeccCCCChH--HHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHH
Q 002357 211 PPAIKMVFLSATMSNAT--QFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFL 288 (931)
Q Consensus 211 ~~~~q~v~lSAT~~n~~--e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 288 (931)
.+.+++++||||+++.. ++..+++.. .+ .++..+.....+ +..+....
T Consensus 160 ~~~~~~l~lTAT~~~~~~~di~~~l~l~--~~-~~~~~s~~r~nl------------~~~v~~~~--------------- 209 (470)
T TIGR00614 160 FPNVPIMALTATASPSVREDILRQLNLK--NP-QIFCTSFDRPNL------------YYEVRRKT--------------- 209 (470)
T ss_pred cCCCceEEEecCCCHHHHHHHHHHcCCC--CC-cEEeCCCCCCCc------------EEEEEeCC---------------
Confidence 35789999999998653 344444321 12 222222211111 11111000
Q ss_pred hhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHH-HcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHH
Q 002357 289 KQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIM-ERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVF 367 (931)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~-~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~ 367 (931)
...+..++..+. ...+..+||||+|++.|+.++..|.+.++.
T Consensus 210 -------------------------~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~------------ 252 (470)
T TIGR00614 210 -------------------------PKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIA------------ 252 (470)
T ss_pred -------------------------ccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCC------------
Confidence 012234455554 234456799999999999999999876654
Q ss_pred HHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceec
Q 002357 368 QNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKW 447 (931)
Q Consensus 368 ~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~ 447 (931)
++.+||+|++.+|+.+++.|++|.++|||||+++++|||+|++++|| +|
T Consensus 253 ---------------------------~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI----~~ 301 (470)
T TIGR00614 253 ---------------------------AGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVI----HY 301 (470)
T ss_pred ---------------------------eeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEE----Ee
Confidence 57899999999999999999999999999999999999999999999 77
Q ss_pred CCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhhc
Q 002357 448 DGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLE 497 (931)
Q Consensus 448 d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~~ 497 (931)
|. |.+..+|+||+|||||.|.. |.+++++++. +...++.++..
T Consensus 302 ~~----P~s~~~y~Qr~GRaGR~G~~--~~~~~~~~~~-d~~~~~~~~~~ 344 (470)
T TIGR00614 302 SL----PKSMESYYQESGRAGRDGLP--SECHLFYAPA-DINRLRRLLME 344 (470)
T ss_pred CC----CCCHHHHHhhhcCcCCCCCC--ceEEEEechh-HHHHHHHHHhc
Confidence 77 89999999999999999985 7778877765 55566666544
No 33
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=6.8e-42 Score=407.24 Aligned_cols=322 Identities=21% Similarity=0.265 Sum_probs=241.0
Q ss_pred hhhhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCC
Q 002357 67 GEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKD 145 (931)
Q Consensus 67 ~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~ 145 (931)
......|||. |+|+|.++|++++.|+|+++.+|||+|||++|++|++.. ++.+|||+|+++|+.++...+....-.
T Consensus 450 ~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---~GiTLVISPLiSLmqDQV~~L~~~GI~ 526 (1195)
T PLN03137 450 VNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQIMNLLQANIP 526 (1195)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---CCcEEEEeCHHHHHHHHHHHHHhCCCe
Confidence 4456678987 999999999999999999999999999999999998754 678999999999999888888776667
Q ss_pred eEEEeccccc-------------CCCCCeeEecHHHHHH--HHhcC---ccccCcccEEEEeccccCCCCC--chHHHHH
Q 002357 146 VGLMTGDVTL-------------SPNASCLVMTTEILRG--MLYRG---SEVLKEVAWVIFDEIHYMKDRE--RGVVWEE 205 (931)
Q Consensus 146 vg~~tGd~~~-------------~~~~~IlV~Tpe~L~~--~l~~~---~~~l~~l~~vViDEaH~l~~~~--~g~~~~~ 205 (931)
+..+.|+... ....+|+|+|||+|.. .+.+. ......+.+|||||||++.+|+ |...+..
T Consensus 527 Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~ 606 (1195)
T PLN03137 527 AASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQG 606 (1195)
T ss_pred EEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHH
Confidence 7777776542 1468999999999852 11111 1113458999999999999986 4444444
Q ss_pred H--HHhcCCCceEEEeccCCCChH--HHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHH
Q 002357 206 S--IIFLPPAIKMVFLSATMSNAT--QFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFV 281 (931)
Q Consensus 206 i--i~~l~~~~q~v~lSAT~~n~~--e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (931)
+ +....+.+++++||||.+... ++...++ .....++...+....+. +.++...
T Consensus 607 L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~---l~~~~vfr~Sf~RpNL~-----------y~Vv~k~--------- 663 (1195)
T PLN03137 607 LGILKQKFPNIPVLALTATATASVKEDVVQALG---LVNCVVFRQSFNRPNLW-----------YSVVPKT--------- 663 (1195)
T ss_pred HHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcC---CCCcEEeecccCccceE-----------EEEeccc---------
Confidence 3 333345788999999997543 3444443 22333333332222121 1111110
Q ss_pred HHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHc-CCCcEEEEecCHHHHHHHHHHhccCCCCChHHH
Q 002357 282 KLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMER-KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEK 360 (931)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~ 360 (931)
...+..+.+.+... ...++||||.|++.|+.++..|...|+.
T Consensus 664 --------------------------------kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gik----- 706 (1195)
T PLN03137 664 --------------------------------KKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHK----- 706 (1195)
T ss_pred --------------------------------hhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCC-----
Confidence 00112233333322 2457999999999999999999887765
Q ss_pred HHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEE
Q 002357 361 DTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440 (931)
Q Consensus 361 ~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vV 440 (931)
+..|||||++.+|+.+++.|.+|.++|||||++|+||||+|++++|
T Consensus 707 ----------------------------------a~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~V 752 (1195)
T PLN03137 707 ----------------------------------AAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFV 752 (1195)
T ss_pred ----------------------------------eeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEE
Confidence 5889999999999999999999999999999999999999999999
Q ss_pred EecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhh
Q 002357 441 FTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVL 496 (931)
Q Consensus 441 I~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~ 496 (931)
| +||. |.+.+.|+||+|||||.|.. |.|++++... +...++.++.
T Consensus 753 I----Hydl----PkSiEsYyQriGRAGRDG~~--g~cILlys~~-D~~~~~~lI~ 797 (1195)
T PLN03137 753 I----HHSL----PKSIEGYHQECGRAGRDGQR--SSCVLYYSYS-DYIRVKHMIS 797 (1195)
T ss_pred E----EcCC----CCCHHHHHhhhcccCCCCCC--ceEEEEecHH-HHHHHHHHHh
Confidence 9 7888 99999999999999999985 7888888654 5555666654
No 34
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-43 Score=353.43 Aligned_cols=322 Identities=21% Similarity=0.293 Sum_probs=263.6
Q ss_pred CCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCC---CEEEEEcCchhhHHHHHHHHHHhcC----
Q 002357 73 YSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK---QRVIYTSPLKALSNQKYRELHQEFK---- 144 (931)
Q Consensus 73 ~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~---~rvl~l~P~kaL~~Q~~~~l~~~~~---- 144 (931)
.||+ |+|+|.++||..+.|+|+++-|..|+|||.+|.+|+++.+... -.+++++||++|+-|..+..++...
T Consensus 103 ~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i 182 (459)
T KOG0326|consen 103 KGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGI 182 (459)
T ss_pred hccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCe
Confidence 5888 9999999999999999999999999999999999999998543 5789999999999998777766654
Q ss_pred CeEEEecccccC-------CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEE
Q 002357 145 DVGLMTGDVTLS-------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMV 217 (931)
Q Consensus 145 ~vg~~tGd~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v 217 (931)
.|-..||++++. ...+++|+||+++.++..++-..+++..++|+||||.+++.+|+..++.++..+|++.|++
T Consensus 183 ~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQil 262 (459)
T KOG0326|consen 183 KVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQIL 262 (459)
T ss_pred EEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceee
Confidence 456678988754 4679999999999999999988999999999999999999999999999999999999999
Q ss_pred EeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcC
Q 002357 218 FLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRE 297 (931)
Q Consensus 218 ~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 297 (931)
++|||.|.... .|+.....+|..+-.- .-+...+..++|-.+++..+.
T Consensus 263 lySATFP~tVk--~Fm~~~l~kPy~INLM--------~eLtl~GvtQyYafV~e~qKv---------------------- 310 (459)
T KOG0326|consen 263 LYSATFPLTVK--GFMDRHLKKPYEINLM--------EELTLKGVTQYYAFVEERQKV---------------------- 310 (459)
T ss_pred EEecccchhHH--HHHHHhccCcceeehh--------hhhhhcchhhheeeechhhhh----------------------
Confidence 99999997654 6666666655443211 111112233444444443221
Q ss_pred CCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcc
Q 002357 298 NGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEE 377 (931)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~ 377 (931)
..+..+... ..-.+.||||||...++.+|..+.++|+.+
T Consensus 311 -----------------hCLntLfsk---LqINQsIIFCNS~~rVELLAkKITelGysc--------------------- 349 (459)
T KOG0326|consen 311 -----------------HCLNTLFSK---LQINQSIIFCNSTNRVELLAKKITELGYSC--------------------- 349 (459)
T ss_pred -----------------hhHHHHHHH---hcccceEEEeccchHhHHHHHHHHhccchh---------------------
Confidence 111222222 234579999999999999999999999875
Q ss_pred cCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCH
Q 002357 378 DRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGS 457 (931)
Q Consensus 378 d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~ 457 (931)
.++|+.|.++.|..|+..|++|..+.|||||.+-||||+++++||| +||. |.++
T Consensus 350 ------------------yyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVI----NFDf----pk~a 403 (459)
T KOG0326|consen 350 ------------------YYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVI----NFDF----PKNA 403 (459)
T ss_pred ------------------hHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEE----ecCC----CCCH
Confidence 5789999999999999999999999999999999999999999999 8999 9999
Q ss_pred HHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHh
Q 002357 458 GEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKD 493 (931)
Q Consensus 458 ~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~ 493 (931)
++|.||+||+||.|.-|.++.++.+.+......++.
T Consensus 404 EtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~ 439 (459)
T KOG0326|consen 404 ETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQ 439 (459)
T ss_pred HHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHH
Confidence 999999999999999777777776666644444433
No 35
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.8e-41 Score=417.10 Aligned_cols=323 Identities=26% Similarity=0.384 Sum_probs=239.2
Q ss_pred CCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh---------CCCEEEEEcCchhhHHHHHHHHHH--
Q 002357 74 SFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---------DKQRVIYTSPLKALSNQKYRELHQ-- 141 (931)
Q Consensus 74 ~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~---------~~~rvl~l~P~kaL~~Q~~~~l~~-- 141 (931)
+|. |+|+|.+|++.+.+|+|++++||||||||++|.+|++..+. ++.++||++|++||++|+++.+..
T Consensus 29 ~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l 108 (876)
T PRK13767 29 KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPL 108 (876)
T ss_pred ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHH
Confidence 344 99999999999999999999999999999999999987763 245799999999999999986653
Q ss_pred -----hc--------C-CeEEEeccccc-------CCCCCeeEecHHHHHHHHhcCc--cccCcccEEEEeccccCCCCC
Q 002357 142 -----EF--------K-DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGS--EVLKEVAWVIFDEIHYMKDRE 198 (931)
Q Consensus 142 -----~~--------~-~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~--~~l~~l~~vViDEaH~l~~~~ 198 (931)
.. + .+++.+||++. ...++|+|+|||+|..++.... ..++++++||+||||.+.+..
T Consensus 109 ~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~ 188 (876)
T PRK13767 109 TEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENK 188 (876)
T ss_pred HHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCc
Confidence 21 1 56789999863 2368999999999987775442 357899999999999999989
Q ss_pred chHHHHHHHHh----cCCCceEEEeccCCCChHHHHHHHHhhc----CCCeEEEecCC-CCCcceeeeeccCCCceeEee
Q 002357 199 RGVVWEESIIF----LPPAIKMVFLSATMSNATQFAEWICHLH----KQPCHVVYTDF-RPTPLQHYVFPVGGSGLYLVV 269 (931)
Q Consensus 199 ~g~~~~~ii~~----l~~~~q~v~lSAT~~n~~e~~~~l~~~~----~~~~~v~~~~~-rp~pl~~~~~~~~~~~~~~~~ 269 (931)
||..++..+.. .+...|++++|||++|..+++.|+.... ..++.++.... ++..+. ...+.. .+.
T Consensus 189 RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~-v~~p~~--~l~--- 262 (876)
T PRK13767 189 RGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIK-VISPVD--DLI--- 262 (876)
T ss_pred cHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEE-EeccCc--ccc---
Confidence 99887766543 3467899999999999999999997542 22333332221 111110 000000 000
Q ss_pred CccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHh
Q 002357 270 DEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSM 349 (931)
Q Consensus 270 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L 349 (931)
.... ......+...+..+.. ...++||||+|++.|+.++..|
T Consensus 263 ~~~~-------------------------------------~~~~~~l~~~L~~~i~-~~~~~LVF~nTr~~ae~la~~L 304 (876)
T PRK13767 263 HTPA-------------------------------------EEISEALYETLHELIK-EHRTTLIFTNTRSGAERVLYNL 304 (876)
T ss_pred cccc-------------------------------------chhHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHH
Confidence 0000 0000111122222222 3468999999999999999998
Q ss_pred ccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhh
Q 002357 350 SKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFA 429 (931)
Q Consensus 350 ~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la 429 (931)
.+.... .....++++|||+|++.+|..+++.|++|.++|||||++++
T Consensus 305 ~~~~~~---------------------------------~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le 351 (876)
T PRK13767 305 RKRFPE---------------------------------EYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLE 351 (876)
T ss_pred HHhchh---------------------------------hccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHH
Confidence 652110 01124689999999999999999999999999999999999
Q ss_pred cccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCC-CCCceEEEEE
Q 002357 430 MGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRG-KDDRGICIIM 481 (931)
Q Consensus 430 ~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G-~~~~g~~ii~ 481 (931)
+|||+|++++|| .|+. |.+..+|+||+|||||++ ..+.|.++..
T Consensus 352 ~GIDip~Vd~VI----~~~~----P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 352 LGIDIGYIDLVV----LLGS----PKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred hcCCCCCCcEEE----EeCC----CCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 999999999999 6777 889999999999999974 4466777764
No 36
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-42 Score=353.54 Aligned_cols=326 Identities=19% Similarity=0.259 Sum_probs=253.8
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC---CCEEEEEcCchhhHHHHHHHHHHhcC-
Q 002357 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYRELHQEFK- 144 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~---~~rvl~l~P~kaL~~Q~~~~l~~~~~- 144 (931)
...++.. |+|+|..+||.++.|+|++.+|.||||||.+|.+|+++.+.. |--++|++||++|+-|+.+.|.....
T Consensus 22 l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~ 101 (442)
T KOG0340|consen 22 LKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKL 101 (442)
T ss_pred HHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhccc
Confidence 3445655 999999999999999999999999999999999999999965 45789999999999999999998876
Q ss_pred ---CeEEEecccc-------cCCCCCeeEecHHHHHHHHhcC----ccccCcccEEEEeccccCCCCCchHHHHHHHHhc
Q 002357 145 ---DVGLMTGDVT-------LSPNASCLVMTTEILRGMLYRG----SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL 210 (931)
Q Consensus 145 ---~vg~~tGd~~-------~~~~~~IlV~Tpe~L~~~l~~~----~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l 210 (931)
.+.++.|+.. +...++++|||||++..++... ...++++.++|+|||+.+.+..|...++.+...+
T Consensus 102 l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~l 181 (442)
T KOG0340|consen 102 LNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECL 181 (442)
T ss_pred ccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccC
Confidence 5677888775 4567999999999999888655 3457899999999999999999999999999999
Q ss_pred CCCceEEEeccCCCChHHHHHHHHhhcCCC-eEEEec-CCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHH
Q 002357 211 PPAIKMVFLSATMSNATQFAEWICHLHKQP-CHVVYT-DFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFL 288 (931)
Q Consensus 211 ~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~-~~v~~~-~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 288 (931)
|...|.++||||+.+... ...+.-...+ .+.... +.-+++- - ..+-|..++..
T Consensus 182 P~~RQtLlfSATitd~i~--ql~~~~i~k~~a~~~e~~~~vstve--t-----L~q~yI~~~~~---------------- 236 (442)
T KOG0340|consen 182 PKPRQTLLFSATITDTIK--QLFGCPITKSIAFELEVIDGVSTVE--T-----LYQGYILVSID---------------- 236 (442)
T ss_pred CCccceEEEEeehhhHHH--HhhcCCcccccceEEeccCCCCchh--h-----hhhheeecchh----------------
Confidence 999999999999985542 2222111111 111111 1111110 0 01112222111
Q ss_pred hhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHH
Q 002357 289 KQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQ 368 (931)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~ 368 (931)
.....+..+++.........++||+++...|+.++..|..+++.
T Consensus 237 -----------------------vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r------------- 280 (442)
T KOG0340|consen 237 -----------------------VKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVR------------- 280 (442)
T ss_pred -----------------------hhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhcee-------------
Confidence 01122334455554445678999999999999999999886654
Q ss_pred HHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecC
Q 002357 369 NAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448 (931)
Q Consensus 369 ~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d 448 (931)
++.+||.|++.+|-..+..|+++.++||+|||++++|+|+|.+.+|| +||
T Consensus 281 --------------------------~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVv----N~d 330 (442)
T KOG0340|consen 281 --------------------------VVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVV----NHD 330 (442)
T ss_pred --------------------------eeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEE----ecC
Confidence 68899999999999999999999999999999999999999999999 888
Q ss_pred CCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHh
Q 002357 449 GDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKD 493 (931)
Q Consensus 449 ~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~ 493 (931)
. |.+|.+|+||+||+.|+|..|.+++|+. +. |.+.+..
T Consensus 331 i----Pr~P~~yiHRvGRtARAGR~G~aiSivt--~r-Dv~l~~a 368 (442)
T KOG0340|consen 331 I----PRDPKDYIHRVGRTARAGRKGMAISIVT--QR-DVELLQA 368 (442)
T ss_pred C----CCCHHHHHHhhcchhcccCCcceEEEec--hh-hHHHHHH
Confidence 8 9999999999999999999766666665 32 4444443
No 37
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-42 Score=357.11 Aligned_cols=330 Identities=20% Similarity=0.247 Sum_probs=258.3
Q ss_pred hhhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHH---------hCCCEEEEEcCchhhHHHHHH
Q 002357 68 EMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF---------RDKQRVIYTSPLKALSNQKYR 137 (931)
Q Consensus 68 ~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l---------~~~~rvl~l~P~kaL~~Q~~~ 137 (931)
+-..+.||+ |+|+|.+|||.+++|.+++..|.||+|||++|++|-...+ ..+..+|+++||++|+.|+.-
T Consensus 233 enIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~ 312 (629)
T KOG0336|consen 233 ENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEG 312 (629)
T ss_pred HHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHh
Confidence 344567998 9999999999999999999999999999999998755433 346789999999999999987
Q ss_pred HHHHhcC----CeEEEecccc------cCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHH
Q 002357 138 ELHQEFK----DVGLMTGDVT------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESI 207 (931)
Q Consensus 138 ~l~~~~~----~vg~~tGd~~------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii 207 (931)
+.+++-- .+.+..|+.. +..+.+|+++||++|.++.+.+...+..+.|+|+||||+|+|++|.+.+..++
T Consensus 313 e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkil 392 (629)
T KOG0336|consen 313 EVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKIL 392 (629)
T ss_pred HHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHh
Confidence 7766532 3444444332 34578999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHH
Q 002357 208 IFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTF 287 (931)
Q Consensus 208 ~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 287 (931)
.-..++.|+++.|||.|.... .....+.+.|+.++..+...+.... ..+..++..+..++
T Consensus 393 ldiRPDRqtvmTSATWP~~Vr--rLa~sY~Kep~~v~vGsLdL~a~~s------VkQ~i~v~~d~~k~------------ 452 (629)
T KOG0336|consen 393 LDIRPDRQTVMTSATWPEGVR--RLAQSYLKEPMIVYVGSLDLVAVKS------VKQNIIVTTDSEKL------------ 452 (629)
T ss_pred hhcCCcceeeeecccCchHHH--HHHHHhhhCceEEEecccceeeeee------eeeeEEecccHHHH------------
Confidence 999999999999999997653 4445555677777766544333211 11222222222111
Q ss_pred HhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHH--cCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHH
Q 002357 288 LKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQ 365 (931)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~ 365 (931)
.++..+.+ ....++||||.++..++.+...|.-.|+.+
T Consensus 453 -------------------------------~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~--------- 492 (629)
T KOG0336|consen 453 -------------------------------EIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISS--------- 492 (629)
T ss_pred -------------------------------HHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccch---------
Confidence 12222221 134689999999999999888877666653
Q ss_pred HHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecce
Q 002357 366 VFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVK 445 (931)
Q Consensus 366 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~ 445 (931)
..+||+-.+.+|+..++.|++|.++|||||+++++|+|+|++++|+
T Consensus 493 ------------------------------q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~---- 538 (629)
T KOG0336|consen 493 ------------------------------QSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVY---- 538 (629)
T ss_pred ------------------------------hhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceee----
Confidence 4689999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhh
Q 002357 446 KWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMV 495 (931)
Q Consensus 446 ~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~ 495 (931)
+||. |.+.++|+||+||+||+|+.|.++.++...+..-...+.+++
T Consensus 539 NyDF----P~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~IL 584 (629)
T KOG0336|consen 539 NYDF----PRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQIL 584 (629)
T ss_pred ccCC----CccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHH
Confidence 9999 999999999999999999987777766655543333333333
No 38
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-41 Score=371.65 Aligned_cols=335 Identities=20% Similarity=0.278 Sum_probs=254.8
Q ss_pred ccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC-------------CCEEEEEcCchhhHHHHH
Q 002357 71 KTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD-------------KQRVIYTSPLKALSNQKY 136 (931)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~-------------~~rvl~l~P~kaL~~Q~~ 136 (931)
+.-+|. |+|+|+.+|+.+..|++++++|+||||||.+|++|++..+.. .+++++++||++|+.|+|
T Consensus 90 ~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ 169 (482)
T KOG0335|consen 90 KRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIY 169 (482)
T ss_pred ccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHH
Confidence 345676 999999999999999999999999999999999999987732 268999999999999999
Q ss_pred HHHHHhcC----CeEEEeccccc-------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCC-CCchHHHH
Q 002357 137 RELHQEFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD-RERGVVWE 204 (931)
Q Consensus 137 ~~l~~~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~-~~~g~~~~ 204 (931)
.+.+++.. .....+|+.++ ..+++|+|+||++|.+++.++...++++.++|+||||+|+| .+|++.+.
T Consensus 170 nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir 249 (482)
T KOG0335|consen 170 NEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIR 249 (482)
T ss_pred HHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHH
Confidence 99999865 55667777553 34799999999999999999999999999999999999999 99999999
Q ss_pred HHHHhcC----CCceEEEeccCCCChHHHHHHHHhhcCC-CeEEEecC--CCCCcceeeeeccCCCceeEeeCccchhch
Q 002357 205 ESIIFLP----PAIKMVFLSATMSNATQFAEWICHLHKQ-PCHVVYTD--FRPTPLQHYVFPVGGSGLYLVVDEKEQFRE 277 (931)
Q Consensus 205 ~ii~~l~----~~~q~v~lSAT~~n~~e~~~~l~~~~~~-~~~v~~~~--~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~ 277 (931)
.++..+. ...|.++||||.|...+ .....+..+ .+.+-... ..+..+.+-+ . .+.+.
T Consensus 250 ~iv~~~~~~~~~~~qt~mFSAtfp~~iq--~l~~~fl~~~yi~laV~rvg~~~~ni~q~i--------~-~V~~~----- 313 (482)
T KOG0335|consen 250 KIVEQLGMPPKNNRQTLLFSATFPKEIQ--RLAADFLKDNYIFLAVGRVGSTSENITQKI--------L-FVNEM----- 313 (482)
T ss_pred HHhcccCCCCccceeEEEEeccCChhhh--hhHHHHhhccceEEEEeeeccccccceeEe--------e-eecch-----
Confidence 9998764 37899999999985543 222222222 22221111 1111111111 1 11111
Q ss_pred hhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcC---------CCcEEEEecCHHHHHHHHHH
Q 002357 278 DNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERK---------FQPVIVFSFSRRECEQHAMS 348 (931)
Q Consensus 278 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~IVF~~sr~~~~~la~~ 348 (931)
.+..+|++.+.... ...++|||.+++.|..++..
T Consensus 314 -------------------------------------~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~ 356 (482)
T KOG0335|consen 314 -------------------------------------EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAF 356 (482)
T ss_pred -------------------------------------hhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHH
Confidence 11122222222111 23799999999999999999
Q ss_pred hccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchh
Q 002357 349 MSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETF 428 (931)
Q Consensus 349 L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~l 428 (931)
|...++.. ..+||..++.+|+..+..|++|.+.+||||+++
T Consensus 357 l~~~~~~~---------------------------------------~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~Va 397 (482)
T KOG0335|consen 357 LSSNGYPA---------------------------------------KSIHGDRTQIEREQALNDFRNGKAPVLVATNVA 397 (482)
T ss_pred HhcCCCCc---------------------------------------eeecchhhhhHHHHHHHHhhcCCcceEEEehhh
Confidence 99888774 568999999999999999999999999999999
Q ss_pred hcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc--cCHHHHHhhhhcc-CCChHHH
Q 002357 429 AMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ--MEMNTLKDMVLEG-QFTAEHV 505 (931)
Q Consensus 429 a~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~--~~~~~l~~l~~~~-~~~~e~~ 505 (931)
+||+|+|++++|| +||. |.+..+|+||+||+||.|..| .++.++++. .-.+.+.+++... ..-|++|
T Consensus 398 aRGlDi~~V~hVI----nyDm----P~d~d~YvHRIGRTGR~Gn~G--~atsf~n~~~~~i~~~L~~~l~ea~q~vP~wl 467 (482)
T KOG0335|consen 398 ARGLDIPNVKHVI----NYDM----PADIDDYVHRIGRTGRVGNGG--RATSFFNEKNQNIAKALVEILTEANQEVPQWL 467 (482)
T ss_pred hcCCCCCCCceeE----Eeec----CcchhhHHHhccccccCCCCc--eeEEEeccccchhHHHHHHHHHHhcccCcHHH
Confidence 9999999999999 8998 889999999999999999964 455555432 1234455555443 3445555
Q ss_pred HH
Q 002357 506 IK 507 (931)
Q Consensus 506 l~ 507 (931)
-+
T Consensus 468 ~~ 469 (482)
T KOG0335|consen 468 SE 469 (482)
T ss_pred Hh
Confidence 44
No 39
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=7.7e-41 Score=391.84 Aligned_cols=381 Identities=24% Similarity=0.337 Sum_probs=276.6
Q ss_pred CchhhhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC--------CCEEEEEcCchhhHHHH
Q 002357 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD--------KQRVIYTSPLKALSNQK 135 (931)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~--------~~rvl~l~P~kaL~~Q~ 135 (931)
....+... |. |||.|.+||+.+.+|+|+||+||||||||++|.+|++..+.. +..+||++|.|||.+++
T Consensus 12 v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di 89 (814)
T COG1201 12 VREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDI 89 (814)
T ss_pred HHHHHHHh--cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHH
Confidence 34444555 54 999999999999999999999999999999999999988732 25799999999999999
Q ss_pred HHHHHHhcC----CeEEEeccccc-------CCCCCeeEecHHHHHHHHhcC--ccccCcccEEEEeccccCCCCCchHH
Q 002357 136 YRELHQEFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRG--SEVLKEVAWVIFDEIHYMKDRERGVV 202 (931)
Q Consensus 136 ~~~l~~~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~--~~~l~~l~~vViDEaH~l~~~~~g~~ 202 (931)
.+.+..... .+.+.|||++. ...++|+|+|||.|.-++... ...+.++.|||+||+|.+.+..||..
T Consensus 90 ~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~ 169 (814)
T COG1201 90 RRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQ 169 (814)
T ss_pred HHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchh
Confidence 999887654 67889999974 336899999999999887543 35689999999999999999999999
Q ss_pred HHHHHHhc---CCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhh
Q 002357 203 WEESIIFL---PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDN 279 (931)
Q Consensus 203 ~~~ii~~l---~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (931)
+.-.+..| ....|.||||||+.+..++++|+..... ++.++.......+--..+.+... . .+.
T Consensus 170 Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~-~~~Iv~~~~~k~~~i~v~~p~~~--~--------~~~--- 235 (814)
T COG1201 170 LALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGD-PCEIVDVSAAKKLEIKVISPVED--L--------IYD--- 235 (814)
T ss_pred hhhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCC-ceEEEEcccCCcceEEEEecCCc--c--------ccc---
Confidence 87665443 2389999999999999999999987643 55655443322211111111110 0 000
Q ss_pred HHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHH
Q 002357 280 FVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEE 359 (931)
Q Consensus 280 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e 359 (931)
..........+..+.+.. ..++||+|||..++.++..|.+.+.
T Consensus 236 -------------------------------~~~~~~~~~~i~~~v~~~-~ttLIF~NTR~~aE~l~~~L~~~~~----- 278 (814)
T COG1201 236 -------------------------------EELWAALYERIAELVKKH-RTTLIFTNTRSGAERLAFRLKKLGP----- 278 (814)
T ss_pred -------------------------------cchhHHHHHHHHHHHhhc-CcEEEEEeChHHHHHHHHHHHHhcC-----
Confidence 000111222333333333 3899999999999999999977432
Q ss_pred HHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEE
Q 002357 360 KDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTV 439 (931)
Q Consensus 360 ~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~v 439 (931)
..|.+|||+++.+.|..+|+.|++|.++++|||++++.|||+.+++.
T Consensus 279 ---------------------------------~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdl 325 (814)
T COG1201 279 ---------------------------------DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDL 325 (814)
T ss_pred ---------------------------------CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceE
Confidence 23899999999999999999999999999999999999999999999
Q ss_pred EEecceecCCCCCcccCHHHHHHhhhccCCCCC-CCceEEEEEeCCccCH----HHHHhhhhccCCChHHHHHhhHHHHH
Q 002357 440 VFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGK-DDRGICIIMVDEQMEM----NTLKDMVLEGQFTAEHVIKNSFHQFQ 514 (931)
Q Consensus 440 VI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~-~~~g~~ii~~~~~~~~----~~l~~l~~~~~~~~e~~l~~sf~~~~ 514 (931)
|| +|.. |.++..++||+||+|++.. ..+|. +++.+..+. ..+..+..|.
T Consensus 326 VI----q~~S----P~sV~r~lQRiGRsgHr~~~~Skg~--ii~~~r~dllE~~vi~~~a~~g~---------------- 379 (814)
T COG1201 326 VI----QLGS----PKSVNRFLQRIGRAGHRLGEVSKGI--IIAEDRDDLLECLVLADLALEGK---------------- 379 (814)
T ss_pred EE----EeCC----cHHHHHHhHhccccccccCCcccEE--EEecCHHHHHHHHHHHHHHHhCC----------------
Confidence 99 5555 9999999999999998753 34554 444443111 1112222222
Q ss_pred hhccchhHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHH
Q 002357 515 YEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLE 558 (931)
Q Consensus 515 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 558 (931)
...++..+..|+-+-+++..+......++.+.|+...+...+.
T Consensus 380 -le~~~i~~~~LDVLaq~ivg~~~~~~~~~~~~y~~vrraypy~ 422 (814)
T COG1201 380 -LERIKIPKNPLDVLAQQIVGMALEKVWEVEEAYRVVRRAYPYA 422 (814)
T ss_pred -cccCCCCCcchhHHHHHHHHHHhhCcCCHHHHHHHHHhccccc
Confidence 1123344456666667766666555556666666665544443
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3.1e-40 Score=392.97 Aligned_cols=320 Identities=20% Similarity=0.264 Sum_probs=240.1
Q ss_pred hhhhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCC
Q 002357 67 GEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKD 145 (931)
Q Consensus 67 ~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~ 145 (931)
..+...|||+ |+|+|.++++.+..|+++++.+|||+|||++|++|++.. ++.+||++|+++|+.|+.+.+......
T Consensus 15 ~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---~g~tlVisPl~sL~~dqv~~l~~~gi~ 91 (607)
T PRK11057 15 QVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---DGLTLVVSPLISLMKDQVDQLLANGVA 91 (607)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---CCCEEEEecHHHHHHHHHHHHHHcCCc
Confidence 4455678998 999999999999999999999999999999999987754 668999999999999999999987667
Q ss_pred eEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCc--hHHHHHH---HHh
Q 002357 146 VGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRER--GVVWEES---IIF 209 (931)
Q Consensus 146 vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~--g~~~~~i---i~~ 209 (931)
+..+.++.+. +...+++++|||++............++++||+||||++.++++ ...+..+ ...
T Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~ 171 (607)
T PRK11057 92 AACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQR 171 (607)
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHh
Confidence 7777665432 23578999999998632211122245789999999999998753 3333222 223
Q ss_pred cCCCceEEEeccCCCChH--HHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHH
Q 002357 210 LPPAIKMVFLSATMSNAT--QFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTF 287 (931)
Q Consensus 210 l~~~~q~v~lSAT~~n~~--e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 287 (931)
+ ++.+++++|||+++.. ++..+++. ..+........+|. +. +.++..
T Consensus 172 ~-p~~~~v~lTAT~~~~~~~di~~~l~l--~~~~~~~~~~~r~n-l~-----------~~v~~~---------------- 220 (607)
T PRK11057 172 F-PTLPFMALTATADDTTRQDIVRLLGL--NDPLIQISSFDRPN-IR-----------YTLVEK---------------- 220 (607)
T ss_pred C-CCCcEEEEecCCChhHHHHHHHHhCC--CCeEEEECCCCCCc-ce-----------eeeeec----------------
Confidence 3 4789999999998664 23333321 12222222212221 10 001100
Q ss_pred HhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHH
Q 002357 288 LKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVF 367 (931)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~ 367 (931)
...+..++..+....+.++||||+|++.|+.++..|.+.++.
T Consensus 221 --------------------------~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~------------ 262 (607)
T PRK11057 221 --------------------------FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGIS------------ 262 (607)
T ss_pred --------------------------cchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCC------------
Confidence 112334555555566788999999999999999999876654
Q ss_pred HHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceec
Q 002357 368 QNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKW 447 (931)
Q Consensus 368 ~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~ 447 (931)
+..+||+|++.+|+.+++.|++|.++|||||+++++|||+|++++|| +|
T Consensus 263 ---------------------------v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI----~~ 311 (607)
T PRK11057 263 ---------------------------AAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV----HF 311 (607)
T ss_pred ---------------------------EEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEE----Ee
Confidence 58999999999999999999999999999999999999999999999 78
Q ss_pred CCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhh
Q 002357 448 DGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVL 496 (931)
Q Consensus 448 d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~ 496 (931)
|. |.+..+|+||+|||||.|.+ |.+++++++. +...+++++.
T Consensus 312 d~----P~s~~~y~Qr~GRaGR~G~~--~~~ill~~~~-d~~~~~~~~~ 353 (607)
T PRK11057 312 DI----PRNIESYYQETGRAGRDGLP--AEAMLFYDPA-DMAWLRRCLE 353 (607)
T ss_pred CC----CCCHHHHHHHhhhccCCCCC--ceEEEEeCHH-HHHHHHHHHh
Confidence 88 89999999999999999975 6777877754 4445555543
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.5e-39 Score=388.75 Aligned_cols=319 Identities=20% Similarity=0.263 Sum_probs=240.9
Q ss_pred hhhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCe
Q 002357 68 EMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDV 146 (931)
Q Consensus 68 ~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~v 146 (931)
.+...|||+ |+|+|.++|+.+.+|+|+++++|||+|||++|++|++. .++.++|++|+++|+.|+++.++.....+
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~---~~g~~lVisPl~sL~~dq~~~l~~~gi~~ 80 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL---LKGLTVVISPLISLMKDQVDQLRAAGVAA 80 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHHHHHcCCcE
Confidence 355679998 99999999999999999999999999999999998764 46789999999999999999999987688
Q ss_pred EEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCC--chHHHHHH---HHhc
Q 002357 147 GLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRE--RGVVWEES---IIFL 210 (931)
Q Consensus 147 g~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~--~g~~~~~i---i~~l 210 (931)
..++|+.+. +...+|+++|||++.+..........++++||+||||++.+|+ +...+..+ ...+
T Consensus 81 ~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~ 160 (591)
T TIGR01389 81 AYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERF 160 (591)
T ss_pred EEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhC
Confidence 888887643 2467999999999865443333445689999999999999864 33333333 2234
Q ss_pred CCCceEEEeccCCCChH--HHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHH
Q 002357 211 PPAIKMVFLSATMSNAT--QFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFL 288 (931)
Q Consensus 211 ~~~~q~v~lSAT~~n~~--e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 288 (931)
| ..+++++|||.+... ++..|++.. .+..+..+..||. +. +.+...
T Consensus 161 ~-~~~vi~lTAT~~~~~~~~i~~~l~~~--~~~~~~~~~~r~n-l~-----------~~v~~~----------------- 208 (591)
T TIGR01389 161 P-QVPRIALTATADAETRQDIRELLRLA--DANEFITSFDRPN-LR-----------FSVVKK----------------- 208 (591)
T ss_pred C-CCCEEEEEeCCCHHHHHHHHHHcCCC--CCCeEecCCCCCC-cE-----------EEEEeC-----------------
Confidence 4 455999999997554 355555421 1222222222221 11 111110
Q ss_pred hhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHH
Q 002357 289 KQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQ 368 (931)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~ 368 (931)
......+...+....+.++||||+|++.|+.++..|...++.
T Consensus 209 -------------------------~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~------------- 250 (591)
T TIGR01389 209 -------------------------NNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGIS------------- 250 (591)
T ss_pred -------------------------CCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCC-------------
Confidence 011223445555445678999999999999999999876654
Q ss_pred HHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecC
Q 002357 369 NAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448 (931)
Q Consensus 369 ~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d 448 (931)
++.+||+|++.+|+.+++.|.+|.++|||||+++++|||+|++++|| +||
T Consensus 251 --------------------------~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI----~~~ 300 (591)
T TIGR01389 251 --------------------------ALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVI----HYD 300 (591)
T ss_pred --------------------------EEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEE----EcC
Confidence 57899999999999999999999999999999999999999999999 777
Q ss_pred CCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhh
Q 002357 449 GDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVL 496 (931)
Q Consensus 449 ~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~ 496 (931)
. |.+..+|+||+|||||.|.. |.+++++++. +...++.++.
T Consensus 301 ~----p~s~~~y~Q~~GRaGR~G~~--~~~il~~~~~-d~~~~~~~i~ 341 (591)
T TIGR01389 301 M----PGNLESYYQEAGRAGRDGLP--AEAILLYSPA-DIALLKRRIE 341 (591)
T ss_pred C----CCCHHHHhhhhccccCCCCC--ceEEEecCHH-HHHHHHHHHh
Confidence 7 88999999999999999975 6677777654 4444454443
No 42
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.9e-39 Score=375.58 Aligned_cols=359 Identities=28% Similarity=0.406 Sum_probs=273.4
Q ss_pred CCHHHHHHHHHHhc-CCcEEEEcCCCCCcHHHHHHHHHHHHhCC-----------CEEEEEcCchhhHHHHHHHHHHhcC
Q 002357 77 LDPFQRVSVACLER-NESVLVSAHTSAGKTAVAEYAIAMAFRDK-----------QRVIYTSPLKALSNQKYRELHQEFK 144 (931)
Q Consensus 77 l~~~Q~~ai~~l~~-g~~vlv~apTGsGKTl~~~l~i~~~l~~~-----------~rvl~l~P~kaL~~Q~~~~l~~~~~ 144 (931)
|+++|....++... ..|++++||||+|||.+|++.|++.+.++ .+++|++|.++|+..+...|.+.+.
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla 389 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLA 389 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcc
Confidence 89999999987754 47999999999999999999999988543 3799999999999999999988866
Q ss_pred ----CeEEEecccccC----CCCCeeEecHHHHHHHHhcC--ccccCcccEEEEeccccCCCCCchHHHHHHHHhc----
Q 002357 145 ----DVGLMTGDVTLS----PNASCLVMTTEILRGMLYRG--SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---- 210 (931)
Q Consensus 145 ----~vg~~tGd~~~~----~~~~IlV~Tpe~L~~~l~~~--~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---- 210 (931)
.|+-+|||.+.. ....|+|+|||..--.-.++ ....+-++++|+||+|.+.| +||++.+.+....
T Consensus 390 ~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhD-dRGpvLESIVaRt~r~s 468 (1674)
T KOG0951|consen 390 PLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHD-DRGPVLESIVARTFRRS 468 (1674)
T ss_pred ccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhccc-ccchHHHHHHHHHHHHh
Confidence 577799998754 36899999999874332221 23345789999999998866 6899999876543
Q ss_pred ---CCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHH
Q 002357 211 ---PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTF 287 (931)
Q Consensus 211 ---~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 287 (931)
...++++|||||+||..+++.|++... ...+.+..++||+|+.+-+... .+++.+. ....+
T Consensus 469 es~~e~~RlVGLSATLPNy~DV~~Fl~v~~-~glf~fd~syRpvPL~qq~Igi---------~ek~~~~------~~qam 532 (1674)
T KOG0951|consen 469 ESTEEGSRLVGLSATLPNYEDVASFLRVDP-EGLFYFDSSYRPVPLKQQYIGI---------TEKKPLK------RFQAM 532 (1674)
T ss_pred hhcccCceeeeecccCCchhhhHHHhccCc-ccccccCcccCcCCccceEecc---------ccCCchH------HHHHH
Confidence 247899999999999999999998776 4667777899999996433221 1111111 11111
Q ss_pred HhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHH
Q 002357 288 LKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVF 367 (931)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~ 367 (931)
+. ....+++ ...+..++|||+.||+.+-+.|..++...+ +++.+..+.
T Consensus 533 Ne-------------------------~~yeKVm---~~agk~qVLVFVHsRkET~ktA~aIRd~~l----e~dtls~fm 580 (1674)
T KOG0951|consen 533 NE-------------------------ACYEKVL---EHAGKNQVLVFVHSRKETAKTARAIRDKAL----EEDTLSRFM 580 (1674)
T ss_pred HH-------------------------HHHHHHH---HhCCCCcEEEEEEechHHHHHHHHHHHHHh----hhhHHHHHH
Confidence 11 0111222 233558999999999999999999976332 222233333
Q ss_pred HHHH---hhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecc
Q 002357 368 QNAV---DCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAV 444 (931)
Q Consensus 368 ~~~~---~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~ 444 (931)
.+.. +-|+. .........++++|..|+++||+||...+|+.++.+|++|.++|||+|-++|+|+|+|+.+|||.+.
T Consensus 581 re~s~s~eilrt-ea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgt 659 (1674)
T KOG0951|consen 581 REDSASREILRT-EAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGT 659 (1674)
T ss_pred hcccchhhhhhh-hhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCc
Confidence 2211 00110 0111223468899999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCc--ccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 445 KKWDGDSHR--YIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 445 ~~~d~~~~~--~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
.-||+...+ ++++.+..||.|||||.+-|+.|..++..+..
T Consensus 660 qvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~s 702 (1674)
T KOG0951|consen 660 QVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHS 702 (1674)
T ss_pred cccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCch
Confidence 999998655 57999999999999999999888888876543
No 43
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.4e-39 Score=401.98 Aligned_cols=341 Identities=24% Similarity=0.295 Sum_probs=227.0
Q ss_pred EEcCCCCCcHHHHHHHHHHHHh-------------CCCEEEEEcCchhhHHHHHHHHHHh---------------cC-Ce
Q 002357 96 VSAHTSAGKTAVAEYAIAMAFR-------------DKQRVIYTSPLKALSNQKYRELHQE---------------FK-DV 146 (931)
Q Consensus 96 v~apTGsGKTl~~~l~i~~~l~-------------~~~rvl~l~P~kaL~~Q~~~~l~~~---------------~~-~v 146 (931)
|+||||||||++|++|++..+. ++.++||++|+|||++|+++.++.. .+ .|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999998887762 2468999999999999999998641 11 68
Q ss_pred EEEecccccC-------CCCCeeEecHHHHHHHHhcC-ccccCcccEEEEeccccCCCCCchHHHHHHH----HhcCCCc
Q 002357 147 GLMTGDVTLS-------PNASCLVMTTEILRGMLYRG-SEVLKEVAWVIFDEIHYMKDRERGVVWEESI----IFLPPAI 214 (931)
Q Consensus 147 g~~tGd~~~~-------~~~~IlV~Tpe~L~~~l~~~-~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii----~~l~~~~ 214 (931)
+..+||++.+ ..++|+|+|||+|..++.+. ...++++++||+||+|.+.+..||.+++..+ ..++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 8899998642 36899999999999887543 4568999999999999999888898876555 3456789
Q ss_pred eEEEeccCCCChHHHHHHHHhhcCCCeEEEecC-CCCCcceeeeeccCC-CceeEeeCccchhchhhHHHHHHHHHhhhc
Q 002357 215 KMVFLSATMSNATQFAEWICHLHKQPCHVVYTD-FRPTPLQHYVFPVGG-SGLYLVVDEKEQFREDNFVKLQDTFLKQKI 292 (931)
Q Consensus 215 q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~-~rp~pl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 292 (931)
|+|+||||++|..++++|++. ..++.++... .++.++..++ +... ..+... ........
T Consensus 161 QrIgLSATI~n~eevA~~L~g--~~pv~Iv~~~~~r~~~l~v~v-p~~d~~~~~~~---~~~~~~~~------------- 221 (1490)
T PRK09751 161 QRIGLSATVRSASDVAAFLGG--DRPVTVVNPPAMRHPQIRIVV-PVANMDDVSSV---ASGTGEDS------------- 221 (1490)
T ss_pred eEEEEEeeCCCHHHHHHHhcC--CCCEEEECCCCCcccceEEEE-ecCchhhcccc---cccccccc-------------
Confidence 999999999999999999974 2355555432 2333333222 1110 000000 00000000
Q ss_pred CCCcCCCCCCCCccCCCCCCCCCCH-HHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHH
Q 002357 293 GGRRENGKASGRMAKGGSGSGGSDI-FKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAV 371 (931)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~ 371 (931)
...........+ ..++..+. ...++|||||||+.|+.++..|.+..-.............. .+
T Consensus 222 -------------~~~r~~~i~~~v~~~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~-~~ 285 (1490)
T PRK09751 222 -------------HAGREGSIWPYIETGILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAA-HF 285 (1490)
T ss_pred -------------chhhhhhhhHHHHHHHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhh-hh
Confidence 000000000011 12333332 34689999999999999999996532100000000000000 00
Q ss_pred hhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCC
Q 002357 372 DCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDS 451 (931)
Q Consensus 372 ~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~ 451 (931)
..++... . ..+...-...+.+|||+|++++|..+++.|++|.+++||||+++++|||||++++|| +|+.
T Consensus 286 ~~~~~~~--~---~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVI----q~gs-- 354 (1490)
T PRK09751 286 ESTSGAT--S---NRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVI----QVAT-- 354 (1490)
T ss_pred hhccccc--h---hccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEE----EeCC--
Confidence 0000000 0 000000011267899999999999999999999999999999999999999999999 6776
Q ss_pred CcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 452 HRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 452 ~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
|.+..+|+||+|||||. .++.+.+++++.+.
T Consensus 355 --P~sVas~LQRiGRAGR~-~gg~s~gli~p~~r 385 (1490)
T PRK09751 355 --PLSVASGLQRIGRAGHQ-VGGVSKGLFFPRTR 385 (1490)
T ss_pred --CCCHHHHHHHhCCCCCC-CCCccEEEEEeCcH
Confidence 99999999999999997 34566777776654
No 44
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-39 Score=338.29 Aligned_cols=330 Identities=18% Similarity=0.258 Sum_probs=260.4
Q ss_pred hhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHH---------hCCCEEEEEcCchhhHHHHHHH
Q 002357 69 MAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF---------RDKQRVIYTSPLKALSNQKYRE 138 (931)
Q Consensus 69 ~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l---------~~~~rvl~l~P~kaL~~Q~~~~ 138 (931)
.....||+ |+-+|..|||.++.|+|+++.|.||||||.+|++|+++.+ ..+..+++++|||+||.|.|..
T Consensus 33 Ai~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~v 112 (569)
T KOG0346|consen 33 AITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKV 112 (569)
T ss_pred HHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHH
Confidence 34467998 9999999999999999999999999999999999999877 2467899999999999999998
Q ss_pred HHHhcC------CeEEEecccc-------cCCCCCeeEecHHHHHHHHhcCc-cccCcccEEEEeccccCCCCCchHHHH
Q 002357 139 LHQEFK------DVGLMTGDVT-------LSPNASCLVMTTEILRGMLYRGS-EVLKEVAWVIFDEIHYMKDRERGVVWE 204 (931)
Q Consensus 139 l~~~~~------~vg~~tGd~~-------~~~~~~IlV~Tpe~L~~~l~~~~-~~l~~l~~vViDEaH~l~~~~~g~~~~ 204 (931)
+.++.. .+.-++.+.+ +...++|+|+||..+..++..+. ..+..++++|+||||.+...++...+.
T Consensus 113 iekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk 192 (569)
T KOG0346|consen 113 IEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLK 192 (569)
T ss_pred HHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHH
Confidence 887643 1112222221 23468999999999999998887 678899999999999999999999999
Q ss_pred HHHHhcCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCC-C--CcceeeeeccCCCceeEeeCccchhchhhHH
Q 002357 205 ESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFR-P--TPLQHYVFPVGGSGLYLVVDEKEQFREDNFV 281 (931)
Q Consensus 205 ~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~r-p--~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (931)
.+...+|+..|.++||||+++..+ ..-..+..+|+.+-.++.. | ..+.+|. +.+.+..+|.
T Consensus 193 ~l~~~LPr~~Q~~LmSATl~dDv~--~LKkL~l~nPviLkl~e~el~~~dqL~Qy~---------v~cse~DKfl----- 256 (569)
T KOG0346|consen 193 KLRSHLPRIYQCFLMSATLSDDVQ--ALKKLFLHNPVILKLTEGELPNPDQLTQYQ---------VKCSEEDKFL----- 256 (569)
T ss_pred HHHHhCCchhhheeehhhhhhHHH--HHHHHhccCCeEEEeccccCCCcccceEEE---------EEeccchhHH-----
Confidence 999999999999999999986654 4444455667766554432 2 2233333 2333222221
Q ss_pred HHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHH
Q 002357 282 KLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKD 361 (931)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~ 361 (931)
.+..+++.- .-.++.|||+|+...|..+--.|...|+.+
T Consensus 257 ----------------------------------llyallKL~--LI~gKsliFVNtIdr~YrLkLfLeqFGiks----- 295 (569)
T KOG0346|consen 257 ----------------------------------LLYALLKLR--LIRGKSLIFVNTIDRCYRLKLFLEQFGIKS----- 295 (569)
T ss_pred ----------------------------------HHHHHHHHH--HhcCceEEEEechhhhHHHHHHHHHhCcHh-----
Confidence 111222211 123689999999999999999999888764
Q ss_pred HHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecc---------------
Q 002357 362 TVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATE--------------- 426 (931)
Q Consensus 362 ~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~--------------- 426 (931)
+++.|.|+...|.-++++|+.|..+++||||
T Consensus 296 ----------------------------------ciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk 341 (569)
T KOG0346|consen 296 ----------------------------------CILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGK 341 (569)
T ss_pred ----------------------------------hhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcccccc
Confidence 6889999999999999999999999999999
Q ss_pred --------------------hhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCcc
Q 002357 427 --------------------TFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQM 486 (931)
Q Consensus 427 --------------------~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~ 486 (931)
-.+||||+..+..|+ +||. |.++..|+||+||++|+|+.|.+.+|+.+.+..
T Consensus 342 ~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~Vl----NFD~----P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 342 SDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVL----NFDF----PETVTSYIHRVGRTARGNNKGTALSFVSPKEEF 413 (569)
T ss_pred ccccCCCCccccccccCchhchhccccchheeeee----ecCC----CCchHHHHHhccccccCCCCCceEEEecchHHh
Confidence 168999999999999 9999 999999999999999999988888887776654
Q ss_pred CHHHHHhhhhc
Q 002357 487 EMNTLKDMVLE 497 (931)
Q Consensus 487 ~~~~l~~l~~~ 497 (931)
....++.++.+
T Consensus 414 g~~~le~~~~d 424 (569)
T KOG0346|consen 414 GKESLESILKD 424 (569)
T ss_pred hhhHHHHHHhh
Confidence 44455554443
No 45
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-40 Score=353.44 Aligned_cols=353 Identities=19% Similarity=0.224 Sum_probs=249.7
Q ss_pred CCchhhhccCCCC-CCHHHHHHHHHHhcC-CcEEEEcCCCCCcHHHHHHHHHHHH--------------hCCCE--EEEE
Q 002357 64 VYNGEMAKTYSFE-LDPFQRVSVACLERN-ESVLVSAHTSAGKTAVAEYAIAMAF--------------RDKQR--VIYT 125 (931)
Q Consensus 64 ~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g-~~vlv~apTGsGKTl~~~l~i~~~l--------------~~~~r--vl~l 125 (931)
...-......||. |+++|...+|++.+| .+++..|.||||||++|.+||+..+ ..+.+ .||+
T Consensus 190 ~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~ 269 (731)
T KOG0347|consen 190 MEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVV 269 (731)
T ss_pred HHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEe
Confidence 3444555678998 999999999999888 8999999999999999999999844 12344 9999
Q ss_pred cCchhhHHHHHHHHHHhcC----CeEEEeccccc-------CCCCCeeEecHHHHHHHHhcCcc---ccCcccEEEEecc
Q 002357 126 SPLKALSNQKYRELHQEFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSE---VLKEVAWVIFDEI 191 (931)
Q Consensus 126 ~P~kaL~~Q~~~~l~~~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~---~l~~l~~vViDEa 191 (931)
+|||+|+.|+...+..... .+..++||... +..++|+|+||++|+.++..+.. .++++.++|+||+
T Consensus 270 tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEa 349 (731)
T KOG0347|consen 270 TPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEA 349 (731)
T ss_pred cChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccH
Confidence 9999999999999998876 56668899863 55799999999999999976543 4678999999999
Q ss_pred ccCCCCCchHHHHHHHHhcC-----CCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCcee
Q 002357 192 HYMKDRERGVVWEESIIFLP-----PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLY 266 (931)
Q Consensus 192 H~l~~~~~g~~~~~ii~~l~-----~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~ 266 (931)
|+|...++-..+..++..+. ...|.+.||||+.-... .-+....+.... ......++++.+-..+..+-.
T Consensus 350 DRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~--~~~~~~~k~~~k---~~~~~~kiq~Lmk~ig~~~kp 424 (731)
T KOG0347|consen 350 DRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQ--QPLSSSRKKKDK---EDELNAKIQHLMKKIGFRGKP 424 (731)
T ss_pred HHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhc--ChhHHhhhccch---hhhhhHHHHHHHHHhCccCCC
Confidence 99999988888888888775 46799999999862221 001100000000 000001111111111111110
Q ss_pred EeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHH
Q 002357 267 LVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHA 346 (931)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la 346 (931)
.++|-.... .....+......++. ....-.++.+ | ..-++++|||||+...+..++
T Consensus 425 kiiD~t~q~------~ta~~l~Es~I~C~~--------------~eKD~ylyYf---l-~ryPGrTlVF~NsId~vKRLt 480 (731)
T KOG0347|consen 425 KIIDLTPQS------ATASTLTESLIECPP--------------LEKDLYLYYF---L-TRYPGRTLVFCNSIDCVKRLT 480 (731)
T ss_pred eeEecCcch------hHHHHHHHHhhcCCc--------------cccceeEEEE---E-eecCCceEEEechHHHHHHHH
Confidence 111110000 000001110000000 0000001111 1 123578999999999999999
Q ss_pred HHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecc
Q 002357 347 MSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATE 426 (931)
Q Consensus 347 ~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~ 426 (931)
-.|..++++. ..+|+.|.+.+|-.-++.|++..-.||+|||
T Consensus 481 ~~L~~L~i~p---------------------------------------~~LHA~M~QKqRLknLEkF~~~~~~VLiaTD 521 (731)
T KOG0347|consen 481 VLLNNLDIPP---------------------------------------LPLHASMIQKQRLKNLEKFKQSPSGVLIATD 521 (731)
T ss_pred HHHhhcCCCC---------------------------------------chhhHHHHHHHHHHhHHHHhcCCCeEEEeeh
Confidence 9999988775 4689999999999999999999999999999
Q ss_pred hhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhh
Q 002357 427 TFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMV 495 (931)
Q Consensus 427 ~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~ 495 (931)
++|||+|+|.+++|| +|.. |.+++-|+||+||+.|++.+ |+++++|.+. +...++++-
T Consensus 522 VAARGLDIp~V~HVI----HYqV----PrtseiYVHRSGRTARA~~~--Gvsvml~~P~-e~~~~~KL~ 579 (731)
T KOG0347|consen 522 VAARGLDIPGVQHVI----HYQV----PRTSEIYVHRSGRTARANSE--GVSVMLCGPQ-EVGPLKKLC 579 (731)
T ss_pred hhhccCCCCCcceEE----Eeec----CCccceeEecccccccccCC--CeEEEEeChH-HhHHHHHHH
Confidence 999999999999999 6766 99999999999999999985 8999999887 444555443
No 46
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.3e-40 Score=341.79 Aligned_cols=318 Identities=19% Similarity=0.227 Sum_probs=252.8
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHH-H----------hCCCEEEEEcCchhhHHHHHH
Q 002357 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMA-F----------RDKQRVIYTSPLKALSNQKYR 137 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~-l----------~~~~rvl~l~P~kaL~~Q~~~ 137 (931)
.+.-|.. |+|+|.+.+|.++.|++.+..|-||||||++|.+|++.. + ..|+-.|++||+|+|+.|.++
T Consensus 185 lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~ 264 (610)
T KOG0341|consen 185 LKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHD 264 (610)
T ss_pred HHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHH
Confidence 3334554 999999999999999999999999999999999987653 2 357889999999999999998
Q ss_pred HHHHhcC----------CeEEEeccccc-------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCch
Q 002357 138 ELHQEFK----------DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERG 200 (931)
Q Consensus 138 ~l~~~~~----------~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g 200 (931)
-+..++. +.++..|++++ ..+.+|+|+||++|.+||.+....++-..|+.+||||+|.|.+|.
T Consensus 265 iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFE 344 (610)
T KOG0341|consen 265 IIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFE 344 (610)
T ss_pred HHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccch
Confidence 8877754 45677888875 457899999999999999998888889999999999999999999
Q ss_pred HHHHHHHHhcCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhH
Q 002357 201 VVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNF 280 (931)
Q Consensus 201 ~~~~~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (931)
..+..++..+....|.++||||+|...+ .|.....-.|+.+-+...-... +. .
T Consensus 345 ddir~iF~~FK~QRQTLLFSATMP~KIQ--~FAkSALVKPvtvNVGRAGAAs------------ld-------------V 397 (610)
T KOG0341|consen 345 DDIRTIFSFFKGQRQTLLFSATMPKKIQ--NFAKSALVKPVTVNVGRAGAAS------------LD-------------V 397 (610)
T ss_pred hhHHHHHHHHhhhhheeeeeccccHHHH--HHHHhhcccceEEecccccccc------------hh-------------H
Confidence 9999999999999999999999996654 3333333334443322111000 00 0
Q ss_pred HHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHH
Q 002357 281 VKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEK 360 (931)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~ 360 (931)
...+..++ ...++..+++.+.+. ..|++|||..+..++.+.++|--.|..
T Consensus 398 iQevEyVk------------------------qEaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKGVE----- 447 (610)
T KOG0341|consen 398 IQEVEYVK------------------------QEAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKGVE----- 447 (610)
T ss_pred HHHHHHHH------------------------hhhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHccce-----
Confidence 01111111 133556677777654 478999999999999999998544433
Q ss_pred HHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEE
Q 002357 361 DTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440 (931)
Q Consensus 361 ~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vV 440 (931)
+..+|||-.+++|...++.|+.|+.+|||||++++.|+|+|++.+|
T Consensus 448 ----------------------------------avaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHV 493 (610)
T KOG0341|consen 448 ----------------------------------AVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHV 493 (610)
T ss_pred ----------------------------------eEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhh
Confidence 4678999999999999999999999999999999999999999999
Q ss_pred EecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCH
Q 002357 441 FTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEM 488 (931)
Q Consensus 441 I~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~ 488 (931)
| +||. |-..+.|+||+||+||.|+. |++-.+.+...+.
T Consensus 494 I----NyDM----P~eIENYVHRIGRTGRsg~~--GiATTfINK~~~e 531 (610)
T KOG0341|consen 494 I----NYDM----PEEIENYVHRIGRTGRSGKT--GIATTFINKNQEE 531 (610)
T ss_pred c----cCCC----hHHHHHHHHHhcccCCCCCc--ceeeeeecccchH
Confidence 9 9999 99999999999999999986 5555555555443
No 47
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-38 Score=340.71 Aligned_cols=330 Identities=19% Similarity=0.272 Sum_probs=231.5
Q ss_pred cCCCC-CCHHHHHHHHHHh---------cCCcEEEEcCCCCCcHHHHHHHHHHHHhCC----CEEEEEcCchhhHHHHHH
Q 002357 72 TYSFE-LDPFQRVSVACLE---------RNESVLVSAHTSAGKTAVAEYAIAMAFRDK----QRVIYTSPLKALSNQKYR 137 (931)
Q Consensus 72 ~~~f~-l~~~Q~~ai~~l~---------~g~~vlv~apTGsGKTl~~~l~i~~~l~~~----~rvl~l~P~kaL~~Q~~~ 137 (931)
..... +.|+|...++.+. +++|++|.||||||||++|.+||.+.+... -|++|++||++|+.|+++
T Consensus 154 k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~ 233 (620)
T KOG0350|consen 154 KMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYD 233 (620)
T ss_pred HhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHH
Confidence 34444 8999999999872 368999999999999999999999998543 589999999999999999
Q ss_pred HHHHhcCCe----EEEecccccCC------------CCCeeEecHHHHHHHHhc-CccccCcccEEEEeccccCCCCCch
Q 002357 138 ELHQEFKDV----GLMTGDVTLSP------------NASCLVMTTEILRGMLYR-GSEVLKEVAWVIFDEIHYMKDRERG 200 (931)
Q Consensus 138 ~l~~~~~~v----g~~tGd~~~~~------------~~~IlV~Tpe~L~~~l~~-~~~~l~~l~~vViDEaH~l~~~~~g 200 (931)
.|..+...+ +.++|..++.. ..+|+|+||++|.+++.. .+..++++.++|+||||+|++..|.
T Consensus 234 ~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ 313 (620)
T KOG0350|consen 234 TFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQ 313 (620)
T ss_pred HHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHH
Confidence 999998854 44556554321 259999999999999984 4567899999999999999987666
Q ss_pred HHHHHHHHhcC----------------------------------CCceEEEeccCCCChH-HHHHHHHhhcCCCeEEEe
Q 002357 201 VVWEESIIFLP----------------------------------PAIKMVFLSATMSNAT-QFAEWICHLHKQPCHVVY 245 (931)
Q Consensus 201 ~~~~~ii~~l~----------------------------------~~~q~v~lSAT~~n~~-e~~~~l~~~~~~~~~v~~ 245 (931)
.....+..++. ++.+.+.+|||++..- .+.++- ...|-....
T Consensus 314 ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~---l~~Prl~~v 390 (620)
T KOG0350|consen 314 EWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLT---LHIPRLFHV 390 (620)
T ss_pred HHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhh---cCCCceEEe
Confidence 55444443321 2233556666654222 122111 111111000
Q ss_pred cCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHH
Q 002357 246 TDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIM 325 (931)
Q Consensus 246 ~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 325 (931)
.. | -.-.|..|......+++.+. ..+...+...+.
T Consensus 391 ~~--~-~~~ryslp~~l~~~~vv~~~------------------------------------------~~kpl~~~~lI~ 425 (620)
T KOG0350|consen 391 SK--P-LIGRYSLPSSLSHRLVVTEP------------------------------------------KFKPLAVYALIT 425 (620)
T ss_pred ec--c-cceeeecChhhhhceeeccc------------------------------------------ccchHhHHHHHH
Confidence 00 0 00011111111111111111 112234455555
Q ss_pred HcCCCcEEEEecCHHHHHHHHHHhc-cCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCH
Q 002357 326 ERKFQPVIVFSFSRRECEQHAMSMS-KLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLP 404 (931)
Q Consensus 326 ~~~~~~~IVF~~sr~~~~~la~~L~-~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~ 404 (931)
..+..++|+|++|...+..++..|. ..+-.. ..+..+.|++..
T Consensus 426 ~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~------------------------------------~~~s~~t~~l~~ 469 (620)
T KOG0350|consen 426 SNKLNRTLCFVNSVSSANRLAHVLKVEFCSDN------------------------------------FKVSEFTGQLNG 469 (620)
T ss_pred HhhcceEEEEecchHHHHHHHHHHHHHhcccc------------------------------------chhhhhhhhhhH
Confidence 6677899999999999999998886 222111 113457899999
Q ss_pred HHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCC
Q 002357 405 VIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDE 484 (931)
Q Consensus 405 ~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~ 484 (931)
..|...++.|..|.++||||||+++||||+.++++|| +||+ |.+...|+||+||++|+|++ |.+|.+.+.
T Consensus 470 k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VI----NYd~----P~~~ktyVHR~GRTARAgq~--G~a~tll~~ 539 (620)
T KOG0350|consen 470 KRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVI----NYDP----PASDKTYVHRAGRTARAGQD--GYAITLLDK 539 (620)
T ss_pred HHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEe----ecCC----CchhhHHHHhhcccccccCC--ceEEEeecc
Confidence 9999999999999999999999999999999999999 8999 99999999999999999997 666666655
Q ss_pred ccCHHHHHhhhh
Q 002357 485 QMEMNTLKDMVL 496 (931)
Q Consensus 485 ~~~~~~l~~l~~ 496 (931)
. +.....+++.
T Consensus 540 ~-~~r~F~klL~ 550 (620)
T KOG0350|consen 540 H-EKRLFSKLLK 550 (620)
T ss_pred c-cchHHHHHHH
Confidence 4 4444444443
No 48
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-38 Score=326.77 Aligned_cols=326 Identities=18% Similarity=0.224 Sum_probs=248.6
Q ss_pred CCCC-CCHHHHHHHHHHhc--CCcEEEEcCCCCCcHHHHHHHHHHHHhC---CCEEEEEcCchhhHHHHHHHHHHhcCCe
Q 002357 73 YSFE-LDPFQRVSVACLER--NESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYRELHQEFKDV 146 (931)
Q Consensus 73 ~~f~-l~~~Q~~ai~~l~~--g~~vlv~apTGsGKTl~~~l~i~~~l~~---~~rvl~l~P~kaL~~Q~~~~l~~~~~~v 146 (931)
++|+ |+.+|..|+|.++. .+|++.+++.|+|||.+|.++++..... .+.++.++|+++|+.|.-+.+.+.+...
T Consensus 108 M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~ 187 (477)
T KOG0332|consen 108 MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFT 187 (477)
T ss_pred hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCce
Confidence 6888 99999999999854 5899999999999999999999988754 4678999999999999999998887633
Q ss_pred EE----EecccccCC----CCCeeEecHHHHHHHHhc-CccccCcccEEEEeccccCCCC-CchHHHHHHHHhcCCCceE
Q 002357 147 GL----MTGDVTLSP----NASCLVMTTEILRGMLYR-GSEVLKEVAWVIFDEIHYMKDR-ERGVVWEESIIFLPPAIKM 216 (931)
Q Consensus 147 g~----~tGd~~~~~----~~~IlV~Tpe~L~~~l~~-~~~~l~~l~~vViDEaH~l~~~-~~g~~~~~ii~~l~~~~q~ 216 (931)
++ ..-|..... ..+|+|+||+.+.+++.+ .-..+..+..+|+|||+.|.+. +++..-..+...+|++.|+
T Consensus 188 ~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~Ql 267 (477)
T KOG0332|consen 188 ELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQL 267 (477)
T ss_pred eeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceE
Confidence 22 222222222 368999999999998876 5556789999999999988754 5677777888899999999
Q ss_pred EEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCc
Q 002357 217 VFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRR 296 (931)
Q Consensus 217 v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 296 (931)
+++|||..... ..|...+..++..++..... ..+ .+..++|+.+...
T Consensus 268 lLFSATf~e~V--~~Fa~kivpn~n~i~Lk~ee-l~L------~~IkQlyv~C~~~------------------------ 314 (477)
T KOG0332|consen 268 LLFSATFVEKV--AAFALKIVPNANVIILKREE-LAL------DNIKQLYVLCACR------------------------ 314 (477)
T ss_pred EeeechhHHHH--HHHHHHhcCCCceeeeehhh-ccc------cchhhheeeccch------------------------
Confidence 99999987554 34544444443333222110 000 1123344444322
Q ss_pred CCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCc
Q 002357 297 ENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNE 376 (931)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~ 376 (931)
..+...+.+...--.-+..||||.+++.+..++..|...|+.
T Consensus 315 -----------------~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~--------------------- 356 (477)
T KOG0332|consen 315 -----------------DDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQ--------------------- 356 (477)
T ss_pred -----------------hhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCce---------------------
Confidence 122333333332234568999999999999999999987765
Q ss_pred ccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCc--c
Q 002357 377 EDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHR--Y 454 (931)
Q Consensus 377 ~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~--~ 454 (931)
|..+||.|.-.+|..+.+.|+.|..+|||+|+++|||||++.+++|| +||..... -
T Consensus 357 ------------------V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~Vv----NydlP~~~~~~ 414 (477)
T KOG0332|consen 357 ------------------VSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVV----NYDLPVKYTGE 414 (477)
T ss_pred ------------------eEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEE----ecCCccccCCC
Confidence 78999999999999999999999999999999999999999999999 66653111 2
Q ss_pred cCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHh
Q 002357 455 IGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKD 493 (931)
Q Consensus 455 ~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~ 493 (931)
.+++.|+||+||+||.|+ +|.+|-++++..++..+.+
T Consensus 415 pD~etYlHRiGRtGRFGk--kG~a~n~v~~~~s~~~mn~ 451 (477)
T KOG0332|consen 415 PDYETYLHRIGRTGRFGK--KGLAINLVDDKDSMNIMNK 451 (477)
T ss_pred CCHHHHHHHhcccccccc--cceEEEeecccCcHHHHHH
Confidence 578999999999999998 5888889888877665544
No 49
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-37 Score=330.11 Aligned_cols=311 Identities=21% Similarity=0.258 Sum_probs=258.3
Q ss_pred CCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh--------CCCEEEEEcCchhhHHHHHHHHHHhcC
Q 002357 74 SFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR--------DKQRVIYTSPLKALSNQKYRELHQEFK 144 (931)
Q Consensus 74 ~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~--------~~~rvl~l~P~kaL~~Q~~~~l~~~~~ 144 (931)
.|+ |+|+|.+++|..+.|++|+-.|.||||||.+|..+++..+. .++-.||++||++|+.|++.+.+++..
T Consensus 242 Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K 321 (731)
T KOG0339|consen 242 EYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGK 321 (731)
T ss_pred hcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhh
Confidence 455 99999999999999999999999999999999999887662 467899999999999999999988865
Q ss_pred ----CeEEEecccc-------cCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCC
Q 002357 145 ----DVGLMTGDVT-------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPA 213 (931)
Q Consensus 145 ----~vg~~tGd~~-------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~ 213 (931)
++..++|+.+ +..++.|+|+||++|.+|+..+...+.++.++||||+++|.+.+|...+..|..+..+.
T Consensus 322 ~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpd 401 (731)
T KOG0339|consen 322 AYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPD 401 (731)
T ss_pred hccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCc
Confidence 4444666654 24579999999999999999988899999999999999999999999999999999999
Q ss_pred ceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCC--cceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhh
Q 002357 214 IKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPT--PLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQK 291 (931)
Q Consensus 214 ~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~--pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 291 (931)
.|.++||||++...+ .....+..+|+.++..+.-.. .+.+ ...++
T Consensus 402 rQtllFsaTf~~kIe--~lard~L~dpVrvVqg~vgean~dITQ---------~V~V~---------------------- 448 (731)
T KOG0339|consen 402 RQTLLFSATFKKKIE--KLARDILSDPVRVVQGEVGEANEDITQ---------TVSVC---------------------- 448 (731)
T ss_pred ceEEEeeccchHHHH--HHHHHHhcCCeeEEEeehhccccchhh---------eeeec----------------------
Confidence 999999999985544 445555667777765532111 1111 11111
Q ss_pred cCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHc-CCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHH
Q 002357 292 IGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMER-KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNA 370 (931)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~ 370 (931)
.+...++..+++.|... ..+++|||+.-+..+++++..|.-.+++
T Consensus 449 -------------------~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~--------------- 494 (731)
T KOG0339|consen 449 -------------------PSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFN--------------- 494 (731)
T ss_pred -------------------cCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccce---------------
Confidence 12234566677766653 4578999999999999999999776665
Q ss_pred HhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCC
Q 002357 371 VDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGD 450 (931)
Q Consensus 371 ~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~ 450 (931)
|..+||+|.+.+|.+++..|+++...||+||+++++|+|+|....|| +||.
T Consensus 495 ------------------------v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVv----nyD~- 545 (731)
T KOG0339|consen 495 ------------------------VSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVV----NYDF- 545 (731)
T ss_pred ------------------------eeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceee----cccc-
Confidence 68899999999999999999999999999999999999999999999 8888
Q ss_pred CCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 451 SHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 451 ~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
..+.+.|+||+||+||+|.. |+++.++++.
T Consensus 546 ---ardIdththrigrtgRag~k--GvayTlvTeK 575 (731)
T KOG0339|consen 546 ---ARDIDTHTHRIGRTGRAGEK--GVAYTLVTEK 575 (731)
T ss_pred ---cchhHHHHHHhhhccccccc--ceeeEEechh
Confidence 77889999999999999985 7788877765
No 50
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=8.8e-37 Score=370.86 Aligned_cols=310 Identities=21% Similarity=0.277 Sum_probs=231.1
Q ss_pred CchhhhccCCCCCCHHHHHHHHHHhcC------CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHH
Q 002357 65 YNGEMAKTYSFELDPFQRVSVACLERN------ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRE 138 (931)
Q Consensus 65 ~~~~~~~~~~f~l~~~Q~~ai~~l~~g------~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~ 138 (931)
....+...|||+|+|.|.+||+.+.++ .+++++||||+|||.+|+.|++.++..+.+++|++||++|+.|+++.
T Consensus 440 ~~~~~~~~~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~ 519 (926)
T TIGR00580 440 WQQEFEDSFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFET 519 (926)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHH
Confidence 456777889999999999999999664 78999999999999999999999998999999999999999999999
Q ss_pred HHHhcC----CeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHH
Q 002357 139 LHQEFK----DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVW 203 (931)
Q Consensus 139 l~~~~~----~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~ 203 (931)
|++.+. .+++++|..+. +..++|+|+||..+ .....++++++||+||+|++ |...
T Consensus 520 f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrf-----gv~~ 589 (926)
T TIGR00580 520 FKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRF-----GVKQ 589 (926)
T ss_pred HHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeeccccc-----chhH
Confidence 999876 46677776542 23589999999533 23446889999999999985 4455
Q ss_pred HHHHHhcCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHH
Q 002357 204 EESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKL 283 (931)
Q Consensus 204 ~~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (931)
.+.+..++.++|+++||||+... .+...+... .++..+........|+.+++... . ....
T Consensus 590 ~~~L~~~~~~~~vL~~SATpipr-tl~~~l~g~-~d~s~I~~~p~~R~~V~t~v~~~-----------~----~~~i--- 649 (926)
T TIGR00580 590 KEKLKELRTSVDVLTLSATPIPR-TLHMSMSGI-RDLSIIATPPEDRLPVRTFVMEY-----------D----PELV--- 649 (926)
T ss_pred HHHHHhcCCCCCEEEEecCCCHH-HHHHHHhcC-CCcEEEecCCCCccceEEEEEec-----------C----HHHH---
Confidence 66677788899999999997432 222222211 12222222112122333322110 0 0000
Q ss_pred HHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHH
Q 002357 284 QDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTV 363 (931)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i 363 (931)
...+.+.+. .+++++|||++++.++.++..|.+....
T Consensus 650 ---------------------------------~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~-------- 686 (926)
T TIGR00580 650 ---------------------------------REAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPE-------- 686 (926)
T ss_pred ---------------------------------HHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCC--------
Confidence 011222222 3468999999999999999988763111
Q ss_pred HHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEec
Q 002357 364 EQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA 443 (931)
Q Consensus 364 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~ 443 (931)
..++.+||+|++.+|+.++..|++|+++|||||+++++|||+|++++||
T Consensus 687 -----------------------------~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VI-- 735 (926)
T TIGR00580 687 -----------------------------ARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTII-- 735 (926)
T ss_pred -----------------------------CeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEE--
Confidence 1278999999999999999999999999999999999999999999998
Q ss_pred ceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 444 VKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 444 ~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
.+|.. ..+..+|.||+||+||.|. .|.|++++.+.
T Consensus 736 --i~~a~---~~gls~l~Qr~GRvGR~g~--~g~aill~~~~ 770 (926)
T TIGR00580 736 --IERAD---KFGLAQLYQLRGRVGRSKK--KAYAYLLYPHQ 770 (926)
T ss_pred --EecCC---CCCHHHHHHHhcCCCCCCC--CeEEEEEECCc
Confidence 44442 1345679999999999987 58999998654
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.1e-36 Score=363.93 Aligned_cols=310 Identities=21% Similarity=0.284 Sum_probs=222.0
Q ss_pred CchhhhccCCCCCCHHHHHHHHHHhcC------CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHH
Q 002357 65 YNGEMAKTYSFELDPFQRVSVACLERN------ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRE 138 (931)
Q Consensus 65 ~~~~~~~~~~f~l~~~Q~~ai~~l~~g------~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~ 138 (931)
....+...+||+|++.|++|++.+..+ .+++++||||||||++|++|++.++..|.+++|++||++|+.|+++.
T Consensus 250 ~~~~~~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~ 329 (681)
T PRK10917 250 LLKKFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYEN 329 (681)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHH
Confidence 445677889999999999999999665 48999999999999999999999999999999999999999999999
Q ss_pred HHHhcC----CeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHH
Q 002357 139 LHQEFK----DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVW 203 (931)
Q Consensus 139 l~~~~~----~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~ 203 (931)
+++++. .+++++|+.+. +..++|+|+||+.+.. ...++++++||+||+|++.. ..
T Consensus 330 l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~-----~q 399 (681)
T PRK10917 330 LKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGV-----EQ 399 (681)
T ss_pred HHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhH-----HH
Confidence 999875 67889999863 3369999999987743 23478999999999998743 33
Q ss_pred HHHHHhcCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEec-CCCCCcceeeeeccCCCceeEeeCccchhchhhHHH
Q 002357 204 EESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYT-DFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVK 282 (931)
Q Consensus 204 ~~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~-~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (931)
...+......+++++||||+.... ++-.. .....+.++.. .....|+..++.. ... ...
T Consensus 400 r~~l~~~~~~~~iL~~SATp~prt-l~~~~--~g~~~~s~i~~~p~~r~~i~~~~~~----------~~~-------~~~ 459 (681)
T PRK10917 400 RLALREKGENPHVLVMTATPIPRT-LAMTA--YGDLDVSVIDELPPGRKPITTVVIP----------DSR-------RDE 459 (681)
T ss_pred HHHHHhcCCCCCEEEEeCCCCHHH-HHHHH--cCCCceEEEecCCCCCCCcEEEEeC----------ccc-------HHH
Confidence 334444556789999999974332 22111 11111222211 1101122221110 000 000
Q ss_pred HHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHH--------HHHHhccCCC
Q 002357 283 LQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQ--------HAMSMSKLDF 354 (931)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~--------la~~L~~~~~ 354 (931)
. +..+.+.+ ..+.+++|||+..+.++. +++.|.+.
T Consensus 460 ~---------------------------------~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~-- 502 (681)
T PRK10917 460 V---------------------------------YERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEA-- 502 (681)
T ss_pred H---------------------------------HHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHH--
Confidence 0 11111222 245789999997654432 22222211
Q ss_pred CChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCC
Q 002357 355 NTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNM 434 (931)
Q Consensus 355 ~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdi 434 (931)
+. ...++.+||+|++.+|+.+++.|++|+++|||||+++++|||+
T Consensus 503 -------------------~~----------------~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDi 547 (681)
T PRK10917 503 -------------------FP----------------ELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDV 547 (681)
T ss_pred -------------------CC----------------CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCccc
Confidence 00 1248999999999999999999999999999999999999999
Q ss_pred CCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 435 PAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 435 p~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
|++++|| .||.. ......|.||+||+||.|. .|.|++++++.
T Consensus 548 p~v~~VI----i~~~~---r~gls~lhQ~~GRvGR~g~--~g~~ill~~~~ 589 (681)
T PRK10917 548 PNATVMV----IENAE---RFGLAQLHQLRGRVGRGAA--QSYCVLLYKDP 589 (681)
T ss_pred CCCcEEE----EeCCC---CCCHHHHHHHhhcccCCCC--ceEEEEEECCC
Confidence 9999999 56652 1346789999999999987 59999998643
No 52
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-37 Score=324.06 Aligned_cols=334 Identities=22% Similarity=0.334 Sum_probs=265.1
Q ss_pred CCCCChhhhccccCCCCCchhhhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC---CCEEE
Q 002357 48 YALTKDEAIHGTFANPVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVI 123 (931)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~---~~rvl 123 (931)
...++++++++.|. |||+ |+.+|++||..+.+|.|+..++++|+|||.+|..+++..+.. ...++
T Consensus 30 dm~L~e~LLrgiy~-----------yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qal 98 (397)
T KOG0327|consen 30 DMNLKESLLRGIYA-----------YGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQAL 98 (397)
T ss_pred hcCCCHHHHhHHHh-----------hccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHH
Confidence 45677788887776 8998 999999999999999999999999999999999999888743 46799
Q ss_pred EEcCchhhHHHHHHHHHHhcC----CeEEEecccccC--------CCCCeeEecHHHHHHHHhcCccccCcccEEEEecc
Q 002357 124 YTSPLKALSNQKYRELHQEFK----DVGLMTGDVTLS--------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEI 191 (931)
Q Consensus 124 ~l~P~kaL~~Q~~~~l~~~~~----~vg~~tGd~~~~--------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEa 191 (931)
+++|+++|+.|.......++. .+..+.|+.+.. ..++|+|+||+++..|+.++....+.++++|+||+
T Consensus 99 ilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEa 178 (397)
T KOG0327|consen 99 ILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEA 178 (397)
T ss_pred HhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecch
Confidence 999999999999988888876 344455655533 23799999999999999999888888999999999
Q ss_pred ccCCCCCchHHHHHHHHhcCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCc
Q 002357 192 HYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDE 271 (931)
Q Consensus 192 H~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~ 271 (931)
+.|...+|...++.+..++|.++|++++|||+|.... ..-..+...|+.+.......+ ++ +.+++|.-+..
T Consensus 179 DEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl--~vt~~f~~~pv~i~vkk~~lt-l~------gikq~~i~v~k 249 (397)
T KOG0327|consen 179 DEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVL--EVTKKFMREPVRILVKKDELT-LE------GIKQFYINVEK 249 (397)
T ss_pred HhhhccchHHHHHHHHHHcCcchhheeecccCcHHHH--HHHHHhccCceEEEecchhhh-hh------heeeeeeeccc
Confidence 9999999999999999999999999999999985432 222333444555544322211 11 11112211111
Q ss_pred cchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhcc
Q 002357 272 KEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSK 351 (931)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~ 351 (931)
. .++.-+..... +...++||||+++.++.+...|..
T Consensus 250 ~------------------------------------------~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~ 285 (397)
T KOG0327|consen 250 E------------------------------------------EKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRA 285 (397)
T ss_pred c------------------------------------------ccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhh
Confidence 1 12222333333 556899999999999999999977
Q ss_pred CCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcc
Q 002357 352 LDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMG 431 (931)
Q Consensus 352 ~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~G 431 (931)
.+++ +.++||.|.+.+|+.+...|++|..+|||.|+.+|+|
T Consensus 286 ~~~~---------------------------------------~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~arg 326 (397)
T KOG0327|consen 286 HGFT---------------------------------------VSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARG 326 (397)
T ss_pred CCce---------------------------------------EEEeecccchhhhhHHHHHhhcCCceEEeeccccccc
Confidence 7665 5789999999999999999999999999999999999
Q ss_pred cCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhh
Q 002357 432 LNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMV 495 (931)
Q Consensus 432 Idip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~ 495 (931)
+|+..++.|| +||. |.....|+||+||+||.|.. |.++.++.+. +...++++-
T Consensus 327 idv~~~slvi----nydl----P~~~~~yihR~gr~gr~grk--g~~in~v~~~-d~~~lk~ie 379 (397)
T KOG0327|consen 327 IDVQQVSLVV----NYDL----PARKENYIHRIGRAGRFGRK--GVAINFVTEE-DVRDLKDIE 379 (397)
T ss_pred cchhhcceee----eecc----ccchhhhhhhcccccccCCC--ceeeeeehHh-hHHHHHhHH
Confidence 9999999999 8888 88999999999999999995 7777777655 455555544
No 53
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.8e-37 Score=335.39 Aligned_cols=312 Identities=22% Similarity=0.326 Sum_probs=249.2
Q ss_pred cCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC--------CCEEEEEcCchhhHHHHHHHHHHh
Q 002357 72 TYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD--------KQRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 72 ~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~--------~~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
..+|. |+|.|.+|+|.+..+++++.+||||+|||++|.+|++..+.. |-+++|++|+++|+.|.|+++.++
T Consensus 153 ~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~ 232 (593)
T KOG0344|consen 153 ELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKY 232 (593)
T ss_pred hCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhc
Confidence 45887 999999999999999999999999999999999999988742 468999999999999999999998
Q ss_pred c--CCeEE----Eecccc--------cCCCCCeeEecHHHHHHHHhcCc--cccCcccEEEEeccccCCCC-CchHHHHH
Q 002357 143 F--KDVGL----MTGDVT--------LSPNASCLVMTTEILRGMLYRGS--EVLKEVAWVIFDEIHYMKDR-ERGVVWEE 205 (931)
Q Consensus 143 ~--~~vg~----~tGd~~--------~~~~~~IlV~Tpe~L~~~l~~~~--~~l~~l~~vViDEaH~l~~~-~~g~~~~~ 205 (931)
. ...+. +..... ....++|+|.||-++...+..+. ..+..+.|+|+||+|.+.+. .|..+...
T Consensus 233 ~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~ 312 (593)
T KOG0344|consen 233 SIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLAD 312 (593)
T ss_pred CCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHH
Confidence 7 32222 221111 01247999999999998887765 56889999999999999988 77777888
Q ss_pred HHHhcC-CCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCC--cc-eeeeeccCCCceeEeeCccchhchhhHH
Q 002357 206 SIIFLP-PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPT--PL-QHYVFPVGGSGLYLVVDEKEQFREDNFV 281 (931)
Q Consensus 206 ii~~l~-~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~--pl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (931)
++..+. +++.+-+||||.+...+ +|..........+++...... .+ +..+|.
T Consensus 313 I~sac~s~~i~~a~FSat~~~~VE--E~~~~i~~~~~~vivg~~~sa~~~V~QelvF~---------------------- 368 (593)
T KOG0344|consen 313 IYSACQSPDIRVALFSATISVYVE--EWAELIKSDLKRVIVGLRNSANETVDQELVFC---------------------- 368 (593)
T ss_pred HHHHhcCcchhhhhhhccccHHHH--HHHHHhhccceeEEEecchhHhhhhhhhheee----------------------
Confidence 887764 68889999999886554 999888777766665432111 00 111110
Q ss_pred HHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhcc-CCCCChHHH
Q 002357 282 KLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSK-LDFNTQEEK 360 (931)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~-~~~~~~~e~ 360 (931)
.....++..+.+.+...-..|++||+.|...|..+...|.. -++
T Consensus 369 -----------------------------gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i------ 413 (593)
T KOG0344|consen 369 -----------------------------GSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNI------ 413 (593)
T ss_pred -----------------------------ecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCc------
Confidence 12233455555555555567999999999999999999852 122
Q ss_pred HHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEE
Q 002357 361 DTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440 (931)
Q Consensus 361 ~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vV 440 (931)
.|+++||..++.+|+.+.+.|+.|+++|||||+++++|||+.+++.|
T Consensus 414 ---------------------------------~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~V 460 (593)
T KOG0344|consen 414 ---------------------------------NVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLV 460 (593)
T ss_pred ---------------------------------ceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceE
Confidence 27899999999999999999999999999999999999999999999
Q ss_pred EecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 441 FTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 441 I~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
| +||. |.+..+|+||+||+||+|+. |.+|.++++.
T Consensus 461 I----nyD~----p~s~~syihrIGRtgRag~~--g~Aitfytd~ 495 (593)
T KOG0344|consen 461 I----NYDF----PQSDLSYIHRIGRTGRAGRS--GKAITFYTDQ 495 (593)
T ss_pred E----ecCC----CchhHHHHHHhhccCCCCCC--cceEEEeccc
Confidence 9 8999 88999999999999999995 7777777764
No 54
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=4.3e-36 Score=372.47 Aligned_cols=310 Identities=19% Similarity=0.243 Sum_probs=230.7
Q ss_pred CchhhhccCCCCCCHHHHHHHHHHhcC------CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHH
Q 002357 65 YNGEMAKTYSFELDPFQRVSVACLERN------ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRE 138 (931)
Q Consensus 65 ~~~~~~~~~~f~l~~~Q~~ai~~l~~g------~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~ 138 (931)
....+...|||+|++.|.+||+.+..+ .+++++||||+|||.+|+.++..++..+.+++|++||++|+.|+++.
T Consensus 589 ~~~~~~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~ 668 (1147)
T PRK10689 589 QYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDN 668 (1147)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHH
Confidence 567788899999999999999999776 89999999999999999999888888899999999999999999999
Q ss_pred HHHhcC----CeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHH
Q 002357 139 LHQEFK----DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVW 203 (931)
Q Consensus 139 l~~~~~----~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~ 203 (931)
|++.+. .+..++|..+. +..++|+|+||+.+. ....+.+++++|+||+|++ |...
T Consensus 669 f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrf-----G~~~ 738 (1147)
T PRK10689 669 FRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRF-----GVRH 738 (1147)
T ss_pred HHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhc-----chhH
Confidence 998776 45667776542 246899999997542 2334779999999999997 3334
Q ss_pred HHHHHhcCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHH
Q 002357 204 EESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKL 283 (931)
Q Consensus 204 ~~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (931)
.+.+..++.++|+++||||+..... ........++..+........++.+++... +. .
T Consensus 739 ~e~lk~l~~~~qvLl~SATpiprtl--~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~---------~~------~----- 796 (1147)
T PRK10689 739 KERIKAMRADVDILTLTATPIPRTL--NMAMSGMRDLSIIATPPARRLAVKTFVREY---------DS------L----- 796 (1147)
T ss_pred HHHHHhcCCCCcEEEEcCCCCHHHH--HHHHhhCCCcEEEecCCCCCCCceEEEEec---------Cc------H-----
Confidence 5667778889999999999754321 111111223333322222222333322110 00 0
Q ss_pred HHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHH
Q 002357 284 QDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTV 363 (931)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i 363 (931)
.....++..+. .+++++|||++++.++.++..|.+....
T Consensus 797 -------------------------------~~k~~il~el~--r~gqv~vf~n~i~~ie~la~~L~~~~p~-------- 835 (1147)
T PRK10689 797 -------------------------------VVREAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPE-------- 835 (1147)
T ss_pred -------------------------------HHHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCC--------
Confidence 00112233332 3468999999999999999998763111
Q ss_pred HHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEec
Q 002357 364 EQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA 443 (931)
Q Consensus 364 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~ 443 (931)
.+|+++||+|++.+|+.++..|++|+++|||||+++++|||+|++++||..
T Consensus 836 -----------------------------~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~ 886 (1147)
T PRK10689 836 -----------------------------ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 (1147)
T ss_pred -----------------------------CcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEe
Confidence 137899999999999999999999999999999999999999999998842
Q ss_pred ceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 444 VKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 444 ~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
. .. ..+...|+||+||+||.|. .|.|++++.+.
T Consensus 887 ~----ad---~fglaq~~Qr~GRvGR~g~--~g~a~ll~~~~ 919 (1147)
T PRK10689 887 R----AD---HFGLAQLHQLRGRVGRSHH--QAYAWLLTPHP 919 (1147)
T ss_pred c----CC---CCCHHHHHHHhhccCCCCC--ceEEEEEeCCC
Confidence 1 11 2244679999999999998 58899887553
No 55
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=3.7e-36 Score=341.29 Aligned_cols=442 Identities=27% Similarity=0.443 Sum_probs=293.1
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh--CCCEEEEEcCchhhHHHHHHHHHHhcC-------
Q 002357 74 SFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR--DKQRVIYTSPLKALSNQKYRELHQEFK------- 144 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~--~~~rvl~l~P~kaL~~Q~~~~l~~~~~------- 144 (931)
+|.|+.||.+.++...++++++++|||++|||.+..|++-..++ ...-|||++|+++|+||........|.
T Consensus 509 dF~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg 588 (1330)
T KOG0949|consen 509 DFCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRG 588 (1330)
T ss_pred ccCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccc
Confidence 59999999999999999999999999999999999999988885 467899999999999999998888874
Q ss_pred --CeEEEecccccCC-CCCeeEecHHHHHHHHhc---CccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEE
Q 002357 145 --DVGLMTGDVTLSP-NASCLVMTTEILRGMLYR---GSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVF 218 (931)
Q Consensus 145 --~vg~~tGd~~~~~-~~~IlV~Tpe~L~~~l~~---~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~ 218 (931)
-.|.+|-+.++|+ +++|+|+-||.+-++|.. ...+..++.+||+||+|++++.+-|..|++++.+.| +.+++
T Consensus 589 ~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~--CP~L~ 666 (1330)
T KOG0949|consen 589 VSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP--CPFLV 666 (1330)
T ss_pred hhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC--CCeeE
Confidence 1344666667775 799999999999998876 345678999999999999999998999999887765 66999
Q ss_pred eccCCCChHHHHHHHHhh---cCCCeEEEecCCCCCcceeeeeccCC------------------------------Cce
Q 002357 219 LSATMSNATQFAEWICHL---HKQPCHVVYTDFRPTPLQHYVFPVGG------------------------------SGL 265 (931)
Q Consensus 219 lSAT~~n~~e~~~~l~~~---~~~~~~v~~~~~rp~pl~~~~~~~~~------------------------------~~~ 265 (931)
+|||+.|+..+..|+... ...+++.+....|-..+.-+++.... ...
T Consensus 667 LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai~~~~~~~~~s~dd~~ 746 (1330)
T KOG0949|consen 667 LSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAIIVSLRELSESEDDNV 746 (1330)
T ss_pred EecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhccchhhccccCCCCce
Confidence 999999999999999833 34456665554443333322221110 000
Q ss_pred eEeeCccchhchhhHHHHH--------------------------HHHHhhhcCCCc-----------CCCC--CCCCcc
Q 002357 266 YLVVDEKEQFREDNFVKLQ--------------------------DTFLKQKIGGRR-----------ENGK--ASGRMA 306 (931)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~--------------------------~~l~~~~~~~~~-----------~~~~--~~~~~~ 306 (931)
.+-..+..........+.. ..+.+....... ..+. ......
T Consensus 747 ~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~~ki~~k~Vnkqle~~ 826 (1330)
T KOG0949|consen 747 VLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYVYKLQTKEVNKQLESV 826 (1330)
T ss_pred EeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHHHHHHHHHHHHHHhhhcChHHHHHHHHHHhhhhhhhhHhhhc
Confidence 0000000000000000000 000010000000 0000 000000
Q ss_pred CC-CCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhcc----CCCCChHHHHH-HH----------------
Q 002357 307 KG-GSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSK----LDFNTQEEKDT-VE---------------- 364 (931)
Q Consensus 307 ~~-~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~----~~~~~~~e~~~-i~---------------- 364 (931)
.. ........+..++..+.+.+..|+|+|--.|..|+.+|..+.+ .... +.+.. ..
T Consensus 827 ~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~E--e~k~k~m~k~kk~~~~a~~r~Kt~ 904 (1330)
T KOG0949|consen 827 VDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEME--EKKDKLMEKMKKEAKRARDREKTK 904 (1330)
T ss_pred ccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000122366777788888999999999999999988866532 1111 01000 00
Q ss_pred -HHHHHHHh-----hcCccc---------CCCh---------------hHHhHHHHhhccceeccCCCCHHHHHHHHHHH
Q 002357 365 -QVFQNAVD-----CLNEED---------RNLP---------------AIELMLPLLKRGIAVHHSGLLPVIKELVELLF 414 (931)
Q Consensus 365 -~~~~~~~~-----~l~~~d---------~~l~---------------~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F 414 (931)
.+....++ .+++++ +..+ ....+..++.||||+||+||....|..|+-+|
T Consensus 905 e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHaglNr~yR~~VEvLF 984 (1330)
T KOG0949|consen 905 ESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAGLNRKYRSLVEVLF 984 (1330)
T ss_pred HHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccccchHHHHHHHHHh
Confidence 01111100 011110 0000 12457788999999999999999999999999
Q ss_pred hcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhh
Q 002357 415 QEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDM 494 (931)
Q Consensus 415 ~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l 494 (931)
+.|.+.|||||+|++.|||||.++|||.++. -.++|-.|.||+|||||+|.|.-|+++.+--+. ..++++
T Consensus 985 R~g~L~VlfaT~TLsLGiNMPCrTVvF~gDs-------LQL~plny~QmaGRAGRRGFD~lGnV~FmgiP~---~kv~rL 1054 (1330)
T KOG0949|consen 985 RQGHLQVLFATETLSLGINMPCRTVVFAGDS-------LQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIPR---QKVQRL 1054 (1330)
T ss_pred hcCceEEEEEeeehhcccCCCceeEEEeccc-------cccCchhHHhhhccccccccccccceEEEeCcH---HHHHHH
Confidence 9999999999999999999999999996543 267888999999999999999999999986554 566676
Q ss_pred hhcc--------CCChHHHHHhhHHHHHhhccchhHHHHHHHHHH
Q 002357 495 VLEG--------QFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEE 531 (931)
Q Consensus 495 ~~~~--------~~~~e~~l~~sf~~~~~~~~~~~~~~~l~~l~~ 531 (931)
+... .++...++ -|.++-.....|..+..+-...+
T Consensus 1055 lts~L~diqG~~p~T~~~~l--~l~~~~s~q~~p~~e~t~~s~m~ 1097 (1330)
T KOG0949|consen 1055 LTSLLPDIQGAYPYTNTSFL--GLDLKDSLQKNPLLESTLYSGME 1097 (1330)
T ss_pred HHHhhhcccCCCcchhhHHH--HHHHHHhhhcCcchhhhhhhhcc
Confidence 6554 12222222 23333344556666665544433
No 56
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-36 Score=352.88 Aligned_cols=317 Identities=20% Similarity=0.267 Sum_probs=252.4
Q ss_pred hhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh--------CCCEEEEEcCchhhHHHHHHHH
Q 002357 69 MAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR--------DKQRVIYTSPLKALSNQKYREL 139 (931)
Q Consensus 69 ~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~--------~~~rvl~l~P~kaL~~Q~~~~l 139 (931)
-.++++|. ++|+|.+|||++..|++||..|-||||||++|.+|++.... .|+-+||++||++|+.|+++++
T Consensus 379 tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~ 458 (997)
T KOG0334|consen 379 TLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREV 458 (997)
T ss_pred HHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHH
Confidence 33778898 99999999999999999999999999999999999997762 4788999999999999999999
Q ss_pred HHhcC----CeEEEeccccc-------CCCCCeeEecHHHHHHHHhcCcc---ccCcccEEEEeccccCCCCCchHHHHH
Q 002357 140 HQEFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSE---VLKEVAWVIFDEIHYMKDRERGVVWEE 205 (931)
Q Consensus 140 ~~~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~---~l~~l~~vViDEaH~l~~~~~g~~~~~ 205 (931)
+.+.. .+...+|+..+ ..++.|+|+||++..+++..++. .++++.++|+||||+|.|.+|.+....
T Consensus 459 ~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~ 538 (997)
T KOG0334|consen 459 RKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITR 538 (997)
T ss_pred HHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccch
Confidence 88866 44556777653 34699999999999999865543 355666999999999999999999999
Q ss_pred HHHhcCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHH
Q 002357 206 SIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQD 285 (931)
Q Consensus 206 ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (931)
|+..+++..|++++|||.|...+ ..-......|+.+++....-+ .....+...++..
T Consensus 539 Ii~nlrpdrQtvlfSatfpr~m~--~la~~vl~~Pveiiv~~~svV-------~k~V~q~v~V~~~-------------- 595 (997)
T KOG0334|consen 539 ILQNLRPDRQTVLFSATFPRSME--ALARKVLKKPVEIIVGGRSVV-------CKEVTQVVRVCAI-------------- 595 (997)
T ss_pred HHhhcchhhhhhhhhhhhhHHHH--HHHHHhhcCCeeEEEccceeE-------eccceEEEEEecC--------------
Confidence 99999999999999999997743 222333335666554422111 1111122222221
Q ss_pred HHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHH-cCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHH
Q 002357 286 TFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME-RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVE 364 (931)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~ 364 (931)
...++..|+..|.. .+..++||||.+...|+.+...|.+.++++.
T Consensus 596 ---------------------------e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~------- 641 (997)
T KOG0334|consen 596 ---------------------------ENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCD------- 641 (997)
T ss_pred ---------------------------chHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchh-------
Confidence 12233344444433 2468999999999999999999999888862
Q ss_pred HHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecc
Q 002357 365 QVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAV 444 (931)
Q Consensus 365 ~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~ 444 (931)
.+|||.++.+|..+++.|++|.+++|+||+++++|+|++...+||
T Consensus 642 --------------------------------slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvv--- 686 (997)
T KOG0334|consen 642 --------------------------------SLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVV--- 686 (997)
T ss_pred --------------------------------hhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEE---
Confidence 379999999999999999999999999999999999999999999
Q ss_pred eecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCC
Q 002357 445 KKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDE 484 (931)
Q Consensus 445 ~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~ 484 (931)
+||. |-...+|+||+||+||+|..+ .++++.++
T Consensus 687 -nyd~----pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 687 -NYDF----PNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred -Eccc----chhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 8998 778888999999999999965 55555544
No 57
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=4.7e-36 Score=358.70 Aligned_cols=308 Identities=23% Similarity=0.272 Sum_probs=217.8
Q ss_pred chhhhccCCCCCCHHHHHHHHHHhcC------CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHH
Q 002357 66 NGEMAKTYSFELDPFQRVSVACLERN------ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYREL 139 (931)
Q Consensus 66 ~~~~~~~~~f~l~~~Q~~ai~~l~~g------~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l 139 (931)
...+...+||+|++.|++|++.+..+ .+.+++||||||||++|+++++..+..+.+++|++||++|+.|+++.+
T Consensus 225 ~~~~~~~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~ 304 (630)
T TIGR00643 225 LTKFLASLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSL 304 (630)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHH
Confidence 34667789999999999999998654 368999999999999999999999999999999999999999999999
Q ss_pred HHhcC----CeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHH
Q 002357 140 HQEFK----DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWE 204 (931)
Q Consensus 140 ~~~~~----~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~ 204 (931)
+++++ .+++++|+.+. +.+++|+|+||+.+.. ...++++++||+||+|++....+...
T Consensus 305 ~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~qr~~l-- 377 (630)
T TIGR00643 305 RNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVEQRKKL-- 377 (630)
T ss_pred HHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHHHHHHH--
Confidence 99875 67889998753 3367999999997753 23478999999999998764433222
Q ss_pred HHHHhcC--CCceEEEeccCCCChHHHHHHHHhhcCCCeEEEec-CCCCCcceeeeeccCCCceeEeeCccchhchhhHH
Q 002357 205 ESIIFLP--PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYT-DFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFV 281 (931)
Q Consensus 205 ~ii~~l~--~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~-~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (931)
..... ...++++||||+.... ++..... .-...++.. .....|+..++. ...
T Consensus 378 --~~~~~~~~~~~~l~~SATp~prt-l~l~~~~--~l~~~~i~~~p~~r~~i~~~~~-----------~~~--------- 432 (630)
T TIGR00643 378 --REKGQGGFTPHVLVMSATPIPRT-LALTVYG--DLDTSIIDELPPGRKPITTVLI-----------KHD--------- 432 (630)
T ss_pred --HHhcccCCCCCEEEEeCCCCcHH-HHHHhcC--CcceeeeccCCCCCCceEEEEe-----------Ccc---------
Confidence 22222 2688999999975432 2211110 001111110 000112211111 000
Q ss_pred HHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHH--cCCCcEEEEecCHHHHHH--------HHHHhcc
Q 002357 282 KLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME--RKFQPVIVFSFSRRECEQ--------HAMSMSK 351 (931)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~~~IVF~~sr~~~~~--------la~~L~~ 351 (931)
....++..+.+ ..+.+++|||+..+.++. ++..|.+
T Consensus 433 ----------------------------------~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~ 478 (630)
T TIGR00643 433 ----------------------------------EKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKK 478 (630)
T ss_pred ----------------------------------hHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHh
Confidence 00112222221 245689999998654432 2222221
Q ss_pred CCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcc
Q 002357 352 LDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMG 431 (931)
Q Consensus 352 ~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~G 431 (931)
. + -...|+.+||+|++.+|+.+++.|++|+++|||||+++++|
T Consensus 479 ~---------------------~----------------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~G 521 (630)
T TIGR00643 479 A---------------------F----------------PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVG 521 (630)
T ss_pred h---------------------C----------------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecC
Confidence 0 0 01248999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 432 LNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 432 Idip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
||+|++++|| .||.. ..+...|.||+||+||.|. .|.|++++.++
T Consensus 522 vDiP~v~~VI----i~~~~---r~gls~lhQ~~GRvGR~g~--~g~~il~~~~~ 566 (630)
T TIGR00643 522 VDVPNATVMV----IEDAE---RFGLSQLHQLRGRVGRGDH--QSYCLLVYKNP 566 (630)
T ss_pred cccCCCcEEE----EeCCC---cCCHHHHHHHhhhcccCCC--CcEEEEEECCC
Confidence 9999999999 56652 2356789999999999987 58999998543
No 58
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.6e-36 Score=338.16 Aligned_cols=320 Identities=20% Similarity=0.239 Sum_probs=241.5
Q ss_pred hhhhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCC
Q 002357 67 GEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKD 145 (931)
Q Consensus 67 ~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~ 145 (931)
..+...|||. +++-|.++|..+..|+++++..|||+||++||.+|.+.. .+-+||++|..+|+..+.+.++..+-.
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---~G~TLVVSPLiSLM~DQV~~l~~~Gi~ 83 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---EGLTLVVSPLISLMKDQVDQLEAAGIR 83 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---CCCEEEECchHHHHHHHHHHHHHcCce
Confidence 3466788998 999999999999999999999999999999999997765 568999999999999999999998866
Q ss_pred eEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCC--chHHHHHHHH---h
Q 002357 146 VGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRE--RGVVWEESII---F 209 (931)
Q Consensus 146 vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~--~g~~~~~ii~---~ 209 (931)
+..+.+..+. ....++++-+||+|.+--......--.+.++||||||++++|+ |.+.+..+-. .
T Consensus 84 A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~ 163 (590)
T COG0514 84 AAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAG 163 (590)
T ss_pred eehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhh
Confidence 6666655432 2357999999999874322222224478999999999999995 6666665543 3
Q ss_pred cCCCceEEEeccCCCChHHHHHHHHhhcCCCe-EEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHH
Q 002357 210 LPPAIKMVFLSATMSNATQFAEWICHLHKQPC-HVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFL 288 (931)
Q Consensus 210 l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~-~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 288 (931)
+| ++.++.||||-+.... .+.+..+..... ....+..||. +++.+.....
T Consensus 164 ~~-~~p~~AlTATA~~~v~-~DI~~~L~l~~~~~~~~sfdRpN-------------i~~~v~~~~~-------------- 214 (590)
T COG0514 164 LP-NPPVLALTATATPRVR-DDIREQLGLQDANIFRGSFDRPN-------------LALKVVEKGE-------------- 214 (590)
T ss_pred CC-CCCEEEEeCCCChHHH-HHHHHHhcCCCcceEEecCCCch-------------hhhhhhhccc--------------
Confidence 45 8899999999865542 233333333333 3333334443 1111111000
Q ss_pred hhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHH
Q 002357 289 KQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQ 368 (931)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~ 368 (931)
....+. .+.........+.||||.||+.|+.+|..|...|+.
T Consensus 215 ------------------------~~~q~~-fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~------------- 256 (590)
T COG0514 215 ------------------------PSDQLA-FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGIS------------- 256 (590)
T ss_pred ------------------------HHHHHH-HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCc-------------
Confidence 000111 111112345577999999999999999999887766
Q ss_pred HHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecC
Q 002357 369 NAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448 (931)
Q Consensus 369 ~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d 448 (931)
++.+||||...+|+.+++.|..+.++|+|||.+|+||||.|++..|| |||
T Consensus 257 --------------------------a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfVi----H~~ 306 (590)
T COG0514 257 --------------------------AGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVI----HYD 306 (590)
T ss_pred --------------------------eEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEE----Eec
Confidence 48999999999999999999999999999999999999999999999 888
Q ss_pred CCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHh
Q 002357 449 GDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKD 493 (931)
Q Consensus 449 ~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~ 493 (931)
. |.|.++|.|-+|||||.|.. +.|++++.+. |....+.
T Consensus 307 l----P~s~EsYyQE~GRAGRDG~~--a~aill~~~~-D~~~~~~ 344 (590)
T COG0514 307 L----PGSIESYYQETGRAGRDGLP--AEAILLYSPE-DIRWQRY 344 (590)
T ss_pred C----CCCHHHHHHHHhhccCCCCc--ceEEEeeccc-cHHHHHH
Confidence 8 99999999999999999985 7888888866 4333333
No 59
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=4.2e-36 Score=327.77 Aligned_cols=328 Identities=16% Similarity=0.211 Sum_probs=264.1
Q ss_pred hhhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh---CCCEEEEEcCchhhHHHHHHHHHHhc
Q 002357 68 EMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEF 143 (931)
Q Consensus 68 ~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~---~~~rvl~l~P~kaL~~Q~~~~l~~~~ 143 (931)
...+.-+|. |+++|..|||++..+.++||+|..|+|||++|..++...+. .....+|++|||+++-|+.+.+....
T Consensus 38 ~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~ 117 (980)
T KOG4284|consen 38 LGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVA 117 (980)
T ss_pred HHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhc
Confidence 344556887 99999999999999999999999999999999988888874 35789999999999999999999887
Q ss_pred C-----CeEEEecccccC------CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCC-CCchHHHHHHHHhcC
Q 002357 144 K-----DVGLMTGDVTLS------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD-RERGVVWEESIIFLP 211 (931)
Q Consensus 144 ~-----~vg~~tGd~~~~------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~-~~~g~~~~~ii~~l~ 211 (931)
+ .+..+.||+... .+++|+|+||+++..+...+.....+++++|+||||.+.+ ..|...+..++..+|
T Consensus 118 ~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP 197 (980)
T KOG4284|consen 118 PSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLP 197 (980)
T ss_pred ccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcc
Confidence 6 577788888653 3588999999999999988888899999999999999987 677888889999999
Q ss_pred CCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCc--ceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHh
Q 002357 212 PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTP--LQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLK 289 (931)
Q Consensus 212 ~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~p--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 289 (931)
...|++.+|||-|.. +.+.+..+..+|..|......+.- +.+|++. +... . +-.+.++
T Consensus 198 ~~rQv~a~SATYp~n--Ldn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~---------~~s~-n----nsveemr---- 257 (980)
T KOG4284|consen 198 QIRQVAAFSATYPRN--LDNLLSKFMRDPALVRFNADDVQLFGIKQYVVA---------KCSP-N----NSVEEMR---- 257 (980)
T ss_pred hhheeeEEeccCchh--HHHHHHHHhcccceeecccCCceeechhheeee---------ccCC-c----chHHHHH----
Confidence 999999999998744 557777887878776655433331 2233321 1111 0 0011110
Q ss_pred hhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHH
Q 002357 290 QKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQN 369 (931)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~ 369 (931)
.++..|-..+..-...++||||++...|+-++..|...|+.
T Consensus 258 -------------------------lklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d-------------- 298 (980)
T KOG4284|consen 258 -------------------------LKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLD-------------- 298 (980)
T ss_pred -------------------------HHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCC--------------
Confidence 01222222333335668999999999999999999998887
Q ss_pred HHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCC
Q 002357 370 AVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDG 449 (931)
Q Consensus 370 ~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~ 449 (931)
+.++.|.|.+.+|..+.+.++.-..+|||+||..+||||-|.+++|| +.|.
T Consensus 299 -------------------------~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVV----NiD~ 349 (980)
T KOG4284|consen 299 -------------------------VTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVV----NIDA 349 (980)
T ss_pred -------------------------eEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEE----ecCC
Confidence 46889999999999999999999999999999999999999999999 6777
Q ss_pred CCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHH
Q 002357 450 DSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMN 489 (931)
Q Consensus 450 ~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~ 489 (931)
|.+-..|.||+|||||.|. .|.+|.++....+.+
T Consensus 350 ----p~d~eTY~HRIGRAgRFG~--~G~aVT~~~~~~e~~ 383 (980)
T KOG4284|consen 350 ----PADEETYFHRIGRAGRFGA--HGAAVTLLEDERELK 383 (980)
T ss_pred ----CcchHHHHHHhhhcccccc--cceeEEEeccchhhh
Confidence 8899999999999999998 478888876654433
No 60
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=340.21 Aligned_cols=389 Identities=25% Similarity=0.379 Sum_probs=275.5
Q ss_pred hhccCCCC-CCHHHHHHH--HHHhcCCcEEEEcCCCCCcHHHHHHHHHHH-HhCCCEEEEEcCchhhHHHHHHHHHHhcC
Q 002357 69 MAKTYSFE-LDPFQRVSV--ACLERNESVLVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPLKALSNQKYRELHQEFK 144 (931)
Q Consensus 69 ~~~~~~f~-l~~~Q~~ai--~~l~~g~~vlv~apTGsGKTl~~~l~i~~~-l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~ 144 (931)
.+...+.. ++.||.+++ +.++.++|.+.++|||+|||+++++-++.. +-..+.++.+.|..+.+..+...+..++.
T Consensus 215 ~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~ 294 (1008)
T KOG0950|consen 215 YAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSI 294 (1008)
T ss_pred HHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhcc
Confidence 33444554 899999997 677899999999999999999999877665 46788899999999999999998888877
Q ss_pred CeEE----Eeccccc---CCCCCeeEecHHHHHHHHhcC--ccccCcccEEEEeccccCCCCCchHHHHHHHHh-----c
Q 002357 145 DVGL----MTGDVTL---SPNASCLVMTTEILRGMLYRG--SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF-----L 210 (931)
Q Consensus 145 ~vg~----~tGd~~~---~~~~~IlV~Tpe~L~~~l~~~--~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~-----l 210 (931)
+.|+ ..|..+. .+.-++.|+|.|+-..++++- ...+..+++||+||.|.+.|.+||...|.++.. .
T Consensus 295 ~~G~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~ 374 (1008)
T KOG0950|consen 295 DLGFPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENL 374 (1008)
T ss_pred ccCCcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhcc
Confidence 6655 3344332 235689999999866544332 123678999999999999999999999987653 2
Q ss_pred CCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhh
Q 002357 211 PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQ 290 (931)
Q Consensus 211 ~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 290 (931)
...+|+||+|||++|...+.+|+. ..++.+.+||+|+..|+.+.. .++..- .. .......+.....
T Consensus 375 ~~~~~iIGMSATi~N~~lL~~~L~------A~~y~t~fRPv~L~E~ik~G~--~i~~~~--r~----~~lr~ia~l~~~~ 440 (1008)
T KOG0950|consen 375 ETSVQIIGMSATIPNNSLLQDWLD------AFVYTTRFRPVPLKEYIKPGS--LIYESS--RN----KVLREIANLYSSN 440 (1008)
T ss_pred ccceeEeeeecccCChHHHHHHhh------hhheecccCcccchhccCCCc--ccccch--hh----HHHHHhhhhhhhh
Confidence 345789999999999999999997 357788999999998885432 222211 10 1111111000000
Q ss_pred hcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHH--HHH
Q 002357 291 KIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQ--VFQ 368 (931)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~--~~~ 368 (931)
. + ..+...+..++..... .+..+||||++|+.|+.+|..+...-.. ......... ...
T Consensus 441 ~----------------g--~~dpD~~v~L~tet~~-e~~~~lvfc~sk~~ce~~a~~~~~~vpk-~~~~e~~~~~~~~~ 500 (1008)
T KOG0950|consen 441 L----------------G--DEDPDHLVGLCTETAP-EGSSVLVFCPSKKNCENVASLIAKKVPK-HIKSEKRLGLWELL 500 (1008)
T ss_pred c----------------c--cCCCcceeeehhhhhh-cCCeEEEEcCcccchHHHHHHHHHHhhH-hhhhhhhhhHHHHH
Confidence 0 0 0111233333333332 3456999999999999999777542111 100000000 001
Q ss_pred HHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecC
Q 002357 369 NAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448 (931)
Q Consensus 369 ~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d 448 (931)
.....+......+..+ +...+..|+++||+|++.++|+.|+..|+.|.+.|++||++++.|+|.|++.|+|.. -
T Consensus 501 s~s~~lr~~~~~ld~V--l~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIira----P 574 (1008)
T KOG0950|consen 501 SISNLLRRIPGILDPV--LAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRA----P 574 (1008)
T ss_pred HHHhHhhcCCcccchH--HheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeC----C
Confidence 1111122212222222 566788899999999999999999999999999999999999999999999999943 3
Q ss_pred CCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhhcc
Q 002357 449 GDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLEG 498 (931)
Q Consensus 449 ~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~~~ 498 (931)
.-+...++..+|.||+|||||.|.+..|.+|+++.+. +......++.+.
T Consensus 575 ~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~-e~~~~~~lv~~~ 623 (1008)
T KOG0950|consen 575 YVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSS-EKKRVRELVNSP 623 (1008)
T ss_pred ccccchhhhhhHHhhhhhhhhcccccCcceEEEeecc-chhHHHHHHhcc
Confidence 3344578899999999999999999999999999877 555555676665
No 61
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.8e-33 Score=303.90 Aligned_cols=364 Identities=21% Similarity=0.236 Sum_probs=248.6
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC-CCEEEEEcCchhhHHHHHHHHHHhcC----CeEEE
Q 002357 75 FELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSPLKALSNQKYRELHQEFK----DVGLM 149 (931)
Q Consensus 75 f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~-~~rvl~l~P~kaL~~Q~~~~l~~~~~----~vg~~ 149 (931)
.+++.||.........+ |.||+.|||-|||++|.+-+...+.. ++++|+++||+-|+.|.++.+++.++ .+..+
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~l 92 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAAL 92 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeee
Confidence 36889999888766654 99999999999999999988877754 44799999999999999999999987 68899
Q ss_pred ecccccCC------CCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCC
Q 002357 150 TGDVTLSP------NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATM 223 (931)
Q Consensus 150 tGd~~~~~------~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~ 223 (931)
||.++.+. ...|+|+||+.+.|-+..|...+.++.++||||||+.-...-...+-.-.....+++.+++||||+
T Consensus 93 tGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASP 172 (542)
T COG1111 93 TGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASP 172 (542)
T ss_pred cCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCC
Confidence 99988663 589999999999999999999999999999999999875443444444455567788999999999
Q ss_pred CChH-HHHHHHHhhcCCCeEEEecCCCCCcceeeeeccC-------------------------------CCceeEeeCc
Q 002357 224 SNAT-QFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVG-------------------------------GSGLYLVVDE 271 (931)
Q Consensus 224 ~n~~-e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~-------------------------------~~~~~~~~~~ 271 (931)
.+.. .+.+-+..+.-..+.+....... +..|+.... ..++......
T Consensus 173 Gs~~ekI~eV~~nLgIe~vevrTE~d~D--V~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~ 250 (542)
T COG1111 173 GSDLEKIQEVVENLGIEKVEVRTEEDPD--VRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSP 250 (542)
T ss_pred CCCHHHHHHHHHhCCcceEEEecCCCcc--HHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCc
Confidence 7665 46666666554444443322111 111111100 0011111110
Q ss_pred cchhchhhHHHHH-HHHHhhhcCCC----------------------------------------cCCCCC-CCCc-cC-
Q 002357 272 KEQFREDNFVKLQ-DTFLKQKIGGR----------------------------------------RENGKA-SGRM-AK- 307 (931)
Q Consensus 272 ~~~~~~~~~~~~~-~~l~~~~~~~~----------------------------------------~~~~~~-~~~~-~~- 307 (931)
....++..+. ..+......+. ...++. .... ..
T Consensus 251 ---~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d 327 (542)
T COG1111 251 ---VSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLAD 327 (542)
T ss_pred ---ccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcC
Confidence 0001111111 00000000000 000000 0000 00
Q ss_pred -------------CCCCCCCCCHHHHHHHHHH----cCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHH
Q 002357 308 -------------GGSGSGGSDIFKIVKMIME----RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNA 370 (931)
Q Consensus 308 -------------~~~~~~~~~~~~ll~~l~~----~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~ 370 (931)
....-..+++..+.+.+.+ .+..++|||++.|.+++.++..|.+.+.... ..|
T Consensus 328 ~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~------~rF---- 397 (542)
T COG1111 328 PYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR------VRF---- 397 (542)
T ss_pred hhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce------eEE----
Confidence 0112234555555555443 4567999999999999999999988665531 000
Q ss_pred HhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCC
Q 002357 371 VDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGD 450 (931)
Q Consensus 371 ~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~ 450 (931)
+..+-.-+..||++.++..+++.|++|..+|||||++.++|+|+|++++|| .|++
T Consensus 398 --------------------iGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVi----fYEp- 452 (542)
T COG1111 398 --------------------IGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVI----FYEP- 452 (542)
T ss_pred --------------------eeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEE----EecC-
Confidence 001112345899999999999999999999999999999999999999999 7777
Q ss_pred CCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 451 SHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 451 ~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
-.|+..++||.||+||... |.++++..+.
T Consensus 453 ---vpSeIR~IQR~GRTGR~r~---Grv~vLvt~g 481 (542)
T COG1111 453 ---VPSEIRSIQRKGRTGRKRK---GRVVVLVTEG 481 (542)
T ss_pred ---CcHHHHHHHhhCccccCCC---CeEEEEEecC
Confidence 6688899999999999743 8888887665
No 62
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=7.3e-34 Score=331.68 Aligned_cols=319 Identities=14% Similarity=0.078 Sum_probs=217.1
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCC-EEEEEcCchhhHHHHHHHHHHhcC----CeEEE
Q 002357 75 FELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ-RVIYTSPLKALSNQKYRELHQEFK----DVGLM 149 (931)
Q Consensus 75 f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~-rvl~l~P~kaL~~Q~~~~l~~~~~----~vg~~ 149 (931)
+.|+++|.+|++.+..+++.+++||||+|||+++...+...+..+. ++||++||++|++|+.+++.++.. .++.+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 6799999999999999999999999999999987654443344444 999999999999999999998763 34445
Q ss_pred ecccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCCChHH-
Q 002357 150 TGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQ- 228 (931)
Q Consensus 150 tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n~~e- 228 (931)
.|+.....+.+|+|+||+++.+.. ...++++++||+||||++.. ..+..++..+++..++++||||+.+...
T Consensus 193 ~~g~~~~~~~~I~VaT~qsl~~~~---~~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~~~~~~lGLTATp~~~~~~ 265 (501)
T PHA02558 193 YSGTAKDTDAPIVVSTWQSAVKQP---KEWFDQFGMVIVDECHLFTG----KSLTSIITKLDNCKFKFGLTGSLRDGKAN 265 (501)
T ss_pred ecCcccCCCCCEEEeeHHHHhhch---hhhccccCEEEEEchhcccc----hhHHHHHHhhhccceEEEEeccCCCcccc
Confidence 555555567899999999987543 23578999999999999974 3577788888878899999999975432
Q ss_pred HHHHHHhhcCCCeEEEecC-----CCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCC
Q 002357 229 FAEWICHLHKQPCHVVYTD-----FRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASG 303 (931)
Q Consensus 229 ~~~~l~~~~~~~~~v~~~~-----~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 303 (931)
...+.+ ..+...+.+... ....+++.......... ..........+...+..+...
T Consensus 266 ~~~~~~-~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~~~l~~~------------- 326 (501)
T PHA02558 266 ILQYVG-LFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPD-----EDRVKLKGEDYQEEIKYITSH------------- 326 (501)
T ss_pred HHHHHH-hhCCceEEecHHHHHhCCCcCCceEEEEeccCCH-----HHhhhhcccchHHHHHHHhcc-------------
Confidence 111111 112111111100 00011111000000000 000000001111111111110
Q ss_pred CccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChh
Q 002357 304 RMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPA 383 (931)
Q Consensus 304 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~ 383 (931)
..+...+..++..+.+ .+.+++|||.++++|+.+++.|.+.+.+
T Consensus 327 -------~~Rn~~I~~~~~~~~~-~~~~~lV~~~~~~h~~~L~~~L~~~g~~---------------------------- 370 (501)
T PHA02558 327 -------TKRNKWIANLALKLAK-KGENTFVMFKYVEHGKPLYEMLKKVYDK---------------------------- 370 (501)
T ss_pred -------HHHHHHHHHHHHHHHh-cCCCEEEEEEEHHHHHHHHHHHHHcCCC----------------------------
Confidence 0011122333333332 4567899999999999999999876654
Q ss_pred HHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEec-chhhcccCCCCcEEEEecceecCCCCCcccCHHHHHH
Q 002357 384 IELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFAT-ETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQ 462 (931)
Q Consensus 384 ~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT-~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Q 462 (931)
+.++||++++.+|+.+++.|++|...||||| +++++|+|+|.+++||. +++ +.+...|+|
T Consensus 371 -----------v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl----~~p----~~s~~~~~Q 431 (501)
T PHA02558 371 -----------VYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIF----AHP----SKSKIIVLQ 431 (501)
T ss_pred -----------EEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEE----ecC----Ccchhhhhh
Confidence 6889999999999999999999999999998 89999999999999994 444 667889999
Q ss_pred hhhccCCCCCCC
Q 002357 463 MSGRAGRRGKDD 474 (931)
Q Consensus 463 r~GRaGR~G~~~ 474 (931)
|+||++|.+..+
T Consensus 432 riGR~~R~~~~K 443 (501)
T PHA02558 432 SIGRVLRKHGSK 443 (501)
T ss_pred hhhccccCCCCC
Confidence 999999988653
No 63
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=7.1e-34 Score=342.27 Aligned_cols=314 Identities=20% Similarity=0.231 Sum_probs=231.7
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC-----CeEEEec-c
Q 002357 79 PFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-----DVGLMTG-D 152 (931)
Q Consensus 79 ~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-----~vg~~tG-d 152 (931)
.+-.+.+..+.++++++++|+||||||.++.++++.....+.+++++.|+|+++.|+++.+.+.++ .||...+ +
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~ 84 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGE 84 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccc
Confidence 445567788889999999999999999999999988776678999999999999999999976654 3555433 3
Q ss_pred cccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccc-cCCCCCchHHH-HHHHHhcCCCceEEEeccCCCChHHHH
Q 002357 153 VTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH-YMKDRERGVVW-EESIIFLPPAIKMVFLSATMSNATQFA 230 (931)
Q Consensus 153 ~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH-~l~~~~~g~~~-~~ii~~l~~~~q~v~lSAT~~n~~e~~ 230 (931)
.......+|+|+||++|.+++... ..++++++|||||+| ++.+.+++..+ ..+...++++.|+|+||||+++.. +.
T Consensus 85 ~~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~-l~ 162 (819)
T TIGR01970 85 NKVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGER-LS 162 (819)
T ss_pred cccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH-HH
Confidence 345567899999999999988764 468999999999999 56776666544 345556788999999999997543 55
Q ss_pred HHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCC
Q 002357 231 EWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGS 310 (931)
Q Consensus 231 ~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 310 (931)
++++ + +.++....+..|++++..+. ..... +...
T Consensus 163 ~~l~----~-~~vI~~~gr~~pVe~~y~~~---------~~~~~-----~~~~--------------------------- 196 (819)
T TIGR01970 163 SLLP----D-APVVESEGRSFPVEIRYLPL---------RGDQR-----LEDA--------------------------- 196 (819)
T ss_pred HHcC----C-CcEEEecCcceeeeeEEeec---------chhhh-----HHHH---------------------------
Confidence 5443 1 22333344444554432211 11100 0000
Q ss_pred CCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHH
Q 002357 311 GSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPL 390 (931)
Q Consensus 311 ~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~ 390 (931)
+...+..+.....+.+|||++++++++.++..|.+....
T Consensus 197 ------v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~----------------------------------- 235 (819)
T TIGR01970 197 ------VSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDS----------------------------------- 235 (819)
T ss_pred ------HHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCC-----------------------------------
Confidence 111222222233578999999999999999999651000
Q ss_pred hhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecce----ecCCCC------CcccCHHHH
Q 002357 391 LKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVK----KWDGDS------HRYIGSGEY 460 (931)
Q Consensus 391 l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~----~~d~~~------~~~~s~~~y 460 (931)
...|..+||+|++.+|..+++.|++|..+|||||+++++|||+|++++||++.. .||... ..++|..+|
T Consensus 236 -~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa 314 (819)
T TIGR01970 236 -DVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASA 314 (819)
T ss_pred -CcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHH
Confidence 012678999999999999999999999999999999999999999999997543 355442 236788999
Q ss_pred HHhhhccCCCCCCCceEEEEEeCCc
Q 002357 461 IQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 461 ~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
.||+|||||.+ .|.||.++++.
T Consensus 315 ~QR~GRAGR~~---~G~cyrL~t~~ 336 (819)
T TIGR01970 315 TQRAGRAGRLE---PGVCYRLWSEE 336 (819)
T ss_pred HhhhhhcCCCC---CCEEEEeCCHH
Confidence 99999999995 49999999764
No 64
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=4.7e-34 Score=336.80 Aligned_cols=310 Identities=15% Similarity=0.161 Sum_probs=209.9
Q ss_pred hhhhccCCCCCCHHHHHHHHHHhcCC-cEEEEcCCCCCcHHHHHHHHHH---HHhCCCEEEEEcCchhhHHHHHHHHHHh
Q 002357 67 GEMAKTYSFELDPFQRVSVACLERNE-SVLVSAHTSAGKTAVAEYAIAM---AFRDKQRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 67 ~~~~~~~~f~l~~~Q~~ai~~l~~g~-~vlv~apTGsGKTl~~~l~i~~---~l~~~~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
.-|....||+|+|||.++++.+..|+ +++++||||||||.++...++. ......+++|++|||+|++|+++.+.++
T Consensus 6 ~ff~~~~G~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~ 85 (844)
T TIGR02621 6 EWYQGLHGYSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKI 85 (844)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHH
Confidence 34555578999999999999999998 5788899999999965422221 1122357788999999999999988876
Q ss_pred cC---------------------------CeEEEecccccC-------CCCCeeEecHHHHHHHH-hcC---c-------
Q 002357 143 FK---------------------------DVGLMTGDVTLS-------PNASCLVMTTEILRGML-YRG---S------- 177 (931)
Q Consensus 143 ~~---------------------------~vg~~tGd~~~~-------~~~~IlV~Tpe~L~~~l-~~~---~------- 177 (931)
.. .+..++|+.+.+ ..++|+|+|++.+.+-. .++ +
T Consensus 86 ~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ 165 (844)
T TIGR02621 86 GERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLH 165 (844)
T ss_pred HHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccch
Confidence 53 245678988754 35799999976553221 111 0
Q ss_pred -cccCcccEEEEeccccCCCCCchHHHHHHHHhc--CCC---ceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCC
Q 002357 178 -EVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL--PPA---IKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPT 251 (931)
Q Consensus 178 -~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l--~~~---~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~ 251 (931)
-.+.++.++|||||| .+.+|...+..++..+ ++. .|+++||||++.... +....+...+..+.....+.+
T Consensus 166 ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~--~l~~~~~~~p~~i~V~~~~l~ 241 (844)
T TIGR02621 166 AGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGP--DRTTLLSAEDYKHPVLKKRLA 241 (844)
T ss_pred hhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHH--HHHHHHccCCceeeccccccc
Confidence 026789999999999 5678888899988864 432 699999999985432 222222222322221111111
Q ss_pred c--ceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCC
Q 002357 252 P--LQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKF 329 (931)
Q Consensus 252 p--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 329 (931)
. +.++ ..++...+ .. .....+..+....+
T Consensus 242 a~ki~q~----------v~v~~e~K-----l~----------------------------------~lv~~L~~ll~e~g 272 (844)
T TIGR02621 242 AKKIVKL----------VPPSDEKF-----LS----------------------------------TMVKELNLLMKDSG 272 (844)
T ss_pred ccceEEE----------EecChHHH-----HH----------------------------------HHHHHHHHHHhhCC
Confidence 0 0111 01110000 00 00111112223355
Q ss_pred CcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHH-
Q 002357 330 QPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKE- 408 (931)
Q Consensus 330 ~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~- 408 (931)
.++||||+|++.|+.+++.|.+.+ +..+||+|++.+|+
T Consensus 273 ~~vLVF~NTv~~Aq~L~~~L~~~g-----------------------------------------~~lLHG~m~q~dR~~ 311 (844)
T TIGR02621 273 GAILVFCRTVKHVRKVFAKLPKEK-----------------------------------------FELLTGTLRGAERDD 311 (844)
T ss_pred CcEEEEECCHHHHHHHHHHHHhcC-----------------------------------------CeEeeCCCCHHHHhh
Confidence 789999999999999999997632 36789999999999
Q ss_pred ----HHHHHHhc----CC-------ceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCC
Q 002357 409 ----LVELLFQE----GL-------VKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKD 473 (931)
Q Consensus 409 ----~v~~~F~~----g~-------i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~ 473 (931)
.+++.|++ |. .+|||||+++++|||++. ++||+ ++. | .+.|+||+||+||.|..
T Consensus 312 ~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~----d~a----P--~esyIQRiGRtgR~G~~ 380 (844)
T TIGR02621 312 LVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVC----DLA----P--FESMQQRFGRVNRFGEL 380 (844)
T ss_pred HHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEE----CCC----C--HHHHHHHhcccCCCCCC
Confidence 78889987 54 789999999999999997 67763 322 3 57899999999999986
Q ss_pred CceEEEEE
Q 002357 474 DRGICIIM 481 (931)
Q Consensus 474 ~~g~~ii~ 481 (931)
+.+.+.++
T Consensus 381 ~~~~i~vv 388 (844)
T TIGR02621 381 QACQIAVV 388 (844)
T ss_pred CCceEEEE
Confidence 55544443
No 65
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.6e-33 Score=338.35 Aligned_cols=315 Identities=19% Similarity=0.249 Sum_probs=229.2
Q ss_pred CHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC-----CeEEEecc
Q 002357 78 DPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-----DVGLMTGD 152 (931)
Q Consensus 78 ~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-----~vg~~tGd 152 (931)
+.+-.+.+..+.++++++++||||||||+++.++++.....+.+++++.|+|+++.|+++.+.+.++ .||...++
T Consensus 7 ~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~ 86 (812)
T PRK11664 7 AAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRA 86 (812)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecC
Confidence 3445567788889999999999999999999988887654556999999999999999999976654 46665554
Q ss_pred c-ccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEecccc-CCCCCchH-HHHHHHHhcCCCceEEEeccCCCChHHH
Q 002357 153 V-TLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHY-MKDRERGV-VWEESIIFLPPAIKMVFLSATMSNATQF 229 (931)
Q Consensus 153 ~-~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~-l~~~~~g~-~~~~ii~~l~~~~q~v~lSAT~~n~~e~ 229 (931)
. ..+....|+|+||++|.+++... ..++++++|||||+|. ..+.+... ...+++..++++.|+++||||++.. .+
T Consensus 87 ~~~~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~-~l 164 (812)
T PRK11664 87 ESKVGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDND-RL 164 (812)
T ss_pred ccccCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHH-HH
Confidence 4 35567789999999999988764 4689999999999996 34433221 2234556678899999999999753 35
Q ss_pred HHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCC
Q 002357 230 AEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGG 309 (931)
Q Consensus 230 ~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 309 (931)
..++. +.. ++....+..|++++..+.. .... +..
T Consensus 165 ~~~~~----~~~-~I~~~gr~~pV~~~y~~~~---------~~~~-----~~~--------------------------- 198 (812)
T PRK11664 165 QQLLP----DAP-VIVSEGRSFPVERRYQPLP---------AHQR-----FDE--------------------------- 198 (812)
T ss_pred HHhcC----CCC-EEEecCccccceEEeccCc---------hhhh-----HHH---------------------------
Confidence 54442 222 2333344455554332111 0000 000
Q ss_pred CCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHH
Q 002357 310 SGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLP 389 (931)
Q Consensus 310 ~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~ 389 (931)
.+...+..+.....+.+|||++++++++.+++.|.+.....
T Consensus 199 ------~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~--------------------------------- 239 (812)
T PRK11664 199 ------AVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVASD--------------------------------- 239 (812)
T ss_pred ------HHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhccCC---------------------------------
Confidence 01112222223345789999999999999999997511000
Q ss_pred HhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecce----ecCCCC------CcccCHHH
Q 002357 390 LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVK----KWDGDS------HRYIGSGE 459 (931)
Q Consensus 390 ~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~----~~d~~~------~~~~s~~~ 459 (931)
-.+..+||+|++.+|+.++..|++|..+|||||+++++|||+|++++||++.. .||+.. ..++|..+
T Consensus 240 ---~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkas 316 (812)
T PRK11664 240 ---VLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQAS 316 (812)
T ss_pred ---ceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhh
Confidence 11678999999999999999999999999999999999999999999997532 366543 23568899
Q ss_pred HHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 460 YIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 460 y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
|+||+|||||.+ .|.||.++++.
T Consensus 317 a~QR~GRaGR~~---~G~cyrL~t~~ 339 (812)
T PRK11664 317 MTQRAGRAGRLE---PGICLHLYSKE 339 (812)
T ss_pred hhhhccccCCCC---CcEEEEecCHH
Confidence 999999999985 49999999865
No 66
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=7.1e-33 Score=312.66 Aligned_cols=295 Identities=16% Similarity=0.201 Sum_probs=200.8
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHh--CCCEEEEEcCchhhHHHHHHHHHHhcC-CeEEEeccccc--------------
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAFR--DKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDVTL-------------- 155 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~--~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~vg~~tGd~~~-------------- 155 (931)
+++++||||||||.+|+++++..+. .+.+++|++|+++|++|+++.+...|+ .+++++|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 4899999999999999999988773 467999999999999999999999987 67777765431
Q ss_pred -------C----CCCCeeEecHHHHHHHHhcCcc----ccC--cccEEEEeccccCCCCCchHHHHHHHHhcC-CCceEE
Q 002357 156 -------S----PNASCLVMTTEILRGMLYRGSE----VLK--EVAWVIFDEIHYMKDRERGVVWEESIIFLP-PAIKMV 217 (931)
Q Consensus 156 -------~----~~~~IlV~Tpe~L~~~l~~~~~----~l~--~l~~vViDEaH~l~~~~~g~~~~~ii~~l~-~~~q~v 217 (931)
+ ..++|+|+||+.+...+..... .+. ..++|||||+|.+.+..++. +..++..++ ...|++
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcCCCEE
Confidence 0 1367999999999877765211 111 23799999999999765555 444444443 578999
Q ss_pred EeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcC
Q 002357 218 FLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRE 297 (931)
Q Consensus 218 ~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 297 (931)
++|||+|+ .+.+|+......... ......+.... ....+.......
T Consensus 160 ~~SATlp~--~l~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~------------------------ 205 (358)
T TIGR01587 160 LMSATLPK--FLKEYAEKIGYVEFN---EPLDLKEERRF-----ERHRFIKIESDK------------------------ 205 (358)
T ss_pred EEecCchH--HHHHHHhcCCCcccc---cCCCCcccccc-----ccccceeecccc------------------------
Confidence 99999983 344555433211000 00000000000 000000000000
Q ss_pred CCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcc
Q 002357 298 NGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEE 377 (931)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~ 377 (931)
......+..+++.+ ..+.++||||++++.|+.++..|.+.+..
T Consensus 206 -------------~~~~~~l~~l~~~~--~~~~~~lVf~~t~~~~~~~~~~L~~~~~~---------------------- 248 (358)
T TIGR01587 206 -------------VGEISSLERLLEFI--KKGGKIAIIVNTVDRAQEFYQQLKENAPE---------------------- 248 (358)
T ss_pred -------------ccCHHHHHHHHHHh--hCCCeEEEEECCHHHHHHHHHHHHhhcCC----------------------
Confidence 00011122233222 24578999999999999999999764432
Q ss_pred cCCChhHHhHHHHhhccceeccCCCCHHHHHHH----HHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCc
Q 002357 378 DRNLPAIELMLPLLKRGIAVHHSGLLPVIKELV----ELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHR 453 (931)
Q Consensus 378 d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v----~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~ 453 (931)
..+..+||++++.+|+.+ ++.|++|..+|||||+++++|||+| .++|| .++
T Consensus 249 ---------------~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi----~~~----- 303 (358)
T TIGR01587 249 ---------------EEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMI----TEL----- 303 (358)
T ss_pred ---------------CeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEE----EcC-----
Confidence 127899999999999764 7889999999999999999999997 55666 333
Q ss_pred ccCHHHHHHhhhccCCCCCCC--ceEEEEEeCCc
Q 002357 454 YIGSGEYIQMSGRAGRRGKDD--RGICIIMVDEQ 485 (931)
Q Consensus 454 ~~s~~~y~Qr~GRaGR~G~~~--~g~~ii~~~~~ 485 (931)
.++.+|+||+||+||.|... .|.++++....
T Consensus 304 -~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 304 -APIDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred -CCHHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 34688999999999998753 35777776544
No 67
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-34 Score=298.16 Aligned_cols=322 Identities=19% Similarity=0.210 Sum_probs=252.9
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC----CCEEEEEcCchhhHHHHHHHHHHhcC
Q 002357 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYTSPLKALSNQKYRELHQEFK 144 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~----~~rvl~l~P~kaL~~Q~~~~l~~~~~ 144 (931)
..+-+|. |+|+|++.+|.++.+++++..|-||||||.+|.+|++..+.. |.|+++++||++|+.|..+.++....
T Consensus 36 I~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgr 115 (529)
T KOG0337|consen 36 IHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGR 115 (529)
T ss_pred HHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcc
Confidence 3345777 999999999999999999999999999999999999999865 45999999999999999999888866
Q ss_pred ----CeEEEecccc-------cCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCC
Q 002357 145 ----DVGLMTGDVT-------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPA 213 (931)
Q Consensus 145 ----~vg~~tGd~~-------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~ 213 (931)
...+++|+.+ ++.++||+++||+++..+.-.-...++.+.||||||++.+..++|.....+++..+|..
T Consensus 116 gt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~ 195 (529)
T KOG0337|consen 116 GTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPES 195 (529)
T ss_pred ccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCc
Confidence 3444555444 46689999999999987765555778999999999999999999999999999999999
Q ss_pred ceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCC-C-CCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhh
Q 002357 214 IKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDF-R-PTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQK 291 (931)
Q Consensus 214 ~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~-r-p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 291 (931)
.|.++||||+|+.. .++...-...|..+...-. + ...+++.. +.+
T Consensus 196 ~QTllfSatlp~~l--v~fakaGl~~p~lVRldvetkise~lk~~f---------~~~---------------------- 242 (529)
T KOG0337|consen 196 RQTLLFSATLPRDL--VDFAKAGLVPPVLVRLDVETKISELLKVRF---------FRV---------------------- 242 (529)
T ss_pred ceEEEEeccCchhh--HHHHHccCCCCceEEeehhhhcchhhhhhe---------eee----------------------
Confidence 99999999999653 3444443344444432110 0 00011110 000
Q ss_pred cCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHc-CCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHH
Q 002357 292 IGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMER-KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNA 370 (931)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~ 370 (931)
....+...|+..+... ....++|||.++.+++.+...|...|+.
T Consensus 243 --------------------~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~--------------- 287 (529)
T KOG0337|consen 243 --------------------RKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGE--------------- 287 (529)
T ss_pred --------------------ccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCC---------------
Confidence 1122333444444433 2357999999999999999999887665
Q ss_pred HhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCC
Q 002357 371 VDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGD 450 (931)
Q Consensus 371 ~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~ 450 (931)
...+.|.|.+..|..-...|+.++..+||.|+++++|+|+|-.+-|| +||.
T Consensus 288 ------------------------~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvi----nyd~- 338 (529)
T KOG0337|consen 288 ------------------------GSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVI----NYDF- 338 (529)
T ss_pred ------------------------ccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccc----cccC-
Confidence 35678999999999999999999999999999999999999999999 8888
Q ss_pred CCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHH
Q 002357 451 SHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTL 491 (931)
Q Consensus 451 ~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l 491 (931)
|.+..-|+||+||+.|+|..+..+.++..++....-.+
T Consensus 339 ---p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL 376 (529)
T KOG0337|consen 339 ---PPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDL 376 (529)
T ss_pred ---CCCCceEEEEecchhhccccceEEEEEecccchhhhhh
Confidence 88888899999999999998777777776655433333
No 68
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=6.1e-32 Score=336.25 Aligned_cols=270 Identities=18% Similarity=0.142 Sum_probs=190.8
Q ss_pred hhhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC---
Q 002357 68 EMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK--- 144 (931)
Q Consensus 68 ~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~--- 144 (931)
-|...+||+|+++|+.+++.+..|+|++++||||+|||..++.++.....++.+++|++||++|++|+++.++.++.
T Consensus 72 ~f~~~~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~ 151 (1176)
T PRK09401 72 FFKKKTGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVG 151 (1176)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcC
Confidence 45567799999999999999999999999999999999755443333335688999999999999999999999876
Q ss_pred -CeEEEeccccc-------------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCC-----------Cc
Q 002357 145 -DVGLMTGDVTL-------------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDR-----------ER 199 (931)
Q Consensus 145 -~vg~~tGd~~~-------------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~-----------~~ 199 (931)
.+..+.|+.+. +.+++|+|+||++|.+++. ......++++|+||||+++++ +|
T Consensus 152 ~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF 229 (1176)
T PRK09401 152 CGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGF 229 (1176)
T ss_pred ceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCC
Confidence 34445554321 2458999999999998775 233456999999999999874 34
Q ss_pred h-HHHHHHHHhcCC------------------------CceEEEeccCCCCh-HHHHHHHHhhcCCCeEEEecCCCC--C
Q 002357 200 G-VVWEESIIFLPP------------------------AIKMVFLSATMSNA-TQFAEWICHLHKQPCHVVYTDFRP--T 251 (931)
Q Consensus 200 g-~~~~~ii~~l~~------------------------~~q~v~lSAT~~n~-~e~~~~l~~~~~~~~~v~~~~~rp--~ 251 (931)
. ..++.++..++. ..|++++|||++.. ... ..+.. ...+....... .
T Consensus 230 ~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~-~l~~~----ll~~~v~~~~~~~r 304 (1176)
T PRK09401 230 SEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV-KLFRE----LLGFEVGSPVFYLR 304 (1176)
T ss_pred CHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH-HHhhc----cceEEecCcccccC
Confidence 2 345555555543 68999999999753 221 11111 11111111110 1
Q ss_pred cceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCc
Q 002357 252 PLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQP 331 (931)
Q Consensus 252 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 331 (931)
.+.+ .+...+ .....+...+... +.+
T Consensus 305 nI~~---------~yi~~~--------------------------------------------~k~~~L~~ll~~l-~~~ 330 (1176)
T PRK09401 305 NIVD---------SYIVDE--------------------------------------------DSVEKLVELVKRL-GDG 330 (1176)
T ss_pred CceE---------EEEEcc--------------------------------------------cHHHHHHHHHHhc-CCC
Confidence 1111 111111 0112233333332 357
Q ss_pred EEEEecCHHH---HHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHH
Q 002357 332 VIVFSFSRRE---CEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKE 408 (931)
Q Consensus 332 ~IVF~~sr~~---~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~ 408 (931)
+||||+++.. |+.++..|...|+. +..+||+| +.
T Consensus 331 ~LIFv~t~~~~~~ae~l~~~L~~~gi~---------------------------------------v~~~hg~l----~~ 367 (1176)
T PRK09401 331 GLIFVPSDKGKEYAEELAEYLEDLGIN---------------------------------------AELAISGF----ER 367 (1176)
T ss_pred EEEEEecccChHHHHHHHHHHHHCCCc---------------------------------------EEEEeCcH----HH
Confidence 9999999877 99999999987776 57899999 22
Q ss_pred HHHHHHhcCCceEEEe----cchhhcccCCCC-cEEEEe
Q 002357 409 LVELLFQEGLVKALFA----TETFAMGLNMPA-KTVVFT 442 (931)
Q Consensus 409 ~v~~~F~~g~i~vLva----T~~la~GIdip~-~~vVI~ 442 (931)
.++.|++|+++|||| |++++||||+|+ +++||+
T Consensus 368 -~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~ 405 (1176)
T PRK09401 368 -KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIF 405 (1176)
T ss_pred -HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEE
Confidence 349999999999999 689999999999 788884
No 69
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=5.6e-32 Score=318.39 Aligned_cols=308 Identities=16% Similarity=0.180 Sum_probs=209.5
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCCCCcHHH---------HHHHHHHHH---h---CCCEEEEEcCchhhHHHHHHHHHHhc
Q 002357 79 PFQRVSVACLERNESVLVSAHTSAGKTAV---------AEYAIAMAF---R---DKQRVIYTSPLKALSNQKYRELHQEF 143 (931)
Q Consensus 79 ~~Q~~ai~~l~~g~~vlv~apTGsGKTl~---------~~l~i~~~l---~---~~~rvl~l~P~kaL~~Q~~~~l~~~~ 143 (931)
.+|.++++.+.+|++++++|+||||||.+ |.++.+..+ . .+.++++++||++|+.|...++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 45888999999999999999999999997 333333332 2 35689999999999999999988754
Q ss_pred C-------CeEEEeccccc------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc
Q 002357 144 K-------DVGLMTGDVTL------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL 210 (931)
Q Consensus 144 ~-------~vg~~tGd~~~------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l 210 (931)
+ .+.+..|+.+. ....+++|+|++.. ...++++++|||||||.+... +.....++..+
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~--~DllL~llk~~ 317 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQI--GDIIIAVARKH 317 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccc--hhHHHHHHHHh
Confidence 3 35667887652 12468999997521 124789999999999998765 44444444433
Q ss_pred -CCCceEEEeccCCCCh-HHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHH
Q 002357 211 -PPAIKMVFLSATMSNA-TQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFL 288 (931)
Q Consensus 211 -~~~~q~v~lSAT~~n~-~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 288 (931)
++..|+++||||++.. ..+..+++ ++..+........|++++...... ..... ..+..
T Consensus 318 ~~~~rq~ILmSATl~~dv~~l~~~~~----~p~~I~I~grt~~pV~~~yi~~~~-------~~~~~---~~y~~------ 377 (675)
T PHA02653 318 IDKIRSLFLMTATLEDDRDRIKEFFP----NPAFVHIPGGTLFPISEVYVKNKY-------NPKNK---RAYIE------ 377 (675)
T ss_pred hhhcCEEEEEccCCcHhHHHHHHHhc----CCcEEEeCCCcCCCeEEEEeecCc-------ccccc---hhhhH------
Confidence 3445999999999743 34544443 344444332222455544322110 00000 00000
Q ss_pred hhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHH---HcCCCcEEEEecCHHHHHHHHHHhccC--CCCChHHHHHH
Q 002357 289 KQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIM---ERKFQPVIVFSFSRRECEQHAMSMSKL--DFNTQEEKDTV 363 (931)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~---~~~~~~~IVF~~sr~~~~~la~~L~~~--~~~~~~e~~~i 363 (931)
.....++..+. ....+.+|||++++..|+.+++.|.+. ++.
T Consensus 378 --------------------------~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~-------- 423 (675)
T PHA02653 378 --------------------------EEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYD-------- 423 (675)
T ss_pred --------------------------HHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCce--------
Confidence 00011222222 123468999999999999999999763 221
Q ss_pred HHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHH-hcCCceEEEecchhhcccCCCCcEEEEe
Q 002357 364 EQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLF-QEGLVKALFATETFAMGLNMPAKTVVFT 442 (931)
Q Consensus 364 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F-~~g~i~vLvaT~~la~GIdip~~~vVI~ 442 (931)
+..+||+|++. +.+++.| ++|..+|||||+++++|||+|++++||+
T Consensus 424 -------------------------------v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID 470 (675)
T PHA02653 424 -------------------------------FYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYD 470 (675)
T ss_pred -------------------------------EEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEE
Confidence 67899999975 4556666 7899999999999999999999999996
Q ss_pred cceecCCC----CCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 443 AVKKWDGD----SHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 443 ~~~~~d~~----~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
+...+.+. ...+.|.++|+||+|||||.+ .|.|+.++++.
T Consensus 471 ~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~---~G~c~rLyt~~ 514 (675)
T PHA02653 471 TGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVS---PGTYVYFYDLD 514 (675)
T ss_pred CCCccCCCcccCcccccCHHHHHHhccCcCCCC---CCeEEEEECHH
Confidence 64222221 123679999999999999994 49999999875
No 70
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=100.00 E-value=9.4e-33 Score=296.29 Aligned_cols=227 Identities=46% Similarity=0.788 Sum_probs=198.8
Q ss_pred HHHHHhhHHHHHhhccchhHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhcChhhHHhcccCCceEE
Q 002357 503 EHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLMSEITRPERVLYYLGSGRLIK 582 (931)
Q Consensus 503 e~~l~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~i~ 582 (931)
|+||++||+|||..+.+|.+++++.++++++..+...++.++..||.++.++..+++.++..+.++.++++||++||+|+
T Consensus 1 E~mikrSF~qfq~~~~lP~~~~~~~~~e~~~~~i~~~~~~~v~~y~~l~~~l~~~~~~~~~~i~~p~~~~~fL~~GRlV~ 80 (268)
T PF13234_consen 1 EYMIKRSFSQFQNQRKLPELEKKLKELEEELDAIKIEDEEDVEEYYDLRQELEELRKELRKIITSPKYCLPFLQPGRLVV 80 (268)
T ss_dssp HHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHCS--TTCTCCHHHHHHHHHHHHHHHHHHHHHCTCCCHHHHS-TTEEEE
T ss_pred ChhHHHhHHHHcccccCHHHHHHHHHHHHHHHhcccccHhHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHhCCCCCEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccceeEEEEEeecCCCC--------------cceec---------------------C----CCCCeEEEeecCC
Q 002357 583 VREGGTDWGWGVVVNVVKKPSA--------------GVGTL---------------------P----SRGGGYIVPVQLP 623 (931)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~---------------------~----~~~~~~~~~~~~~ 623 (931)
|++++.+||||||+++.+..+. .|+|| | +.+.+.+++|+++
T Consensus 81 v~~~~~~~~wgvvv~~~~~~~~~~~~~~~~~~~~~~vVdvL~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~vv~v~l~ 160 (268)
T PF13234_consen 81 VRDGDRDFGWGVVVNFAKKSNPKGNLGSSSSKEKSYVVDVLLPCSPDSKSAKNSSDLPEPVKPCSPGEKGEMEVVPVPLS 160 (268)
T ss_dssp EEETTCEEEEEEEEEEEE---SS--TT-SSSTCCCEEEEEECCCEETTS-CCGTTTGGCTS-BS-TT--EEEEEEEEECC
T ss_pred EecCCCccceeEEEeccccccccccccccCCCCCcEEEEEEeeccccccccccccCCCCCCCCCCCCCCCeEEEEEeeHH
Confidence 9999999999999999865311 15554 1 2466789999999
Q ss_pred ccceeeeeeeecCCCCCChhHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCChHHHHHHHHHHHHHHHHHcCCCCCC-C
Q 002357 624 LISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKS-Q 702 (931)
Q Consensus 624 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~ 702 (931)
+|..||++++++|+++++...|+.+.+.|.++.++||+|+|.+||++||+|+|.++.++..+++.|++++.+||||.| +
T Consensus 161 ~I~~ISs~rl~lp~dl~~~~~r~~~~~~l~el~~r~~~giP~LDPi~DmkI~d~~~~e~~~k~~~Le~rl~~~~~~~~~~ 240 (268)
T PF13234_consen 161 CISSISSVRLKLPKDLRPQEARKQVLKSLQELLKRFPDGIPLLDPIKDMKIKDPEFVELVKKIEALEKRLSSHPLHKCPD 240 (268)
T ss_dssp GEEEEEEEE----TTTTSCCCHHHHHHHHHHHHHHSSS--TCHHCHHHH----HHHHHHHHHHHHHHHHHHHSCHCCSSS
T ss_pred HHHHhhceeeeCcccccchHHHHHHHHHHHHHHHhCCCCCCccChHHhCCCCcHHHHHHHHHHHHHHHHHHhCCCCCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002357 703 DENQIRCFQRKAEVNHEIQQLKSKMRD 729 (931)
Q Consensus 703 ~~~~~~~~~~~~~l~~~i~~l~~~~~~ 729 (931)
+++||..++++..|+++++.|+++|++
T Consensus 241 ~~~~~~~~~~k~~l~~~i~~Lk~~l~~ 267 (268)
T PF13234_consen 241 FEEHYALYHEKAELQEEIKALKRQLSD 267 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999986
No 71
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2.1e-31 Score=322.06 Aligned_cols=329 Identities=21% Similarity=0.270 Sum_probs=245.3
Q ss_pred chhhhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCC--CEEEEEcCchhhHHHHHHHHHHhc
Q 002357 66 NGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK--QRVIYTSPLKALSNQKYRELHQEF 143 (931)
Q Consensus 66 ~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~--~rvl~l~P~kaL~~Q~~~~l~~~~ 143 (931)
...+.+..+..|+++|.+|+..+.+|+||+|+.|||||||.+|++||+..+.++ .++||+.||+||++.+.++|+++.
T Consensus 60 ~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~ 139 (851)
T COG1205 60 KSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELI 139 (851)
T ss_pred HHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHH
Confidence 445555566669999999999999999999999999999999999999988554 467999999999999999998875
Q ss_pred C------CeEEEeccccc-------CCCCCeeEecHHHHHHHHhcCc----cccCcccEEEEeccccCCCCCchHHHHHH
Q 002357 144 K------DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGS----EVLKEVAWVIFDEIHYMKDRERGVVWEES 206 (931)
Q Consensus 144 ~------~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~----~~l~~l~~vViDEaH~l~~~~~g~~~~~i 206 (931)
. .++.++||+.. ...++|+++||++|..++.+.. ..++++++||+||+|..... +|..+--+
T Consensus 140 ~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv-~GS~vA~l 218 (851)
T COG1205 140 SDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGV-QGSEVALL 218 (851)
T ss_pred HhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecccc-chhHHHHH
Confidence 4 46678999874 3469999999999998765543 34678999999999988653 46666555
Q ss_pred HHh-------cCCCceEEEeccCCCChHHHHHHHHhhcCCCeEE-EecCCCCCcceeeeeccCCCceeEeeCccchhchh
Q 002357 207 IIF-------LPPAIKMVFLSATMSNATQFAEWICHLHKQPCHV-VYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFRED 278 (931)
Q Consensus 207 i~~-------l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v-~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (931)
++. .+.+.|+|+.|||+.|+.+++.-+... .... +..+..|....+++..... +. ....
T Consensus 219 lRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~---~f~~~v~~~g~~~~~~~~~~~~p~--~~--------~~~~ 285 (851)
T COG1205 219 LRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGR---DFEVPVDEDGSPRGLRYFVRREPP--IR--------ELAE 285 (851)
T ss_pred HHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCC---cceeeccCCCCCCCceEEEEeCCc--ch--------hhhh
Confidence 443 356899999999999999877655432 3333 5566666666665543221 00 0000
Q ss_pred hHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhcc----CCC
Q 002357 279 NFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSK----LDF 354 (931)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~----~~~ 354 (931)
. ...+.......++..+.. ++.++|+|+.|++.++.+...... .+
T Consensus 286 ~-----------------------------~r~s~~~~~~~~~~~~~~-~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~- 334 (851)
T COG1205 286 S-----------------------------IRRSALAELATLAALLVR-NGIQTLVFFRSRKQVELLYLSPRRRLVREG- 334 (851)
T ss_pred h-----------------------------cccchHHHHHHHHHHHHH-cCceEEEEEehhhhhhhhhhchhHHHhhcc-
Confidence 0 000112223334444433 567899999999999998744432 11
Q ss_pred CChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCC
Q 002357 355 NTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNM 434 (931)
Q Consensus 355 ~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdi 434 (931)
+.+..-|..|||++.+.+|..++..|++|.+.++++|+++..|||+
T Consensus 335 ----------------------------------~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Alelgidi 380 (851)
T COG1205 335 ----------------------------------GKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDI 380 (851)
T ss_pred ----------------------------------hhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceee
Confidence 0122237899999999999999999999999999999999999999
Q ss_pred CCcEEEEecceecCCCCCccc-CHHHHHHhhhccCCCCCCCceEEEEEeC
Q 002357 435 PAKTVVFTAVKKWDGDSHRYI-GSGEYIQMSGRAGRRGKDDRGICIIMVD 483 (931)
Q Consensus 435 p~~~vVI~~~~~~d~~~~~~~-s~~~y~Qr~GRaGR~G~~~~g~~ii~~~ 483 (931)
.+++.||+... |. +..++.||+|||||+++. +.++++..
T Consensus 381 G~ldavi~~g~--------P~~s~~~~~Q~~GRaGR~~~~--~l~~~v~~ 420 (851)
T COG1205 381 GSLDAVIAYGY--------PGVSVLSFRQRAGRAGRRGQE--SLVLVVLR 420 (851)
T ss_pred hhhhhHhhcCC--------CCchHHHHHHhhhhccCCCCC--ceEEEEeC
Confidence 99999985432 66 789999999999999953 45555443
No 72
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.1e-30 Score=298.76 Aligned_cols=365 Identities=19% Similarity=0.247 Sum_probs=232.4
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh--CCCEEEEEcCchhhHHHHHHHHHHhcC---CeEE
Q 002357 74 SFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR--DKQRVIYTSPLKALSNQKYRELHQEFK---DVGL 148 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~--~~~rvl~l~P~kaL~~Q~~~~l~~~~~---~vg~ 148 (931)
.++|++||.+.+...+ |+|++|++|||+|||.+|.+.+...++ ...+||+++|++-|++|+...+..++. ..+.
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T~~ 138 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSVTGQ 138 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCcccceee
Confidence 4569999999998888 999999999999999999999999884 568999999999999999977777663 3344
Q ss_pred EecccccCC------CCCeeEecHHHHHHHHhcCccc-cCcccEEEEeccccCCCCCchHHHH-HHHHhcCCCceEEEec
Q 002357 149 MTGDVTLSP------NASCLVMTTEILRGMLYRGSEV-LKEVAWVIFDEIHYMKDRERGVVWE-ESIIFLPPAIKMVFLS 220 (931)
Q Consensus 149 ~tGd~~~~~------~~~IlV~Tpe~L~~~l~~~~~~-l~~l~~vViDEaH~l~~~~~g~~~~-~ii~~l~~~~q~v~lS 220 (931)
.+|.++..+ ..+|+|+||+.+.+.|..+... +..+.++||||||+-....-...+. ..+..-....|+++||
T Consensus 139 l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLT 218 (746)
T KOG0354|consen 139 LGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLT 218 (746)
T ss_pred ccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEEEEe
Confidence 444343322 5799999999999999776533 5889999999999987543333333 4443333445999999
Q ss_pred cCCCChH-HHHHHHHhhcCCCeEEEec-------------CCCCCcce-----------eeeec----cCCCceeEeeCc
Q 002357 221 ATMSNAT-QFAEWICHLHKQPCHVVYT-------------DFRPTPLQ-----------HYVFP----VGGSGLYLVVDE 271 (931)
Q Consensus 221 AT~~n~~-e~~~~l~~~~~~~~~v~~~-------------~~rp~pl~-----------~~~~~----~~~~~~~~~~~~ 271 (931)
||+++.. +..+.+..+... ..+... ...|+++. .++-+ ....+++...+.
T Consensus 219 ASpG~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~ 297 (746)
T KOG0354|consen 219 ASPGSKLEQVQNVIDNLCAS-LDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDK 297 (746)
T ss_pred cCCCccHHHHHHHHHhhhee-cccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccccc
Confidence 9997554 455555544321 111000 01111110 00000 000111111111
Q ss_pred cchhch-----------------------hhHHH-HHHHHHhhhcC-----------CCc-CCCC-------C-------
Q 002357 272 KEQFRE-----------------------DNFVK-LQDTFLKQKIG-----------GRR-ENGK-------A------- 301 (931)
Q Consensus 272 ~~~~~~-----------------------~~~~~-~~~~l~~~~~~-----------~~~-~~~~-------~------- 301 (931)
...+.. ..+.. ....+...... .+. ..++ .
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~ 377 (746)
T KOG0354|consen 298 STSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFT 377 (746)
T ss_pred cccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHH
Confidence 100000 00000 00000000000 000 0000 0
Q ss_pred -----CCCccCCCCCCCCCCHHHHHHHHHHc----CCCcEEEEecCHHHHHHHHHHhcc---CCCCChHHHHHHHHHHHH
Q 002357 302 -----SGRMAKGGSGSGGSDIFKIVKMIMER----KFQPVIVFSFSRRECEQHAMSMSK---LDFNTQEEKDTVEQVFQN 369 (931)
Q Consensus 302 -----~~~~~~~~~~~~~~~~~~ll~~l~~~----~~~~~IVF~~sr~~~~~la~~L~~---~~~~~~~e~~~i~~~~~~ 369 (931)
...... ......+++..+.+.+.+. ...++||||.+|..++.+...|.+ .+..+.
T Consensus 378 ~~m~~~~~l~~-~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~------------ 444 (746)
T KOG0354|consen 378 ENMNELEHLSL-DPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAE------------ 444 (746)
T ss_pred HHHHhhhhhhc-CCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccc------------
Confidence 000000 1112456677777766543 567899999999999999999874 111110
Q ss_pred HHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCC
Q 002357 370 AVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDG 449 (931)
Q Consensus 370 ~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~ 449 (931)
-+...|-+.-..||++.+...+++.|++|.++|||||+++++|+|+|.+++|| .||.
T Consensus 445 -------------------~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVI----cYd~ 501 (746)
T KOG0354|consen 445 -------------------IFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVI----CYDY 501 (746)
T ss_pred -------------------eeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEE----EecC
Confidence 00011112223689999999999999999999999999999999999999999 8888
Q ss_pred CCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCC
Q 002357 450 DSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDE 484 (931)
Q Consensus 450 ~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~ 484 (931)
..++...+||.|| ||+.. |.++++.+.
T Consensus 502 ----~snpIrmIQrrGR-gRa~n---s~~vll~t~ 528 (746)
T KOG0354|consen 502 ----SSNPIRMVQRRGR-GRARN---SKCVLLTTG 528 (746)
T ss_pred ----CccHHHHHHHhcc-ccccC---CeEEEEEcc
Confidence 5678999999999 99876 888888883
No 73
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.98 E-value=1e-30 Score=292.12 Aligned_cols=285 Identities=18% Similarity=0.202 Sum_probs=190.3
Q ss_pred HHHHHHHHHhcCCc--EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC--------CeEEE
Q 002357 80 FQRVSVACLERNES--VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK--------DVGLM 149 (931)
Q Consensus 80 ~Q~~ai~~l~~g~~--vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~--------~vg~~ 149 (931)
+|.++++++.++.+ ++++||||||||.+|+++++. .+.+++|++|+++|++|+++.+++++. .+..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~---~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~ 77 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH---GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHV 77 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH---cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEe
Confidence 59999999987764 789999999999999988874 456899999999999999999999872 34556
Q ss_pred eccccc---------------------------CCCCCeeEecHHHHHHHHhcC---c-----cccCcccEEEEeccccC
Q 002357 150 TGDVTL---------------------------SPNASCLVMTTEILRGMLYRG---S-----EVLKEVAWVIFDEIHYM 194 (931)
Q Consensus 150 tGd~~~---------------------------~~~~~IlV~Tpe~L~~~l~~~---~-----~~l~~l~~vViDEaH~l 194 (931)
+|+... ...+.|+++||++|..++.+. . ..+..+++|||||+|.+
T Consensus 78 ~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~ 157 (357)
T TIGR03158 78 SKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLY 157 (357)
T ss_pred cCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEeccccc
Confidence 665211 124678889999998665431 1 13578999999999998
Q ss_pred CCCCchHH-----HHHHHHhcCCCceEEEeccCCCChHHHHHHHHhh--cCCCeEEEecC------------------CC
Q 002357 195 KDRERGVV-----WEESIIFLPPAIKMVFLSATMSNATQFAEWICHL--HKQPCHVVYTD------------------FR 249 (931)
Q Consensus 195 ~~~~~g~~-----~~~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~~--~~~~~~v~~~~------------------~r 249 (931)
..+..... ...++.......+++++|||++.. +.+++... .+.++.++... +|
T Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~--~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~ 235 (357)
T TIGR03158 158 DAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPA--LILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFR 235 (357)
T ss_pred CcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHH--HHHHHHhccccCceeeeecCcccccCCChhhhccccccccc
Confidence 75433222 223333344468999999999743 44555433 23333222221 01
Q ss_pred CC--cceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHc
Q 002357 250 PT--PLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMER 327 (931)
Q Consensus 250 p~--pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 327 (931)
|+ ++.+.+. . ...+........ ...+.+.+.+.
T Consensus 236 ~~~~~i~~~~~----------~--~~~~~~~~l~~l---------------------------------~~~i~~~~~~~ 270 (357)
T TIGR03158 236 PVLPPVELELI----------P--APDFKEEELSEL---------------------------------AEEVIERFRQL 270 (357)
T ss_pred eeccceEEEEE----------e--CCchhHHHHHHH---------------------------------HHHHHHHHhcc
Confidence 11 1111110 0 000100000000 01122222233
Q ss_pred CCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHH
Q 002357 328 KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK 407 (931)
Q Consensus 328 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R 407 (931)
.+.++||||+|++.|+.++..|.+.+... .+..+||.+++..|
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~-------------------------------------~~~~l~g~~~~~~R 313 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGD-------------------------------------DIGRITGFAPKKDR 313 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCc-------------------------------------eEEeeecCCCHHHH
Confidence 56789999999999999999998643321 15679999999998
Q ss_pred HHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccC
Q 002357 408 ELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAG 468 (931)
Q Consensus 408 ~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaG 468 (931)
+.+ +..+|||||+++++|||+|...+|+ . |.+..+|+||+||+|
T Consensus 314 ~~~------~~~~iLVaTdv~~rGiDi~~~~vi~-~----------p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 314 ERA------MQFDILLGTSTVDVGVDFKRDWLIF-S----------ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHh------ccCCEEEEecHHhcccCCCCceEEE-C----------CCCHHHHhhhcccCC
Confidence 754 4789999999999999999875443 1 557889999999998
No 74
>PRK13766 Hef nuclease; Provisional
Probab=99.98 E-value=2.7e-30 Score=319.66 Aligned_cols=367 Identities=20% Similarity=0.240 Sum_probs=235.2
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh-CCCEEEEEcCchhhHHHHHHHHHHhcC----CeE
Q 002357 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQEFK----DVG 147 (931)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~-~~~rvl~l~P~kaL~~Q~~~~l~~~~~----~vg 147 (931)
..+++++||.+++..+..+ +++|++|||+|||++|.+++...+. .+.++||++||++|++|+.+.++..++ .+.
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~ 90 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIV 90 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEE
Confidence 4568999999999887776 8999999999999999888877663 578999999999999999999998875 577
Q ss_pred EEecccccC------CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEecc
Q 002357 148 LMTGDVTLS------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSA 221 (931)
Q Consensus 148 ~~tGd~~~~------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSA 221 (931)
.++|+.+.. .+++|+|+||+.+.+.+..+...+.++++|||||||++........+........+..++++|||
T Consensus 91 ~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTa 170 (773)
T PRK13766 91 VFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTA 170 (773)
T ss_pred EEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEc
Confidence 888887542 36799999999999887777777889999999999998754333323333334455678999999
Q ss_pred CCCCh-HHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeE-----------------------------eeCc
Q 002357 222 TMSNA-TQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYL-----------------------------VVDE 271 (931)
Q Consensus 222 T~~n~-~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~-----------------------------~~~~ 271 (931)
|+... ..+...+.......+.+. +...+ .+..++.......+.. ....
T Consensus 171 TP~~~~~~i~~~~~~L~i~~v~~~-~~~~~-~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~ 248 (773)
T PRK13766 171 SPGSDEEKIKEVCENLGIEHVEVR-TEDDP-DVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSI 248 (773)
T ss_pred CCCCCHHHHHHHHHhCCceEEEEc-CCCCh-hHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccC
Confidence 98543 334444444332222221 11111 0111110000000000 0000
Q ss_pred cchhchhhHHHHHHHHHhh------------------------------------------hcCCCcCCCCCCC------
Q 002357 272 KEQFREDNFVKLQDTFLKQ------------------------------------------KIGGRRENGKASG------ 303 (931)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~~------------------------------------------~~~~~~~~~~~~~------ 303 (931)
........+......+... ..... ...+...
T Consensus 249 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~-~~~~~~~~~~~l~ 327 (773)
T PRK13766 249 SPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEA-RSSGGSKASKRLV 327 (773)
T ss_pred CCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhc-cccCCcHHHHHHH
Confidence 0000000000000000000 00000 0000000
Q ss_pred ---Cc---c-C-CCCCCCCCCHHHHHHHHHH----cCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHH
Q 002357 304 ---RM---A-K-GGSGSGGSDIFKIVKMIME----RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAV 371 (931)
Q Consensus 304 ---~~---~-~-~~~~~~~~~~~~ll~~l~~----~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~ 371 (931)
.. . . .......+++..+.+.+.+ .+..++||||.+++.|+.++..|...++....
T Consensus 328 ~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~------------- 394 (773)
T PRK13766 328 EDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVR------------- 394 (773)
T ss_pred hCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEE-------------
Confidence 00 0 0 0001223455555555543 46789999999999999999999776654310
Q ss_pred hhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCC
Q 002357 372 DCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDS 451 (931)
Q Consensus 372 ~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~ 451 (931)
+.. .+...-|+||++.+|..++..|++|.++|||||+++++|+|+|++++|| .||+
T Consensus 395 --~~g----------------~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI----~yd~-- 450 (773)
T PRK13766 395 --FVG----------------QASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVI----FYEP-- 450 (773)
T ss_pred --EEc----------------cccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEE----EeCC--
Confidence 000 0000124569999999999999999999999999999999999999999 7887
Q ss_pred CcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 452 HRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 452 ~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
+.++..|+||+||+||.|. |.+++++.+.
T Consensus 451 --~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~ 479 (773)
T PRK13766 451 --VPSEIRSIQRKGRTGRQEE---GRVVVLIAKG 479 (773)
T ss_pred --CCCHHHHHHHhcccCcCCC---CEEEEEEeCC
Confidence 8899999999999999876 6677776554
No 75
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=3.3e-30 Score=301.60 Aligned_cols=331 Identities=14% Similarity=0.100 Sum_probs=215.3
Q ss_pred cCCCCCCHHHHHHHHHHh-cC--CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC----
Q 002357 72 TYSFELDPFQRVSVACLE-RN--ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK---- 144 (931)
Q Consensus 72 ~~~f~l~~~Q~~ai~~l~-~g--~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~---- 144 (931)
+..++|+|||.+|+..+. +| ++.++++|||+|||++++.++... +.++||+||+..|+.||.++|.+++.
T Consensus 251 ~~~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l---~k~tLILvps~~Lv~QW~~ef~~~~~l~~~ 327 (732)
T TIGR00603 251 KPTTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV---KKSCLVLCTSAVSVEQWKQQFKMWSTIDDS 327 (732)
T ss_pred ccCCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh---CCCEEEEeCcHHHHHHHHHHHHHhcCCCCc
Confidence 345789999999998875 34 478999999999999987766543 57899999999999999999999863
Q ss_pred CeEEEecccccC--CCCCeeEecHHHHHHHHhcCc------ccc--CcccEEEEeccccCCCCCchHHHHHHHHhcCCCc
Q 002357 145 DVGLMTGDVTLS--PNASCLVMTTEILRGMLYRGS------EVL--KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAI 214 (931)
Q Consensus 145 ~vg~~tGd~~~~--~~~~IlV~Tpe~L~~~l~~~~------~~l--~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~ 214 (931)
.++.++|+.... ...+|+|+|++++.+...+.. ..+ ..+++||+||||++. ...+..++..+.. .
T Consensus 328 ~I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp----A~~fr~il~~l~a-~ 402 (732)
T TIGR00603 328 QICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP----AAMFRRVLTIVQA-H 402 (732)
T ss_pred eEEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc----HHHHHHHHHhcCc-C
Confidence 577888875432 247899999998864332211 112 468999999999996 4556666666653 4
Q ss_pred eEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCC
Q 002357 215 KMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGG 294 (931)
Q Consensus 215 q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 294 (931)
..++||||+....+....+....+..++-. +....--..++-+... ....++.... .+...... ....
T Consensus 403 ~RLGLTATP~ReD~~~~~L~~LiGP~vye~--~~~eLi~~G~LA~~~~--~ev~v~~t~~----~~~~yl~~-~~~~--- 470 (732)
T TIGR00603 403 CKLGLTATLVREDDKITDLNFLIGPKLYEA--NWMELQKKGFIANVQC--AEVWCPMTPE----FYREYLRE-NSRK--- 470 (732)
T ss_pred cEEEEeecCcccCCchhhhhhhcCCeeeec--CHHHHHhCCccccceE--EEEEecCCHH----HHHHHHHh-cchh---
Confidence 579999999643321122332223222111 1000000111111100 0111111111 11111100 0000
Q ss_pred CcCCCCCCCCccCCCCCCCCCCHHHHHHHHHH--cCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHh
Q 002357 295 RRENGKASGRMAKGGSGSGGSDIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVD 372 (931)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~ 372 (931)
...-...+..++..+...+.. ..+.++||||.+...++.++..|.
T Consensus 471 -----------k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~---------------------- 517 (732)
T TIGR00603 471 -----------RMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG---------------------- 517 (732)
T ss_pred -----------hhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC----------------------
Confidence 000000111222222222222 366799999999999988888763
Q ss_pred hcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcC-CceEEEecchhhcccCCCCcEEEEecceecCCCC
Q 002357 373 CLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEG-LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDS 451 (931)
Q Consensus 373 ~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g-~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~ 451 (931)
+.++||++++.+|+.+++.|++| .+++||+|+++++|||+|++++|| .+++
T Consensus 518 ----------------------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI----~~s~-- 569 (732)
T TIGR00603 518 ----------------------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLI----QISS-- 569 (732)
T ss_pred ----------------------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEE----EeCC--
Confidence 25689999999999999999975 889999999999999999999999 5554
Q ss_pred Ccc-cCHHHHHHhhhccCCCCCCCc-----eEEEEEeCCc
Q 002357 452 HRY-IGSGEYIQMSGRAGRRGKDDR-----GICIIMVDEQ 485 (931)
Q Consensus 452 ~~~-~s~~~y~Qr~GRaGR~G~~~~-----g~~ii~~~~~ 485 (931)
| -|..+|+||+||++|.+..+. +..+.+++..
T Consensus 570 --~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~d 607 (732)
T TIGR00603 570 --HYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKD 607 (732)
T ss_pred --CCCCHHHHHHHhcccccCCCCCccccccceEEEEecCC
Confidence 4 488999999999999987655 3446666654
No 76
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=9.9e-32 Score=264.05 Aligned_cols=297 Identities=21% Similarity=0.296 Sum_probs=223.4
Q ss_pred CChhhhccccCCCCCchhhhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC---CCEEEEEc
Q 002357 51 TKDEAIHGTFANPVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTS 126 (931)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~---~~rvl~l~ 126 (931)
++|++++.+.+ .||+ |+.+|.++||...-|.+|+++|..|.|||.+|.++-++.+.+ ...++++|
T Consensus 49 lkpellraivd-----------cgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmc 117 (387)
T KOG0329|consen 49 LKPELLRAIVD-----------CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMC 117 (387)
T ss_pred cCHHHHHHHHh-----------ccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEe
Confidence 56666665554 6898 999999999999999999999999999999999999988854 35789999
Q ss_pred CchhhHHHHHHH---HHHhcC--CeEEEecccccCC-------CCCeeEecHHHHHHHHhcCccccCcccEEEEeccccC
Q 002357 127 PLKALSNQKYRE---LHQEFK--DVGLMTGDVTLSP-------NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYM 194 (931)
Q Consensus 127 P~kaL~~Q~~~~---l~~~~~--~vg~~tGd~~~~~-------~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l 194 (931)
.||+|+-|+.++ |.++.+ .+.+..|+.++.. -++|+|+||+++..+.......++++..+|+|||+.|
T Consensus 118 htrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkm 197 (387)
T KOG0329|consen 118 HTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKM 197 (387)
T ss_pred ccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHH
Confidence 999999999554 556666 5788999998754 4799999999999999888889999999999999988
Q ss_pred CCC-CchHHHHHHHHhcCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccc
Q 002357 195 KDR-ERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKE 273 (931)
Q Consensus 195 ~~~-~~g~~~~~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~ 273 (931)
+.. +......++..+.|...|+.++|||+++.. .-....+.++|..++..+.....+
T Consensus 198 le~lDMrRDvQEifr~tp~~KQvmmfsatlskei--RpvC~kFmQdPmEi~vDdE~KLtL-------------------- 255 (387)
T KOG0329|consen 198 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEI--RPVCHKFMQDPMEIFVDDEAKLTL-------------------- 255 (387)
T ss_pred HHHHHHHHHHHHHhhcCcccceeeeeeeecchhh--HHHHHhhhcCchhhhccchhhhhh--------------------
Confidence 632 335567788999999999999999998543 344445555565555544322211
Q ss_pred hhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCC
Q 002357 274 QFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLD 353 (931)
Q Consensus 274 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~ 353 (931)
-.+...+-.++.. .++.++..+++.+ ...+++||+.|.....
T Consensus 256 ----HGLqQ~YvkLke~---------------------eKNrkl~dLLd~L---eFNQVvIFvKsv~Rl~---------- 297 (387)
T KOG0329|consen 256 ----HGLQQYYVKLKEN---------------------EKNRKLNDLLDVL---EFNQVVIFVKSVQRLS---------- 297 (387)
T ss_pred ----hhHHHHHHhhhhh---------------------hhhhhhhhhhhhh---hhcceeEeeehhhhhh----------
Confidence 1111111111111 1122344444444 4568999998855410
Q ss_pred CCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccC
Q 002357 354 FNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLN 433 (931)
Q Consensus 354 ~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GId 433 (931)
| ..+ ||||+.+++|+|
T Consensus 298 ------------------------------------------------------------f---~kr-~vat~lfgrgmd 313 (387)
T KOG0329|consen 298 ------------------------------------------------------------F---QKR-LVATDLFGRGMD 313 (387)
T ss_pred ------------------------------------------------------------h---hhh-hHHhhhhccccC
Confidence 2 114 899999999999
Q ss_pred CCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHH
Q 002357 434 MPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLK 492 (931)
Q Consensus 434 ip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~ 492 (931)
+..++.|| +||. |-++.+|.||+|||||.|. +|.+|.+++...+...+.
T Consensus 314 iervNi~~----NYdm----p~~~DtYlHrv~rAgrfGt--kglaitfvs~e~da~iLn 362 (387)
T KOG0329|consen 314 IERVNIVF----NYDM----PEDSDTYLHRVARAGRFGT--KGLAITFVSDENDAKILN 362 (387)
T ss_pred cccceeee----ccCC----CCCchHHHHHhhhhhcccc--ccceeehhcchhhHHHhc
Confidence 99999999 8999 8999999999999999997 588888887664444333
No 77
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=3.9e-30 Score=269.45 Aligned_cols=342 Identities=22% Similarity=0.256 Sum_probs=230.6
Q ss_pred chhhhccCCCC--CCHHHHHHHHHH-hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHh
Q 002357 66 NGEMAKTYSFE--LDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 66 ~~~~~~~~~f~--l~~~Q~~ai~~l-~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
...+.+.|||. -++.|.+|+.++ ..+++|.|+.|||+||++||.+|.+.+ +..+||++|..||+.++.+.+..+
T Consensus 8 reaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---~gITIV~SPLiALIkDQiDHL~~L 84 (641)
T KOG0352|consen 8 REALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---GGITIVISPLIALIKDQIDHLKRL 84 (641)
T ss_pred HHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---CCeEEEehHHHHHHHHHHHHHHhc
Confidence 34566788887 489999999988 455799999999999999999998765 669999999999999999999887
Q ss_pred cCCeEEEecccc-------------cCCCCCeeEecHHHHHHHHh----cCccccCcccEEEEeccccCCCCCch--HHH
Q 002357 143 FKDVGLMTGDVT-------------LSPNASCLVMTTEILRGMLY----RGSEVLKEVAWVIFDEIHYMKDRERG--VVW 203 (931)
Q Consensus 143 ~~~vg~~tGd~~-------------~~~~~~IlV~Tpe~L~~~l~----~~~~~l~~l~~vViDEaH~l~~~~~g--~~~ 203 (931)
--.+.-+.+..+ ..++..++..|||....... ++-..-+-+.|+|+||||+++.|+.. +.+
T Consensus 85 KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDY 164 (641)
T KOG0352|consen 85 KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDY 164 (641)
T ss_pred CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcch
Confidence 544333333222 24567899999987542211 11112345789999999999988533 222
Q ss_pred HHH--HHhcCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHH
Q 002357 204 EES--IIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFV 281 (931)
Q Consensus 204 ~~i--i~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (931)
-.+ ++..-+++.-+.||||.+....-.-+......+|+.++.+..-... ++.-+..+ .+..+.|.
T Consensus 165 L~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~N------------LFYD~~~K-~~I~D~~~ 231 (641)
T KOG0352|consen 165 LTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDN------------LFYDNHMK-SFITDCLT 231 (641)
T ss_pred hhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhh------------hhHHHHHH-HHhhhHhH
Confidence 221 2222247889999999865443222222233456655544211110 11000000 00001111
Q ss_pred HHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHH
Q 002357 282 KLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKD 361 (931)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~ 361 (931)
.+.+...+..+.... ...-.+.-.+-.||||.||..|+.+|-.|...|+++
T Consensus 232 ~LaDF~~~~LG~~~~------------------------~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A----- 282 (641)
T KOG0352|consen 232 VLADFSSSNLGKHEK------------------------ASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPA----- 282 (641)
T ss_pred hHHHHHHHhcCChhh------------------------hhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcch-----
Confidence 111100000000000 000000122457999999999999999998888764
Q ss_pred HHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEE
Q 002357 362 TVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVF 441 (931)
Q Consensus 362 ~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI 441 (931)
..+|+||...+|..|.+.+.+|++.|++||..|+||+|-|++..||
T Consensus 283 ----------------------------------~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFVi 328 (641)
T KOG0352|consen 283 ----------------------------------MAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVI 328 (641)
T ss_pred ----------------------------------HHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEE
Confidence 4689999999999999999999999999999999999999999999
Q ss_pred ecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhhc
Q 002357 442 TAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLE 497 (931)
Q Consensus 442 ~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~~ 497 (931)
+||. +.+..-|.|-+|||||.|.. ..|-+++... +.+.+.=++++
T Consensus 329 ----HW~~----~qn~AgYYQESGRAGRDGk~--SyCRLYYsR~-D~~~i~FLi~~ 373 (641)
T KOG0352|consen 329 ----HWSP----SQNLAGYYQESGRAGRDGKR--SYCRLYYSRQ-DKNALNFLVSG 373 (641)
T ss_pred ----ecCc----hhhhHHHHHhccccccCCCc--cceeeeeccc-chHHHHHHHhh
Confidence 8999 88999999999999999984 7788877654 55555544444
No 78
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=1.4e-30 Score=311.89 Aligned_cols=328 Identities=21% Similarity=0.298 Sum_probs=249.0
Q ss_pred CchhhhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhc
Q 002357 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEF 143 (931)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~ 143 (931)
....+...|++. ++|.|.+||..++.|++++|..|||+||++||.+|.+.. ++-+|||+|..+|++.+...+....
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~---~gitvVISPL~SLm~DQv~~L~~~~ 328 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL---GGVTVVISPLISLMQDQVTHLSKKG 328 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc---CCceEEeccHHHHHHHHHHhhhhcC
Confidence 445666788888 999999999999999999999999999999999987765 6699999999999999999996665
Q ss_pred CCeEEEeccccc-------------CCCCCeeEecHHHHHHH--HhcCccccCc---ccEEEEeccccCCCCC--chHHH
Q 002357 144 KDVGLMTGDVTL-------------SPNASCLVMTTEILRGM--LYRGSEVLKE---VAWVIFDEIHYMKDRE--RGVVW 203 (931)
Q Consensus 144 ~~vg~~tGd~~~-------------~~~~~IlV~Tpe~L~~~--l~~~~~~l~~---l~~vViDEaH~l~~~~--~g~~~ 203 (931)
-....++++... ++..+|+..|||.+... +......+.. +.++|+||||+++.|+ |.+.+
T Consensus 329 I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Y 408 (941)
T KOG0351|consen 329 IPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSY 408 (941)
T ss_pred cceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHH
Confidence 566667766543 23578999999987632 2222222344 8999999999999874 33333
Q ss_pred HHHH---HhcCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhH
Q 002357 204 EESI---IFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNF 280 (931)
Q Consensus 204 ~~ii---~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (931)
..+- +..+ .+.+++||||...... .+.+..+.-..+.++...+.+..+...+.+...
T Consensus 409 k~l~~l~~~~~-~vP~iALTATAT~~v~-~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~------------------ 468 (941)
T KOG0351|consen 409 KRLGLLRIRFP-GVPFIALTATATERVR-EDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTD------------------ 468 (941)
T ss_pred HHHHHHHhhCC-CCCeEEeehhccHHHH-HHHHHHhCCCCcceecccCCCCCceEEEEeccC------------------
Confidence 3322 2233 4899999999854431 233444444455566666655554433322110
Q ss_pred HHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHH-cCCCcEEEEecCHHHHHHHHHHhccCCCCChHH
Q 002357 281 VKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME-RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEE 359 (931)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e 359 (931)
......++..+.. ....++||||.+|+.|+.++..|.+.++.+
T Consensus 469 ---------------------------------~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a--- 512 (941)
T KOG0351|consen 469 ---------------------------------KDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSA--- 512 (941)
T ss_pred ---------------------------------ccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhh---
Confidence 0111222233322 356789999999999999999999877543
Q ss_pred HHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEE
Q 002357 360 KDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTV 439 (931)
Q Consensus 360 ~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~v 439 (931)
+.+|+||++.+|+.|...|..++++|++||=+|+||||.|++..
T Consensus 513 ------------------------------------~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ 556 (941)
T KOG0351|consen 513 ------------------------------------AFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRF 556 (941)
T ss_pred ------------------------------------HhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeE
Confidence 68999999999999999999999999999999999999999999
Q ss_pred EEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhhcc
Q 002357 440 VFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLEG 498 (931)
Q Consensus 440 VI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~~~ 498 (931)
|| +|.. |-+.+.|.|-+|||||.|.. ..|+++++.. +...++.++...
T Consensus 557 Vi----H~~l----Pks~E~YYQE~GRAGRDG~~--s~C~l~y~~~-D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 557 VI----HYSL----PKSFEGYYQEAGRAGRDGLP--SSCVLLYGYA-DISELRRLLTSG 604 (941)
T ss_pred EE----ECCC----chhHHHHHHhccccCcCCCc--ceeEEecchh-HHHHHHHHHHcc
Confidence 99 7777 99999999999999999985 7899988876 777777777654
No 79
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.97 E-value=7.5e-30 Score=318.19 Aligned_cols=271 Identities=16% Similarity=0.150 Sum_probs=186.6
Q ss_pred hhhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHH-HhCCCEEEEEcCchhhHHHHHHHHHHhcCC-
Q 002357 68 EMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPLKALSNQKYRELHQEFKD- 145 (931)
Q Consensus 68 ~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~-l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~- 145 (931)
-+....+++|+++|+.+++.+..|++++++||||+|||+ |.++++.. ...+.+++|++||++|+.|+++.++.++..
T Consensus 70 ~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~ 148 (1171)
T TIGR01054 70 FFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKA 148 (1171)
T ss_pred HHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhc
Confidence 344567889999999999999999999999999999997 44444443 356789999999999999999999988652
Q ss_pred ------eEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCC-----------
Q 002357 146 ------VGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDR----------- 197 (931)
Q Consensus 146 ------vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~----------- 197 (931)
++.++|+.+. +.+++|+|+||++|...+.+.. .+++++|+||||.|.+.
T Consensus 149 ~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~---~~~~~iVvDEaD~~L~~~k~vd~il~ll 225 (1171)
T TIGR01054 149 GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG---PKFDFIFVDDVDALLKASKNVDKLLKLL 225 (1171)
T ss_pred CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc---CCCCEEEEeChHhhhhccccHHHHHHHc
Confidence 3457787643 2358999999999987765422 18999999999999984
Q ss_pred CchH-HHHHH----------------------HHhcCCCce--EEEeccCC-CChHHHHHHHHhhcCCCeEEEecCCCCC
Q 002357 198 ERGV-VWEES----------------------IIFLPPAIK--MVFLSATM-SNATQFAEWICHLHKQPCHVVYTDFRPT 251 (931)
Q Consensus 198 ~~g~-~~~~i----------------------i~~l~~~~q--~v~lSAT~-~n~~e~~~~l~~~~~~~~~v~~~~~rp~ 251 (931)
+|.. .++.+ +..+++..| ++++|||. |.... ..++. ....+...... .
T Consensus 226 GF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~-~~l~r----~ll~~~v~~~~-~ 299 (1171)
T TIGR01054 226 GFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR-AKLFR----ELLGFEVGGGS-D 299 (1171)
T ss_pred CCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH-HHHcc----cccceEecCcc-c
Confidence 3433 22332 223455545 67789994 43221 01111 11111111111 1
Q ss_pred cceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCc
Q 002357 252 PLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQP 331 (931)
Q Consensus 252 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 331 (931)
.+.+.. +.+...+. ....++..+... +.+
T Consensus 300 ~~r~I~------~~~~~~~~--------------------------------------------~~~~L~~ll~~l-~~~ 328 (1171)
T TIGR01054 300 TLRNVV------DVYVEDED--------------------------------------------LKETLLEIVKKL-GTG 328 (1171)
T ss_pred cccceE------EEEEeccc--------------------------------------------HHHHHHHHHHHc-CCC
Confidence 111100 11110000 011233333332 357
Q ss_pred EEEEecCH---HHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHH
Q 002357 332 VIVFSFSR---RECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKE 408 (931)
Q Consensus 332 ~IVF~~sr---~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~ 408 (931)
+||||+++ +.|+.++..|.+.|+. +..+||+++ +
T Consensus 329 ~IVFv~t~~~~~~a~~l~~~L~~~g~~---------------------------------------a~~lhg~~~----~ 365 (1171)
T TIGR01054 329 GIVYVSIDYGKEKAEEIAEFLENHGVK---------------------------------------AVAYHATKP----K 365 (1171)
T ss_pred EEEEEeccccHHHHHHHHHHHHhCCce---------------------------------------EEEEeCCCC----H
Confidence 99999999 9999999999887765 578999997 3
Q ss_pred HHHHHHhcCCceEEEe----cchhhcccCCCC-cEEEEe
Q 002357 409 LVELLFQEGLVKALFA----TETFAMGLNMPA-KTVVFT 442 (931)
Q Consensus 409 ~v~~~F~~g~i~vLva----T~~la~GIdip~-~~vVI~ 442 (931)
.+++.|++|+++|||| |++++||||+|+ +++||+
T Consensus 366 ~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~ 404 (1171)
T TIGR01054 366 EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVF 404 (1171)
T ss_pred HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEE
Confidence 6889999999999999 589999999999 788885
No 80
>PRK14701 reverse gyrase; Provisional
Probab=99.97 E-value=7.8e-30 Score=323.43 Aligned_cols=304 Identities=14% Similarity=0.108 Sum_probs=212.9
Q ss_pred hhhhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC--
Q 002357 67 GEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-- 144 (931)
Q Consensus 67 ~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-- 144 (931)
.-+...+||+|+++|+++++.+.+|+++++.||||+|||++++.+.+....++.+++|++||++|+.|+++.++.++.
T Consensus 70 ~~f~~~~G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~ 149 (1638)
T PRK14701 70 EFFEKITGFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKA 149 (1638)
T ss_pred HHHHHhhCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 344456899999999999999999999999999999999976665554445788999999999999999999998754
Q ss_pred ----CeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCC-----------C
Q 002357 145 ----DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDR-----------E 198 (931)
Q Consensus 145 ----~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~-----------~ 198 (931)
.+..++|+.+. +.+++|+|+||+.|.+.+.... ..+++++|+||||+|+++ +
T Consensus 150 ~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~--~~~i~~iVVDEAD~ml~~~knid~~L~llG 227 (1638)
T PRK14701 150 NLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK--HLKFDFIFVDDVDAFLKASKNIDRSLQLLG 227 (1638)
T ss_pred CCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh--hCCCCEEEEECceeccccccccchhhhcCC
Confidence 34557787653 2358999999999887654321 267999999999999864 4
Q ss_pred chHHHHH----HHH----------------------hcCCCce-EEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCC
Q 002357 199 RGVVWEE----SII----------------------FLPPAIK-MVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPT 251 (931)
Q Consensus 199 ~g~~~~~----ii~----------------------~l~~~~q-~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~ 251 (931)
|...+.. ++. .+++..| ++++|||.+...+...++. .+..+.....+++
T Consensus 228 F~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~----~~l~f~v~~~~~~ 303 (1638)
T PRK14701 228 FYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYR----ELLGFEVGSGRSA 303 (1638)
T ss_pred ChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhh----cCeEEEecCCCCC
Confidence 4444432 221 2345555 6779999986544444432 2333333333322
Q ss_pred cceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCc
Q 002357 252 PLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQP 331 (931)
Q Consensus 252 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 331 (931)
+... .+.+...+.. ....++..+... +..
T Consensus 304 -lr~i------~~~yi~~~~~-------------------------------------------~k~~L~~ll~~~-g~~ 332 (1638)
T PRK14701 304 -LRNI------VDVYLNPEKI-------------------------------------------IKEHVRELLKKL-GKG 332 (1638)
T ss_pred -CCCc------EEEEEECCHH-------------------------------------------HHHHHHHHHHhC-CCC
Confidence 1110 0111111110 001233333333 467
Q ss_pred EEEEecCHHH---HHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHH
Q 002357 332 VIVFSFSRRE---CEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKE 408 (931)
Q Consensus 332 ~IVF~~sr~~---~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~ 408 (931)
+||||+|++. |+.++..|...|+. +..+||+ |.
T Consensus 333 gIVF~~t~~~~e~ae~la~~L~~~Gi~---------------------------------------a~~~h~~-----R~ 368 (1638)
T PRK14701 333 GLIFVPIDEGAEKAEEIEKYLLEDGFK---------------------------------------IELVSAK-----NK 368 (1638)
T ss_pred eEEEEeccccchHHHHHHHHHHHCCCe---------------------------------------EEEecch-----HH
Confidence 9999999886 58999999887776 4778985 88
Q ss_pred HHHHHHhcCCceEEEec----chhhcccCCCC-cEEEEecceecCCCCCcccCHHHHHH-------------hhhccCCC
Q 002357 409 LVELLFQEGLVKALFAT----ETFAMGLNMPA-KTVVFTAVKKWDGDSHRYIGSGEYIQ-------------MSGRAGRR 470 (931)
Q Consensus 409 ~v~~~F~~g~i~vLvaT----~~la~GIdip~-~~vVI~~~~~~d~~~~~~~s~~~y~Q-------------r~GRaGR~ 470 (931)
.+++.|++|+++||||| ++++||||+|+ +.+|| +||...++ .+.+.|.| +.|||||.
T Consensus 369 ~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi----~~~~Pk~~-~~~e~~~~~~~~~~~~~~~~~~~~~a~~~ 443 (1638)
T PRK14701 369 KGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAV----FYGVPKFR-FRVDLEDPTIYRILGLLSEILKIEEELKE 443 (1638)
T ss_pred HHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEE----EeCCCCCC-cchhhcccchhhhhcchHHHHHhhhhccc
Confidence 99999999999999999 48999999999 89998 66664322 24444444 45999999
Q ss_pred CCCCce
Q 002357 471 GKDDRG 476 (931)
Q Consensus 471 G~~~~g 476 (931)
|....+
T Consensus 444 g~~~~~ 449 (1638)
T PRK14701 444 GIPIEG 449 (1638)
T ss_pred CCcchh
Confidence 975443
No 81
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.97 E-value=4.6e-29 Score=305.37 Aligned_cols=315 Identities=22% Similarity=0.284 Sum_probs=216.8
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHH-HHHHHhCC--CEEEEEcCc----hhhHHHHHHHHHHhcC-CeEE
Q 002357 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYA-IAMAFRDK--QRVIYTSPL----KALSNQKYRELHQEFK-DVGL 148 (931)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~-i~~~l~~~--~rvl~l~P~----kaL~~Q~~~~l~~~~~-~vg~ 148 (931)
.+.+-.+.+.++..++.++|+|+||||||.. +| ++.....+ .+++++.|. ++|+.|+.+++....+ .||+
T Consensus 75 i~~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY 152 (1294)
T PRK11131 75 VSQKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGY 152 (1294)
T ss_pred HHHHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceece
Confidence 3566667788888889999999999999995 56 33333333 467777885 5888888888886544 5665
Q ss_pred Eec-ccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccc-cCCCCCchHHHHHHHHhcC--CCceEEEeccCCC
Q 002357 149 MTG-DVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH-YMKDRERGVVWEESIIFLP--PAIKMVFLSATMS 224 (931)
Q Consensus 149 ~tG-d~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH-~l~~~~~g~~~~~ii~~l~--~~~q~v~lSAT~~ 224 (931)
-.. +.....++.|+||||++|.+.+..+. .++++++||||||| ++.+.++.. ..+...++ ++.|+|++|||++
T Consensus 153 ~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLL--g~Lk~lL~~rpdlKvILmSATid 229 (1294)
T PRK11131 153 KVRFNDQVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFIL--GYLKELLPRRPDLKVIITSATID 229 (1294)
T ss_pred eecCccccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHH--HHHHHhhhcCCCceEEEeeCCCC
Confidence 332 33345678999999999999887654 48999999999999 577765542 22222333 4689999999995
Q ss_pred ChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCC
Q 002357 225 NATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGR 304 (931)
Q Consensus 225 n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 304 (931)
...|.++++ +.++ +.-+.+..|++++..+.. ........+.+.
T Consensus 230 -~e~fs~~F~---~apv--I~V~Gr~~pVei~y~p~~--------~~~~~~~~d~l~----------------------- 272 (1294)
T PRK11131 230 -PERFSRHFN---NAPI--IEVSGRTYPVEVRYRPIV--------EEADDTERDQLQ----------------------- 272 (1294)
T ss_pred -HHHHHHHcC---CCCE--EEEcCccccceEEEeecc--------cccchhhHHHHH-----------------------
Confidence 455665543 3333 222334445443332211 000000000000
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhH
Q 002357 305 MAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAI 384 (931)
Q Consensus 305 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~ 384 (931)
.+...+..+.....+.+|||++++..++.++..|.+.++...
T Consensus 273 -----------~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~--------------------------- 314 (1294)
T PRK11131 273 -----------AIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHT--------------------------- 314 (1294)
T ss_pred -----------HHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcc---------------------------
Confidence 011122223334567899999999999999999987554321
Q ss_pred HhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecc----eecCCCC------Ccc
Q 002357 385 ELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAV----KKWDGDS------HRY 454 (931)
Q Consensus 385 ~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~----~~~d~~~------~~~ 454 (931)
.|..+||+|++.+|..+++. .|..+|||||+++++|||+|++++||++. ..||... ..|
T Consensus 315 ---------~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~ 383 (1294)
T PRK11131 315 ---------EILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEP 383 (1294)
T ss_pred ---------eEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeee
Confidence 15678999999999999886 57899999999999999999999999753 3455532 235
Q ss_pred cCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 455 IGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 455 ~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
+|..+|.||+|||||.+ .|+||.++++.
T Consensus 384 iSkasa~QRaGRAGR~~---~G~c~rLyte~ 411 (1294)
T PRK11131 384 ISQASANQRKGRCGRVS---EGICIRLYSED 411 (1294)
T ss_pred cCHhhHhhhccccCCCC---CcEEEEeCCHH
Confidence 67789999999999996 49999998764
No 82
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=7.3e-28 Score=271.86 Aligned_cols=308 Identities=20% Similarity=0.292 Sum_probs=227.1
Q ss_pred CchhhhccCCCCCCHHHHHHHHHHhcC------CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHH
Q 002357 65 YNGEMAKTYSFELDPFQRVSVACLERN------ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRE 138 (931)
Q Consensus 65 ~~~~~~~~~~f~l~~~Q~~ai~~l~~g------~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~ 138 (931)
....+...+||+||..|++++..|..+ .+=++++..|||||+++.++++.+...|..+..++||--||.|.|+.
T Consensus 251 l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~ 330 (677)
T COG1200 251 LLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYES 330 (677)
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHH
Confidence 456777889999999999999988543 45699999999999999999999999999999999999999999999
Q ss_pred HHHhcC----CeEEEecccc-----------cCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHH
Q 002357 139 LHQEFK----DVGLMTGDVT-----------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVW 203 (931)
Q Consensus 139 l~~~~~----~vg~~tGd~~-----------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~ 203 (931)
+.++++ +|+++||... .+.+.+|+|+|.--+ .....++++++||+||-|+. |+.=
T Consensus 331 ~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-----Qd~V~F~~LgLVIiDEQHRF-----GV~Q 400 (677)
T COG1200 331 LRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-----QDKVEFHNLGLVIIDEQHRF-----GVHQ 400 (677)
T ss_pred HHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-----hcceeecceeEEEEeccccc-----cHHH
Confidence 999998 5888999875 245799999998644 34556899999999999976 5555
Q ss_pred HHHHHhcCC-CceEEEeccCC-CChHHHHHHHHhhcCCCeEEEec-CCCCCcceeeeeccCCCceeEeeCccchhchhhH
Q 002357 204 EESIIFLPP-AIKMVFLSATM-SNATQFAEWICHLHKQPCHVVYT-DFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNF 280 (931)
Q Consensus 204 ~~ii~~l~~-~~q~v~lSAT~-~n~~e~~~~l~~~~~~~~~v~~~-~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (931)
...+..-.. .+.++.||||+ |....+.-+ + .-.+.++.. +.-..|+..++.+..
T Consensus 401 R~~L~~KG~~~Ph~LvMTATPIPRTLAlt~f-g---DldvS~IdElP~GRkpI~T~~i~~~------------------- 457 (677)
T COG1200 401 RLALREKGEQNPHVLVMTATPIPRTLALTAF-G---DLDVSIIDELPPGRKPITTVVIPHE------------------- 457 (677)
T ss_pred HHHHHHhCCCCCcEEEEeCCCchHHHHHHHh-c---cccchhhccCCCCCCceEEEEeccc-------------------
Confidence 555555555 68999999998 433332211 1 112222221 111234444433211
Q ss_pred HHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHc--CCCcEEEEecCHHHHHHH--------HHHhc
Q 002357 281 VKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMER--KFQPVIVFSFSRRECEQH--------AMSMS 350 (931)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~~~~~IVF~~sr~~~~~l--------a~~L~ 350 (931)
....+++.+... .+.++.|-|+-.++.+.+ +..|+
T Consensus 458 -----------------------------------~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~ 502 (677)
T COG1200 458 -----------------------------------RRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELK 502 (677)
T ss_pred -----------------------------------cHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHH
Confidence 112222222221 567899999877666532 22222
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhc
Q 002357 351 KLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAM 430 (931)
Q Consensus 351 ~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~ 430 (931)
. . .-...|+.+||.|.+.+|+.|++.|++|+++|||||.+.+.
T Consensus 503 ~------------------~-------------------~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEV 545 (677)
T COG1200 503 S------------------F-------------------LPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEV 545 (677)
T ss_pred H------------------H-------------------cccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEe
Confidence 1 0 01123899999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCcc
Q 002357 431 GLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQM 486 (931)
Q Consensus 431 GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~ 486 (931)
|||+|+.+++|. +|.. -...+...|-.||.||.+. .+.|++++.+..
T Consensus 546 GVdVPnATvMVI----e~AE---RFGLaQLHQLRGRVGRG~~--qSyC~Ll~~~~~ 592 (677)
T COG1200 546 GVDVPNATVMVI----ENAE---RFGLAQLHQLRGRVGRGDL--QSYCVLLYKPPL 592 (677)
T ss_pred cccCCCCeEEEE----echh---hhhHHHHHHhccccCCCCc--ceEEEEEeCCCC
Confidence 999999998662 2222 3445789999999999887 599999998875
No 83
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=1.1e-27 Score=274.11 Aligned_cols=332 Identities=19% Similarity=0.189 Sum_probs=210.8
Q ss_pred ccCCCCCCHHHHHHHHHHhc----CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC--
Q 002357 71 KTYSFELDPFQRVSVACLER----NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-- 144 (931)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~----g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-- 144 (931)
..+.++|+++|.+|+..+.+ ++..++++|||+|||+++..++... +.++||++|+++|+.||++.+...+.
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~---~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL---KRSTLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh---cCCEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 34567799999999999977 8999999999999999998887776 44499999999999999998888887
Q ss_pred -CeEEEecccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCC
Q 002357 145 -DVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATM 223 (931)
Q Consensus 145 -~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~ 223 (931)
.+|.+.|+........|.|+|.+.+...........+++++|||||||++.... ...+...+.....+++||||+
T Consensus 108 ~~~g~~~~~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~----~~~~~~~~~~~~~~LGLTATp 183 (442)
T COG1061 108 DEIGIYGGGEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS----YRRILELLSAAYPRLGLTATP 183 (442)
T ss_pred cccceecCceeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH----HHHHHHhhhcccceeeeccCc
Confidence 467777765433326899999998876421111223479999999999998543 333444444333399999998
Q ss_pred CChH-HHHHHHHhhcCCCeEEEec-----CCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcC
Q 002357 224 SNAT-QFAEWICHLHKQPCHVVYT-----DFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRE 297 (931)
Q Consensus 224 ~n~~-e~~~~l~~~~~~~~~v~~~-----~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 297 (931)
+... .....+....+..++-+.. ..--.|...+.+ ................................
T Consensus 184 ~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i-------~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (442)
T COG1061 184 EREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEI-------KVTLTEDEEREYAKESARFRELLRARGTLRAE 256 (442)
T ss_pred eeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEE-------EeccchHHHHHhhhhhhhhhhhhhhhhhhhHH
Confidence 7433 1111122111111111110 011111111111 11001111000000000000000000000000
Q ss_pred CCCCCCCccCCCCCCCCCCHHHHHHHHHHc-CCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCc
Q 002357 298 NGKASGRMAKGGSGSGGSDIFKIVKMIMER-KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNE 376 (931)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~ 376 (931)
.............+..+...+... .+.+++|||.++.+++.++..+...+.
T Consensus 257 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~---------------------- 308 (442)
T COG1061 257 ------NEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI---------------------- 308 (442)
T ss_pred ------HHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc----------------------
Confidence 000000001122333334444433 467999999999999999999976433
Q ss_pred ccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccC
Q 002357 377 EDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIG 456 (931)
Q Consensus 377 ~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s 456 (931)
+..+.|..++.+|+.+++.|+.|.+++||++.++.+|+|+|+++++|...+ .-|
T Consensus 309 ------------------~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~--------t~S 362 (442)
T COG1061 309 ------------------VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRP--------TGS 362 (442)
T ss_pred ------------------eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCC--------CCc
Confidence 357899999999999999999999999999999999999999999985332 668
Q ss_pred HHHHHHhhhccCCC
Q 002357 457 SGEYIQMSGRAGRR 470 (931)
Q Consensus 457 ~~~y~Qr~GRaGR~ 470 (931)
+..|+||+||.-|.
T Consensus 363 ~~~~~Q~lGR~LR~ 376 (442)
T COG1061 363 RRLFIQRLGRGLRP 376 (442)
T ss_pred HHHHHHHhhhhccC
Confidence 89999999999994
No 84
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.96 E-value=4.4e-27 Score=284.86 Aligned_cols=376 Identities=17% Similarity=0.135 Sum_probs=229.7
Q ss_pred CCCCCHHHHHHHHHHhc--CCcEEEEcCCCCCcHHHHHHHHHHHHhCC--CEEEEEcCchhhHHHHHHHHHHhcC-CeEE
Q 002357 74 SFELDPFQRVSVACLER--NESVLVSAHTSAGKTAVAEYAIAMAFRDK--QRVIYTSPLKALSNQKYRELHQEFK-DVGL 148 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~--g~~vlv~apTGsGKTl~~~l~i~~~l~~~--~rvl~l~P~kaL~~Q~~~~l~~~~~-~vg~ 148 (931)
...|.|||..++..+.. ...++++..+|.|||+.+.+.+...+..+ .++||+||. .|..||..++.+.|+ .+.+
T Consensus 150 ~~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i 228 (956)
T PRK04914 150 RASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSL 228 (956)
T ss_pred CCCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEE
Confidence 35599999999877643 35799999999999999877766655444 699999998 899999999988876 5666
Q ss_pred Eeccc---------ccCCCCCeeEecHHHHHHHHh-cCccccCcccEEEEeccccCCCCC-chHHHHHHHHhc-CCCceE
Q 002357 149 MTGDV---------TLSPNASCLVMTTEILRGMLY-RGSEVLKEVAWVIFDEIHYMKDRE-RGVVWEESIIFL-PPAIKM 216 (931)
Q Consensus 149 ~tGd~---------~~~~~~~IlV~Tpe~L~~~l~-~~~~~l~~l~~vViDEaH~l~~~~-~g~~~~~ii~~l-~~~~q~ 216 (931)
+.++. +.-...+++|+|.+.+...-. .....-..+++||+||||++.... ........+..+ .....+
T Consensus 229 ~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~ 308 (956)
T PRK04914 229 FDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGV 308 (956)
T ss_pred EcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCE
Confidence 55432 111246899999998864211 111112478999999999997321 111123333333 344579
Q ss_pred EEeccCCC--ChHHHHHHHHhhcCCCeEE---Ee---cCCCCC-----------c--------ceeeeeccCCCceeEee
Q 002357 217 VFLSATMS--NATQFAEWICHLHKQPCHV---VY---TDFRPT-----------P--------LQHYVFPVGGSGLYLVV 269 (931)
Q Consensus 217 v~lSAT~~--n~~e~~~~l~~~~~~~~~v---~~---~~~rp~-----------p--------l~~~~~~~~~~~~~~~~ 269 (931)
++|||||- +..++-..+..+......- +. ..++|+ + +..++-......+.-..
T Consensus 309 LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~ 388 (956)
T PRK04914 309 LLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAA 388 (956)
T ss_pred EEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhh
Confidence 99999995 3344444443322111000 00 000010 0 00000000000000000
Q ss_pred CccchhchhhHHHHHHHHHhhhcCCC------c-CCCCCCCC---c----------------------------------
Q 002357 270 DEKEQFREDNFVKLQDTFLKQKIGGR------R-ENGKASGR---M---------------------------------- 305 (931)
Q Consensus 270 ~~~~~~~~~~~~~~~~~l~~~~~~~~------~-~~~~~~~~---~---------------------------------- 305 (931)
.....-........+..+........ + ...+...+ .
T Consensus 389 ~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~~~~~ 468 (956)
T PRK04914 389 NSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQIYQEF 468 (956)
T ss_pred cccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHHHHHH
Confidence 00000000001111221211000000 0 00000000 0
Q ss_pred c-CCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhc-cCCCCChHHHHHHHHHHHHHHhhcCcccCCChh
Q 002357 306 A-KGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMS-KLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPA 383 (931)
Q Consensus 306 ~-~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~-~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~ 383 (931)
. .+......+++..+++.+......++||||+++..|..++..|. ..|+.
T Consensus 469 ~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~---------------------------- 520 (956)
T PRK04914 469 EDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIR---------------------------- 520 (956)
T ss_pred hhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCee----------------------------
Confidence 0 00001112345567777766667899999999999999999994 45554
Q ss_pred HHhHHHHhhccceeccCCCCHHHHHHHHHHHhc--CCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHH
Q 002357 384 IELMLPLLKRGIAVHHSGLLPVIKELVELLFQE--GLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYI 461 (931)
Q Consensus 384 ~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~--g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~ 461 (931)
+..+||+|++.+|+.+.+.|++ |..+|||||+++++|+|++.+++|| +||. |.+|..|.
T Consensus 521 -----------~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VI----nfDl----P~nP~~~e 581 (956)
T PRK04914 521 -----------AAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLV----LFDL----PFNPDLLE 581 (956)
T ss_pred -----------EEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEE----EecC----CCCHHHHH
Confidence 4789999999999999999997 4699999999999999999999999 8888 99999999
Q ss_pred HhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhhc
Q 002357 462 QMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLE 497 (931)
Q Consensus 462 Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~~ 497 (931)
||+||+||.|+.+...+++++.+......+.++...
T Consensus 582 QRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 582 QRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred HHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 999999999998776667766665445555555544
No 85
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.2e-26 Score=274.37 Aligned_cols=362 Identities=16% Similarity=0.159 Sum_probs=228.4
Q ss_pred hhhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC---
Q 002357 68 EMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK--- 144 (931)
Q Consensus 68 ~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~--- 144 (931)
.....++..|+++|..+...+.+|+ +..+.||+|||++|.+|++.....|..|.+++||+.||.|.+..+..++.
T Consensus 70 a~~R~~g~~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lG 147 (790)
T PRK09200 70 AAKRVLGMRPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLG 147 (790)
T ss_pred HHHHHhCCCCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 3345678889999999999888776 99999999999999999987777899999999999999999999888876
Q ss_pred -CeEEEeccccc------CCCCCeeEecHHHH-HHHHhc------CccccCcccEEEEeccccCC-CCCchH--------
Q 002357 145 -DVGLMTGDVTL------SPNASCLVMTTEIL-RGMLYR------GSEVLKEVAWVIFDEIHYMK-DRERGV-------- 201 (931)
Q Consensus 145 -~vg~~tGd~~~------~~~~~IlV~Tpe~L-~~~l~~------~~~~l~~l~~vViDEaH~l~-~~~~g~-------- 201 (931)
.+|+++|+.+. ...++|+++||+.+ .++|.. ....++.+.++|+||||.|+ |..+.+
T Consensus 148 l~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~ 227 (790)
T PRK09200 148 LTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPR 227 (790)
T ss_pred CeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCc
Confidence 68889988762 23689999999888 333322 12356889999999999875 432211
Q ss_pred -------HHHHHHHhcCC--------CceEEEeccC----------CCC-----hHHHHHHHHhhc------CCCeEEEe
Q 002357 202 -------VWEESIIFLPP--------AIKMVFLSAT----------MSN-----ATQFAEWICHLH------KQPCHVVY 245 (931)
Q Consensus 202 -------~~~~ii~~l~~--------~~q~v~lSAT----------~~n-----~~e~~~~l~~~~------~~~~~v~~ 245 (931)
.+..+...+.. ..+.+.+|.. ++| ..++..|+.... ...++.++
T Consensus 228 ~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV 307 (790)
T PRK09200 228 VQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIV 307 (790)
T ss_pred cccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEE
Confidence 12223333322 2233444431 111 112334443211 11111111
Q ss_pred cCC----------CCCcceeeeeccCC------CceeEeeCccc---hhchhhHHHHHHHHHhhhcCCCc----------
Q 002357 246 TDF----------RPTPLQHYVFPVGG------SGLYLVVDEKE---QFREDNFVKLQDTFLKQKIGGRR---------- 296 (931)
Q Consensus 246 ~~~----------rp~pl~~~~~~~~~------~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~---------- 296 (931)
.+. |..+-. -|..+. +.-..+-++.. .....+|-+.+..+....+....
T Consensus 308 ~~~~v~ivD~~TGr~~~gr--~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~ 385 (790)
T PRK09200 308 YDGEIVLVDRFTGRVLPGR--KLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYN 385 (790)
T ss_pred ECCEEEEEECCCCcCCCCC--ccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhC
Confidence 111 111111 111110 00000001110 11122333333332211111000
Q ss_pred ------CCCCCCCCccCCC--CCCCCCCHHHHHHHHHH--cCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHH
Q 002357 297 ------ENGKASGRMAKGG--SGSGGSDIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQV 366 (931)
Q Consensus 297 ------~~~~~~~~~~~~~--~~~~~~~~~~ll~~l~~--~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~ 366 (931)
+..+...+..... ......+...++..+.. ..+.|+||||+|++.++.++..|.+.+++
T Consensus 386 l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~----------- 454 (790)
T PRK09200 386 MEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIP----------- 454 (790)
T ss_pred CcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCC-----------
Confidence 0000000000000 01223456667776654 36789999999999999999999887776
Q ss_pred HHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCC---CCcE-----
Q 002357 367 FQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNM---PAKT----- 438 (931)
Q Consensus 367 ~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdi---p~~~----- 438 (931)
+.++||.+.+.++..+...++.| +|+|||++++||+|+ |++.
T Consensus 455 ----------------------------~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL 504 (790)
T PRK09200 455 ----------------------------HNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGL 504 (790)
T ss_pred ----------------------------EEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCc
Confidence 47899999999988888888777 799999999999999 6998
Q ss_pred EEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCC
Q 002357 439 VVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDE 484 (931)
Q Consensus 439 vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~ 484 (931)
+|| +||. |.+...|.||+|||||.|.. |.++.+++.
T Consensus 505 ~VI----~~d~----p~s~r~y~qr~GRtGR~G~~--G~s~~~is~ 540 (790)
T PRK09200 505 AVI----GTER----MESRRVDLQLRGRSGRQGDP--GSSQFFISL 540 (790)
T ss_pred EEE----eccC----CCCHHHHHHhhccccCCCCC--eeEEEEEcc
Confidence 999 7777 88999999999999999986 555555543
No 86
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=2.1e-27 Score=292.14 Aligned_cols=315 Identities=19% Similarity=0.218 Sum_probs=216.2
Q ss_pred CHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHH-Hh--CCCEEEEEcCchhhHHHHHHHHHHhcC-CeEEEec--
Q 002357 78 DPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMA-FR--DKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTG-- 151 (931)
Q Consensus 78 ~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~-l~--~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~vg~~tG-- 151 (931)
+.+..+.+..+..++.++|+|+||||||.. +|.+.. .. ...+++++.|.+--+...++.+.+.++ .+|...|
T Consensus 69 ~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~ 146 (1283)
T TIGR01967 69 SAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYK 146 (1283)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeE
Confidence 444566778888889999999999999995 443322 22 234788899999888888877777665 4444333
Q ss_pred ---ccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccc-cCCCCCchHH-HHHHHHhcCCCceEEEeccCCCCh
Q 002357 152 ---DVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH-YMKDRERGVV-WEESIIFLPPAIKMVFLSATMSNA 226 (931)
Q Consensus 152 ---d~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH-~l~~~~~g~~-~~~ii~~l~~~~q~v~lSAT~~n~ 226 (931)
+...+++..|.|||+++|..++.... .++++++||||||| +..+.++... +..++. ..++.|+|+||||+. .
T Consensus 147 vR~~~~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~-~rpdLKlIlmSATld-~ 223 (1283)
T TIGR01967 147 VRFHDQVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLP-RRPDLKIIITSATID-P 223 (1283)
T ss_pred EcCCcccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHh-hCCCCeEEEEeCCcC-H
Confidence 34456678999999999999887654 48999999999999 5777655543 233332 345789999999995 5
Q ss_pred HHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCcc
Q 002357 227 TQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMA 306 (931)
Q Consensus 227 ~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 306 (931)
..|+++++. .++ +....+..|++.+..+.. .........+
T Consensus 224 ~~fa~~F~~---apv--I~V~Gr~~PVev~Y~~~~---------~~~~~~~~~~-------------------------- 263 (1283)
T TIGR01967 224 ERFSRHFNN---API--IEVSGRTYPVEVRYRPLV---------EEQEDDDLDQ-------------------------- 263 (1283)
T ss_pred HHHHHHhcC---CCE--EEECCCcccceeEEeccc---------ccccchhhhH--------------------------
Confidence 567776642 232 333334444443221110 0000000000
Q ss_pred CCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHh
Q 002357 307 KGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIEL 386 (931)
Q Consensus 307 ~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~ 386 (931)
...+...+..+.....+.+|||++++.+++.++..|.+.++..
T Consensus 264 -------~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~------------------------------ 306 (1283)
T TIGR01967 264 -------LEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRH------------------------------ 306 (1283)
T ss_pred -------HHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCC------------------------------
Confidence 0011223333333455789999999999999999997644321
Q ss_pred HHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecc----eecCCCC------CcccC
Q 002357 387 MLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAV----KKWDGDS------HRYIG 456 (931)
Q Consensus 387 l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~----~~~d~~~------~~~~s 456 (931)
..|..+||+|++.+|+.++..+ +..+||+||+++++|||+|++++||++. ..||+.. ..++|
T Consensus 307 ------~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~IS 378 (1283)
T TIGR01967 307 ------TEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPIS 378 (1283)
T ss_pred ------cEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCC
Confidence 0167899999999999986543 3469999999999999999999999753 3355432 23678
Q ss_pred HHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 457 SGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 457 ~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
..+|.||+|||||.|. |+||.++++.
T Consensus 379 kasa~QRaGRAGR~~~---G~cyRLyte~ 404 (1283)
T TIGR01967 379 QASANQRKGRCGRVAP---GICIRLYSEE 404 (1283)
T ss_pred HHHHHHHhhhhCCCCC---ceEEEecCHH
Confidence 8999999999999984 9999998754
No 87
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.96 E-value=1.6e-27 Score=285.72 Aligned_cols=364 Identities=19% Similarity=0.154 Sum_probs=221.9
Q ss_pred cCCCCCCHHHHHHHHHHhc---CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC-CeE
Q 002357 72 TYSFELDPFQRVSVACLER---NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVG 147 (931)
Q Consensus 72 ~~~f~l~~~Q~~ai~~l~~---g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~vg 147 (931)
..+++|++.|+++++.+.. +.++++.|+||||||.+|+.++...+..|.++||++|+++|+.|+++.|++.|+ .+.
T Consensus 140 ~~~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~ 219 (679)
T PRK05580 140 FEPPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVA 219 (679)
T ss_pred cCCCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEE
Confidence 3467799999999999976 478999999999999999999988888899999999999999999999999887 788
Q ss_pred EEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCc-hH--HHHHH--HHhcC
Q 002357 148 LMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRER-GV--VWEES--IIFLP 211 (931)
Q Consensus 148 ~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~-g~--~~~~i--i~~l~ 211 (931)
+++|+.+. +..++|+|+|++.+. ..++++++||+||+|....++. +. ....+ .....
T Consensus 220 ~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~ 292 (679)
T PRK05580 220 VLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKL 292 (679)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhc
Confidence 99988653 246899999998763 3478999999999998764321 11 11222 23345
Q ss_pred CCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCC--cceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHh
Q 002357 212 PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPT--PLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLK 289 (931)
Q Consensus 212 ~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~--pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 289 (931)
.+.+++++|||++ .. .|.....+ ....+.-..++. ++-. +. +++...... .
T Consensus 293 ~~~~~il~SATps-~~---s~~~~~~g-~~~~~~l~~r~~~~~~p~---------v~-~id~~~~~~------------~ 345 (679)
T PRK05580 293 ENIPVVLGSATPS-LE---SLANAQQG-RYRLLRLTKRAGGARLPE---------VE-IIDMRELLR------------G 345 (679)
T ss_pred cCCCEEEEcCCCC-HH---HHHHHhcc-ceeEEEeccccccCCCCe---------EE-EEechhhhh------------h
Confidence 6889999999976 21 22222222 233333232221 1110 11 111110000 0
Q ss_pred hhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHH--cCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHH-
Q 002357 290 QKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQV- 366 (931)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~- 366 (931)
+.. ..--..+++.+.+ ..+.++|||++.+..+-.+...-+..-..++.....+...
T Consensus 346 -------------------~~~--~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~ 404 (679)
T PRK05580 346 -------------------ENG--SFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHR 404 (679)
T ss_pred -------------------ccc--CCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEEC
Confidence 000 0000123333332 2456899999987654333333222111110000000000
Q ss_pred HHHH-----Hh---hcC-------cc--cCCChhHHhHHHHhhc-----cceeccCCCC--HHHHHHHHHHHhcCCceEE
Q 002357 367 FQNA-----VD---CLN-------EE--DRNLPAIELMLPLLKR-----GIAVHHSGLL--PVIKELVELLFQEGLVKAL 422 (931)
Q Consensus 367 ~~~~-----~~---~l~-------~~--d~~l~~~~~l~~~l~~-----gi~~~hg~l~--~~~R~~v~~~F~~g~i~vL 422 (931)
..+. +. ... .. ...-.+++.+.+.+.+ .|...|+++. +.+++.+++.|++|+++||
T Consensus 405 ~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~IL 484 (679)
T PRK05580 405 FQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADIL 484 (679)
T ss_pred CCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEE
Confidence 0000 00 000 00 0001233444443333 5788899986 4678999999999999999
Q ss_pred EecchhhcccCCCCcEEEEecceecCCCCCcc------cCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhh
Q 002357 423 FATETFAMGLNMPAKTVVFTAVKKWDGDSHRY------IGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMV 495 (931)
Q Consensus 423 vaT~~la~GIdip~~~vVI~~~~~~d~~~~~~------~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~ 495 (931)
|+|+++++|+|+|++++|+.. ..|...+.| .....|+|++|||||.+. .|.+++....+ +...++.+.
T Consensus 485 VgT~~iakG~d~p~v~lV~il--~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~--~g~viiqT~~p-~~~~~~~~~ 558 (679)
T PRK05580 485 IGTQMLAKGHDFPNVTLVGVL--DADLGLFSPDFRASERTFQLLTQVAGRAGRAEK--PGEVLIQTYHP-EHPVIQALL 558 (679)
T ss_pred EEChhhccCCCCCCcCEEEEE--cCchhccCCccchHHHHHHHHHHHHhhccCCCC--CCEEEEEeCCC-CCHHHHHHH
Confidence 999999999999999977521 233211111 134679999999999876 48888776544 333344433
No 88
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.96 E-value=7.8e-28 Score=248.22 Aligned_cols=315 Identities=19% Similarity=0.267 Sum_probs=231.1
Q ss_pred chhhhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC
Q 002357 66 NGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK 144 (931)
Q Consensus 66 ~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~ 144 (931)
...+...|..+ ++|.|..+|.+...|+++++..|||.||++||.+|.+-+ .+-+|+++|...|+..+.-.++.++-
T Consensus 83 ~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a---dg~alvi~plislmedqil~lkqlgi 159 (695)
T KOG0353|consen 83 KDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA---DGFALVICPLISLMEDQILQLKQLGI 159 (695)
T ss_pred HHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc---CCceEeechhHHHHHHHHHHHHHhCc
Confidence 34555667776 999999999999999999999999999999999998765 78899999999999999999988876
Q ss_pred CeEEEecccc-------------cCCCCCeeEecHHHHHH---HHhc--CccccCcccEEEEeccccCCCCCc--hHHHH
Q 002357 145 DVGLMTGDVT-------------LSPNASCLVMTTEILRG---MLYR--GSEVLKEVAWVIFDEIHYMKDRER--GVVWE 204 (931)
Q Consensus 145 ~vg~~tGd~~-------------~~~~~~IlV~Tpe~L~~---~l~~--~~~~l~~l~~vViDEaH~l~~~~~--g~~~~ 204 (931)
+...+....+ .+.....+..|||.+.. ++.+ .......+.++-+||+|+.+.|+. .+.+.
T Consensus 160 ~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~ 239 (695)
T KOG0353|consen 160 DASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYK 239 (695)
T ss_pred chhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchH
Confidence 5444443332 23456789999998752 2221 122355788999999999998743 23333
Q ss_pred --HHHHhcCCCceEEEeccCCCChH--HHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhH
Q 002357 205 --ESIIFLPPAIKMVFLSATMSNAT--QFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNF 280 (931)
Q Consensus 205 --~ii~~l~~~~q~v~lSAT~~n~~--e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (931)
.++..--+.+.+++|+||..|.. +..+.++- ..+..+...+....+..- +....
T Consensus 240 ~l~ilkrqf~~~~iigltatatn~vl~d~k~il~i---e~~~tf~a~fnr~nl~ye-----------v~qkp-------- 297 (695)
T KOG0353|consen 240 ALGILKRQFKGAPIIGLTATATNHVLDDAKDILCI---EAAFTFRAGFNRPNLKYE-----------VRQKP-------- 297 (695)
T ss_pred HHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhH---HhhheeecccCCCCceeE-----------eeeCC--------
Confidence 23444456889999999987654 22333321 123333333322222211 11100
Q ss_pred HHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHc-CCCcEEEEecCHHHHHHHHHHhccCCCCChHH
Q 002357 281 VKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMER-KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEE 359 (931)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e 359 (931)
.+....+..+.+.+... .++..||||+|++.|+.++..|...|+.+
T Consensus 298 ------------------------------~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a--- 344 (695)
T KOG0353|consen 298 ------------------------------GNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHA--- 344 (695)
T ss_pred ------------------------------CChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccc---
Confidence 01122334444444432 56788999999999999999999988764
Q ss_pred HHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEE
Q 002357 360 KDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTV 439 (931)
Q Consensus 360 ~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~v 439 (931)
+.+|+.|.|.+|.-+-+.+-.|++.|+|||-+|+||||-|+++.
T Consensus 345 ------------------------------------~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrf 388 (695)
T KOG0353|consen 345 ------------------------------------GAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRF 388 (695)
T ss_pred ------------------------------------cccccccCccccccccccccccceEEEEEEeeecccCCCCCeeE
Confidence 78999999999999999999999999999999999999999999
Q ss_pred EEecceecCCCCCcccCHHHHHH-------------------------------------------hhhccCCCCCCCce
Q 002357 440 VFTAVKKWDGDSHRYIGSGEYIQ-------------------------------------------MSGRAGRRGKDDRG 476 (931)
Q Consensus 440 VI~~~~~~d~~~~~~~s~~~y~Q-------------------------------------------r~GRaGR~G~~~~g 476 (931)
||+ +.. |.|.+.|.| ..|||||.+.. +
T Consensus 389 vih----hsl----~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~--a 458 (695)
T KOG0353|consen 389 VIH----HSL----PKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMK--A 458 (695)
T ss_pred EEe----ccc----chhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCc--c
Confidence 994 444 889999999 78999999884 7
Q ss_pred EEEEEeCC
Q 002357 477 ICIIMVDE 484 (931)
Q Consensus 477 ~~ii~~~~ 484 (931)
.||+++.=
T Consensus 459 ~cilyy~~ 466 (695)
T KOG0353|consen 459 DCILYYGF 466 (695)
T ss_pred cEEEEech
Confidence 78887753
No 89
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.95 E-value=2e-26 Score=269.79 Aligned_cols=347 Identities=16% Similarity=0.156 Sum_probs=204.9
Q ss_pred cCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC----CeE
Q 002357 72 TYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----DVG 147 (931)
Q Consensus 72 ~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~----~vg 147 (931)
.++. +|||.+++..+.-++..++.++||+|||++|.+|++.....+..|+|++|+++|+.|.++.+..++. .++
T Consensus 66 ~lgl--rpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~ 143 (762)
T TIGR03714 66 VLGM--FPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVS 143 (762)
T ss_pred hcCC--CccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEE
Confidence 3454 4455555554433444799999999999999999887777788999999999999999998876654 677
Q ss_pred EEecccc---c-------CCCCCeeEecHHHH-HHHHhc------CccccCcccEEEEeccccCC-CCCch---------
Q 002357 148 LMTGDVT---L-------SPNASCLVMTTEIL-RGMLYR------GSEVLKEVAWVIFDEIHYMK-DRERG--------- 200 (931)
Q Consensus 148 ~~tGd~~---~-------~~~~~IlV~Tpe~L-~~~l~~------~~~~l~~l~~vViDEaH~l~-~~~~g--------- 200 (931)
+..++.. . ..+++|+++||+.| .+.|.. ....++.+.++|+||||.|+ |..+.
T Consensus 144 ~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~ 223 (762)
T TIGR03714 144 LGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPR 223 (762)
T ss_pred EEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCc
Confidence 7666421 1 13689999999998 343321 22347889999999999884 32111
Q ss_pred ------HHHHHHHHhcCC--------CceEEEeccC----------CCC---h--HHHHHHHHh-------hcCCC----
Q 002357 201 ------VVWEESIIFLPP--------AIKMVFLSAT----------MSN---A--TQFAEWICH-------LHKQP---- 240 (931)
Q Consensus 201 ------~~~~~ii~~l~~--------~~q~v~lSAT----------~~n---~--~e~~~~l~~-------~~~~~---- 240 (931)
.....+...|.. ..+-+.||-. ++| . .++..|+.. +..+.
T Consensus 224 ~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV 303 (762)
T TIGR03714 224 VQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVV 303 (762)
T ss_pred cchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 111223333432 1233444321 111 1 112233321 11111
Q ss_pred ----eEEEec-CCCC----------------------C---------------cceeeeeccCCCceeEeeCccchhchh
Q 002357 241 ----CHVVYT-DFRP----------------------T---------------PLQHYVFPVGGSGLYLVVDEKEQFRED 278 (931)
Q Consensus 241 ----~~v~~~-~~rp----------------------~---------------pl~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (931)
+.++.. ..|. + .+..-+..-.+... . ...
T Consensus 304 ~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~----~-----~~~ 374 (762)
T TIGR03714 304 TNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGK----V-----AEK 374 (762)
T ss_pred ECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCh----h-----HHH
Confidence 111110 0000 0 00111222121100 0 001
Q ss_pred hHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHH--cCCCcEEEEecCHHHHHHHHHHhccCCCCC
Q 002357 279 NFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNT 356 (931)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~~~IVF~~sr~~~~~la~~L~~~~~~~ 356 (931)
+|.+.++ +.-...+...+....+.... --.....++..+++.+.+ ..+.|+||||+|+..++.++..|.+.+++
T Consensus 375 Ef~~iY~-l~v~~IPt~kp~~r~d~~d~--i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~- 450 (762)
T TIGR03714 375 EFIETYS-LSVVKIPTNKPIIRIDYPDK--IYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIP- 450 (762)
T ss_pred HHHHHhC-CCEEEcCCCCCeeeeeCCCe--EEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCC-
Confidence 1111110 00000000000000000000 001122345666666654 46789999999999999999999887776
Q ss_pred hHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCC-
Q 002357 357 QEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMP- 435 (931)
Q Consensus 357 ~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip- 435 (931)
..++||.+.+.++..+...|+.| .|+|||++++||+|+|
T Consensus 451 --------------------------------------~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l 490 (762)
T TIGR03714 451 --------------------------------------HNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKL 490 (762)
T ss_pred --------------------------------------EEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCC
Confidence 36789999999998888877777 7999999999999999
Q ss_pred --------CcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCC
Q 002357 436 --------AKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDE 484 (931)
Q Consensus 436 --------~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~ 484 (931)
++.||+ .|+. |....+ .||+|||||.|.. |.++.+++.
T Consensus 491 ~~~v~~~GGL~vIi----t~~~----ps~rid-~qr~GRtGRqG~~--G~s~~~is~ 536 (762)
T TIGR03714 491 GKGVAELGGLAVIG----TERM----ENSRVD-LQLRGRSGRQGDP--GSSQFFVSL 536 (762)
T ss_pred CccccccCCeEEEE----ecCC----CCcHHH-HHhhhcccCCCCc--eeEEEEEcc
Confidence 899999 6776 544455 9999999999986 555555543
No 90
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=3.5e-27 Score=273.29 Aligned_cols=124 Identities=19% Similarity=0.134 Sum_probs=102.4
Q ss_pred hccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC----C
Q 002357 70 AKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----D 145 (931)
Q Consensus 70 ~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~----~ 145 (931)
...++..|+|+|..+++.+..|+ ++.+.||+|||++|.+|++.....|..|+|++||++||.|.++.+..++. .
T Consensus 97 ~R~lg~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGls 174 (656)
T PRK12898 97 GRVLGQRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLT 174 (656)
T ss_pred HHHhCCCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCE
Confidence 34678899999999999999998 99999999999999999999888899999999999999999999988764 7
Q ss_pred eEEEeccccc-----CCCCCeeEecHHHH-----HHHHhc---------------------CccccCcccEEEEeccccC
Q 002357 146 VGLMTGDVTL-----SPNASCLVMTTEIL-----RGMLYR---------------------GSEVLKEVAWVIFDEIHYM 194 (931)
Q Consensus 146 vg~~tGd~~~-----~~~~~IlV~Tpe~L-----~~~l~~---------------------~~~~l~~l~~vViDEaH~l 194 (931)
+++++|+.+. ...++|+|+|...+ ++.+.. .....+.+.+.|+||||.+
T Consensus 175 v~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSi 254 (656)
T PRK12898 175 VGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSV 254 (656)
T ss_pred EEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecccce
Confidence 8889998753 23689999999654 332221 1123467899999999966
Q ss_pred C
Q 002357 195 K 195 (931)
Q Consensus 195 ~ 195 (931)
+
T Consensus 255 L 255 (656)
T PRK12898 255 L 255 (656)
T ss_pred e
Confidence 4
No 91
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.95 E-value=7.8e-26 Score=232.38 Aligned_cols=311 Identities=23% Similarity=0.270 Sum_probs=227.3
Q ss_pred cCCCCCCHHHHHHHH----HHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC--C
Q 002357 72 TYSFELDPFQRVSVA----CLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK--D 145 (931)
Q Consensus 72 ~~~f~l~~~Q~~ai~----~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~--~ 145 (931)
.+.-+|+|+|+.+-. .+.+.++.+|.|-||+|||-...-+|..+++.|.+|.+.+|....+-+.+.+++.-|. +
T Consensus 93 ~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~ 172 (441)
T COG4098 93 QWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCD 172 (441)
T ss_pred eeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCC
Confidence 455579999998854 4577899999999999999988788999999999999999999999999999999998 6
Q ss_pred eEEEecccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCCC
Q 002357 146 VGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSN 225 (931)
Q Consensus 146 vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n 225 (931)
+.+++||....-.++++|+|+..|... -+.++++|+||+|...-..--.....+-......--+|.||||+++
T Consensus 173 I~~Lyg~S~~~fr~plvVaTtHQLlrF-------k~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~k 245 (441)
T COG4098 173 IDLLYGDSDSYFRAPLVVATTHQLLRF-------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPTK 245 (441)
T ss_pred eeeEecCCchhccccEEEEehHHHHHH-------HhhccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCChH
Confidence 788999988766799999999988654 2368999999999764222122222222334456679999999985
Q ss_pred hHHHHHHHHhhcCCCeEEEecC----CCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCC
Q 002357 226 ATQFAEWICHLHKQPCHVVYTD----FRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKA 301 (931)
Q Consensus 226 ~~e~~~~l~~~~~~~~~v~~~~----~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 301 (931)
..+ ..........+.-. .+|-|+-.++|..+ +.+.+.
T Consensus 246 ~l~-----r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~------------------~~k~l~---------------- 286 (441)
T COG4098 246 KLE-----RKILKGNLRILKLPARFHGKPLPVPKFVWIGN------------------WNKKLQ---------------- 286 (441)
T ss_pred HHH-----HHhhhCCeeEeecchhhcCCCCCCCceEEecc------------------HHHHhh----------------
Confidence 432 33333333333222 23555545554321 111110
Q ss_pred CCCccCCCCCCCCCCHHHHHHHHHHc--CCCcEEEEecCHHHHHHHHHHhcc-CCCCChHHHHHHHHHHHHHHhhcCccc
Q 002357 302 SGRMAKGGSGSGGSDIFKIVKMIMER--KFQPVIVFSFSRRECEQHAMSMSK-LDFNTQEEKDTVEQVFQNAVDCLNEED 378 (931)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~ll~~l~~~--~~~~~IVF~~sr~~~~~la~~L~~-~~~~~~~e~~~i~~~~~~~~~~l~~~d 378 (931)
...--.++.+.+.++ .+.|++||+++....+.++..|.. ....
T Consensus 287 -----------r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~----------------------- 332 (441)
T COG4098 287 -----------RNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKE----------------------- 332 (441)
T ss_pred -----------hccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCcc-----------------------
Confidence 000112445555433 568999999999999999999944 3222
Q ss_pred CCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHH
Q 002357 379 RNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSG 458 (931)
Q Consensus 379 ~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~ 458 (931)
.|+..|+. ...|.+..+.|++|++++||+|.+++||+.+|.++|.+.+ ..++-.+.+
T Consensus 333 ---------------~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlg------aeh~vfTes 389 (441)
T COG4098 333 ---------------TIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLG------AEHRVFTES 389 (441)
T ss_pred ---------------ceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEec------CCcccccHH
Confidence 26777876 3556677778999999999999999999999999987743 345567889
Q ss_pred HHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 459 EYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 459 ~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
.++|++||+||.-....|.++.+....
T Consensus 390 aLVQIaGRvGRs~~~PtGdv~FFH~G~ 416 (441)
T COG4098 390 ALVQIAGRVGRSLERPTGDVLFFHYGK 416 (441)
T ss_pred HHHHHhhhccCCCcCCCCcEEEEeccc
Confidence 999999999999877789888877654
No 92
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.95 E-value=2.5e-26 Score=267.20 Aligned_cols=363 Identities=15% Similarity=0.132 Sum_probs=224.3
Q ss_pred hhhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC---
Q 002357 68 EMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK--- 144 (931)
Q Consensus 68 ~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~--- 144 (931)
.....+|..|++.|..+...+..|. ++.++||+|||++|.+|++.....|..|.+++||..||.|.++.+..++.
T Consensus 48 a~~R~lg~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LG 125 (745)
T TIGR00963 48 ASKRVLGMRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLG 125 (745)
T ss_pred HHHHHhCCCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 3445678889999999988888776 99999999999999999865545677899999999999999999998876
Q ss_pred -CeEEEecccccC-----CCCCeeEecHHHH-HHHHhcC------ccccCcccEEEEeccccCCC-CCchHHH-------
Q 002357 145 -DVGLMTGDVTLS-----PNASCLVMTTEIL-RGMLYRG------SEVLKEVAWVIFDEIHYMKD-RERGVVW------- 203 (931)
Q Consensus 145 -~vg~~tGd~~~~-----~~~~IlV~Tpe~L-~~~l~~~------~~~l~~l~~vViDEaH~l~~-~~~g~~~------- 203 (931)
.+++++|+.+.. -.++|+|+||.+| .+.+..+ ...++.+.++|+||+|.++- ..|.+.+
T Consensus 126 Lsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~ 205 (745)
T TIGR00963 126 LSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEK 205 (745)
T ss_pred CeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCC
Confidence 678888886532 2589999999999 7776544 24578999999999998863 3222211
Q ss_pred --------HHHHHhcCC--------CceEEEeccC-------------CCC--hHHHHHHHHhh-------cCCCeEEEe
Q 002357 204 --------EESIIFLPP--------AIKMVFLSAT-------------MSN--ATQFAEWICHL-------HKQPCHVVY 245 (931)
Q Consensus 204 --------~~ii~~l~~--------~~q~v~lSAT-------------~~n--~~e~~~~l~~~-------~~~~~~v~~ 245 (931)
..+...+.. ..+.+.||.- +-+ ...+..|+... ..+.-+++.
T Consensus 206 ~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~ 285 (745)
T TIGR00963 206 STELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVR 285 (745)
T ss_pred chHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 111222221 1222333321 000 01122333211 111111111
Q ss_pred c-------C--CCCCcceeeeeccCC-------CceeEeeCcc---chhchhhHHHHHHHHHhhhcCCCc----------
Q 002357 246 T-------D--FRPTPLQHYVFPVGG-------SGLYLVVDEK---EQFREDNFVKLQDTFLKQKIGGRR---------- 296 (931)
Q Consensus 246 ~-------~--~rp~pl~~~~~~~~~-------~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~---------- 296 (931)
. . .|..+-. -|..+. .++. +-++. ......+|-..+..+....+....
T Consensus 286 d~~V~ivD~~TGR~~~gr--~ws~GLhQaiEaKE~v~-i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~ 362 (745)
T TIGR00963 286 DGEVVIVDEFTGRIMEGR--RWSDGLHQAIEAKEGVE-IQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYN 362 (745)
T ss_pred CCEEEEEECCCCcCCCCC--ccchHHHHHHHHhcCCC-cCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhC
Confidence 1 0 0111100 000000 0000 00000 001112222222222111000000
Q ss_pred ------CCCCCCCCccCCC--CCCCCCCHHHHHHHHH--HcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHH
Q 002357 297 ------ENGKASGRMAKGG--SGSGGSDIFKIVKMIM--ERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQV 366 (931)
Q Consensus 297 ------~~~~~~~~~~~~~--~~~~~~~~~~ll~~l~--~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~ 366 (931)
+..+...+..... -.....++..+++.+. ...+.|+||||+|+..++.++..|.+.+++.
T Consensus 363 l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~---------- 432 (745)
T TIGR00963 363 LEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPH---------- 432 (745)
T ss_pred CCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCe----------
Confidence 0000000000000 0122345666777663 3478999999999999999999998877763
Q ss_pred HHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCC-------cEE
Q 002357 367 FQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPA-------KTV 439 (931)
Q Consensus 367 ~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~-------~~v 439 (931)
.++||. +.+|+..+..|+.+...|+|||++++||+|++. ..+
T Consensus 433 -----------------------------~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~ 481 (745)
T TIGR00963 433 -----------------------------NVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLY 481 (745)
T ss_pred -----------------------------EEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcE
Confidence 678988 889999999999999999999999999999998 448
Q ss_pred EEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCC
Q 002357 440 VFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDE 484 (931)
Q Consensus 440 VI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~ 484 (931)
|| .++. |.|...|.|++|||||.|..|.+..++-..+
T Consensus 482 VI----~t~~----p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 482 VI----GTER----HESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred EE----ecCC----CCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 88 5555 8899999999999999999766555554443
No 93
>PRK09694 helicase Cas3; Provisional
Probab=99.95 E-value=9e-26 Score=272.02 Aligned_cols=322 Identities=15% Similarity=0.103 Sum_probs=198.2
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCC--CEEEEEcCchhhHHHHHHHHHH----hcC--C
Q 002357 74 SFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK--QRVIYTSPLKALSNQKYRELHQ----EFK--D 145 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~--~rvl~l~P~kaL~~Q~~~~l~~----~~~--~ 145 (931)
+|.|+|+|+.+......+..+++.||||+|||.++++++...+..+ .+++|..||++++||+++++.+ .|+ +
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5689999998865445567899999999999999988776655443 6999999999999999999875 343 6
Q ss_pred eEEEecccccCC----------------------------------CCCeeEecHHHHHHHHhc-CccccCccc----EE
Q 002357 146 VGLMTGDVTLSP----------------------------------NASCLVMTTEILRGMLYR-GSEVLKEVA----WV 186 (931)
Q Consensus 146 vg~~tGd~~~~~----------------------------------~~~IlV~Tpe~L~~~l~~-~~~~l~~l~----~v 186 (931)
+++.+|....+. -++|+|+|+..+...... ....++.++ +|
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svv 443 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVL 443 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeE
Confidence 788887654210 168999999887644332 223344444 89
Q ss_pred EEeccccCCCCCchHHHHHHHHhc-CCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCce
Q 002357 187 IFDEIHYMKDRERGVVWEESIIFL-PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGL 265 (931)
Q Consensus 187 ViDEaH~l~~~~~g~~~~~ii~~l-~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~ 265 (931)
||||+|.+- ......+..++..+ .....+|+||||+|.... ..++..+... ..+. ...+.|+-....... ..
T Consensus 444 IiDEVHAyD-~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r-~~L~~a~~~~-~~~~--~~~~YPlvt~~~~~~--~~ 516 (878)
T PRK09694 444 IVDEVHAYD-AYMYGLLEAVLKAQAQAGGSVILLSATLPATLK-QKLLDTYGGH-DPVE--LSSAYPLITWRGVNG--AQ 516 (878)
T ss_pred EEechhhCC-HHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHH-HHHHHHhccc-cccc--ccccccccccccccc--ce
Confidence 999999873 33444556666554 346789999999985532 1222222111 0000 000111100000000 00
Q ss_pred eEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCc-cCCCCCCCCCCHHHHHHHHHH--cCCCcEEEEecCHHHH
Q 002357 266 YLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRM-AKGGSGSGGSDIFKIVKMIME--RKFQPVIVFSFSRREC 342 (931)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~l~~--~~~~~~IVF~~sr~~~ 342 (931)
......... . ....... ..............+++.+.+ ..+.+++|||||++.|
T Consensus 517 ~~~~~~~~~--------------------~---~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~A 573 (878)
T PRK09694 517 RFDLSAHPE--------------------Q---LPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDA 573 (878)
T ss_pred eeecccccc--------------------c---cCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 000000000 0 0000000 000000000111233333332 2567899999999999
Q ss_pred HHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHH----HHHHHH-hcC
Q 002357 343 EQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKE----LVELLF-QEG 417 (931)
Q Consensus 343 ~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~----~v~~~F-~~g 417 (931)
..+++.|.+.+... ..+..+||++.+.+|. .+++.| ++|
T Consensus 574 q~ly~~L~~~~~~~------------------------------------~~v~llHsrf~~~dR~~~E~~vl~~fgk~g 617 (878)
T PRK09694 574 QKLYQRLKELNNTQ------------------------------------VDIDLFHARFTLNDRREKEQRVIENFGKNG 617 (878)
T ss_pred HHHHHHHHhhCCCC------------------------------------ceEEEEeCCCCHHHHHHHHHHHHHHHHhcC
Confidence 99999997632110 1278999999999995 456677 566
Q ss_pred C---ceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCC
Q 002357 418 L---VKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGK 472 (931)
Q Consensus 418 ~---i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~ 472 (931)
. .+|||||+++++|||++ .+++|.... | ...|+||+||+||.+.
T Consensus 618 ~r~~~~ILVaTQViE~GLDId-~DvlItdla--------P--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 618 KRNQGRILVATQVVEQSLDLD-FDWLITQLC--------P--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CcCCCeEEEECcchhheeecC-CCeEEECCC--------C--HHHHHHHHhccCCCCC
Confidence 5 47999999999999995 688885322 3 5689999999999986
No 94
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.94 E-value=1.6e-25 Score=266.25 Aligned_cols=307 Identities=21% Similarity=0.272 Sum_probs=236.8
Q ss_pred CchhhhccCCCCCCHHHHHHHHHHhc----C--CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHH
Q 002357 65 YNGEMAKTYSFELDPFQRVSVACLER----N--ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRE 138 (931)
Q Consensus 65 ~~~~~~~~~~f~l~~~Q~~ai~~l~~----g--~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~ 138 (931)
....|...|||+-||-|..||..+.+ + .|=+||+..|.|||-+|+-|+..+..+|+.|.+++||.-||.|.|+.
T Consensus 583 ~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~t 662 (1139)
T COG1197 583 WQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYET 662 (1139)
T ss_pred HHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHH
Confidence 67789999999999999999998833 2 57899999999999999999999999999999999999999999999
Q ss_pred HHHhcCC----eEEEecccc-----------cCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHH
Q 002357 139 LHQEFKD----VGLMTGDVT-----------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVW 203 (931)
Q Consensus 139 l~~~~~~----vg~~tGd~~-----------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~ 203 (931)
|++.|.+ |+.+..-.+ .+...||+|+|.-.| .....+.+++++|+||-|+. |+.-
T Consensus 663 FkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEqRF-----GVk~ 732 (1139)
T COG1197 663 FKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQRF-----GVKH 732 (1139)
T ss_pred HHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechhhc-----CccH
Confidence 9999984 444332221 245789999998644 34456899999999999965 7777
Q ss_pred HHHHHhcCCCceEEEeccCC-CChHHHHHHHHhhcCCCeEEEec-CCCCCcceeeeeccCCCceeEeeCccchhchhhHH
Q 002357 204 EESIIFLPPAIKMVFLSATM-SNATQFAEWICHLHKQPCHVVYT-DFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFV 281 (931)
Q Consensus 204 ~~ii~~l~~~~q~v~lSAT~-~n~~e~~~~l~~~~~~~~~v~~~-~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (931)
.+-+..+..++.++-||||+ |....+ ...| -....++.+ +.+..|++.|+.+.+ +..+
T Consensus 733 KEkLK~Lr~~VDvLTLSATPIPRTL~M-sm~G---iRdlSvI~TPP~~R~pV~T~V~~~d---------------~~~i- 792 (1139)
T COG1197 733 KEKLKELRANVDVLTLSATPIPRTLNM-SLSG---IRDLSVIATPPEDRLPVKTFVSEYD---------------DLLI- 792 (1139)
T ss_pred HHHHHHHhccCcEEEeeCCCCcchHHH-HHhc---chhhhhccCCCCCCcceEEEEecCC---------------hHHH-
Confidence 88899999999999999998 544331 2221 123334433 234445555554322 0001
Q ss_pred HHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHH
Q 002357 282 KLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKD 361 (931)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~ 361 (931)
...+++.+. .++++-.-.|..+..+.++..|+.+-...
T Consensus 793 -----------------------------------reAI~REl~--RgGQvfYv~NrV~~Ie~~~~~L~~LVPEa----- 830 (1139)
T COG1197 793 -----------------------------------REAILRELL--RGGQVFYVHNRVESIEKKAERLRELVPEA----- 830 (1139)
T ss_pred -----------------------------------HHHHHHHHh--cCCEEEEEecchhhHHHHHHHHHHhCCce-----
Confidence 123344433 35678888899999999999998743321
Q ss_pred HHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEE
Q 002357 362 TVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVF 441 (931)
Q Consensus 362 ~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI 441 (931)
.|++-||.|...+-+.++..|-+|..+|||||.+.+.|||+|+++.+|
T Consensus 831 --------------------------------rI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiI 878 (1139)
T COG1197 831 --------------------------------RIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTII 878 (1139)
T ss_pred --------------------------------EEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEE
Confidence 289999999999999999999999999999999999999999999766
Q ss_pred e-cceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 442 T-AVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 442 ~-~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
. ..- -...++..|..||.||... +|+|++++.+.
T Consensus 879 Ie~AD--------~fGLsQLyQLRGRVGRS~~--~AYAYfl~p~~ 913 (1139)
T COG1197 879 IERAD--------KFGLAQLYQLRGRVGRSNK--QAYAYFLYPPQ 913 (1139)
T ss_pred Eeccc--------cccHHHHHHhccccCCccc--eEEEEEeecCc
Confidence 3 222 3345789999999999887 69999998753
No 95
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=4.1e-25 Score=255.91 Aligned_cols=327 Identities=20% Similarity=0.130 Sum_probs=193.9
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC-CeEEEeccccc-----------CCCCCee
Q 002357 95 LVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDVTL-----------SPNASCL 162 (931)
Q Consensus 95 lv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~vg~~tGd~~~-----------~~~~~Il 162 (931)
++.||||||||.+|+.++...+..++++||++|+++|+.|+++.|++.|+ ++.+++|+.+. +.+++|+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IV 80 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVV 80 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 47899999999999888888888999999999999999999999999887 78889987653 2468999
Q ss_pred EecHHHHHHHHhcCccccCcccEEEEeccccCCCCCc-hHH--HHHH--HHhcCCCceEEEeccCCCChHHHHHHHHhhc
Q 002357 163 VMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRER-GVV--WEES--IIFLPPAIKMVFLSATMSNATQFAEWICHLH 237 (931)
Q Consensus 163 V~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~-g~~--~~~i--i~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~ 237 (931)
|+|+..+. ..+.++++||+||+|....++. +.. ...+ +.....+.++|++|||++ .+ .|.....
T Consensus 81 VGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPs-le---s~~~~~~ 149 (505)
T TIGR00595 81 IGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPS-LE---SYHNAKQ 149 (505)
T ss_pred ECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCC-HH---HHHHHhc
Confidence 99998663 2478999999999998864322 111 1111 222345789999999965 22 2322222
Q ss_pred CCCeEEEecCCCC----CcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCC
Q 002357 238 KQPCHVVYTDFRP----TPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSG 313 (931)
Q Consensus 238 ~~~~~v~~~~~rp----~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (931)
+ ......-..|+ .|..+. ++...... .
T Consensus 150 g-~~~~~~l~~r~~~~~~p~v~v------------id~~~~~~------------------------------------~ 180 (505)
T TIGR00595 150 K-AYRLLVLTRRVSGRKPPEVKL------------IDMRKEPR------------------------------------Q 180 (505)
T ss_pred C-CeEEeechhhhcCCCCCeEEE------------Eecccccc------------------------------------c
Confidence 2 22222222221 111111 11110000 0
Q ss_pred CCCHHHHHHHHHHc--CCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHH---------HHHHHHHhhcC-----cc
Q 002357 314 GSDIFKIVKMIMER--KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVE---------QVFQNAVDCLN-----EE 377 (931)
Q Consensus 314 ~~~~~~ll~~l~~~--~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~---------~~~~~~~~~l~-----~~ 377 (931)
..--..+++.+.+. .+.++|||+|++..+-.+...=+..-..++.....+. -..-.+..... -.
T Consensus 181 ~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~ 260 (505)
T TIGR00595 181 SFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCG 260 (505)
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCC
Confidence 00011233333221 4568999999987543322221111000000000000 00000000000 00
Q ss_pred ----cCCChhHHhHHHHhh-----ccceeccCCCCHHHH--HHHHHHHhcCCceEEEecchhhcccCCCCcEEEEeccee
Q 002357 378 ----DRNLPAIELMLPLLK-----RGIAVHHSGLLPVIK--ELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKK 446 (931)
Q Consensus 378 ----d~~l~~~~~l~~~l~-----~gi~~~hg~l~~~~R--~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~ 446 (931)
...-++++.+.+.+. ..|...|+++....+ +.+++.|++|+.+|||+|+++++|+|+|++++|+.. +
T Consensus 261 s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl--~ 338 (505)
T TIGR00595 261 SEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVL--D 338 (505)
T ss_pred CCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEE--c
Confidence 000122333333332 257889999987766 899999999999999999999999999999976421 3
Q ss_pred cCCCCCcc------cCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 447 WDGDSHRY------IGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 447 ~d~~~~~~------~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
+|..-+.| .....|+|++|||||.+.. |.+++....+
T Consensus 339 aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~--g~viiqt~~p 381 (505)
T TIGR00595 339 ADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDP--GQVIIQTYNP 381 (505)
T ss_pred CcccccCcccchHHHHHHHHHHHHhccCCCCCC--CEEEEEeCCC
Confidence 33311111 1356799999999998874 7777765444
No 96
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.93 E-value=6.5e-26 Score=237.85 Aligned_cols=295 Identities=19% Similarity=0.222 Sum_probs=194.4
Q ss_pred EEEEEcCchhhHHHHHHHHHH---hcC--CeE--EEecccc-------cCCCCCeeEecHHHHHHHHhcCccccCcccEE
Q 002357 121 RVIYTSPLKALSNQKYRELHQ---EFK--DVG--LMTGDVT-------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (931)
Q Consensus 121 rvl~l~P~kaL~~Q~~~~l~~---~~~--~vg--~~tGd~~-------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (931)
.++|+-|.++|+.|.+..+++ ... .+. ++.|++. ...+.+|+|+||+++..++..+...+.+..++
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFl 367 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFL 367 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEE
Confidence 689999999999999985544 333 232 4555443 34578999999999999999999999999999
Q ss_pred EEeccccCCCCCchHHHHHHHHhcC------CCceEEEeccCCCCh--HHHHHHHHhhcCCCeEEEecCCCCCc--ceee
Q 002357 187 IFDEIHYMKDRERGVVWEESIIFLP------PAIKMVFLSATMSNA--TQFAEWICHLHKQPCHVVYTDFRPTP--LQHY 256 (931)
Q Consensus 187 ViDEaH~l~~~~~g~~~~~ii~~l~------~~~q~v~lSAT~~n~--~e~~~~l~~~~~~~~~v~~~~~rp~p--l~~~ 256 (931)
|+||++.++..++...+......+| ...|.+..|||+.-- ..+++.+..+ |+.+-......+| ..|+
T Consensus 368 vlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhf---ptwVdLkgeD~vpetvHhv 444 (725)
T KOG0349|consen 368 VLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHF---PTWVDLKGEDLVPETVHHV 444 (725)
T ss_pred EecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccC---ceeEecccccccchhhccc
Confidence 9999999987766666666555554 367899999998522 2233333322 3333322222222 2333
Q ss_pred eeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCC--CCCCCCHH------HHHHHHHHcC
Q 002357 257 VFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGS--GSGGSDIF------KIVKMIMERK 328 (931)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------~ll~~l~~~~ 328 (931)
+..... ... ..+...-..+......... +...+. ....+... .-+..+.+..
T Consensus 445 v~lv~p-------~~d-----~sw~~lr~~i~td~vh~kd--------n~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~ 504 (725)
T KOG0349|consen 445 VKLVCP-------SVD-----GSWCDLRQFIETDKVHTKD--------NLLPGQVSPENPSSATKILKGEYGVVAIRRHA 504 (725)
T ss_pred eeecCC-------ccC-----ccHHHHhhhhccCCccccc--------ccccccCCCCChhhhhHHhcCchhhhhhhhhc
Confidence 322110 001 1122221111110000000 000000 00111111 1234455667
Q ss_pred CCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHH
Q 002357 329 FQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKE 408 (931)
Q Consensus 329 ~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~ 408 (931)
..++||||.++..|+.+-+.+...+-.. ....++||+..|.+|.
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~------------------------------------~scvclhgDrkP~Erk 548 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKH------------------------------------YSCVCLHGDRKPDERK 548 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCcc------------------------------------ceeEEEecCCChhHHH
Confidence 8899999999999999999997654322 1257799999999999
Q ss_pred HHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCC
Q 002357 409 LVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDE 484 (931)
Q Consensus 409 ~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~ 484 (931)
.-++.|+.+.++.||||+++++|+|+..+-.+|+... |-+...|+||+||.||+.+- |.+|-++..
T Consensus 549 ~nle~Fkk~dvkflictdvaargldi~g~p~~invtl--------pd~k~nyvhrigrvgraerm--glaislvat 614 (725)
T KOG0349|consen 549 ANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTL--------PDDKTNYVHRIGRVGRAERM--GLAISLVAT 614 (725)
T ss_pred HHHHhhhhcCeEEEEEehhhhccccccCCceEEEEec--------Ccccchhhhhhhccchhhhc--ceeEEEeec
Confidence 9999999999999999999999999999999995444 66778899999999999874 666655543
No 97
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.92 E-value=1.1e-23 Score=261.18 Aligned_cols=332 Identities=14% Similarity=0.131 Sum_probs=199.3
Q ss_pred CCCCHHHHHHHHHHh----c-CCcEEEEcCCCCCcHHHHHHHHHHHHh--CCCEEEEEcCchhhHHHHHHHHHHhcCCeE
Q 002357 75 FELDPFQRVSVACLE----R-NESVLVSAHTSAGKTAVAEYAIAMAFR--DKQRVIYTSPLKALSNQKYRELHQEFKDVG 147 (931)
Q Consensus 75 f~l~~~Q~~ai~~l~----~-g~~vlv~apTGsGKTl~~~l~i~~~l~--~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg 147 (931)
+.++++|.+||..+. + .+++++++|||||||.++...+...++ ...+|||++|+++|+.|..+.|.......+
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 569999999998763 2 467999999999999987666655554 347999999999999999999998743211
Q ss_pred -----EE--e--cccccCCCCCeeEecHHHHHHHHhcC-----ccccCcccEEEEeccccCCC--C-------------C
Q 002357 148 -----LM--T--GDVTLSPNASCLVMTTEILRGMLYRG-----SEVLKEVAWVIFDEIHYMKD--R-------------E 198 (931)
Q Consensus 148 -----~~--t--Gd~~~~~~~~IlV~Tpe~L~~~l~~~-----~~~l~~l~~vViDEaH~l~~--~-------------~ 198 (931)
+. . ++.....+..|+|+|.+.+.+.+... ...+..+++||+||||+... . .
T Consensus 492 ~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~ 571 (1123)
T PRK11448 492 QTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLD 571 (1123)
T ss_pred cchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhh
Confidence 11 1 12223446899999999998765322 13467899999999998631 0 0
Q ss_pred chHHHHHHHHhcCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEec-----CCCCC----cceeeeeccCCCceeEee
Q 002357 199 RGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYT-----DFRPT----PLQHYVFPVGGSGLYLVV 269 (931)
Q Consensus 199 ~g~~~~~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~-----~~rp~----pl~~~~~~~~~~~~~~~~ 269 (931)
+...|..++.+.. ..+|||||||... ..+.+ +.+++.+.. +.--+ |..... .....++....
T Consensus 572 ~~~~yr~iL~yFd--A~~IGLTATP~r~--t~~~F----G~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t-~~~~~gi~~~~ 642 (1123)
T PRK11448 572 YVSKYRRVLDYFD--AVKIGLTATPALH--TTEIF----GEPVYTYSYREAVIDGYLIDHEPPIRIET-RLSQEGIHFEK 642 (1123)
T ss_pred HHHHHHHHHhhcC--ccEEEEecCCccc--hhHHh----CCeeEEeeHHHHHhcCCcccCcCCEEEEE-Eeccccccccc
Confidence 1345677776553 4689999999632 11222 233332221 11111 111000 00000000000
Q ss_pred Cc--------cchhc----hhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCC-CCCCHHHHHHHHHHcCCCcEEEEe
Q 002357 270 DE--------KEQFR----EDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGS-GGSDIFKIVKMIMERKFQPVIVFS 336 (931)
Q Consensus 270 ~~--------~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~l~~~~~~~~IVF~ 336 (931)
.+ .+... ++........+...... .. ....+..+++.+.....+++||||
T Consensus 643 ~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~-----------------~~~~~~i~~~l~~~l~~~~~~KtiIF~ 705 (1123)
T PRK11448 643 GEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVIT-----------------ESFNRVVCEELAKYLDPTGEGKTLIFA 705 (1123)
T ss_pred cchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhh-----------------HHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 00 00000 00000000000000000 00 001122344444334557999999
Q ss_pred cCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhc
Q 002357 337 FSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQE 416 (931)
Q Consensus 337 ~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~ 416 (931)
.++.+|+.++..|.+.. .. . . |+ .-...+..+||+.. .++.+++.|++
T Consensus 706 ~s~~HA~~i~~~L~~~f-~~-------------~---~-------~~------~~~~~v~~itg~~~--~~~~li~~Fk~ 753 (1123)
T PRK11448 706 ATDAHADMVVRLLKEAF-KK-------------K---Y-------GQ------VEDDAVIKITGSID--KPDQLIRRFKN 753 (1123)
T ss_pred cCHHHHHHHHHHHHHHH-Hh-------------h---c-------CC------cCccceEEEeCCcc--chHHHHHHHhC
Confidence 99999999998886421 00 0 0 00 00012456788875 46789999999
Q ss_pred CCc-eEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCC
Q 002357 417 GLV-KALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGK 472 (931)
Q Consensus 417 g~i-~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~ 472 (931)
|.. +|+|+++++++|+|+|.+++|| .+++ +.|...|+||+||+.|...
T Consensus 754 ~~~p~IlVsvdmL~TG~DvP~v~~vV----f~rp----vkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 754 ERLPNIVVTVDLLTTGIDVPSICNLV----FLRR----VRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred CCCCeEEEEecccccCCCcccccEEE----EecC----CCCHHHHHHHHhhhccCCc
Confidence 887 7999999999999999999988 4444 7788999999999999754
No 98
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=6.2e-23 Score=239.38 Aligned_cols=359 Identities=25% Similarity=0.400 Sum_probs=268.3
Q ss_pred CCHHHHHHHHHH-hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCC-----eEEEe
Q 002357 77 LDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKD-----VGLMT 150 (931)
Q Consensus 77 l~~~Q~~ai~~l-~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~-----vg~~t 150 (931)
.+|+|.++++.+ ..+++|+|.||+|||||.|++++++. -....+++|+.|..+.+..+++.|.+.|+. +..++
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ 1222 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLT 1222 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecC
Confidence 489999999987 78899999999999999999999887 344579999999999999999999998873 44577
Q ss_pred cccccC----CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHH------HHhcCCCceEEEec
Q 002357 151 GDVTLS----PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES------IIFLPPAIKMVFLS 220 (931)
Q Consensus 151 Gd~~~~----~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~i------i~~l~~~~q~v~lS 220 (931)
|+.+.+ ...+++|+||+.+-.+ + ..+.+++.|.||.|.+++ ..|.+++-+ -..+.++++++++|
T Consensus 1223 ge~s~~lkl~~~~~vii~tpe~~d~l--q---~iQ~v~l~i~d~lh~igg-~~g~v~evi~S~r~ia~q~~k~ir~v~ls 1296 (1674)
T KOG0951|consen 1223 GETSLDLKLLQKGQVIISTPEQWDLL--Q---SIQQVDLFIVDELHLIGG-VYGAVYEVICSMRYIASQLEKKIRVVALS 1296 (1674)
T ss_pred CccccchHHhhhcceEEechhHHHHH--h---hhhhcceEeeehhhhhcc-cCCceEEEEeeHHHHHHHHHhheeEEEee
Confidence 877765 3589999999998765 1 578899999999999984 457665533 23567899999999
Q ss_pred cCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCC
Q 002357 221 ATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGK 300 (931)
Q Consensus 221 AT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 300 (931)
..+.|+.++ ++.. ...+.-+..+.||+|+...+...+ ...+...+.++.
T Consensus 1297 ~~lana~d~---ig~s-~~~v~Nf~p~~R~~Pl~i~i~~~~---------------~~~~~~~~~am~------------ 1345 (1674)
T KOG0951|consen 1297 SSLANARDL---IGAS-SSGVFNFSPSVRPVPLEIHIQSVD---------------ISHFESRMLAMT------------ 1345 (1674)
T ss_pred hhhccchhh---cccc-ccceeecCcccCCCceeEEEEEec---------------cchhHHHHHHhh------------
Confidence 999999986 4433 335666778899999986554322 111222221111
Q ss_pred CCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCC
Q 002357 301 ASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRN 380 (931)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~ 380 (931)
.....++.+... ++.|++||+++|+.|..+|..+-...+... ...+-....+
T Consensus 1346 -------------~~~~~ai~~~a~--~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~--~~~l~~~~e~----------- 1397 (1674)
T KOG0951|consen 1346 -------------KPTYTAIVRHAG--NRKPAIVFLPTRKHARLVAVDLVTFSHADE--PDYLLSELEE----------- 1397 (1674)
T ss_pred -------------hhHHHHHHHHhc--CCCCeEEEeccchhhhhhhhccchhhccCc--HHHHHHHHhc-----------
Confidence 112223333322 667999999999999999988866544431 1111111111
Q ss_pred ChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCC--cccCHH
Q 002357 381 LPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSH--RYIGSG 458 (931)
Q Consensus 381 l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~--~~~s~~ 458 (931)
.-..+.+.|+.||+ |-|+++.+.+.+-.+|..|.|.|+|...- -+|+-+.+--||+++...|||..+ .+.+..
T Consensus 1398 --~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~ 1472 (1674)
T KOG0951|consen 1398 --CDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIA 1472 (1674)
T ss_pred --chHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEecceeecccccccccCchh
Confidence 22457788999999 99999999999999999999999998888 999999999999999999999865 467889
Q ss_pred HHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhhccCCChHHHHHhhHHHH
Q 002357 459 EYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLEGQFTAEHVIKNSFHQF 513 (931)
Q Consensus 459 ~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~~~~~~~e~~l~~sf~~~ 513 (931)
+..||.|+|.|.| .|++++... .....++++... +..+.-+....+..
T Consensus 1473 ~ll~m~G~a~~~~-----k~vi~~~~~-~k~yykkfl~e~-lPves~lq~~lhd~ 1520 (1674)
T KOG0951|consen 1473 ELLQMVGLASGAG-----KCVIMCHTP-KKEYYKKFLYEP-LPVESHLQHCLHDN 1520 (1674)
T ss_pred HHHHHhhhhcCCc-----cEEEEecCc-hHHHHHHhccCc-CchHHHHHHHHHhh
Confidence 9999999999954 589998876 555667766543 44554445444443
No 99
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.91 E-value=1.1e-22 Score=241.51 Aligned_cols=313 Identities=22% Similarity=0.289 Sum_probs=232.8
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHH-hCCCEEEEEcCchhhHHHHHHHHHHhcC-----CeEE-E
Q 002357 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFK-----DVGL-M 149 (931)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l-~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-----~vg~-~ 149 (931)
-+....+.+.++.+++.++++||||||||...-..++..- ..++++.++-|.|--|...++++.+.++ .||. +
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~i 130 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSI 130 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEE
Confidence 4667778888999999999999999999997544444443 4567999999999888888888877766 3665 4
Q ss_pred ecccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHH-------HHhcCCCceEEEeccC
Q 002357 150 TGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES-------IIFLPPAIKMVFLSAT 222 (931)
Q Consensus 150 tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~i-------i~~l~~~~q~v~lSAT 222 (931)
..+....+...|-+||.++|..++...+. ++.+++|||||+| +|....+-+ +...++..++|.+|||
T Consensus 131 Rfe~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaH-----ERSl~tDilLgllk~~~~~rr~DLKiIimSAT 204 (845)
T COG1643 131 RFESKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAH-----ERSLNTDILLGLLKDLLARRRDDLKLIIMSAT 204 (845)
T ss_pred EeeccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchh-----hhhHHHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence 45666788899999999999999987665 8999999999999 344333333 3334557999999999
Q ss_pred CCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCC
Q 002357 223 MSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKAS 302 (931)
Q Consensus 223 ~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 302 (931)
+ |...|..+++. +-++..+.|.-|++.+..+... .. . .+..
T Consensus 205 l-d~~rfs~~f~~-----apvi~i~GR~fPVei~Y~~~~~--------~d--~---~l~~-------------------- 245 (845)
T COG1643 205 L-DAERFSAYFGN-----APVIEIEGRTYPVEIRYLPEAE--------AD--Y---ILLD-------------------- 245 (845)
T ss_pred c-CHHHHHHHcCC-----CCEEEecCCccceEEEecCCCC--------cc--h---hHHH--------------------
Confidence 9 56667777753 4456666676776643322110 00 0 0111
Q ss_pred CCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCCh
Q 002357 303 GRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLP 382 (931)
Q Consensus 303 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~ 382 (931)
.+...+........+.++||.+..++.+.+++.|.+..+..+
T Consensus 246 -------------ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~------------------------- 287 (845)
T COG1643 246 -------------AIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDD------------------------- 287 (845)
T ss_pred -------------HHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCC-------------------------
Confidence 122233333344567899999999999999999976222100
Q ss_pred hHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEec----ceecCCCC------C
Q 002357 383 AIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA----VKKWDGDS------H 452 (931)
Q Consensus 383 ~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~----~~~~d~~~------~ 452 (931)
--|..+||.|++.+...+++--..|.-+|++||++++.+|.+|++.+||.+ ...||... .
T Consensus 288 ----------~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~ 357 (845)
T COG1643 288 ----------LEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLET 357 (845)
T ss_pred ----------cEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeE
Confidence 116789999999999999888888888899999999999999999999974 23466542 3
Q ss_pred cccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 453 RYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 453 ~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
.|+|-++..||+|||||.+. |+||-++++.
T Consensus 358 ~~ISqAsA~QRaGRAGR~~p---GicyRLyse~ 387 (845)
T COG1643 358 EPISKASADQRAGRAGRTGP---GICYRLYSEE 387 (845)
T ss_pred EEechhhhhhhccccccCCC---ceEEEecCHH
Confidence 46789999999999999986 9999999864
No 100
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.90 E-value=5.7e-22 Score=221.90 Aligned_cols=317 Identities=20% Similarity=0.285 Sum_probs=225.8
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHH-HhCCCEEEEEcCchhhHHHHHHHHHHhcC-----CeEEE
Q 002357 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPLKALSNQKYRELHQEFK-----DVGLM 149 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~-l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-----~vg~~ 149 (931)
+.+.+-.+.+..+.+++.++|.++||||||..--.-+.++ +...+++.++.|.|--|.-.+++.....+ .||..
T Consensus 51 PI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~ 130 (674)
T KOG0922|consen 51 PIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYT 130 (674)
T ss_pred CHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeE
Confidence 3456667788999999999999999999998633333333 34455699999999888888777776655 46653
Q ss_pred ec-ccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc------CCCceEEEeccC
Q 002357 150 TG-DVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL------PPAIKMVFLSAT 222 (931)
Q Consensus 150 tG-d~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l------~~~~q~v~lSAT 222 (931)
.. +....+...|.+||-+.|.+-+...+ .++++++||+|||| +|...-+-++..| .+..++|.+|||
T Consensus 131 IRFed~ts~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAH-----ERsl~TDiLlGlLKki~~~R~~LklIimSAT 204 (674)
T KOG0922|consen 131 IRFEDSTSKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAH-----ERSLHTDILLGLLKKILKKRPDLKLIIMSAT 204 (674)
T ss_pred EEecccCCCceeEEEecchHHHHHHhcCC-ccccccEEEEechh-----hhhhHHHHHHHHHHHHHhcCCCceEEEEeee
Confidence 21 33344578999999999987766554 48899999999999 4454444444333 356799999999
Q ss_pred CCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCC
Q 002357 223 MSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKAS 302 (931)
Q Consensus 223 ~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 302 (931)
+ |+..|.++++. +.++.-..|.-|++.+..+.+ . .+|...
T Consensus 205 l-da~kfS~yF~~-----a~i~~i~GR~fPVei~y~~~p----------~-----~dYv~a------------------- 244 (674)
T KOG0922|consen 205 L-DAEKFSEYFNN-----APILTIPGRTFPVEILYLKEP----------T-----ADYVDA------------------- 244 (674)
T ss_pred e-cHHHHHHHhcC-----CceEeecCCCCceeEEeccCC----------c-----hhhHHH-------------------
Confidence 9 67778887764 445555566666654332211 1 011110
Q ss_pred CCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCCh
Q 002357 303 GRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLP 382 (931)
Q Consensus 303 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~ 382 (931)
.+..+++.....+.+-++||....++.+.+++.|.+.--. +.+..+.
T Consensus 245 -------------~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~------------------~~~~~~~-- 291 (674)
T KOG0922|consen 245 -------------ALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKS------------------LPEDCPE-- 291 (674)
T ss_pred -------------HHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhh------------------ccccCcc--
Confidence 1112222223346678999999999999999998653111 1111100
Q ss_pred hHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEec----ceecCCCC------C
Q 002357 383 AIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA----VKKWDGDS------H 452 (931)
Q Consensus 383 ~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~----~~~~d~~~------~ 452 (931)
-+..+||+|+.+++..|+..-..|.-||++||++++..|.+|.+..||.+ ...|++.. .
T Consensus 292 -----------~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v 360 (674)
T KOG0922|consen 292 -----------LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIV 360 (674)
T ss_pred -----------eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeE
Confidence 14678999999999999998889999999999999999999999999863 34566642 3
Q ss_pred cccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 453 RYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 453 ~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
.|+|-.+-.||+|||||.|. |.|+-++++.
T Consensus 361 ~~ISkasA~QRaGRAGRt~p---GkcyRLYte~ 390 (674)
T KOG0922|consen 361 VPISKASANQRAGRAGRTGP---GKCYRLYTES 390 (674)
T ss_pred EechHHHHhhhcccCCCCCC---ceEEEeeeHH
Confidence 47799999999999999986 9999999875
No 101
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=2.6e-21 Score=228.42 Aligned_cols=124 Identities=17% Similarity=0.165 Sum_probs=101.2
Q ss_pred hccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC----C
Q 002357 70 AKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----D 145 (931)
Q Consensus 70 ~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~----~ 145 (931)
...+|..+++.|.-.--.+.+|+ ++.++||+|||++|.+|++.....|..|++++||+.||.|.++.+..++. .
T Consensus 76 ~R~lg~~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLt 153 (896)
T PRK13104 76 LRTLGLRHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLT 153 (896)
T ss_pred HHHcCCCcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCce
Confidence 34567778888877665665554 89999999999999999997776788899999999999999999998876 6
Q ss_pred eEEEecccccC-----CCCCeeEecHHHH-HHHHhcCc-cc-----cCcccEEEEeccccCC
Q 002357 146 VGLMTGDVTLS-----PNASCLVMTTEIL-RGMLYRGS-EV-----LKEVAWVIFDEIHYMK 195 (931)
Q Consensus 146 vg~~tGd~~~~-----~~~~IlV~Tpe~L-~~~l~~~~-~~-----l~~l~~vViDEaH~l~ 195 (931)
+|+++|+.+.. -.++|+|+||++| .+.|..+. .. .+.+.++|+||||.|+
T Consensus 154 v~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 154 VGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred EEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 78888887542 2589999999999 77776552 22 3689999999999875
No 102
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.89 E-value=1.7e-22 Score=209.11 Aligned_cols=168 Identities=23% Similarity=0.279 Sum_probs=143.7
Q ss_pred CCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC-----CCEEEEEcCchhhHHHHHHHHHHhcC--
Q 002357 73 YSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD-----KQRVIYTSPLKALSNQKYRELHQEFK-- 144 (931)
Q Consensus 73 ~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~-----~~rvl~l~P~kaL~~Q~~~~l~~~~~-- 144 (931)
++|+ |+++|.++++.+.+|++++++||||+|||++|.++++..+.. +.+++|++|+++|+.|+...++.+..
T Consensus 17 ~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 17 LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 6777 999999999999999999999999999999999998877643 46899999999999999999888754
Q ss_pred --CeEEEeccccc-------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCce
Q 002357 145 --DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIK 215 (931)
Q Consensus 145 --~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q 215 (931)
.+..++|+.+. ..+++|+|+||+.+..++.+....+++++++|+||+|.+.+.+++..+..++..++...|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~ 176 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQ 176 (203)
T ss_pred CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccE
Confidence 56677887653 237899999999999998888777899999999999999988889999999999999999
Q ss_pred EEEeccCCCChHHHHHHHHhhcCCCeE
Q 002357 216 MVFLSATMSNATQFAEWICHLHKQPCH 242 (931)
Q Consensus 216 ~v~lSAT~~n~~e~~~~l~~~~~~~~~ 242 (931)
++++|||+++. ..+++.....+++.
T Consensus 177 ~~~~SAT~~~~--~~~~~~~~~~~~~~ 201 (203)
T cd00268 177 TLLFSATMPKE--VRDLARKFLRNPVR 201 (203)
T ss_pred EEEEeccCCHH--HHHHHHHHCCCCEE
Confidence 99999999854 44666555554443
No 103
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=8.2e-21 Score=224.21 Aligned_cols=352 Identities=16% Similarity=0.130 Sum_probs=218.7
Q ss_pred hhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC----
Q 002357 69 MAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK---- 144 (931)
Q Consensus 69 ~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~---- 144 (931)
....++..|++.|.-.--.+.+|+ +..++||+|||++|.+|++.....|..|-+++|+..||.|.++.+..++.
T Consensus 74 ~~R~lg~~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGl 151 (830)
T PRK12904 74 SKRVLGMRHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGL 151 (830)
T ss_pred HHHHhCCCCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCC
Confidence 344678889999988877777665 89999999999999999864444566788999999999999999998876
Q ss_pred CeEEEecccccC-----CCCCeeEecHHHH-HHHHhcCc------cccCcccEEEEeccccCC-CCCchH----------
Q 002357 145 DVGLMTGDVTLS-----PNASCLVMTTEIL-RGMLYRGS------EVLKEVAWVIFDEIHYMK-DRERGV---------- 201 (931)
Q Consensus 145 ~vg~~tGd~~~~-----~~~~IlV~Tpe~L-~~~l~~~~------~~l~~l~~vViDEaH~l~-~~~~g~---------- 201 (931)
.+|+++|+.+.. -.++|+++|+..| .+.|.... ..++.+.++|+||||.|+ |..+.+
T Consensus 152 sv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~ 231 (830)
T PRK12904 152 SVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDS 231 (830)
T ss_pred eEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCCcc
Confidence 678888877643 2589999999999 77775443 236789999999999775 332211
Q ss_pred -----HHHHHHHhcCC--------CceEEEeccC-------------CCCh--HHHHHHHHhh-------cCCCeEEEec
Q 002357 202 -----VWEESIIFLPP--------AIKMVFLSAT-------------MSNA--TQFAEWICHL-------HKQPCHVVYT 246 (931)
Q Consensus 202 -----~~~~ii~~l~~--------~~q~v~lSAT-------------~~n~--~e~~~~l~~~-------~~~~~~v~~~ 246 (931)
.+..+...+.. ..+.+.||.. +-+. .++..|+... ..+.-+++..
T Consensus 232 ~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d 311 (830)
T PRK12904 232 SELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKD 311 (830)
T ss_pred cHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEEC
Confidence 12223333422 2233444431 1111 1233444321 1111111110
Q ss_pred -------C--CC----------------------CC---------------cceeeeeccCCCceeEeeCccchhchhhH
Q 002357 247 -------D--FR----------------------PT---------------PLQHYVFPVGGSGLYLVVDEKEQFREDNF 280 (931)
Q Consensus 247 -------~--~r----------------------p~---------------pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (931)
. .| .+ .+..-+..-.+.-. . ....+
T Consensus 312 g~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~----t-----e~~E~ 382 (830)
T PRK12904 312 GEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTAD----T-----EAEEF 382 (830)
T ss_pred CEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcH----H-----HHHHH
Confidence 0 00 00 00111211111000 0 00111
Q ss_pred HHHHHHHHhhhcCCCcCCCCCCCCccCCC--CCCCCCCHHHHHHHHHH--cCCCcEEEEecCHHHHHHHHHHhccCCCCC
Q 002357 281 VKLQDTFLKQKIGGRRENGKASGRMAKGG--SGSGGSDIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNT 356 (931)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~l~~--~~~~~~IVF~~sr~~~~~la~~L~~~~~~~ 356 (931)
.+.++. .-...+...+ ..+..... ......++..++..+.+ ..+.|+||||+|+..++.++..|.+.+++.
T Consensus 383 ~~iY~l-~vv~IPtnkp----~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~ 457 (830)
T PRK12904 383 REIYNL-DVVVIPTNRP----MIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPH 457 (830)
T ss_pred HHHhCC-CEEEcCCCCC----eeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCce
Confidence 111100 0000000000 00000000 01223355666666644 577899999999999999999998877763
Q ss_pred hHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCC
Q 002357 357 QEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPA 436 (931)
Q Consensus 357 ~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~ 436 (931)
.++||. +.+|+..+..|+.|...|+|||++++||+|++=
T Consensus 458 ---------------------------------------~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~L 496 (830)
T PRK12904 458 ---------------------------------------NVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKL 496 (830)
T ss_pred ---------------------------------------EeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccC
Confidence 678985 789999999999999999999999999999975
Q ss_pred c--------------------------------------EEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEE
Q 002357 437 K--------------------------------------TVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGIC 478 (931)
Q Consensus 437 ~--------------------------------------~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ 478 (931)
- -+||. +.++-|..-=-|-.|||||.|.+|.+..
T Consensus 497 gGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVig--------TerhesrRid~QlrGRagRQGdpGss~f 568 (830)
T PRK12904 497 GGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIG--------TERHESRRIDNQLRGRSGRQGDPGSSRF 568 (830)
T ss_pred CCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEe--------cccCchHHHHHHhhcccccCCCCCceeE
Confidence 3 13441 3446666778899999999999988877
Q ss_pred EEEeCCc
Q 002357 479 IIMVDEQ 485 (931)
Q Consensus 479 ii~~~~~ 485 (931)
|+-..+.
T Consensus 569 ~lSleD~ 575 (830)
T PRK12904 569 YLSLEDD 575 (830)
T ss_pred EEEcCcH
Confidence 7766554
No 104
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.88 E-value=4.8e-22 Score=199.28 Aligned_cols=147 Identities=27% Similarity=0.420 Sum_probs=128.3
Q ss_pred CHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCC--EEEEEcCchhhHHHHHHHHHHhcC----CeEEEec
Q 002357 78 DPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ--RVIYTSPLKALSNQKYRELHQEFK----DVGLMTG 151 (931)
Q Consensus 78 ~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~--rvl~l~P~kaL~~Q~~~~l~~~~~----~vg~~tG 151 (931)
||+|.++++.+.+|+++++.||||+|||+++.++++..+..+. +++|++|+++|++|+++.+..++. ++..++|
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 6899999999999999999999999999999999998886644 999999999999999999999987 4777888
Q ss_pred ccccC--------CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcC--CCceEEEecc
Q 002357 152 DVTLS--------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP--PAIKMVFLSA 221 (931)
Q Consensus 152 d~~~~--------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~--~~~q~v~lSA 221 (931)
+.+.. .+++|+|+||+++.+++..+...+.++++|||||+|.+.+..++..+..++..+. ++.|++++||
T Consensus 81 ~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SA 160 (169)
T PF00270_consen 81 GQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSA 160 (169)
T ss_dssp TSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEES
T ss_pred cccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEee
Confidence 77532 4699999999999999877544566799999999999998888888888887763 3689999999
Q ss_pred CCC
Q 002357 222 TMS 224 (931)
Q Consensus 222 T~~ 224 (931)
|++
T Consensus 161 T~~ 163 (169)
T PF00270_consen 161 TLP 163 (169)
T ss_dssp SST
T ss_pred CCC
Confidence 998
No 105
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.88 E-value=2.3e-21 Score=210.69 Aligned_cols=289 Identities=22% Similarity=0.323 Sum_probs=217.6
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccC-----CCCCeeEec
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLS-----PNASCLVMT 165 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~-----~~~~IlV~T 165 (931)
.+-++-++||.||||. -+++.+...++.+|.-|.+-|+.++|+++.+..-.+.++||..... ..+..+=+|
T Consensus 191 RkIi~H~GPTNSGKTy----~ALqrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~~~~~~~~~~a~hvScT 266 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTY----RALQRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEERRFVLDNGNPAQHVSCT 266 (700)
T ss_pred heEEEEeCCCCCchhH----HHHHHHhhhccceecchHHHHHHHHHHHhhhcCCCccccccceeeecCCCCCcccceEEE
Confidence 3557789999999995 4466777788999999999999999999999999999999976532 136777788
Q ss_pred HHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc-CCCceEEEeccCCCChHHHHHHHHhhcCCCeEEE
Q 002357 166 TEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL-PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 244 (931)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l-~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~ 244 (931)
-|++ ..-..+++.|+||+++|.|..||..|...+.-+ .+++.+.|=-|-+ ++-.-+....++.+.+.
T Consensus 267 VEM~--------sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsvl----dlV~~i~k~TGd~vev~ 334 (700)
T KOG0953|consen 267 VEMV--------SVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSVL----DLVRKILKMTGDDVEVR 334 (700)
T ss_pred EEEe--------ecCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchHH----HHHHHHHhhcCCeeEEE
Confidence 8754 123468999999999999999999998876543 4566666543333 34444544555444433
Q ss_pred ecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHH
Q 002357 245 YTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMI 324 (931)
Q Consensus 245 ~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 324 (931)
...|-.|+... ..++..+
T Consensus 335 -~YeRl~pL~v~-------------------------------------------------------------~~~~~sl 352 (700)
T KOG0953|consen 335 -EYERLSPLVVE-------------------------------------------------------------ETALGSL 352 (700)
T ss_pred -eecccCcceeh-------------------------------------------------------------hhhhhhh
Confidence 33444444210 0111122
Q ss_pred HHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCH
Q 002357 325 MERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLP 404 (931)
Q Consensus 325 ~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~ 404 (931)
..-..+-+|| |+|++....+...+.+.+.. .+++++|+++|
T Consensus 353 ~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~--------------------------------------k~aVIYGsLPP 393 (700)
T KOG0953|consen 353 SNLKPGDCVV-AFSKKDIFTVKKKIEKAGNH--------------------------------------KCAVIYGSLPP 393 (700)
T ss_pred ccCCCCCeEE-EeehhhHHHHHHHHHHhcCc--------------------------------------ceEEEecCCCC
Confidence 2223345666 99999999999888764433 26899999999
Q ss_pred HHHHHHHHHHhc--CCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCC-CceEEEEE
Q 002357 405 VIKELVELLFQE--GLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKD-DRGICIIM 481 (931)
Q Consensus 405 ~~R~~v~~~F~~--g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~-~~g~~ii~ 481 (931)
+-|..--.+|++ +..+||||||+++||+|+.-.++||.+..+|+|....+++..+..|.+|||||.|.. ..|.+-.+
T Consensus 394 eTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl 473 (700)
T KOG0953|consen 394 ETRLAQAALFNDPSNECDVLVASDAIGMGLNLNIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTL 473 (700)
T ss_pred chhHHHHHHhCCCCCccceEEeecccccccccceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEe
Confidence 999999999997 999999999999999999999999999999999999999999999999999999753 45666665
Q ss_pred eCCccCHHHHHhhhhcc
Q 002357 482 VDEQMEMNTLKDMVLEG 498 (931)
Q Consensus 482 ~~~~~~~~~l~~l~~~~ 498 (931)
..+ +...+++.+...
T Consensus 474 ~~e--DL~~L~~~l~~p 488 (700)
T KOG0953|consen 474 HSE--DLKLLKRILKRP 488 (700)
T ss_pred eHh--hHHHHHHHHhCC
Confidence 544 567777777654
No 106
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.86 E-value=6.1e-20 Score=223.68 Aligned_cols=362 Identities=14% Similarity=0.114 Sum_probs=217.8
Q ss_pred CCCCHHHHHHHHHH----hcCCcEEEEcCCCCCcHHHHHHHHHHHHh---CCCEEEEEcCchhhHHHHHHHHHHhcC--C
Q 002357 75 FELDPFQRVSVACL----ERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEFK--D 145 (931)
Q Consensus 75 f~l~~~Q~~ai~~l----~~g~~vlv~apTGsGKTl~~~l~i~~~l~---~~~rvl~l~P~kaL~~Q~~~~l~~~~~--~ 145 (931)
.+|.|||.+++..+ .+|.+.|++..+|.|||+.+...+..... ..+++|||||. +|..||.+++.++++ .
T Consensus 168 ~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~ 246 (1033)
T PLN03142 168 GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVLR 246 (1033)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCCc
Confidence 36999999999876 46789999999999999976544433221 24679999997 777889999999988 5
Q ss_pred eEEEeccccc----------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCce
Q 002357 146 VGLMTGDVTL----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIK 215 (931)
Q Consensus 146 vg~~tGd~~~----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q 215 (931)
+..++|+... ....+|+|+|++.+...... ..--.+++||+||||++.+. .......+..+.. ..
T Consensus 247 v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L~a-~~ 321 (1033)
T PLN03142 247 AVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLFST-NY 321 (1033)
T ss_pred eEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCH--HHHHHHHHHHhhc-Cc
Confidence 6667776421 23579999999988754321 11225789999999999865 3445556666653 45
Q ss_pred EEEeccCCC--ChHHHHHHHHhhcCCCeEE-------Ee-cC--------------CCCCccee----e--eeccCCCce
Q 002357 216 MVFLSATMS--NATQFAEWICHLHKQPCHV-------VY-TD--------------FRPTPLQH----Y--VFPVGGSGL 265 (931)
Q Consensus 216 ~v~lSAT~~--n~~e~~~~l~~~~~~~~~v-------~~-~~--------------~rp~pl~~----~--~~~~~~~~~ 265 (931)
.++||+||- +..++-..+..+......- +. .. .+|.-+.. . -+|.. ...
T Consensus 322 RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK-~e~ 400 (1033)
T PLN03142 322 RLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPK-KET 400 (1033)
T ss_pred EEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCc-eeE
Confidence 688999982 3334433333221110000 00 00 00000000 0 00000 000
Q ss_pred eEeeCccchhchhhHHHHHHH----H-------------Hhh--hcCCCcCCCCC-CC-CccCCC-CCCCCCC---HHHH
Q 002357 266 YLVVDEKEQFREDNFVKLQDT----F-------------LKQ--KIGGRRENGKA-SG-RMAKGG-SGSGGSD---IFKI 320 (931)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~----l-------------~~~--~~~~~~~~~~~-~~-~~~~~~-~~~~~~~---~~~l 320 (931)
.+.+... ......|...... + ... ...++.-..+. .+ ....+. ......+ +..+
T Consensus 401 iv~v~LS-~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkL 479 (1033)
T PLN03142 401 ILKVGMS-QMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKL 479 (1033)
T ss_pred EEeeCCC-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHH
Confidence 0111100 1111111111100 0 000 00000000000 00 000000 0001122 2233
Q ss_pred HHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccC
Q 002357 321 VKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHS 400 (931)
Q Consensus 321 l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg 400 (931)
+..+. ..+.++|||+......+.+...|...++. +..+||
T Consensus 480 L~~Lk-~~g~KVLIFSQft~~LdiLed~L~~~g~~---------------------------------------y~rIdG 519 (1033)
T PLN03142 480 LPKLK-ERDSRVLIFSQMTRLLDILEDYLMYRGYQ---------------------------------------YCRIDG 519 (1033)
T ss_pred HHHHH-hcCCeEEeehhHHHHHHHHHHHHHHcCCc---------------------------------------EEEECC
Confidence 33333 25679999999999888888888665543 577899
Q ss_pred CCCHHHHHHHHHHHhcC---CceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceE
Q 002357 401 GLLPVIKELVELLFQEG---LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGI 477 (931)
Q Consensus 401 ~l~~~~R~~v~~~F~~g---~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~ 477 (931)
+++..+|+.+++.|++. ..-+|++|.+++.|||+..+++|| .||. +++|....|++||+.|.|+.....
T Consensus 520 sts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VI----iyD~----dWNP~~d~QAidRaHRIGQkk~V~ 591 (1033)
T PLN03142 520 NTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVI----LYDS----DWNPQVDLQAQDRAHRIGQKKEVQ 591 (1033)
T ss_pred CCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEE----EeCC----CCChHHHHHHHHHhhhcCCCceEE
Confidence 99999999999999753 346789999999999999999999 6777 888899999999999999988888
Q ss_pred EEEEeCCcc-CHHHHH
Q 002357 478 CIIMVDEQM-EMNTLK 492 (931)
Q Consensus 478 ~ii~~~~~~-~~~~l~ 492 (931)
++.++.... +...+.
T Consensus 592 VyRLIt~gTIEEkIle 607 (1033)
T PLN03142 592 VFRFCTEYTIEEKVIE 607 (1033)
T ss_pred EEEEEeCCcHHHHHHH
Confidence 888887653 443433
No 107
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=5e-20 Score=216.73 Aligned_cols=363 Identities=18% Similarity=0.173 Sum_probs=219.3
Q ss_pred hhhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC---
Q 002357 68 EMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK--- 144 (931)
Q Consensus 68 ~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~--- 144 (931)
.....++..|++.|.-+.-.+..|+ +....||+|||+++.+|++.....|..|-+++|+--||.|-++.+..++.
T Consensus 72 a~~R~~g~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LG 149 (796)
T PRK12906 72 GAKRVLGLRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLG 149 (796)
T ss_pred HHHHHhCCCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcC
Confidence 3445678889999988877777766 99999999999999999999999999999999999999999999888766
Q ss_pred -CeEEEecccccC-----CCCCeeEecHHHH-----HHHHh--cCccccCcccEEEEeccccCC-CCCchH---------
Q 002357 145 -DVGLMTGDVTLS-----PNASCLVMTTEIL-----RGMLY--RGSEVLKEVAWVIFDEIHYMK-DRERGV--------- 201 (931)
Q Consensus 145 -~vg~~tGd~~~~-----~~~~IlV~Tpe~L-----~~~l~--~~~~~l~~l~~vViDEaH~l~-~~~~g~--------- 201 (931)
.||+++|+.+.. -.++|+.+|...+ ++-+. ......+.+.+.|+||||.++ |..+.+
T Consensus 150 l~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~ 229 (796)
T PRK12906 150 LTVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEK 229 (796)
T ss_pred CeEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCCc
Confidence 788888876543 2689999998654 33221 112235678999999999765 322211
Q ss_pred ------HHHHHHHhcCC-------------------CceEEEeccC----------CCCh-----HHHHHHHHhh-----
Q 002357 202 ------VWEESIIFLPP-------------------AIKMVFLSAT----------MSNA-----TQFAEWICHL----- 236 (931)
Q Consensus 202 ------~~~~ii~~l~~-------------------~~q~v~lSAT----------~~n~-----~e~~~~l~~~----- 236 (931)
.+..+...+.. ..+.+.+|.. ++|. ..+..|+...
T Consensus 230 ~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~ 309 (796)
T PRK12906 230 ATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANY 309 (796)
T ss_pred chHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHH
Confidence 11122222211 1122233210 1111 1133444321
Q ss_pred --cCCCeEEEecC---------CCCCcceeeeeccCC-------CceeEeeCccc---hhchhhHHHHHHHHHhhhcCCC
Q 002357 237 --HKQPCHVVYTD---------FRPTPLQHYVFPVGG-------SGLYLVVDEKE---QFREDNFVKLQDTFLKQKIGGR 295 (931)
Q Consensus 237 --~~~~~~v~~~~---------~rp~pl~~~~~~~~~-------~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~ 295 (931)
..+.-+++..+ .|..|-. .|..+. .++. +-++.. .....+|-+.+..+....+...
T Consensus 310 l~~~d~dYiV~d~~V~ivD~~TGR~~~gr--~ws~GLHQaieaKe~v~-i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~ 386 (796)
T PRK12906 310 IMLKDIDYVVQDGEVLIVDEFTGRVMEGR--RYSDGLHQAIEAKEGVK-IQEENQTLATITYQNFFRMYKKLSGMTGTAK 386 (796)
T ss_pred HHhcCCcEEEECCEEEEEeCCCCCcCCCC--ccChHHHHHHHHhcCCC-cCCCceeeeeehHHHHHHhcchhhccCCCCH
Confidence 11111121110 0111100 000000 0000 000000 0111222222222211110000
Q ss_pred c----------------CCCCCCCCccCCC--CCCCCCCHHHHHHHHHH--cCCCcEEEEecCHHHHHHHHHHhccCCCC
Q 002357 296 R----------------ENGKASGRMAKGG--SGSGGSDIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFN 355 (931)
Q Consensus 296 ~----------------~~~~~~~~~~~~~--~~~~~~~~~~ll~~l~~--~~~~~~IVF~~sr~~~~~la~~L~~~~~~ 355 (931)
. +..+...+..... -.....++..+++.+.. ..+.|+||||+|+..++.++..|.+.+++
T Consensus 387 ~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~ 466 (796)
T PRK12906 387 TEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIP 466 (796)
T ss_pred HHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCC
Confidence 0 0000000000000 01223355677777743 37899999999999999999999887776
Q ss_pred ChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCC
Q 002357 356 TQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMP 435 (931)
Q Consensus 356 ~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip 435 (931)
. .++||++...+++.+...++.|. |+|||++++||+|++
T Consensus 467 ~---------------------------------------~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~ 505 (796)
T PRK12906 467 H---------------------------------------AVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIK 505 (796)
T ss_pred e---------------------------------------eEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCC
Confidence 3 68899999888888888888886 999999999999995
Q ss_pred ---CcE-----EEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCC
Q 002357 436 ---AKT-----VVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDE 484 (931)
Q Consensus 436 ---~~~-----vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~ 484 (931)
++. +|| .++. |.+...|.|+.|||||.|..|.+..|+-.++
T Consensus 506 l~~~V~~~GGLhVI----~te~----pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 506 LGPGVKELGGLAVI----GTER----HESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred CCcchhhhCCcEEE----eeec----CCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 888 999 5555 8899999999999999999766555554443
No 108
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=5.3e-20 Score=203.32 Aligned_cols=318 Identities=19% Similarity=0.260 Sum_probs=218.6
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHH-H-hCCCEEEEEcCchhhHHHHHHHHHHhcC-----CeE
Q 002357 75 FELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMA-F-RDKQRVIYTSPLKALSNQKYRELHQEFK-----DVG 147 (931)
Q Consensus 75 f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~-l-~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-----~vg 147 (931)
.+.++|-.+.+.++..++.+++.|.||||||...---+..+ + +.|.++-++.|.|--+..++.+..+..+ .||
T Consensus 264 LPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVG 343 (902)
T KOG0923|consen 264 LPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVG 343 (902)
T ss_pred CCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccc
Confidence 34577788889999999999999999999998621112221 2 3456699999999999888877766554 344
Q ss_pred EE--ecccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHH------HHhcCCCceEEEe
Q 002357 148 LM--TGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES------IIFLPPAIKMVFL 219 (931)
Q Consensus 148 ~~--tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~i------i~~l~~~~q~v~l 219 (931)
.- ..|.+- ...-+-+||.++|..-+...+ .|..+++||+||||. |.-...-+ |....+..+++..
T Consensus 344 YsIRFEdcTS-ekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHE-----RTL~TDILfgLvKDIar~RpdLKllIs 416 (902)
T KOG0923|consen 344 YSIRFEDCTS-EKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHE-----RTLHTDILFGLVKDIARFRPDLKLLIS 416 (902)
T ss_pred eEEEeccccC-cceeeeeecchhHHHHHhccc-cccceeEEEeehhhh-----hhhhhhHHHHHHHHHHhhCCcceEEee
Confidence 42 223222 345566999999876655443 488999999999993 33333322 2345678999999
Q ss_pred ccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCC
Q 002357 220 SATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENG 299 (931)
Q Consensus 220 SAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 299 (931)
|||+ ++..|..+++ .+.++.-..|.-|+..+.-..+ ..+|..+.
T Consensus 417 SAT~-DAekFS~fFD-----dapIF~iPGRRyPVdi~Yt~~P---------------EAdYldAa--------------- 460 (902)
T KOG0923|consen 417 SATM-DAEKFSAFFD-----DAPIFRIPGRRYPVDIFYTKAP---------------EADYLDAA--------------- 460 (902)
T ss_pred cccc-CHHHHHHhcc-----CCcEEeccCcccceeeecccCC---------------chhHHHHH---------------
Confidence 9998 7788888876 3455555666566554332111 01111110
Q ss_pred CCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccC
Q 002357 300 KASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDR 379 (931)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~ 379 (931)
+..++........+-+|||.......+...+.|.. .+..|...-+
T Consensus 461 -----------------i~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~------------------~~~~LGski~ 505 (902)
T KOG0923|consen 461 -----------------IVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKE------------------RCRRLGSKIR 505 (902)
T ss_pred -----------------HhhheeeEeccCCccEEEEeccHHHHHHHHHHHHH------------------HHHHhccccc
Confidence 11112222234567899999998887777666643 1222222222
Q ss_pred CChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEec----ceecCCCC----
Q 002357 380 NLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA----VKKWDGDS---- 451 (931)
Q Consensus 380 ~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~----~~~~d~~~---- 451 (931)
.+ =|..+|+.|+...+.+|++.-..|.-+|++||++++..|.++++..||.. ...|++.+
T Consensus 506 el------------iv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmes 573 (902)
T KOG0923|consen 506 EL------------IVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMES 573 (902)
T ss_pred eE------------EEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCcee
Confidence 21 16788999999999999999999999999999999999999999999863 12345442
Q ss_pred --CcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 452 --HRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 452 --~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
..|+|-++-.||+|||||.|. |.||-+++..
T Consensus 574 L~v~piSKAsA~QRaGRAGRtgP---GKCfRLYt~~ 606 (902)
T KOG0923|consen 574 LLVTPISKASANQRAGRAGRTGP---GKCFRLYTAW 606 (902)
T ss_pred EEEeeechhhhhhhccccCCCCC---CceEEeechh
Confidence 347888999999999999997 9999999854
No 109
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.84 E-value=3.1e-19 Score=209.30 Aligned_cols=361 Identities=20% Similarity=0.171 Sum_probs=221.2
Q ss_pred CCCHHHHHHHHHHhcC----CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC-CeEEEe
Q 002357 76 ELDPFQRVSVACLERN----ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMT 150 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~~g----~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~vg~~t 150 (931)
.+++-|..|+..+... ...++.+.||||||-+|+-+|...+..|+.+|+++|-.+|..|...+|+..|+ ++++++
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlH 277 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLH 277 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhc
Confidence 5899999999998554 67899999999999999999999999999999999999999999999999999 899999
Q ss_pred ccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCC---CchHHHHHHHH--hcCCCc
Q 002357 151 GDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDR---ERGVVWEESII--FLPPAI 214 (931)
Q Consensus 151 Gd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~---~~g~~~~~ii~--~l~~~~ 214 (931)
++.+. +.++.|+|+|-..+. ..++++++||+||-|.-.-. ....+...+-. .-..++
T Consensus 278 S~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~ 350 (730)
T COG1198 278 SGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENA 350 (730)
T ss_pred ccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCC
Confidence 88763 457899999976553 45889999999999965422 12222333322 223578
Q ss_pred eEEEeccCCCChHHHHHHHHhhcCCCeEEEecCC--CCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhc
Q 002357 215 KMVFLSATMSNATQFAEWICHLHKQPCHVVYTDF--RPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKI 292 (931)
Q Consensus 215 q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~--rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 292 (931)
++|+-|||++ +..|.....+...++..+.. +..+....+ +|.......
T Consensus 351 pvvLgSATPS----LES~~~~~~g~y~~~~L~~R~~~a~~p~v~i-----------iDmr~e~~~--------------- 400 (730)
T COG1198 351 PVVLGSATPS----LESYANAESGKYKLLRLTNRAGRARLPRVEI-----------IDMRKEPLE--------------- 400 (730)
T ss_pred CEEEecCCCC----HHHHHhhhcCceEEEEccccccccCCCcceE-----------Eeccccccc---------------
Confidence 9999999987 44666654443333333321 111222111 111110000
Q ss_pred CCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHH--cCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHH-
Q 002357 293 GGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQN- 369 (931)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~- 369 (931)
.+ .. --..+++.+.+ ..+.++|+|.|.|..+-.+...=+..-..++...... .+.+
T Consensus 401 ---------------~~-~~---lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~l--t~H~~ 459 (730)
T COG1198 401 ---------------TG-RS---LSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPL--TLHKA 459 (730)
T ss_pred ---------------cC-cc---CCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcce--EEecC
Confidence 00 00 11233444432 2557899999988655433322222111111000000 0000
Q ss_pred -------HHh-----------hcCc-ccCCChhHHhHHHHhhc-----cceeccCCCCH--HHHHHHHHHHhcCCceEEE
Q 002357 370 -------AVD-----------CLNE-EDRNLPAIELMLPLLKR-----GIAVHHSGLLP--VIKELVELLFQEGLVKALF 423 (931)
Q Consensus 370 -------~~~-----------~l~~-~d~~l~~~~~l~~~l~~-----gi~~~hg~l~~--~~R~~v~~~F~~g~i~vLv 423 (931)
++. +-+. --..-++++.+.+.+.+ .|..+.++... ..-+..+..|.+|+.+|||
T Consensus 460 ~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILi 539 (730)
T COG1198 460 TGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILI 539 (730)
T ss_pred CCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeee
Confidence 000 0000 00011233433333332 35555565443 3346778899999999999
Q ss_pred ecchhhcccCCCCcEEEE--ecceecCCCCCcc--cCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhhc
Q 002357 424 ATETFAMGLNMPAKTVVF--TAVKKWDGDSHRY--IGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLE 497 (931)
Q Consensus 424 aT~~la~GIdip~~~vVI--~~~~~~d~~~~~~--~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~~ 497 (931)
.|.+++.|.|+|+++.|. ..+.-....++|. .+..-++|-+|||||.+.. |.+++....+ +...++.+..+
T Consensus 540 GTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~--G~VvIQT~~P-~hp~i~~~~~~ 614 (730)
T COG1198 540 GTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKP--GEVVIQTYNP-DHPAIQALKRG 614 (730)
T ss_pred cchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCC--CeEEEEeCCC-CcHHHHHHHhc
Confidence 999999999999999653 2222222222222 2345689999999999874 7777766554 44555555554
No 110
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.84 E-value=1.7e-19 Score=213.12 Aligned_cols=368 Identities=20% Similarity=0.242 Sum_probs=239.8
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHH-Hh--CCCEEEEEcCchhhHHHHHHHHHHhcC-----CeEE
Q 002357 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMA-FR--DKQRVIYTSPLKALSNQKYRELHQEFK-----DVGL 148 (931)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~-l~--~~~rvl~l~P~kaL~~Q~~~~l~~~~~-----~vg~ 148 (931)
.+..+.+.++++.+++.+++++.||+|||...---|+.. +. ...+++++.|.|--|--++++....-+ .||.
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGY 253 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGY 253 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeE
Confidence 577889999999999999999999999998644444433 22 356899999998777777776655432 4555
Q ss_pred Eec-ccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCC-CCCchHHHHHHHHhcCCCceEEEeccCCCCh
Q 002357 149 MTG-DVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMK-DRERGVVWEESIIFLPPAIKMVFLSATMSNA 226 (931)
Q Consensus 149 ~tG-d~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~-~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n~ 226 (931)
-.+ +........+++||++.|.+.+..+ ..+.++..||+||+|.=. +.++--..-..+....++.++|+||||+ |+
T Consensus 254 qvrl~~~~s~~t~L~fcTtGvLLr~L~~~-~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~-da 331 (924)
T KOG0920|consen 254 QVRLESKRSRETRLLFCTTGVLLRRLQSD-PTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATL-DA 331 (924)
T ss_pred EEeeecccCCceeEEEecHHHHHHHhccC-cccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeec-ch
Confidence 332 3333446889999999999988764 458899999999999432 3333333333344456899999999999 46
Q ss_pred HHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCc-
Q 002357 227 TQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRM- 305 (931)
Q Consensus 227 ~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~- 305 (931)
..|.++++ .+.++....+.-|+..+... + .+..................+..
T Consensus 332 e~fs~YF~-----~~pvi~i~grtfpV~~~fLE------------------D----il~~~~~~~~~~~~~~~~~~~~~~ 384 (924)
T KOG0920|consen 332 ELFSDYFG-----GCPVITIPGRTFPVKEYFLE------------------D----ILSKTGYVSEDDSARSGPERSQLR 384 (924)
T ss_pred HHHHHHhC-----CCceEeecCCCcchHHHHHH------------------H----HHHHhcccccccccccccccCccc
Confidence 77888877 33444445554454322210 0 00000000000000000000000
Q ss_pred ---cCC-CCCCCCCCHHHHHHHHHHc-CCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCC
Q 002357 306 ---AKG-GSGSGGSDIFKIVKMIMER-KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRN 380 (931)
Q Consensus 306 ---~~~-~~~~~~~~~~~ll~~l~~~-~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~ 380 (931)
..- ....+..-+..++..+... ..+.+|||.+....+..+...|.......+.
T Consensus 385 ~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~---------------------- 442 (924)
T KOG0920|consen 385 LARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADS---------------------- 442 (924)
T ss_pred cccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccc----------------------
Confidence 000 0001223345556666554 3678999999999999999998643222110
Q ss_pred ChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEec----ceecCCCC-----
Q 002357 381 LPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA----VKKWDGDS----- 451 (931)
Q Consensus 381 l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~----~~~~d~~~----- 451 (931)
.+--|...|+.|+..+++.|...-..|.-+|++||++++.+|.+|++..||.+ ...||+..
T Consensus 443 ----------~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l 512 (924)
T KOG0920|consen 443 ----------LKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCL 512 (924)
T ss_pred ----------cceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchh
Confidence 11126778999999999999999999999999999999999999999999964 33577653
Q ss_pred -CcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhhccCCChHHHHHhhHHHHH
Q 002357 452 -HRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLEGQFTAEHVIKNSFHQFQ 514 (931)
Q Consensus 452 -~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~~~~~~~e~~l~~sf~~~~ 514 (931)
-.|.+...-.||.|||||.-. |+||-+++..... +++. ...+.+++.....+..
T Consensus 513 ~~~wvSkAna~QR~GRAGRv~~---G~cy~L~~~~~~~----~~~~--~~q~PEilR~pL~~l~ 567 (924)
T KOG0920|consen 513 LLSWVSKANAKQRRGRAGRVRP---GICYHLYTRSRYE----KLML--AYQLPEILRTPLEELC 567 (924)
T ss_pred heeeccccchHHhcccccCccC---CeeEEeechhhhh----hccc--ccCChHHHhChHHHhh
Confidence 235678889999999999875 9999998865221 1111 1345556665555543
No 111
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.83 E-value=1.9e-19 Score=218.35 Aligned_cols=312 Identities=20% Similarity=0.220 Sum_probs=199.2
Q ss_pred CCCHHHHHHHHHHhc---CC-cEEEEcCCCCCcHHHHHHHHHHHHhC----CCEEEEEcCchhhHHHHHHHHHHhcCCeE
Q 002357 76 ELDPFQRVSVACLER---NE-SVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYTSPLKALSNQKYRELHQEFKDVG 147 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~~---g~-~vlv~apTGsGKTl~~~l~i~~~l~~----~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg 147 (931)
...++|..++..+.+ .. .+++.||||+|||.+++......+.. ..|++|+.|++++++++++.++..++.-+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 358899999988743 24 78899999999999988776665544 68999999999999999999999877322
Q ss_pred E----Eeccccc----CC-----------------CCCeeEecHHHHHHHHhcCccc--c--CcccEEEEeccccCCCCC
Q 002357 148 L----MTGDVTL----SP-----------------NASCLVMTTEILRGMLYRGSEV--L--KEVAWVIFDEIHYMKDRE 198 (931)
Q Consensus 148 ~----~tGd~~~----~~-----------------~~~IlV~Tpe~L~~~l~~~~~~--l--~~l~~vViDEaH~l~~~~ 198 (931)
+ .+|.... .+ -..+.++||-....+....... + =-.+.+||||+|.+.+..
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 2 2332211 00 1233444554443322211111 1 134789999999998763
Q ss_pred chHHHHHHHHhc-CCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhch
Q 002357 199 RGVVWEESIIFL-PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFRE 277 (931)
Q Consensus 199 ~g~~~~~ii~~l-~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~ 277 (931)
--..+..++..+ ..+..+|++|||+|.... +.+.........+..... ..|... ...........
T Consensus 355 ~~~~l~~~i~~l~~~g~~ill~SATlP~~~~--~~l~~~~~~~~~~~~~~~-~~~~~~--------e~~~~~~~~~~--- 420 (733)
T COG1203 355 MLAALLALLEALAEAGVPVLLMSATLPPFLK--EKLKKALGKGREVVENAK-FCPKED--------EPGLKRKERVD--- 420 (733)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEecCCCHHHH--HHHHHHHhcccceecccc-cccccc--------ccccccccchh---
Confidence 223333333333 357899999999996642 444443332222222111 000000 00000000000
Q ss_pred hhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHH--HHcCCCcEEEEecCHHHHHHHHHHhccCCCC
Q 002357 278 DNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMI--MERKFQPVIVFSFSRRECEQHAMSMSKLDFN 355 (931)
Q Consensus 278 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l--~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~ 355 (931)
+.. ... ....... .-..+.+++|-|||+..|.+++..|...+..
T Consensus 421 --~~~-------------------------------~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~ 466 (733)
T COG1203 421 --VED-------------------------------GPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPK 466 (733)
T ss_pred --hhh-------------------------------hhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCC
Confidence 000 000 0011111 1125678999999999999999999875541
Q ss_pred ChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHh----cCCceEEEecchhhcc
Q 002357 356 TQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQ----EGLVKALFATETFAMG 431 (931)
Q Consensus 356 ~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~----~g~i~vLvaT~~la~G 431 (931)
+..+||.+...+|...++.+. .+...|+|||++.+.|
T Consensus 467 ---------------------------------------v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEag 507 (733)
T COG1203 467 ---------------------------------------VLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAG 507 (733)
T ss_pred ---------------------------------------EEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEE
Confidence 689999999999999888654 5678899999999999
Q ss_pred cCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 432 LNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 432 Idip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
+|+. .+++|+. +....+.+||+||++|.|....|.+++.....
T Consensus 508 vDid-fd~mITe----------~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 508 VDID-FDVLITE----------LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred eccc-cCeeeec----------CCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 9996 7888854 44567799999999999976677777776554
No 112
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=8.7e-19 Score=206.40 Aligned_cols=124 Identities=16% Similarity=0.167 Sum_probs=99.1
Q ss_pred hccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC----C
Q 002357 70 AKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----D 145 (931)
Q Consensus 70 ~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~----~ 145 (931)
...++..+++.|.-.--.+.+| -+..++||.|||++|.+|++.....|..|.|++|+..||.|-++.+..++. .
T Consensus 76 ~R~lgm~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGls 153 (908)
T PRK13107 76 KRVFEMRHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLT 153 (908)
T ss_pred HHHhCCCcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCe
Confidence 3467888888887665555554 489999999999999999988777888899999999999999988887765 6
Q ss_pred eEEEecccccC-----CCCCeeEecHHHH-HHHHhcC-c-----cccCcccEEEEeccccCC
Q 002357 146 VGLMTGDVTLS-----PNASCLVMTTEIL-RGMLYRG-S-----EVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 146 vg~~tGd~~~~-----~~~~IlV~Tpe~L-~~~l~~~-~-----~~l~~l~~vViDEaH~l~ 195 (931)
||+++|+.+.. -.++|+++||..| .+.|..+ . ...+.+.++|+||||.++
T Consensus 154 v~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 154 VGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred EEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 77787776532 2689999999998 6666544 1 123788999999999876
No 113
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=3.2e-19 Score=197.28 Aligned_cols=313 Identities=20% Similarity=0.257 Sum_probs=208.6
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHH-HHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC-----CeEE--
Q 002357 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVA-EYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-----DVGL-- 148 (931)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~-~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-----~vg~-- 148 (931)
...++.+.+..+..++-|+|.+.||||||... .|....-...++-+-++.|.|.-+-.+++++....+ .||.
T Consensus 357 vf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsI 436 (1042)
T KOG0924|consen 357 VFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSI 436 (1042)
T ss_pred hHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEE
Confidence 34567777778888999999999999999862 222223334567889999999999999998887764 3444
Q ss_pred EecccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHH------hcCCCceEEEeccC
Q 002357 149 MTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII------FLPPAIKMVFLSAT 222 (931)
Q Consensus 149 ~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~------~l~~~~q~v~lSAT 222 (931)
...|++ .+...|-+||-++|..-.... ..+.+++.||+||||.= .....-++. .-..+.++|..|||
T Consensus 437 RFEdvT-~~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHER-----slNtDilfGllk~~larRrdlKliVtSAT 509 (1042)
T KOG0924|consen 437 RFEDVT-SEDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHER-----SLNTDILFGLLKKVLARRRDLKLIVTSAT 509 (1042)
T ss_pred EeeecC-CCceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhc-----ccchHHHHHHHHHHHHhhccceEEEeecc
Confidence 223333 256778899999987544333 24789999999999932 222222222 12357899999999
Q ss_pred CCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCC
Q 002357 223 MSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKAS 302 (931)
Q Consensus 223 ~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 302 (931)
+ |+..|+++++. |..+.-..|.-|++......+ . +.|..+.
T Consensus 510 m-~a~kf~nfFgn-----~p~f~IpGRTyPV~~~~~k~p----------~-----eDYVeaa------------------ 550 (1042)
T KOG0924|consen 510 M-DAQKFSNFFGN-----CPQFTIPGRTYPVEIMYTKTP----------V-----EDYVEAA------------------ 550 (1042)
T ss_pred c-cHHHHHHHhCC-----CceeeecCCccceEEEeccCc----------h-----HHHHHHH------------------
Confidence 9 67778888873 333444455555443221100 0 1111110
Q ss_pred CCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhc----cCCCCChHHHHHHHHHHHHHHhhcCccc
Q 002357 303 GRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMS----KLDFNTQEEKDTVEQVFQNAVDCLNEED 378 (931)
Q Consensus 303 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~----~~~~~~~~e~~~i~~~~~~~~~~l~~~d 378 (931)
+.+.+..-.....+-++||.......+..+..+. ......
T Consensus 551 --------------vkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~---------------------- 594 (1042)
T KOG0924|consen 551 --------------VKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAP---------------------- 594 (1042)
T ss_pred --------------HhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCC----------------------
Confidence 0001111111234679999998776655554443 211110
Q ss_pred CCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEec----ceecCCC----
Q 002357 379 RNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA----VKKWDGD---- 450 (931)
Q Consensus 379 ~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~----~~~~d~~---- 450 (931)
...-.|..+++.|+...+.++++.-..|.-+++|||++++..+.+|.+.+||.. ..-|++.
T Consensus 595 -----------~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D 663 (1042)
T KOG0924|consen 595 -----------TTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMD 663 (1042)
T ss_pred -----------CCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccc
Confidence 000126678999999999999988889999999999999999999999999852 2334443
Q ss_pred --CCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 451 --SHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 451 --~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
..-|+|.+.--||+|||||.|. |.|+-++++.
T Consensus 664 ~L~~~pIS~AnA~QRaGRAGRt~p---G~cYRlYTe~ 697 (1042)
T KOG0924|consen 664 ALQIVPISQANADQRAGRAGRTGP---GTCYRLYTED 697 (1042)
T ss_pred eeEEEechhccchhhccccCCCCC---cceeeehhhh
Confidence 2457888999999999999986 9999999874
No 114
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=6.6e-18 Score=199.17 Aligned_cols=121 Identities=13% Similarity=0.202 Sum_probs=103.8
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC----CeEEEe
Q 002357 75 FELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----DVGLMT 150 (931)
Q Consensus 75 f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~----~vg~~t 150 (931)
|.++|+|.++++.+..++++++.++||+|||++|.+|++..+..+..+++++||++||.|.++.+..++. .++.+.
T Consensus 91 ~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~ 170 (970)
T PRK12899 91 WDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLV 170 (970)
T ss_pred CCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 3469999999999999999999999999999999999997775666799999999999999999888764 678888
Q ss_pred cccccCC-----CCCeeEecHHHH-HHHHhcCcccc-------CcccEEEEeccccCC
Q 002357 151 GDVTLSP-----NASCLVMTTEIL-RGMLYRGSEVL-------KEVAWVIFDEIHYMK 195 (931)
Q Consensus 151 Gd~~~~~-----~~~IlV~Tpe~L-~~~l~~~~~~l-------~~l~~vViDEaH~l~ 195 (931)
|+.+... .++|+|+||++| .+++..+...+ +.+.++|+||||.|+
T Consensus 171 GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 171 SGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred CCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 8876532 589999999999 88887764433 356899999999886
No 115
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.81 E-value=4.9e-18 Score=201.53 Aligned_cols=123 Identities=20% Similarity=0.269 Sum_probs=102.5
Q ss_pred HHHHHHHHHH--cCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhcc
Q 002357 317 IFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRG 394 (931)
Q Consensus 317 ~~~ll~~l~~--~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 394 (931)
+..++..+.. ..+.++||||+|++.++.++..|.+.++.
T Consensus 428 i~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~--------------------------------------- 468 (655)
T TIGR00631 428 VDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIK--------------------------------------- 468 (655)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccc---------------------------------------
Confidence 3455555543 35678999999999999999999887665
Q ss_pred ceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCC-cccCHHHHHHhhhccCCCCCC
Q 002357 395 IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSH-RYIGSGEYIQMSGRAGRRGKD 473 (931)
Q Consensus 395 i~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~-~~~s~~~y~Qr~GRaGR~G~~ 473 (931)
+.++||++.+.+|..++..|+.|.+.|||||+.+++|+|+|++++|+ .+|...+ .|.+..+|+||+|||||..
T Consensus 469 ~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVv----i~DadifG~p~~~~~~iqriGRagR~~-- 542 (655)
T TIGR00631 469 VRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVA----ILDADKEGFLRSERSLIQTIGRAARNV-- 542 (655)
T ss_pred eeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEE----EeCcccccCCCCHHHHHHHhcCCCCCC--
Confidence 47899999999999999999999999999999999999999999888 4443221 3778899999999999974
Q ss_pred CceEEEEEeCCc
Q 002357 474 DRGICIIMVDEQ 485 (931)
Q Consensus 474 ~~g~~ii~~~~~ 485 (931)
.|.++++++..
T Consensus 543 -~G~vi~~~~~~ 553 (655)
T TIGR00631 543 -NGKVIMYADKI 553 (655)
T ss_pred -CCEEEEEEcCC
Confidence 48888888754
No 116
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.81 E-value=3.4e-18 Score=198.40 Aligned_cols=271 Identities=21% Similarity=0.222 Sum_probs=181.2
Q ss_pred chhhhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCC
Q 002357 66 NGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKD 145 (931)
Q Consensus 66 ~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~ 145 (931)
..-|.+..||+|+..|+-....+.+|++.-+.||||.|||.-.+...+-.-..|+|++|++||..|+.|.++.+.++...
T Consensus 72 ~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~ 151 (1187)
T COG1110 72 EEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAED 151 (1187)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhh
Confidence 33455667999999999999999999999999999999998655544444467899999999999999999999998753
Q ss_pred eE-----E-Eeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHH
Q 002357 146 VG-----L-MTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII 208 (931)
Q Consensus 146 vg-----~-~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~ 208 (931)
.| + ++|..+. +.+.+|+|+|..-|......-.. -++++|++|.+|.++..+ ...+.++.
T Consensus 152 ~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~--~kFdfifVDDVDA~Lkas--kNvDriL~ 227 (1187)
T COG1110 152 AGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK--LKFDFIFVDDVDAILKAS--KNVDRLLR 227 (1187)
T ss_pred cCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc--cCCCEEEEccHHHHHhcc--ccHHHHHH
Confidence 33 1 4454332 34799999999866543322111 268999999999876542 22222222
Q ss_pred hc--------------------------------------------CCCceEEEeccCCCChHH----HHHHHHhhcCCC
Q 002357 209 FL--------------------------------------------PPAIKMVFLSATMSNATQ----FAEWICHLHKQP 240 (931)
Q Consensus 209 ~l--------------------------------------------~~~~q~v~lSAT~~n~~e----~~~~l~~~~~~~ 240 (931)
++ .+.-+++..|||...... |.+.++.-.+.
T Consensus 228 LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~- 306 (1187)
T COG1110 228 LLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGS- 306 (1187)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCccCc-
Confidence 11 123567777777643321 22222211110
Q ss_pred eEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHH
Q 002357 241 CHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKI 320 (931)
Q Consensus 241 ~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 320 (931)
...-+.. +..+ .........+
T Consensus 307 --------~~~~LRN---------IvD~------------------------------------------y~~~~~~e~~ 327 (1187)
T COG1110 307 --------GGEGLRN---------IVDI------------------------------------------YVESESLEKV 327 (1187)
T ss_pred --------cchhhhh---------eeee------------------------------------------eccCccHHHH
Confidence 0000000 0000 0001334455
Q ss_pred HHHHHHcCCCcEEEEecC---HHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhcccee
Q 002357 321 VKMIMERKFQPVIVFSFS---RRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAV 397 (931)
Q Consensus 321 l~~l~~~~~~~~IVF~~s---r~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~ 397 (931)
++.+...+. ..|||++. +..++++++.|.+.|++. ..
T Consensus 328 ~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a---------------------------------------~~ 367 (1187)
T COG1110 328 VELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINA---------------------------------------EL 367 (1187)
T ss_pred HHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceE---------------------------------------EE
Confidence 555555443 58999999 999999999999988874 55
Q ss_pred ccCCCCHHHHHHHHHHHhcCCceEEEecc----hhhcccCCCCcE--EEEecce
Q 002357 398 HHSGLLPVIKELVELLFQEGLVKALFATE----TFAMGLNMPAKT--VVFTAVK 445 (931)
Q Consensus 398 ~hg~l~~~~R~~v~~~F~~g~i~vLvaT~----~la~GIdip~~~--vVI~~~~ 445 (931)
+|++ ++..++.|..|++++||+.. ++.||||+|.+- +||-+.+
T Consensus 368 ~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 368 IHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred eecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 6663 36778899999999999754 789999999865 5665555
No 117
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.80 E-value=2.2e-17 Score=179.65 Aligned_cols=125 Identities=19% Similarity=0.266 Sum_probs=102.0
Q ss_pred CHHHHHHHHHH--cCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhc
Q 002357 316 DIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKR 393 (931)
Q Consensus 316 ~~~~ll~~l~~--~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 393 (931)
.+..++..+.. ..+.+++|-+-|++.++.+..+|...|+.
T Consensus 431 QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gik-------------------------------------- 472 (663)
T COG0556 431 QVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIK-------------------------------------- 472 (663)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCce--------------------------------------
Confidence 34455555543 24589999999999999999999998876
Q ss_pred cceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCC
Q 002357 394 GIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKD 473 (931)
Q Consensus 394 gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~ 473 (931)
+.++|+++...+|..++..++.|.++|||.-+.+-+|+|+|.+++|...+. |-.++ ..|-.+++|-+|||.|.-.
T Consensus 473 -v~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDA--DKeGF-LRse~SLIQtIGRAARN~~- 547 (663)
T COG0556 473 -VRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDA--DKEGF-LRSERSLIQTIGRAARNVN- 547 (663)
T ss_pred -EEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeec--Ccccc-ccccchHHHHHHHHhhccC-
Confidence 689999999999999999999999999999999999999999998753211 21221 3467789999999999765
Q ss_pred CceEEEEEeCCc
Q 002357 474 DRGICIIMVDEQ 485 (931)
Q Consensus 474 ~~g~~ii~~~~~ 485 (931)
|.+|++.+.-
T Consensus 548 --GkvIlYAD~i 557 (663)
T COG0556 548 --GKVILYADKI 557 (663)
T ss_pred --CeEEEEchhh
Confidence 8888887653
No 118
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.79 E-value=2.9e-17 Score=203.65 Aligned_cols=65 Identities=23% Similarity=0.185 Sum_probs=57.4
Q ss_pred CCCCCCHHHHHHHH----HHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHH
Q 002357 73 YSFELDPFQRVSVA----CLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYR 137 (931)
Q Consensus 73 ~~f~l~~~Q~~ai~----~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~ 137 (931)
.+|+++|.|.+.+. .+.+++++++.||||+|||++|++|++.....+.+++|.+||++|..|+..
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~~~~vvi~t~t~~Lq~Ql~~ 310 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAITEKPVVISTNTKVLQSQLLE 310 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHH
Confidence 68999999998666 557789999999999999999999987765577899999999999999865
No 119
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.78 E-value=2.1e-16 Score=189.33 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=100.8
Q ss_pred HHHHHHHHHH--cCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhcc
Q 002357 317 IFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRG 394 (931)
Q Consensus 317 ~~~ll~~l~~--~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 394 (931)
+..++..+.. ..+.++||||+|++.|+.++..|...++.
T Consensus 432 ~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~--------------------------------------- 472 (652)
T PRK05298 432 VDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIK--------------------------------------- 472 (652)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhccee---------------------------------------
Confidence 3445555543 25678999999999999999999887765
Q ss_pred ceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecc-eecCCCCCcccCHHHHHHhhhccCCCCCC
Q 002357 395 IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAV-KKWDGDSHRYIGSGEYIQMSGRAGRRGKD 473 (931)
Q Consensus 395 i~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~-~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~ 473 (931)
+.++||++.+.+|..++..|+.|.+.|||||+.+++|+|+|++++||..+ ..|.. |.+...|+||+||+||. .
T Consensus 473 ~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG~----~~~~~~yiqr~GR~gR~-~- 546 (652)
T PRK05298 473 VRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGF----LRSERSLIQTIGRAARN-V- 546 (652)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCccccc----CCCHHHHHHHhccccCC-C-
Confidence 57899999999999999999999999999999999999999999887322 22222 56889999999999995 3
Q ss_pred CceEEEEEeCC
Q 002357 474 DRGICIIMVDE 484 (931)
Q Consensus 474 ~~g~~ii~~~~ 484 (931)
.|.++++++.
T Consensus 547 -~G~~i~~~~~ 556 (652)
T PRK05298 547 -NGKVILYADK 556 (652)
T ss_pred -CCEEEEEecC
Confidence 4888888874
No 120
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.78 E-value=3.7e-17 Score=196.53 Aligned_cols=144 Identities=19% Similarity=0.184 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHH----hc------CCcEEEEcCCCCCcHHHHHHHHHHHH--hCCCEEEEEcCchhhHHHHHHHHHHhcC
Q 002357 77 LDPFQRVSVACL----ER------NESVLVSAHTSAGKTAVAEYAIAMAF--RDKQRVIYTSPLKALSNQKYRELHQEFK 144 (931)
Q Consensus 77 l~~~Q~~ai~~l----~~------g~~vlv~apTGsGKTl~~~l~i~~~l--~~~~rvl~l~P~kaL~~Q~~~~l~~~~~ 144 (931)
++++|..|+..+ .+ ++..+++.+||||||+++...+...+ ....+||+++|+++|..|+.+.|.....
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~ 318 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQK 318 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCC
Confidence 788999999765 22 35799999999999998877665544 3467999999999999999999999874
Q ss_pred CeEEEeccc------ccCCCCCeeEecHHHHHHHHhcCccc--cCcc-cEEEEeccccCCCCCchHHHHHHHH-hcCCCc
Q 002357 145 DVGLMTGDV------TLSPNASCLVMTTEILRGMLYRGSEV--LKEV-AWVIFDEIHYMKDRERGVVWEESII-FLPPAI 214 (931)
Q Consensus 145 ~vg~~tGd~------~~~~~~~IlV~Tpe~L~~~l~~~~~~--l~~l-~~vViDEaH~l~~~~~g~~~~~ii~-~l~~~~ 214 (931)
......+.. -.+....|+|+|.+.+.+.+...... ...- -+||+||||+... | .|...+. .+| +.
T Consensus 319 ~~~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~---~-~~~~~l~~~~p-~a 393 (667)
T TIGR00348 319 DCAERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY---G-ELAKNLKKALK-NA 393 (667)
T ss_pred CCCcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc---h-HHHHHHHhhCC-CC
Confidence 211111111 01235789999999998644321111 1111 2899999998753 2 3444453 454 57
Q ss_pred eEEEeccCCCC
Q 002357 215 KMVFLSATMSN 225 (931)
Q Consensus 215 q~v~lSAT~~n 225 (931)
.++||||||-.
T Consensus 394 ~~lGfTaTP~~ 404 (667)
T TIGR00348 394 SFFGFTGTPIF 404 (667)
T ss_pred cEEEEeCCCcc
Confidence 89999999953
No 121
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.77 E-value=1.3e-17 Score=191.40 Aligned_cols=340 Identities=14% Similarity=0.108 Sum_probs=193.5
Q ss_pred CCCHHHHHHHHHH----hcC-CcEEEEcCCCCCcHHHHHHHHHHHHhC--CCEEEEEcCchhhHHHHHHHHHHhcC--Ce
Q 002357 76 ELDPFQRVSVACL----ERN-ESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSNQKYRELHQEFK--DV 146 (931)
Q Consensus 76 ~l~~~Q~~ai~~l----~~g-~~vlv~apTGsGKTl~~~l~i~~~l~~--~~rvl~l~P~kaL~~Q~~~~l~~~~~--~v 146 (931)
.++.+|..||..+ .+| ..+|++..||+|||..|.-.|...++. -+|||+++-+++|.+|.+..|..+.+ ..
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~ 244 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTK 244 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCccc
Confidence 4899999999765 444 459999999999999886655555554 47999999999999999999999988 33
Q ss_pred EEEecccccCCCCCeeEecHHHHHHHHhcC-----ccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEecc
Q 002357 147 GLMTGDVTLSPNASCLVMTTEILRGMLYRG-----SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSA 221 (931)
Q Consensus 147 g~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~-----~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSA 221 (931)
-....+......+.|.|+|.+.+...+... +.....+++||+||||+-. ...|..++.++..- .+++||
T Consensus 245 ~n~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~I~dYFdA~--~~gLTA 318 (875)
T COG4096 245 MNKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWSSILDYFDAA--TQGLTA 318 (875)
T ss_pred eeeeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhHHHHHHHHHH--HHhhcc
Confidence 333334444447899999999998776543 2234568999999999754 44577777777533 345599
Q ss_pred CCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCC
Q 002357 222 TMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKA 301 (931)
Q Consensus 222 T~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 301 (931)
|+.+..+... .+.+.+.|++.+.... --...++.+.....+..-.+.. .+.++...+... ............-..
T Consensus 319 TP~~~~d~~T-~~~F~g~Pt~~Yslee--AV~DGfLvpy~vi~i~~~~~~~-G~~~~~~serek-~~g~~i~~dd~~~~~ 393 (875)
T COG4096 319 TPKETIDRST-YGFFNGEPTYAYSLEE--AVEDGFLVPYKVIRIDTDFDLD-GWKPDAGSEREK-LQGEAIDEDDQNFEA 393 (875)
T ss_pred Cccccccccc-ccccCCCcceeecHHH--HhhccccCCCCceEEeeecccc-CcCcCccchhhh-hhccccCcccccccc
Confidence 9976543111 1111144444432210 0001122221111111111111 111111100000 000000000000000
Q ss_pred CCCccCCCCCCCCCCHHHHHHHHHHc---C--CCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCc
Q 002357 302 SGRMAKGGSGSGGSDIFKIVKMIMER---K--FQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNE 376 (931)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~ll~~l~~~---~--~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~ 376 (931)
....+..........+...+...... + .+++||||.+..+|+.+...|.+....-.
T Consensus 394 ~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~------------------- 454 (875)
T COG4096 394 RDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYN------------------- 454 (875)
T ss_pred cccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcccc-------------------
Confidence 00000000111223344444444433 2 46899999999999999999976321100
Q ss_pred ccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHh--cCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcc
Q 002357 377 EDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQ--EGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRY 454 (931)
Q Consensus 377 ~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~--~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~ 454 (931)
.+=+..+.|.-... +.. +..|. +..-+|.++.+.+..|||+|.+..++.. -. -
T Consensus 455 ---------------~~~a~~IT~d~~~~-q~~-Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~----r~----V 509 (875)
T COG4096 455 ---------------GRYAMKITGDAEQA-QAL-IDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFD----RK----V 509 (875)
T ss_pred ---------------CceEEEEeccchhh-HHH-HHHHHhcCCCCceEEehhhhhcCCCchheeeeeeh----hh----h
Confidence 00133444443332 222 33343 4556899999999999999998866521 11 4
Q ss_pred cCHHHHHHhhhccCCC
Q 002357 455 IGSGEYIQMSGRAGRR 470 (931)
Q Consensus 455 ~s~~~y~Qr~GRaGR~ 470 (931)
.|-..|.||+||+-|.
T Consensus 510 rSktkF~QMvGRGTRl 525 (875)
T COG4096 510 RSKTKFKQMVGRGTRL 525 (875)
T ss_pred hhHHHHHHHhcCcccc
Confidence 5778899999999996
No 122
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=2.2e-17 Score=185.89 Aligned_cols=346 Identities=21% Similarity=0.240 Sum_probs=206.6
Q ss_pred HHHHHHHhcCCcEEEEcCCCCCcHHH---HHHHHHHHH---hCCCEEEEEcCchhhHHHHHHHHHHhcC----CeEEE-e
Q 002357 82 RVSVACLERNESVLVSAHTSAGKTAV---AEYAIAMAF---RDKQRVIYTSPLKALSNQKYRELHQEFK----DVGLM-T 150 (931)
Q Consensus 82 ~~ai~~l~~g~~vlv~apTGsGKTl~---~~l~i~~~l---~~~~rvl~l~P~kaL~~Q~~~~l~~~~~----~vg~~-t 150 (931)
++.+.+|..+.-|+|++.||||||.. |+|-+--+- ..++-+=|+-|.|--+--++++.....+ .|+.. .
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIR 341 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIR 341 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEE
Confidence 45677888889999999999999985 333211111 1255788999999777666665544433 56653 3
Q ss_pred cccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcC----------------CCc
Q 002357 151 GDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP----------------PAI 214 (931)
Q Consensus 151 Gd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~----------------~~~ 214 (931)
=|.+++++..|.+||.+.|..-+.... .+..++.||+||||. |...-.-++.+|. +..
T Consensus 342 fd~ti~e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHE-----RSvnTDILiGmLSRiV~LR~k~~ke~~~~kpL 415 (1172)
T KOG0926|consen 342 FDGTIGEDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHE-----RSVNTDILIGMLSRIVPLRQKYYKEQCQIKPL 415 (1172)
T ss_pred eccccCCCceeEEecchHHHHHHHHhH-hhhhceeEEechhhh-----ccchHHHHHHHHHHHHHHHHHHhhhhcccCce
Confidence 466778899999999999987776543 478999999999993 3333333332221 256
Q ss_pred eEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCC
Q 002357 215 KMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGG 294 (931)
Q Consensus 215 q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 294 (931)
++|.||||+. ..+|.+--..+.. +.-++.-+.|.-|+. +++-......+..+.
T Consensus 416 KLIIMSATLR-VsDFtenk~LFpi-~pPlikVdARQfPVs----------IHF~krT~~DYi~eA--------------- 468 (1172)
T KOG0926|consen 416 KLIIMSATLR-VSDFTENKRLFPI-PPPLIKVDARQFPVS----------IHFNKRTPDDYIAEA--------------- 468 (1172)
T ss_pred eEEEEeeeEE-ecccccCceecCC-CCceeeeecccCceE----------EEeccCCCchHHHHH---------------
Confidence 7999999984 1112111011111 111222233333322 111000000111111
Q ss_pred CcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCC---CCC----------hHHHH
Q 002357 295 RRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLD---FNT----------QEEKD 361 (931)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~---~~~----------~~e~~ 361 (931)
..+.+..-.+.+.+.++||+.....++.++..|++.. +.. .+.+.
T Consensus 469 ----------------------frKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~ 526 (1172)
T KOG0926|consen 469 ----------------------FRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKE 526 (1172)
T ss_pred ----------------------HHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhcccccc
Confidence 1123333334466789999999999999999997641 110 00000
Q ss_pred ------------------------HHHHH-HHH-------HHhhcCcccCC---Ch--hH--HhHHHHh-----hc---c
Q 002357 362 ------------------------TVEQV-FQN-------AVDCLNEEDRN---LP--AI--ELMLPLL-----KR---G 394 (931)
Q Consensus 362 ------------------------~i~~~-~~~-------~~~~l~~~d~~---l~--~~--~~l~~~l-----~~---g 394 (931)
.++.. ++. +...+.+++.. .+ .. ..+-... .. -
T Consensus 527 ~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLy 606 (1172)
T KOG0926|consen 527 NPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLY 606 (1172)
T ss_pred chhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceE
Confidence 00000 000 11111110000 00 00 0000000 11 1
Q ss_pred ceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEec----ceecCCCC------CcccCHHHHHHhh
Q 002357 395 IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA----VKKWDGDS------HRYIGSGEYIQMS 464 (931)
Q Consensus 395 i~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~----~~~~d~~~------~~~~s~~~y~Qr~ 464 (931)
|-.+++-|+...+..|+..-..|.--++|||++++..+.+|++..||.. ...||..+ -.++|.++--||+
T Consensus 607 vLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRA 686 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRA 686 (1172)
T ss_pred EeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhc
Confidence 5567888999999999999899999999999999999999999999863 33465542 2477888899999
Q ss_pred hccCCCCCCCceEEEEEeCCc
Q 002357 465 GRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 465 GRaGR~G~~~~g~~ii~~~~~ 485 (931)
|||||.|. |+|+-+++..
T Consensus 687 GRAGRtgp---GHcYRLYSSA 704 (1172)
T KOG0926|consen 687 GRAGRTGP---GHCYRLYSSA 704 (1172)
T ss_pred cccCCCCC---CceeehhhhH
Confidence 99999997 9999998754
No 123
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.74 E-value=8.6e-17 Score=164.93 Aligned_cols=156 Identities=29% Similarity=0.361 Sum_probs=130.8
Q ss_pred CCCCCHHHHHHHHHHhcC-CcEEEEcCCCCCcHHHHHHHHHHHHhCC--CEEEEEcCchhhHHHHHHHHHHhcCC-----
Q 002357 74 SFELDPFQRVSVACLERN-ESVLVSAHTSAGKTAVAEYAIAMAFRDK--QRVIYTSPLKALSNQKYRELHQEFKD----- 145 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~g-~~vlv~apTGsGKTl~~~l~i~~~l~~~--~rvl~l~P~kaL~~Q~~~~l~~~~~~----- 145 (931)
+++++++|.+++..+... +++++.+|||+|||.++..++...+..+ .+++|++|+++++.|++..+...+..
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKV 85 (201)
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEE
Confidence 456999999999999888 9999999999999999888888887665 89999999999999999999988842
Q ss_pred eEEEecccc------cCCCC-CeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEE
Q 002357 146 VGLMTGDVT------LSPNA-SCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVF 218 (931)
Q Consensus 146 vg~~tGd~~------~~~~~-~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~ 218 (931)
...+.+... ..... +++++|++.+.+.+.........++++|+||+|.+....+...+..++..+++..++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~ 165 (201)
T smart00487 86 VGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLL 165 (201)
T ss_pred EEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEE
Confidence 333444332 23333 99999999999988776666778999999999999876678888888888888999999
Q ss_pred eccCCCChHHH
Q 002357 219 LSATMSNATQF 229 (931)
Q Consensus 219 lSAT~~n~~e~ 229 (931)
+|||+++..+.
T Consensus 166 ~saT~~~~~~~ 176 (201)
T smart00487 166 LSATPPEEIEN 176 (201)
T ss_pred EecCCchhHHH
Confidence 99999866543
No 124
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.73 E-value=2.8e-17 Score=176.42 Aligned_cols=329 Identities=16% Similarity=0.132 Sum_probs=213.3
Q ss_pred CCCCCCChhhhccccCCCCCchhhhccCCCC-CCHHHHHHHHHHh-cC--CcEEEEcCCCCCcHHHHHHHHHHHHhCCCE
Q 002357 46 SGYALTKDEAIHGTFANPVYNGEMAKTYSFE-LDPFQRVSVACLE-RN--ESVLVSAHTSAGKTAVAEYAIAMAFRDKQR 121 (931)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-l~~~Q~~ai~~l~-~g--~~vlv~apTGsGKTl~~~l~i~~~l~~~~r 121 (931)
-+|+.+..=++++--.+|.+.-.+. |-. ++|||..++..+- +| ++.+++.|.|+|||++..-|+... .++
T Consensus 274 idyPlLeEYDFRND~~npdl~idLK---Pst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti---kK~ 347 (776)
T KOG1123|consen 274 IDYPLLEEYDFRNDNVNPDLDIDLK---PSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI---KKS 347 (776)
T ss_pred cCchhhhhhccccCCCCCCCCcCcC---cccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee---ccc
Confidence 3455555444444444443332222 333 8999999998873 33 688999999999999876665543 678
Q ss_pred EEEEcCchhhHHHHHHHHHHhcC----CeEEEeccccc--CCCCCeeEecHHHHHHHHhcCc--------cccCcccEEE
Q 002357 122 VIYTSPLKALSNQKYRELHQEFK----DVGLMTGDVTL--SPNASCLVMTTEILRGMLYRGS--------EVLKEVAWVI 187 (931)
Q Consensus 122 vl~l~P~kaL~~Q~~~~l~~~~~----~vg~~tGd~~~--~~~~~IlV~Tpe~L~~~l~~~~--------~~l~~l~~vV 187 (931)
+|+++..-.-+.||...|..+.. .++.+|.|..- ..++.|+|+|+.++..--.+.. ..-++++++|
T Consensus 348 clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGlll 427 (776)
T KOG1123|consen 348 CLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLL 427 (776)
T ss_pred EEEEecCccCHHHHHHHHHhhcccCccceEEeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEE
Confidence 99999999999999999988865 68888988764 4578999999987653222211 1235789999
Q ss_pred EeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCCChHH--------------HHHHHHhhcCCCeEEEecCCCCCcc
Q 002357 188 FDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQ--------------FAEWICHLHKQPCHVVYTDFRPTPL 253 (931)
Q Consensus 188 iDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n~~e--------------~~~~l~~~~~~~~~v~~~~~rp~pl 253 (931)
+||+|.+....|..++..+-.++. ++||||+-...+ -++|+....+..+.-+..
T Consensus 428 lDEVHvvPA~MFRRVlsiv~aHcK-----LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqC------- 495 (776)
T KOG1123|consen 428 LDEVHVVPAKMFRRVLSIVQAHCK-----LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQC------- 495 (776)
T ss_pred eehhccchHHHHHHHHHHHHHHhh-----ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEee-------
Confidence 999999986666666655544553 899999742221 145555443322211111
Q ss_pred eeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEE
Q 002357 254 QHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVI 333 (931)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~I 333 (931)
..+.+.....| |...+..-..... .-.--++.+...+.-|++.-. ..+.++|
T Consensus 496 -----------aEVWCpMt~eF----y~eYL~~~t~kr~------------lLyvMNP~KFraCqfLI~~HE-~RgDKiI 547 (776)
T KOG1123|consen 496 -----------AEVWCPMTPEF----YREYLRENTRKRM------------LLYVMNPNKFRACQFLIKFHE-RRGDKII 547 (776)
T ss_pred -----------eeeecCCCHHH----HHHHHhhhhhhhh------------eeeecCcchhHHHHHHHHHHH-hcCCeEE
Confidence 01111111111 1111110000000 000000112223344444443 4668999
Q ss_pred EEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHH
Q 002357 334 VFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELL 413 (931)
Q Consensus 334 VF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~ 413 (931)
||..+.-....+|-.|.+ .+++|..++.+|..|++.
T Consensus 548 VFsDnvfALk~YAikl~K--------------------------------------------pfIYG~Tsq~ERm~ILqn 583 (776)
T KOG1123|consen 548 VFSDNVFALKEYAIKLGK--------------------------------------------PFIYGPTSQNERMKILQN 583 (776)
T ss_pred EEeccHHHHHHHHHHcCC--------------------------------------------ceEECCCchhHHHHHHHh
Confidence 999998888888887765 578999999999999999
Q ss_pred Hh-cCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCC
Q 002357 414 FQ-EGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRG 471 (931)
Q Consensus 414 F~-~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G 471 (931)
|+ +..++.+|-..+....||+|..+|+|.-..++. |...-.||.||.-|+.
T Consensus 584 Fq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~G-------SRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 584 FQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGG-------SRRQEAQRLGRILRAK 635 (776)
T ss_pred cccCCccceEEEeeccCccccCCcccEEEEEccccc-------chHHHHHHHHHHHHHh
Confidence 99 568999999999999999999999996544433 3456789999988864
No 125
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.72 E-value=1.5e-15 Score=171.16 Aligned_cols=352 Identities=16% Similarity=0.125 Sum_probs=216.8
Q ss_pred CCCCCHHHHHHHHHH----hcCCcEEEEcCCCCCcHHHH--HHHHHHHHh-CCCEEEEEcCchhhHHHHHHHHHHhcC--
Q 002357 74 SFELDPFQRVSVACL----ERNESVLVSAHTSAGKTAVA--EYAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQEFK-- 144 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~l----~~g~~vlv~apTGsGKTl~~--~l~i~~~l~-~~~rvl~l~P~kaL~~Q~~~~l~~~~~-- 144 (931)
+.++++||.+.+..+ ..|-|.+++...|-|||+.. +++.+.... -.+.-||++|...|.| |.++|+++.+
T Consensus 165 ~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~N-W~~Ef~rf~P~l 243 (971)
T KOG0385|consen 165 GGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDN-WMNEFKRFTPSL 243 (971)
T ss_pred CCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHH-HHHHHHHhCCCc
Confidence 457999999998766 67889999999999999854 333333322 3678899999988877 5799999999
Q ss_pred CeEEEecccc----------cCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCc
Q 002357 145 DVGLMTGDVT----------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAI 214 (931)
Q Consensus 145 ~vg~~tGd~~----------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~ 214 (931)
++-+++||.. .....+|+|+|+|+...-- ....--.+.|+||||+|++.+. ...+..++..+.. .
T Consensus 244 ~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f~~-~ 318 (971)
T KOG0385|consen 244 NVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAHRIKNE--KSKLSKILREFKT-D 318 (971)
T ss_pred ceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhhhhcch--hhHHHHHHHHhcc-c
Confidence 5677888764 2336899999999886431 1111225789999999999876 4556666766653 4
Q ss_pred eEEEeccCC--------------------CChHHHHHHHHhhcCC-CeEEE------ecC-----------CCCCcceee
Q 002357 215 KMVFLSATM--------------------SNATQFAEWICHLHKQ-PCHVV------YTD-----------FRPTPLQHY 256 (931)
Q Consensus 215 q~v~lSAT~--------------------~n~~e~~~~l~~~~~~-~~~v~------~~~-----------~rp~pl~~~ 256 (931)
..+++|.|+ .+..+|.+|+...... .-.++ ... ..-.|....
T Consensus 319 nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~ 398 (971)
T KOG0385|consen 319 NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKEL 398 (971)
T ss_pred ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCccee
Confidence 467778884 2334566666532100 00000 000 000111111
Q ss_pred eeccCCCceeEeeCccchhchhh------------------HHHHHHHHHhhhcCCCcCCCCC-CCCccCC-----CCCC
Q 002357 257 VFPVGGSGLYLVVDEKEQFREDN------------------FVKLQDTFLKQKIGGRRENGKA-SGRMAKG-----GSGS 312 (931)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~-----~~~~ 312 (931)
....+. .....++.... +.-++..+.+- ..+|---.+. .+..... .+..
T Consensus 399 ~iyvgm------s~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKc-cnHPYLF~g~ePg~pyttdehLv~nSG 471 (971)
T KOG0385|consen 399 IIYVGM------SSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKC-CNHPYLFDGAEPGPPYTTDEHLVTNSG 471 (971)
T ss_pred eEeccc------hHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHh-cCCccccCCCCCCCCCCcchHHHhcCc
Confidence 111110 00000110000 00111111100 0000000000 0000000 0112
Q ss_pred CCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhh
Q 002357 313 GGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLK 392 (931)
Q Consensus 313 ~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~ 392 (931)
+...+.+|+..+.. .+.+|+||..-.+.-+-+-.++.-.++.
T Consensus 472 Km~vLDkLL~~Lk~-~GhRVLIFSQmt~mLDILeDyc~~R~y~------------------------------------- 513 (971)
T KOG0385|consen 472 KMLVLDKLLPKLKE-QGHRVLIFSQMTRMLDILEDYCMLRGYE------------------------------------- 513 (971)
T ss_pred ceehHHHHHHHHHh-CCCeEEEeHHHHHHHHHHHHHHHhcCce-------------------------------------
Confidence 23345566666655 5589999998777777666665443333
Q ss_pred ccceeccCCCCHHHHHHHHHHHhcC---CceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCC
Q 002357 393 RGIAVHHSGLLPVIKELVELLFQEG---LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGR 469 (931)
Q Consensus 393 ~gi~~~hg~l~~~~R~~v~~~F~~g---~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR 469 (931)
..-+.|.++.++|...++.|... ..-.|++|.+.+.|||+-+.++||.+++.| +|..=.|..-||.|
T Consensus 514 --ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDW--------NPQ~DLQAmDRaHR 583 (971)
T KOG0385|consen 514 --YCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDW--------NPQVDLQAMDRAHR 583 (971)
T ss_pred --eEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCC--------CchhhhHHHHHHHh
Confidence 45678999999999999999853 345678999999999999999999655544 55567899999999
Q ss_pred CCCCCceEEEEEeCCcc
Q 002357 470 RGKDDRGICIIMVDEQM 486 (931)
Q Consensus 470 ~G~~~~g~~ii~~~~~~ 486 (931)
.|+....+||-++++..
T Consensus 584 IGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 584 IGQKKPVVVYRLITENT 600 (971)
T ss_pred hCCcCceEEEEEeccch
Confidence 99999999999998763
No 126
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=1.2e-16 Score=173.51 Aligned_cols=329 Identities=13% Similarity=0.050 Sum_probs=224.3
Q ss_pred ccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHH--hCCCEEEEEcCchhhHHHHHHHHHHhcC---
Q 002357 71 KTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF--RDKQRVIYTSPLKALSNQKYRELHQEFK--- 144 (931)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l--~~~~rvl~l~P~kaL~~Q~~~~l~~~~~--- 144 (931)
....-+ ...+|.+++..+.+|+++.+.-.|.+||++++.++....+ .+....+|..|+++++....+.+.-...
T Consensus 280 ~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~ 359 (1034)
T KOG4150|consen 280 NKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIK 359 (1034)
T ss_pred hcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehh
Confidence 333334 7899999999999999999999999999999998876654 4567889999999999876554432211
Q ss_pred -----CeEEEecccc------cCCCCCeeEecHHHHHHHHhcCc----cccCcccEEEEeccccCCCCCchHHHHHHHHh
Q 002357 145 -----DVGLMTGDVT------LSPNASCLVMTTEILRGMLYRGS----EVLKEVAWVIFDEIHYMKDRERGVVWEESIIF 209 (931)
Q Consensus 145 -----~vg~~tGd~~------~~~~~~IlV~Tpe~L~~~l~~~~----~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~ 209 (931)
-|....|+.. +..+..++++.|........... ..+-+..+++.||+|..... +|......++.
T Consensus 360 ~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~~~~~~~R~ 438 (1034)
T KOG4150|consen 360 ARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKALAQDQLRA 438 (1034)
T ss_pred hhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhhHHHHHHHH
Confidence 1222334433 23367889999977665432221 22446788999999976543 34444433332
Q ss_pred c---------CCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhH
Q 002357 210 L---------PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNF 280 (931)
Q Consensus 210 l---------~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (931)
| ..+.|++-.|||..+......-+..+ ..+.++..+..|+.-.+++.+.+.. .+.. +-...
T Consensus 439 L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~--~E~~Li~~DGSPs~~K~~V~WNP~~-----~P~~-~~~~~-- 508 (1034)
T KOG4150|consen 439 LSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANL--SELELVTIDGSPSSEKLFVLWNPSA-----PPTS-KSEKS-- 508 (1034)
T ss_pred HHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCC--cceEEEEecCCCCccceEEEeCCCC-----CCcc-hhhhh--
Confidence 2 35789999999998877654433322 3567777788888777776543210 0000 00000
Q ss_pred HHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHH
Q 002357 281 VKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEK 360 (931)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~ 360 (931)
+.......++..+.. ++.++|-||.+|+-|+.+....++.-..+.
T Consensus 509 -------------------------------~~i~E~s~~~~~~i~-~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~--- 553 (1034)
T KOG4150|consen 509 -------------------------------SKVVEVSHLFAEMVQ-HGLRCIAFCPSRKLCELVLCLTREILAETA--- 553 (1034)
T ss_pred -------------------------------hHHHHHHHHHHHHHH-cCCcEEEeccHHHHHHHHHHHHHHHHHHhh---
Confidence 000112233333333 557899999999999988766544211110
Q ss_pred HHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEE
Q 002357 361 DTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440 (931)
Q Consensus 361 ~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vV 440 (931)
+-|-..|..+.||...++|.+++..+-.|++.-+|||++++.|||+...+.|
T Consensus 554 ----------------------------~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAV 605 (1034)
T KOG4150|consen 554 ----------------------------PHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAV 605 (1034)
T ss_pred ----------------------------HHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeE
Confidence 1122235678999999999999999999999999999999999999999999
Q ss_pred EecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEE
Q 002357 441 FTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIM 481 (931)
Q Consensus 441 I~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~ 481 (931)
++... |.|...+.|..|||||++++.-.+.+..
T Consensus 606 l~~GF--------P~S~aNl~QQ~GRAGRRNk~SLavyva~ 638 (1034)
T KOG4150|consen 606 LHLGF--------PGSIANLWQQAGRAGRRNKPSLAVYVAF 638 (1034)
T ss_pred EEccC--------chhHHHHHHHhccccccCCCceEEEEEe
Confidence 96543 8899999999999999999755444443
No 127
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=5.1e-15 Score=175.44 Aligned_cols=119 Identities=20% Similarity=0.134 Sum_probs=95.8
Q ss_pred CCHHHHHHHHHH--cCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhh
Q 002357 315 SDIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLK 392 (931)
Q Consensus 315 ~~~~~ll~~l~~--~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~ 392 (931)
.+...+++.+.. ..+.|+||||+|+..++.++..|...++..
T Consensus 582 eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h------------------------------------ 625 (1025)
T PRK12900 582 EKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAH------------------------------------ 625 (1025)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCc------------------------------------
Confidence 356677777743 367899999999999999999999887764
Q ss_pred ccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCC---CcEE-----EEecceecCCCCCcccCHHHHHHhh
Q 002357 393 RGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMP---AKTV-----VFTAVKKWDGDSHRYIGSGEYIQMS 464 (931)
Q Consensus 393 ~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip---~~~v-----VI~~~~~~d~~~~~~~s~~~y~Qr~ 464 (931)
.++|+ .+.+|+..+..|..+...|+|||++++||+|++ .+.. || .+ .++-+...|.|++
T Consensus 626 ---~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VI----gt----erhes~Rid~Ql~ 692 (1025)
T PRK12900 626 ---NVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFIL----GS----ERHESRRIDRQLR 692 (1025)
T ss_pred ---eeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceee----CC----CCCchHHHHHHHh
Confidence 57786 588999999999999999999999999999999 4432 35 22 2377888999999
Q ss_pred hccCCCCCCCceEEEEEeCC
Q 002357 465 GRAGRRGKDDRGICIIMVDE 484 (931)
Q Consensus 465 GRaGR~G~~~~g~~ii~~~~ 484 (931)
|||||.|..|.+ +.+++.
T Consensus 693 GRtGRqGdpGsS--~ffvSl 710 (1025)
T PRK12900 693 GRAGRQGDPGES--VFYVSL 710 (1025)
T ss_pred hhhhcCCCCcce--EEEech
Confidence 999999997554 444443
No 128
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.65 E-value=2.1e-15 Score=153.18 Aligned_cols=141 Identities=23% Similarity=0.230 Sum_probs=103.8
Q ss_pred CCCCHHHHHHHHHHh-------cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeE
Q 002357 75 FELDPFQRVSVACLE-------RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVG 147 (931)
Q Consensus 75 f~l~~~Q~~ai~~l~-------~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg 147 (931)
|+|+++|.+|+..+. .+.++++.+|||||||.++...+..... +++|++|++.|.+|+..+|..+.....
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~---~~l~~~p~~~l~~Q~~~~~~~~~~~~~ 78 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR---KVLIVAPNISLLEQWYDEFDDFGSEKY 78 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC---EEEEEESSHHHHHHHHHHHHHHSTTSE
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc---ceeEecCHHHHHHHHHHHHHHhhhhhh
Confidence 679999999998875 2689999999999999998866666655 999999999999999999976665322
Q ss_pred EEecc----------------------cccCCCCCeeEecHHHHHHHHhcCc-----------cccCcccEEEEeccccC
Q 002357 148 LMTGD----------------------VTLSPNASCLVMTTEILRGMLYRGS-----------EVLKEVAWVIFDEIHYM 194 (931)
Q Consensus 148 ~~tGd----------------------~~~~~~~~IlV~Tpe~L~~~l~~~~-----------~~l~~l~~vViDEaH~l 194 (931)
...+. .......++++.|...+........ ......++||+||||++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~ 158 (184)
T PF04851_consen 79 NFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHY 158 (184)
T ss_dssp EEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCT
T ss_pred hhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhc
Confidence 21110 0113367899999999987764321 23457789999999998
Q ss_pred CCCCchHH-HHHHHHhcCCCceEEEeccCCC
Q 002357 195 KDRERGVV-WEESIIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 195 ~~~~~g~~-~~~ii~~l~~~~q~v~lSAT~~ 224 (931)
.. .. |..++. .+...+++||||+.
T Consensus 159 ~~----~~~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 159 PS----DSSYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp HH----HHHHHHHHH--SSCCEEEEEESS-S
T ss_pred CC----HHHHHHHHc--CCCCeEEEEEeCcc
Confidence 73 33 666666 56778999999985
No 129
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.64 E-value=1.1e-13 Score=169.53 Aligned_cols=66 Identities=23% Similarity=0.273 Sum_probs=55.3
Q ss_pred CCCCCHHHHHHHH----HHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHH-HHHH
Q 002357 74 SFELDPFQRVSVA----CLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKY-RELH 140 (931)
Q Consensus 74 ~f~l~~~Q~~ai~----~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~-~~l~ 140 (931)
+|++++-|.+... ++.++..+++.|+||+|||++|++|++... .+.+++|.+||++|.+|.. +++.
T Consensus 243 ~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-~~~~vvI~t~T~~Lq~Ql~~~~i~ 313 (820)
T PRK07246 243 GLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-DQRQIIVSVPTKILQDQIMAEEVK 313 (820)
T ss_pred CCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHH
Confidence 6899999999544 346788999999999999999999977643 5789999999999999994 4443
No 130
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.63 E-value=2.6e-14 Score=153.95 Aligned_cols=360 Identities=20% Similarity=0.205 Sum_probs=216.1
Q ss_pred CCHHHHHHHHH-HhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC---CeEEEecc
Q 002357 77 LDPFQRVSVAC-LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK---DVGLMTGD 152 (931)
Q Consensus 77 l~~~Q~~ai~~-l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~---~vg~~tGd 152 (931)
|-|||++.+.. +.+|..++++...|-|||+.| ++|+...+..-..||+||. .|--.|.+.+..+++ .+.++.+.
T Consensus 199 LlPFQreGv~faL~RgGR~llADeMGLGKTiQA-laIA~yyraEwplliVcPA-svrftWa~al~r~lps~~pi~vv~~~ 276 (689)
T KOG1000|consen 199 LLPFQREGVIFALERGGRILLADEMGLGKTIQA-LAIARYYRAEWPLLIVCPA-SVRFTWAKALNRFLPSIHPIFVVDKS 276 (689)
T ss_pred hCchhhhhHHHHHhcCCeEEEecccccchHHHH-HHHHHHHhhcCcEEEEecH-HHhHHHHHHHHHhcccccceEEEecc
Confidence 78999999875 688999999999999999987 6777777788889999998 677788999999998 45566555
Q ss_pred cccC----CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCC--Ch
Q 002357 153 VTLS----PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMS--NA 226 (931)
Q Consensus 153 ~~~~----~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~--n~ 226 (931)
...- ....|.|++++.+..+-.. ..-.++.+||+||.|++.+.. ......+.-.+....++|+||.|+. .+
T Consensus 277 ~D~~~~~~t~~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akhvILLSGTPavSRP 353 (689)
T KOG1000|consen 277 SDPLPDVCTSNTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKHVILLSGTPAVSRP 353 (689)
T ss_pred cCCccccccCCeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhheEEecCCcccCCc
Confidence 4332 2367889999987543221 123358999999999998643 3334455556666778999999973 33
Q ss_pred HHHHHHHHhhc----------------CCCeEEEecCCCCCcce--ee---------------e--eccCCCceeEeeCc
Q 002357 227 TQFAEWICHLH----------------KQPCHVVYTDFRPTPLQ--HY---------------V--FPVGGSGLYLVVDE 271 (931)
Q Consensus 227 ~e~~~~l~~~~----------------~~~~~v~~~~~rp~pl~--~~---------------~--~~~~~~~~~~~~~~ 271 (931)
.++--.|.... +..+.......--+.+. ++ + .|...+.+.++...
T Consensus 354 ~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~~g 433 (689)
T KOG1000|consen 354 SELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVSGG 433 (689)
T ss_pred hhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEcCC
Confidence 33322222111 00111111000000000 00 0 01010111111111
Q ss_pred cchhchhhHHHHHHHHHhhhcCCCcCCCCC-CCCccCCCCCCCCCCHHHHHHHHHH------cCCCcEEEEecCHHHHHH
Q 002357 272 KEQFREDNFVKLQDTFLKQKIGGRRENGKA-SGRMAKGGSGSGGSDIFKIVKMIME------RKFQPVIVFSFSRRECEQ 344 (931)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ll~~l~~------~~~~~~IVF~~sr~~~~~ 344 (931)
...-......... .+.... +...++. ..... -......++..+.+.+.. ....+.+|||....-.+.
T Consensus 434 r~da~~~~lv~~a---~~~t~~-~~~e~~~~~l~l~--y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~ 507 (689)
T KOG1000|consen 434 RIDARMDDLVKAA---ADYTKV-NSMERKHESLLLF--YSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDT 507 (689)
T ss_pred ccchHHHHHHHHh---hhcchh-hhhhhhhHHHHHH--HHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHH
Confidence 1100000111000 000000 0000000 00000 000112234445555544 466789999999999998
Q ss_pred HHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhc-CCceEE-
Q 002357 345 HAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQE-GLVKAL- 422 (931)
Q Consensus 345 la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~-g~i~vL- 422 (931)
+-..+++.+.. ..-+.|..++..|+..-+.|+. ..++|-
T Consensus 508 Iq~~~~~r~vg---------------------------------------~IRIDGst~s~~R~ll~qsFQ~seev~VAv 548 (689)
T KOG1000|consen 508 IQVEVNKRKVG---------------------------------------SIRIDGSTPSHRRTLLCQSFQTSEEVRVAV 548 (689)
T ss_pred HHHHHHHcCCC---------------------------------------eEEecCCCCchhHHHHHHHhccccceEEEE
Confidence 88888765443 2346899999999999999994 456654
Q ss_pred EecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhh
Q 002357 423 FATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDM 494 (931)
Q Consensus 423 vaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l 494 (931)
++-.+.++|+++.+.++|+....+| +|+-++|.--|+.|.|+.....+++++....-.+.+..+
T Consensus 549 lsItA~gvGLt~tAa~~VVFaEL~w--------nPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~ 612 (689)
T KOG1000|consen 549 LSITAAGVGLTLTAASVVVFAELHW--------NPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPM 612 (689)
T ss_pred EEEeecccceeeeccceEEEEEecC--------CCceEEechhhhhhccccceeeEEEEEecCchHHHHHHH
Confidence 4667788999999999888666644 456689999999999998777777777665433333333
No 131
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.62 E-value=1.5e-13 Score=171.39 Aligned_cols=123 Identities=22% Similarity=0.261 Sum_probs=91.8
Q ss_pred CCCCCHHHHHHHHH----HhcCCcEEEEcCCCCCcHHHHHHHHHHH-HhCCCEEEEEcCchhhHHHHHH----HHHHhcC
Q 002357 74 SFELDPFQRVSVAC----LERNESVLVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPLKALSNQKYR----ELHQEFK 144 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~----l~~g~~vlv~apTGsGKTl~~~l~i~~~-l~~~~rvl~l~P~kaL~~Q~~~----~l~~~~~ 144 (931)
+|+++|-|.+.+.. +.++..+++.||||+|||++|++|++.. ...+.+|+|.++|++|-+|... .+++.++
T Consensus 255 ~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~~~~ 334 (928)
T PRK08074 255 KYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEKDIPLLQKIFP 334 (928)
T ss_pred CCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHhhHHHHHHHcC
Confidence 68999999996654 4678889999999999999999987654 4578999999999999999865 2444433
Q ss_pred ---CeEEE----------------------------------------ecccc----------------------cC---
Q 002357 145 ---DVGLM----------------------------------------TGDVT----------------------LS--- 156 (931)
Q Consensus 145 ---~vg~~----------------------------------------tGd~~----------------------~~--- 156 (931)
++.++ |||.. .+
T Consensus 335 ~~~~~~~lKGr~nYlcl~k~~~~l~~~~~~~~~~~~~~~ll~Wl~~T~tGD~dEl~~~~~~~~~w~~i~~~~~~c~~~~c 414 (928)
T PRK08074 335 FPVEAALLKGRSHYLCLRKFEQALQEEDDNYDVALTKAQLLVWLTETETGDLDELNLPSGGKLLWNRIASDGESDGGKQS 414 (928)
T ss_pred CCceEEEEEcccccccHHHHHHHHhccCCCHHHHHHHHHHHHHHccCCCCCHHHccCCCCCcchHHHhhccCcccCCCCC
Confidence 11111 23321 00
Q ss_pred ---------------CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCC
Q 002357 157 ---------------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 157 ---------------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~ 196 (931)
..++|+|+...-|...+..+...+...+++||||||++.+
T Consensus 415 p~~~~Cf~~~ar~~a~~AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 415 PWFSRCFYQRAKNRAKFADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred CcccccHHHHHHHHHhcCCEEEECHHHHHHHHhhhcccCCCCCeEEEECCchHHH
Confidence 0378999999988776644445678899999999998874
No 132
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.62 E-value=1.7e-14 Score=155.11 Aligned_cols=323 Identities=20% Similarity=0.243 Sum_probs=197.3
Q ss_pred CchhhhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHH-HHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhc
Q 002357 65 YNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVA-EYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEF 143 (931)
Q Consensus 65 ~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~-~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~ 143 (931)
+.+.+.++-..+.+..+.+-+..+.+++.+++++.||||||... ...+...+.....|..+.|.|.-+.+++.+.....
T Consensus 36 Y~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEM 115 (699)
T KOG0925|consen 36 YYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEM 115 (699)
T ss_pred HHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHh
Confidence 44445555555667777777888899999999999999999753 23333344455889999999999999988877765
Q ss_pred C-----CeEEEeccccc-CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHH-------HHHHhc
Q 002357 144 K-----DVGLMTGDVTL-SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWE-------ESIIFL 210 (931)
Q Consensus 144 ~-----~vg~~tGd~~~-~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~-------~ii~~l 210 (931)
. .||....-..- .++.-.-+||.+.|..-.... ..+..++++|+||||. |...-+ +++..
T Consensus 116 Dv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~-p~l~~y~viiLDeahE-----RtlATDiLmGllk~v~~~- 188 (699)
T KOG0925|consen 116 DVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSD-PLLGRYGVIILDEAHE-----RTLATDILMGLLKEVVRN- 188 (699)
T ss_pred ccccchhccccccccccCChhHHHHHhcchHHHHHHhhC-cccccccEEEechhhh-----hhHHHHHHHHHHHHHHhh-
Confidence 3 34432211111 111222356777665433322 3478999999999993 222222 22222
Q ss_pred CCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhh
Q 002357 211 PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQ 290 (931)
Q Consensus 211 ~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 290 (931)
.++.++|.+|||. .+..|..+++. ...+-.... -|.+.+..+.. . .+.+..
T Consensus 189 rpdLk~vvmSatl-~a~Kfq~yf~n----~Pll~vpg~--~PvEi~Yt~e~----------e----rDylEa-------- 239 (699)
T KOG0925|consen 189 RPDLKLVVMSATL-DAEKFQRYFGN----APLLAVPGT--HPVEIFYTPEP----------E----RDYLEA-------- 239 (699)
T ss_pred CCCceEEEeeccc-chHHHHHHhCC----CCeeecCCC--CceEEEecCCC----------C----hhHHHH--------
Confidence 3589999999998 44556666552 222222222 23333322211 0 001111
Q ss_pred hcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHH
Q 002357 291 KIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNA 370 (931)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~ 370 (931)
.+..+++.......+-++||..+..+.+..++.+...+
T Consensus 240 -------------------------airtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~----------------- 277 (699)
T KOG0925|consen 240 -------------------------AIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREV----------------- 277 (699)
T ss_pred -------------------------HHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHH-----------------
Confidence 12234444444566789999999999888888775311
Q ss_pred HhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHh---cC--CceEEEecchhhcccCCCCcEEEEec--
Q 002357 371 VDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQ---EG--LVKALFATETFAMGLNMPAKTVVFTA-- 443 (931)
Q Consensus 371 ~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~---~g--~i~vLvaT~~la~GIdip~~~vVI~~-- 443 (931)
+.|... ...-.|..+| |.++..+++.-. +| .-+|+|+|++++..+.++.+.+||..
T Consensus 278 -~~L~~~------------~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf 340 (699)
T KOG0925|consen 278 -DNLGPQ------------VGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGF 340 (699)
T ss_pred -Hhhccc------------cCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCch
Confidence 001000 0001133444 544444443322 12 35899999999999999999999852
Q ss_pred --ceecCCC------CCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 444 --VKKWDGD------SHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 444 --~~~~d~~------~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
..-|++. -.+|+|..+-.||+|||||... |.||.++++.
T Consensus 341 ~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~p---GkcfrLYte~ 387 (699)
T KOG0925|consen 341 SKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP---GKCFRLYTEE 387 (699)
T ss_pred hhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCC---CceEEeecHH
Confidence 2235553 2458899999999999999875 8999999875
No 133
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.61 E-value=3e-13 Score=153.87 Aligned_cols=353 Identities=16% Similarity=0.164 Sum_probs=207.9
Q ss_pred CCHHHHHHHHHH----hcCCcEEEEcCCCCCcHHH--HHHHHHHHH-hCCCEEEEEcCchhhHHHHHHHHHHhcC--CeE
Q 002357 77 LDPFQRVSVACL----ERNESVLVSAHTSAGKTAV--AEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFK--DVG 147 (931)
Q Consensus 77 l~~~Q~~ai~~l----~~g~~vlv~apTGsGKTl~--~~l~i~~~l-~~~~rvl~l~P~kaL~~Q~~~~l~~~~~--~vg 147 (931)
|.+||++.+..+ .++...++....|-|||.. +.++.+..- +-..++||+||. .+..||.++|..+++ .|.
T Consensus 206 Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~~rv~ 284 (923)
T KOG0387|consen 206 LFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPPFRVF 284 (923)
T ss_pred hhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcceEEE
Confidence 799999999877 5667789999999999964 333333322 234789999998 889999999999999 566
Q ss_pred EEecccc--------------------cCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHH
Q 002357 148 LMTGDVT--------------------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESI 207 (931)
Q Consensus 148 ~~tGd~~--------------------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii 207 (931)
+++|..+ ......|+|+|++.++-+ .....-..++++|+||.|++.++. .......
T Consensus 285 ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpn--s~islac 360 (923)
T KOG0387|consen 285 ILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPN--SKISLAC 360 (923)
T ss_pred EEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCc--cHHHHHH
Confidence 6766443 123567999999987532 222223468999999999999873 3344444
Q ss_pred HhcCCCceEEEeccCC--CChHHHHHHHHhhcC-----------CCeEEEe--cCCCCCccee------------eeecc
Q 002357 208 IFLPPAIKMVFLSATM--SNATQFAEWICHLHK-----------QPCHVVY--TDFRPTPLQH------------YVFPV 260 (931)
Q Consensus 208 ~~l~~~~q~v~lSAT~--~n~~e~~~~l~~~~~-----------~~~~v~~--~~~rp~pl~~------------~~~~~ 260 (931)
..++ ..+.|.||.|+ .|-.++-..+..+.. +-.+.+. .....+|++. .+-|.
T Consensus 361 kki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~Py 439 (923)
T KOG0387|consen 361 KKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPY 439 (923)
T ss_pred Hhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 4554 45667778887 344454333322211 1111111 1111111110 00000
Q ss_pred ---------------CCCceeEeeCccchhchhhHHHHH-----HHHHhhhc-------------CCCcCCCCCCCCccC
Q 002357 261 ---------------GGSGLYLVVDEKEQFREDNFVKLQ-----DTFLKQKI-------------GGRRENGKASGRMAK 307 (931)
Q Consensus 261 ---------------~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~-------------~~~~~~~~~~~~~~~ 307 (931)
....+.+.+.-. ...-..|...+ ..+.+... .++.-..+ +....+
T Consensus 440 lLRR~K~dv~~~~Lp~K~E~VlfC~LT-~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~-~~~~~~ 517 (923)
T KOG0387|consen 440 LLRRMKSDVKGLKLPKKEEIVLFCRLT-KLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDR-RDEDEK 517 (923)
T ss_pred HHHHHHHHhhhccCCCccceEEEEecc-HHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccC-cccccc
Confidence 000011111000 00011111111 11111000 00000000 000001
Q ss_pred C-----CCCCCCCC---HHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhcc-CCCCChHHHHHHHHHHHHHHhhcCccc
Q 002357 308 G-----GSGSGGSD---IFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSK-LDFNTQEEKDTVEQVFQNAVDCLNEED 378 (931)
Q Consensus 308 ~-----~~~~~~~~---~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~-~~~~~~~e~~~i~~~~~~~~~~l~~~d 378 (931)
. +......+ +..++..+.+ .+.++++|..++...+.+-..|.. .++.
T Consensus 518 ~~~D~~g~~k~sGKm~vl~~ll~~W~k-qg~rvllFsqs~~mLdilE~fL~~~~~ys----------------------- 573 (923)
T KOG0387|consen 518 QGPDYEGDPKRSGKMKVLAKLLKDWKK-QGDRVLLFSQSRQMLDILESFLRRAKGYS----------------------- 573 (923)
T ss_pred cCCCcCCChhhcchHHHHHHHHHHHhh-CCCEEEEehhHHHHHHHHHHHHHhcCCce-----------------------
Confidence 1 11111222 3344444444 446999999999999988888863 3333
Q ss_pred CCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCce--EEEecchhhcccCCCCcEEEEecceecCCCCCcccC
Q 002357 379 RNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVK--ALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIG 456 (931)
Q Consensus 379 ~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~--vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s 456 (931)
..-+.|..+...|..+.+.|+++... .|++|.+.+.|+|+...+-||. ||+ .++
T Consensus 574 ----------------ylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVII----fDP----dWN 629 (923)
T KOG0387|consen 574 ----------------YLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVII----FDP----DWN 629 (923)
T ss_pred ----------------EEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEE----ECC----CCC
Confidence 35568899999999999999977543 5669999999999999998884 454 455
Q ss_pred HHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 457 SGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 457 ~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
|..=.|..-||-|.|+.....++-+.+..
T Consensus 630 PStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 630 PSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred CccchHHHHHHHhhcCccceEEEEEecCC
Confidence 56678999999999998777777777655
No 134
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=7.5e-13 Score=156.87 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=97.4
Q ss_pred ccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC----Ce
Q 002357 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----DV 146 (931)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~----~v 146 (931)
...|..++++|.-.--.+.+| -+....||.|||+++.+|++.....|..|-+++|+-.||.|-+..+..+|. .|
T Consensus 77 R~lGm~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v 154 (913)
T PRK13103 77 RVMGMRHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSV 154 (913)
T ss_pred HHhCCCcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEE
Confidence 456777888887665555544 588999999999999999998888999999999999999999999998886 67
Q ss_pred EEEecccccC-----CCCCeeEecHHHH-----HHHHh--cCccccCcccEEEEeccccCC
Q 002357 147 GLMTGDVTLS-----PNASCLVMTTEIL-----RGMLY--RGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 147 g~~tGd~~~~-----~~~~IlV~Tpe~L-----~~~l~--~~~~~l~~l~~vViDEaH~l~ 195 (931)
|+++++.+.. -.++|+++|...+ ++.+. ......+.+.++|+||+|.++
T Consensus 155 ~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 155 GIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred EEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 8888876532 1589999999775 43322 112235789999999999775
No 135
>COG4889 Predicted helicase [General function prediction only]
Probab=99.57 E-value=1.5e-14 Score=164.32 Aligned_cols=362 Identities=19% Similarity=0.182 Sum_probs=196.4
Q ss_pred CchhhhccCCCCCCHHHHHHHHHHhcC----CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHH
Q 002357 65 YNGEMAKTYSFELDPFQRVSVACLERN----ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELH 140 (931)
Q Consensus 65 ~~~~~~~~~~f~l~~~Q~~ai~~l~~g----~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~ 140 (931)
.+.++...-+.+|+|+|+.|+++..+| ...=+....|+|||..+ +-|.+++.. .++|+++|..+|..|..+++.
T Consensus 150 ~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTs-LkisEala~-~~iL~LvPSIsLLsQTlrew~ 227 (1518)
T COG4889 150 LQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTS-LKISEALAA-ARILFLVPSISLLSQTLREWT 227 (1518)
T ss_pred cccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchH-HHHHHHHhh-hheEeecchHHHHHHHHHHHh
Confidence 445555566788999999999987443 33344455799999987 445555544 899999999999999999998
Q ss_pred HhcC---CeEEEecccccCC--------------------------------CCCeeEecHHHHHHHHhcCccccCcccE
Q 002357 141 QEFK---DVGLMTGDVTLSP--------------------------------NASCLVMTTEILRGMLYRGSEVLKEVAW 185 (931)
Q Consensus 141 ~~~~---~vg~~tGd~~~~~--------------------------------~~~IlV~Tpe~L~~~l~~~~~~l~~l~~ 185 (931)
..-. ....+++|....+ +--|+++|++.+-..-.....-+..+++
T Consensus 228 ~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDl 307 (1518)
T COG4889 228 AQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDL 307 (1518)
T ss_pred hccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccE
Confidence 7643 2223333332211 2357788888776554444455789999
Q ss_pred EEEeccccCCCCCchHHHHHHHHhcC-----CCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCC--cceeee-
Q 002357 186 VIFDEIHYMKDRERGVVWEESIIFLP-----PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPT--PLQHYV- 257 (931)
Q Consensus 186 vViDEaH~l~~~~~g~~~~~ii~~l~-----~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~--pl~~~~- 257 (931)
||.||||+-........-...+..+. +..+.+.+|||+.=..+-..- ........+.+-+...+ |.-|-+
T Consensus 308 iicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~--kAkd~s~~l~SMDDe~~fGeef~rl~ 385 (1518)
T COG4889 308 IICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKA--KAKDHSAELSSMDDELTFGEEFHRLG 385 (1518)
T ss_pred EEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhh--hhhhccceeeccchhhhhchhhhccc
Confidence 99999997653211111111122221 234578899998422221100 00000111111110000 000000
Q ss_pred ec--------cCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHH---
Q 002357 258 FP--------VGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME--- 326 (931)
Q Consensus 258 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~--- 326 (931)
|. ...+-+.+.+++. .....+........ ++-..+...++...-.-+.+
T Consensus 386 FgeAv~rdlLTDYKVmvlaVd~~------~i~~~~~~~~~~~~--------------~~L~~dd~~kIvG~wnGlakr~g 445 (1518)
T COG4889 386 FGEAVERDLLTDYKVMVLAVDKE------VIAGVLQSVLSGPS--------------KGLALDDVSKIVGCWNGLAKRNG 445 (1518)
T ss_pred HHHHHHhhhhccceEEEEEechh------hhhhhhhhhccCcc--------------cccchhhhhhhhhhhhhhhhhcc
Confidence 00 0000011111111 11111111000000 00000000000000000111
Q ss_pred ------------cCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhcc
Q 002357 327 ------------RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRG 394 (931)
Q Consensus 327 ------------~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 394 (931)
....++|-||.+.+....++..+.. +.+.+...+.+...+ |+-.
T Consensus 446 ~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~--------------Vve~Y~~Elk~d~~n----------L~iS 501 (1518)
T COG4889 446 EDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFET--------------VVEAYDEELKKDFKN----------LKIS 501 (1518)
T ss_pred ccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHH--------------HHHHHHHHHHhcCCC----------ceEE
Confidence 1234678888888888888777643 222333333322221 2223
Q ss_pred ceeccCCCCHHHHHHHHHH---HhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCC
Q 002357 395 IAVHHSGLLPVIKELVELL---FQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRG 471 (931)
Q Consensus 395 i~~~hg~l~~~~R~~v~~~---F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G 471 (931)
+.-..|.|...+|...+.+ |.....+||-....+++|||+|+.+-|| .||+ -.+.-+.+|.+||..|..
T Consensus 502 i~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsVi----Ff~p----r~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 502 IDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVI----FFDP----RSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred eecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEE----EecC----chhHHHHHHHHHHHHHhC
Confidence 4444588999999766654 4578899999999999999999999998 7887 456788999999999964
Q ss_pred C-CCceEEEEEe
Q 002357 472 K-DDRGICIIMV 482 (931)
Q Consensus 472 ~-~~~g~~ii~~ 482 (931)
. ...|.+|+-.
T Consensus 574 ~gK~yGYIILPI 585 (1518)
T COG4889 574 KGKKYGYIILPI 585 (1518)
T ss_pred cCCccceEEEEe
Confidence 3 3468777643
No 136
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=1e-12 Score=152.10 Aligned_cols=126 Identities=18% Similarity=0.126 Sum_probs=101.8
Q ss_pred hhhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC---
Q 002357 68 EMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK--- 144 (931)
Q Consensus 68 ~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~--- 144 (931)
.....++..|++.|.-+.-.+..|+ +....||.|||+++.+|++.....|..|-+++|+--||.|-++.+..+|.
T Consensus 70 a~~R~lg~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LG 147 (764)
T PRK12326 70 AAERTLGLRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALG 147 (764)
T ss_pred HHHHHcCCCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence 3345678889999999998888775 77999999999999999998888999999999999999999999988876
Q ss_pred -CeEEEecccccC-----CCCCeeEecHHH-----HHHHHhc--CccccCcccEEEEeccccCC
Q 002357 145 -DVGLMTGDVTLS-----PNASCLVMTTEI-----LRGMLYR--GSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 145 -~vg~~tGd~~~~-----~~~~IlV~Tpe~-----L~~~l~~--~~~~l~~l~~vViDEaH~l~ 195 (931)
.||+++++.+.. -.++|+++|..- |++.+.. .....+.+.+.|+||||.++
T Consensus 148 Lsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 148 LTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred CEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 788888876533 268999999854 4444321 22345678999999999775
No 137
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.57 E-value=3.5e-14 Score=136.76 Aligned_cols=132 Identities=29% Similarity=0.359 Sum_probs=104.1
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHh--CCCEEEEEcCchhhHHHHHHHHHHhc---CCeEEEeccccc-------CCCC
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFR--DKQRVIYTSPLKALSNQKYRELHQEF---KDVGLMTGDVTL-------SPNA 159 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~--~~~rvl~l~P~kaL~~Q~~~~l~~~~---~~vg~~tGd~~~-------~~~~ 159 (931)
+++++.+|||+|||.++...+..... ...+++|++|+++|++|+.+.+.... ..+..+.+.... ....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLLSGKT 80 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHhcCCC
Confidence 46899999999999998888777764 56899999999999999999998887 356666665432 3578
Q ss_pred CeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCC
Q 002357 160 SCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATM 223 (931)
Q Consensus 160 ~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~ 223 (931)
+|+++|++.+...+.........++++|+||+|.+....................+++++|||+
T Consensus 81 ~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 81 DIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 9999999998877665555566899999999999987654443322344556788999999996
No 138
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.52 E-value=7.8e-13 Score=156.65 Aligned_cols=357 Identities=17% Similarity=0.154 Sum_probs=218.1
Q ss_pred CCCCCHHHHHHHHHH----hcCCcEEEEcCCCCCcHHH---HHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC-C
Q 002357 74 SFELDPFQRVSVACL----ERNESVLVSAHTSAGKTAV---AEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-D 145 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~l----~~g~~vlv~apTGsGKTl~---~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~ 145 (931)
+-+|++||.+.+..+ ..+.|+|++...|-|||+. |+.-+.....-.+..|+++|...+.+ |.++|..+.. +
T Consensus 368 g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~-W~~ef~~w~~mn 446 (1373)
T KOG0384|consen 368 GNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITA-WEREFETWTDMN 446 (1373)
T ss_pred cchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHH-HHHHHHHHhhhc
Confidence 457999999998765 6789999999999999974 44455555556678899999976655 6788888875 6
Q ss_pred eEEEecccc-----------cCC-----CCCeeEecHHHHHHHHhcCccccC--cccEEEEeccccCCCCCchHHHHHHH
Q 002357 146 VGLMTGDVT-----------LSP-----NASCLVMTTEILRGMLYRGSEVLK--EVAWVIFDEIHYMKDRERGVVWEESI 207 (931)
Q Consensus 146 vg~~tGd~~-----------~~~-----~~~IlV~Tpe~L~~~l~~~~~~l~--~l~~vViDEaH~l~~~~~g~~~~~ii 207 (931)
+-+++|+.. ... ..+++++|+|.+..- ...|. .+.++++||||++.+. ...+...+
T Consensus 447 ~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD----k~~L~~i~w~~~~vDeahrLkN~--~~~l~~~l 520 (1373)
T KOG0384|consen 447 VIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD----KAELSKIPWRYLLVDEAHRLKND--ESKLYESL 520 (1373)
T ss_pred eeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc----HhhhccCCcceeeecHHhhcCch--HHHHHHHH
Confidence 666777653 112 478999999987532 22233 4678999999999865 33444445
Q ss_pred HhcCCCceEEEeccCC--CChHHHHHHHHhhcCCCeEEEe---cCC---------------CCCcceee------eeccC
Q 002357 208 IFLPPAIKMVFLSATM--SNATQFAEWICHLHKQPCHVVY---TDF---------------RPTPLQHY------VFPVG 261 (931)
Q Consensus 208 ~~l~~~~q~v~lSAT~--~n~~e~~~~l~~~~~~~~~v~~---~~~---------------rp~pl~~~------~~~~~ 261 (931)
..+.- -..+++|.|+ .|..++...+..+......... .++ +|--+... ..+..
T Consensus 521 ~~f~~-~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k 599 (1373)
T KOG0384|consen 521 NQFKM-NHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPK 599 (1373)
T ss_pred HHhcc-cceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCC
Confidence 55443 3457778887 3445666556433322111000 000 00000000 00000
Q ss_pred CCceeEe-e-CccchhchhhHHHHHHHHHhhhcCCCcC-------CCCCC--CCccCC--------CC------------
Q 002357 262 GSGLYLV-V-DEKEQFREDNFVKLQDTFLKQKIGGRRE-------NGKAS--GRMAKG--------GS------------ 310 (931)
Q Consensus 262 ~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~--~~~~~~--------~~------------ 310 (931)
..++-.+ . +-..+|....+.+-+..+.+.......+ .++-+ ....++ ..
T Consensus 600 ~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI 679 (1373)
T KOG0384|consen 600 EETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALI 679 (1373)
T ss_pred cceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHH
Confidence 0111110 0 0001111111222222222211111000 00000 000000 00
Q ss_pred --CCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHH
Q 002357 311 --GSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELML 388 (931)
Q Consensus 311 --~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~ 388 (931)
..+.--+.+|+-.|. .++.+||||..-++.-+-++++|...+++-
T Consensus 680 ~sSGKlVLLDKLL~rLk-~~GHrVLIFSQMVRmLDIL~eYL~~r~ypf-------------------------------- 726 (1373)
T KOG0384|consen 680 QSSGKLVLLDKLLPRLK-EGGHRVLIFSQMVRMLDILAEYLSLRGYPF-------------------------------- 726 (1373)
T ss_pred HhcCcEEeHHHHHHHHh-cCCceEEEhHHHHHHHHHHHHHHHHcCCcc--------------------------------
Confidence 011122334444443 356899999999999999999998888763
Q ss_pred HHhhccceeccCCCCHHHHHHHHHHHhc---CCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhh
Q 002357 389 PLLKRGIAVHHSGLLPVIKELVELLFQE---GLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSG 465 (931)
Q Consensus 389 ~~l~~gi~~~hg~l~~~~R~~v~~~F~~---g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~G 465 (931)
--+.|++..+.|+..+..|.. ...-.|.||.+.+.|||+-+.+.||..++ .++|..=+|.-.
T Consensus 727 -------QRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDS--------DWNPQNDLQAqA 791 (1373)
T KOG0384|consen 727 -------QRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDS--------DWNPQNDLQAQA 791 (1373)
T ss_pred -------eeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCC--------CCCcchHHHHHH
Confidence 346899999999999999983 45678889999999999999998885555 445566889999
Q ss_pred ccCCCCCCCceEEEEEeCCcc
Q 002357 466 RAGRRGKDDRGICIIMVDEQM 486 (931)
Q Consensus 466 RaGR~G~~~~g~~ii~~~~~~ 486 (931)
||.|.|+.....++-+++...
T Consensus 792 RaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 792 RAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred HHHhhcccceEEEEEEecCCc
Confidence 999999999999999998764
No 139
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.51 E-value=1.3e-15 Score=177.30 Aligned_cols=277 Identities=26% Similarity=0.379 Sum_probs=189.9
Q ss_pred CCHHHHHHHHHH-hcCCcEEEEcCCCCCcHHHHHHHHHHHHh--CCCEEEEEcCchhhHHHHHHHHHHhcC----CeEEE
Q 002357 77 LDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMAFR--DKQRVIYTSPLKALSNQKYRELHQEFK----DVGLM 149 (931)
Q Consensus 77 l~~~Q~~ai~~l-~~g~~vlv~apTGsGKTl~~~l~i~~~l~--~~~rvl~l~P~kaL~~Q~~~~l~~~~~----~vg~~ 149 (931)
+.|.|.+.+.++ .-..++++-+|||+|||++|++++...+. .+.+++|++|-++|+..-..++...+. .++-.
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~ 1007 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIEL 1007 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEec
Confidence 566777777665 44568999999999999999999999885 468999999999999999988888765 36667
Q ss_pred ecccccC----CCCCeeEecHHHHHHHHh--cCccccCcccEEEEeccccCCCCCchHHHHHHHHh-------cCCCceE
Q 002357 150 TGDVTLS----PNASCLVMTTEILRGMLY--RGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF-------LPPAIKM 216 (931)
Q Consensus 150 tGd~~~~----~~~~IlV~Tpe~L~~~l~--~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~-------l~~~~q~ 216 (931)
+|++... .+++|+|+||+++..... .....+++++.+|+||.|.+.+ +||++++.+... .++.+|.
T Consensus 1008 tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~~s~~t~~~vr~ 1086 (1230)
T KOG0952|consen 1008 TGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNYISSQTEEPVRY 1086 (1230)
T ss_pred cCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEeeccccCccccCcchhh
Confidence 8887765 368999999999876654 4567789999999999998875 689988765443 3457899
Q ss_pred EEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCc
Q 002357 217 VFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRR 296 (931)
Q Consensus 217 v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 296 (931)
+++|--+.|+.++++|++.... +-+.+..||+|++.++-..++ ..+. ..+..+++
T Consensus 1087 ~glsta~~na~dla~wl~~~~~---~nf~~svrpvp~~~~i~gfp~-~~~c--------------prm~smnk------- 1141 (1230)
T KOG0952|consen 1087 LGLSTALANANDLADWLNIKDM---YNFRPSVRPVPLEVHIDGFPG-QHYC--------------PRMMSMNK------- 1141 (1230)
T ss_pred hhHhhhhhccHHHHHHhCCCCc---CCCCcccccCCceEeecCCCc-hhcc--------------hhhhhccc-------
Confidence 9999999999999999986433 445667899999877643332 1111 11111110
Q ss_pred CCCCCCCCccCCCCCCCCCCHHHHHHHHH-HcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHH--H-HHHHHHHHh
Q 002357 297 ENGKASGRMAKGGSGSGGSDIFKIVKMIM-ERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDT--V-EQVFQNAVD 372 (931)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~-~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~--i-~~~~~~~~~ 372 (931)
.....++ ..+..|++||+.+++....-|..|............. . ...++..+.
T Consensus 1142 ----------------------pa~qaik~~sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~de~e~e~~~~ 1199 (1230)
T KOG0952|consen 1142 ----------------------PAFQAIKTHSPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMDELELEIIMS 1199 (1230)
T ss_pred ----------------------HHHHHHhcCCCCCceEEEeecccccccchHhHHhhccCCCCchhccCCCHHHHHHHHH
Confidence 0111122 2356799999999887766665553211110000000 0 011222222
Q ss_pred hcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHH
Q 002357 373 CLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKEL 409 (931)
Q Consensus 373 ~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~ 409 (931)
..++ ..|.-.+..||+.||+|+...+|..
T Consensus 1200 ~~~d--------~~Lk~tl~Fgi~lhhagl~~~dr~~ 1228 (1230)
T KOG0952|consen 1200 KVRD--------TNLKLTLPFGIGLHHAGLIENDRKI 1228 (1230)
T ss_pred Hhcc--------cchhhhhhhhhhhhhhhcccccccc
Confidence 2222 2345567789999999998877654
No 140
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.51 E-value=4.2e-14 Score=121.95 Aligned_cols=72 Identities=29% Similarity=0.465 Sum_probs=67.6
Q ss_pred hccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCC
Q 002357 392 KRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRG 471 (931)
Q Consensus 392 ~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G 471 (931)
...+..+||++++.+|+.+++.|++|..+|||||+++++|||+|.+++|| .|+. |.++.+|.|++||+||.|
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi----~~~~----~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVI----FYDP----PWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEE----ESSS----ESSHHHHHHHHTTSSTTT
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccccccccccccccc----cccc----CCCHHHHHHHhhcCCCCC
Confidence 34589999999999999999999999999999999999999999999999 6777 899999999999999987
No 141
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.50 E-value=1.2e-13 Score=131.80 Aligned_cols=104 Identities=31% Similarity=0.432 Sum_probs=91.5
Q ss_pred CCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHH
Q 002357 328 KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK 407 (931)
Q Consensus 328 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R 407 (931)
...++||||+++..++.++..|.+.+. ++.++||++++.+|
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~---------------------------------------~~~~~~~~~~~~~~ 67 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGI---------------------------------------KVAALHGDGSQEER 67 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCC---------------------------------------cEEEEECCCCHHHH
Confidence 467999999999999999999975322 37899999999999
Q ss_pred HHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEE
Q 002357 408 ELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICII 480 (931)
Q Consensus 408 ~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii 480 (931)
..+...|++|..++|++|.++++|+|+|.+++|| .++. +.+..+|.|++||+||.|. .|.+++
T Consensus 68 ~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi----~~~~----~~~~~~~~Q~~GR~~R~~~--~~~~~~ 130 (131)
T cd00079 68 EEVLKDFREGEIVVLVATDVIARGIDLPNVSVVI----NYDL----PWSPSSYLQRIGRAGRAGQ--KGTAIL 130 (131)
T ss_pred HHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEE----EeCC----CCCHHHheecccccccCCC--CceEEe
Confidence 9999999999999999999999999999999888 4455 7888999999999999997 466654
No 142
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.48 E-value=1.6e-11 Score=143.83 Aligned_cols=58 Identities=24% Similarity=0.284 Sum_probs=50.1
Q ss_pred HHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh--CCCEEEEEcCchhhHHHHHHHHHHhc
Q 002357 86 ACLERNESVLVSAHTSAGKTAVAEYAIAMAFR--DKQRVIYTSPLKALSNQKYRELHQEF 143 (931)
Q Consensus 86 ~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~--~~~rvl~l~P~kaL~~Q~~~~l~~~~ 143 (931)
.++.+++.+++.||||+|||++|++|++.... .+.++||++||++|..|.++++..+.
T Consensus 11 ~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 11 TSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 45577889999999999999999999877654 47999999999999999998776554
No 143
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.46 E-value=4.9e-12 Score=143.88 Aligned_cols=160 Identities=19% Similarity=0.235 Sum_probs=111.2
Q ss_pred CCCCCCHHHHHHHHHH----hcCCcEEEEcCCCCCcHH--HHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC--
Q 002357 73 YSFELDPFQRVSVACL----ERNESVLVSAHTSAGKTA--VAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-- 144 (931)
Q Consensus 73 ~~f~l~~~Q~~ai~~l----~~g~~vlv~apTGsGKTl--~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-- 144 (931)
-+++|-+||.-.+..+ .++-+.|++...|-|||. ++.++.+......+.=||+||...|-| |.++|.++++
T Consensus 396 s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleN-WlrEf~kwCPsl 474 (941)
T KOG0389|consen 396 SGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLEN-WLREFAKWCPSL 474 (941)
T ss_pred CCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHHH-HHHHHHHhCCce
Confidence 3677999999998876 566788999999999996 455666666666677899999987766 6899999999
Q ss_pred CeEEEeccccc-----------CCCCCeeEecHHHHHHHHh-cCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCC
Q 002357 145 DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLY-RGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPP 212 (931)
Q Consensus 145 ~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~-~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~ 212 (931)
.|-.++|.... ....+|+|+|+....+--. +....-.+++++|+||.|++.+.. ...|. -+..++
T Consensus 475 ~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~-~LM~I~- 551 (941)
T KOG0389|consen 475 KVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYK-HLMSIN- 551 (941)
T ss_pred EEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHH-Hhcccc-
Confidence 45556776531 2368999999975542111 111113468999999999998753 22232 233344
Q ss_pred CceEEEeccCC--CChHHHHHHHHhh
Q 002357 213 AIKMVFLSATM--SNATQFAEWICHL 236 (931)
Q Consensus 213 ~~q~v~lSAT~--~n~~e~~~~l~~~ 236 (931)
.-+.++||+|+ .|-.|+...+..+
T Consensus 552 An~RlLLTGTPLQNNL~ELiSLL~Fv 577 (941)
T KOG0389|consen 552 ANFRLLLTGTPLQNNLKELISLLAFV 577 (941)
T ss_pred ccceEEeeCCcccccHHHHHHHHHHH
Confidence 44567888887 4566766666543
No 144
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.45 E-value=3.8e-11 Score=140.77 Aligned_cols=365 Identities=13% Similarity=0.112 Sum_probs=202.6
Q ss_pred CCCHHHHHHHHHH---hc-------CCcEEEEcCCCCCcHHHHHHHHHHHH--hCC-----CEEEEEcCchhhHHHHHHH
Q 002357 76 ELDPFQRVSVACL---ER-------NESVLVSAHTSAGKTAVAEYAIAMAF--RDK-----QRVIYTSPLKALSNQKYRE 138 (931)
Q Consensus 76 ~l~~~Q~~ai~~l---~~-------g~~vlv~apTGsGKTl~~~l~i~~~l--~~~-----~rvl~l~P~kaL~~Q~~~~ 138 (931)
.++|+|++.+..+ .. ....+++-..|+|||+....-+...+ .++ .+.||++|. .|++.|+++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 4899999999876 11 23457777889999986544444334 345 689999997 899999999
Q ss_pred HHHhcC--CeEE--Eeccccc--------------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCch
Q 002357 139 LHQEFK--DVGL--MTGDVTL--------------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERG 200 (931)
Q Consensus 139 l~~~~~--~vg~--~tGd~~~--------------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g 200 (931)
|.++.+ ++.. +.|...- +-...|++.++|.++..... .....++++|+||.|++.+. .
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~--~ 392 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS--D 392 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch--h
Confidence 999987 3332 3333331 11356788899988744432 33568999999999999875 2
Q ss_pred HHHHHHHHhcCCCceEEEeccCC--CChHHHHHHHHhhcCCCeEEE----------ecCCCCCc--------------c-
Q 002357 201 VVWEESIIFLPPAIKMVFLSATM--SNATQFAEWICHLHKQPCHVV----------YTDFRPTP--------------L- 253 (931)
Q Consensus 201 ~~~~~ii~~l~~~~q~v~lSAT~--~n~~e~~~~l~~~~~~~~~v~----------~~~~rp~p--------------l- 253 (931)
......+..+. ..+.|+||.|+ .|-.|+.+.+......-..-. ....+..+ |
T Consensus 393 s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~ 471 (776)
T KOG0390|consen 393 SLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELR 471 (776)
T ss_pred hHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHH
Confidence 22333444443 45678999998 344565555543221100000 00000000 0
Q ss_pred ---eeeeecc---------CCCceeEeeCccchhchhhHHHHHHHH--H-------------hhhcCCCcC------CCC
Q 002357 254 ---QHYVFPV---------GGSGLYLVVDEKEQFREDNFVKLQDTF--L-------------KQKIGGRRE------NGK 300 (931)
Q Consensus 254 ---~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l--~-------------~~~~~~~~~------~~~ 300 (931)
.+++... ++...+.++-.....+...+.+..+.. . +....++.- ..+
T Consensus 472 ~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~ 551 (776)
T KOG0390|consen 472 ELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTEK 551 (776)
T ss_pred HHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccccc
Confidence 0111110 112222232222233333333333320 0 000000000 000
Q ss_pred ---C---------CCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEE---ecCHHHHHHHHHHhccCCCCChHHHHHHHH
Q 002357 301 ---A---------SGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVF---SFSRRECEQHAMSMSKLDFNTQEEKDTVEQ 365 (931)
Q Consensus 301 ---~---------~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF---~~sr~~~~~la~~L~~~~~~~~~e~~~i~~ 365 (931)
. ...............+..++..+.. ...++.+| +..-.....+.+.+.+.
T Consensus 552 e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~-~~ek~~~~~v~Isny~~tldl~e~~~~~------------- 617 (776)
T KOG0390|consen 552 EKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEV-IREKLLVKSVLISNYTQTLDLFEQLCRW------------- 617 (776)
T ss_pred cccccChHhhhcccccccccccchhhhHHHHHHHHHHH-HhhhcceEEEEeccHHHHHHHHHHHHhh-------------
Confidence 0 0000000111123344445554422 12233333 33334444444444321
Q ss_pred HHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcC--CceEE-EecchhhcccCCCCcEEEEe
Q 002357 366 VFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEG--LVKAL-FATETFAMGLNMPAKTVVFT 442 (931)
Q Consensus 366 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g--~i~vL-vaT~~la~GIdip~~~vVI~ 442 (931)
....+..+||.|+..+|+.+.+.|++- ..+|+ .+|-+.+.|||+-+.+-||+
T Consensus 618 -------------------------~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil 672 (776)
T KOG0390|consen 618 -------------------------RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL 672 (776)
T ss_pred -------------------------cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE
Confidence 122367899999999999999999953 33454 46778899999999998885
Q ss_pred cceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc-cCHHHHHh
Q 002357 443 AVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ-MEMNTLKD 493 (931)
Q Consensus 443 ~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~-~~~~~l~~ 493 (931)
.++ .++|+.=.|.++||-|.|+....+++-+.... .+.+..++
T Consensus 673 ~D~--------dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qr 716 (776)
T KOG0390|consen 673 FDP--------DWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQR 716 (776)
T ss_pred eCC--------CCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHH
Confidence 544 55667788999999999998777777777554 34444443
No 145
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.43 E-value=1.1e-11 Score=146.55 Aligned_cols=351 Identities=16% Similarity=0.185 Sum_probs=200.4
Q ss_pred CCCHHHHHHHHHH---hc-CCcEEEEcCCCCCcHHHHHHHHHHHH--h-------CCCEEEEEcCchhhHHHHHHHHHHh
Q 002357 76 ELDPFQRVSVACL---ER-NESVLVSAHTSAGKTAVAEYAIAMAF--R-------DKQRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 76 ~l~~~Q~~ai~~l---~~-g~~vlv~apTGsGKTl~~~l~i~~~l--~-------~~~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
+|+.||++.+..+ .+ +-+.+++...|-|||+...-.++.-. + +....||+||. .|+--|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 3899999998776 22 34789999999999997654443322 2 12348999998 8999999999999
Q ss_pred cCC--eEEEecccc----c---CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCC
Q 002357 143 FKD--VGLMTGDVT----L---SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPA 213 (931)
Q Consensus 143 ~~~--vg~~tGd~~----~---~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~ 213 (931)
|+- |-...|.-. . -.+++|+|++++.+++-+..-. -.++.|.|+||-|-|.+. ..........+...
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~--~~~wNYcVLDEGHVikN~--ktkl~kavkqL~a~ 1129 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLI--KIDWNYCVLDEGHVIKNS--KTKLTKAVKQLRAN 1129 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHH--hcccceEEecCcceecch--HHHHHHHHHHHhhc
Confidence 994 433444332 2 2357999999999997543211 226789999999999875 33444455566555
Q ss_pred ceEEEeccCC-C-ChHHH---HHHHHhhc-----------CCCeEEEecCCCCC-----------cceeee---------
Q 002357 214 IKMVFLSATM-S-NATQF---AEWICHLH-----------KQPCHVVYTDFRPT-----------PLQHYV--------- 257 (931)
Q Consensus 214 ~q~v~lSAT~-~-n~~e~---~~~l~~~~-----------~~~~~v~~~~~rp~-----------pl~~~~--------- 257 (931)
.+ +.||.|+ . |..++ .+|+.--. .+|+.--....... .+..-+
T Consensus 1130 hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlK 1208 (1549)
T KOG0392|consen 1130 HR-LILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLK 1208 (1549)
T ss_pred ce-EEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 54 5567776 3 44443 34432100 01110000000000 000000
Q ss_pred -------eccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCc----CCCCCCCC--------------------cc
Q 002357 258 -------FPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRR----ENGKASGR--------------------MA 306 (931)
Q Consensus 258 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~--------------------~~ 306 (931)
-|.-.+++|.-..+. ..++++.+.+....... .+....+. ..
T Consensus 1209 edVL~DLPpKIIQDyyCeLs~l-------Q~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLv 1281 (1549)
T KOG0392|consen 1209 EDVLKDLPPKIIQDYYCELSPL-------QKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALV 1281 (1549)
T ss_pred HHHHhhCChhhhhheeeccCHH-------HHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCccee
Confidence 000011111111111 11112222111000000 00000000 00
Q ss_pred CC------------------C--CCCCCCCHHHHHHHHHHc----------------CCCcEEEEecCHHHHHHHHHHhc
Q 002357 307 KG------------------G--SGSGGSDIFKIVKMIMER----------------KFQPVIVFSFSRRECEQHAMSMS 350 (931)
Q Consensus 307 ~~------------------~--~~~~~~~~~~ll~~l~~~----------------~~~~~IVF~~sr~~~~~la~~L~ 350 (931)
.+ + .....+++.++-..+.+- .+.+++|||.-+...+.+-..|-
T Consensus 1282 lt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~ 1361 (1549)
T KOG0392|consen 1282 LTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLF 1361 (1549)
T ss_pred eCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHh
Confidence 00 0 001122333332222220 23467777777777777766664
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccce--eccCCCCHHHHHHHHHHHhcC-CceEEE-ecc
Q 002357 351 KLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIA--VHHSGLLPVIKELVELLFQEG-LVKALF-ATE 426 (931)
Q Consensus 351 ~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~--~~hg~l~~~~R~~v~~~F~~g-~i~vLv-aT~ 426 (931)
+.... .|. .+.|..+|..|.++.+.|+++ .|+||+ +|-
T Consensus 1362 k~~mp--------------------------------------sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTTh 1403 (1549)
T KOG0392|consen 1362 KKYMP--------------------------------------SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTH 1403 (1549)
T ss_pred hhhcC--------------------------------------ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeee
Confidence 42222 133 568999999999999999998 899886 788
Q ss_pred hhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 427 TFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 427 ~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
+.+.|+|+...+.||.....|++ ..=.|..-||.|-|+.....++-+.+..
T Consensus 1404 VGGLGLNLTGADTVVFvEHDWNP--------MrDLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1404 VGGLGLNLTGADTVVFVEHDWNP--------MRDLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred ccccccccCCCceEEEEecCCCc--------hhhHHHHHHHHhhcCceeeeeeeehhcc
Confidence 99999999999988865555555 3358999999999998888888877765
No 146
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.40 E-value=9.4e-12 Score=147.80 Aligned_cols=123 Identities=11% Similarity=0.000 Sum_probs=95.5
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC--CeEEEeccccc-----------CCCCCe
Q 002357 95 LVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK--DVGLMTGDVTL-----------SPNASC 161 (931)
Q Consensus 95 lv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~--~vg~~tGd~~~-----------~~~~~I 161 (931)
+..+.+|||||.+|+-++...+..|+.+|+++|..+|..|..+.|++.|+ .+.+++++.+. +.++.|
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~I 243 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARV 243 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcE
Confidence 44445699999999999999999999999999999999999999999997 68889987752 446899
Q ss_pred eEecHHHHHHHHhcCccccCcccEEEEeccccCCCCC---chHHHHHHHH--hcCCCceEEEeccCCC
Q 002357 162 LVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRE---RGVVWEESII--FLPPAIKMVFLSATMS 224 (931)
Q Consensus 162 lV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~---~g~~~~~ii~--~l~~~~q~v~lSAT~~ 224 (931)
+|+|-..+. ..+.++++||+||-|.-+-.+ ...+..++.. .-..+..+|+-|||++
T Consensus 244 ViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 244 VVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred EEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 999975442 457899999999999554221 1222233322 2235788999999987
No 147
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.39 E-value=1e-10 Score=141.62 Aligned_cols=63 Identities=24% Similarity=0.187 Sum_probs=53.5
Q ss_pred CCCCCHHHHHHHHHH----hc-----CCcEEEEcCCCCCcHHHHHHHHHH-HHhCCCEEEEEcCchhhHHHHH
Q 002357 74 SFELDPFQRVSVACL----ER-----NESVLVSAHTSAGKTAVAEYAIAM-AFRDKQRVIYTSPLKALSNQKY 136 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~l----~~-----g~~vlv~apTGsGKTl~~~l~i~~-~l~~~~rvl~l~P~kaL~~Q~~ 136 (931)
+|+.++-|.+....+ .. ++.++|-||||+|||++|++|.+. +...+++|||-+.|++|-+|..
T Consensus 23 ~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 23 GFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLV 95 (697)
T ss_pred CCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 689999999976554 33 367899999999999999998765 4568999999999999999985
No 148
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.39 E-value=2.7e-10 Score=134.02 Aligned_cols=125 Identities=14% Similarity=0.168 Sum_probs=91.4
Q ss_pred hhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHh---cC-
Q 002357 69 MAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE---FK- 144 (931)
Q Consensus 69 ~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~---~~- 144 (931)
....+|..|++.|.-.--.+..|+ +....||-|||+++.+|++.....|..|-+++..--||.-=+..+..+ +|
T Consensus 71 ~~R~lG~r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy~fLGL 148 (925)
T PRK12903 71 TKRVLGKRPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGL 148 (925)
T ss_pred HHHHhCCCcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHHHHhCC
Confidence 344568889999988877776664 799999999999999998876677888888888889998655555544 44
Q ss_pred CeEEEecccccC-----CCCCeeEecHHH-----HHHHHh--cCccccCcccEEEEeccccCC
Q 002357 145 DVGLMTGDVTLS-----PNASCLVMTTEI-----LRGMLY--RGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 145 ~vg~~tGd~~~~-----~~~~IlV~Tpe~-----L~~~l~--~~~~~l~~l~~vViDEaH~l~ 195 (931)
.||+...+.+.. -.++|+++|..- |++.+. ......+.+.+.|+||||.++
T Consensus 149 svG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 149 SVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred ceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 778777655432 258999999854 433221 112335788999999999765
No 149
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.37 E-value=7.6e-11 Score=143.84 Aligned_cols=69 Identities=28% Similarity=0.273 Sum_probs=58.1
Q ss_pred CCCCCCHHHHHHHHHH----hcCCcEEEEcCCCCCcHHHHHHHHHHHH-hCCCEEEEEcCchhhHHHHHHHHHH
Q 002357 73 YSFELDPFQRVSVACL----ERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQ 141 (931)
Q Consensus 73 ~~f~l~~~Q~~ai~~l----~~g~~vlv~apTGsGKTl~~~l~i~~~l-~~~~rvl~l~P~kaL~~Q~~~~l~~ 141 (931)
-+|++++.|.+.+..+ .+++.+++.||||+|||++|+.|++... ..+.+++|.++|++|-.|..++...
T Consensus 12 ~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 12 PGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcc
Confidence 4678999999998654 5666799999999999999999876654 5679999999999999999876554
No 150
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.36 E-value=2.7e-10 Score=134.89 Aligned_cols=126 Identities=17% Similarity=0.177 Sum_probs=94.9
Q ss_pred hhhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC---
Q 002357 68 EMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK--- 144 (931)
Q Consensus 68 ~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~--- 144 (931)
.....++..|++.|.-+.-.+. +.-++...||.|||+++.+|++.....|..|-|++++..||.+-++.+..+|.
T Consensus 68 a~~R~lG~r~ydvQlig~l~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LG 145 (870)
T CHL00122 68 ASFRTLGLRHFDVQLIGGLVLN--DGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLG 145 (870)
T ss_pred HHHHHhCCCCCchHhhhhHhhc--CCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence 3345678888899977755554 45699999999999999998876556799999999999999998887776654
Q ss_pred -CeEEEecccccC-----CCCCeeEecHH-----HHHHHHhc--CccccCcccEEEEeccccCC
Q 002357 145 -DVGLMTGDVTLS-----PNASCLVMTTE-----ILRGMLYR--GSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 145 -~vg~~tGd~~~~-----~~~~IlV~Tpe-----~L~~~l~~--~~~~l~~l~~vViDEaH~l~ 195 (931)
.||++.++.+.. -.++|+.+|.. -|++.+.. .....+.+.+.|+||||.++
T Consensus 146 Lsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 146 LTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred CceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 777777665532 25899999984 45544422 12245778999999999765
No 151
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.32 E-value=4.7e-12 Score=118.24 Aligned_cols=135 Identities=20% Similarity=0.222 Sum_probs=84.1
Q ss_pred cCCcEEEEcCCCCCcHHHHHH-HHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEY-AIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l-~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (931)
+|+--++-.++|+|||.-.+- .+.+++.++.|+|++.|||.++..+++.++..-..+..-........+.-|-|||...
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at 82 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHAT 82 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHH
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHH
Confidence 456678999999999986544 3556789999999999999999999999975532222111111334556788999999
Q ss_pred HHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc--CCCceEEEeccCCCChH
Q 002357 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL--PPAIKMVFLSATMSNAT 227 (931)
Q Consensus 169 L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l--~~~~q~v~lSAT~~n~~ 227 (931)
+...+.+ .....++++||+||||..-.. .-...-.+..+ .....+|++|||+|...
T Consensus 83 ~~~~~~~-p~~~~~yd~II~DEcH~~Dp~--sIA~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 83 YGHFLLN-PCRLKNYDVIIMDECHFTDPT--SIAARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp HHHHHHT-SSCTTS-SEEEECTTT--SHH--HHHHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred HHHHhcC-cccccCccEEEEeccccCCHH--HHhhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 8877765 445789999999999975421 11111222222 23468999999998654
No 152
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.31 E-value=1.5e-10 Score=138.66 Aligned_cols=149 Identities=19% Similarity=0.182 Sum_probs=97.9
Q ss_pred CCHHHHHHHHHHh--------cCCcEEEEcCCCCCcHHHHHHHHHHHHh---CCCEEEEEcCchhhHHHHHHHHHHhcC-
Q 002357 77 LDPFQRVSVACLE--------RNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEFK- 144 (931)
Q Consensus 77 l~~~Q~~ai~~l~--------~g~~vlv~apTGsGKTl~~~l~i~~~l~---~~~rvl~l~P~kaL~~Q~~~~l~~~~~- 144 (931)
-..||-+|++.+. .|-=++-.|-||+|||++=.- |..++. .|.|..|-.-.|.|--|.-+.+++..+
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L 487 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNL 487 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCCCCCCceEEEEccccceeccchHHHHHhcCC
Confidence 4578999998762 233367799999999987322 333442 356899999999999999888888765
Q ss_pred ---CeEEEeccccc----------------------------------------------------CC------CCCeeE
Q 002357 145 ---DVGLMTGDVTL----------------------------------------------------SP------NASCLV 163 (931)
Q Consensus 145 ---~vg~~tGd~~~----------------------------------------------------~~------~~~IlV 163 (931)
+..++.|+... ++ .++++|
T Consensus 488 ~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V 567 (1110)
T TIGR02562 488 SDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLV 567 (1110)
T ss_pred CccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEE
Confidence 45555543310 00 268999
Q ss_pred ecHHHHHHHH--hcCcc-ccC----cccEEEEeccccCCCCCchHHHHHHHHhcC-CCceEEEeccCCCChH
Q 002357 164 MTTEILRGML--YRGSE-VLK----EVAWVIFDEIHYMKDRERGVVWEESIIFLP-PAIKMVFLSATMSNAT 227 (931)
Q Consensus 164 ~Tpe~L~~~l--~~~~~-~l~----~l~~vViDEaH~l~~~~~g~~~~~ii~~l~-~~~q~v~lSAT~~n~~ 227 (931)
+|+..+.... .++.. .+. .=+.|||||+|...... ...+..++..+. -..++++||||+|...
T Consensus 568 ~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmSATLP~~l 638 (1110)
T TIGR02562 568 CTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSSATLPPAL 638 (1110)
T ss_pred ecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEeCCCCHHH
Confidence 9999887655 33221 111 13689999999775432 223344444332 3688999999999665
No 153
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=2.5e-10 Score=139.49 Aligned_cols=72 Identities=22% Similarity=0.281 Sum_probs=61.8
Q ss_pred ccCCCCC-CHHHHHHHHH----HhcCCcEEEEcCCCCCcHHHHHHHHHHHHh-CC--CEEEEEcCchhhHHHHHHHHHHh
Q 002357 71 KTYSFEL-DPFQRVSVAC----LERNESVLVSAHTSAGKTAVAEYAIAMAFR-DK--QRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 71 ~~~~f~l-~~~Q~~ai~~----l~~g~~vlv~apTGsGKTl~~~l~i~~~l~-~~--~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
-.|||++ +|.|.+.+.. +..+.++++.||||+|||++.+.+.+.... .+ .+++|.+.|..=..|..++++..
T Consensus 4 v~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 4 VYFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred eecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 3589995 9999998754 478899999999999999999888877654 34 79999999999999999999883
No 154
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.29 E-value=1.9e-09 Score=127.51 Aligned_cols=125 Identities=17% Similarity=0.165 Sum_probs=96.5
Q ss_pred hhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC----
Q 002357 69 MAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK---- 144 (931)
Q Consensus 69 ~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~---- 144 (931)
....+|..|+++|.-.--.+.+| -+....||-|||+++.+|++..-..|..|-+++++--||..=++.+..++.
T Consensus 78 ~~R~lG~r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGL 155 (939)
T PRK12902 78 SKRVLGMRHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGL 155 (939)
T ss_pred HHHHhCCCcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCC
Confidence 33467888889997776666544 589999999999999999888778899999999999999987777666544
Q ss_pred CeEEEecccccC-----CCCCeeEecHHHH-----HHHHhc--CccccCcccEEEEeccccCC
Q 002357 145 DVGLMTGDVTLS-----PNASCLVMTTEIL-----RGMLYR--GSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 145 ~vg~~tGd~~~~-----~~~~IlV~Tpe~L-----~~~l~~--~~~~l~~l~~vViDEaH~l~ 195 (931)
.||++.++.+.. -.++|+++|...| ++.+.. .....+.+.+.|+||||.++
T Consensus 156 tvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 156 SVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred eEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 778777765432 2689999999765 555432 22346789999999999775
No 155
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.26 E-value=1.5e-11 Score=106.67 Aligned_cols=71 Identities=35% Similarity=0.486 Sum_probs=65.4
Q ss_pred ccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCC
Q 002357 393 RGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRG 471 (931)
Q Consensus 393 ~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G 471 (931)
..+..+||++++.+|..++..|++|..+|||+|+++++|+|+|.+++|| .++. +.+...|.|++||++|.|
T Consensus 12 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi----~~~~----~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 12 IKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVI----IYDL----PWSPASYIQRIGRAGRAG 82 (82)
T ss_pred CeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEE----EeCC----CCCHHHHHHhhcccccCC
Confidence 4578999999999999999999999999999999999999999999888 4555 889999999999999986
No 156
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.17 E-value=4.4e-09 Score=113.93 Aligned_cols=158 Identities=22% Similarity=0.242 Sum_probs=101.0
Q ss_pred CCCCCCHHHHHHHHHHhcC-----CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC---
Q 002357 73 YSFELDPFQRVSVACLERN-----ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK--- 144 (931)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~~g-----~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~--- 144 (931)
+-.+|-|||++.+..+... ...+++...|.|||..+.-.++ +--.+...|+++|+.||+ ||..++.....
T Consensus 181 lii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLll-ae~~ra~tLVvaP~VAlm-QW~nEI~~~T~gsl 258 (791)
T KOG1002|consen 181 LIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLL-AEVDRAPTLVVAPTVALM-QWKNEIERHTSGSL 258 (791)
T ss_pred ceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHH-hccccCCeeEEccHHHHH-HHHHHHHHhccCce
Confidence 3456889999999877332 2368899999999987643333 323456699999999986 56777776654
Q ss_pred CeEEEecccccC-----CCCCeeEecHHHHHHHHhcC-------------ccccCccc--EEEEeccccCCCCCchHHHH
Q 002357 145 DVGLMTGDVTLS-----PNASCLVMTTEILRGMLYRG-------------SEVLKEVA--WVIFDEIHYMKDRERGVVWE 204 (931)
Q Consensus 145 ~vg~~tGd~~~~-----~~~~IlV~Tpe~L~~~l~~~-------------~~~l~~l~--~vViDEaH~l~~~~~g~~~~ 204 (931)
.+-+++|...-. .+++++.+|+..+-+...+. ...+..++ -||+||||.+.+.. ..-.
T Consensus 259 kv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~--snTA 336 (791)
T KOG1002|consen 259 KVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQ--SNTA 336 (791)
T ss_pred EEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccccccc--ccHH
Confidence 566677754321 36899999998776543221 12355554 48999999998652 2222
Q ss_pred HHHHhcCCCceEEEeccCCC-Ch-HHHHHHHHh
Q 002357 205 ESIIFLPPAIKMVFLSATMS-NA-TQFAEWICH 235 (931)
Q Consensus 205 ~ii~~l~~~~q~v~lSAT~~-n~-~e~~~~l~~ 235 (931)
...-.|. .....+||.|+- |. .++-..+..
T Consensus 337 rAV~~L~-tt~rw~LSGTPLQNrigElySLiRF 368 (791)
T KOG1002|consen 337 RAVFALE-TTYRWCLSGTPLQNRIGELYSLIRF 368 (791)
T ss_pred HHHHhhH-hhhhhhccCCcchhhHHHHHHHHHH
Confidence 2222222 334688999973 33 355555543
No 157
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.13 E-value=1.1e-09 Score=120.53 Aligned_cols=151 Identities=23% Similarity=0.182 Sum_probs=98.4
Q ss_pred HHHHHHHHH-------------hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCC-----CEEEEEcCchhhHHHHHHHHHH
Q 002357 80 FQRVSVACL-------------ERNESVLVSAHTSAGKTAVAEYAIAMAFRDK-----QRVIYTSPLKALSNQKYRELHQ 141 (931)
Q Consensus 80 ~Q~~ai~~l-------------~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~-----~rvl~l~P~kaL~~Q~~~~l~~ 141 (931)
||.+++..+ .....++++..+|+|||+.+...+......+ .++||++|. .+..||..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 688888766 2446789999999999998766555333222 259999999 888999999999
Q ss_pred hcC----CeEEEeccc-------ccCCCCCeeEecHHHHH-----HHHhcCccccCcccEEEEeccccCCCCCchHHHHH
Q 002357 142 EFK----DVGLMTGDV-------TLSPNASCLVMTTEILR-----GMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEE 205 (931)
Q Consensus 142 ~~~----~vg~~tGd~-------~~~~~~~IlV~Tpe~L~-----~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ 205 (931)
+++ ++-.+.|+. ......+++|+|++.+. ..... ..--++++||+||+|.+.+. ......
T Consensus 80 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~--l~~~~~~~vIvDEaH~~k~~--~s~~~~ 155 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKED--LKQIKWDRVIVDEAHRLKNK--DSKRYK 155 (299)
T ss_dssp HSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHH--HHTSEEEEEEETTGGGGTTT--TSHHHH
T ss_pred ccccccccccccccccccccccccccccceeeeccccccccccccccccc--cccccceeEEEecccccccc--cccccc
Confidence 984 456666665 33457899999999998 11110 11135899999999999644 334444
Q ss_pred HHHhcCCCceEEEeccCCC-C-hHHHHHHHHhh
Q 002357 206 SIIFLPPAIKMVFLSATMS-N-ATQFAEWICHL 236 (931)
Q Consensus 206 ii~~l~~~~q~v~lSAT~~-n-~~e~~~~l~~~ 236 (931)
.+..+. ....++||||+- | ..++...+...
T Consensus 156 ~l~~l~-~~~~~lLSgTP~~n~~~dl~~~l~~L 187 (299)
T PF00176_consen 156 ALRKLR-ARYRWLLSGTPIQNSLEDLYSLLRFL 187 (299)
T ss_dssp HHHCCC-ECEEEEE-SS-SSSGSHHHHHHHHHH
T ss_pred cccccc-cceEEeeccccccccccccccchhee
Confidence 555555 677889999973 3 34555555543
No 158
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.03 E-value=2.5e-08 Score=117.14 Aligned_cols=319 Identities=14% Similarity=0.127 Sum_probs=177.9
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHH-hCCCEEEEEcCchhhHHHHHHHHHHhcC-C-eEEEe-cccccC-CCCCeeEecH
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFK-D-VGLMT-GDVTLS-PNASCLVMTT 166 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l-~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~-vg~~t-Gd~~~~-~~~~IlV~Tp 166 (931)
.-.+|-||+|||||.+..-.+...+ .++.++++++-.++|+.+.+..|+...- + +.... ++..++ ...+-++...
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~~~~~~rLivqI 129 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYIIDGRPYDRLIVQI 129 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccccccccccCeEEEEe
Confidence 3468999999999987666655555 5689999999999999999999986632 1 22221 122222 2457788888
Q ss_pred HHHHHHHhcCccccCcccEEEEeccccCCCCCc-------hHHHHHHHHhcCCCceEEEeccCCCChHHHHHHHHhhc-C
Q 002357 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMKDRER-------GVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLH-K 238 (931)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~-------g~~~~~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~-~ 238 (931)
+.|.... ...+.++++||+||+-.+...-+ ..++..+...+.....+|++-||+.+.. .+++.... .
T Consensus 130 dSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~t--vdFl~~~Rp~ 204 (824)
T PF02399_consen 130 DSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQT--VDFLASCRPD 204 (824)
T ss_pred hhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHH--HHHHHHhCCC
Confidence 8886543 23477899999999975543322 2333333344567788999999997553 35555544 3
Q ss_pred CCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcC---CCCCCCCccCCCCCCCCC
Q 002357 239 QPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRE---NGKASGRMAKGGSGSGGS 315 (931)
Q Consensus 239 ~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 315 (931)
.+++++...+....-. .+ -..+... +...... ..+.......... ..+....... .......
T Consensus 205 ~~i~vI~n~y~~~~fs-------~R-~~~~~~~---l~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 269 (824)
T PF02399_consen 205 ENIHVIVNTYASPGFS-------NR-RCTFLRS---LGTDTLA---AALNPEDENADTSPTPKHSPDPTATA-AISNDET 269 (824)
T ss_pred CcEEEEEeeeecCCcc-------cc-eEEEecc---cCcHHHH---HHhCCcccccccCCCcCCCCcccccc-ccccchh
Confidence 4566665554322110 00 1111111 1111111 1111110000000 0000000000 0001111
Q ss_pred CH-HHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhcc
Q 002357 316 DI-FKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRG 394 (931)
Q Consensus 316 ~~-~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 394 (931)
.. ..|...|. .+..+-||+.|...++.++........ .
T Consensus 270 tF~~~L~~~L~--~gknIcvfsSt~~~~~~v~~~~~~~~~---------------------------------------~ 308 (824)
T PF02399_consen 270 TFFSELLARLN--AGKNICVFSSTVSFAEIVARFCARFTK---------------------------------------K 308 (824)
T ss_pred hHHHHHHHHHh--CCCcEEEEeChHHHHHHHHHHHHhcCC---------------------------------------e
Confidence 22 23333333 456788999999999888888765321 2
Q ss_pred ceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCc--EEEEecceecCCCCCcccCHHHHHHhhhccCCCCC
Q 002357 395 IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAK--TVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGK 472 (931)
Q Consensus 395 i~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~--~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~ 472 (931)
|..++|.-... .++. =++.+|++=|.++..|+++... +-++.+... . .--.+..+..||+||.-.-..
T Consensus 309 Vl~l~s~~~~~---dv~~---W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~--~--~~gpd~~s~~Q~lgRvR~l~~ 378 (824)
T PF02399_consen 309 VLVLNSTDKLE---DVES---WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVKP--M--SYGPDMVSVYQMLGRVRSLLD 378 (824)
T ss_pred EEEEcCCCCcc---cccc---ccceeEEEEeceEEEEeccchhhceEEEEEecC--C--CCCCcHHHHHHHHHHHHhhcc
Confidence 55666654444 2221 3578999999999999998653 234432221 1 012345568999999966654
Q ss_pred CCceEEEEEeCC
Q 002357 473 DDRGICIIMVDE 484 (931)
Q Consensus 473 ~~~g~~ii~~~~ 484 (931)
..+++..+.
T Consensus 379 ---~ei~v~~d~ 387 (824)
T PF02399_consen 379 ---NEIYVYIDA 387 (824)
T ss_pred ---CeEEEEEec
Confidence 345555543
No 159
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.03 E-value=9.6e-09 Score=116.05 Aligned_cols=148 Identities=20% Similarity=0.238 Sum_probs=100.8
Q ss_pred cCCCCCCHHHHHHHHHH-----hcCCcEEEEcCCCCCcHHHHHHHHHHH-----HhC-----CCEEEEEcCchhhHHHHH
Q 002357 72 TYSFELDPFQRVSVACL-----ERNESVLVSAHTSAGKTAVAEYAIAMA-----FRD-----KQRVIYTSPLKALSNQKY 136 (931)
Q Consensus 72 ~~~f~l~~~Q~~ai~~l-----~~g~~vlv~apTGsGKTl~~~l~i~~~-----l~~-----~~rvl~l~P~kaL~~Q~~ 136 (931)
.+.+++-|+|+.++..+ ..+...++....|-|||+...-.|+.. .++ ...+||+||- .|+.||+
T Consensus 321 g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~ 399 (901)
T KOG4439|consen 321 GLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWE 399 (901)
T ss_pred cceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHH
Confidence 34566899999999887 234578999999999999643333321 111 1259999997 8999999
Q ss_pred HHHHHhcC----CeEEEecccccC------CCCCeeEecHHHHHH----HHh--cCccccCc--ccEEEEeccccCCCCC
Q 002357 137 RELHQEFK----DVGLMTGDVTLS------PNASCLVMTTEILRG----MLY--RGSEVLKE--VAWVIFDEIHYMKDRE 198 (931)
Q Consensus 137 ~~l~~~~~----~vg~~tGd~~~~------~~~~IlV~Tpe~L~~----~l~--~~~~~l~~--l~~vViDEaH~l~~~~ 198 (931)
.++..... .|-+++|....+ ..+||||+|+..+.+ -+. .....+.. +.-||+||||.+.+.
T Consensus 400 ~Ev~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~- 478 (901)
T KOG4439|consen 400 AEVARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNS- 478 (901)
T ss_pred HHHHHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhccc-
Confidence 99988876 677888876322 258999999987665 111 11222333 456999999999875
Q ss_pred chHHHHHHHHhcCCCceEEEeccCC
Q 002357 199 RGVVWEESIIFLPPAIKMVFLSATM 223 (931)
Q Consensus 199 ~g~~~~~ii~~l~~~~q~v~lSAT~ 223 (931)
...-...+..|... -..++|+|+
T Consensus 479 -~tq~S~AVC~L~a~-~RWclTGTP 501 (901)
T KOG4439|consen 479 -NTQCSKAVCKLSAK-SRWCLTGTP 501 (901)
T ss_pred -chhHHHHHHHHhhc-ceeecccCc
Confidence 33344444445433 357888887
No 160
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.99 E-value=6.8e-08 Score=115.73 Aligned_cols=122 Identities=17% Similarity=0.143 Sum_probs=82.4
Q ss_pred cCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhc---C-CeE
Q 002357 72 TYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEF---K-DVG 147 (931)
Q Consensus 72 ~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~---~-~vg 147 (931)
.|+..++++|.-.=-.+.+ .-+....||-|||+++.+|++.....|..|-+++..--||.-=++.+...| | .||
T Consensus 165 ~W~m~~yDVQliGgivLh~--G~IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg 242 (1112)
T PRK12901 165 TWDMVHYDVQLIGGVVLHQ--GKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVD 242 (1112)
T ss_pred cCCCcccchHHhhhhhhcC--CceeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhhhccHHHHHHHHHHhCCcee
Confidence 3455566777555444444 458899999999999999988777778888888888889876555554444 4 677
Q ss_pred EEec-cccc-----CCCCCeeEecHHH-----HHHHHhc--CccccCcccEEEEeccccCC
Q 002357 148 LMTG-DVTL-----SPNASCLVMTTEI-----LRGMLYR--GSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 148 ~~tG-d~~~-----~~~~~IlV~Tpe~-----L~~~l~~--~~~~l~~l~~vViDEaH~l~ 195 (931)
++.. +.+. .-.+||..+|..- |++-+.. .....+.+.+.|+||||.++
T Consensus 243 ~i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 243 CIDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred ecCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 6654 2221 1268999999843 3332221 12245678999999999765
No 161
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.97 E-value=5.3e-09 Score=122.52 Aligned_cols=144 Identities=19% Similarity=0.148 Sum_probs=99.0
Q ss_pred CCCCCCHHHHHHHHHH----hcCCcEEEEcCCCCCcHHHHHHHHHHH---HhCCCEEEEEcCchhhHHHHHHHHHHhcCC
Q 002357 73 YSFELDPFQRVSVACL----ERNESVLVSAHTSAGKTAVAEYAIAMA---FRDKQRVIYTSPLKALSNQKYRELHQEFKD 145 (931)
Q Consensus 73 ~~f~l~~~Q~~ai~~l----~~g~~vlv~apTGsGKTl~~~l~i~~~---l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~ 145 (931)
-|-++.+||...+..+ .++-|.+++..+|-|||..-.--|... ....+.-+|++|+-.|.|. ..+|..+.+.
T Consensus 391 ~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW-~~Ef~kWaPS 469 (1157)
T KOG0386|consen 391 QGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNW-SSEFPKWAPS 469 (1157)
T ss_pred cCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCc-hhhccccccc
Confidence 3557999999999876 556789999999999998653333322 2345678999999999985 6788888887
Q ss_pred eEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccC--cccEEEEeccccCCCCCchHHHHHHHHhcCC
Q 002357 146 VGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLK--EVAWVIFDEIHYMKDRERGVVWEESIIFLPP 212 (931)
Q Consensus 146 vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~--~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~ 212 (931)
+..+.+.-+. ....+|+++|+|.+.. .+..|. ++.++||||-|+|.+. ...+...+...-.
T Consensus 470 v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~t~y~ 543 (1157)
T KOG0386|consen 470 VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTLNTHYR 543 (1157)
T ss_pred eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----CHHHHhccCCcceeecccccccch--hhHHHHHhhcccc
Confidence 6655443321 2468999999997753 333344 4567999999999875 2233333332223
Q ss_pred CceEEEeccCC
Q 002357 213 AIKMVFLSATM 223 (931)
Q Consensus 213 ~~q~v~lSAT~ 223 (931)
..+.+++|.|+
T Consensus 544 ~q~RLLLTGTP 554 (1157)
T KOG0386|consen 544 AQRRLLLTGTP 554 (1157)
T ss_pred chhhhhhcCCh
Confidence 44567777775
No 162
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.92 E-value=9.3e-09 Score=111.59 Aligned_cols=71 Identities=20% Similarity=0.228 Sum_probs=58.7
Q ss_pred cCCCCCCHHHHHHH----HHHhcCCcEEEEcCCCCCcHHHHHHHHHHHH-hCCC-----EEEEEcCchhhHHHHHHHHHH
Q 002357 72 TYSFELDPFQRVSV----ACLERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQ-----RVIYTSPLKALSNQKYRELHQ 141 (931)
Q Consensus 72 ~~~f~l~~~Q~~ai----~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l-~~~~-----rvl~l~P~kaL~~Q~~~~l~~ 141 (931)
.|||+++|.|.+.+ ..+.+|.++++.||||+|||++++.|++..+ ..+. +++|.++|..+..|...++++
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 4 YFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 38999999999944 5568899999999999999999999886544 3333 899999999998888777765
Q ss_pred h
Q 002357 142 E 142 (931)
Q Consensus 142 ~ 142 (931)
.
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 4
No 163
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.92 E-value=9.3e-09 Score=111.59 Aligned_cols=71 Identities=20% Similarity=0.228 Sum_probs=58.7
Q ss_pred cCCCCCCHHHHHHH----HHHhcCCcEEEEcCCCCCcHHHHHHHHHHHH-hCCC-----EEEEEcCchhhHHHHHHHHHH
Q 002357 72 TYSFELDPFQRVSV----ACLERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQ-----RVIYTSPLKALSNQKYRELHQ 141 (931)
Q Consensus 72 ~~~f~l~~~Q~~ai----~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l-~~~~-----rvl~l~P~kaL~~Q~~~~l~~ 141 (931)
.|||+++|.|.+.+ ..+.+|.++++.||||+|||++++.|++..+ ..+. +++|.++|..+..|...++++
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 4 YFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 38999999999944 5568899999999999999999999886544 3333 899999999998888777765
Q ss_pred h
Q 002357 142 E 142 (931)
Q Consensus 142 ~ 142 (931)
.
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 4
No 164
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.81 E-value=1.8e-07 Score=118.88 Aligned_cols=359 Identities=15% Similarity=0.108 Sum_probs=206.5
Q ss_pred CCCCHHHHHHHHHHh-----cCCcEEEEcCCCCCcHHHHHHHHHHHHh---C-CCEEEEEcCchhhHHHHHHHHHHhcC-
Q 002357 75 FELDPFQRVSVACLE-----RNESVLVSAHTSAGKTAVAEYAIAMAFR---D-KQRVIYTSPLKALSNQKYRELHQEFK- 144 (931)
Q Consensus 75 f~l~~~Q~~ai~~l~-----~g~~vlv~apTGsGKTl~~~l~i~~~l~---~-~~rvl~l~P~kaL~~Q~~~~l~~~~~- 144 (931)
-++.+||.+.+..+. .+.+.+++...|.|||+.....+..... . .+.+++++|+ ++..+|.+++.++.+
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~~ 415 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAPD 415 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCcc
Confidence 358999999987654 3678899999999999876555443222 1 3589999999 777788899987776
Q ss_pred -C-eEEEeccccc-C---------CC------CCeeEecHHHHHHHH-hcCccccCcccEEEEeccccCCCCCchHHHHH
Q 002357 145 -D-VGLMTGDVTL-S---------PN------ASCLVMTTEILRGML-YRGSEVLKEVAWVIFDEIHYMKDRERGVVWEE 205 (931)
Q Consensus 145 -~-vg~~tGd~~~-~---------~~------~~IlV~Tpe~L~~~l-~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ 205 (931)
. +-...|.... . .. .+++++|.+.+...+ ......-..++++|+||+|.+.+.. +..+..
T Consensus 416 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s~~~~~ 494 (866)
T COG0553 416 LRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-SSEGKA 494 (866)
T ss_pred ccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-hHHHHH
Confidence 3 4456665531 0 01 689999999998732 1112223468899999999987643 333333
Q ss_pred HHHhcCCCceEEEeccCC-CChH-HHHHHHH-hhcCCCeEEE----ec-CCCCCcc---------------------eee
Q 002357 206 SIIFLPPAIKMVFLSATM-SNAT-QFAEWIC-HLHKQPCHVV----YT-DFRPTPL---------------------QHY 256 (931)
Q Consensus 206 ii~~l~~~~q~v~lSAT~-~n~~-e~~~~l~-~~~~~~~~v~----~~-~~rp~pl---------------------~~~ 256 (931)
+. .+.... .+.+|.|| .|.. ++-..+. .......... .. ...|... ..+
T Consensus 495 l~-~~~~~~-~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f 572 (866)
T COG0553 495 LQ-FLKALN-RLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPF 572 (866)
T ss_pred HH-HHhhcc-eeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHH
Confidence 33 444333 38888887 3332 3333333 2111100000 00 0000000 000
Q ss_pred eeccCCCc--ee----------EeeCccchhchhhHHHHHH-------HHHhhhcC------------------------
Q 002357 257 VFPVGGSG--LY----------LVVDEKEQFREDNFVKLQD-------TFLKQKIG------------------------ 293 (931)
Q Consensus 257 ~~~~~~~~--~~----------~~~~~~~~~~~~~~~~~~~-------~l~~~~~~------------------------ 293 (931)
+....... +. ..++..+ .....|..... .+......
T Consensus 573 ~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~-~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~ 651 (866)
T COG0553 573 ILRRTKEDVEVLKELPPKIEKVLECELSE-EQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQI 651 (866)
T ss_pred hhcccccchhHHHhCChhhhhhhhhcccH-HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHh
Confidence 00000000 00 0000000 00001111111 11110000
Q ss_pred --CCcCCCCCCCCccCC----------------CCCCCC-CCHHHHHHHH---HHcCCC--cEEEEecCHHHHHHHHHHh
Q 002357 294 --GRRENGKASGRMAKG----------------GSGSGG-SDIFKIVKMI---MERKFQ--PVIVFSFSRRECEQHAMSM 349 (931)
Q Consensus 294 --~~~~~~~~~~~~~~~----------------~~~~~~-~~~~~ll~~l---~~~~~~--~~IVF~~sr~~~~~la~~L 349 (931)
.+............. ...... .+...+.+.+ ....+. ++++|++.....+.+...+
T Consensus 652 ~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l 731 (866)
T COG0553 652 CNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYL 731 (866)
T ss_pred ccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHH
Confidence 000000000000000 000000 2344444444 122445 8999999999998888888
Q ss_pred ccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcC--CceEEEecch
Q 002357 350 SKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEG--LVKALFATET 427 (931)
Q Consensus 350 ~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g--~i~vLvaT~~ 427 (931)
...++. +..++|+++...|...+..|.++ ..-++++|.+
T Consensus 732 ~~~~~~---------------------------------------~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~ka 772 (866)
T COG0553 732 KALGIK---------------------------------------YVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKA 772 (866)
T ss_pred HhcCCc---------------------------------------EEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecc
Confidence 765522 57889999999999999999986 5556678889
Q ss_pred hhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 428 FAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 428 la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
.+.|+|.-..++|| .||. ++++....|...||.|.|+.....++-+....
T Consensus 773 gg~glnLt~a~~vi----~~d~----~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~ 822 (866)
T COG0553 773 GGLGLNLTGADTVI----LFDP----WWNPAVELQAIDRAHRIGQKRPVKVYRLITRG 822 (866)
T ss_pred cccceeecccceEE----Eecc----ccChHHHHHHHHHHHHhcCcceeEEEEeecCC
Confidence 99999999999999 6676 78889999999999999998777777777665
No 165
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.80 E-value=2e-08 Score=115.87 Aligned_cols=358 Identities=20% Similarity=0.199 Sum_probs=199.2
Q ss_pred HHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCC-----CEEEEEcCchhhHHHHHHHHHHhcC-CeEEEecc--
Q 002357 81 QRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK-----QRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGD-- 152 (931)
Q Consensus 81 Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~-----~rvl~l~P~kaL~~Q~~~~l~~~~~-~vg~~tGd-- 152 (931)
-...++.+..+..+++-+.||.|||..+.--|+..+..+ ..+.+.-|++--+.-+.+++...-+ .+|-..|-
T Consensus 383 ~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~v 462 (1282)
T KOG0921|consen 383 RSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNV 462 (1282)
T ss_pred HHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccc
Confidence 344456667788899999999999998887777776432 4578888998877777777655433 33332221
Q ss_pred ----cccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCC-CCCchHHHHHHHHhcCCCceEEEeccCCCChH
Q 002357 153 ----VTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMK-DRERGVVWEESIIFLPPAIKMVFLSATMSNAT 227 (931)
Q Consensus 153 ----~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~-~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n~~ 227 (931)
....+.-.|+.+|-+.+.++++.+ +..+.++|+||.|.-- +..+-..+..-++...+..+++++|||+. ..
T Consensus 463 Rf~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatId-Td 538 (1282)
T KOG0921|consen 463 RFDSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATID-TD 538 (1282)
T ss_pred cccccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccc-hh
Confidence 122345678999999999999875 5689999999999553 22222223333334456788999999983 44
Q ss_pred HHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCcc----chhchhhHHHHHHHHH-hhhcC-CCcCCCCC
Q 002357 228 QFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEK----EQFREDNFVKLQDTFL-KQKIG-GRRENGKA 301 (931)
Q Consensus 228 e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~-~~~~~-~~~~~~~~ 301 (931)
-|..+++.... .++ ..|..|.+.|....-......+.... .++....-....+.-. +.... ++.-....
T Consensus 539 ~f~~~f~~~p~---~~~--~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~ 613 (1282)
T KOG0921|consen 539 LFTNFFSSIPD---VTV--HGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNEST 613 (1282)
T ss_pred hhhhhhccccc---eee--ccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchh
Confidence 45555543321 111 12223322211000000000000000 0000000000000000 00000 00000000
Q ss_pred CCCccCCCCCCCCC----CHHHHHHHHHHcC-CCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCc
Q 002357 302 SGRMAKGGSGSGGS----DIFKIVKMIMERK-FQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNE 376 (931)
Q Consensus 302 ~~~~~~~~~~~~~~----~~~~ll~~l~~~~-~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~ 376 (931)
+... ...+... .+.+++..+...+ .+-++||.+--...-.+...+.....-.
T Consensus 614 ~~am---~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg-------------------- 670 (1282)
T KOG0921|consen 614 RTAM---SRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFG-------------------- 670 (1282)
T ss_pred hhhh---hcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhc--------------------
Confidence 0000 0011111 2333333333332 3457888887777766666664321110
Q ss_pred ccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCC-------
Q 002357 377 EDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDG------- 449 (931)
Q Consensus 377 ~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~------- 449 (931)
.+-+.-+...|+.+...+..+|.+....|..+++..|.++...|.+.++..|+....-+-.
T Consensus 671 ------------~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn 738 (1282)
T KOG0921|consen 671 ------------QANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNN 738 (1282)
T ss_pred ------------cchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccc
Confidence 1112235567888888888888888899999999999999999999997777653322210
Q ss_pred ---CCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 450 ---DSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 450 ---~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
..+.+.+.....||.||+||... |.|+.+|...
T Consensus 739 ~~~~Atvw~sktn~eqr~gr~grvR~---G~~f~lcs~a 774 (1282)
T KOG0921|consen 739 MTHYATVWASKTNLEQRKGRAGRVRP---GFCFHLCSRA 774 (1282)
T ss_pred eeeeeeecccccchHhhcccCceecc---cccccccHHH
Confidence 02335677889999999999875 8899888753
No 166
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=98.76 E-value=2.8e-07 Score=104.07 Aligned_cols=124 Identities=12% Similarity=0.054 Sum_probs=95.5
Q ss_pred CCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhc
Q 002357 314 GSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKR 393 (931)
Q Consensus 314 ~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 393 (931)
...+..++..+.. .+.++++|..-.+..+-+-.+|...+++-
T Consensus 1030 L~~LDeLL~kLka-egHRvL~yfQMTkM~dl~EdYl~yr~Y~y------------------------------------- 1071 (1185)
T KOG0388|consen 1030 LVVLDELLPKLKA-EGHRVLMYFQMTKMIDLIEDYLVYRGYTY------------------------------------- 1071 (1185)
T ss_pred eeeHHHHHHHhhc-CCceEEehhHHHHHHHHHHHHHHhhccce-------------------------------------
Confidence 3445566665554 56889999998888888888887666552
Q ss_pred cceeccCCCCHHHHHHHHHHHhcCCc-eEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCC
Q 002357 394 GIAVHHSGLLPVIKELVELLFQEGLV-KALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGK 472 (931)
Q Consensus 394 gi~~~hg~l~~~~R~~v~~~F~~g~i-~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~ 472 (931)
.-+.|.....+|..+...|+...+ -.|.+|.+.+.|||+.+.+.||. ||. .++|.-=.|...||.|.|+
T Consensus 1072 --lRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViF----YdS----DWNPT~D~QAMDRAHRLGQ 1141 (1185)
T KOG0388|consen 1072 --LRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIF----YDS----DWNPTADQQAMDRAHRLGQ 1141 (1185)
T ss_pred --EEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEE----ecC----CCCcchhhHHHHHHHhccC
Confidence 346788889999999999997654 45679999999999999999994 444 4455557799999999999
Q ss_pred CCceEEEEEeCCc
Q 002357 473 DDRGICIIMVDEQ 485 (931)
Q Consensus 473 ~~~g~~ii~~~~~ 485 (931)
.....++-+....
T Consensus 1142 Trdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1142 TRDVTVYRLITRG 1154 (1185)
T ss_pred ccceeeeeecccc
Confidence 8777777766544
No 167
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.65 E-value=7.2e-07 Score=111.30 Aligned_cols=129 Identities=16% Similarity=0.084 Sum_probs=89.1
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHH--hCCCEEEEEcCchhhHHHHHHHHHHhcCCeEE--Eecccc-----cC-CCCCe
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAF--RDKQRVIYTSPLKALSNQKYRELHQEFKDVGL--MTGDVT-----LS-PNASC 161 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l--~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~--~tGd~~-----~~-~~~~I 161 (931)
+..+|+--||||||+.........+ .....|++++-++.|-.|..+.|..+...... -..+.. +. ....|
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~~~i 353 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLEDGKGKI 353 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHHhcCCCcE
Confidence 5689999999999998665544443 45689999999999999999999988652222 111111 12 23589
Q ss_pred eEecHHHHHHHHhcC-c-cccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCC
Q 002357 162 LVMTTEILRGMLYRG-S-EVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 162 lV~Tpe~L~~~l~~~-~-~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~ 224 (931)
+|+|.+.+....... . ..-++==.||+||||+--. |..-..+...++ +...++||+||-
T Consensus 354 i~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~---G~~~~~~~~~~~-~a~~~gFTGTPi 414 (962)
T COG0610 354 IVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY---GELAKLLKKALK-KAIFIGFTGTPI 414 (962)
T ss_pred EEEEecccchhhhcccccccCCCcEEEEEechhhccc---cHHHHHHHHHhc-cceEEEeeCCcc
Confidence 999999998877553 1 1122334689999998753 444444444444 488999999984
No 168
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.38 E-value=1.4e-06 Score=92.23 Aligned_cols=125 Identities=19% Similarity=0.250 Sum_probs=92.0
Q ss_pred hhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC----
Q 002357 69 MAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK---- 144 (931)
Q Consensus 69 ~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~---- 144 (931)
.....++.|++.|.-+.-.+..|+ ++...||=|||+++.++.+...-.|..|-+++....|+..=++++..+|.
T Consensus 70 ~~r~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGl 147 (266)
T PF07517_consen 70 ARRTLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGL 147 (266)
T ss_dssp HHHHTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhh
Confidence 334678899999999998887766 99999999999998887776667889999999999999988887777655
Q ss_pred CeEEEecccccCC-----CCCeeEecHHHHH-----HHHhcCc--cccCcccEEEEeccccCC
Q 002357 145 DVGLMTGDVTLSP-----NASCLVMTTEILR-----GMLYRGS--EVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 145 ~vg~~tGd~~~~~-----~~~IlV~Tpe~L~-----~~l~~~~--~~l~~l~~vViDEaH~l~ 195 (931)
.+|..+++.+... .++|+.+|...+. +.+.... ...+.+.++|+||||.+.
T Consensus 148 sv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 148 SVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp -EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred ccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 7888888765322 5789999997664 2222222 225789999999999664
No 169
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.34 E-value=0.00016 Score=81.46 Aligned_cols=254 Identities=11% Similarity=0.049 Sum_probs=144.9
Q ss_pred CCCeeEecHHHHHHHHhc------CccccCcccEEEEeccccCC--CCCchHHHHHHHHh---cCC--------------
Q 002357 158 NASCLVMTTEILRGMLYR------GSEVLKEVAWVIFDEIHYMK--DRERGVVWEESIIF---LPP-------------- 212 (931)
Q Consensus 158 ~~~IlV~Tpe~L~~~l~~------~~~~l~~l~~vViDEaH~l~--~~~~g~~~~~ii~~---l~~-------------- 212 (931)
++||+|++|=-|+..+.. ....|+.++++|+|.+|.+. +|++ +..++.. .|+
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~H---v~~v~~~lN~~P~~~~~~DfsRVR~w~ 207 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEH---VLHVFEHLNLQPKKSHDTDFSRVRPWY 207 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHH---HHHHHHHhccCCCCCCCCCHHHHHHHH
Confidence 589999999888877763 34678999999999999765 3322 2223333 231
Q ss_pred -------CceEEEeccCCCChHHHHHHHHhhcCC---CeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHH
Q 002357 213 -------AIKMVFLSATMSNATQFAEWICHLHKQ---PCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVK 282 (931)
Q Consensus 213 -------~~q~v~lSAT~~n~~e~~~~l~~~~~~---~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (931)
-.|.|++|+..... +...+.....+ .+.+........-+... ..+..+.+.-++....... ...
T Consensus 208 Ldg~a~~~RQtii~S~~~~pe--~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v--~~~v~Q~F~r~~~~s~~~~--~d~ 281 (442)
T PF06862_consen 208 LDGQAKYYRQTIIFSSFQTPE--INSLFNRHCQNYAGKVRLKPPYEASGVISQV--VVQVRQVFQRFDCSSPADD--PDA 281 (442)
T ss_pred HcCcchheeEeEEecCCCCHH--HHHHHHhhCcCccceEEEeeccccceeeecc--ccCCceEEEEecCCCcchh--hhH
Confidence 25899999987532 33444432111 11111111000000110 1112333333332211100 000
Q ss_pred HHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHH-HcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHH
Q 002357 283 LQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIM-ERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKD 361 (931)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~-~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~ 361 (931)
..+.. ...++-.+. ......++||++|--+=-.+-..|.+.+..
T Consensus 282 Rf~yF-----------------------------~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~s------ 326 (442)
T PF06862_consen 282 RFKYF-----------------------------TKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENIS------ 326 (442)
T ss_pred HHHHH-----------------------------HHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCe------
Confidence 00000 112333333 445678999999977777777777643332
Q ss_pred HHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchh--hcccCCCCcEE
Q 002357 362 TVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETF--AMGLNMPAKTV 439 (931)
Q Consensus 362 ~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~l--a~GIdip~~~v 439 (931)
.+.+|--.++.+-...-..|.+|..++|+-|+=+ =+=..+.++..
T Consensus 327 ---------------------------------F~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~ 373 (442)
T PF06862_consen 327 ---------------------------------FVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRH 373 (442)
T ss_pred ---------------------------------EEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcE
Confidence 4667777888888888899999999999999954 35666777888
Q ss_pred EEecceecCCCCCcccCHHHHHHhhhccCCCC----CCCceEEEEEeCCccCHHHHHhhhhc
Q 002357 440 VFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRG----KDDRGICIIMVDEQMEMNTLKDMVLE 497 (931)
Q Consensus 440 VI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G----~~~~g~~ii~~~~~~~~~~l~~l~~~ 497 (931)
|| .|.+ |..|.=|-..++-.+... ....+.|.++++.. |.-.+++++..
T Consensus 374 vi----FY~~----P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~-D~~~LErIVGt 426 (442)
T PF06862_consen 374 VI----FYGP----PENPQFYSELLNMLDESSGGEVDAADATVTVLYSKY-DALRLERIVGT 426 (442)
T ss_pred EE----EECC----CCChhHHHHHHhhhcccccccccccCceEEEEecHh-HHHHHHHHhCH
Confidence 87 5666 666665555554333222 23456778877765 66667776644
No 170
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.29 E-value=5.6e-06 Score=84.76 Aligned_cols=122 Identities=16% Similarity=0.182 Sum_probs=75.6
Q ss_pred CCCHHHHHHHHHHh-cCC-cEEEEcCCCCCcHHHHHHHHHHHH-hCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecc
Q 002357 76 ELDPFQRVSVACLE-RNE-SVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGD 152 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~-~g~-~vlv~apTGsGKTl~~~l~i~~~l-~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd 152 (931)
+|++-|.+|+..+. .+. -.++.+|.|+|||.+... +...+ ..+.++++++||...+....+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~-~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~------------ 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKA-LAEALEAAGKRVIGLAPTNKAAKELREKTG------------ 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHH-HHHHHHHTT--EEEEESSHHHHHHHHHHHT------------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHH-HHHHHHhCCCeEEEECCcHHHHHHHHHhhC------------
Confidence 37899999999884 443 467889999999986443 33333 567999999999988887555521
Q ss_pred cccCCCCCeeEecHHHHHHHHhcCc----cccCcccEEEEeccccCCCCCchHHHHHHHHhcCC-CceEEEeccC
Q 002357 153 VTLSPNASCLVMTTEILRGMLYRGS----EVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPP-AIKMVFLSAT 222 (931)
Q Consensus 153 ~~~~~~~~IlV~Tpe~L~~~l~~~~----~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~-~~q~v~lSAT 222 (931)
+-..|-..+........ ..+...++||+||+-++. ...+..++...+. ..++|++.=+
T Consensus 68 --------~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 68 --------IEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKKSGAKLILVGDP 130 (196)
T ss_dssp --------S-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T-T-EEEEEE-T
T ss_pred --------cchhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHhcCCEEEEECCc
Confidence 22334333322221111 015567899999999987 4567777777766 6777777543
No 171
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.27 E-value=5.4e-06 Score=87.38 Aligned_cols=66 Identities=20% Similarity=0.275 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHhcCCc-EEEEcCCCCCcHHHHHHHHHHH--------HhCCCEEEEEcCchhhHHHHHHHHHH
Q 002357 76 ELDPFQRVSVACLERNES-VLVSAHTSAGKTAVAEYAIAMA--------FRDKQRVIYTSPLKALSNQKYRELHQ 141 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~-vlv~apTGsGKTl~~~l~i~~~--------l~~~~rvl~l~P~kaL~~Q~~~~l~~ 141 (931)
+|++.|.+|+..+..... .+|.||+|+|||.+....+... ...+.++|+++|+.+-+++..+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 378899999999988887 9999999999996655444444 46788999999999999999999988
No 172
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.22 E-value=6.3e-06 Score=83.75 Aligned_cols=124 Identities=20% Similarity=0.288 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCC--CEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccc
Q 002357 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK--QRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVT 154 (931)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~--~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~ 154 (931)
.++.|..+++++....-+++.+|.|+|||+.+..+.+..+..+ .+++|+-|..+. ..++|.+.|+..
T Consensus 5 ~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~-----------~~~lGflpG~~~ 73 (205)
T PF02562_consen 5 KNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA-----------GEDLGFLPGDLE 73 (205)
T ss_dssp -SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T-----------T----SS-----
T ss_pred CCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC-----------ccccccCCCCHH
Confidence 6889999999999889999999999999999988887777654 589999998754 224555666543
Q ss_pred cCC-------------------------CCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHh
Q 002357 155 LSP-------------------------NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF 209 (931)
Q Consensus 155 ~~~-------------------------~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~ 209 (931)
-.- ...|-+..+.-+ |+.. ++ -.+||+|||+.+. -..+..++.+
T Consensus 74 eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i-----RGrt-~~-~~~iIvDEaQN~t----~~~~k~ilTR 142 (205)
T PF02562_consen 74 EKMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFI-----RGRT-FD-NAFIIVDEAQNLT----PEELKMILTR 142 (205)
T ss_dssp ----TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGG-----TT---B--SEEEEE-SGGG------HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhh-----cCcc-cc-ceEEEEecccCCC----HHHHHHHHcc
Confidence 111 112222222211 2222 22 3899999999987 5567788888
Q ss_pred cCCCceEEEeccC
Q 002357 210 LPPAIKMVFLSAT 222 (931)
Q Consensus 210 l~~~~q~v~lSAT 222 (931)
+..+.+++++.=+
T Consensus 143 ~g~~skii~~GD~ 155 (205)
T PF02562_consen 143 IGEGSKIIITGDP 155 (205)
T ss_dssp B-TT-EEEEEE--
T ss_pred cCCCcEEEEecCc
Confidence 8888888887543
No 173
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.20 E-value=3.1e-05 Score=90.64 Aligned_cols=141 Identities=18% Similarity=0.085 Sum_probs=91.9
Q ss_pred CCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhcccee--ccCCCCHH
Q 002357 328 KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAV--HHSGLLPV 405 (931)
Q Consensus 328 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~--~hg~l~~~ 405 (931)
-+.++|||..|-...+-+-.+|.... +-...+..-|.+........+|..+ +.|.....
T Consensus 1141 IGDKlLVFSQSL~SLdLIe~fLe~v~-------------------r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~ 1201 (1567)
T KOG1015|consen 1141 IGDKLLVFSQSLISLDLIEDFLELVS-------------------REGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQ 1201 (1567)
T ss_pred hcceeEEeecccchhHHHHHHHHhhc-------------------ccCccccccccccccccceecCCceEEecCcccHH
Confidence 45788999888777766666664311 1111112222222222223344444 57999999
Q ss_pred HHHHHHHHHhcCC----ceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEE
Q 002357 406 IKELVELLFQEGL----VKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIM 481 (931)
Q Consensus 406 ~R~~v~~~F~~g~----i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~ 481 (931)
.|+.+...|++-. --.||+|.+.+.|||+-+.+-|| -||+ .++|.-=+|-+=|+-|.|+....+++-+
T Consensus 1202 ~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVI----IfDa----sWNPSyDtQSIFRvyRfGQtKPvyiYRf 1273 (1567)
T KOG1015|consen 1202 SRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVI----IFDA----SWNPSYDTQSIFRVYRFGQTKPVYIYRF 1273 (1567)
T ss_pred HHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEE----EEec----ccCCccchHHHHHHHhhcCcCceeehhh
Confidence 9999999998531 23789999999999999999888 4555 5555667899999999999877666666
Q ss_pred eCCc-cCHHHHHhhh
Q 002357 482 VDEQ-MEMNTLKDMV 495 (931)
Q Consensus 482 ~~~~-~~~~~l~~l~ 495 (931)
.... ++....++-+
T Consensus 1274 iAqGTmEeKIYkRQV 1288 (1567)
T KOG1015|consen 1274 IAQGTMEEKIYKRQV 1288 (1567)
T ss_pred hhcccHHHHHHHHHH
Confidence 5443 3444444433
No 174
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.17 E-value=1.6e-05 Score=96.80 Aligned_cols=130 Identities=17% Similarity=0.237 Sum_probs=84.0
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhC--CCEEEEEcCchhhHHHHHHHHH---------HhcCC--e--EEEeccc---
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSNQKYRELH---------QEFKD--V--GLMTGDV--- 153 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~--~~rvl~l~P~kaL~~Q~~~~l~---------~~~~~--v--g~~tGd~--- 153 (931)
-++.+..+||+|||.+|+-.|...... -.++||++|+.|+-..+..-+. ..+++ + -++.+..
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 378899999999999998888777644 4689999999998877654433 33332 2 2233221
Q ss_pred ----c-c-------------CCCCCeeEecHHHHHHHHh--c--------Cc-cccCcc----cEEEEeccccCCCCCch
Q 002357 154 ----T-L-------------SPNASCLVMTTEILRGMLY--R--------GS-EVLKEV----AWVIFDEIHYMKDRERG 200 (931)
Q Consensus 154 ----~-~-------------~~~~~IlV~Tpe~L~~~l~--~--------~~-~~l~~l----~~vViDEaH~l~~~~~g 200 (931)
+ . +....|+|+|.+.+.+-.. + +. ..+..+ =.||+||.|++... +
T Consensus 140 ~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~--~ 217 (986)
T PRK15483 140 SGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD--N 217 (986)
T ss_pred cccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc--h
Confidence 0 0 1146899999998875221 1 11 111112 27899999999653 4
Q ss_pred HHHHHHHHhcCCCceEEEeccCCCC
Q 002357 201 VVWEESIIFLPPAIKMVFLSATMSN 225 (931)
Q Consensus 201 ~~~~~ii~~l~~~~q~v~lSAT~~n 225 (931)
..|+.+ ..+.+.. ++.+|||.++
T Consensus 218 k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 218 KFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred HHHHHH-HhcCccc-EEEEeeecCC
Confidence 467655 5554433 5669999986
No 175
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.13 E-value=3.3e-05 Score=81.91 Aligned_cols=147 Identities=23% Similarity=0.225 Sum_probs=99.3
Q ss_pred CCCHHHHHHHHHHh----------cCCcEEEEcCCCCCcHHHHHHHHHHHHhCC-CEEEEEcCchhhHHHHHHHHHHhcC
Q 002357 76 ELDPFQRVSVACLE----------RNESVLVSAHTSAGKTAVAEYAIAMAFRDK-QRVIYTSPLKALSNQKYRELHQEFK 144 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~----------~g~~vlv~apTGsGKTl~~~l~i~~~l~~~-~rvl~l~P~kaL~~Q~~~~l~~~~~ 144 (931)
.|+.-|.+++-... .+...++-..||.||.-...-.|+....+| +|.|+++.+-.|-....++|+....
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~ 116 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGA 116 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCC
Confidence 37899999985441 235688999999999987655566665555 5699999999999999999998876
Q ss_pred C---eEEE----ecccccCCCCCeeEecHHHHHHHHhcC---cccc---------CcccEEEEeccccCCCCCch-----
Q 002357 145 D---VGLM----TGDVTLSPNASCLVMTTEILRGMLYRG---SEVL---------KEVAWVIFDEIHYMKDRERG----- 200 (931)
Q Consensus 145 ~---vg~~----tGd~~~~~~~~IlV~Tpe~L~~~l~~~---~~~l---------~~l~~vViDEaH~l~~~~~g----- 200 (931)
. +-.+ .|+. ..-...|+++|+..|...-..+ ...+ .-=++|||||||.+.+..-+
T Consensus 117 ~~i~v~~l~~~~~~~~-~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~s 195 (303)
T PF13872_consen 117 DNIPVHPLNKFKYGDI-IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPS 195 (303)
T ss_pred CcccceechhhccCcC-CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCcccc
Confidence 2 1111 1221 2235579999999988764321 1111 11258999999999875432
Q ss_pred ---HHHHHHHHhcCCCceEEEeccCCC
Q 002357 201 ---VVWEESIIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 201 ---~~~~~ii~~l~~~~q~v~lSAT~~ 224 (931)
....++-..|| +.+++..|||-.
T Consensus 196 k~g~avl~LQ~~LP-~ARvvY~SATga 221 (303)
T PF13872_consen 196 KTGIAVLELQNRLP-NARVVYASATGA 221 (303)
T ss_pred HHHHHHHHHHHhCC-CCcEEEeccccc
Confidence 22223333454 567999999964
No 176
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.12 E-value=0.00035 Score=83.48 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=86.6
Q ss_pred ccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC----Ce
Q 002357 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----DV 146 (931)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~----~v 146 (931)
...++.++++|.-. .+.-+..-+.-..||=|||+++.+|+...--.|..|.+++..--|+.--.......+. .|
T Consensus 75 Rvlg~~~~dVQliG--~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsv 152 (822)
T COG0653 75 RVLGMRHFDVQLLG--GIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSV 152 (822)
T ss_pred HhcCCChhhHHHhh--hhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCce
Confidence 34566666777554 4444445688899999999999999888777888888888888898876666666554 67
Q ss_pred EEEecccccCC-----CCCeeEecHHHH-----H-HHHhcCc-cccCcccEEEEeccccCC
Q 002357 147 GLMTGDVTLSP-----NASCLVMTTEIL-----R-GMLYRGS-EVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 147 g~~tGd~~~~~-----~~~IlV~Tpe~L-----~-~~l~~~~-~~l~~l~~vViDEaH~l~ 195 (931)
|+...+.+... .+||..+|-..| + +|.+... ...+.+.+.|+||++-++
T Consensus 153 G~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 153 GVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred eeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 77766664322 589999998543 2 2333322 235568899999999664
No 177
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.02 E-value=0.00072 Score=82.63 Aligned_cols=86 Identities=8% Similarity=-0.033 Sum_probs=61.7
Q ss_pred CCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCCCh----HHHHHHH
Q 002357 158 NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNA----TQFAEWI 233 (931)
Q Consensus 158 ~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n~----~e~~~~l 233 (931)
...|++.||.+|.+-+..+...+..+..+||||||++.+..-..-+-++...-++..-+.+|||.+... ..+.+.+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~vm 86 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETKM 86 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHHH
Confidence 357999999999988888888899999999999999975543333444555556777899999999643 2344444
Q ss_pred HhhcCCCeEE
Q 002357 234 CHLHKQPCHV 243 (931)
Q Consensus 234 ~~~~~~~~~v 243 (931)
..+.-..+++
T Consensus 87 k~L~i~~v~l 96 (814)
T TIGR00596 87 RNLFLRHVYL 96 (814)
T ss_pred HHhCcCeEEE
Confidence 4443333333
No 178
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.00 E-value=2e-05 Score=88.62 Aligned_cols=93 Identities=14% Similarity=0.171 Sum_probs=68.8
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHH--HhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMA--FRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILR 170 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~--l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~ 170 (931)
-++|.+..|||||+++...+... ...+.+++|+++..+|.+..++.+.... ........+..+..+.
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~-----------~~~~~~~~~~~~~~~i 71 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKY-----------NPKLKKSDFRKPTSFI 71 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhc-----------ccchhhhhhhhhHHHH
Confidence 57899999999999987666665 5678999999999999999888887654 1112233455555555
Q ss_pred HHHhcCccccCcccEEEEeccccCCC
Q 002357 171 GMLYRGSEVLKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 171 ~~l~~~~~~l~~l~~vViDEaH~l~~ 196 (931)
+...........+++||+||||++.+
T Consensus 72 ~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 72 NNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhcccccccCCcCCEEEEehhHhhhh
Confidence 44432223466899999999999987
No 179
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.94 E-value=2.2e-05 Score=88.91 Aligned_cols=70 Identities=19% Similarity=0.285 Sum_probs=60.2
Q ss_pred ccCCCCCCHHHHHHHHHHhcC-CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHH
Q 002357 71 KTYSFELDPFQRVSVACLERN-ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELH 140 (931)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~g-~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~ 140 (931)
..+++.+++-|++|+...... .-.++.+|+|+|||..-...|.+++..+.+||+++||.+-+..+.+++.
T Consensus 180 ~~~~~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 180 TFFNKNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccCCccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 345666999999999988766 4567899999999999888899999999999999999998888887644
No 180
>PRK10536 hypothetical protein; Provisional
Probab=97.84 E-value=0.00014 Score=76.04 Aligned_cols=133 Identities=17% Similarity=0.195 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC--CCEEEEEcCchhhHHH-------HHHHHHHhcC---
Q 002357 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSNQ-------KYRELHQEFK--- 144 (931)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~--~~rvl~l~P~kaL~~Q-------~~~~l~~~~~--- 144 (931)
.+..|...+.++.++..+++.+|+|+|||+.+.......+.+ -.+++++-|+...... ..+.+.-++.
T Consensus 60 ~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~ 139 (262)
T PRK10536 60 RNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVY 139 (262)
T ss_pred CCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHH
Confidence 689999999999988999999999999999887766655533 3567777777654321 1111111111
Q ss_pred -CeEEEeccccc----C-CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEE
Q 002357 145 -DVGLMTGDVTL----S-PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVF 218 (931)
Q Consensus 145 -~vg~~tGd~~~----~-~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~ 218 (931)
....+.|...+ . ....|-|....-+ ++.. + +-++||+|||+.+. -.....++..++.+.++|+
T Consensus 140 D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ym-----RGrt-l-~~~~vIvDEaqn~~----~~~~k~~ltR~g~~sk~v~ 208 (262)
T PRK10536 140 DVLVRRLGASFMQYCLRPEIGKVEIAPFAYM-----RGRT-F-ENAVVILDEAQNVT----AAQMKMFLTRLGENVTVIV 208 (262)
T ss_pred HHHHHHhChHHHHHHHHhccCcEEEecHHHh-----cCCc-c-cCCEEEEechhcCC----HHHHHHHHhhcCCCCEEEE
Confidence 11111111111 0 1223444443322 2332 2 34899999999886 3556777788888888777
Q ss_pred ec
Q 002357 219 LS 220 (931)
Q Consensus 219 lS 220 (931)
..
T Consensus 209 ~G 210 (262)
T PRK10536 209 NG 210 (262)
T ss_pred eC
Confidence 54
No 181
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.83 E-value=0.00018 Score=87.94 Aligned_cols=128 Identities=17% Similarity=0.101 Sum_probs=85.2
Q ss_pred hccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHH-hCC--CEEEEEcCchhhHHHHHHHHHHhcCCe
Q 002357 70 AKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF-RDK--QRVIYTSPLKALSNQKYRELHQEFKDV 146 (931)
Q Consensus 70 ~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l-~~~--~rvl~l~P~kaL~~Q~~~~l~~~~~~v 146 (931)
....++.+++-|++|+..+..++-+++.++.|+|||.+.- +++..+ ..+ .++++++||---+....+. .+
T Consensus 317 ~~~~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~-~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~----~g-- 389 (720)
T TIGR01448 317 EKKLRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITR-AIIELAEELGGLLPVGLAAPTGRAAKRLGEV----TG-- 389 (720)
T ss_pred HHhcCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHH-HHHHHHHHcCCCceEEEEeCchHHHHHHHHh----cC--
Confidence 3456788999999999999888899999999999998753 333333 334 6899999997776643322 21
Q ss_pred EEEecccccCCCCCeeEecHHHHHHHHhcC-----ccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEecc
Q 002357 147 GLMTGDVTLSPNASCLVMTTEILRGMLYRG-----SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSA 221 (931)
Q Consensus 147 g~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~-----~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSA 221 (931)
. -..|..++....... .......++||+||++++. ...+..++..++...++|++.=
T Consensus 390 -----~---------~a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~~~~~rlilvGD 451 (720)
T TIGR01448 390 -----L---------TASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAALPDHARLLLVGD 451 (720)
T ss_pred -----C---------ccccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHhCCCCCEEEEECc
Confidence 0 012333332211100 0112357899999999986 3456677777888888888764
Q ss_pred C
Q 002357 222 T 222 (931)
Q Consensus 222 T 222 (931)
+
T Consensus 452 ~ 452 (720)
T TIGR01448 452 T 452 (720)
T ss_pred c
Confidence 3
No 182
>PF13245 AAA_19: Part of AAA domain
Probab=97.75 E-value=8.9e-05 Score=62.97 Aligned_cols=56 Identities=23% Similarity=0.305 Sum_probs=42.4
Q ss_pred HHH-HHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC----CCEEEEEcCchhhHHHHHHHH
Q 002357 84 SVA-CLERNESVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYTSPLKALSNQKYREL 139 (931)
Q Consensus 84 ai~-~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~----~~rvl~l~P~kaL~~Q~~~~l 139 (931)
|+. ++..+.-++|.||.|||||....-.+...+.. +.++++++|++..+++..+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 444 44423445569999999997766666666544 889999999999999988888
No 183
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.0016 Score=72.61 Aligned_cols=129 Identities=18% Similarity=0.213 Sum_probs=87.1
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCC-CCCcH--HHHHHHHHHHH--------h-----------------------CCC
Q 002357 75 FELDPFQRVSVACLERNESVLVSAHT-SAGKT--AVAEYAIAMAF--------R-----------------------DKQ 120 (931)
Q Consensus 75 f~l~~~Q~~ai~~l~~g~~vlv~apT-GsGKT--l~~~l~i~~~l--------~-----------------------~~~ 120 (931)
-++++.|.+.+..+.+.++++..-.| +.|+- -+|.+-++..+ . ..+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 35899999999999999998753222 44553 34545444433 0 124
Q ss_pred EEEEEcCchhhHHHHHHHHHHh-cCC------e-------EEEecccccC------------------------------
Q 002357 121 RVIYTSPLKALSNQKYRELHQE-FKD------V-------GLMTGDVTLS------------------------------ 156 (931)
Q Consensus 121 rvl~l~P~kaL~~Q~~~~l~~~-~~~------v-------g~~tGd~~~~------------------------------ 156 (931)
+|||++|+|+-|-.+...+..+ +|. | |-..|+....
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 8999999999999999888887 441 1 1122211100
Q ss_pred ---------CCCCeeEecHHHHHHHHhc------CccccCcccEEEEeccccCCCCCchHHHHHHH
Q 002357 157 ---------PNASCLVMTTEILRGMLYR------GSEVLKEVAWVIFDEIHYMKDRERGVVWEESI 207 (931)
Q Consensus 157 ---------~~~~IlV~Tpe~L~~~l~~------~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii 207 (931)
..++|+||+|=-|+..+.. ....++.+.++|+|-+|-+. -..|+.++
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l----~QNwEhl~ 436 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML----MQNWEHLL 436 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH----HhhHHHHH
Confidence 0479999999888877752 23568899999999999887 34566554
No 184
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.73 E-value=0.00088 Score=75.73 Aligned_cols=133 Identities=18% Similarity=0.231 Sum_probs=80.6
Q ss_pred EcCCCCCcHHHHHHHHHHHHhCC-CEEEEEcCchhhHHHHHHHHHHh------cCCeEEEecccc-----------cCCC
Q 002357 97 SAHTSAGKTAVAEYAIAMAFRDK-QRVIYTSPLKALSNQKYRELHQE------FKDVGLMTGDVT-----------LSPN 158 (931)
Q Consensus 97 ~apTGsGKTl~~~l~i~~~l~~~-~rvl~l~P~kaL~~Q~~~~l~~~------~~~vg~~tGd~~-----------~~~~ 158 (931)
...||||||++..-.|+.....| +..|+.+..-....-....|-.- |.. .+..+|.. -+..
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e-~i~~~d~~i~ikkvn~fsehnd~ 81 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSE-NININDENIEIKKVNNFSEHNDA 81 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhh-hhhcCCceeeeeeecccCccCCc
Confidence 46899999999877788877776 45677666544444333322211 111 11122221 2446
Q ss_pred CCeeEecHHHHHHHHhcCcc------ccCcccEE-EEeccccCCCCC---------chHHHHHHHHh-c--CCCceEEEe
Q 002357 159 ASCLVMTTEILRGMLYRGSE------VLKEVAWV-IFDEIHYMKDRE---------RGVVWEESIIF-L--PPAIKMVFL 219 (931)
Q Consensus 159 ~~IlV~Tpe~L~~~l~~~~~------~l~~l~~v-ViDEaH~l~~~~---------~g~~~~~ii~~-l--~~~~q~v~l 219 (931)
..|+++|.+.|.+.+-+... .+.+..+| +-||+|++.... -...|+..+.. + ++.--++.+
T Consensus 82 iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~lef 161 (812)
T COG3421 82 IEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLLEF 161 (812)
T ss_pred eEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceeehh
Confidence 78999999999987765432 24445554 669999997432 23446665443 2 345668889
Q ss_pred ccCCCChHHHH
Q 002357 220 SATMSNATQFA 230 (931)
Q Consensus 220 SAT~~n~~e~~ 230 (931)
|||.+....+.
T Consensus 162 ~at~~k~k~v~ 172 (812)
T COG3421 162 SATIPKEKSVE 172 (812)
T ss_pred hhcCCccccHH
Confidence 99998544433
No 185
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.69 E-value=0.00034 Score=83.11 Aligned_cols=137 Identities=18% Similarity=0.218 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHH--HHHHHhC---CCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecc
Q 002357 78 DPFQRVSVACLERNESVLVSAHTSAGKTAVAEYA--IAMAFRD---KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGD 152 (931)
Q Consensus 78 ~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~--i~~~l~~---~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd 152 (931)
.++|+.|+.....+.-.+++++.|+|||.+.... .+....+ +.++++++||---+....+.+.........- .+
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~-~~ 225 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA-EA 225 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc-hh
Confidence 3799999999999999999999999999864332 2222222 2589999999887777766665543322210 00
Q ss_pred cccCCCCCeeEecHHHHHHHHhc------CccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEecc
Q 002357 153 VTLSPNASCLVMTTEILRGMLYR------GSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSA 221 (931)
Q Consensus 153 ~~~~~~~~IlV~Tpe~L~~~l~~------~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSA 221 (931)
......+-..|-.++...... .......+++||+||+-++. ...+..++..++.+.++|++.=
T Consensus 226 --~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~rlIlvGD 294 (586)
T TIGR01447 226 --LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNTKLILLGD 294 (586)
T ss_pred --hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCCEEEEECC
Confidence 001112223444444322110 01122368999999999886 4567778888999999998863
No 186
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.68 E-value=0.00035 Score=83.14 Aligned_cols=143 Identities=16% Similarity=0.186 Sum_probs=90.2
Q ss_pred ccCCCC--CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHH--HHHHHHh--CCCEEEEEcCchhhHHHHHHHHHHhcC
Q 002357 71 KTYSFE--LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEY--AIAMAFR--DKQRVIYTSPLKALSNQKYRELHQEFK 144 (931)
Q Consensus 71 ~~~~f~--l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l--~i~~~l~--~~~rvl~l~P~kaL~~Q~~~~l~~~~~ 144 (931)
..|++. ..++|+.|+.....+.-.++.+++|+|||.+... ..+.... ...++++++||---+....+.+.....
T Consensus 145 ~lf~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~ 224 (615)
T PRK10875 145 ALFGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALR 224 (615)
T ss_pred HhcCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh
Confidence 344443 3589999999888888999999999999986432 2222222 235789999998888877776654433
Q ss_pred CeEEEecccccCCCCCeeEecHHHHHHHHhcC------ccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEE
Q 002357 145 DVGLMTGDVTLSPNASCLVMTTEILRGMLYRG------SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVF 218 (931)
Q Consensus 145 ~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~------~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~ 218 (931)
..++. .+. ....+.-..|-.+|....... ....-.+++||+||+-++. -..+..++..++++.++|+
T Consensus 225 ~~~~~-~~~--~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~rlIl 297 (615)
T PRK10875 225 QLPLT-DEQ--KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHARVIF 297 (615)
T ss_pred ccccc-hhh--hhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCCEEEE
Confidence 32211 110 011112234444444321111 1122356899999999885 5566777888898899888
Q ss_pred ec
Q 002357 219 LS 220 (931)
Q Consensus 219 lS 220 (931)
+.
T Consensus 298 vG 299 (615)
T PRK10875 298 LG 299 (615)
T ss_pred ec
Confidence 75
No 187
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.58 E-value=0.00027 Score=84.62 Aligned_cols=142 Identities=16% Similarity=0.202 Sum_probs=98.6
Q ss_pred CCCHHHHHHHHHH----hcCCcEEEEcCCCCCcHHHH--HHHHHHHH-hCCCEEEEEcCchhhHHHHHHHHHHhcCCeEE
Q 002357 76 ELDPFQRVSVACL----ERNESVLVSAHTSAGKTAVA--EYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFKDVGL 148 (931)
Q Consensus 76 ~l~~~Q~~ai~~l----~~g~~vlv~apTGsGKTl~~--~l~i~~~l-~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~ 148 (931)
.|+.||+..++.+ .++-|.|++...|-|||+.- ++|-+.+- .+-+.=||++||-.+.| |--+|+.+++..-+
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLn-WEMElKRwcPglKI 693 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILN-WEMELKRWCPGLKI 693 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhh-hhHHHhhhCCcceE
Confidence 4789999999876 67789999999999999753 23322221 22356689999977666 67899999996555
Q ss_pred E--eccccc----------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceE
Q 002357 149 M--TGDVTL----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKM 216 (931)
Q Consensus 149 ~--tGd~~~----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~ 216 (931)
+ .|...- ....+|.|+++..+..-+.. ..-.++.|+|+||+|++.++ ....|..++..- .-|.
T Consensus 694 LTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A--FkrkrWqyLvLDEaqnIKnf-ksqrWQAllnfn--sqrR 768 (1958)
T KOG0391|consen 694 LTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA--FKRKRWQYLVLDEAQNIKNF-KSQRWQALLNFN--SQRR 768 (1958)
T ss_pred eeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH--HHhhccceeehhhhhhhcch-hHHHHHHHhccc--hhhe
Confidence 4 454431 11357788888766543321 22347899999999999876 467788765543 2456
Q ss_pred EEeccCC
Q 002357 217 VFLSATM 223 (931)
Q Consensus 217 v~lSAT~ 223 (931)
++|+.|+
T Consensus 769 LLLtgTP 775 (1958)
T KOG0391|consen 769 LLLTGTP 775 (1958)
T ss_pred eeecCCc
Confidence 7788885
No 188
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.55 E-value=0.0004 Score=82.00 Aligned_cols=74 Identities=23% Similarity=0.373 Sum_probs=55.9
Q ss_pred hhccCCCCCCHHHHHHHH----HHhcCCcEEEEcCCCCCcHHHH---HHHHHHHHh-----------C------------
Q 002357 69 MAKTYSFELDPFQRVSVA----CLERNESVLVSAHTSAGKTAVA---EYAIAMAFR-----------D------------ 118 (931)
Q Consensus 69 ~~~~~~f~l~~~Q~~ai~----~l~~g~~vlv~apTGsGKTl~~---~l~i~~~l~-----------~------------ 118 (931)
..-.|||+|++.|..-+. ++.+..+.++..|||+|||+.- .+|..+.++ .
T Consensus 14 v~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~ 93 (945)
T KOG1132|consen 14 VPVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSG 93 (945)
T ss_pred ceeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCC
Confidence 344799999999987754 5577889999999999999854 345444442 0
Q ss_pred ----------------CCEEEEEcCchhhHHHHHHHHHHh
Q 002357 119 ----------------KQRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 119 ----------------~~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
-.++.|-+-|..-..|+.++++..
T Consensus 94 g~~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT 133 (945)
T KOG1132|consen 94 GEKSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRT 133 (945)
T ss_pred CCchhhhcCccccccCCceEEEecchHHHHHHHHHHHhhc
Confidence 126788888888889999998875
No 189
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.53 E-value=0.00099 Score=81.86 Aligned_cols=124 Identities=15% Similarity=0.082 Sum_probs=80.3
Q ss_pred CCCCCCHHHHHHHHHHhc-CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEec
Q 002357 73 YSFELDPFQRVSVACLER-NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTG 151 (931)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~~-g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tG 151 (931)
.+|.|++-|++|+..+.. ++-+++.+++|+|||.+.-..+......+.++++++||---+.... +..+
T Consensus 349 ~~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~----~~~g------- 417 (744)
T TIGR02768 349 QHYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQ----AESG------- 417 (744)
T ss_pred ccCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHH----hccC-------
Confidence 457899999999998866 4667899999999998754333222345889999999966554432 2111
Q ss_pred ccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHh-cCCCceEEEec
Q 002357 152 DVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF-LPPAIKMVFLS 220 (931)
Q Consensus 152 d~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~-l~~~~q~v~lS 220 (931)
+--.|..++.....++...+...++||+||+-++.. ..+..++.. .+...++|++.
T Consensus 418 ---------~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~----~~~~~Ll~~~~~~~~kliLVG 474 (744)
T TIGR02768 418 ---------IESRTLASLEYAWANGRDLLSDKDVLVIDEAGMVGS----RQMARVLKEAEEAGAKVVLVG 474 (744)
T ss_pred ---------CceeeHHHHHhhhccCcccCCCCcEEEEECcccCCH----HHHHHHHHHHHhcCCEEEEEC
Confidence 111244444222223334466889999999999873 334555543 33567777765
No 190
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.52 E-value=0.00032 Score=69.86 Aligned_cols=119 Identities=22% Similarity=0.226 Sum_probs=73.0
Q ss_pred HcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHH
Q 002357 326 ERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPV 405 (931)
Q Consensus 326 ~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~ 405 (931)
+...+.++||++|.+..+.+...+...... .++.++..+ ..
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-------------------------------------~~~~v~~q~--~~ 46 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEE-------------------------------------KGIPVFVQG--SK 46 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E--------------------------------------ETSCEEEST--CC
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhccc-------------------------------------ccceeeecC--cc
Confidence 345578999999999999999988763211 123333332 55
Q ss_pred HHHHHHHHHhcCCceEEEecc--hhhcccCCCC--cEEEEecceecCCC-C---------------------CcccCHHH
Q 002357 406 IKELVELLFQEGLVKALFATE--TFAMGLNMPA--KTVVFTAVKKWDGD-S---------------------HRYIGSGE 459 (931)
Q Consensus 406 ~R~~v~~~F~~g~i~vLvaT~--~la~GIdip~--~~vVI~~~~~~d~~-~---------------------~~~~s~~~ 459 (931)
.+..+++.|+++.-.||+|+. .+++|||+|+ ++.||....+|... . ..+.....
T Consensus 47 ~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (167)
T PF13307_consen 47 SRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRK 126 (167)
T ss_dssp HHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHH
T ss_pred hHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHH
Confidence 778888999999999999999 9999999995 44444433334221 1 00112344
Q ss_pred HHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 460 YIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 460 y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
..|.+||+-|...| .|.++++ ++.
T Consensus 127 l~Qa~GR~iR~~~D-~g~i~ll-D~R 150 (167)
T PF13307_consen 127 LKQAIGRLIRSEDD-YGVIILL-DSR 150 (167)
T ss_dssp HHHHHHCC--STT--EEEEEEE-SGG
T ss_pred HhhhcCcceeccCC-cEEEEEE-cCc
Confidence 67999999998875 6755554 444
No 191
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.47 E-value=0.00087 Score=68.81 Aligned_cols=124 Identities=20% Similarity=0.234 Sum_probs=85.1
Q ss_pred CCCCCCHHHHHHHHHHhc---CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCe---
Q 002357 73 YSFELDPFQRVSVACLER---NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDV--- 146 (931)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~~---g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~v--- 146 (931)
.++-+++.|.+....+.+ |.|.+.+.-+|.|||.|..-.++..+.+|.+.+.+.=-++|..|.+..+...++.+
T Consensus 20 ~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~L~~~lg~l~~r 99 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKALLEQMRQMLRSRLGGLLNR 99 (229)
T ss_pred cCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHHHHHHHHHHHHHHHHHhCC
Confidence 456689999999988743 68999999999999999766666667777665444444599999999999887621
Q ss_pred EEEe----cccccC---------------CCCCeeEecHHHHHHHHhcC-------c-----------cccCcccEEEEe
Q 002357 147 GLMT----GDVTLS---------------PNASCLVMTTEILRGMLYRG-------S-----------EVLKEVAWVIFD 189 (931)
Q Consensus 147 g~~t----Gd~~~~---------------~~~~IlV~Tpe~L~~~l~~~-------~-----------~~l~~l~~vViD 189 (931)
.+.+ .+...+ ....|+++|||.+.++...+ . ..+++-.-=|+|
T Consensus 100 ~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilD 179 (229)
T PF12340_consen 100 RIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILD 179 (229)
T ss_pred eeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeE
Confidence 1111 111111 24679999999877643211 1 123344556999
Q ss_pred ccccCCC
Q 002357 190 EIHYMKD 196 (931)
Q Consensus 190 EaH~l~~ 196 (931)
|+|..+.
T Consensus 180 EsDe~L~ 186 (229)
T PF12340_consen 180 ESDEILS 186 (229)
T ss_pred CchhccC
Confidence 9998775
No 192
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.44 E-value=0.05 Score=64.68 Aligned_cols=132 Identities=16% Similarity=0.154 Sum_probs=78.3
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhC--CCEEEEEcCchhhHHHH---HHHHHHhc-----CC--eEEEeccc------
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSNQK---YRELHQEF-----KD--VGLMTGDV------ 153 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~--~~rvl~l~P~kaL~~Q~---~~~l~~~~-----~~--vg~~tGd~------ 153 (931)
-++=|...||+|||.||.-.|...-+. -.+.|+++|+.|.-.-+ .+...+.| .+ .-.++-+.
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~~ 154 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKFK 154 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHHh
Confidence 357789999999999998777765443 35899999999876543 33333334 32 22222211
Q ss_pred -ccCCCCCeeEecHHHHH------HHHhcCccccCc-----------c----cEEEEeccccCCCCCchHHHHHHHHhcC
Q 002357 154 -TLSPNASCLVMTTEILR------GMLYRGSEVLKE-----------V----AWVIFDEIHYMKDRERGVVWEESIIFLP 211 (931)
Q Consensus 154 -~~~~~~~IlV~Tpe~L~------~~l~~~~~~l~~-----------l----~~vViDEaH~l~~~~~g~~~~~ii~~l~ 211 (931)
..+..+.++++|...+. +|+...+....+ + -.||+||=|++... ...|..+ ..+.
T Consensus 155 ~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~--~k~~~~i-~~l~ 231 (985)
T COG3587 155 FKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD--DKTYGAI-KQLN 231 (985)
T ss_pred hccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc--hHHHHHH-HhhC
Confidence 22446778888886554 234332221111 1 27999999999742 2233322 2232
Q ss_pred CCceEEEeccCCCChH
Q 002357 212 PAIKMVFLSATMSNAT 227 (931)
Q Consensus 212 ~~~q~v~lSAT~~n~~ 227 (931)
..-++=+|||.++..
T Consensus 232 -pl~ilRfgATfkd~y 246 (985)
T COG3587 232 -PLLILRFGATFKDEY 246 (985)
T ss_pred -ceEEEEecccchhhh
Confidence 233677999987543
No 193
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.40 E-value=0.0015 Score=81.27 Aligned_cols=126 Identities=15% Similarity=0.094 Sum_probs=83.1
Q ss_pred cCCCCCCHHHHHHHHHHhcCC-cEEEEcCCCCCcHHHHHHHHHHHH-hCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEE
Q 002357 72 TYSFELDPFQRVSVACLERNE-SVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLM 149 (931)
Q Consensus 72 ~~~f~l~~~Q~~ai~~l~~g~-~vlv~apTGsGKTl~~~l~i~~~l-~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~ 149 (931)
..+|.|++-|++|+..+..+. -++|.++.|+|||.+. -++...+ ..|.+|+.++||---+... .+- .|+
T Consensus 342 ~~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~e~~G~~V~~~ApTGkAA~~L----~e~---tGi- 412 (988)
T PRK13889 342 ARGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWEAAGYEVRGAALSGIAAENL----EGG---SGI- 412 (988)
T ss_pred hcCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHHHHcCCeEEEecCcHHHHHHH----hhc---cCc-
Confidence 357889999999999887754 5689999999999873 3444444 3588999999996555433 221 111
Q ss_pred ecccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc-CCCceEEEeccC
Q 002357 150 TGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL-PPAIKMVFLSAT 222 (931)
Q Consensus 150 tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l-~~~~q~v~lSAT 222 (931)
--.|...|..-...+...+...++||+||+-++. ...+..++... +...++|++.=+
T Consensus 413 ------------~a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~~~garvVLVGD~ 470 (988)
T PRK13889 413 ------------ASRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAADAGAKVVLVGDP 470 (988)
T ss_pred ------------chhhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHHHHhhhhCCCEEEEECCH
Confidence 1124444432222334456678999999999886 34566666544 557788887644
No 194
>PRK06526 transposase; Provisional
Probab=97.39 E-value=0.0012 Score=70.32 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=63.9
Q ss_pred HHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEec
Q 002357 86 ACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMT 165 (931)
Q Consensus 86 ~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~T 165 (931)
+.+..+.++++.||+|+|||..+......+...|.+|+|+... .|.++..... . ..+
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~-~l~~~l~~~~----~------------------~~~ 149 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAA-QWVARLAAAH----H------------------AGR 149 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHH-HHHHHHHHHH----h------------------cCc
Confidence 4457788999999999999988766556666778888775543 4544432110 0 012
Q ss_pred HHHHHHHHhcCccccCcccEEEEeccccCCCCCch-HHHHHHHHhcCCCceEEEeccCC
Q 002357 166 TEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERG-VVWEESIIFLPPAIKMVFLSATM 223 (931)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g-~~~~~ii~~l~~~~q~v~lSAT~ 223 (931)
.... +. .+.+.+++|+||+|+....... ..+..++........+|+.|...
T Consensus 150 ~~~~---l~----~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 150 LQAE---LV----KLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred HHHH---HH----HhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 2211 11 1346799999999988532222 22334443322234577766665
No 195
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.36 E-value=0.00042 Score=65.81 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=58.8
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHh------CCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeE
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFR------DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLV 163 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~------~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV 163 (931)
++..++|.||+|+|||.+.......... +..-+.+.+|...-....+..+...++... .. -
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~--------~~-----~ 69 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPL--------KS-----R 69 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SS--------SS-----T
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccc--------cc-----c
Confidence 4567899999999999987665554432 233344445544434455555555443100 00 2
Q ss_pred ecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCC
Q 002357 164 MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATM 223 (931)
Q Consensus 164 ~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~ 223 (931)
.|+..+.+.+.+.-.. ....+||+||+|++. ....++.+........--+.+++|+
T Consensus 70 ~~~~~l~~~~~~~l~~-~~~~~lviDe~~~l~---~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 70 QTSDELRSLLIDALDR-RRVVLLVIDEADHLF---SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp S-HHHHHHHHHHHHHH-CTEEEEEEETTHHHH---THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred CCHHHHHHHHHHHHHh-cCCeEEEEeChHhcC---CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 3444444443322111 112789999999984 1555666655554333334444443
No 196
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.30 E-value=0.0021 Score=61.70 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=28.0
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCch
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLK 129 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~k 129 (931)
+..+++.||+|+|||..+..........+..++++....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~ 57 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASD 57 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhh
Confidence 678999999999999876555444444456666666543
No 197
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.22 E-value=0.0039 Score=78.16 Aligned_cols=126 Identities=14% Similarity=0.068 Sum_probs=83.8
Q ss_pred CCCCCCHHHHHHHHHHh-cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEec
Q 002357 73 YSFELDPFQRVSVACLE-RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTG 151 (931)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~-~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tG 151 (931)
.+|.|++-|.+|+..+. .++-++|.++.|+|||.+.-......-..|.+|+.++||---+... .+..+
T Consensus 378 ~~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L----~e~~G------- 446 (1102)
T PRK13826 378 RHARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGL----EKEAG------- 446 (1102)
T ss_pred cCCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHH----HHhhC-------
Confidence 36789999999999874 4566889999999999875443332235688999999996655443 32211
Q ss_pred ccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcC-CCceEEEeccC
Q 002357 152 DVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP-PAIKMVFLSAT 222 (931)
Q Consensus 152 d~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~-~~~q~v~lSAT 222 (931)
|--.|...+..-...+...+..-++||+||+.++. ...+..++...+ ...++|++.=+
T Consensus 447 ---------i~a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 447 ---------IQSRTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred ---------CCeeeHHHHHhhhccCccCCCCCcEEEEECcccCC----HHHHHHHHHHHHhcCCEEEEECCH
Confidence 11234444321112233456677899999999886 455667777665 56788887644
No 198
>PRK04296 thymidine kinase; Provisional
Probab=97.15 E-value=0.00078 Score=68.65 Aligned_cols=87 Identities=10% Similarity=0.130 Sum_probs=52.6
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCc---hhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHH
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL---KALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTE 167 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~---kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe 167 (931)
|.-.++.+|+|+|||..+.-.+.+....+.+++|+-|. +....++ ....| ... . .+.+..++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i-------~~~lg-----~~~--~-~~~~~~~~ 66 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKV-------VSRIG-----LSR--E-AIPVSSDT 66 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcE-------ecCCC-----Ccc--c-ceEeCChH
Confidence 34578999999999988776676676788999988663 2211111 11111 111 1 12234455
Q ss_pred HHHHHHhcCccccCcccEEEEeccccCC
Q 002357 168 ILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 168 ~L~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
.+...+.. .-.++++||+||+|.+.
T Consensus 67 ~~~~~~~~---~~~~~dvviIDEaq~l~ 91 (190)
T PRK04296 67 DIFELIEE---EGEKIDCVLIDEAQFLD 91 (190)
T ss_pred HHHHHHHh---hCCCCCEEEEEccccCC
Confidence 55444433 23468999999999874
No 199
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.14 E-value=0.0012 Score=62.73 Aligned_cols=93 Identities=18% Similarity=0.105 Sum_probs=51.9
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILR 170 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~ 170 (931)
+..+++.+|+|+|||..+...+......+..++++.+................. .......-+...+.+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 71 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVG----------GKKASGSGELRLRLAL 71 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhh----------ccCCCCCHHHHHHHHH
Confidence 568999999999999986544433323333688888886654443333200000 0001111122233333
Q ss_pred HHHhcCccccCcccEEEEeccccCCCCC
Q 002357 171 GMLYRGSEVLKEVAWVIFDEIHYMKDRE 198 (931)
Q Consensus 171 ~~l~~~~~~l~~l~~vViDEaH~l~~~~ 198 (931)
....... ..++++||++.+.+..
T Consensus 72 ~~~~~~~-----~~viiiDei~~~~~~~ 94 (148)
T smart00382 72 ALARKLK-----PDVLILDEITSLLDAE 94 (148)
T ss_pred HHHHhcC-----CCEEEEECCcccCCHH
Confidence 3333221 6899999999998654
No 200
>PRK08181 transposase; Validated
Probab=97.09 E-value=0.0081 Score=64.36 Aligned_cols=124 Identities=18% Similarity=0.231 Sum_probs=71.7
Q ss_pred CCHHHHHHHH----HHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecc
Q 002357 77 LDPFQRVSVA----CLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGD 152 (931)
Q Consensus 77 l~~~Q~~ai~----~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd 152 (931)
++..|..++. .+.+++++++.||+|+|||-.+......+...|.+|+|+. ...|.++.......
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-~~~L~~~l~~a~~~----------- 155 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-TTDLVQKLQVARRE----------- 155 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-HHHHHHHHHHHHhC-----------
Confidence 4567777763 3468899999999999999776544444556787887775 34565554322100
Q ss_pred cccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCch-HHHHHHHHhcCCCceEEEeccCCCChHHHHH
Q 002357 153 VTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERG-VVWEESIIFLPPAIKMVFLSATMSNATQFAE 231 (931)
Q Consensus 153 ~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g-~~~~~ii~~l~~~~q~v~lSAT~~n~~e~~~ 231 (931)
.+.+.+.. .+.+.+++||||+++....... ..+.+++........+|..|-. + +.+
T Consensus 156 -----------~~~~~~l~-------~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~-~----~~~ 212 (269)
T PRK08181 156 -----------LQLESAIA-------KLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ-P----FGE 212 (269)
T ss_pred -----------CcHHHHHH-------HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC-C----HHH
Confidence 12222222 2457889999999988643221 2233444332223344444433 3 345
Q ss_pred HHHh
Q 002357 232 WICH 235 (931)
Q Consensus 232 ~l~~ 235 (931)
|-..
T Consensus 213 w~~~ 216 (269)
T PRK08181 213 WNRV 216 (269)
T ss_pred HHHh
Confidence 6553
No 201
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.08 E-value=0.0036 Score=67.46 Aligned_cols=138 Identities=21% Similarity=0.260 Sum_probs=91.2
Q ss_pred hhhccCCCC-CCHHHHHHHHHHhcCC--cEEEEcCCCCCcHHHHHHHHHHHH---hCCCEEEEEcCchhhHHHHHHHHHH
Q 002357 68 EMAKTYSFE-LDPFQRVSVACLERNE--SVLVSAHTSAGKTAVAEYAIAMAF---RDKQRVIYTSPLKALSNQKYRELHQ 141 (931)
Q Consensus 68 ~~~~~~~f~-l~~~Q~~ai~~l~~g~--~vlv~apTGsGKTl~~~l~i~~~l---~~~~rvl~l~P~kaL~~Q~~~~l~~ 141 (931)
...+.||.. .+..|.-|++.++... =|.+.++.|||||+.|+.|.+... +...++|+.=|+..+-.
T Consensus 219 ~~~~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~-------- 290 (436)
T COG1875 219 EDQEVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGE-------- 290 (436)
T ss_pred CchhhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccc--------
Confidence 445678887 5778889999997654 466799999999998877665543 34578999999987653
Q ss_pred hcCCeEEEecccccC--C-------C----CCeeEecHHHHHHHHhcCccccC----------cccEEEEeccccCCCCC
Q 002357 142 EFKDVGLMTGDVTLS--P-------N----ASCLVMTTEILRGMLYRGSEVLK----------EVAWVIFDEIHYMKDRE 198 (931)
Q Consensus 142 ~~~~vg~~tGd~~~~--~-------~----~~IlV~Tpe~L~~~l~~~~~~l~----------~l~~vViDEaH~l~~~~ 198 (931)
++|.+-|...-. | + .+.-=++.+.+..++.++...+. .=.+||+|||+.+-
T Consensus 291 ---dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT--- 364 (436)
T COG1875 291 ---DIGFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT--- 364 (436)
T ss_pred ---ccCcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC---
Confidence 344444433210 0 0 01111235566666555432211 12689999999986
Q ss_pred chHHHHHHHHhcCCCceEEEec
Q 002357 199 RGVVWEESIIFLPPAIKMVFLS 220 (931)
Q Consensus 199 ~g~~~~~ii~~l~~~~q~v~lS 220 (931)
-..+..++.++....++|++.
T Consensus 365 -pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 365 -PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred -HHHHHHHHHhccCCCEEEEcC
Confidence 556778888898888888864
No 202
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.94 E-value=0.0033 Score=75.80 Aligned_cols=67 Identities=19% Similarity=0.198 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHhcC-CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHh
Q 002357 76 ELDPFQRVSVACLERN-ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~~g-~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
.+++.|..|+..+... ..++|.||+|+|||.+..-.+...+..+.+|++++||..-+++..+.+...
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 4899999999988765 678899999999998876667777788899999999999999999988765
No 203
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.89 E-value=0.0017 Score=71.68 Aligned_cols=114 Identities=19% Similarity=0.174 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCC----CEEEEEcCchhhHHHHHHHHHHhcCCeEEEecc
Q 002357 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK----QRVIYTSPLKALSNQKYRELHQEFKDVGLMTGD 152 (931)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~----~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd 152 (931)
|++-|.+++.. ...+++|.|..|||||.+...-++..+..+ .+++++++|++.++++..++...++..+...-+
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~~~ 78 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQESSD 78 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCCTT
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcccccccc
Confidence 57889999987 668899999999999999877777666543 689999999999999999988865421110000
Q ss_pred c-----ccCCCCCeeEecHHHHHHHHhcCc-ccc-CcccEEEEeccc
Q 002357 153 V-----TLSPNASCLVMTTEILRGMLYRGS-EVL-KEVAWVIFDEIH 192 (931)
Q Consensus 153 ~-----~~~~~~~IlV~Tpe~L~~~l~~~~-~~l-~~l~~vViDEaH 192 (931)
. .......+.|+|-..+...+.+.. ... -.-.+-|+|+..
T Consensus 79 ~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 79 NERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp -HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0 001134678999987765443221 111 123456666665
No 204
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=96.87 E-value=0.12 Score=60.55 Aligned_cols=128 Identities=16% Similarity=0.150 Sum_probs=81.5
Q ss_pred CCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHH
Q 002357 329 FQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKE 408 (931)
Q Consensus 329 ~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~ 408 (931)
+.++|||..+....+.+-..|.+....+.. .|...+.- .|... +...-..|..+...|+
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~------------------gdnG~~aq-kW~~n--~sy~rldG~t~a~~re 777 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKD------------------GDNGCPAQ-KWEKN--RSYLRLDGTTSAADRE 777 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCC------------------CCCCCchh-hhhhc--cceecccCCcccchHH
Confidence 457788888877777777777665444321 11111111 11110 1112346778889999
Q ss_pred HHHHHHhc--CCc-eEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 409 LVELLFQE--GLV-KALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 409 ~v~~~F~~--g~i-~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
+.+.+|.+ |.. -+|++|.....|||+=..+-++. ||. .+++.-=.|.+-|.-|.|+.....++-++-+.
T Consensus 778 kLinqfN~e~~lsWlfllstrag~lGinLIsanr~~i----fda----~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~ 849 (1387)
T KOG1016|consen 778 KLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCII----FDA----CWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDN 849 (1387)
T ss_pred HHHHhccCCCCceeeeeehhccccccceeeccceEEE----EEe----ecCccccchhhhhhhhhcCcCceeEEeehhhh
Confidence 99999985 443 57889999999999765553332 233 33444456889999999998877777776554
No 205
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.83 E-value=0.011 Score=71.63 Aligned_cols=147 Identities=14% Similarity=0.161 Sum_probs=102.2
Q ss_pred HHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccce
Q 002357 317 IFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIA 396 (931)
Q Consensus 317 ~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~ 396 (931)
+.-|++.|.. .+.+++||+.-.+..+-+-..|+-.|+. ..
T Consensus 1265 LAiLLqQLk~-eghRvLIfTQMtkmLDVLeqFLnyHgyl---------------------------------------Y~ 1304 (1958)
T KOG0391|consen 1265 LAILLQQLKS-EGHRVLIFTQMTKMLDVLEQFLNYHGYL---------------------------------------YV 1304 (1958)
T ss_pred HHHHHHHHHh-cCceEEehhHHHHHHHHHHHHHhhcceE---------------------------------------EE
Confidence 3344444443 6689999999888888888888765553 24
Q ss_pred eccCCCCHHHHHHHHHHHhcCC--ceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCC
Q 002357 397 VHHSGLLPVIKELVELLFQEGL--VKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDD 474 (931)
Q Consensus 397 ~~hg~l~~~~R~~v~~~F~~g~--i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~ 474 (931)
-+.|...-++|+...+.|+... ...|.+|...+.|||+-..+.|| .||. .+++..=.|.--|+.|.|+..
T Consensus 1305 RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVv----FYDs----DwNPtMDaQAQDrChRIGqtR 1376 (1958)
T KOG0391|consen 1305 RLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVV----FYDS----DWNPTMDAQAQDRCHRIGQTR 1376 (1958)
T ss_pred EecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEE----EecC----CCCchhhhHHHHHHHhhcCcc
Confidence 4678889999999999999653 35567999999999999999998 4554 444455556666666666666
Q ss_pred ceEEEEEeCCcc-CHHHHHhh----------hhccCCChHHHHHhhHH
Q 002357 475 RGICIIMVDEQM-EMNTLKDM----------VLEGQFTAEHVIKNSFH 511 (931)
Q Consensus 475 ~g~~ii~~~~~~-~~~~l~~l----------~~~~~~~~e~~l~~sf~ 511 (931)
..+++-++++.. +.+.+++. +.|.+++.+++-++...
T Consensus 1377 DVHIYRLISe~TIEeniLkkanqKr~L~evaiqggdfTt~ff~q~ti~ 1424 (1958)
T KOG0391|consen 1377 DVHIYRLISERTIEENILKKANQKRMLDEVAIQGGDFTTAFFKQRTIR 1424 (1958)
T ss_pred ceEEEEeeccchHHHHHHhhhhHHHHHHHHhhccCCccHHHHhhhhHH
Confidence 678888888763 44444433 33446666665554443
No 206
>PHA02533 17 large terminase protein; Provisional
Probab=96.71 E-value=0.0062 Score=71.67 Aligned_cols=141 Identities=11% Similarity=0.159 Sum_probs=90.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHH-HHHHHHH-hCCCEEEEEcCchhhHHHHHHHHHHhcCC-----
Q 002357 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAE-YAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFKD----- 145 (931)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~-l~i~~~l-~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~----- 145 (931)
.||+|+|+|+..+..+..++-.++..+=..|||.+.. +++..++ ..+..+++++|+..-+..+++.++..+..
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~ 135 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPDFL 135 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHh
Confidence 5799999999999887666667888899999998765 4544444 56779999999999999999888765431
Q ss_pred -eEEEec-c--cccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCC--CceEEEe
Q 002357 146 -VGLMTG-D--VTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPP--AIKMVFL 219 (931)
Q Consensus 146 -vg~~tG-d--~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~--~~q~v~l 219 (931)
.++... . .....++.|.+.|... +...=.+..++|+||+|.+.+. ...|..+.-.+.. ..+++..
T Consensus 136 ~~~i~~~~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~~--~e~~~ai~p~lasg~~~r~iii 206 (534)
T PHA02533 136 QPGIVEWNKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPNF--IDFWLAIQPVISSGRSSKIIIT 206 (534)
T ss_pred hcceeecCccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCCH--HHHHHHHHHHHHcCCCceEEEE
Confidence 122111 1 1123344454444320 0001124678999999988652 4566655544433 3456666
Q ss_pred ccC
Q 002357 220 SAT 222 (931)
Q Consensus 220 SAT 222 (931)
|++
T Consensus 207 STp 209 (534)
T PHA02533 207 STP 209 (534)
T ss_pred ECC
Confidence 655
No 207
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.55 E-value=0.0054 Score=69.27 Aligned_cols=107 Identities=21% Similarity=0.263 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHH------hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHH--HHHHHHhcCCeEE
Q 002357 77 LDPFQRVSVACL------ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQK--YRELHQEFKDVGL 148 (931)
Q Consensus 77 l~~~Q~~ai~~l------~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~--~~~l~~~~~~vg~ 148 (931)
|++-|+++++.+ ..+.+++|.++-|+|||.+.-..+......+..+++++||-.-|..+ -..+-..|+ +++
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~-i~~ 80 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFG-IPI 80 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcC-ccc
Confidence 678899998888 78899999999999999986444433334577899999996655543 122223332 111
Q ss_pred EecccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCC
Q 002357 149 MTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 149 ~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~ 196 (931)
-. +....+ .++.. ......++.++++|+||+-++..
T Consensus 81 ~~-----~~~~~~---~~~~~----~~~~~~l~~~~~lIiDEism~~~ 116 (364)
T PF05970_consen 81 NN-----NEKSQC---KISKN----SRLRERLRKADVLIIDEISMVSA 116 (364)
T ss_pred cc-----cccccc---ccccc----chhhhhhhhheeeecccccchhH
Confidence 00 011111 11111 11123477899999999998864
No 208
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.36 E-value=0.052 Score=57.28 Aligned_cols=115 Identities=14% Similarity=0.125 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHh-------c-CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEE
Q 002357 78 DPFQRVSVACLE-------R-NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLM 149 (931)
Q Consensus 78 ~~~Q~~ai~~l~-------~-g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~ 149 (931)
++.|..++..+. . ...+++.+++|+|||..+.-.+......+..|+|+. ...|. ..++..+..
T Consensus 78 ~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it-~~~l~----~~l~~~~~~---- 148 (244)
T PRK07952 78 CEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT-VADIM----SAMKDTFSN---- 148 (244)
T ss_pred CchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-HHHHH----HHHHHHHhh----
Confidence 345666665442 1 147899999999999876544444445677887773 33333 334333210
Q ss_pred ecccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchH-HHHHHHHh-cCCCceEEEec
Q 002357 150 TGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGV-VWEESIIF-LPPAIKMVFLS 220 (931)
Q Consensus 150 tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~-~~~~ii~~-l~~~~q~v~lS 220 (931)
. -.+.+.+.+. +.+++++||||++......+.. .+..++.. ......++..|
T Consensus 149 ---------~---~~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitS 202 (244)
T PRK07952 149 ---------S---ETSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLT 202 (244)
T ss_pred ---------c---cccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeC
Confidence 0 0133333322 4578999999999876443332 23334432 33344455544
No 209
>PRK08116 hypothetical protein; Validated
Probab=96.26 E-value=0.024 Score=60.97 Aligned_cols=60 Identities=18% Similarity=0.156 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHh-----------cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHH
Q 002357 76 ELDPFQRVSVACLE-----------RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKY 136 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~-----------~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~ 136 (931)
..++.|..++..+. .+..+++.|++|+|||..+..........+..++|+. ...|.+++.
T Consensus 88 ~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-~~~ll~~i~ 158 (268)
T PRK08116 88 LFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-FPQLLNRIK 158 (268)
T ss_pred cCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHHHH
Confidence 35666666654331 1234999999999999887543333445577777765 345555443
No 210
>PRK08727 hypothetical protein; Validated
Probab=96.26 E-value=0.022 Score=60.06 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=26.4
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
..+++.||+|+|||-.+..........+.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 45899999999999766544444556678888875
No 211
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.22 E-value=0.05 Score=57.14 Aligned_cols=49 Identities=10% Similarity=0.052 Sum_probs=31.8
Q ss_pred HHHHHHHHH----hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCc
Q 002357 80 FQRVSVACL----ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL 128 (931)
Q Consensus 80 ~Q~~ai~~l----~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~ 128 (931)
....++..+ ..+..+++.||+|+|||..+..........+..++|+...
T Consensus 27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 344444444 2346799999999999987654444444566677776543
No 212
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.20 E-value=0.016 Score=69.47 Aligned_cols=117 Identities=17% Similarity=0.143 Sum_probs=80.5
Q ss_pred CCCHHHHHHHHHH-hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCe---EE---
Q 002357 76 ELDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDV---GL--- 148 (931)
Q Consensus 76 ~l~~~Q~~ai~~l-~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~v---g~--- 148 (931)
.|+.-|++|+... ......++.+=+|+|||......|...+..|++||.++=|..-+..+.-.++...-.+ |-
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~k 748 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEEK 748 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCCccc
Confidence 3899999999765 4455678999999999998777776667889999999999988888887777654321 10
Q ss_pred E---------eccccc---------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCC
Q 002357 149 M---------TGDVTL---------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 149 ~---------tGd~~~---------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~ 196 (931)
+ +.+.+. -.+..|+.+|-=-+...++. .+.+++.|+|||-.+.-
T Consensus 749 ih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~----~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 749 IHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFV----NRQFDYCIIDEASQILL 810 (1100)
T ss_pred cchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhhh----ccccCEEEEcccccccc
Confidence 0 112211 12355666554323233322 45799999999998764
No 213
>PRK12377 putative replication protein; Provisional
Probab=96.17 E-value=0.06 Score=57.00 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=46.7
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILR 170 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~ 170 (931)
..++++.||+|+|||-.+..........+..|+|+ +..+|..+....+.. + .+...+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i-~~~~l~~~l~~~~~~---------~------------~~~~~~l 158 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV-TVPDVMSRLHESYDN---------G------------QSGEKFL 158 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE-EHHHHHHHHHHHHhc---------c------------chHHHHH
Confidence 36799999999999987644444444566666665 445666655443311 0 0111121
Q ss_pred HHHhcCccccCcccEEEEeccccCC
Q 002357 171 GMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 171 ~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
+ .+.+++++|+||++...
T Consensus 159 ~-------~l~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 159 Q-------ELCKVDLLVLDEIGIQR 176 (248)
T ss_pred H-------HhcCCCEEEEcCCCCCC
Confidence 1 25689999999997654
No 214
>PRK09183 transposase/IS protein; Provisional
Probab=96.14 E-value=0.073 Score=56.98 Aligned_cols=47 Identities=30% Similarity=0.300 Sum_probs=34.1
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHH
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQK 135 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~ 135 (931)
+.++.++++.||+|+|||..+......+...|.+|+|+.. ..|..+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~-~~l~~~l 145 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA-ADLLLQL 145 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH-HHHHHHH
Confidence 5788999999999999998765544444567788887753 3455443
No 215
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.09 E-value=0.046 Score=61.29 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=50.1
Q ss_pred hhccCCCC-CCHHHHHHHHH----HhcCCcEEEEcCCCCCcHHHHHHHHHHHH----hCCCEEEEEcCchhhHHHHHHHH
Q 002357 69 MAKTYSFE-LDPFQRVSVAC----LERNESVLVSAHTSAGKTAVAEYAIAMAF----RDKQRVIYTSPLKALSNQKYREL 139 (931)
Q Consensus 69 ~~~~~~f~-l~~~Q~~ai~~----l~~g~~vlv~apTGsGKTl~~~l~i~~~l----~~~~rvl~l~P~kaL~~Q~~~~l 139 (931)
+.--|||. .+|-|-+=+.. +..+.+.++..|+|+|||+.-+-.+.... ....+++|.+-|..=+.....++
T Consensus 8 l~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El 87 (755)
T KOG1131|consen 8 LLVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEEL 87 (755)
T ss_pred eeEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHH
Confidence 34457887 88988877644 46677899999999999987544333322 13468889888866555555555
Q ss_pred HHh
Q 002357 140 HQE 142 (931)
Q Consensus 140 ~~~ 142 (931)
+..
T Consensus 88 ~~l 90 (755)
T KOG1131|consen 88 KRL 90 (755)
T ss_pred HHH
Confidence 443
No 216
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.05 E-value=0.061 Score=72.77 Aligned_cols=65 Identities=14% Similarity=0.220 Sum_probs=49.1
Q ss_pred CCCCCCHHHHHHHHHHhcC--CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHH
Q 002357 73 YSFELDPFQRVSVACLERN--ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYR 137 (931)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~~g--~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~ 137 (931)
.+|.|++-|++|+..+... +-.+|.++.|+|||.+....+...-..|.+|+.++||---+.+..+
T Consensus 426 ~~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e 492 (1960)
T TIGR02760 426 SEFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQ 492 (1960)
T ss_pred ccCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence 3678999999999988654 5678999999999987543333333468899999999776555443
No 217
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.03 E-value=0.033 Score=58.85 Aligned_cols=38 Identities=16% Similarity=0.112 Sum_probs=27.2
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCc
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL 128 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~ 128 (931)
+.++++.||+|+|||-.+..........+.+++|+.-.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 36899999999999977654333444567788887553
No 218
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.01 E-value=0.017 Score=61.11 Aligned_cols=42 Identities=12% Similarity=0.172 Sum_probs=28.5
Q ss_pred ccCcccEEEEeccccCCCCCchHHHH---HHHHhcCCCceEEEeccCCC
Q 002357 179 VLKEVAWVIFDEIHYMKDRERGVVWE---ESIIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 179 ~l~~l~~vViDEaH~l~~~~~g~~~~---~ii~~l~~~~q~v~lSAT~~ 224 (931)
....+..+|+||||.|. ...|. .++...+.+.++++.+--++
T Consensus 126 ~~~~fKiiIlDEcdsmt----sdaq~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMT----SDAQAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCcceEEEEechhhhh----HHHHHHHHHHHhccccceEEEEEcCChh
Confidence 35567999999999997 33344 34444566777888765543
No 219
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.00 E-value=0.024 Score=65.19 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=64.2
Q ss_pred CCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHH-hCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEec
Q 002357 74 SFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTG 151 (931)
Q Consensus 74 ~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l-~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tG 151 (931)
++. |+.-|..|+.++++..--++++|+|+|||++..-.++... ..+.+||+++|..--+.|.++.+.+..-.|--+..
T Consensus 407 ~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgLKVvRl~a 486 (935)
T KOG1802|consen 407 NLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGLKVVRLCA 486 (935)
T ss_pred CchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCceEeeeeh
Confidence 444 8999999999999999999999999999998765555544 46789999999999999999999887655544443
No 220
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.00 E-value=0.012 Score=59.56 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=38.0
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHh
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
.++|.||+|+|||..+.--+...++.|.+++|++.. +-..+..+.+..+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC-CCHHHHHHHHHHc
Confidence 378999999999998876666677889999999764 5566666666554
No 221
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.00 E-value=0.041 Score=57.61 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=26.3
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l 125 (931)
.+.++++.||+|+|||..+..........+..++|+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i 72 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYL 72 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 456899999999999998765555554555566654
No 222
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.99 E-value=0.13 Score=58.13 Aligned_cols=126 Identities=13% Similarity=0.097 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCCCcHHHHH-HHHHHHHh---CCCEEE-EEc-CchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEe
Q 002357 91 NESVLVSAHTSAGKTAVAE-YAIAMAFR---DKQRVI-YTS-PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVM 164 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~-l~i~~~l~---~~~rvl-~l~-P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~ 164 (931)
+..+++.+|||+|||.+.. +|....+. .+.+|. +.+ +.+.-+.++.+.+.+..+ +-+ ..+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lg-vpv------------~~~~ 240 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMG-IPV------------KAIE 240 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCC-cce------------EeeC
Confidence 3568899999999998754 33322222 344543 333 334555544454444332 111 2233
Q ss_pred cHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHH---HHhcC-CCceEEEeccCCCChHHHHHHHHhh
Q 002357 165 TTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES---IIFLP-PAIKMVFLSATMSNATQFAEWICHL 236 (931)
Q Consensus 165 Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~i---i~~l~-~~~q~v~lSAT~~n~~e~~~~l~~~ 236 (931)
+++.+...+.+ +.+.++||+|++.+.... ...+.++ +.... +.-.++.+|||.. ..++.+.+..+
T Consensus 241 ~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~--~~~l~el~~~l~~~~~~~e~~LVlsat~~-~~~~~~~~~~~ 309 (388)
T PRK12723 241 SFKDLKEEITQ----SKDFDLVLVDTIGKSPKD--FMKLAEMKELLNACGRDAEFHLAVSSTTK-TSDVKEIFHQF 309 (388)
T ss_pred cHHHHHHHHHH----hCCCCEEEEcCCCCCccC--HHHHHHHHHHHHhcCCCCeEEEEEcCCCC-HHHHHHHHHHh
Confidence 55666554443 457899999999988632 2223333 33333 2346799999985 44445555544
No 223
>PRK06893 DNA replication initiation factor; Validated
Probab=95.99 E-value=0.027 Score=59.25 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=26.1
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcC
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P 127 (931)
..+++.||+|+|||-.+.........++.++.|+.-
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 357899999999998765444445556777777664
No 224
>PRK05642 DNA replication initiation factor; Validated
Probab=95.98 E-value=0.035 Score=58.59 Aligned_cols=94 Identities=13% Similarity=0.127 Sum_probs=53.2
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRG 171 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~ 171 (931)
..+++.||+|+|||-.+..........+.+++|+... .+... .+.+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~-~~~~~-------------------------------~~~~~~ 93 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA-ELLDR-------------------------------GPELLD 93 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH-HHHhh-------------------------------hHHHHH
Confidence 4688999999999976433322333457788887643 33321 011111
Q ss_pred HHhcCccccCcccEEEEeccccCCCCCc-hHHHHHHHHhcCCCceEEEeccCCC
Q 002357 172 MLYRGSEVLKEVAWVIFDEIHYMKDRER-GVVWEESIIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 172 ~l~~~~~~l~~l~~vViDEaH~l~~~~~-g~~~~~ii~~l~~~~q~v~lSAT~~ 224 (931)
.+.+.+++|+|++|.+..... ...+-.++..+...-..+++|+|.+
T Consensus 94 -------~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 94 -------NLEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred -------hhhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 144668999999998864321 2223344444443333455566543
No 225
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.92 E-value=0.19 Score=57.81 Aligned_cols=128 Identities=17% Similarity=0.168 Sum_probs=67.4
Q ss_pred CCcEEEEcCCCCCcHHHHH-HHHHHH-HhCCCEEEEEc-Cc-hhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecH
Q 002357 91 NESVLVSAHTSAGKTAVAE-YAIAMA-FRDKQRVIYTS-PL-KALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT 166 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~-l~i~~~-l~~~~rvl~l~-P~-kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp 166 (931)
++.+++.+|||+|||.... ++.... ...+.+|.++. -+ +.-+.++.+.+....+ + +-..+.++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~-v------------p~~~~~~~ 287 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMG-I------------PVEVVYDP 287 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhC-C------------ceEccCCH
Confidence 5678899999999997654 343333 34556665443 22 3223333333333221 1 11223456
Q ss_pred HHHHHHHhcCccccCcccEEEEeccccCCCCC-chHHHHHHHHhc-CCCceEEEeccCCCChHHHHHHHHhh
Q 002357 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMKDRE-RGVVWEESIIFL-PPAIKMVFLSATMSNATQFAEWICHL 236 (931)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~-~g~~~~~ii~~l-~~~~q~v~lSAT~~n~~e~~~~l~~~ 236 (931)
+.+...+.. +.+.++||+|-+-+..... .-..+..++... .+...++.+|||.. ..++.+.+..+
T Consensus 288 ~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~-~~~l~~~~~~f 354 (424)
T PRK05703 288 KELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK-YEDLKDIYKHF 354 (424)
T ss_pred HhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC-HHHHHHHHHHh
Confidence 666655543 3468999999997654321 112233333311 22344788999874 33444444433
No 226
>PRK06921 hypothetical protein; Provisional
Probab=95.91 E-value=0.07 Score=57.32 Aligned_cols=43 Identities=23% Similarity=0.245 Sum_probs=30.0
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHH-HhC-CCEEEEEcCchhhHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMA-FRD-KQRVIYTSPLKALSNQ 134 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~-l~~-~~rvl~l~P~kaL~~Q 134 (931)
.+.++++.|+||+|||..+. +|+.. ... +..|+|+.. ..+..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l~~~~g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANELMRKKGVPVLYFPF-VEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHHhhhcCceEEEEEH-HHHHHH
Confidence 46789999999999997764 44444 444 778888764 344444
No 227
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.88 E-value=0.04 Score=52.96 Aligned_cols=87 Identities=21% Similarity=0.193 Sum_probs=57.8
Q ss_pred cceeccCCCCHHHHHHHHHHHhcCC-ceEEEecchhhcccCCCCc---EEEEecceecCCCC------------------
Q 002357 394 GIAVHHSGLLPVIKELVELLFQEGL-VKALFATETFAMGLNMPAK---TVVFTAVKKWDGDS------------------ 451 (931)
Q Consensus 394 gi~~~hg~l~~~~R~~v~~~F~~g~-i~vLvaT~~la~GIdip~~---~vVI~~~~~~d~~~------------------ 451 (931)
+..++.-+....+...+++.|++.. -.||++|..+++|||+|+. .+||...+.-.+..
T Consensus 23 ~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~ 102 (141)
T smart00492 23 NLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRP 102 (141)
T ss_pred CCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCc
Confidence 3455666666667888999998654 3799999889999999974 35555433221210
Q ss_pred Cc----ccCHHHHHHhhhccCCCCCCCceEEEEE
Q 002357 452 HR----YIGSGEYIQMSGRAGRRGKDDRGICIIM 481 (931)
Q Consensus 452 ~~----~~s~~~y~Qr~GRaGR~G~~~~g~~ii~ 481 (931)
+. |.......|.+||+-|...| .|.++++
T Consensus 103 ~~~~~~~~a~~~l~Qa~GR~iR~~~D-~g~i~l~ 135 (141)
T smart00492 103 FDFVSLPDAMRTLAQCVGRLIRGAND-YGVVVIA 135 (141)
T ss_pred hhHHHHHHHHHHHHHHhCccccCcCc-eEEEEEE
Confidence 11 11235578999999998875 6755554
No 228
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.81 E-value=0.039 Score=67.07 Aligned_cols=84 Identities=18% Similarity=0.165 Sum_probs=66.3
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh----CCCEEEEEcCchhhHHHHHHHHHHhcCCeEEE
Q 002357 74 SFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR----DKQRVIYTSPLKALSNQKYRELHQEFKDVGLM 149 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~----~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~ 149 (931)
++.|++-|++|+.. ...+++|.|..|||||.+...-+...+. .+.++++++.++..++.+.+++....+
T Consensus 194 ~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg----- 266 (684)
T PRK11054 194 SSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG----- 266 (684)
T ss_pred CCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC-----
Confidence 46799999999863 3457899999999999987666555553 345899999999999999999887753
Q ss_pred ecccccCCCCCeeEecHHHHHHH
Q 002357 150 TGDVTLSPNASCLVMTTEILRGM 172 (931)
Q Consensus 150 tGd~~~~~~~~IlV~Tpe~L~~~ 172 (931)
...|.|.|...+...
T Consensus 267 --------~~~v~v~TFHSlal~ 281 (684)
T PRK11054 267 --------TEDITARTFHALALH 281 (684)
T ss_pred --------CCCcEEEeHHHHHHH
Confidence 146889999888643
No 229
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.80 E-value=0.24 Score=55.39 Aligned_cols=127 Identities=17% Similarity=0.162 Sum_probs=69.5
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcC--chhhHHHHHHHHHHhcCCeEEEecccccCCCCCee-EecHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP--LKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCL-VMTTEI 168 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P--~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~Il-V~Tpe~ 168 (931)
..+++.+|||+|||.............+.++.++.- .|.-+.++.+.+.+.. +.+++ +.+|..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~l--------------gipv~v~~d~~~ 307 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTI--------------GFEVIAVRDEAA 307 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhc--------------CCcEEecCCHHH
Confidence 567899999999998754433344456666654443 3322322223332221 13333 457777
Q ss_pred HHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEeccCCCChHHHHHHHHhh
Q 002357 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLSATMSNATQFAEWICHL 236 (931)
Q Consensus 169 L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~lSAT~~n~~e~~~~l~~~ 236 (931)
+...+..... -.+.++|++|-+=+.... ...+.++...+ .++.-++.+|||... .+..+++..+
T Consensus 308 L~~aL~~lk~-~~~~DvVLIDTaGRs~kd--~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~~F 374 (436)
T PRK11889 308 MTRALTYFKE-EARVDYILIDTAGKNYRA--SETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNF 374 (436)
T ss_pred HHHHHHHHHh-ccCCCEEEEeCccccCcC--HHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHHHh
Confidence 7766643221 125899999998765432 33344443332 333345669998643 3334555443
No 230
>PRK14974 cell division protein FtsY; Provisional
Probab=95.79 E-value=0.19 Score=55.67 Aligned_cols=121 Identities=11% Similarity=0.078 Sum_probs=64.4
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCc--h-hhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecH-H
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL--K-ALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT-E 167 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~--k-aL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp-e 167 (931)
.-+++.+++|+|||....-.+......+.+++++..- | +-..|+ +.+....+ +.+..+... +.| .
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL-~~~a~~lg-v~v~~~~~g---------~dp~~ 209 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQL-EEHAERLG-VKVIKHKYG---------ADPAA 209 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHH-HHHHHHcC-CceecccCC---------CCHHH
Confidence 3577899999999986543333334556777666532 3 334443 33333332 111111110 112 1
Q ss_pred HHHHHHhcCccccCcccEEEEeccccCCCC-CchHHHHHHHHhcCCCceEEEeccCCCC
Q 002357 168 ILRGMLYRGSEVLKEVAWVIFDEIHYMKDR-ERGVVWEESIIFLPPAIKMVFLSATMSN 225 (931)
Q Consensus 168 ~L~~~l~~~~~~l~~l~~vViDEaH~l~~~-~~g~~~~~ii~~l~~~~q~v~lSAT~~n 225 (931)
.+.+.+... ...+.++|++|.+.++... ..-..+..+...+.++..++.++||..+
T Consensus 210 v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 210 VAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred HHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch
Confidence 122222211 1235789999999988632 2222233344445667778889998754
No 231
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.72 E-value=0.047 Score=58.18 Aligned_cols=107 Identities=21% Similarity=0.229 Sum_probs=64.9
Q ss_pred cCCCC-CCHHHHHHHHHH-------hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhc
Q 002357 72 TYSFE-LDPFQRVSVACL-------ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEF 143 (931)
Q Consensus 72 ~~~f~-l~~~Q~~ai~~l-------~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~ 143 (931)
.|.|. ....++.++..+ .++.++++.||+|+|||..+.-........|.+|+| +++.+|+.+....+..
T Consensus 78 ~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f-~~~~el~~~Lk~~~~~-- 154 (254)
T COG1484 78 EFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLF-ITAPDLLSKLKAAFDE-- 154 (254)
T ss_pred cccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEE-EEHHHHHHHHHHHHhc--
Confidence 34555 344555555443 467899999999999998764444444444556555 5666787776655533
Q ss_pred CCeEEEecccccCCCCCeeEec-HHHHHHHHhcCccccCcccEEEEeccccCCCCCc-hHHHHHHHH
Q 002357 144 KDVGLMTGDVTLSPNASCLVMT-TEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRER-GVVWEESII 208 (931)
Q Consensus 144 ~~vg~~tGd~~~~~~~~IlV~T-pe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~-g~~~~~ii~ 208 (931)
.+ .+.|.+ .+.+++++||||+=+...... ...|..+|.
T Consensus 155 --------------------~~~~~~l~~-------~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~ 194 (254)
T COG1484 155 --------------------GRLEEKLLR-------ELKKVDLLIIDDIGYEPFSQEEADLLFQLIS 194 (254)
T ss_pred --------------------CchHHHHHH-------HhhcCCEEEEecccCccCCHHHHHHHHHHHH
Confidence 11 122322 255789999999988653321 233444443
No 232
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.70 E-value=0.033 Score=68.07 Aligned_cols=86 Identities=20% Similarity=0.183 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC----CCEEEEEcCchhhHHHHHHHHHHhcCCeEEEec
Q 002357 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTG 151 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~----~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tG 151 (931)
.|++-|++|+.. .+..++|.|..|||||.+...-+...+.. ..++++++.|+..++++.+++....+.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~------ 73 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGR------ 73 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCc------
Confidence 378999999875 34678999999999999987777777643 357999999999999999999887642
Q ss_pred ccccCCCCCeeEecHHHHHHHH
Q 002357 152 DVTLSPNASCLVMTTEILRGML 173 (931)
Q Consensus 152 d~~~~~~~~IlV~Tpe~L~~~l 173 (931)
.....+.|+|...+...+
T Consensus 74 ----~~~~~v~i~TfHS~~~~i 91 (672)
T PRK10919 74 ----KEARGLMISTFHTLGLDI 91 (672)
T ss_pred ----ccccCcEEEcHHHHHHHH
Confidence 012357899998886544
No 233
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.69 E-value=0.065 Score=61.42 Aligned_cols=121 Identities=17% Similarity=0.162 Sum_probs=57.6
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhC--CCEEEEEcCc-hhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPL-KALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~--~~rvl~l~P~-kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (931)
.++++.||+|+|||.+.-..+...... +..++++.-. ..-..+.+..+....... ... ..+ .+.+.
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~-----~~~-~~~-----~~~~~ 124 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGH-----PPP-SSG-----LSFDE 124 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCC-----CCC-CCC-----CCHHH
Confidence 679999999999999865554433222 3556666322 111122233332222110 000 000 12333
Q ss_pred HHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc---CC-CceEEEeccCC
Q 002357 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PP-AIKMVFLSATM 223 (931)
Q Consensus 169 L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~-~~q~v~lSAT~ 223 (931)
+...+......-...-+|||||+|++........+..++... +. ++-+|+.+.+.
T Consensus 125 ~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 125 LFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCc
Confidence 333332211111234689999999997322233455444432 22 34466665554
No 234
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.68 E-value=0.038 Score=54.17 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=31.6
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHH
Q 002357 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQ 134 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q 134 (931)
+++.||+|+|||..+...+......+.+++|+..-..+...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~ 42 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEEL 42 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHH
Confidence 68999999999998765555555678889998887665544
No 235
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.68 E-value=0.11 Score=57.49 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=32.7
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQK 135 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~ 135 (931)
.+.++++.||||+|||..+.-.+...+..+..|+|++- ..|..+.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~-~~l~~~l 226 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA-DELIEIL 226 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH-HHHHHHH
Confidence 46899999999999998765444455567888888654 4555544
No 236
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.084 Score=59.28 Aligned_cols=106 Identities=18% Similarity=0.193 Sum_probs=56.0
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCC--CEEEEE-cCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHH
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDK--QRVIYT-SPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTE 167 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~--~rvl~l-~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe 167 (931)
..|+++.|+||+|||.+.-+.+-+..... .-++|+ |..-.=..|++..+...++ +-+..-..+.+
T Consensus 42 p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~------------~~p~~g~~~~~ 109 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG------------KVPLTGDSSLE 109 (366)
T ss_pred CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC------------CCCCCCCchHH
Confidence 35799999999999998766655554332 213333 1111222344444444332 11222223333
Q ss_pred HHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc
Q 002357 168 ILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL 210 (931)
Q Consensus 168 ~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l 210 (931)
.+. .++..-......-+||+||++.+.+... ..+..++...
T Consensus 110 ~~~-~l~~~~~~~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~ 150 (366)
T COG1474 110 ILK-RLYDNLSKKGKTVIVILDEVDALVDKDG-EVLYSLLRAP 150 (366)
T ss_pred HHH-HHHHHHHhcCCeEEEEEcchhhhccccc-hHHHHHHhhc
Confidence 332 2222222234567899999999987653 5555555443
No 237
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.61 E-value=0.11 Score=56.01 Aligned_cols=107 Identities=15% Similarity=0.151 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHH----hcCC-cEEEEcCCCCCcHHHHHHHHHHHHhCC-CEEEEEcCchhhHHHHHHHHHHhcCCeEEEe
Q 002357 77 LDPFQRVSVACL----ERNE-SVLVSAHTSAGKTAVAEYAIAMAFRDK-QRVIYTSPLKALSNQKYRELHQEFKDVGLMT 150 (931)
Q Consensus 77 l~~~Q~~ai~~l----~~g~-~vlv~apTGsGKTl~~~l~i~~~l~~~-~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~t 150 (931)
+++.+.+++..+ ..+. .+++.||+|+|||..+... ...+..+ ..+.++.++..-..+....+...++ +
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l-~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG---~-- 97 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNL-LKRLDQERVVAAKLVNTRVDAEDLLRMVAADFG---L-- 97 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHH-HHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcC---C--
Confidence 456667777665 2333 6889999999999876543 3333322 2333334433333344444444332 1
Q ss_pred cccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCC
Q 002357 151 GDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 151 Gd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
+... .+ .......+...+.... .....-++|+||+|.+.
T Consensus 98 ---~~~~-~~-~~~~~~~l~~~l~~~~-~~~~~~vliiDe~~~l~ 136 (269)
T TIGR03015 98 ---ETEG-RD-KAALLRELEDFLIEQF-AAGKRALLVVDEAQNLT 136 (269)
T ss_pred ---CCCC-CC-HHHHHHHHHHHHHHHH-hCCCCeEEEEECcccCC
Confidence 0110 00 0111122332222111 12244689999999986
No 238
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.61 E-value=0.074 Score=69.27 Aligned_cols=126 Identities=13% Similarity=0.087 Sum_probs=79.3
Q ss_pred cCCCCCCHHHHHHHHHHhc--CCcEEEEcCCCCCcHHHHH--HHHHHHH--hCCCEEEEEcCchhhHHHHHHHHHHhcCC
Q 002357 72 TYSFELDPFQRVSVACLER--NESVLVSAHTSAGKTAVAE--YAIAMAF--RDKQRVIYTSPLKALSNQKYRELHQEFKD 145 (931)
Q Consensus 72 ~~~f~l~~~Q~~ai~~l~~--g~~vlv~apTGsGKTl~~~--l~i~~~l--~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~ 145 (931)
...+.|++-|++|+..+.. ++-++|++..|+|||.+.. +.++..+ ..+.+++.++||-.-+.... +.
T Consensus 831 ~~~~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~----e~--- 903 (1623)
T PRK14712 831 ELMEKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMR----SA--- 903 (1623)
T ss_pred hhhcccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHH----Hh---
Confidence 4456799999999998864 4678999999999998742 2233333 24678999999977665542 21
Q ss_pred eEEEecccccCCCCCeeEecHHHHHHHH----hcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCC-CceEEEec
Q 002357 146 VGLMTGDVTLSPNASCLVMTTEILRGML----YRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPP-AIKMVFLS 220 (931)
Q Consensus 146 vg~~tGd~~~~~~~~IlV~Tpe~L~~~l----~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~-~~q~v~lS 220 (931)
| |--.|..+|.... ..+......-++||+||+-++. ...+..++..++. ..++|++.
T Consensus 904 -G-------------i~A~TIasfL~~~~~~~~~~~~~~~~~~llIVDEASMV~----~~~m~~ll~~~~~~garvVLVG 965 (1623)
T PRK14712 904 -G-------------VDAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVG----NTDMARAYALIAAGGGRAVASG 965 (1623)
T ss_pred -C-------------chHhhHHHHhccccchhhcccCCCCCCcEEEEEcccccc----HHHHHHHHHhhhhCCCEEEEEc
Confidence 1 1112323222110 0111112346899999999887 3456666666664 57888876
Q ss_pred cC
Q 002357 221 AT 222 (931)
Q Consensus 221 AT 222 (931)
=+
T Consensus 966 D~ 967 (1623)
T PRK14712 966 DT 967 (1623)
T ss_pred ch
Confidence 54
No 239
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.60 E-value=0.067 Score=58.84 Aligned_cols=95 Identities=16% Similarity=0.195 Sum_probs=54.3
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRG 171 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~ 171 (931)
.+.|+.+|+|+|||.+|.+..-. .+..+.-++.+.+=+.++...+.+ -..
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~---~~~~f~~~sAv~~gvkdlr~i~e~---------------------------a~~ 98 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGT---TNAAFEALSAVTSGVKDLREIIEE---------------------------ARK 98 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHh---hCCceEEeccccccHHHHHHHHHH---------------------------HHH
Confidence 48999999999999987543322 244555555554444333222211 111
Q ss_pred HHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCCCh
Q 002357 172 MLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNA 226 (931)
Q Consensus 172 ~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n~ 226 (931)
+...+ +=-++++||+|+++... -+..+-++ .+-.+++..||-.|+
T Consensus 99 ~~~~g-----r~tiLflDEIHRfnK~Q----QD~lLp~v-E~G~iilIGATTENP 143 (436)
T COG2256 99 NRLLG-----RRTILFLDEIHRFNKAQ----QDALLPHV-ENGTIILIGATTENP 143 (436)
T ss_pred HHhcC-----CceEEEEehhhhcChhh----hhhhhhhh-cCCeEEEEeccCCCC
Confidence 22112 22478999999997431 12222222 355688999997665
No 240
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.59 E-value=0.17 Score=59.83 Aligned_cols=152 Identities=11% Similarity=0.154 Sum_probs=91.1
Q ss_pred CCCCCHHHHHHHHHH---hcCCcEEEEcCCCCCcHHHHHHHHHHHHh-CCCEEEEEcCchhhHHHHHHHHHHhcCCeE--
Q 002357 74 SFELDPFQRVSVACL---ERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQEFKDVG-- 147 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~l---~~g~~vlv~apTGsGKTl~~~l~i~~~l~-~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg-- 147 (931)
|.-++|.=.+=|+.+ -+.+-.++.+|=|-|||.+..+.+...+. .+.+++|++|...-+.+.++.++..+...+
T Consensus 167 p~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~ 246 (752)
T PHA03333 167 PEAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHK 246 (752)
T ss_pred cCCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhccc
Confidence 344666666666655 34466778899999999886655443333 689999999999999999888776654222
Q ss_pred -------E---Eecccc---c-C-CC-----CCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHH
Q 002357 148 -------L---MTGDVT---L-S-PN-----ASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESI 207 (931)
Q Consensus 148 -------~---~tGd~~---~-~-~~-----~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii 207 (931)
. ..|+.. + + +. ..|...+.. .+...-..++++|+|||+.+.+ ..|+.++
T Consensus 247 ~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~----~~l~aIl 315 (752)
T PHA03333 247 PWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNP----GALLSVL 315 (752)
T ss_pred cccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCH----HHHHHHH
Confidence 1 112110 0 0 00 122222211 1111113578999999999974 5666666
Q ss_pred HhcC-CCceEEEeccCCCChHHHHHHHHhhc
Q 002357 208 IFLP-PAIKMVFLSATMSNATQFAEWICHLH 237 (931)
Q Consensus 208 ~~l~-~~~q~v~lSAT~~n~~e~~~~l~~~~ 237 (931)
-.+. ...++++.|.+.. ...+..++..++
T Consensus 316 P~l~~~~~k~IiISS~~~-~~s~tS~L~nLk 345 (752)
T PHA03333 316 PLMAVKGTKQIHISSPVD-ADSWISRVGEVK 345 (752)
T ss_pred HHHccCCCceEEEeCCCC-cchHHHHhhhhc
Confidence 5554 5677788887752 333444444433
No 241
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.57 E-value=0.058 Score=60.31 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=19.6
Q ss_pred HhcCC--cEEEEcCCCCCcHHHHHHHHH
Q 002357 88 LERNE--SVLVSAHTSAGKTAVAEYAIA 113 (931)
Q Consensus 88 l~~g~--~vlv~apTGsGKTl~~~l~i~ 113 (931)
+..+. ++++.||+|+|||..+.....
T Consensus 31 ~~~~~~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 31 VDSPNLPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34555 799999999999988754433
No 242
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.48 E-value=0.056 Score=64.84 Aligned_cols=134 Identities=18% Similarity=0.162 Sum_probs=84.1
Q ss_pred CCCHHHHHHHHHH---h-c-CCcEEEEcCCCCCcHHHHHHHHHHHHhCC--CEEEEEcCchhhHHHHHHHHHHhcCCeEE
Q 002357 76 ELDPFQRVSVACL---E-R-NESVLVSAHTSAGKTAVAEYAIAMAFRDK--QRVIYTSPLKALSNQKYRELHQEFKDVGL 148 (931)
Q Consensus 76 ~l~~~Q~~ai~~l---~-~-g~~vlv~apTGsGKTl~~~l~i~~~l~~~--~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~ 148 (931)
..+.-|.+++..+ . . .+-+++.|.=|=|||.+.-+++..+.... .+++|++|+++=+...+.-..+-+...|.
T Consensus 211 ~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~ 290 (758)
T COG1444 211 CLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGY 290 (758)
T ss_pred hcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCC
Confidence 4567788776554 2 2 33688999999999999887775544444 49999999999888877665555443332
Q ss_pred E-------ecccccC--CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEe
Q 002357 149 M-------TGDVTLS--PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFL 219 (931)
Q Consensus 149 ~-------tGd~~~~--~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~l 219 (931)
- .|..... +...|=+-+|... ...-++||+|||=.+. -+.++.+ -...+.++|
T Consensus 291 ~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a----------~~~~DllvVDEAAaIp----lplL~~l----~~~~~rv~~ 352 (758)
T COG1444 291 KRKVAPDALGEIREVSGDGFRIEYVPPDDA----------QEEADLLVVDEAAAIP----LPLLHKL----LRRFPRVLF 352 (758)
T ss_pred ccccccccccceeeecCCceeEEeeCcchh----------cccCCEEEEehhhcCC----hHHHHHH----HhhcCceEE
Confidence 1 1111111 1223444555422 1127899999998775 2233333 334568999
Q ss_pred ccCCCChH
Q 002357 220 SATMSNAT 227 (931)
Q Consensus 220 SAT~~n~~ 227 (931)
|.|+...+
T Consensus 353 sTTIhGYE 360 (758)
T COG1444 353 STTIHGYE 360 (758)
T ss_pred Eeeecccc
Confidence 99996554
No 243
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.47 E-value=0.096 Score=63.36 Aligned_cols=93 Identities=20% Similarity=0.302 Sum_probs=46.7
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHh----C---CCEEEEEcCch-hhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEec
Q 002357 94 VLVSAHTSAGKTAVAEYAIAMAFR----D---KQRVIYTSPLK-ALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMT 165 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~----~---~~rvl~l~P~k-aL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~T 165 (931)
++|.|+||+|||++.-..+..... . ...++|+--.. .=..+.+..+...+. |.. +. --..+
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~------g~~---P~--~GlsS 852 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLF------NKK---PP--NALNS 852 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHc------CCC---CC--ccccH
Confidence 359999999999987665433211 1 24556663211 222334444433221 111 10 01122
Q ss_pred HHHHHHHHhcCccccCcccEEEEeccccCCCC
Q 002357 166 TEILRGMLYRGSEVLKEVAWVIFDEIHYMKDR 197 (931)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~ 197 (931)
-+.|..+.......-..+.+|||||+|++...
T Consensus 853 ~evLerLF~~L~k~~r~v~IIILDEID~L~kK 884 (1164)
T PTZ00112 853 FKILDRLFNQNKKDNRNVSILIIDEIDYLITK 884 (1164)
T ss_pred HHHHHHHHhhhhcccccceEEEeehHhhhCcc
Confidence 23333322221122345679999999999864
No 244
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=95.46 E-value=0.039 Score=68.20 Aligned_cols=131 Identities=21% Similarity=0.211 Sum_probs=89.0
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHH------------------hCCCEEEEEcCchhhHHHHHHHHHHhcCC---eE
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAF------------------RDKQRVIYTSPLKALSNQKYRELHQEFKD---VG 147 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l------------------~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~---vg 147 (931)
..|+.++++-..|.|||..-.......+ ...+-+||++|. ++..||+.++...... |-
T Consensus 372 ~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~ 450 (1394)
T KOG0298|consen 372 KHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVL 450 (1394)
T ss_pred cCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEE
Confidence 3467889999999999987544333222 112468999998 8999999999888763 33
Q ss_pred EEecccccC-------CCCCeeEecHHHHHHHHhcCc------------------cccCcccE--EEEeccccCCCCCch
Q 002357 148 LMTGDVTLS-------PNASCLVMTTEILRGMLYRGS------------------EVLKEVAW--VIFDEIHYMKDRERG 200 (931)
Q Consensus 148 ~~tGd~~~~-------~~~~IlV~Tpe~L~~~l~~~~------------------~~l~~l~~--vViDEaH~l~~~~~g 200 (931)
.+.|-...+ -++|||++|+.+|++-++... ..+-.+.| |++|||+++-.. .
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess--s 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS--S 528 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch--H
Confidence 344422211 268999999999998775431 11222333 799999988652 4
Q ss_pred HHHHHHHHhcCCCceEEEeccCC
Q 002357 201 VVWEESIIFLPPAIKMVFLSATM 223 (931)
Q Consensus 201 ~~~~~ii~~l~~~~q~v~lSAT~ 223 (931)
....+.+.+|+ .....+.|+||
T Consensus 529 S~~a~M~~rL~-~in~W~VTGTP 550 (1394)
T KOG0298|consen 529 SAAAEMVRRLH-AINRWCVTGTP 550 (1394)
T ss_pred HHHHHHHHHhh-hhceeeecCCc
Confidence 44555566665 56789999996
No 245
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.40 E-value=0.087 Score=54.91 Aligned_cols=100 Identities=19% Similarity=0.263 Sum_probs=58.4
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHH---hCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAF---RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEIL 169 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l---~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L 169 (931)
.+++.||+|+|||-. +.++...+ .++.+|+|+... +..+.....+.. ...+.+
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~~~~----------------------~~~~~~ 91 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSAE-EFIREFADALRD----------------------GEIEEF 91 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHHHHT----------------------TSHHHH
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecHH-HHHHHHHHHHHc----------------------ccchhh
Confidence 489999999999974 23444333 356788887654 444443333322 122333
Q ss_pred HHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHH----Hhc-CCCceEEEeccCCCCh
Q 002357 170 RGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESI----IFL-PPAIKMVFLSATMSNA 226 (931)
Q Consensus 170 ~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii----~~l-~~~~q~v~lSAT~~n~ 226 (931)
.+ .+...++++||.+|.+.+. ..|.+.+ ..+ ....++|+.|...|+.
T Consensus 92 ~~-------~~~~~DlL~iDDi~~l~~~---~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 92 KD-------RLRSADLLIIDDIQFLAGK---QRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp HH-------HHCTSSEEEEETGGGGTTH---HHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred hh-------hhhcCCEEEEecchhhcCc---hHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 22 2557899999999999753 2233322 222 3456787777676654
No 246
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.31 E-value=0.09 Score=58.84 Aligned_cols=116 Identities=20% Similarity=0.209 Sum_probs=63.7
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHH-HhCC-CEEEEEc-Cc-hhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEec
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMA-FRDK-QRVIYTS-PL-KALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMT 165 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~-l~~~-~rvl~l~-P~-kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~T 165 (931)
+|..+++.+|||+|||....-..... ...+ .+|.+++ -+ +.=+.++.+.+.+.++ + +-..+.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~g-v------------~~~~~~~ 202 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG-V------------PVHAVKD 202 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcC-C------------ceEecCC
Confidence 46789999999999998764433333 3334 3554443 22 2223444444444432 1 1122345
Q ss_pred HHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc----CCCceEEEeccCCCC
Q 002357 166 TEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL----PPAIKMVFLSATMSN 225 (931)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l----~~~~q~v~lSAT~~n 225 (931)
++.+...+.+ +.+.++|+||.+=+... ...+.+.+..+ ...-.++.+|||...
T Consensus 203 ~~~l~~~l~~----l~~~DlVLIDTaG~~~~---d~~l~e~La~L~~~~~~~~~lLVLsAts~~ 259 (374)
T PRK14722 203 GGDLQLALAE----LRNKHMVLIDTIGMSQR---DRTVSDQIAMLHGADTPVQRLLLLNATSHG 259 (374)
T ss_pred cccHHHHHHH----hcCCCEEEEcCCCCCcc---cHHHHHHHHHHhccCCCCeEEEEecCccCh
Confidence 5445444432 45679999999975532 22233333333 223458889999743
No 247
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.28 E-value=0.087 Score=61.44 Aligned_cols=103 Identities=17% Similarity=0.292 Sum_probs=57.5
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhC--CCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEIL 169 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~--~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L 169 (931)
..+++.||+|+|||..+.......... +.+++|+.. ..+.++....+... +.+.+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~-~~~~~~~~~~~~~~----------------------~~~~~ 205 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS-EKFTNDFVNALRNN----------------------TMEEF 205 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHcC----------------------cHHHH
Confidence 458999999999998764333333333 677888755 45555544444210 12333
Q ss_pred HHHHhcCccccCcccEEEEeccccCCCCCch-HHHHHHHHhc-CCCceEEEeccCCC
Q 002357 170 RGMLYRGSEVLKEVAWVIFDEIHYMKDRERG-VVWEESIIFL-PPAIKMVFLSATMS 224 (931)
Q Consensus 170 ~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g-~~~~~ii~~l-~~~~q~v~lSAT~~ 224 (931)
... +.+.+++|+||+|.+...... ..+-.++..+ ....++++.|...|
T Consensus 206 ~~~-------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p 255 (450)
T PRK00149 206 KEK-------YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPP 255 (450)
T ss_pred HHH-------HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCH
Confidence 322 346789999999998754211 1222233332 33455555544444
No 248
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.20 E-value=0.016 Score=57.53 Aligned_cols=118 Identities=16% Similarity=0.161 Sum_probs=57.3
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHhCC-CEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccc--------ccCCCCCeeEec
Q 002357 95 LVSAHTSAGKTAVAEYAIAMAFRDK-QRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDV--------TLSPNASCLVMT 165 (931)
Q Consensus 95 lv~apTGsGKTl~~~l~i~~~l~~~-~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~--------~~~~~~~IlV~T 165 (931)
++.|+=|-|||.+.-+++...+..+ .++++++|+.+=++..++.+.......+.-.... .......|-+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~ 80 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQIIKLRFNKQRIEFVA 80 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC--------------------------CCC--B--
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhccccccccccccccccccccccccceEEEEC
Confidence 5789999999998777766665554 5899999999988888776655544333221000 011245677777
Q ss_pred HHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCCChH
Q 002357 166 TEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNAT 227 (931)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n~~ 227 (931)
|+.+... -...+++|+|||=.+. -+.+. ..+. +...+.||.|+...+
T Consensus 81 Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~---~ll~-~~~~vv~stTi~GYE 127 (177)
T PF05127_consen 81 PDELLAE-------KPQADLLIVDEAAAIP----LPLLK---QLLR-RFPRVVFSTTIHGYE 127 (177)
T ss_dssp HHHHCCT-----------SCEEECTGGGS-----HHHHH---HHHC-CSSEEEEEEEBSSTT
T ss_pred CHHHHhC-------cCCCCEEEEechhcCC----HHHHH---HHHh-hCCEEEEEeeccccc
Confidence 7755311 2245899999998775 22222 2233 334667788886554
No 249
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.15 E-value=0.12 Score=59.39 Aligned_cols=75 Identities=19% Similarity=0.399 Sum_probs=46.3
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHH-hC--CCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAF-RD--KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l-~~--~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (931)
..+++.||+|+|||..+. ++...+ .. +.+++|+... .+.++....+... +.+.
T Consensus 137 n~l~l~G~~G~GKThL~~-ai~~~l~~~~~~~~v~yi~~~-~~~~~~~~~~~~~----------------------~~~~ 192 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH-AIGNEILENNPNAKVVYVSSE-KFTNDFVNALRNN----------------------KMEE 192 (405)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHhCCCCcEEEEEHH-HHHHHHHHHHHcC----------------------CHHH
Confidence 357899999999998763 444333 33 5788888543 4444433333210 2233
Q ss_pred HHHHHhcCccccCcccEEEEeccccCCCC
Q 002357 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDR 197 (931)
Q Consensus 169 L~~~l~~~~~~l~~l~~vViDEaH~l~~~ 197 (931)
+... +.+.+++||||+|.+...
T Consensus 193 ~~~~-------~~~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 193 FKEK-------YRSVDLLLIDDIQFLAGK 214 (405)
T ss_pred HHHH-------HHhCCEEEEehhhhhcCC
Confidence 3322 235789999999998754
No 250
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.11 E-value=0.089 Score=55.16 Aligned_cols=100 Identities=16% Similarity=0.145 Sum_probs=58.3
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhC-CCEEEEEcCchhhHHHHHHHHHHhcC---------CeEEEecccccCCCC
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSPLKALSNQKYRELHQEFK---------DVGLMTGDVTLSPNA 159 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~-~~rvl~l~P~kaL~~Q~~~~l~~~~~---------~vg~~tGd~~~~~~~ 159 (931)
.|..++|.+|+|+|||..+.--+...+.+ +.+++|++-. +-..+..+.++.+.- .+.++..........
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e-e~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~ 96 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE-EPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWS 96 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS-S-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-T
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec-CCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccccc
Confidence 45789999999999999887777777777 9999999843 445666666665432 122222222111100
Q ss_pred CeeEecHHHHHHHHhcCccccCcccEEEEeccccC
Q 002357 160 SCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYM 194 (931)
Q Consensus 160 ~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l 194 (931)
-..++.+...+...-... +.+.||+|-...+
T Consensus 97 ---~~~~~~l~~~i~~~i~~~-~~~~vVIDsls~l 127 (226)
T PF06745_consen 97 ---PNDLEELLSKIREAIEEL-KPDRVVIDSLSAL 127 (226)
T ss_dssp ---SCCHHHHHHHHHHHHHHH-TSSEEEEETHHHH
T ss_pred ---ccCHHHHHHHHHHHHHhc-CCCEEEEECHHHH
Confidence 234444444332211111 2389999999877
No 251
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.08 E-value=0.048 Score=52.54 Aligned_cols=84 Identities=20% Similarity=0.245 Sum_probs=52.6
Q ss_pred eccCCCCHHHHHHHHHHHhcCCc---eEEEecch--hhcccCCCCc---EEEEecceecCCCC-------------C---
Q 002357 397 VHHSGLLPVIKELVELLFQEGLV---KALFATET--FAMGLNMPAK---TVVFTAVKKWDGDS-------------H--- 452 (931)
Q Consensus 397 ~~hg~l~~~~R~~v~~~F~~g~i---~vLvaT~~--la~GIdip~~---~vVI~~~~~~d~~~-------------~--- 452 (931)
++.-+..+.+...+++.|++..- .||+++.- +++|||+|+- .|||...+.-.+.. .
T Consensus 23 i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~ 102 (142)
T smart00491 23 VFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIR 102 (142)
T ss_pred EEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCC
Confidence 33333334455788888986543 69999988 9999999983 45555443221210 0
Q ss_pred ------cccCHHHHHHhhhccCCCCCCCceEEEEE
Q 002357 453 ------RYIGSGEYIQMSGRAGRRGKDDRGICIIM 481 (931)
Q Consensus 453 ------~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~ 481 (931)
.+.......|.+||+-|...| .|.++++
T Consensus 103 ~~~~~~~~~a~~~~~Qa~GR~iR~~~D-~g~i~l~ 136 (142)
T smart00491 103 PFDEVYLFDAMRALAQAIGRAIRHKND-YGVVVLL 136 (142)
T ss_pred cHHHHHHHHHHHHHHHHhCccccCccc-eEEEEEE
Confidence 011234578999999998865 6755554
No 252
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.00 E-value=0.093 Score=64.97 Aligned_cols=104 Identities=21% Similarity=0.140 Sum_probs=74.5
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC----CCEEEEEcCchhhHHHHHHHHHHhcCCeEEEec
Q 002357 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTG 151 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~----~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tG 151 (931)
.|+|-|++|+... ...++|.|..|||||.+...-+...+.. ..++|+++-|+..++++.+++.+..+.
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~------ 80 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGT------ 80 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhcc------
Confidence 4899999998743 4679999999999999987777766642 368999999999999999999887642
Q ss_pred ccccCCCCCeeEecHHHHHHHHhcCc-ccc-CcccEEEEeccc
Q 002357 152 DVTLSPNASCLVMTTEILRGMLYRGS-EVL-KEVAWVIFDEIH 192 (931)
Q Consensus 152 d~~~~~~~~IlV~Tpe~L~~~l~~~~-~~l-~~l~~vViDEaH 192 (931)
....+.|+|...+...+.+.. ..+ -.-.+-|+|+.+
T Consensus 81 -----~~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d 118 (721)
T PRK11773 81 -----SQGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDD 118 (721)
T ss_pred -----CCCCCEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHH
Confidence 113578999988765443321 100 012345777654
No 253
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.99 E-value=0.14 Score=61.65 Aligned_cols=150 Identities=18% Similarity=0.161 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhc-----CCcEEEEcCCCCCcHHHHHHHHHHHH---h------CCCEEEEEcCchhhHHHHHHHHHHhcC
Q 002357 79 PFQRVSVACLER-----NESVLVSAHTSAGKTAVAEYAIAMAF---R------DKQRVIYTSPLKALSNQKYRELHQEFK 144 (931)
Q Consensus 79 ~~Q~~ai~~l~~-----g~~vlv~apTGsGKTl~~~l~i~~~l---~------~~~rvl~l~P~kaL~~Q~~~~l~~~~~ 144 (931)
..|+..+..... -.-.+++-..|-|||+.....++..- . ..+..|+++|+ .+..||..++.+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~ 213 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTE 213 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCC
Confidence 455555544321 13578899999999987644433321 1 23457888888 888899999944443
Q ss_pred ----CeEEEec---ccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEE
Q 002357 145 ----DVGLMTG---DVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMV 217 (931)
Q Consensus 145 ----~vg~~tG---d~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v 217 (931)
.+-+.+| +...-..++|+++||.++.+ ....--.+-.||+||+|.+.+...- .....-.+ .....-
T Consensus 214 ~~~l~v~v~~gr~kd~~el~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~~tq--~~~a~~~L-~a~~RW 286 (674)
T KOG1001|consen 214 EDKLSIYVYHGRTKDKSELNSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNKDTQ--IFKAVCQL-DAKYRW 286 (674)
T ss_pred ccceEEEEecccccccchhcCCceEEeeHHHhhc----ccccceeEEEEEeccccccCCcchH--hhhhheee-ccceee
Confidence 3555666 11122357899999998874 1111123445899999999876433 11111111 234567
Q ss_pred EeccCCC--ChHHHHHHHHhh
Q 002357 218 FLSATMS--NATQFAEWICHL 236 (931)
Q Consensus 218 ~lSAT~~--n~~e~~~~l~~~ 236 (931)
.||+|+- +..++...++..
T Consensus 287 cLtgtPiqn~~~~lysl~~fl 307 (674)
T KOG1001|consen 287 CLTGTPIQNNLDELYSLFKFL 307 (674)
T ss_pred eecCChhhhhHHHHHHHHHHh
Confidence 8899873 223444444433
No 254
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.98 E-value=0.2 Score=66.38 Aligned_cols=128 Identities=13% Similarity=0.088 Sum_probs=79.7
Q ss_pred hccCCCCCCHHHHHHHHHHhcC--CcEEEEcCCCCCcHHHHHH--HHHHHH--hCCCEEEEEcCchhhHHHHHHHHHHhc
Q 002357 70 AKTYSFELDPFQRVSVACLERN--ESVLVSAHTSAGKTAVAEY--AIAMAF--RDKQRVIYTSPLKALSNQKYRELHQEF 143 (931)
Q Consensus 70 ~~~~~f~l~~~Q~~ai~~l~~g--~~vlv~apTGsGKTl~~~l--~i~~~l--~~~~rvl~l~P~kaL~~Q~~~~l~~~~ 143 (931)
.....+.|++.|++|+..+..+ +-++|.+..|+|||.+.-. .++..+ ..+.+|+.++||---+... .+.
T Consensus 961 ~~~~~~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L----~e~- 1035 (1747)
T PRK13709 961 PGELMEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEM----RSA- 1035 (1747)
T ss_pred HHHhcCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHH----Hhc-
Confidence 3345678999999999988664 5788999999999987432 222222 2356799999997766543 221
Q ss_pred CCeEEEecccccCCCCCeeEecHHHHHHHHh----cCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCC-CceEEE
Q 002357 144 KDVGLMTGDVTLSPNASCLVMTTEILRGMLY----RGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPP-AIKMVF 218 (931)
Q Consensus 144 ~~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~----~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~-~~q~v~ 218 (931)
|+ --.|..++..... .+......-++||+||+-++.. ..+..++..++. ..++|+
T Consensus 1036 ---Gi-------------~A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~~----~~m~~Ll~~~~~~garvVL 1095 (1747)
T PRK13709 1036 ---GV-------------DAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGN----TDMARAYALIAAGGGRAVS 1095 (1747)
T ss_pred ---Cc-------------chhhHHHHhcccccccccccCCCCCCcEEEEEccccccH----HHHHHHHHhhhcCCCEEEE
Confidence 11 1124343332110 1111123458999999998873 345666666664 678887
Q ss_pred eccC
Q 002357 219 LSAT 222 (931)
Q Consensus 219 lSAT 222 (931)
+.=+
T Consensus 1096 VGD~ 1099 (1747)
T PRK13709 1096 SGDT 1099 (1747)
T ss_pred ecch
Confidence 7644
No 255
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.93 E-value=0.38 Score=56.80 Aligned_cols=135 Identities=16% Similarity=0.273 Sum_probs=87.6
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHH--hCCCEEEEEcCchhhHHHHHHHHHHhcC------CeEEEeccccc-----CCC
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAF--RDKQRVIYTSPLKALSNQKYRELHQEFK------DVGLMTGDVTL-----SPN 158 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l--~~~~rvl~l~P~kaL~~Q~~~~l~~~~~------~vg~~tGd~~~-----~~~ 158 (931)
+-.++..|==.|||.+...-+...+ ..|.+++|++|.+.-++..++++...+. .+....|+ .+ +..
T Consensus 255 k~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-~I~i~f~nG~ 333 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-TISFSFPDGS 333 (738)
T ss_pred cceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-EEEEEecCCC
Confidence 5568889999999986553333333 4699999999999999999999887543 23334453 33 111
Q ss_pred -CCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc-CCCceEEEeccCCCChHHHHHHHHhh
Q 002357 159 -ASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL-PPAIKMVFLSATMSNATQFAEWICHL 236 (931)
Q Consensus 159 -~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l-~~~~q~v~lSAT~~n~~e~~~~l~~~ 236 (931)
..|.++|.. ..+...=..++++|+|||+.+.+ ..|..++-.+ ..+.++|++|-|-+.. .-..|+..+
T Consensus 334 kstI~FaSar------ntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~~~n~k~I~ISS~Ns~~-~sTSFL~nL 402 (738)
T PHA03368 334 RSTIVFASSH------NTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLNQTNCKIIFVSSTNTGK-ASTSFLYNL 402 (738)
T ss_pred ccEEEEEecc------CCCCccCCcccEEEEechhhCCH----HHHHHHHHHHhccCccEEEEecCCCCc-cchHHHHhh
Confidence 244444320 11112223789999999999984 4566666443 4588999999885422 234666655
Q ss_pred cC
Q 002357 237 HK 238 (931)
Q Consensus 237 ~~ 238 (931)
++
T Consensus 403 k~ 404 (738)
T PHA03368 403 KG 404 (738)
T ss_pred cC
Confidence 44
No 256
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.93 E-value=0.092 Score=65.03 Aligned_cols=104 Identities=19% Similarity=0.126 Sum_probs=74.7
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC----CCEEEEEcCchhhHHHHHHHHHHhcCCeEEEec
Q 002357 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTG 151 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~----~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tG 151 (931)
.|++-|++|+.. ....++|.|..|||||.+...-+...+.. ..++|+++.|+..++++.+++.+..+.
T Consensus 4 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~------ 75 (715)
T TIGR01075 4 GLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGT------ 75 (715)
T ss_pred ccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhcc------
Confidence 389999999865 34679999999999999987777776653 358999999999999999999887642
Q ss_pred ccccCCCCCeeEecHHHHHHHHhcCc-cccC-cccEEEEeccc
Q 002357 152 DVTLSPNASCLVMTTEILRGMLYRGS-EVLK-EVAWVIFDEIH 192 (931)
Q Consensus 152 d~~~~~~~~IlV~Tpe~L~~~l~~~~-~~l~-~l~~vViDEaH 192 (931)
....+.|+|...+...+.+.. ..+. .-.+-|+|+.+
T Consensus 76 -----~~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d 113 (715)
T TIGR01075 76 -----SARGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSDD 113 (715)
T ss_pred -----cccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHH
Confidence 113578999988765443321 1110 11345677664
No 257
>PRK05973 replicative DNA helicase; Provisional
Probab=94.88 E-value=0.18 Score=52.90 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=42.8
Q ss_pred HHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHh
Q 002357 86 ACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 86 ~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
.-+..|.-++|.|++|+|||..++-.+.....+|.+++|++---. ..|..+++...
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes-~~~i~~R~~s~ 114 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT-EQDVRDRLRAL 114 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHHc
Confidence 345677889999999999999877666666677889999975533 56667776655
No 258
>PHA00729 NTP-binding motif containing protein
Probab=94.79 E-value=0.24 Score=51.27 Aligned_cols=116 Identities=14% Similarity=0.106 Sum_probs=57.9
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRG 171 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~ 171 (931)
.++++.|++|+|||..+.- +...+. ..+ ..+..+.....+...+++.+.+.+..
T Consensus 18 ~nIlItG~pGvGKT~LA~a-La~~l~-------------------~~l------~~l~~~~~~~d~~~~~~fid~~~Ll~ 71 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALK-VARDVF-------------------WKL------NNLSTKDDAWQYVQNSYFFELPDALE 71 (226)
T ss_pred EEEEEECCCCCCHHHHHHH-HHHHHH-------------------hhc------ccccchhhHHhcCCcEEEEEHHHHHH
Confidence 4899999999999986632 222211 000 00011112223345677777777776
Q ss_pred HHhcCccccCcccEEEEecc--ccCCC-CCc--hHHHHHHHHhcCCCceEEEeccCCCChHHHHHHHHh
Q 002357 172 MLYRGSEVLKEVAWVIFDEI--HYMKD-RER--GVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICH 235 (931)
Q Consensus 172 ~l~~~~~~l~~l~~vViDEa--H~l~~-~~~--g~~~~~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~ 235 (931)
.+..........+++|+||+ |.+.. +.. -.++..+...+.+.++++.+... +..++...+..
T Consensus 72 ~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~l--s~edL~~~Lr~ 138 (226)
T PHA00729 72 KIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTP--SPEDLAFYLRE 138 (226)
T ss_pred HHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecC--CHHHHHHHHHh
Confidence 66432222234688999993 33211 000 01122333444445555555444 44555555543
No 259
>PRK04195 replication factor C large subunit; Provisional
Probab=94.78 E-value=0.14 Score=60.33 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCCcHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~ 109 (931)
.+.+++.||+|+|||..+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999998763
No 260
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.77 E-value=0.15 Score=59.08 Aligned_cols=103 Identities=11% Similarity=0.174 Sum_probs=58.8
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRG 171 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~ 171 (931)
..+++.||+|+|||-.+..........+.+++|+... .+.++....+.. .+.+.+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~-~f~~~~~~~l~~----------------------~~~~~f~~ 198 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE-LFTEHLVSAIRS----------------------GEMQRFRQ 198 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH-HHHHHHHHHHhc----------------------chHHHHHH
Confidence 3589999999999987643333333467888888753 455544333321 01233322
Q ss_pred HHhcCccccCcccEEEEeccccCCCCCc-hHHHHHHHHhc-CCCceEEEeccCCC
Q 002357 172 MLYRGSEVLKEVAWVIFDEIHYMKDRER-GVVWEESIIFL-PPAIKMVFLSATMS 224 (931)
Q Consensus 172 ~l~~~~~~l~~l~~vViDEaH~l~~~~~-g~~~~~ii~~l-~~~~q~v~lSAT~~ 224 (931)
. +...+++++||+|.+..... ...+..++..+ ....++|+.|-+.|
T Consensus 199 ~-------~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p 246 (445)
T PRK12422 199 F-------YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAP 246 (445)
T ss_pred H-------cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCH
Confidence 1 34688999999999875422 11222233222 24456666665544
No 261
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.75 E-value=0.11 Score=54.58 Aligned_cols=54 Identities=13% Similarity=0.192 Sum_probs=40.0
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHh
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
+..|..+++.+++|+|||..+...+...+.++.+++|++.. +-..|..+.+..+
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC-CCHHHHHHHHHHh
Confidence 35678899999999999998766666666788999999844 3445555555443
No 262
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.75 E-value=0.76 Score=49.32 Aligned_cols=128 Identities=16% Similarity=0.124 Sum_probs=71.3
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcC-c-h-hhHHHHHHHHHHhcCCeEEEecccccCCCCCeeE-ec
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP-L-K-ALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLV-MT 165 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P-~-k-aL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV-~T 165 (931)
.+..+.+.+++|+|||..+..........+.++.+++- + + +...|+...... . +.++.. .+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~----~-----------~~~~~~~~~ 138 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKT----I-----------GFEVIAVRD 138 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhh----c-----------CceEEecCC
Confidence 55789999999999999766544444445566655443 2 2 455554322221 1 122222 46
Q ss_pred HHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHH---hcCCCceEEEeccCCCChHHHHHHHHhh
Q 002357 166 TEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII---FLPPAIKMVFLSATMSNATQFAEWICHL 236 (931)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~---~l~~~~q~v~lSAT~~n~~e~~~~l~~~ 236 (931)
++.+...+..-. ...+.++||+|-+=+.... ...++++.. ...+..-++.+|||.. ..+..+++..+
T Consensus 139 ~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~--~~~l~el~~~~~~~~~~~~~LVl~a~~~-~~d~~~~~~~f 208 (270)
T PRK06731 139 EAAMTRALTYFK-EEARVDYILIDTAGKNYRA--SETVEEMIETMGQVEPDYICLTLSASMK-SKDMIEIITNF 208 (270)
T ss_pred HHHHHHHHHHHH-hcCCCCEEEEECCCCCcCC--HHHHHHHHHHHhhhCCCeEEEEEcCccC-HHHHHHHHHHh
Confidence 666665543211 1246899999999766422 334444433 3334445777999964 23344555543
No 263
>PF13173 AAA_14: AAA domain
Probab=94.67 E-value=0.17 Score=47.74 Aligned_cols=35 Identities=11% Similarity=0.303 Sum_probs=23.2
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
++.+++.||.|+|||......+.... ...+++|+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~ 36 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN 36 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec
Confidence 56789999999999987544433332 345555553
No 264
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.65 E-value=0.21 Score=67.76 Aligned_cols=123 Identities=20% Similarity=0.188 Sum_probs=77.0
Q ss_pred CCCCCHHHHHHHHHHhcC--CcEEEEcCCCCCcHHHHH---HHHHHHHh-CCCEEEEEcCchhhHHHHHHHHHHhcCCeE
Q 002357 74 SFELDPFQRVSVACLERN--ESVLVSAHTSAGKTAVAE---YAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQEFKDVG 147 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~g--~~vlv~apTGsGKTl~~~---l~i~~~l~-~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg 147 (931)
.+.|++.|++|+..+..+ +-++|.++.|+|||.+.. -++...+. .+.+|+.++||-.-+.+. ++. |
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L----~~~----g 1088 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGEL----KSA----G 1088 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHH----Hhc----C
Confidence 567999999999987544 567889999999998752 23344443 577899999996655544 221 1
Q ss_pred EEecccccCCCCCeeEecHHHHHHH--HhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc-CCCceEEEecc
Q 002357 148 LMTGDVTLSPNASCLVMTTEILRGM--LYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL-PPAIKMVFLSA 221 (931)
Q Consensus 148 ~~tGd~~~~~~~~IlV~Tpe~L~~~--l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l-~~~~q~v~lSA 221 (931)
+ -..|..++..- .++....+...++||+||+-++. ...+..++... ....++|++.=
T Consensus 1089 ~-------------~a~Ti~s~l~~~~~~~~~~~~~~~~v~ivDEasMv~----~~~~~~l~~~~~~~~ak~vlvGD 1148 (1960)
T TIGR02760 1089 V-------------QAQTLDSFLTDISLYRNSGGDFRNTLFILDESSMVS----NFQLTHATELVQKSGSRAVSLGD 1148 (1960)
T ss_pred C-------------chHhHHHHhcCcccccccCCCCcccEEEEEcccccc----HHHHHHHHHhccCCCCEEEEeCC
Confidence 1 01233333210 01111224467899999999887 34455666554 34577777653
No 265
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.65 E-value=0.45 Score=55.30 Aligned_cols=128 Identities=15% Similarity=0.167 Sum_probs=64.8
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHH-HhC-CCEEEEEc--CchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEe
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMA-FRD-KQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVM 164 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~-l~~-~~rvl~l~--P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~ 164 (931)
..|+.+.+.+|||+|||..+.-.+... ... +.+|.++. +.+.-+.++.+.+... .|+.. ..+.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~i---Lgv~v----------~~a~ 414 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQ---LGIAV----------HEAD 414 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcc---cCcee----------EecC
Confidence 457788899999999998754333322 222 34554443 2343333332222221 11100 1123
Q ss_pred cHHHHHHHHhcCccccCcccEEEEeccccCCCCCc-hHHHHHHHHhcCCCceEEEeccCCCChHHHHHHHHh
Q 002357 165 TTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRER-GVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICH 235 (931)
Q Consensus 165 Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~-g~~~~~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~ 235 (931)
+++.+...+.+ +.+.++||||.+=+...... ...+.. +........++.++++.. ..++.+.+..
T Consensus 415 d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~-L~aa~~~a~lLVLpAtss-~~Dl~eii~~ 480 (559)
T PRK12727 415 SAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNW-LRAARQVTSLLVLPANAH-FSDLDEVVRR 480 (559)
T ss_pred cHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHH-HHHhhcCCcEEEEECCCC-hhHHHHHHHH
Confidence 45556665543 45689999999976532211 111111 222223456788888863 3344444443
No 266
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=94.64 E-value=0.047 Score=59.02 Aligned_cols=106 Identities=23% Similarity=0.284 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCC--CEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccc
Q 002357 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK--QRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVT 154 (931)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~--~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~ 154 (931)
.++-|..=+.++.++.-++..+|-|+|||..+.-....++..+ .++|.+=|-.+ .+.+.|.+-||.+
T Consensus 129 kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRPaVE-----------AGEklGfLPGdl~ 197 (348)
T COG1702 129 KTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRPAVE-----------AGEKLGFLPGDLR 197 (348)
T ss_pred cChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCcchh-----------cCcccCcCCCchh
Confidence 6899999999999999999999999999998887777777665 57888888322 2336777778775
Q ss_pred cCCC------CCe--eEecHHHHHHHHhcCccccC----------cccEEEEecccc
Q 002357 155 LSPN------ASC--LVMTTEILRGMLYRGSEVLK----------EVAWVIFDEIHY 193 (931)
Q Consensus 155 ~~~~------~~I--lV~Tpe~L~~~l~~~~~~l~----------~l~~vViDEaH~ 193 (931)
..-+ ++. =++-++++..++.++...+. +=.+||+||+|.
T Consensus 198 eKvdPylRPLyDAl~d~l~~~~~~~~~e~~vIEiAPlAyMRGRTL~dAfVIlDEaQN 254 (348)
T COG1702 198 EKVDPYLRPLYDALYDILGAERVEALDERGVIEIAPLAYMRGRTLNDAFVILDEAQN 254 (348)
T ss_pred hhcccccccHHHHHHHHhhHHHHhhhhhcCcEEecchhhhhcCCCCCeEEEEecccc
Confidence 3211 111 13344444444433321111 235899999996
No 267
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.61 E-value=0.35 Score=53.24 Aligned_cols=135 Identities=13% Similarity=0.116 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHh----cCC---cEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHH-HhcCCeE
Q 002357 76 ELDPFQRVSVACLE----RNE---SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELH-QEFKDVG 147 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~----~g~---~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~-~~~~~vg 147 (931)
.++|||..++..+. +|+ -.++.+|.|.||+..+..-+...+-.+... ++. ..-.+.+. ..++++-
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~---~~~----c~~c~~~~~g~HPD~~ 76 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDP---AAA----QRTRQLIAAGTHPDLQ 76 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCC---CCc----chHHHHHhcCCCCCEE
Confidence 37889999987762 443 588999999999987644332222221100 010 00011121 1234555
Q ss_pred EEec--c-cccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEecc
Q 002357 148 LMTG--D-VTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLSA 221 (931)
Q Consensus 148 ~~tG--d-~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~lSA 221 (931)
.+.. + ........|.|-..-.+.+.++..+ .....+++|||+||.|.. ..-..++..+ |.+..+|++|.
T Consensus 77 ~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p-~~g~~kV~iI~~ae~m~~----~AaNaLLKtLEEPp~~~~fiL~~~ 151 (319)
T PRK08769 77 LVSFIPNRTGDKLRTEIVIEQVREISQKLALTP-QYGIAQVVIVDPADAINR----AACNALLKTLEEPSPGRYLWLISA 151 (319)
T ss_pred EEecCCCcccccccccccHHHHHHHHHHHhhCc-ccCCcEEEEeccHhhhCH----HHHHHHHHHhhCCCCCCeEEEEEC
Confidence 5521 1 0001112233322222333333322 235689999999999973 2334444444 44566666664
Q ss_pred C
Q 002357 222 T 222 (931)
Q Consensus 222 T 222 (931)
.
T Consensus 152 ~ 152 (319)
T PRK08769 152 Q 152 (319)
T ss_pred C
Confidence 3
No 268
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.57 E-value=0.27 Score=55.63 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=17.7
Q ss_pred CcEEEEcCCCCCcHHHHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIA 113 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~ 113 (931)
.++++.||+|+|||.+....+.
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~ 62 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMK 62 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999987644433
No 269
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.54 E-value=0.13 Score=63.20 Aligned_cols=86 Identities=17% Similarity=0.156 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC----CCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecc
Q 002357 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGD 152 (931)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~----~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd 152 (931)
|++-|++++.. ...+++|.|..|||||.+...-+...+.. ..++++++.|+..+.+..+++.+..+.-
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~------ 73 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKG------ 73 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc------
Confidence 78899999864 35689999999999999887777777642 3679999999999999999998876421
Q ss_pred cccCCCCCeeEecHHHHHHHHh
Q 002357 153 VTLSPNASCLVMTTEILRGMLY 174 (931)
Q Consensus 153 ~~~~~~~~IlV~Tpe~L~~~l~ 174 (931)
....+.|+|...|...+.
T Consensus 74 ----~~~~v~v~TfHs~a~~il 91 (664)
T TIGR01074 74 ----EARGLTISTFHTLGLDII 91 (664)
T ss_pred ----ccCCeEEEeHHHHHHHHH
Confidence 124688999998865543
No 270
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.54 E-value=0.11 Score=61.12 Aligned_cols=140 Identities=16% Similarity=0.223 Sum_probs=77.7
Q ss_pred HHHHHHHHHHh-----cC----CcEEEEcCCCCCcHHHHHH-HHHHHH---hCCCEEEEEcCchhhHHHHHHHHHHhcCC
Q 002357 79 PFQRVSVACLE-----RN----ESVLVSAHTSAGKTAVAEY-AIAMAF---RDKQRVIYTSPLKALSNQKYRELHQEFKD 145 (931)
Q Consensus 79 ~~Q~~ai~~l~-----~g----~~vlv~apTGsGKTl~~~l-~i~~~l---~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~ 145 (931)
|||+-.+..+. .| +.+++.-|=|.|||..... ++...+ ..+..++++++++.-+...++.++.....
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 67887777663 22 3578888999999976443 333333 24678999999999999999998887652
Q ss_pred eEEEec--cccc--CCCCCeeEecHHHHHHHHhcCccc--cCcccEEEEeccccCCCCCchHHHHHHHHhc--CCCceEE
Q 002357 146 VGLMTG--DVTL--SPNASCLVMTTEILRGMLYRGSEV--LKEVAWVIFDEIHYMKDRERGVVWEESIIFL--PPAIKMV 217 (931)
Q Consensus 146 vg~~tG--d~~~--~~~~~IlV~Tpe~L~~~l~~~~~~--l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l--~~~~q~v 217 (931)
...+.. .... .....|..-.++.....+.+.... =.+..++|+||+|...+.+ .++.+...+ .++.+++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~---~~~~l~~g~~~r~~pl~~ 157 (477)
T PF03354_consen 81 SPELRKRKKPKIIKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDE---LYDALESGMGARPNPLII 157 (477)
T ss_pred ChhhccchhhhhhhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHH---HHHHHHhhhccCCCceEE
Confidence 111110 0000 001122222212111111111111 1256899999999997632 333333222 2355555
Q ss_pred Eecc
Q 002357 218 FLSA 221 (931)
Q Consensus 218 ~lSA 221 (931)
..|.
T Consensus 158 ~IST 161 (477)
T PF03354_consen 158 IIST 161 (477)
T ss_pred EEeC
Confidence 5543
No 271
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.47 E-value=0.23 Score=50.74 Aligned_cols=121 Identities=19% Similarity=0.159 Sum_probs=65.9
Q ss_pred cEEEEcCCCCCcHHHHH-HHHHHHHhCCCEEEEEc--CchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecH-HH
Q 002357 93 SVLVSAHTSAGKTAVAE-YAIAMAFRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT-EI 168 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~-l~i~~~l~~~~rvl~l~--P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp-e~ 168 (931)
-+++.+|||+|||.... +|.....+ +.++.+++ ..|.=+.++.+.+.+..+ +.+..... ...| +.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~-vp~~~~~~---------~~~~~~~ 71 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILG-VPFYVART---------ESDPAEI 71 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHT-EEEEESST---------TSCHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhc-cccchhhc---------chhhHHH
Confidence 46789999999997643 44444444 65554444 245555566666666553 22211100 0012 33
Q ss_pred HHHHHhcCccccCcccEEEEeccccCCCC-CchHHHHHHHHhcCCCceEEEeccCCCCh
Q 002357 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDR-ERGVVWEESIIFLPPAIKMVFLSATMSNA 226 (931)
Q Consensus 169 L~~~l~~~~~~l~~l~~vViDEaH~l~~~-~~g~~~~~ii~~l~~~~q~v~lSAT~~n~ 226 (931)
+...+... .-++.++|++|-+-+.... ..-..+..++....+.--++.+|||....
T Consensus 72 ~~~~l~~~--~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~ 128 (196)
T PF00448_consen 72 AREALEKF--RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE 128 (196)
T ss_dssp HHHHHHHH--HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH
T ss_pred HHHHHHHH--hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH
Confidence 33344321 1346899999999766432 12233444555566666788999998643
No 272
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.40 E-value=0.2 Score=53.76 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=16.9
Q ss_pred CcEEEEcCCCCCcHHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~ 111 (931)
.++++.||+|+|||.++-..
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 57899999999999987543
No 273
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.33 E-value=0.23 Score=49.97 Aligned_cols=132 Identities=15% Similarity=0.037 Sum_probs=73.8
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccc--cCC-CCCeeEec
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVT--LSP-NASCLVMT 165 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~--~~~-~~~IlV~T 165 (931)
....++++..++|-|||.+++--.++++..|.+|+++.=.|--..+=-..+-+..+.+-+...+.. +.. +.+--
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~--- 96 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERD--- 96 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHH---
Confidence 456789999999999999998888888999999999876664321111222222334444332221 111 00000
Q ss_pred HHHHHHHHhcCcc--ccCcccEEEEeccccCCCCCchHHHHHH---HHhcCCCceEEEeccCCC
Q 002357 166 TEILRGMLYRGSE--VLKEVAWVIFDEIHYMKDRERGVVWEES---IIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 166 pe~L~~~l~~~~~--~l~~l~~vViDEaH~l~~~~~g~~~~~i---i~~l~~~~q~v~lSAT~~ 224 (931)
.....+.+..... .-..+++||+||+=+..+.+.-. .+++ +..-|...-+|+..-.+|
T Consensus 97 ~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~-~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 97 IAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLD-VEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCcc-HHHHHHHHHcCCCCCEEEEECCCCC
Confidence 0111112211111 13578999999998877654321 2333 344455666666655555
No 274
>PTZ00293 thymidine kinase; Provisional
Probab=94.23 E-value=0.23 Score=50.85 Aligned_cols=112 Identities=14% Similarity=0.092 Sum_probs=62.3
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILR 170 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~ 170 (931)
|.-.++.+|++||||.-.+-.+......+.+++++-|... ..+...+.+..-......+ +.|....-+.
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~D----------tR~~~~~~I~Sh~g~~~~a-~~v~~~~e~~ 72 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKD----------TRYSDEQNISSHDKQMLKA-IKVSKLKEVL 72 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEeccc----------ccCCCCCcEEecCCCccee-EEcCCHHHHH
Confidence 5556889999999998666667777778899999999743 1120011111111111122 4444444333
Q ss_pred HHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCC
Q 002357 171 GMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATM 223 (931)
Q Consensus 171 ~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~ 223 (931)
.. +.++++|.+||+|.+.+ -..+-..+......+=+-+|-.+.
T Consensus 73 ~~-------~~~~dvI~IDEaQFf~~---i~~~~~~l~~~g~~VivaGLd~Df 115 (211)
T PTZ00293 73 ET-------AKNYDVIAIDEGQFFPD---LVEFSEAAANLGKIVIVAALDGTF 115 (211)
T ss_pred Hh-------ccCCCEEEEEchHhhHh---HHHHHHHHHHCCCeEEEEecCccc
Confidence 22 24689999999998742 112222233334444444555544
No 275
>PLN03025 replication factor C subunit; Provisional
Probab=94.21 E-value=0.25 Score=54.73 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=16.1
Q ss_pred CcEEEEcCCCCCcHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l 110 (931)
.++++.||+|+|||..+..
T Consensus 35 ~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILA 53 (319)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4789999999999987643
No 276
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.19 E-value=0.17 Score=58.81 Aligned_cols=104 Identities=13% Similarity=0.217 Sum_probs=59.6
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHH---hCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAF---RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l---~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (931)
..+++.|++|+|||-.. .++...+ ..+.+++|+.+ ..+.++....+.... .+.+.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l~~~~--------------------~~~~~ 199 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVDILQKTH--------------------KEIEQ 199 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHHhh--------------------hHHHH
Confidence 35889999999999654 4555443 34678888777 466666555553210 11122
Q ss_pred HHHHHhcCccccCcccEEEEeccccCCCCCc-hHHHHHHHHhc-CCCceEEEeccCCC
Q 002357 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRER-GVVWEESIIFL-PPAIKMVFLSATMS 224 (931)
Q Consensus 169 L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~-g~~~~~ii~~l-~~~~q~v~lSAT~~ 224 (931)
+.. .+.+.+++|+||+|.+..... ...+-.++..+ ....|+|+.|-..|
T Consensus 200 ~~~-------~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 200 FKN-------EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred HHH-------HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 221 245788999999999874321 11122223322 33446666555544
No 277
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.19 E-value=0.25 Score=54.19 Aligned_cols=101 Identities=11% Similarity=0.069 Sum_probs=55.6
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEIL 169 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L 169 (931)
.++++++.||+|+|||..+..........|..+.|+.-. .|+.+....+ .+ .+.+.+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~-~l~~~lk~~~----~~------------------~~~~~~ 211 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP-EFIRELKNSI----SD------------------GSVKEK 211 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH-HHHHHHHHHH----hc------------------CcHHHH
Confidence 356899999999999987754444444667666655322 4544433322 10 011222
Q ss_pred HHHHhcCccccCcccEEEEeccccCC--CCCchHHHHHHHH-hcCCCceEEEec
Q 002357 170 RGMLYRGSEVLKEVAWVIFDEIHYMK--DRERGVVWEESII-FLPPAIKMVFLS 220 (931)
Q Consensus 170 ~~~l~~~~~~l~~l~~vViDEaH~l~--~~~~g~~~~~ii~-~l~~~~q~v~lS 220 (931)
.+ .+.+++++||||+..-. +|.+...+..++. .+.....+++.|
T Consensus 212 l~-------~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TS 258 (306)
T PRK08939 212 ID-------AVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTS 258 (306)
T ss_pred HH-------HhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEEC
Confidence 21 25689999999998543 3333233444433 223344455544
No 278
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.17 E-value=0.2 Score=53.09 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=31.2
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhC-CCEEEEEcC
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSP 127 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~-~~rvl~l~P 127 (931)
..|+-++++|+||+|||..+.-.+.....+ +.+++|++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 567789999999999998776555555555 899999984
No 279
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.13 E-value=0.11 Score=48.97 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=39.7
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHHHHH
Q 002357 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGML 173 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l 173 (931)
+++.||+|+|||..+...+... +..++.+...... .. ....+...+..++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~-~~--------------------------~~~~~~~~i~~~~ 50 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELI-SS--------------------------YAGDSEQKIRDFF 50 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHH-TS--------------------------STTHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccc-cc--------------------------ccccccccccccc
Confidence 6899999999998764333222 3444444443222 11 1112233344444
Q ss_pred hcCccccCcccEEEEeccccCCCC
Q 002357 174 YRGSEVLKEVAWVIFDEIHYMKDR 197 (931)
Q Consensus 174 ~~~~~~l~~l~~vViDEaH~l~~~ 197 (931)
..... ...-.+++|||+|.+...
T Consensus 51 ~~~~~-~~~~~vl~iDe~d~l~~~ 73 (132)
T PF00004_consen 51 KKAKK-SAKPCVLFIDEIDKLFPK 73 (132)
T ss_dssp HHHHH-TSTSEEEEEETGGGTSHH
T ss_pred ccccc-cccceeeeeccchhcccc
Confidence 33211 113589999999998754
No 280
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.10 E-value=0.27 Score=48.59 Aligned_cols=131 Identities=11% Similarity=0.080 Sum_probs=64.1
Q ss_pred HHHHHHHH----hcC---CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHH-HhcCCeEEEecc
Q 002357 81 QRVSVACL----ERN---ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELH-QEFKDVGLMTGD 152 (931)
Q Consensus 81 Q~~ai~~l----~~g---~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~-~~~~~vg~~tGd 152 (931)
|.+++..+ .++ +..++.+|.|+||+..+..-+...+....... .+..-.-+. .+. ...+++..+..+
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~-~c~~c~~c~----~~~~~~~~d~~~~~~~ 76 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED-PCGECRSCR----RIEEGNHPDFIIIKPD 76 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT---SSSHHHH----HHHTT-CTTEEEEETT
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC-CCCCCHHHH----HHHhccCcceEEEecc
Confidence 55555444 333 45799999999999877544444332211100 111111122 222 234466666443
Q ss_pred cccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHh---cCCCceEEEeccCCC
Q 002357 153 VTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF---LPPAIKMVFLSATMS 224 (931)
Q Consensus 153 ~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~---l~~~~q~v~lSAT~~ 224 (931)
... ..|-|-....+...++..+. -....++||||||.|.. .....++.. -|.+..++++|-.+.
T Consensus 77 ~~~---~~i~i~~ir~i~~~~~~~~~-~~~~KviiI~~ad~l~~----~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 77 KKK---KSIKIDQIREIIEFLSLSPS-EGKYKVIIIDEADKLTE----EAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp TSS---SSBSHHHHHHHHHHCTSS-T-TSSSEEEEEETGGGS-H----HHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred ccc---chhhHHHHHHHHHHHHHHHh-cCCceEEEeehHhhhhH----HHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 221 13333222223333333322 35789999999999973 334444443 356777777775553
No 281
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.08 E-value=0.41 Score=55.50 Aligned_cols=101 Identities=15% Similarity=0.234 Sum_probs=55.4
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHH-h--CCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAF-R--DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l-~--~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (931)
..+++.||+|+|||-.+. ++...+ . .+.+++|+... .+.++....+... +.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~~~~~v~yi~~~-~f~~~~~~~~~~~----------------------~~~~ 186 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYITSE-KFLNDLVDSMKEG----------------------KLNE 186 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhCCCCeEEEEEHH-HHHHHHHHHHhcc----------------------cHHH
Confidence 368999999999998763 444433 2 35688888653 4444443333210 1222
Q ss_pred HHHHHhcCccccCcccEEEEeccccCCCCCc-hHHHHHHHHhc-CCCceEEEeccC
Q 002357 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRER-GVVWEESIIFL-PPAIKMVFLSAT 222 (931)
Q Consensus 169 L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~-g~~~~~ii~~l-~~~~q~v~lSAT 222 (931)
+...+. .+.+++++||+|.+.+... ...+..++..+ ....++|+.|-.
T Consensus 187 f~~~~~------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~ 236 (440)
T PRK14088 187 FREKYR------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_pred HHHHHH------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 332211 2578999999998875431 12233333333 234455554433
No 282
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=93.97 E-value=0.19 Score=62.42 Aligned_cols=85 Identities=16% Similarity=0.163 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC----CCEEEEEcCchhhHHHHHHHHHHhcCCeEEEec
Q 002357 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTG 151 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~----~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tG 151 (931)
.|+|-|++|+.. ....++|.|..|||||.+...-+...+.. ..++|+++-|+..+..+.+++.+..+.
T Consensus 4 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~------ 75 (726)
T TIGR01073 4 HLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGP------ 75 (726)
T ss_pred ccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhcc------
Confidence 389999999975 34679999999999999988877777753 257999999999999999988877542
Q ss_pred ccccCCCCCeeEecHHHHHHHH
Q 002357 152 DVTLSPNASCLVMTTEILRGML 173 (931)
Q Consensus 152 d~~~~~~~~IlV~Tpe~L~~~l 173 (931)
....+.|+|...+...+
T Consensus 76 -----~~~~~~i~TFHs~~~~i 92 (726)
T TIGR01073 76 -----VAEDIWISTFHSMCVRI 92 (726)
T ss_pred -----ccCCcEEEcHHHHHHHH
Confidence 12467899998876544
No 283
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.95 E-value=0.36 Score=52.47 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=16.8
Q ss_pred CCcEEEEcCCCCCcHHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l 110 (931)
+.++++.+|+|+|||.+|..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 45799999999999998743
No 284
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.93 E-value=0.21 Score=51.33 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCCcHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (931)
.++++.+|+|.|||..|.
T Consensus 51 ~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp -EEEEESSTTSSHHHHHH
T ss_pred ceEEEECCCccchhHHHH
Confidence 479999999999998763
No 285
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.91 E-value=0.44 Score=46.64 Aligned_cols=128 Identities=16% Similarity=0.022 Sum_probs=71.0
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCC-CCCeeEecHHHH--
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSP-NASCLVMTTEIL-- 169 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~-~~~IlV~Tpe~L-- 169 (931)
-+.|-.++|.|||.++.--.+++...|.+|+++.=.|.-..+=-..+-+.++++-+...+....- ..+ ..+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~----~~~~~~~ 79 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTEN----DEEDIAA 79 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCC----hHHHHHH
Confidence 35677788999999998878888889999999655554211111122233345544443322100 000 11111
Q ss_pred -HHHHhcC--ccccCcccEEEEeccccCCCCCch--HHHHHHHHhcCCCceEEEeccCCC
Q 002357 170 -RGMLYRG--SEVLKEVAWVIFDEIHYMKDRERG--VVWEESIIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 170 -~~~l~~~--~~~l~~l~~vViDEaH~l~~~~~g--~~~~~ii~~l~~~~q~v~lSAT~~ 224 (931)
...+... ......+++||+||+=+..+.+.- ..+.+++...|.+.-+|+.+-.+|
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1111111 112357899999999887654321 223344555666777777777766
No 286
>PF13871 Helicase_C_4: Helicase_C-like
Probab=93.90 E-value=0.077 Score=56.55 Aligned_cols=67 Identities=18% Similarity=0.195 Sum_probs=49.8
Q ss_pred HHHHHhcCCceEEEecchhhcccCCCCc--------EEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEE
Q 002357 410 VELLFQEGLVKALFATETFAMGLNMPAK--------TVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIM 481 (931)
Q Consensus 410 v~~~F~~g~i~vLvaT~~la~GIdip~~--------~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~ 481 (931)
.-+.|.+|..+|+|-|++.+.||-+.+- .+-|.. .. |+++...+|..||+.|.|+...-...++
T Consensus 53 e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~l----e~----pwsad~aiQ~~GR~hRsnQ~~~P~y~~l 124 (278)
T PF13871_consen 53 EKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITL----EL----PWSADKAIQQFGRTHRSNQVSAPEYRFL 124 (278)
T ss_pred HHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEe----eC----CCCHHHHHHHhccccccccccCCEEEEe
Confidence 3457999999999999999999988752 222211 12 8899999999999999998654444444
Q ss_pred eCC
Q 002357 482 VDE 484 (931)
Q Consensus 482 ~~~ 484 (931)
.++
T Consensus 125 ~t~ 127 (278)
T PF13871_consen 125 VTD 127 (278)
T ss_pred ecC
Confidence 444
No 287
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.87 E-value=0.36 Score=55.75 Aligned_cols=151 Identities=15% Similarity=0.182 Sum_probs=90.7
Q ss_pred ccCCCCCCHHHHHHHHHHh------cC----CcEEEEcCCCCCcHHHHH-HHHHHHH---hCCCEEEEEcCchhhHHHHH
Q 002357 71 KTYSFELDPFQRVSVACLE------RN----ESVLVSAHTSAGKTAVAE-YAIAMAF---RDKQRVIYTSPLKALSNQKY 136 (931)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~------~g----~~vlv~apTGsGKTl~~~-l~i~~~l---~~~~rvl~l~P~kaL~~Q~~ 136 (931)
..+||++-|||+-++.++. .| ..+++.-|-+-|||..+. +.....+ ..+..+.+++|+.+-+.+.+
T Consensus 56 ~~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred CCCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhh
Confidence 5789999999999999884 12 357899999999997643 3333222 57889999999999999888
Q ss_pred HHHHHhcCCeEEEecccccCCCCC-eeEecHHHHHHHHhcCccc--cCcccEEEEeccccCCCCCchHHHHHHHHhc--C
Q 002357 137 RELHQEFKDVGLMTGDVTLSPNAS-CLVMTTEILRGMLYRGSEV--LKEVAWVIFDEIHYMKDRERGVVWEESIIFL--P 211 (931)
Q Consensus 137 ~~l~~~~~~vg~~tGd~~~~~~~~-IlV~Tpe~L~~~l~~~~~~--l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l--~ 211 (931)
...+.......-++--...+.... |...-.......+...+.. -.+..+.|+||.|...+.+ ..+..+..-+ .
T Consensus 136 ~~ar~mv~~~~~l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~~~~~g~~ar 213 (546)
T COG4626 136 NPARDMVKRDDDLRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYSEAKGGLGAR 213 (546)
T ss_pred HHHHHHHHhCcchhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHHHHHhhhccC
Confidence 887766543221111111111111 1111111111112222222 2356799999999988652 3444444333 3
Q ss_pred CCceEEEeccCC
Q 002357 212 PAIKMVFLSATM 223 (931)
Q Consensus 212 ~~~q~v~lSAT~ 223 (931)
++.++++.|...
T Consensus 214 ~~~l~~~ITT~g 225 (546)
T COG4626 214 PEGLVVYITTSG 225 (546)
T ss_pred cCceEEEEecCC
Confidence 567788877643
No 288
>PRK04328 hypothetical protein; Provisional
Probab=93.85 E-value=0.22 Score=53.03 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=39.9
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHh
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
.|..++|.+++|+|||..+...+...+.++.+++|++ +-+-..+..+.++.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHc
Confidence 4678999999999999987777777788899999987 444555555555554
No 289
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.84 E-value=0.35 Score=56.90 Aligned_cols=36 Identities=14% Similarity=0.353 Sum_probs=24.4
Q ss_pred CcccEEEEeccccCCCCCchHHHHHHHHh---cCCCceEEEec
Q 002357 181 KEVAWVIFDEIHYMKDRERGVVWEESIIF---LPPAIKMVFLS 220 (931)
Q Consensus 181 ~~l~~vViDEaH~l~~~~~g~~~~~ii~~---l~~~~q~v~lS 220 (931)
.+.+++||||||+|... .++.++.. -|+++.+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~----a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGH----SFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHH----HHHHHHHHHhccCCCeEEEEEE
Confidence 46889999999999743 34444443 45567777655
No 290
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=93.84 E-value=0.092 Score=58.94 Aligned_cols=52 Identities=13% Similarity=0.254 Sum_probs=34.6
Q ss_pred cccCCCCCchhhhccCCCCCCHHHHHH--------HHHHhcCCcEEEEcCCCCCcHHHHH
Q 002357 58 GTFANPVYNGEMAKTYSFELDPFQRVS--------VACLERNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 58 ~~~~~~~~~~~~~~~~~f~l~~~Q~~a--------i~~l~~g~~vlv~apTGsGKTl~~~ 109 (931)
..++.....+-+....||+|..+-.++ ++.+.++.|++..+|+|+|||-+|.
T Consensus 168 ~~FT~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 168 KEFTLEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred hhcCHHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 344444455566666777764442211 2566889999999999999997654
No 291
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.84 E-value=0.31 Score=54.02 Aligned_cols=128 Identities=15% Similarity=0.149 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHhc-C---CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHh----cCCeEE
Q 002357 77 LDPFQRVSVACLER-N---ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE----FKDVGL 148 (931)
Q Consensus 77 l~~~Q~~ai~~l~~-g---~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~----~~~vg~ 148 (931)
++|||...+..+.+ | +..++.+|.|.|||..+.. ++..+.-.. |...-.-..+...+.+ .+++..
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~llC~~------~~~~~~Cg~C~sC~~~~~g~HPD~~~ 76 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER-LAAALLCEA------PQGGGACGSCKGCQLLRAGSHPDNFV 76 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHcCCC------CCCCCCCCCCHHHHHHhcCCCCCEEE
Confidence 47889999887743 3 3578999999999987644 333332110 1100000111111111 223333
Q ss_pred EecccccCCCCCeeEecHHHHHHHH---hcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEeccC
Q 002357 149 MTGDVTLSPNASCLVMTTEILRGML---YRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLSAT 222 (931)
Q Consensus 149 ~tGd~~~~~~~~IlV~Tpe~L~~~l---~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~lSAT 222 (931)
+..+.. ...|- .+.++.+. +..+ .....+++||||||.|.. .....++..+ |.+..+|+.|..
T Consensus 77 i~~~~~---~~~i~---id~iR~l~~~~~~~~-~~~~~kv~iI~~a~~m~~----~aaNaLLK~LEEPp~~~~fiL~t~~ 145 (328)
T PRK05707 77 LEPEEA---DKTIK---VDQVRELVSFVVQTA-QLGGRKVVLIEPAEAMNR----NAANALLKSLEEPSGDTVLLLISHQ 145 (328)
T ss_pred EeccCC---CCCCC---HHHHHHHHHHHhhcc-ccCCCeEEEECChhhCCH----HHHHHHHHHHhCCCCCeEEEEEECC
Confidence 322100 01122 24444433 2222 245788999999999973 3445555554 334555544433
No 292
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.76 E-value=0.16 Score=58.38 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=23.8
Q ss_pred CcccEEEEeccccCCCCCchHHHHHHHHhcCC-CceEEEeccC
Q 002357 181 KEVAWVIFDEIHYMKDRERGVVWEESIIFLPP-AIKMVFLSAT 222 (931)
Q Consensus 181 ~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~-~~q~v~lSAT 222 (931)
....++||||||+|.. ..++.++..+.. ..++++.-||
T Consensus 120 g~~KV~IIDEah~Ls~----~A~NALLKtLEEPp~~viFILaT 158 (484)
T PRK14956 120 GKYKVYIIDEVHMLTD----QSFNALLKTLEEPPAHIVFILAT 158 (484)
T ss_pred CCCEEEEEechhhcCH----HHHHHHHHHhhcCCCceEEEeec
Confidence 3578999999999973 456666665532 2344444344
No 293
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.74 E-value=1.2 Score=50.46 Aligned_cols=114 Identities=14% Similarity=0.123 Sum_probs=61.2
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHH-HHhCCCEEEEEc-C-chhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAM-AFRDKQRVIYTS-P-LKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~-~l~~~~rvl~l~-P-~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (931)
..+++++|||+|||..+.--+.. ....|.+|.++. - .+..+.++.+.+.+..+ +.. +.+..+..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lg-vp~------------~~~~~~~~ 290 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMG-MPF------------YPVKDIKK 290 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcC-CCe------------eehHHHHH
Confidence 45789999999999876544433 345666664443 3 34555554444433321 111 01111233
Q ss_pred HHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHH---HHhc---CCCceEEEeccCCCC
Q 002357 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES---IIFL---PPAIKMVFLSATMSN 225 (931)
Q Consensus 169 L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~i---i~~l---~~~~q~v~lSAT~~n 225 (931)
+...+. -++.++||+|=+-+.... ...++++ +... .+.-.++.+|||...
T Consensus 291 l~~~l~-----~~~~D~VLIDTaGr~~rd--~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~ 346 (432)
T PRK12724 291 FKETLA-----RDGSELILIDTAGYSHRN--LEQLERMQSFYSCFGEKDSVENLLVLSSTSSY 346 (432)
T ss_pred HHHHHH-----hCCCCEEEEeCCCCCccC--HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH
Confidence 333332 146799999987665322 2334433 3332 123467889999864
No 294
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.74 E-value=0.14 Score=53.95 Aligned_cols=52 Identities=12% Similarity=0.224 Sum_probs=39.8
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHh
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
.|..+++.+++|+|||..+...+...+.++.+++|++=-.. ..+..+.+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC-HHHHHHHHHHC
Confidence 45778999999999999887777777788999999987544 34555655554
No 295
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.67 E-value=0.15 Score=56.07 Aligned_cols=55 Identities=16% Similarity=0.302 Sum_probs=41.4
Q ss_pred CCHHHHHHHHH-HhcCCcEEEEcCCCCCcHHHHHHHHHHHH---hCCCEEEEEcCchhhH
Q 002357 77 LDPFQRVSVAC-LERNESVLVSAHTSAGKTAVAEYAIAMAF---RDKQRVIYTSPLKALS 132 (931)
Q Consensus 77 l~~~Q~~ai~~-l~~g~~vlv~apTGsGKTl~~~l~i~~~l---~~~~rvl~l~P~kaL~ 132 (931)
+++.|.+.+.. +..+.+++++++||||||... .+++..+ ..+.|++.+-.+.+|.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPEDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCceEEEecCCcccc
Confidence 66778877754 467789999999999999864 5555555 3457888888787874
No 296
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.64 E-value=0.19 Score=57.55 Aligned_cols=123 Identities=11% Similarity=0.162 Sum_probs=76.4
Q ss_pred cEEEEcCCCCCcHHHHHHHHH-HHHh--CCCEEEEEcCchh-hHHHHHHHHHHhcCCeEEE---e-ccc----ccCC-CC
Q 002357 93 SVLVSAHTSAGKTAVAEYAIA-MAFR--DKQRVIYTSPLKA-LSNQKYRELHQEFKDVGLM---T-GDV----TLSP-NA 159 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~-~~l~--~~~rvl~l~P~ka-L~~Q~~~~l~~~~~~vg~~---t-Gd~----~~~~-~~ 159 (931)
-.++.+..|||||.+....++ .++. .+.+++++-|+.. |..-++..+.......|+. . .+. .... +.
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~i~~~~~g~ 82 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSMEIKILNTGK 82 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccEEEecCCCe
Confidence 367899999999988766544 3444 6889999999987 7777788887665543321 1 011 0111 22
Q ss_pred CeeEec----HHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcC--CCceEEEeccCCCChH
Q 002357 160 SCLVMT----TEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP--PAIKMVFLSATMSNAT 227 (931)
Q Consensus 160 ~IlV~T----pe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~--~~~q~v~lSAT~~n~~ 227 (931)
.|++.. |+.+. ....+.++.+|||..+. ...|++++..+. ...+.+++|.||++..
T Consensus 83 ~i~f~g~~d~~~~ik--------~~~~~~~~~idEa~~~~----~~~~~~l~~rlr~~~~~~~i~~t~NP~~~~ 144 (396)
T TIGR01547 83 KFIFKGLNDKPNKLK--------SGAGIAIIWFEEASQLT----FEDIKELIPRLRETGGKKFIIFSSNPESPL 144 (396)
T ss_pred EEEeecccCChhHhh--------CcceeeeehhhhhhhcC----HHHHHHHHHHhhccCCccEEEEEcCcCCCc
Confidence 333322 22221 12346899999999985 347777776664 2223588999986543
No 297
>CHL00181 cbbX CbbX; Provisional
Probab=93.61 E-value=0.29 Score=53.25 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=18.4
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIA 113 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~ 113 (931)
+.++++.+|+|+|||.+|-....
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999998755433
No 298
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.57 E-value=0.11 Score=60.66 Aligned_cols=43 Identities=16% Similarity=0.109 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHHHHH----HhcCCcEEEEcCCCCCcHHHHHHHHHHH
Q 002357 73 YSFELDPFQRVSVAC----LERNESVLVSAHTSAGKTAVAEYAIAMA 115 (931)
Q Consensus 73 ~~f~l~~~Q~~ai~~----l~~g~~vlv~apTGsGKTl~~~l~i~~~ 115 (931)
|||+|+++|.+-+.. +.+|+-.+...|||+|||+.-.-+.+.-
T Consensus 12 fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltW 58 (821)
T KOG1133|consen 12 FPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTW 58 (821)
T ss_pred CCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHH
Confidence 677899999988754 4889999999999999998755544443
No 299
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=93.55 E-value=0.6 Score=46.68 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=57.9
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILR 170 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~ 170 (931)
|.-.++.+|..||||.--+-.+......+.++++..|... ..+ .++.+.+-.....+ .++|-.+..+.
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD----------~R~-~~~~V~Sr~G~~~~-A~~i~~~~~i~ 71 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID----------TRY-GVGKVSSRIGLSSE-AVVIPSDTDIF 71 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc----------ccc-ccceeeeccCCccc-ceecCChHHHH
Confidence 3446899999999999766666666678999999888632 222 12222222222222 34455555555
Q ss_pred HHHhcCccccCcccEEEEeccccCCC
Q 002357 171 GMLYRGSEVLKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 171 ~~l~~~~~~l~~l~~vViDEaH~l~~ 196 (931)
..+....... .+++|.+|||+.+..
T Consensus 72 ~~i~~~~~~~-~~~~v~IDEaQF~~~ 96 (201)
T COG1435 72 DEIAALHEKP-PVDCVLIDEAQFFDE 96 (201)
T ss_pred HHHHhcccCC-CcCEEEEehhHhCCH
Confidence 5554433222 289999999998864
No 300
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.53 E-value=0.1 Score=52.45 Aligned_cols=47 Identities=21% Similarity=0.316 Sum_probs=32.1
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHH
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQK 135 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~ 135 (931)
+.+++++++.+|||+|||..+...+..++..|..|+|+. ...|.+..
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~-~~~L~~~l 90 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT-ASDLLDEL 90 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-HHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee-cCceeccc
Confidence 467889999999999999987666666677888888864 44565553
No 301
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.53 E-value=0.16 Score=61.15 Aligned_cols=36 Identities=19% Similarity=0.493 Sum_probs=24.4
Q ss_pred CcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEec
Q 002357 181 KEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLS 220 (931)
Q Consensus 181 ~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~lS 220 (931)
.+.+++||||+|+|.. ..++.++..+ +.++.+|+.|
T Consensus 118 gr~KVIIIDEah~LT~----~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTN----HAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCH----HHHHHHHHHHHhcCCCeEEEEEE
Confidence 4678999999999974 3345555544 4566666655
No 302
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.52 E-value=0.41 Score=53.54 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=58.6
Q ss_pred HhcCC---cEEEEcCCCCCcHHHHHHHHHHHHhCC-----CEEEEEcC--chhhHHHHHHHHHHh-cCCeEEEecccccC
Q 002357 88 LERNE---SVLVSAHTSAGKTAVAEYAIAMAFRDK-----QRVIYTSP--LKALSNQKYRELHQE-FKDVGLMTGDVTLS 156 (931)
Q Consensus 88 l~~g~---~vlv~apTGsGKTl~~~l~i~~~l~~~-----~rvl~l~P--~kaL~~Q~~~~l~~~-~~~vg~~tGd~~~~ 156 (931)
+.+|+ .+++.+|+|.|||..+...+...+... ...+. .| .... ++.+... .+++-.+.......
T Consensus 39 ~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-~~~~~c~~----c~~i~~~~hPdl~~l~~~~~~~ 113 (351)
T PRK09112 39 YREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-DPDPASPV----WRQIAQGAHPNLLHITRPFDEK 113 (351)
T ss_pred HHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-CCCCCCHH----HHHHHcCCCCCEEEeecccccc
Confidence 35554 589999999999987744333333211 11111 11 2122 2223222 33444332211111
Q ss_pred ---CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEecc
Q 002357 157 ---PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLSA 221 (931)
Q Consensus 157 ---~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~lSA 221 (931)
....|.|----.+.+.+...+ ......+|||||||.|... ..+.++..+ +.+..++++|.
T Consensus 114 ~~~~~~~I~vd~iR~l~~~l~~~~-~~g~~rVviIDeAd~l~~~----aanaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 114 TGKFKTAITVDEIRRVGHFLSQTS-GDGNWRIVIIDPADDMNRN----AANAILKTLEEPPARALFILISH 179 (351)
T ss_pred cccccccCCHHHHHHHHHHhhhcc-ccCCceEEEEEchhhcCHH----HHHHHHHHHhcCCCCceEEEEEC
Confidence 112233322223333333322 2456789999999999732 233344433 44556666653
No 303
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.51 E-value=0.26 Score=57.09 Aligned_cols=89 Identities=16% Similarity=0.140 Sum_probs=55.9
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEe---cH
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVM---TT 166 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~---Tp 166 (931)
.|.-+++.+++|+|||......+......+.+++|++-. +-..|+..+...+.-+.. ++.+. ..
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E-es~~qi~~ra~rlg~~~~------------~l~~~~e~~l 145 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE-ESASQIKLRAERLGLPSD------------NLYLLAETNL 145 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-ccHHHHHHHHHHcCCChh------------cEEEeCCCCH
Confidence 356789999999999987665555555668899999854 445566555544321110 12222 22
Q ss_pred HHHHHHHhcCccccCcccEEEEeccccCCC
Q 002357 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vViDEaH~l~~ 196 (931)
+.+...+.. .+.++||+|+++.+..
T Consensus 146 ~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 146 EAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred HHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 444444422 2578999999997753
No 304
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.44 E-value=0.28 Score=54.31 Aligned_cols=40 Identities=8% Similarity=0.008 Sum_probs=24.2
Q ss_pred CcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEec
Q 002357 181 KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLS 220 (931)
Q Consensus 181 ~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lS 220 (931)
...++|||||+|.+........+..++...+.+.++|+.|
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 3568999999999843322223333444455666666644
No 305
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.43 E-value=0.81 Score=49.34 Aligned_cols=119 Identities=13% Similarity=0.185 Sum_probs=64.2
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc--CchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHH-
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI- 168 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~--P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~- 168 (931)
+-+++.+|+|+|||..+.-.+......+.+|+++. +.+.-+.++...+.+..+ +.++..... . -|..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~-i~~~~~~~~----~-----dp~~~ 142 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLG-VDVIKQKEG----A-----DPAAV 142 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCC-eEEEeCCCC----C-----CHHHH
Confidence 45778899999999865433333345667776665 345544444555555443 443332221 1 1211
Q ss_pred HHHHHhcCccccCcccEEEEeccccCCCCCchHHH---HHHHHhcC------CCceEEEeccCCC
Q 002357 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVW---EESIIFLP------PAIKMVFLSATMS 224 (931)
Q Consensus 169 L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~---~~ii~~l~------~~~q~v~lSAT~~ 224 (931)
....+.. ...+++++||+|=+-+.... ...+ ..+....+ ++--++.++||..
T Consensus 143 ~~~~l~~--~~~~~~D~ViIDT~G~~~~d--~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~ 203 (272)
T TIGR00064 143 AFDAIQK--AKARNIDVVLIDTAGRLQNK--VNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG 203 (272)
T ss_pred HHHHHHH--HHHCCCCEEEEeCCCCCcch--HHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC
Confidence 1222211 11356899999999776532 2222 22333333 4556888999864
No 306
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.42 E-value=0.38 Score=57.16 Aligned_cols=38 Identities=16% Similarity=0.385 Sum_probs=26.4
Q ss_pred cCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEecc
Q 002357 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLSA 221 (931)
Q Consensus 180 l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~lSA 221 (931)
..+.+++||||+|+|.. ..++.++..+ +.++.+|+.|-
T Consensus 122 ~gr~KViIIDEah~Ls~----~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTN----HAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCH----HHHHHHHHhhccCCCCceEEEEeC
Confidence 45688999999999974 3455566555 35666776654
No 307
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.38 E-value=0.24 Score=53.46 Aligned_cols=54 Identities=22% Similarity=0.148 Sum_probs=36.5
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC-CCEEEEEcCchhhHHHHHHHHHHh
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~-~~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
+..|..+++.|+||+|||..+...+...... +.+|+|++--- -..+..+.+...
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~-~~~~~~~r~~~~ 81 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE-PVVRTARRLLGQ 81 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc-CHHHHHHHHHHH
Confidence 4667889999999999998665544444444 88999987532 334444554443
No 308
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.31 E-value=0.16 Score=53.74 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=41.2
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHh
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
.|..++|.||+|+|||..+.-.+...+.+|.+++|++- -+-..|..+.+..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~-ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL-EEHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe-eCCHHHHHHHHHHh
Confidence 46789999999999999887777777788999999984 45666766666554
No 309
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.29 E-value=0.46 Score=51.60 Aligned_cols=84 Identities=15% Similarity=0.214 Sum_probs=44.8
Q ss_pred CCcEEEEcCCCCCcHHHHHH-HHHHHHhCC-CEEEEEc-Cc-hhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecH
Q 002357 91 NESVLVSAHTSAGKTAVAEY-AIAMAFRDK-QRVIYTS-PL-KALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT 166 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l-~i~~~l~~~-~rvl~l~-P~-kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp 166 (931)
+..+++.+|||+|||....- +.......+ .+|.++. -+ +.-+.++...+....+ + +-..+.++
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~-~------------p~~~~~~~ 260 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILG-V------------PVKVARDP 260 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhC-C------------ceeccCCH
Confidence 45688999999999976543 333333323 5554443 22 2223333333333321 0 00123356
Q ss_pred HHHHHHHhcCccccCcccEEEEecc
Q 002357 167 EILRGMLYRGSEVLKEVAWVIFDEI 191 (931)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vViDEa 191 (931)
..+...+.+ +.+.++|++|.+
T Consensus 261 ~~l~~~l~~----~~~~d~vliDt~ 281 (282)
T TIGR03499 261 KELRKALDR----LRDKDLILIDTA 281 (282)
T ss_pred HHHHHHHHH----ccCCCEEEEeCC
Confidence 666655543 346799999975
No 310
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.24 E-value=1.4 Score=49.15 Aligned_cols=127 Identities=9% Similarity=0.101 Sum_probs=66.6
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE-cC-chhhHHHHHHHHHHhcCCeEEEecccccCCCCCe-eEecH
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT-SP-LKALSNQKYRELHQEFKDVGLMTGDVTLSPNASC-LVMTT 166 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l-~P-~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~I-lV~Tp 166 (931)
.++.+++.+|||+|||..+.-........+.+|.++ +- .+.=+..+.+.+.+.. + .++ ++.+|
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~l---g-----------vpv~~~~dp 270 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKL---D-----------VELIVATSP 270 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcC---C-----------CCEEecCCH
Confidence 466788999999999976544334444566666444 32 2332222222222221 1 122 23567
Q ss_pred HHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHH---hcCCCceEEEeccCCCChHHHHHHHH
Q 002357 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII---FLPPAIKMVFLSATMSNATQFAEWIC 234 (931)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~---~l~~~~q~v~lSAT~~n~~e~~~~l~ 234 (931)
+.+...+.... ..++.++|++|=+=+.... ...++++-. ...++.-++.+|||.. ..+..+.+.
T Consensus 271 ~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d--~~~l~EL~~l~~~~~p~~~~LVLsag~~-~~d~~~i~~ 337 (407)
T PRK12726 271 AELEEAVQYMT-YVNCVDHILIDTVGRNYLA--EESVSEISAYTDVVHPDLTCFTFSSGMK-SADVMTILP 337 (407)
T ss_pred HHHHHHHHHHH-hcCCCCEEEEECCCCCccC--HHHHHHHHHHhhccCCceEEEECCCccc-HHHHHHHHH
Confidence 77766553321 1246899999988665422 233333322 2333444567788753 334444444
No 311
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.21 E-value=0.38 Score=55.46 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=24.7
Q ss_pred cccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCCCh
Q 002357 182 EVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNA 226 (931)
Q Consensus 182 ~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n~ 226 (931)
.-.++++||+|++.. ...+.++..+.. ..++++++|-.|.
T Consensus 92 ~~~vL~IDEi~~l~~----~~q~~LL~~le~-~~iilI~att~n~ 131 (413)
T PRK13342 92 RRTILFIDEIHRFNK----AQQDALLPHVED-GTITLIGATTENP 131 (413)
T ss_pred CceEEEEechhhhCH----HHHHHHHHHhhc-CcEEEEEeCCCCh
Confidence 457899999999863 233444444443 4566666665443
No 312
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.21 E-value=0.17 Score=55.79 Aligned_cols=55 Identities=22% Similarity=0.324 Sum_probs=40.8
Q ss_pred CCHHHHHHHHH-HhcCCcEEEEcCCCCCcHHHHHHHHHHHH---hCCCEEEEEcCchhhH
Q 002357 77 LDPFQRVSVAC-LERNESVLVSAHTSAGKTAVAEYAIAMAF---RDKQRVIYTSPLKALS 132 (931)
Q Consensus 77 l~~~Q~~ai~~-l~~g~~vlv~apTGsGKTl~~~l~i~~~l---~~~~rvl~l~P~kaL~ 132 (931)
+++.|.+.+.. +..+.+++++++||||||... .+++..+ ....+++++-.+.+|.
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~~~~rivtIEd~~El~ 191 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQDPTERVFIIEDTGEIQ 191 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcCCCceEEEEcCCCccc
Confidence 56778888764 477889999999999999653 4454442 4567888888888773
No 313
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.12 E-value=0.11 Score=58.10 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=21.9
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHHH
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMAF 116 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~l 116 (931)
+..|+.+++.||+|+|||..+.. +...+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~-i~~~I 192 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQK-IAQAI 192 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHH-HHHhh
Confidence 36889999999999999986544 44444
No 314
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.10 E-value=0.56 Score=55.65 Aligned_cols=101 Identities=19% Similarity=0.301 Sum_probs=58.3
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHH---hCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAF---RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEIL 169 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l---~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L 169 (931)
.+++.+++|+|||-... +|...+ ..+.+|+|+.- ..+.++....+... ..+.+
T Consensus 316 pL~LyG~sGsGKTHLL~-AIa~~a~~~~~g~~V~Yita-eef~~el~~al~~~----------------------~~~~f 371 (617)
T PRK14086 316 PLFIYGESGLGKTHLLH-AIGHYARRLYPGTRVRYVSS-EEFTNEFINSIRDG----------------------KGDSF 371 (617)
T ss_pred cEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEeeH-HHHHHHHHHHHHhc----------------------cHHHH
Confidence 38999999999997643 333333 24678888765 45555544433220 11223
Q ss_pred HHHHhcCccccCcccEEEEeccccCCCCCc-hHHHHHHHHhc-CCCceEEEeccCCC
Q 002357 170 RGMLYRGSEVLKEVAWVIFDEIHYMKDRER-GVVWEESIIFL-PPAIKMVFLSATMS 224 (931)
Q Consensus 170 ~~~l~~~~~~l~~l~~vViDEaH~l~~~~~-g~~~~~ii~~l-~~~~q~v~lSAT~~ 224 (931)
.. .+.++++||||++|.+..... ...+-.++..+ ....++|+.|-..+
T Consensus 372 ~~-------~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P 421 (617)
T PRK14086 372 RR-------RYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPP 421 (617)
T ss_pred HH-------HhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCCh
Confidence 22 245689999999999975432 12222344333 33566776555444
No 315
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.03 E-value=0.25 Score=55.62 Aligned_cols=89 Identities=16% Similarity=0.128 Sum_probs=55.3
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEe---c
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVM---T 165 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~---T 165 (931)
..|.-+++.+++|+|||......+......+.+++|++-.. -..|+..+...+.-. . .++.+. .
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE-s~~qi~~Ra~rlg~~----~--------~~l~l~~e~~ 146 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE-SPEQIKLRADRLGIS----T--------ENLYLLAETN 146 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc-CHHHHHHHHHHcCCC----c--------ccEEEEccCc
Confidence 34677899999999999977655555556678999997653 345554444433211 0 112221 2
Q ss_pred HHHHHHHHhcCccccCcccEEEEeccccCC
Q 002357 166 TEILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
.+.+.+.+.. .+.++||||+++.+.
T Consensus 147 le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 147 LEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred HHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 2444444422 267899999999874
No 316
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.90 E-value=1.7 Score=47.95 Aligned_cols=123 Identities=12% Similarity=0.119 Sum_probs=62.4
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc-Cc-hhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS-PL-KALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~-P~-kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (931)
+.-+.+.+|+|+|||..+.--.......+.+|+++. .+ ++-+.++...+.... ++.++......++ ...
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~-~i~~~~~~~~~dp--------a~~ 184 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERV-GVPVIAQKEGADP--------ASV 184 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHc-CceEEEeCCCCCH--------HHH
Confidence 456788999999999765433232334566666554 43 444444444443333 2444333211111 011
Q ss_pred HHHHHhcCccccCcccEEEEeccccCCCCCc-hHHHHHHHHh------cCCCceEEEeccCCC
Q 002357 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRER-GVVWEESIIF------LPPAIKMVFLSATMS 224 (931)
Q Consensus 169 L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~-g~~~~~ii~~------l~~~~q~v~lSAT~~ 224 (931)
....+... ..+++++||+|=+-++..... -..+..+... ..++-.++.++||..
T Consensus 185 v~~~l~~~--~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g 245 (318)
T PRK10416 185 AFDAIQAA--KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG 245 (318)
T ss_pred HHHHHHHH--HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC
Confidence 11111111 135789999999987753311 1122222221 123445889999964
No 317
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=92.78 E-value=0.11 Score=53.06 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=20.6
Q ss_pred EEEEcCCCCCcHHHHHHH-HHHHHhCCCEEEEEcCchhh
Q 002357 94 VLVSAHTSAGKTAVAEYA-IAMAFRDKQRVIYTSPLKAL 131 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~-i~~~l~~~~rvl~l~P~kaL 131 (931)
.++.|.+|||||+-+..- +..+++.|++|+. ....|
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t--ni~gL 39 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT--NIPGL 39 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE----TTB
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE--ccCCc
Confidence 478999999999987766 6667776665555 44434
No 318
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.75 E-value=0.46 Score=56.62 Aligned_cols=36 Identities=17% Similarity=0.378 Sum_probs=23.1
Q ss_pred CcccEEEEeccccCCCCCchHHHHHHHHh---cCCCceEEEec
Q 002357 181 KEVAWVIFDEIHYMKDRERGVVWEESIIF---LPPAIKMVFLS 220 (931)
Q Consensus 181 ~~l~~vViDEaH~l~~~~~g~~~~~ii~~---l~~~~q~v~lS 220 (931)
...+++||||+|+|... ....++.. -+.++.+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~----A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTH----SFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHH----HHHHHHHHHhcCCCCcEEEEEE
Confidence 46789999999999743 33334433 34556666644
No 319
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.74 E-value=0.45 Score=57.19 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=24.0
Q ss_pred cCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEe
Q 002357 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFL 219 (931)
Q Consensus 180 l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~l 219 (931)
.....++||||||+|.. ...+.++..+ |.++.+|+.
T Consensus 117 ~g~~KV~IIDEah~Ls~----~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSR----HSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred cCCCEEEEEechHhCCH----HHHHHHHHHHHcCCCCeEEEEe
Confidence 34688999999999974 3455555554 345555555
No 320
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.73 E-value=0.68 Score=51.43 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHhc--C---CcEEEEcCCCCCcHHHHHHHHHHHH
Q 002357 78 DPFQRVSVACLER--N---ESVLVSAHTSAGKTAVAEYAIAMAF 116 (931)
Q Consensus 78 ~~~Q~~ai~~l~~--g---~~vlv~apTGsGKTl~~~l~i~~~l 116 (931)
+|||...+..+.. + +..++.||.|.||+..+.. ++..+
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~-~A~~L 45 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH-LAQGL 45 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH-HHHHH
Confidence 5778877776632 2 4678999999999988743 33443
No 321
>PHA00350 putative assembly protein
Probab=92.72 E-value=0.73 Score=51.95 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=26.9
Q ss_pred EEEEcCCCCCcHHHHHH-HHHHHHhCCCEEEEEcCchhhH
Q 002357 94 VLVSAHTSAGKTAVAEY-AIAMAFRDKQRVIYTSPLKALS 132 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l-~i~~~l~~~~rvl~l~P~kaL~ 132 (931)
.++.|..|||||+-+.. .|..+++.|++| | +...-|-
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR~V-~-TNI~Gl~ 41 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGRKV-I-TNIPGLN 41 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCCEE-E-ECCCCCC
Confidence 47899999999998875 577788888644 3 2444343
No 322
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=92.72 E-value=0.2 Score=54.11 Aligned_cols=102 Identities=23% Similarity=0.296 Sum_probs=63.1
Q ss_pred HhcC--CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEec
Q 002357 88 LERN--ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMT 165 (931)
Q Consensus 88 l~~g--~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~T 165 (931)
+.++ .++++++|.|+|||..+-+.+...-.+.-+.+=++-|.+=.++...-|++--
T Consensus 157 ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq---------------------- 214 (554)
T KOG2028|consen 157 IEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQ---------------------- 214 (554)
T ss_pred HHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHH----------------------
Confidence 4455 4799999999999998766555544445567777777776666544443310
Q ss_pred HHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcC--CCceEEEeccCCCChH
Q 002357 166 TEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP--PAIKMVFLSATMSNAT 227 (931)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~--~~~q~v~lSAT~~n~~ 227 (931)
.. ....++=..+.+||+|+.+...- -..|| .+--+++..||-.|+.
T Consensus 215 --~~-------~~l~krkTilFiDEiHRFNksQQ-------D~fLP~VE~G~I~lIGATTENPS 262 (554)
T KOG2028|consen 215 --NE-------KSLTKRKTILFIDEIHRFNKSQQ-------DTFLPHVENGDITLIGATTENPS 262 (554)
T ss_pred --HH-------HhhhcceeEEEeHHhhhhhhhhh-------hcccceeccCceEEEecccCCCc
Confidence 00 11123445788999998864211 11233 2345788889987765
No 323
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.68 E-value=0.24 Score=54.34 Aligned_cols=89 Identities=22% Similarity=0.149 Sum_probs=57.8
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEe---cHH
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVM---TTE 167 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~---Tpe 167 (931)
|.-+.+.+|+|+|||..++-.+......+.+++|+.+--++..+..+.+ .-+ . .++++. +.+
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~l---Gvd---------~---~~l~v~~p~~~e 119 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKL---GVD---------L---DNLLISQPDTGE 119 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHc---CCC---------H---HHheecCCCCHH
Confidence 5678899999999999988888888888999999999887776543332 111 0 112332 334
Q ss_pred HHHHHHhcCccccCcccEEEEeccccCC
Q 002357 168 ILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 168 ~L~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
.+...+..- ..-..+++||+|=+-.+.
T Consensus 120 q~l~i~~~l-i~s~~~~lIVIDSvaal~ 146 (325)
T cd00983 120 QALEIADSL-VRSGAVDLIVVDSVAALV 146 (325)
T ss_pred HHHHHHHHH-HhccCCCEEEEcchHhhc
Confidence 444433221 012368899999876553
No 324
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.65 E-value=2.1 Score=52.24 Aligned_cols=126 Identities=16% Similarity=0.157 Sum_probs=69.2
Q ss_pred CCcEEEEcCCCCCcHHHHH-HHHHHHHhCC-CEEEEEc-Cc-hhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecH
Q 002357 91 NESVLVSAHTSAGKTAVAE-YAIAMAFRDK-QRVIYTS-PL-KALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT 166 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~-l~i~~~l~~~-~rvl~l~-P~-kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp 166 (931)
++-+.+.+|||+|||.... ++.......+ .+|.++. -+ +.=+..+.+.+.+..+ + +-.++.+|
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~g---v----------pv~~~~~~ 251 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILG---V----------PVHAVKDA 251 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCC---C----------CccccCCH
Confidence 4567899999999987644 3333333454 3554433 22 2223233344444331 1 11234578
Q ss_pred HHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHH---hcCCCceEEEeccCCCChHHHHHHHHhh
Q 002357 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII---FLPPAIKMVFLSATMSNATQFAEWICHL 236 (931)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~---~l~~~~q~v~lSAT~~n~~e~~~~l~~~ 236 (931)
+.+...+.. +.+.++|+||=+=+.... ....+++.. ..++.-.++.+|||.. ..++.+.+..+
T Consensus 252 ~~l~~al~~----~~~~D~VLIDTAGRs~~d--~~l~eel~~l~~~~~p~e~~LVLsAt~~-~~~l~~i~~~f 317 (767)
T PRK14723 252 ADLRFALAA----LGDKHLVLIDTVGMSQRD--RNVSEQIAMLCGVGRPVRRLLLLNAASH-GDTLNEVVHAY 317 (767)
T ss_pred HHHHHHHHH----hcCCCEEEEeCCCCCccC--HHHHHHHHHHhccCCCCeEEEEECCCCc-HHHHHHHHHHH
Confidence 877776653 446789999998876532 223333322 2334556888999963 44444444433
No 325
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.61 E-value=0.3 Score=53.44 Aligned_cols=93 Identities=23% Similarity=0.279 Sum_probs=58.3
Q ss_pred CCHHHHHHHHH-HhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC---CCEEEEEcCchhhHHHHHHHHHHhcCC-eEEEec
Q 002357 77 LDPFQRVSVAC-LERNESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYRELHQEFKD-VGLMTG 151 (931)
Q Consensus 77 l~~~Q~~ai~~-l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~---~~rvl~l~P~kaL~~Q~~~~l~~~~~~-vg~~tG 151 (931)
+++-|...+.. +..+.+++++++||||||... .+++..+.. +.+++++-.+.+|.- ..++ +.+.++
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~ri~tiEd~~El~~--------~~~~~v~~~~~ 187 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTDRVVIIEDTRELQC--------AAPNVVQLRTS 187 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCceEEEECCchhhcC--------CCCCEEEEEec
Confidence 45556666644 466789999999999999865 555555532 678988888888732 1122 222222
Q ss_pred ccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccc
Q 002357 152 DVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192 (931)
Q Consensus 152 d~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH 192 (931)
. + ..|...+.....+ .+.+++|+.|+=
T Consensus 188 ~-----~----~~~~~~~l~~aLR-----~~pD~iivGEiR 214 (299)
T TIGR02782 188 D-----D----AISMTRLLKATLR-----LRPDRIIVGEVR 214 (299)
T ss_pred C-----C----CCCHHHHHHHHhc-----CCCCEEEEeccC
Confidence 1 1 1266655544332 257899999985
No 326
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.61 E-value=0.29 Score=64.14 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCC---CEEEEEcCchhhHHHHHHHHHHhcCCeEEEecc-
Q 002357 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK---QRVIYTSPLKALSNQKYRELHQEFKDVGLMTGD- 152 (931)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~---~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd- 152 (931)
+|+-|.+||. ..+.+++|+|..|||||.+..--++..+..+ .++++++=|++.+.++..++.+.....---..+
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~~p~~ 79 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQEPNS 79 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 6789999997 5788999999999999998766666665443 459999999999999888887765411000000
Q ss_pred c----ccCCCCCeeEecHHHHHHHHhcCccccC--cccEEEEecccc
Q 002357 153 V----TLSPNASCLVMTTEILRGMLYRGSEVLK--EVAWVIFDEIHY 193 (931)
Q Consensus 153 ~----~~~~~~~IlV~Tpe~L~~~l~~~~~~l~--~l~~vViDEaH~ 193 (931)
. ....-...-|+|...+...+-+.....- +-++=|.||...
T Consensus 80 ~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 80 KHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred HHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0 0011134568888877644433221111 124556887764
No 327
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=92.57 E-value=0.5 Score=54.63 Aligned_cols=108 Identities=19% Similarity=0.227 Sum_probs=59.3
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHH-HhCCCEEEEEcCchhhHHHHHHHHHHhcCCeE---EEeccccc--------
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPLKALSNQKYRELHQEFKDVG---LMTGDVTL-------- 155 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~-l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg---~~tGd~~~-------- 155 (931)
+..|.-+++.|+||+|||..+.-.+... ...+.+|+|++.- .=..|...++......+. +..|..+.
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlE-m~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~ 269 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLE-MSAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLN 269 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHH
Confidence 4567889999999999998776554443 3678889998733 233344444333222111 11222110
Q ss_pred ----CCCCCeeE-----ecHHHHHHHHhcCccccCcccEEEEeccccCCC
Q 002357 156 ----SPNASCLV-----MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 156 ----~~~~~IlV-----~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~ 196 (931)
-.+.++.| .|++.++..+.+-......+++||||=.|.|..
T Consensus 270 ~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 270 AVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 00123333 345555544332211122588999999888864
No 328
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.50 E-value=0.68 Score=49.67 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=43.6
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHh
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
-.|..++|.+++|+|||..+.-.+...+..|.+++|++-. +...+..+.+..+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~-e~~~~l~~~~~~~ 73 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE-ESPEELLENARSF 73 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec-CCHHHHHHHHHHc
Confidence 4678999999999999998877777778889999998865 6677777777763
No 329
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=92.48 E-value=0.15 Score=56.80 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=21.6
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHHH
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMAF 116 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~l 116 (931)
+-+|+..++.||.|+|||..+.- |+..+
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK~-Ian~I 193 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQN-IANSI 193 (416)
T ss_pred cccCceEEEeCCCCCChhHHHHH-HHHHH
Confidence 36899999999999999976533 44444
No 330
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=92.38 E-value=0.51 Score=49.37 Aligned_cols=99 Identities=15% Similarity=0.113 Sum_probs=56.2
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCC------CEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeE
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDK------QRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLV 163 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~------~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV 163 (931)
.|+-+.+.+|+|+|||..+...+......+ .+++|+..-..+..+....+...++ .-.. ... ..+.+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~---~~~~--~~~--~~i~~ 90 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFG---LDPE--EVL--DNIYV 90 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhc---cchh--hhh--ccEEE
Confidence 357789999999999998776666665555 7899988765433332222222111 1000 000 11222
Q ss_pred ---ecHHHHHHHHhcCcc--ccCcccEEEEeccccCC
Q 002357 164 ---MTTEILRGMLYRGSE--VLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 164 ---~Tpe~L~~~l~~~~~--~l~~l~~vViDEaH~l~ 195 (931)
.+++.+...+..-.. .-..+++||+|-+-.+.
T Consensus 91 ~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~ 127 (226)
T cd01393 91 ARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALF 127 (226)
T ss_pred EeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhh
Confidence 355555554433211 12478899999987553
No 331
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.37 E-value=0.35 Score=58.06 Aligned_cols=37 Identities=19% Similarity=0.394 Sum_probs=24.5
Q ss_pred cCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEec
Q 002357 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLS 220 (931)
Q Consensus 180 l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~lS 220 (931)
..+.+++||||+|.|.. ..+..++..+ +.++.+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~----~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSK----SAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCH----HHHHHHHHHHHhCCCCcEEEEEe
Confidence 45778999999998864 2333444443 5567777665
No 332
>PRK08506 replicative DNA helicase; Provisional
Probab=92.30 E-value=0.57 Score=54.78 Aligned_cols=108 Identities=18% Similarity=0.235 Sum_probs=64.2
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeE---EEeccccc---------
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVG---LMTGDVTL--------- 155 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg---~~tGd~~~--------- 155 (931)
+..|.-+++.|.||.|||..++-.+......+.+|+|.+.- .=..|...++......+. +..|+.+.
T Consensus 189 ~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a 267 (472)
T PRK08506 189 FNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLE-MPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDA 267 (472)
T ss_pred CCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCc-CCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 35667889999999999998776666666778889888765 345566655544332211 12222210
Q ss_pred ---CCCCCeeE-----ecHHHHHHHHhcCccccCcccEEEEeccccCCC
Q 002357 156 ---SPNASCLV-----MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 156 ---~~~~~IlV-----~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~ 196 (931)
-.+.++.| .|+..++..+.+-......+++||||=.+.|..
T Consensus 268 ~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 268 CDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred HHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccC
Confidence 01223433 355656554432211123589999999998863
No 333
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.25 E-value=0.81 Score=53.80 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=19.9
Q ss_pred ccCcccEEEEeccccCCCCCchHHHHHHHHhc
Q 002357 179 VLKEVAWVIFDEIHYMKDRERGVVWEESIIFL 210 (931)
Q Consensus 179 ~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l 210 (931)
...+..+|||||+|.+. ...++.++..+
T Consensus 113 ~~~~~kVVIIDEad~ls----~~a~naLLk~L 140 (504)
T PRK14963 113 LRGGRKVYILDEAHMMS----KSAFNALLKTL 140 (504)
T ss_pred ccCCCeEEEEECccccC----HHHHHHHHHHH
Confidence 35678899999999885 33455555555
No 334
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.22 E-value=2.9 Score=46.88 Aligned_cols=138 Identities=19% Similarity=0.226 Sum_probs=76.0
Q ss_pred CCcEEEEcCCCCCcHHH-HHHHHHHH-HhCCCE-EEEEcCc-hhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecH
Q 002357 91 NESVLVSAHTSAGKTAV-AEYAIAMA-FRDKQR-VIYTSPL-KALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT 166 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~-~~l~i~~~-l~~~~r-vl~l~P~-kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp 166 (931)
++.+.+.||||.|||.. |=+|.... +....+ .|+++-| |-=+..+.+.+.+..+ =+=++|-+|
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~-------------vp~~vv~~~ 269 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMG-------------VPLEVVYSP 269 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhC-------------CceEEecCH
Confidence 67888999999999975 33443333 233333 4555544 2223333333333321 122456778
Q ss_pred HHHHHHHhcCccccCcccEEEEeccccCC-CCCchHHHHHHHHhcCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEe
Q 002357 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMK-DRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVY 245 (931)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vViDEaH~l~-~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~ 245 (931)
.-|..-+.. +++.++|.+|=+=+-. |...-..+.+.+....+--..+.+|||. +..++.+.+..
T Consensus 270 ~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~-K~~dlkei~~~---------- 334 (407)
T COG1419 270 KELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT-KYEDLKEIIKQ---------- 334 (407)
T ss_pred HHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc-chHHHHHHHHH----------
Confidence 777665543 6678999999886443 2222222333333343445578899996 44444454443
Q ss_pred cCCCCCcceeeee
Q 002357 246 TDFRPTPLQHYVF 258 (931)
Q Consensus 246 ~~~rp~pl~~~~~ 258 (931)
++..|+..+++
T Consensus 335 --f~~~~i~~~I~ 345 (407)
T COG1419 335 --FSLFPIDGLIF 345 (407)
T ss_pred --hccCCcceeEE
Confidence 44556665554
No 335
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.17 E-value=0.72 Score=52.14 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=23.8
Q ss_pred cCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEec
Q 002357 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLS 220 (931)
Q Consensus 180 l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~lS 220 (931)
..+..++||||+|.+.+ ..++.++..+ |.+..+|+.|
T Consensus 117 ~~~~kviIIDEa~~l~~----~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSR----HSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred cCCceEEEEEChhhcCH----HHHHHHHHHHhcCCCCeEEEEEc
Confidence 34678999999999973 2344444443 4556666654
No 336
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.17 E-value=0.51 Score=57.83 Aligned_cols=40 Identities=15% Similarity=0.281 Sum_probs=26.5
Q ss_pred cccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCCCh
Q 002357 182 EVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNA 226 (931)
Q Consensus 182 ~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n~ 226 (931)
...++|+||+|++.. ...+.++..+. ..++++.+||-+|.
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~lE-~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWVE-NGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHhc-CceEEEEEecCCCh
Confidence 456899999999863 22333443333 45688888887655
No 337
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.10 E-value=0.21 Score=55.48 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=54.4
Q ss_pred HHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC-CeEEEecccccCCCCCeeEec
Q 002357 87 CLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDVTLSPNASCLVMT 165 (931)
Q Consensus 87 ~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~vg~~tGd~~~~~~~~IlV~T 165 (931)
++..+.+++|++|||||||... .+++..+....+++.+-.+.+|... .. .+.+.+.. +. ...-..|
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll-~aLl~~i~~~~rivtiEd~~El~l~--------~~~~v~l~~~~---~~-~~~~~~t 224 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMS-KTLISAIPPQERLITIEDTLELVIP--------HENHVRLLYSK---NG-AGLGAVT 224 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHH-HHHHcccCCCCCEEEECCCccccCC--------CCCEEEEEeec---cc-cCcCccC
Confidence 3467899999999999999764 5666666777888888888877421 11 12222211 00 1111236
Q ss_pred HHHHHHHHhcCccccCcccEEEEeccc
Q 002357 166 TEILRGMLYRGSEVLKEVAWVIFDEIH 192 (931)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vViDEaH 192 (931)
.+.+.....+ .+.+.||+.|+=
T Consensus 225 ~~~ll~~~LR-----~~pD~IivGEiR 246 (344)
T PRK13851 225 AEHLLQASLR-----MRPDRILLGEMR 246 (344)
T ss_pred HHHHHHHHhc-----CCCCeEEEEeeC
Confidence 6555443332 257889999985
No 338
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.01 E-value=0.28 Score=56.08 Aligned_cols=44 Identities=30% Similarity=0.425 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHhcC--CcEEEEcCCCCCcHHHHHHHHHHHHhCCCE
Q 002357 77 LDPFQRVSVACLERN--ESVLVSAHTSAGKTAVAEYAIAMAFRDKQR 121 (931)
Q Consensus 77 l~~~Q~~ai~~l~~g--~~vlv~apTGsGKTl~~~l~i~~~l~~~~r 121 (931)
++++|...+..+.+. .-++|.+|||||||.. +|+++..+..+.+
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~~~ 287 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTPER 287 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCCCc
Confidence 588898888877443 3478999999999986 4666666655433
No 339
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=92.01 E-value=0.16 Score=59.67 Aligned_cols=146 Identities=19% Similarity=0.246 Sum_probs=91.9
Q ss_pred CCHHHHHHHHHHhc--------CC--cEEEEcCCCCCcHHH-HHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC-
Q 002357 77 LDPFQRVSVACLER--------NE--SVLVSAHTSAGKTAV-AEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK- 144 (931)
Q Consensus 77 l~~~Q~~ai~~l~~--------g~--~vlv~apTGsGKTl~-~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~- 144 (931)
+...|.+|+-...+ |+ ..|+-...|-||-.. +.+..-..|+..+|+|+++=...|--+..++++....
T Consensus 265 lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL~DigA~ 344 (1300)
T KOG1513|consen 265 LSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERDLRDIGAT 344 (1300)
T ss_pred hhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhhchhhcCCC
Confidence 78899999854421 22 245555555555432 2233345567778999999999998888888888764
Q ss_pred ----------CeEEEecccccCCCCCeeEecHHHHHHHHh-cCc---cccC--------c-ccEEEEeccccCCC-----
Q 002357 145 ----------DVGLMTGDVTLSPNASCLVMTTEILRGMLY-RGS---EVLK--------E-VAWVIFDEIHYMKD----- 196 (931)
Q Consensus 145 ----------~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~-~~~---~~l~--------~-l~~vViDEaH~l~~----- 196 (931)
..+-+.++.+-+-.--|+++|+-.|..--. .+. ..++ + =++|||||||...+
T Consensus 345 ~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKNL~p~~ 424 (1300)
T KOG1513|consen 345 GIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKNLVPTA 424 (1300)
T ss_pred CccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhccccccc
Confidence 123344555555556789999987763221 110 0011 1 26899999997765
Q ss_pred ----CCchHHHHHHHHhcCCCceEEEeccCC
Q 002357 197 ----RERGVVWEESIIFLPPAIKMVFLSATM 223 (931)
Q Consensus 197 ----~~~g~~~~~ii~~l~~~~q~v~lSAT~ 223 (931)
...|..+-++-..|| +.++|.-|||-
T Consensus 425 ~~k~TKtG~tVLdLQk~LP-~ARVVYASATG 454 (1300)
T KOG1513|consen 425 GAKSTKTGKTVLDLQKKLP-NARVVYASATG 454 (1300)
T ss_pred CCCcCcccHhHHHHHHhCC-CceEEEeeccC
Confidence 123444555555565 78899999994
No 340
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=91.98 E-value=0.37 Score=50.77 Aligned_cols=64 Identities=23% Similarity=0.273 Sum_probs=39.1
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRG 171 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~ 171 (931)
.++++.+|+|.|||..|.+...+. +.+ +- .|++-. +--|+-|..
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Em---gvn------------------------~k-~tsGp~--------leK~gDlaa 96 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANEL---GVN------------------------LK-ITSGPA--------LEKPGDLAA 96 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHHh---cCC------------------------eE-eccccc--------ccChhhHHH
Confidence 579999999999998654322221 111 11 122211 223455555
Q ss_pred HHhcCccccCcccEEEEeccccCC
Q 002357 172 MLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 172 ~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
+|.. +..=+.+.+||+|+++
T Consensus 97 iLt~----Le~~DVLFIDEIHrl~ 116 (332)
T COG2255 97 ILTN----LEEGDVLFIDEIHRLS 116 (332)
T ss_pred HHhc----CCcCCeEEEehhhhcC
Confidence 6543 6677899999999995
No 341
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=91.92 E-value=1 Score=48.29 Aligned_cols=133 Identities=21% Similarity=0.188 Sum_probs=71.0
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhC-CCEEEEEcCchhhHHHHHHHHHHhcCCeE---EEecccccC--------
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSPLKALSNQKYRELHQEFKDVG---LMTGDVTLS-------- 156 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~-~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg---~~tGd~~~~-------- 156 (931)
..|.-+++.|+||.|||..+.-.+...... +.+|+|++.--. ..+...++-.....+. +.+|..+..
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~-~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~~~ 95 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMS-EEELAARLLARLSGVPYNKIRSGDLSDEEFERLQAA 95 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS--HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHHHH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCC-HHHHHHHHHHHhhcchhhhhhccccCHHHHHHHHHH
Confidence 445678999999999999887766666655 689999987522 2233333322221110 111111100
Q ss_pred ----CCCCeeE-----ecHHHHHHHHhcCccccCcccEEEEeccccCCCC----CchHHHHHHHHhc---C--CCceEEE
Q 002357 157 ----PNASCLV-----MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDR----ERGVVWEESIIFL---P--PAIKMVF 218 (931)
Q Consensus 157 ----~~~~IlV-----~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~----~~g~~~~~ii~~l---~--~~~q~v~ 218 (931)
.+..++| .|++.+.+.+.+-.....++++||+|=.|.+... .+...+..+...| . .++.++.
T Consensus 96 ~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~ 175 (259)
T PF03796_consen 96 AEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIPVIA 175 (259)
T ss_dssp HHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 0111221 3666666655433222368899999999998763 2233333333222 1 2566666
Q ss_pred eccC
Q 002357 219 LSAT 222 (931)
Q Consensus 219 lSAT 222 (931)
+|-.
T Consensus 176 ~sQl 179 (259)
T PF03796_consen 176 LSQL 179 (259)
T ss_dssp EEEB
T ss_pred cccc
Confidence 6654
No 342
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=91.89 E-value=2.1 Score=47.16 Aligned_cols=133 Identities=9% Similarity=0.082 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHH----hcC---CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHH-hcCCeEE
Q 002357 77 LDPFQRVSVACL----ERN---ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQ-EFKDVGL 148 (931)
Q Consensus 77 l~~~Q~~ai~~l----~~g---~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~-~~~~vg~ 148 (931)
++|||...+..+ .+| +-.++.||.|.||+..+...+...+-..... --|-.-. -++.+.. ..+++-.
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~-~~Cg~C~----sC~~~~~g~HPD~~~ 78 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS-EACGFCH----SCELMQSGNHPDLHV 78 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC-CCCCCCH----HHHHHHcCCCCCEEE
Confidence 567777777655 344 3689999999999987643333222111100 0000101 1111111 2335544
Q ss_pred EecccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEeccC
Q 002357 149 MTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLSAT 222 (931)
Q Consensus 149 ~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~lSAT 222 (931)
+..+. .+..|-|-....+...++..+ .....+++|||+||+|. ......++..+ |++..+|++|..
T Consensus 79 i~p~~---~~~~I~vdqiR~l~~~~~~~~-~~~~~kV~iI~~ae~m~----~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 79 IKPEK---EGKSITVEQIRQCNRLAQESS-QLNGYRLFVIEPADAMN----ESASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred EecCc---CCCcCCHHHHHHHHHHHhhCc-ccCCceEEEecchhhhC----HHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 43211 112232222222333333222 34578999999999997 33455555555 344555655544
No 343
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.84 E-value=0.93 Score=54.34 Aligned_cols=37 Identities=19% Similarity=0.403 Sum_probs=25.0
Q ss_pred cCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEec
Q 002357 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLS 220 (931)
Q Consensus 180 l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~lS 220 (931)
...++++||||+|+|.. ..++.++..+ |.++.+|+.|
T Consensus 122 ~g~~KV~IIDEvh~Ls~----~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTN----TAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred cCCceEEEEEChhhCCH----HHHHHHHHhcccCCCCeEEEEEE
Confidence 35689999999999973 3455555555 3455566554
No 344
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=91.84 E-value=1.1 Score=49.38 Aligned_cols=130 Identities=8% Similarity=0.085 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHH----hcC---CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHH-hcCCeEE
Q 002357 77 LDPFQRVSVACL----ERN---ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQ-EFKDVGL 148 (931)
Q Consensus 77 l~~~Q~~ai~~l----~~g---~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~-~~~~vg~ 148 (931)
++|||...+..+ .+| +-.++.||.|.||+..+..-+...+-......--|-.- ..++.+.. ..+++-.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C----~sC~~~~~g~HPD~~~ 78 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQC----HSCHLFQAGNHPDFHI 78 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCC----HHHHHHhcCCCCCEEE
Confidence 356777776655 343 45779999999999876433322221111000000000 01111211 1224444
Q ss_pred EecccccCCCCCeeEecHHHHHHH---HhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEeccC
Q 002357 149 MTGDVTLSPNASCLVMTTEILRGM---LYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLSAT 222 (931)
Q Consensus 149 ~tGd~~~~~~~~IlV~Tpe~L~~~---l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~lSAT 222 (931)
+... .+..| ..+.++.+ ++..+ .-...+++|||+||+|.. .....++..+ |++..+++.|..
T Consensus 79 i~p~----~~~~I---~id~iR~l~~~~~~~~-~~g~~KV~iI~~a~~m~~----~AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 79 LEPI----DNKDI---GVDQVREINEKVSQHA-QQGGNKVVYIQGAERLTE----AAANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred Eccc----cCCCC---CHHHHHHHHHHHhhcc-ccCCceEEEEechhhhCH----HHHHHHHHHhcCCCCCeEEEEEECC
Confidence 4321 11122 23444443 33222 245789999999999983 3455555555 345555555544
No 345
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=91.81 E-value=0.23 Score=52.21 Aligned_cols=21 Identities=24% Similarity=0.169 Sum_probs=15.8
Q ss_pred EEecchhhcccCCCCcEEEEe
Q 002357 422 LFATETFAMGLNMPAKTVVFT 442 (931)
Q Consensus 422 LvaT~~la~GIdip~~~vVI~ 442 (931)
-+.|-.-+.|..++.+.++..
T Consensus 184 ~~~T~~e~qG~tf~~V~l~~~ 204 (234)
T PF01443_consen 184 RVFTVHESQGLTFDNVTLVLL 204 (234)
T ss_pred ceechHHcceEEeCCEEEEEC
Confidence 456666678999998887774
No 346
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.81 E-value=1 Score=53.36 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=24.8
Q ss_pred cCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEec
Q 002357 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLS 220 (931)
Q Consensus 180 l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~lS 220 (931)
..+..++||||+|.|.. ...+.++..+ |.++.+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~----~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSK----SAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCH----HHHHHHHHHHhCCCCCEEEEEEe
Confidence 45788999999999974 2344444444 4566677665
No 347
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.81 E-value=0.63 Score=52.46 Aligned_cols=106 Identities=17% Similarity=0.250 Sum_probs=56.3
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCC--CEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDK--QRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~--~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (931)
..-+++.||+|+|||-.........+..+ .+++|++.-.- .+.....++. .+.+.
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f-~~~~v~a~~~----------------------~~~~~ 169 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDF-TNDFVKALRD----------------------NEMEK 169 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHH-HHHHHHHHHh----------------------hhHHH
Confidence 35689999999999976433333333333 36666654421 1111111111 01111
Q ss_pred HHHHHhcCccccCcccEEEEeccccCCCCCc-hHHHHHHHHhcC-CCceEEEeccCCCChH
Q 002357 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRER-GVVWEESIIFLP-PAIKMVFLSATMSNAT 227 (931)
Q Consensus 169 L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~-g~~~~~ii~~l~-~~~q~v~lSAT~~n~~ 227 (931)
+. ... ++++++||.++.+...+. ...+-.++..+. ...|+|+.|-..|...
T Consensus 170 Fk-------~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l 222 (408)
T COG0593 170 FK-------EKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKEL 222 (408)
T ss_pred HH-------Hhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhh
Confidence 11 224 789999999999976532 112222333333 3448888887776443
No 348
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.75 E-value=0.32 Score=58.49 Aligned_cols=138 Identities=17% Similarity=0.137 Sum_probs=75.0
Q ss_pred HHHHHhc---CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccC----
Q 002357 84 SVACLER---NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLS---- 156 (931)
Q Consensus 84 ai~~l~~---g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~---- 156 (931)
.++.+.+ .+-++++||.|+|||....-... ....+..|.+++=- +=-|+-++-++.....++-.+.+..-+
T Consensus 27 L~~~L~~~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlsld-e~dndp~rF~~yLi~al~~~~p~~~~~a~~l 104 (894)
T COG2909 27 LLDRLRRANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLD-ESDNDPARFLSYLIAALQQATPTLGDEAQTL 104 (894)
T ss_pred HHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecC-CccCCHHHHHHHHHHHHHHhCccccHHHHHH
Confidence 3444533 35689999999999986543333 44555556555422 223333333333322222211111100
Q ss_pred CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCC
Q 002357 157 PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 157 ~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~ 224 (931)
.+.+.-+.-.+.+..++.. -....+.=++|+|.-|++.+..-..-+...+.+.|++.++++.|=+-|
T Consensus 105 ~q~~~~~~l~~l~~~L~~E-la~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 105 LQKHQYVSLESLLSSLLNE-LASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred HHhcccccHHHHHHHHHHH-HHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 0011111111222222211 011223358999999999998777778888999999999999997755
No 349
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.73 E-value=1.1 Score=49.44 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=15.6
Q ss_pred cEEEEcCCCCCcHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l 110 (931)
++++.||+|+|||.++..
T Consensus 40 ~~ll~G~~G~GKt~~~~~ 57 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALA 57 (319)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 599999999999987644
No 350
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.73 E-value=0.95 Score=52.72 Aligned_cols=110 Identities=15% Similarity=0.277 Sum_probs=55.2
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHH--HHHHHHHh-cCCeEEEecccccCCCCCeeEecHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQ--KYRELHQE-FKDVGLMTGDVTLSPNASCLVMTTEI 168 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q--~~~~l~~~-~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (931)
+..+++||.|+|||.++.+. +..+.-.. -|+-.-|.+ .+..+... +.++-.+.+... ...+.
T Consensus 36 ha~Lf~Gp~G~GKTT~Aril-Ak~LnC~~-----~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~---------~~vdd 100 (491)
T PRK14964 36 QSILLVGASGVGKTTCARII-SLCLNCSN-----GPTSDPCGTCHNCISIKNSNHPDVIEIDAASN---------TSVDD 100 (491)
T ss_pred ceEEEECCCCccHHHHHHHH-HHHHcCcC-----CCCCCCccccHHHHHHhccCCCCEEEEecccC---------CCHHH
Confidence 46899999999999977433 33332100 111111111 12222221 224433333211 12234
Q ss_pred HHHHHhc--CccccCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEec
Q 002357 169 LRGMLYR--GSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLS 220 (931)
Q Consensus 169 L~~~l~~--~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~lS 220 (931)
++..+.. ......+..++||||+|.+.. ..++.++..+ |+++.+|+.+
T Consensus 101 IR~Iie~~~~~P~~~~~KVvIIDEah~Ls~----~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 101 IKVILENSCYLPISSKFKVYIIDEVHMLSN----SAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred HHHHHHHHHhccccCCceEEEEeChHhCCH----HHHHHHHHHHhCCCCCeEEEEEe
Confidence 4443321 112356789999999999974 3344444444 4556666654
No 351
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=91.64 E-value=1 Score=51.84 Aligned_cols=118 Identities=18% Similarity=0.221 Sum_probs=59.8
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcC--chhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP--LKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEIL 169 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P--~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L 169 (931)
..+++++++|+|||.++.-.+......+.+++++.. .+.-+.++.+.+....+ +-. .+.. ...+ ..+.+
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~g-vp~-~~~~---~~~d----~~~i~ 166 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIG-VPF-YGDP---DNKD----AVEIA 166 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcC-CcE-EecC---CccC----HHHHH
Confidence 467899999999998765433333355666665543 23333333333333321 111 1110 0001 11333
Q ss_pred HHHHhcCccccCcccEEEEeccccCCCCCchHHHHHH---HHhcCCCceEEEeccCCC
Q 002357 170 RGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES---IIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 170 ~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~i---i~~l~~~~q~v~lSAT~~ 224 (931)
.+.+.. +...++||+|.+-+.... ...++++ .....+..-++.++||..
T Consensus 167 ~~al~~----~~~~DvVIIDTAGr~~~d--~~lm~El~~l~~~~~pdevlLVvda~~g 218 (437)
T PRK00771 167 KEGLEK----FKKADVIIVDTAGRHALE--EDLIEEMKEIKEAVKPDEVLLVIDATIG 218 (437)
T ss_pred HHHHHH----hhcCCEEEEECCCcccch--HHHHHHHHHHHHHhcccceeEEEecccc
Confidence 444433 223489999999555322 2333333 233445556777888775
No 352
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.56 E-value=0.37 Score=48.82 Aligned_cols=53 Identities=23% Similarity=0.320 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHH-hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchh
Q 002357 77 LDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKA 130 (931)
Q Consensus 77 l~~~Q~~ai~~l-~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~ka 130 (931)
+++.|.+.+... ..|.++++++|||||||... .++...+....+++.+--..+
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i~~~~~~i~ied~~E 63 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL-NALLAFIPPDERIITIEDTAE 63 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhcCCCCCEEEECCccc
Confidence 567788777654 77899999999999999864 445555555556665544333
No 353
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.50 E-value=0.91 Score=50.28 Aligned_cols=121 Identities=15% Similarity=0.099 Sum_probs=55.8
Q ss_pred cCCc-EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHH-hcCCeEEEecccccCCCCCeeEecHH
Q 002357 90 RNES-VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQ-EFKDVGLMTGDVTLSPNASCLVMTTE 167 (931)
Q Consensus 90 ~g~~-vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~-~~~~vg~~tGd~~~~~~~~IlV~Tpe 167 (931)
+..+ +++.+|.|+|||.++ ++++..+......-.-.+.... ....+.. ..+++-.++..... ..+ .+.+
T Consensus 22 ~~~halL~~Gp~G~Gktt~a-~~lA~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~d~lel~~s~~~--~~~---i~~~ 92 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAA-LALAKELLCENPTGLLPCGHCR---SCKLIPAGNHPDFLELNPSDLR--KID---IIVE 92 (325)
T ss_pred CCCceeeeeCCCCCCHHHHH-HHHHHHHhCCCcccCCcccchh---hhhHHhhcCCCceEEecccccC--CCc---chHH
Confidence 3456 999999999999886 4444444211110000111110 0011111 11133333221111 111 2344
Q ss_pred HHHHHHhcCccc--cCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEec
Q 002357 168 ILRGMLYRGSEV--LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLS 220 (931)
Q Consensus 168 ~L~~~l~~~~~~--l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lS 220 (931)
.++.+....... .....+||+|||+.|.. +.+..+..++..-+.+..+++.+
T Consensus 93 ~vr~~~~~~~~~~~~~~~kviiidead~mt~-~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 93 QVRELAEFLSESPLEGGYKVVIIDEADKLTE-DAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred HHHHHHHHhccCCCCCCceEEEeCcHHHHhH-HHHHHHHHHhccCCCCeEEEEEc
Confidence 444444333222 36789999999999974 12333333333334455555554
No 354
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=91.44 E-value=0.79 Score=53.09 Aligned_cols=68 Identities=21% Similarity=0.211 Sum_probs=50.2
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHh------CCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCee
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFR------DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCL 162 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~------~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~Il 162 (931)
.++.-++|++..|||||.+|+--++..+- .++.|+++.|.+-+..-+.+.+-+++. ..++
T Consensus 224 ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeLGe--------------~~V~ 289 (747)
T COG3973 224 EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPELGE--------------EGVV 289 (747)
T ss_pred cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhhcc--------------Ccee
Confidence 45567899999999999999876665552 245599999999998887777655532 3466
Q ss_pred EecHHHHH
Q 002357 163 VMTTEILR 170 (931)
Q Consensus 163 V~Tpe~L~ 170 (931)
..|++-+.
T Consensus 290 q~Tf~e~a 297 (747)
T COG3973 290 QETFEEWA 297 (747)
T ss_pred eccHHHHH
Confidence 67776554
No 355
>PRK06904 replicative DNA helicase; Validated
Probab=91.40 E-value=1.1 Score=52.44 Aligned_cols=133 Identities=20% Similarity=0.212 Sum_probs=73.3
Q ss_pred HHhcCCcEEEEcCCCCCcHHHHHHHHHHH-HhCCCEEEEEcCchhhHHHHHHHHHHhcCCe---EEEec-ccc-------
Q 002357 87 CLERNESVLVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPLKALSNQKYRELHQEFKDV---GLMTG-DVT------- 154 (931)
Q Consensus 87 ~l~~g~~vlv~apTGsGKTl~~~l~i~~~-l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~v---g~~tG-d~~------- 154 (931)
-+..|.-+++.|.||.|||..++-.+... ...+..|+|.+.- .=..|+..++-.....+ .+..| ..+
T Consensus 217 Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~ 295 (472)
T PRK06904 217 GLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLE-MPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKI 295 (472)
T ss_pred ccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHH
Confidence 34667788999999999998664333333 3457888888765 44556666655443321 12233 111
Q ss_pred ------cCCCCCeeE-----ecHHHHHHHHhcCccccCcccEEEEeccccCCCCC----chHHHHHHHHhc---C--CCc
Q 002357 155 ------LSPNASCLV-----MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRE----RGVVWEESIIFL---P--PAI 214 (931)
Q Consensus 155 ------~~~~~~IlV-----~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~----~g~~~~~ii~~l---~--~~~ 214 (931)
+....++.| .|+..++....+....-..+++||||=.+.|...+ +...+.++...| . -++
T Consensus 296 ~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~i 375 (472)
T PRK06904 296 SSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKELKV 375 (472)
T ss_pred HHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCC
Confidence 112233554 35665654443221112358999999999886432 222333333222 2 256
Q ss_pred eEEEec
Q 002357 215 KMVFLS 220 (931)
Q Consensus 215 q~v~lS 220 (931)
.+|++|
T Consensus 376 pVi~ls 381 (472)
T PRK06904 376 PVVALS 381 (472)
T ss_pred eEEEEE
Confidence 667766
No 356
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=91.39 E-value=0.48 Score=58.79 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=25.4
Q ss_pred cCcccEEEEeccccCCCCCchHHHHHHHH---hcCCCceEEEec
Q 002357 180 LKEVAWVIFDEIHYMKDRERGVVWEESII---FLPPAIKMVFLS 220 (931)
Q Consensus 180 l~~l~~vViDEaH~l~~~~~g~~~~~ii~---~l~~~~q~v~lS 220 (931)
....+++||||+|+|.. ..++.++. ..+.++.+|+.+
T Consensus 118 ~~~~KV~IIDEad~lt~----~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTP----QGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred cCCceEEEEechhhcCH----HHHHHHHHHHhCCCCCeEEEEEe
Confidence 35789999999999974 23444444 445677777765
No 357
>PRK06620 hypothetical protein; Validated
Probab=91.30 E-value=0.46 Score=49.29 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCCcHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (931)
..+++.||+|+|||-.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999998654
No 358
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=91.28 E-value=0.75 Score=49.57 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=58.6
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHH---hC----CCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEe
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAF---RD----KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVM 164 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l---~~----~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~ 164 (931)
.++++.|+|+.|||.+..--....- .. -+-+.+-+|...=..-.|..+-..++ ...++..
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg--------aP~~~~~----- 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG--------APYRPRD----- 128 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC--------cccCCCC-----
Confidence 5899999999999986532221111 01 12345666776666666666555543 1111111
Q ss_pred cHHHHHHHHhcCccccCcccEEEEeccccCCCCCch--HHHHHHHHhcCC--CceEEEe
Q 002357 165 TTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERG--VVWEESIIFLPP--AIKMVFL 219 (931)
Q Consensus 165 Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g--~~~~~ii~~l~~--~~q~v~l 219 (931)
+...+.+...+ -..--++.++||||+|.++..... ..+-..++.+.. .+.+|++
T Consensus 129 ~~~~~~~~~~~-llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 129 RVAKLEQQVLR-LLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred CHHHHHHHHHH-HHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe
Confidence 22222222111 001226889999999998653221 122233444544 3445554
No 359
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=91.27 E-value=1 Score=50.00 Aligned_cols=95 Identities=17% Similarity=0.156 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC-CeEEEecccccCCC
Q 002357 80 FQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDVTLSPN 158 (931)
Q Consensus 80 ~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~vg~~tGd~~~~~~ 158 (931)
...++-.....+..|++.+++|+||+.+|- +|...-.+...-++.+...++.....+ ...|+ .-|.++|.....
T Consensus 11 ~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr-~iH~~s~r~~~pfv~vnc~~~~~~~l~--~~lfG~~~g~~~ga~~~~-- 85 (329)
T TIGR02974 11 VLEQVSRLAPLDRPVLIIGERGTGKELIAA-RLHYLSKRWQGPLVKLNCAALSENLLD--SELFGHEAGAFTGAQKRH-- 85 (329)
T ss_pred HHHHHHHHhCCCCCEEEECCCCChHHHHHH-HHHHhcCccCCCeEEEeCCCCChHHHH--HHHhccccccccCccccc--
Confidence 344444555677899999999999999864 333332222233444444344433222 12344 334455543211
Q ss_pred CCeeEecHHHHHHHHhcCccccCcccEEEEeccccCC
Q 002357 159 ASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 159 ~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
+ +.....+=+.+++||+|.+.
T Consensus 86 -------~---------G~~~~a~gGtL~Ldei~~L~ 106 (329)
T TIGR02974 86 -------Q---------GRFERADGGTLFLDELATAS 106 (329)
T ss_pred -------C---------CchhhCCCCEEEeCChHhCC
Confidence 1 11112345789999999987
No 360
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.21 E-value=0.88 Score=54.29 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=25.3
Q ss_pred cCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEec
Q 002357 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLS 220 (931)
Q Consensus 180 l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~lS 220 (931)
..+..++||||+|+|... ..+.++..+ |.++.+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~----A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA----GFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHH----HHHHHHHHHhcCCCCeEEEEEe
Confidence 467899999999999743 444544444 4566666655
No 361
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.12 E-value=0.64 Score=57.21 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=24.3
Q ss_pred CcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEe
Q 002357 181 KEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFL 219 (931)
Q Consensus 181 ~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~l 219 (931)
....++||||||+|. ...++.++..+ |.++.+|+.
T Consensus 118 gk~KViIIDEAh~LT----~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLS----RSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcC----HHHHHHHHHHHhccCCCeEEEEE
Confidence 467899999999996 33455555555 445666665
No 362
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=91.12 E-value=0.74 Score=51.79 Aligned_cols=116 Identities=21% Similarity=0.201 Sum_probs=66.3
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC-CeEEEecccccCCCCCeeEecHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDVTLSPNASCLVMTTE 167 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~vg~~tGd~~~~~~~~IlV~Tpe 167 (931)
-.|.+|++.++||+||+++|...-...-+.....+|.+..-++++.-.. .. +|| .-|.+||-..-. + +
T Consensus 99 p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~-~e-LFG~~kGaftGa~~~k--~-------G 167 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQE-AE-LFGHEKGAFTGAQGGK--A-------G 167 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHH-HH-HhccccceeecccCCc--C-------c
Confidence 5678999999999999998754332222212334455555555554322 22 777 678888832211 1 1
Q ss_pred HHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc------------CCCceEEEeccCCCChHH
Q 002357 168 ILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL------------PPAIKMVFLSATMSNATQ 228 (931)
Q Consensus 168 ~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l------------~~~~q~v~lSAT~~n~~e 228 (931)
..-..+=+.+.+||+|.+.-. .-+.++..+ +..+.+-..+||-.+..+
T Consensus 168 ---------lfe~A~GGtLfLDEI~~LP~~----~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~ 227 (403)
T COG1221 168 ---------LFEQANGGTLFLDEIHRLPPE----GQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEE 227 (403)
T ss_pred ---------hheecCCCEEehhhhhhCCHh----HHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHH
Confidence 111234578999999999733 223333332 234455666777665543
No 363
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=91.11 E-value=0.47 Score=49.65 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=31.4
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCc
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL 128 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~ 128 (931)
.|.-+++.+++|+|||..+.-.+...+..+.+++|+.=-
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 356789999999999988776666666778899988655
No 364
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.08 E-value=0.55 Score=54.69 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=15.8
Q ss_pred cEEEEcCCCCCcHHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~ 111 (931)
.+++.||+|+|||..+...
T Consensus 38 ~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999987543
No 365
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=91.05 E-value=0.64 Score=55.44 Aligned_cols=127 Identities=17% Similarity=0.231 Sum_probs=80.3
Q ss_pred CCCCCCHHHHHHHHHHhcC--CcEEEEcCCCCCcHHHHHHHHHHHHh-CCCEEEEEcCchhhHHHHH-HHHHHhcCCe--
Q 002357 73 YSFELDPFQRVSVACLERN--ESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKY-RELHQEFKDV-- 146 (931)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~~g--~~vlv~apTGsGKTl~~~l~i~~~l~-~~~rvl~l~P~kaL~~Q~~-~~l~~~~~~v-- 146 (931)
+..+.+|||.+.++++... +.|.+..++-+|||.+.+..+...+. ....++|+.||..++.... .+|.-.+...
T Consensus 13 w~~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~ 92 (557)
T PF05876_consen 13 WRTDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIRASPV 92 (557)
T ss_pred CCCCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCHH
Confidence 4557899999999999544 57999999999999977666555553 4578999999999999876 3444444311
Q ss_pred --EEEec------ccccC----CCCCeeEec---HHHHHHHHhcCccccCcccEEEEeccccCCC--CCchHHHHHHHH
Q 002357 147 --GLMTG------DVTLS----PNASCLVMT---TEILRGMLYRGSEVLKEVAWVIFDEIHYMKD--RERGVVWEESII 208 (931)
Q Consensus 147 --g~~tG------d~~~~----~~~~IlV~T---pe~L~~~l~~~~~~l~~l~~vViDEaH~l~~--~~~g~~~~~ii~ 208 (931)
+.+.. +.++. ++..+.++. |..| .-..++++++||++.+.. .+-|..++....
T Consensus 93 l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~~~l---------~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~ 162 (557)
T PF05876_consen 93 LRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSPSNL---------RSRPARYLLLDEVDRYPDDVGGEGDPVELAEK 162 (557)
T ss_pred HHHHhCchhhcccCCchhheecCCCEEEEEeCCCCccc---------ccCCcCEEEEechhhccccCccCCCHHHHHHH
Confidence 11221 11110 122333322 2222 233688999999998843 233555554443
No 366
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.02 E-value=1.6 Score=51.25 Aligned_cols=31 Identities=29% Similarity=0.310 Sum_probs=21.7
Q ss_pred HHHHHHHH----hcC---CcEEEEcCCCCCcHHHHHHH
Q 002357 81 QRVSVACL----ERN---ESVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 81 Q~~ai~~l----~~g---~~vlv~apTGsGKTl~~~l~ 111 (931)
|..++..+ ..+ +.++++||.|+|||.++-..
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHH
Confidence 55555443 444 36899999999999987443
No 367
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=90.98 E-value=0.62 Score=51.24 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCCcHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (931)
.++++.+|+|+|||..+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 469999999999998653
No 368
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=90.96 E-value=1.1 Score=49.29 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=21.7
Q ss_pred HHHHHhcCCcEEEEcCCCCCcHHHHHH
Q 002357 84 SVACLERNESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 84 ai~~l~~g~~vlv~apTGsGKTl~~~l 110 (931)
.+..+..++++++.+|+|+|||..+..
T Consensus 57 vl~~l~~~~~ilL~G~pGtGKTtla~~ 83 (327)
T TIGR01650 57 ICAGFAYDRRVMVQGYHGTGKSTHIEQ 83 (327)
T ss_pred HHHHHhcCCcEEEEeCCCChHHHHHHH
Confidence 445567788999999999999987643
No 369
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=90.93 E-value=0.37 Score=52.39 Aligned_cols=60 Identities=20% Similarity=0.132 Sum_probs=44.7
Q ss_pred CCCC-CCHHHHHHHHHHhcC-CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHH
Q 002357 73 YSFE-LDPFQRVSVACLERN-ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSN 133 (931)
Q Consensus 73 ~~f~-l~~~Q~~ai~~l~~g-~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~ 133 (931)
..|. +++-|...+..+.+. .|+++++.||||||... .++........|+|.+--|-+|--
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlL-Nal~~~i~~~eRvItiEDtaELql 214 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLL-NALSGFIDSDERVITIEDTAELQL 214 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHH-HHHHhcCCCcccEEEEeehhhhcc
Confidence 3555 888888888776544 59999999999999752 444445555669999988877743
No 370
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.90 E-value=1.6 Score=49.11 Aligned_cols=122 Identities=12% Similarity=0.045 Sum_probs=59.0
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHhCC---C-------EEEEEcCchhhHHHHHHHHHH-hcCCeEEEeccccc---CCC
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAFRDK---Q-------RVIYTSPLKALSNQKYRELHQ-EFKDVGLMTGDVTL---SPN 158 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~~~---~-------rvl~l~P~kaL~~Q~~~~l~~-~~~~vg~~tGd~~~---~~~ 158 (931)
-.++.+|.|.||+..+...+...+-.. . ..+-+++.-. .++.+.. ..+++-.+.-...- +..
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~----~c~~i~~~~HPDl~~i~~~~~~~~~~~~ 118 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP----VARRIAAGAHGGLLTLERSWNEKGKRLR 118 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh----HHHHHHccCCCCeEEEeccccccccccc
Confidence 589999999999987644333333211 1 1122233322 2222322 23355554321110 112
Q ss_pred CCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEeccCC
Q 002357 159 ASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLSATM 223 (931)
Q Consensus 159 ~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~lSAT~ 223 (931)
..|.|-..-.+...+... ..-....+|||||+|+|.. .....++..+ |....+|++|..+
T Consensus 119 ~~I~VdqiR~l~~~~~~~-~~~~~~kVviIDead~m~~----~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 119 TVITVDEVRELISFFGLT-AAEGGWRVVIVDTADEMNA----NAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred ccccHHHHHHHHHHhCcC-cccCCCEEEEEechHhcCH----HHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 334333333333333322 2245678999999999963 3333444433 3455566655444
No 371
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=90.89 E-value=0.6 Score=53.28 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHH
Q 002357 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~ 109 (931)
+.......+..+..++++++.+|+|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 455566677788899999999999999998874
No 372
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=90.85 E-value=1.2 Score=44.13 Aligned_cols=135 Identities=19% Similarity=0.161 Sum_probs=73.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC-CeEEEe--ccccc---CCCCCeeEecHH
Q 002357 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMT--GDVTL---SPNASCLVMTTE 167 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~vg~~t--Gd~~~---~~~~~IlV~Tpe 167 (931)
++|.-..|=|||.+++=-+++++.+|.+|.|+.=.|.=...--+.....|+ .+.... -+... +++.++ ....
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw~~~~~~~d~--~aa~ 108 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFTWETQDREADI--AAAK 108 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhhccceeEEecCCceeCCCcCcHHHH--HHHH
Confidence 455556667889999888899999999999987766553333333333333 222211 11111 122343 2222
Q ss_pred HHHHHHhcCcccc--CcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEeccCCCCh-HHHHHHHH
Q 002357 168 ILRGMLYRGSEVL--KEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLSATMSNA-TQFAEWIC 234 (931)
Q Consensus 168 ~L~~~l~~~~~~l--~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~lSAT~~n~-~e~~~~l~ 234 (931)
..+. .....+ ..+++||+||+-+....+.- .+++++..+ |.+..+|+..-..|.. .+.++.+.
T Consensus 109 ~~w~---~a~~~l~~~~ydlviLDEl~~al~~g~l-~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlVT 177 (198)
T COG2109 109 AGWE---HAKEALADGKYDLVILDELNYALRYGLL-PLEEVVALLKARPEHTHVIITGRGAPPELIELADLVT 177 (198)
T ss_pred HHHH---HHHHHHhCCCCCEEEEehhhHHHHcCCC-CHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 2211 111112 26899999999988765432 345555444 4555666655444432 25555554
No 373
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.70 E-value=1.4 Score=52.15 Aligned_cols=37 Identities=16% Similarity=0.339 Sum_probs=24.7
Q ss_pred cCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEec
Q 002357 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLS 220 (931)
Q Consensus 180 l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~lS 220 (931)
..+..++||||+|+|.. ..++.++..+ |.++.+|+.|
T Consensus 117 ~g~~kViIIDEa~~ls~----~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSK----QSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccH----HHHHHHHHHHhcCCCCceEEEEE
Confidence 45678999999999974 2344444443 4566676655
No 374
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=90.62 E-value=0.47 Score=55.43 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCCcHHHH
Q 002357 91 NESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~ 108 (931)
.+.+++.+|+|+|||..+
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 467999999999999875
No 375
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=90.52 E-value=1.5 Score=43.54 Aligned_cols=127 Identities=16% Similarity=0.100 Sum_probs=66.7
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHH-HHHHHHhcCCeEEEecccc--cC-CCCCeeEecHHH
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQK-YRELHQEFKDVGLMTGDVT--LS-PNASCLVMTTEI 168 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~-~~~l~~~~~~vg~~tGd~~--~~-~~~~IlV~Tpe~ 168 (931)
-+.+..++|-|||.++.--.+++...|.+|+++.=.|.-..+= ...+... .+.+...+.. .. .+..- ....
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~---~~~~ 81 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREA---DTAI 81 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHH---HHHH
Confidence 4677888999999999888888889999998874444321000 1112221 2222222111 11 11000 0111
Q ss_pred HHHHHhcCcc--ccCcccEEEEeccccCCCCCch--HHHHHHHHhcCCCceEEEeccCCC
Q 002357 169 LRGMLYRGSE--VLKEVAWVIFDEIHYMKDRERG--VVWEESIIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 169 L~~~l~~~~~--~l~~l~~vViDEaH~l~~~~~g--~~~~~ii~~l~~~~q~v~lSAT~~ 224 (931)
..+.+..... .-..+++||+||+=...+.+.- ..+..++..-|++.-+|+..-.+|
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 1122211111 1357899999999876654322 122334455566777777666665
No 376
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.50 E-value=0.24 Score=53.86 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCCCcHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~ 108 (931)
..+.|++.+|+|+|||+.|
T Consensus 184 PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCCceEeeCCCCCcHHHHH
Confidence 4578999999999999975
No 377
>PF05729 NACHT: NACHT domain
Probab=90.46 E-value=1.3 Score=43.26 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=25.7
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHhCC-----CEEEEEcCchhhHHH
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAFRDK-----QRVIYTSPLKALSNQ 134 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~~~-----~rvl~l~P~kaL~~Q 134 (931)
-++|.|++|+|||......+....... ..+++..+.+....+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDS 48 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhc
Confidence 478999999999987644433333222 145555555555554
No 378
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=90.43 E-value=0.9 Score=53.94 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=17.9
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAF 116 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l 116 (931)
+.++++||.|+|||..|.. ++..+
T Consensus 39 hA~Lf~GP~GvGKTTlA~~-lAk~L 62 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKI-FAKAI 62 (605)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHh
Confidence 4588999999999998744 33443
No 379
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=90.39 E-value=1.2 Score=53.46 Aligned_cols=38 Identities=26% Similarity=0.518 Sum_probs=25.9
Q ss_pred ccCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEec
Q 002357 179 VLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLS 220 (931)
Q Consensus 179 ~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~lS 220 (931)
.+.+.++|||||+|.|.. ...+.++..+ |.++.+|+.+
T Consensus 129 ~~a~~KVvIIDEad~Ls~----~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 129 VSARYKVYIIDEVHMLST----AAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred hcCCcEEEEEEChHhCCH----HHHHHHHHHHHhCCCCeEEEEEe
Confidence 456789999999999974 2344444443 5567777755
No 380
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.39 E-value=0.92 Score=54.11 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=17.0
Q ss_pred CcEEEEcCCCCCcHHHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYAI 112 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i 112 (931)
..+|+++|.|+|||.++.+..
T Consensus 39 ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 457899999999999875443
No 381
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=90.16 E-value=0.25 Score=51.62 Aligned_cols=97 Identities=15% Similarity=0.245 Sum_probs=48.6
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHh-CCCEEEEEcCchhhHHHHHHHH--------------HHhcCCeEEEeccccc
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYREL--------------HQEFKDVGLMTGDVTL 155 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~-~~~rvl~l~P~kaL~~Q~~~~l--------------~~~~~~vg~~tGd~~~ 155 (931)
+..++|.||-|+|||...- .+...+. .+..++|+.+...-.......+ ....+...... ..
T Consensus 20 ~~~~~l~G~rg~GKTsLl~-~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~ 95 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLK-EFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEK---IS 95 (234)
T ss_dssp SSEEEEEESTTSSHHHHHH-HHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEE---EE
T ss_pred CcEEEEEcCCcCCHHHHHH-HHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchh---hh
Confidence 4789999999999998643 3333332 2335677766544433333333 11111111000 00
Q ss_pred CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCC
Q 002357 156 SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 156 ~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
.........+...+...+...... -+|||||+|++.
T Consensus 96 ~~~~~~~~~~l~~~~~~l~~~~~~----~iiviDe~~~~~ 131 (234)
T PF01637_consen 96 KDLSEDSFSALERLLEKLKKKGKK----VIIVIDEFQYLA 131 (234)
T ss_dssp CTS-GG-G--HHHHHHHHHHCHCC----EEEEEETGGGGG
T ss_pred hcchhhHHHHHHHHHHHHHhcCCc----EEEEEecHHHHh
Confidence 011222334445555555443221 689999999998
No 382
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=90.15 E-value=0.57 Score=49.14 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=35.7
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYREL 139 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l 139 (931)
..|..+++.+++|+|||..+...+...+.++.+++|++-- +-..+..+..
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e-~~~~~i~~~~ 67 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE-ESRESIIRQA 67 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc-CCHHHHHHHH
Confidence 3578899999999999987765555566678889888853 3344444443
No 383
>PRK07004 replicative DNA helicase; Provisional
Probab=90.12 E-value=1.2 Score=51.90 Aligned_cols=108 Identities=19% Similarity=0.160 Sum_probs=60.1
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHH-HHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeE---EEeccccc--------
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAM-AFRDKQRVIYTSPLKALSNQKYRELHQEFKDVG---LMTGDVTL-------- 155 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~-~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg---~~tGd~~~-------- 155 (931)
+..|+-++|.|.||+|||..++--+.. +...+..|+|.+.- .=..|...++-.....+. +..|..+.
T Consensus 210 ~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlE-M~~~ql~~R~la~~~~v~~~~i~~g~l~~~e~~~~~~ 288 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSME-MPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTH 288 (460)
T ss_pred CCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCC-CCHHHHHHHHHHhhcCCCHHHHhcCCCCHHHHHHHHH
Confidence 456778899999999999876543333 34567888887644 234455555533322111 11222210
Q ss_pred ----CCCCCeeE-----ecHHHHHHHHhcCccccCcccEEEEeccccCCC
Q 002357 156 ----SPNASCLV-----MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 156 ----~~~~~IlV-----~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~ 196 (931)
-.+.++.| .|+..++....+-......+++||+|=.+.|..
T Consensus 289 a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~ 338 (460)
T PRK07004 289 AVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSG 338 (460)
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccC
Confidence 01244554 355555543322211123588999999998863
No 384
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=90.04 E-value=0.78 Score=57.44 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=83.7
Q ss_pred HHHHHHHHhcCCcEEEEcCCCCCcHHHHH---------------------------------HHHHHHHhCCCEEEEEcC
Q 002357 81 QRVSVACLERNESVLVSAHTSAGKTAVAE---------------------------------YAIAMAFRDKQRVIYTSP 127 (931)
Q Consensus 81 Q~~ai~~l~~g~~vlv~apTGsGKTl~~~---------------------------------l~i~~~l~~~~rvl~l~P 127 (931)
|++.+..+..+-|||-...|=-=.|+-.. -||.+-+.+|++|.|+.|
T Consensus 732 ~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~N 811 (1139)
T COG1197 732 HKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVHN 811 (1139)
T ss_pred HHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEec
Confidence 66666666666666665556555555211 244455578999999999
Q ss_pred chhhHHHHHHHHHHhcC--CeEEEecccc-----------cCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccC
Q 002357 128 LKALSNQKYRELHQEFK--DVGLMTGDVT-----------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYM 194 (931)
Q Consensus 128 ~kaL~~Q~~~~l~~~~~--~vg~~tGd~~-----------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l 194 (931)
..+=..++...+++..+ ++++.+|.++ .+.+++|+|||+ .+..| ..+.+...+|++-||++
T Consensus 812 rV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT-----IIEtG-IDIPnANTiIIe~AD~f 885 (1139)
T COG1197 812 RVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT-----IIETG-IDIPNANTIIIERADKF 885 (1139)
T ss_pred chhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee-----eeecC-cCCCCCceEEEeccccc
Confidence 99999999999999999 7899999876 356899999998 34444 45889999999999988
Q ss_pred C
Q 002357 195 K 195 (931)
Q Consensus 195 ~ 195 (931)
+
T Consensus 886 G 886 (1139)
T COG1197 886 G 886 (1139)
T ss_pred c
Confidence 5
No 385
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.02 E-value=1.3 Score=56.70 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=33.6
Q ss_pred CCccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHH
Q 002357 851 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFL 893 (931)
Q Consensus 851 ~~~~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ell 893 (931)
+.+.=.+|+..=+.|.|=.||-+.-.+++++|=-.++++-.=|
T Consensus 839 lt~~e~~v~~~~~~g~~~~~ia~~l~~s~~tv~~h~~~~~~kl 881 (903)
T PRK04841 839 LTQREWQVLGLIYSGYSNEQIAGELDVAATTIKTHIRNLYQKL 881 (903)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 5556667888889999999999999999998877776654433
No 386
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=90.01 E-value=0.39 Score=53.34 Aligned_cols=89 Identities=19% Similarity=0.231 Sum_probs=54.0
Q ss_pred HHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCC-eEEEecccccCCCCCeeEec
Q 002357 87 CLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKD-VGLMTGDVTLSPNASCLVMT 165 (931)
Q Consensus 87 ~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~-vg~~tGd~~~~~~~~IlV~T 165 (931)
++..+.+++|+++||||||... .+++..+....+++.+--+.+|.-. .+++ +.+.+... ..... -.|
T Consensus 156 ~v~~~~nili~G~tgSGKTTll-~aL~~~ip~~~ri~tiEd~~El~l~-------~~~n~~~~~~~~~---~~~~~-~~~ 223 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTFT-NAALREIPAIERLITVEDAREIVLS-------NHPNRVHLLASKG---GQGRA-KVT 223 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHHH-HHHHhhCCCCCeEEEecCCCccccc-------cCCCEEEEEecCC---CCCcC-cCc
Confidence 3467889999999999999764 5666777777888887677666431 1222 22332211 11111 234
Q ss_pred HHHHHHHHhcCccccCcccEEEEeccc
Q 002357 166 TEILRGMLYRGSEVLKEVAWVIFDEIH 192 (931)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vViDEaH 192 (931)
+..+.....+ .+.+++|++|+.
T Consensus 224 ~~~ll~~~LR-----~~PD~IivGEiR 245 (332)
T PRK13900 224 TQDLIEACLR-----LRPDRIIVGELR 245 (332)
T ss_pred HHHHHHHHhc-----cCCCeEEEEecC
Confidence 4444433322 257899999997
No 387
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=90.00 E-value=1.2 Score=46.37 Aligned_cols=98 Identities=16% Similarity=0.207 Sum_probs=56.2
Q ss_pred HHhcCC-cEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHH-HHhcCCeEEEecccccCCCCCeeEe
Q 002357 87 CLERNE-SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYREL-HQEFKDVGLMTGDVTLSPNASCLVM 164 (931)
Q Consensus 87 ~l~~g~-~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l-~~~~~~vg~~tGd~~~~~~~~IlV~ 164 (931)
++..|+ -+.|+++-|||||+..- ++...+..+..++++.|-..++.+-..+. ...+ ..++..++=.-
T Consensus 46 ~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l----------~~~p~~~~~~~ 114 (269)
T COG3267 46 AIADGQGILAVTGEVGSGKTVLRR-ALLASLNEDQVAVVVIDKPTLSDATLLEAIVADL----------ESQPKVNVNAV 114 (269)
T ss_pred HHhcCCceEEEEecCCCchhHHHH-HHHHhcCCCceEEEEecCcchhHHHHHHHHHHHh----------ccCccchhHHH
Confidence 345566 67899999999999877 77777777777776666666665543222 1111 11232222222
Q ss_pred cHHHHHHHHhcCccccCcccEEEEeccccCCC
Q 002357 165 TTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 165 Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~ 196 (931)
+. ...+.|..-....++--.+++||+|.+.+
T Consensus 115 ~e-~~~~~L~al~~~g~r~v~l~vdEah~L~~ 145 (269)
T COG3267 115 LE-QIDRELAALVKKGKRPVVLMVDEAHDLND 145 (269)
T ss_pred HH-HHHHHHHHHHHhCCCCeEEeehhHhhhCh
Confidence 22 22222221111123446789999999874
No 388
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=89.84 E-value=4.1 Score=40.58 Aligned_cols=129 Identities=13% Similarity=0.028 Sum_probs=73.2
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccc--cC-CCCC-eeEecHHH
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVT--LS-PNAS-CLVMTTEI 168 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~--~~-~~~~-IlV~Tpe~ 168 (931)
-+.|--..|=|||.+|+=-++++..+|.||+++.=.|.-..+=-..+.+.++++.+...+.. .. .+.+ . ..+.
T Consensus 23 li~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~~~~~v~~~~~g~~~~~~~~~~~~~---~~~~ 99 (178)
T PRK07414 23 LVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQLGQNLDWVRCDLPRCLDTPHLDES---EKKA 99 (178)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHHhCCCcEEEECCCCCeeeCCCcCHH---HHHH
Confidence 35566677899999998888899999999999987776532222333344455555543322 10 1110 0 0011
Q ss_pred HHHHHhcCcc--ccCcccEEEEeccccCCCCCchH--HHHHHHHhcCCCceEEEeccCCC
Q 002357 169 LRGMLYRGSE--VLKEVAWVIFDEIHYMKDRERGV--VWEESIIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 169 L~~~l~~~~~--~l~~l~~vViDEaH~l~~~~~g~--~~~~ii~~l~~~~q~v~lSAT~~ 224 (931)
..+.+..... .-..+++||+||+=+..+.+.-. .+.+.+..-|...-+|+..-.+|
T Consensus 100 ~~~~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p 159 (178)
T PRK07414 100 LQELWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMP 159 (178)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 1222221111 12578999999998777654321 12233444566667777666655
No 389
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=89.81 E-value=0.72 Score=48.19 Aligned_cols=53 Identities=11% Similarity=0.144 Sum_probs=41.1
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhc
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEF 143 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~ 143 (931)
.|..+++.+++|+|||..+...+...+.++.+++|++-.. -.+|..+.+..+.
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~-~~~~l~~~~~~~~ 67 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE-REERILGYAKSKG 67 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHHcC
Confidence 4678899999999999887777777777899999987764 4666666665553
No 390
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.76 E-value=1.2 Score=53.70 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=16.4
Q ss_pred CcEEEEcCCCCCcHHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~ 111 (931)
..+|+.||.|+|||.++...
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~l 58 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARIL 58 (620)
T ss_pred ceEEEECCCCCChHHHHHHH
Confidence 46799999999999887443
No 391
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.72 E-value=0.68 Score=49.73 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHh--cCCcEEEEcCCCCCcHHHHHHHHHHHHh-CCCEEEEEcCchh
Q 002357 77 LDPFQRVSVACLE--RNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKA 130 (931)
Q Consensus 77 l~~~Q~~ai~~l~--~g~~vlv~apTGsGKTl~~~l~i~~~l~-~~~rvl~l~P~ka 130 (931)
+.+-|.+.+..+. .+..+++++|||||||... .+++..+. .+.+++.+--..+
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~~~~~~iitiEdp~E 119 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELNTPEKNIITVEDPVE 119 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhCCCCCeEEEECCCce
Confidence 4677888886553 3446899999999999865 44555554 3556666654444
No 392
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=89.69 E-value=2.9 Score=46.16 Aligned_cols=58 Identities=10% Similarity=0.173 Sum_probs=33.4
Q ss_pred CeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc--CCCceEEEeccC
Q 002357 160 SCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL--PPAIKMVFLSAT 222 (931)
Q Consensus 160 ~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l--~~~~q~v~lSAT 222 (931)
.|-|-....+.+.++..+ ......++|||++|.|.. .....++..+ |++..+|++|..
T Consensus 103 ~I~id~ir~i~~~l~~~p-~~~~~kVvII~~ae~m~~----~aaNaLLK~LEEPp~~~fILi~~~ 162 (314)
T PRK07399 103 QIRLEQIREIKRFLSRPP-LEAPRKVVVIEDAETMNE----AAANALLKTLEEPGNGTLILIAPS 162 (314)
T ss_pred cCcHHHHHHHHHHHccCc-ccCCceEEEEEchhhcCH----HHHHHHHHHHhCCCCCeEEEEECC
Confidence 343444444444455433 346789999999999974 2344444444 335556665543
No 393
>PRK10436 hypothetical protein; Provisional
Probab=89.69 E-value=0.64 Score=53.90 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHH--hcCCcEEEEcCCCCCcHHHHHHHHHHHHhC-CCEEEE
Q 002357 77 LDPFQRVSVACL--ERNESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIY 124 (931)
Q Consensus 77 l~~~Q~~ai~~l--~~g~~vlv~apTGsGKTl~~~l~i~~~l~~-~~rvl~ 124 (931)
+.+-|.+.+..+ ..+.-++|++|||||||... ++++..+.. +.+++-
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~~~~~~i~T 251 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLNTAQINICS 251 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhCCCCCEEEE
Confidence 566777777665 34557899999999999864 566666543 344443
No 394
>PRK05748 replicative DNA helicase; Provisional
Probab=89.57 E-value=1.3 Score=51.57 Aligned_cols=107 Identities=19% Similarity=0.194 Sum_probs=61.4
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHH-HhCCCEEEEEcCchhhHHHHHHHHHHhcCCeE---EEeccccc--------
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPLKALSNQKYRELHQEFKDVG---LMTGDVTL-------- 155 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~-l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg---~~tGd~~~-------- 155 (931)
+..|.-++|.|+||+|||..++-.+... ...+..|+|++.- .=..|+..++....+.+. +..|..+.
T Consensus 200 ~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlE-ms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~ 278 (448)
T PRK05748 200 LQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLE-MGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTI 278 (448)
T ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCC-CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHH
Confidence 3556789999999999998776555544 3557888887654 345566666644333211 11222210
Q ss_pred ----CCCCCeeE-----ecHHHHHHHHhcCccccCcccEEEEeccccCC
Q 002357 156 ----SPNASCLV-----MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 156 ----~~~~~IlV-----~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
-.+.++.| .|++.++..+.+-.....++++||||=.|.|.
T Consensus 279 a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 279 AMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 01223433 25555554443221111268899999999885
No 395
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=89.55 E-value=1.5 Score=49.95 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCCcHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l 110 (931)
+.+++.||.|+|||..+..
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~ 55 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARA 55 (394)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4589999999999987643
No 396
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=89.54 E-value=0.67 Score=51.60 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCCcHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (931)
.++++.+|+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 579999999999998765
No 397
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=89.47 E-value=2 Score=53.01 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=22.0
Q ss_pred HHHHHHHh--cCCcEEEEcCCCCCcHHHHHHHH
Q 002357 82 RVSVACLE--RNESVLVSAHTSAGKTAVAEYAI 112 (931)
Q Consensus 82 ~~ai~~l~--~g~~vlv~apTGsGKTl~~~l~i 112 (931)
.+.+..+. ...++++.+|+|+|||.++....
T Consensus 196 ~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la 228 (758)
T PRK11034 196 ERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_pred HHHHHHHhccCCCCeEEECCCCCCHHHHHHHHH
Confidence 33444443 34689999999999999875543
No 398
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=89.46 E-value=2.6 Score=49.48 Aligned_cols=136 Identities=16% Similarity=0.219 Sum_probs=82.1
Q ss_pred CcEEEEcCCCCCcHHHH--HHHHHHHHhCCCEEEEEcCchhhHHHHHHHH----HHhcCC--eEEEeccc-cc---CCCC
Q 002357 92 ESVLVSAHTSAGKTAVA--EYAIAMAFRDKQRVIYTSPLKALSNQKYREL----HQEFKD--VGLMTGDV-TL---SPNA 159 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~--~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l----~~~~~~--vg~~tGd~-~~---~~~~ 159 (931)
+-.+..-|=--|||..- +++++..--.|-++.|++..|.-++-+++++ +.+|+. +-...|++ .. +..+
T Consensus 203 kaTVFLVPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI~~s~pg~Ks 282 (668)
T PHA03372 203 KATVFLVPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVISIDHRGAKS 282 (668)
T ss_pred cceEEEecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEEEEecCCCcc
Confidence 44566779999999643 3333333346899999999999888877664 566772 21111111 00 1112
Q ss_pred CeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc-CCCceEEEeccCCCChHHHHHHHHhhcC
Q 002357 160 SCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL-PPAIKMVFLSATMSNATQFAEWICHLHK 238 (931)
Q Consensus 160 ~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l-~~~~q~v~lSAT~~n~~e~~~~l~~~~~ 238 (931)
.++.+| ..+.+...=++++++++||||.+. ...+..++-.+ .++.++|+.|-|-+. .+-..|+....+
T Consensus 283 t~~fas------c~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~Nsg-~~sTSfL~~Lk~ 351 (668)
T PHA03372 283 TALFAS------CYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISSTNTT-NDATCFLTKLNN 351 (668)
T ss_pred eeeehh------hccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCCCCC-CccchHHHhccC
Confidence 222222 112223334578999999999997 44566666654 478899999988421 223377766543
No 399
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=89.39 E-value=0.47 Score=50.87 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=31.3
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcC
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P 127 (931)
.|.-++|++++|+|||..+.-.+.....++.+++|++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 46778999999999999877666666677889999884
No 400
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=89.38 E-value=7.7 Score=44.93 Aligned_cols=176 Identities=18% Similarity=0.162 Sum_probs=109.2
Q ss_pred HHHHHHHHHhhcCCccCCC---ccchhhhhhhcccCCchhHHHHHHhhCCCCCCCHHHHHHHhhccccccCCccc-----
Q 002357 738 ELKNRSRVLKKLGHIDADG---VVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQ----- 809 (931)
Q Consensus 738 e~~~~~~vL~~lgyid~~~---~vt~kGrvA~ei~s~~eLlltEll~~g~f~~l~p~eiaAllS~~v~~~~~~~~----- 809 (931)
+.++.+.-|+.+|||+.+| .+|-.||+++--. =.---+|.|.+|+..+++|=.||+-|.-|-...=++.-
T Consensus 618 ~~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~F--l~p~~a~~Ir~~v~~~~~pl~i~~~l~pfE~ayls~~l~r~i~ 695 (830)
T COG1202 618 DPKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSF--LGPSEAEFIREGVLASMDPLRIAAELEPFENAYLSGFLKRAIE 695 (830)
T ss_pred CHHHHHHHHHhcCCeeccCCEeeeccccceeEEee--cCchHHHHHHHhhhccCChHhHhhccccccccccChHHHHHHH
Confidence 5788899999999999765 4899999886433 24456899999999999999999988877432111100
Q ss_pred ----ccccHHHHH-HHHHHHHHH-----------HHHHHHHHHc--CCCCChhhhhhccCCccHHH-HHHHhhCCCCHHH
Q 002357 810 ----INLRMELAK-PLQQLQESA-----------RKIAEIQNEC--KLEVNVDEYVESTVRPFLMD-VIYCWSKGATFAE 870 (931)
Q Consensus 810 ----~~~~~~l~~-~~~~l~~~~-----------~~i~~~~~~~--~~~~~~~~~~~~~~~~~l~~-~v~~Wa~G~~f~~ 870 (931)
...|.++.+ ++..+.+-. +++..++.++ ...-+..++..+ -+.+ ++..--.|.+-.+
T Consensus 696 ~~~~~~vpsr~f~~a~~~I~~e~d~ii~ld~k~~e~l~~i~~df~~c~c~d~ce~~~~----~lse~ii~lR~~gk~p~~ 771 (830)
T COG1202 696 SALRGRVPSRLFDSALLDILEEGDKIIELDPKLKEKLLLIYMDFLNCTCRDCCECAEQ----RLSEKIIELRIEGKDPSQ 771 (830)
T ss_pred HHhcCCCchhhhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHHHhcCchhhhHHHHHH----HHHHHHHHHHhcCCCHHH
Confidence 011222111 222222111 1222222211 001111122111 1111 3444568888888
Q ss_pred HHhhc------CCCcchHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhh
Q 002357 871 VIQMT------DIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESL 919 (931)
Q Consensus 871 i~~~t------~~~EG~ivR~~rRl~ell~qi~~aa~~iG~~~L~~k~~~a~~~i 919 (931)
|-+.- ..+.|||.-|+-.+..+|.-+...|++.+-++.++.+......|
T Consensus 772 Isr~l~~~Ygi~aYpgDif~wLd~~vr~Lea~~rIArvf~kr~~~~ea~~lk~~i 826 (830)
T COG1202 772 ISRILEKRYGIQAYPGDIFTWLDTLVRLLEAIGRIARVFKKREVEAEAKALKKKI 826 (830)
T ss_pred HHHHHHHhhCeeecChhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 87762 47899999999999999999999999888888887666554443
No 401
>PRK08760 replicative DNA helicase; Provisional
Probab=89.15 E-value=1.7 Score=50.86 Aligned_cols=106 Identities=20% Similarity=0.245 Sum_probs=61.5
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHH-HhCCCEEEEEcCchhhHHHHHHHHHHhcCCeE---EEeccccc--------
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPLKALSNQKYRELHQEFKDVG---LMTGDVTL-------- 155 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~-l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg---~~tGd~~~-------- 155 (931)
+..|.-++|.|.||.|||..++-.+... ...+.+|+|.+.-- =..|+..++......+. +..|..+.
T Consensus 226 ~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEM-s~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~ 304 (476)
T PRK08760 226 LQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEM-SASQLAMRLISSNGRINAQRLRTGALEDEDWARVTG 304 (476)
T ss_pred CCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccC-CHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHH
Confidence 4567788999999999998776554444 35577888886653 34566666655433221 12222110
Q ss_pred ----CCCCCeeE-----ecHHHHHHHHhcCccccCcccEEEEeccccCC
Q 002357 156 ----SPNASCLV-----MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 156 ----~~~~~IlV-----~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
-.+.++.| .|++.++..+.+-.. -..+++||||=.+.|.
T Consensus 305 a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 305 AIKMLKETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 01123333 255666554432211 1358999999999885
No 402
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.13 E-value=1.6 Score=54.29 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=19.1
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAM 114 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~ 114 (931)
..|+++.+|+|+|||.++......
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999987544443
No 403
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.10 E-value=10 Score=44.17 Aligned_cols=114 Identities=21% Similarity=0.235 Sum_probs=56.2
Q ss_pred CCcEEEEcCCCCCcHHHHH-HHHHHHHhCCC-EEEEE-cCc-hhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecH
Q 002357 91 NESVLVSAHTSAGKTAVAE-YAIAMAFRDKQ-RVIYT-SPL-KALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT 166 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~-l~i~~~l~~~~-rvl~l-~P~-kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp 166 (931)
|.-+.+.+|||+|||.... ++.......|. +|.++ +-+ +.=+.++.+.|.+.++ +.. ..+.++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilG-Vpv------------~~~~~~ 322 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILG-VPV------------HAVKDA 322 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhC-CCe------------eccCCc
Confidence 4567899999999998654 33333344443 55333 222 3333344444444432 100 111122
Q ss_pred HHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcC----CCceEEEeccCCC
Q 002357 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP----PAIKMVFLSATMS 224 (931)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~----~~~q~v~lSAT~~ 224 (931)
..+...+ ..+.+.+++++|.+=+... .....+.+..+. +.-.++.++||..
T Consensus 323 ~Dl~~aL----~~L~d~d~VLIDTaGr~~~---d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 323 ADLRLAL----SELRNKHIVLIDTIGMSQR---DRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred hhHHHHH----HhccCCCeEEeCCCCcChh---hHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 2222222 2255678999999643321 112223333322 2236788899974
No 404
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=89.08 E-value=0.33 Score=51.46 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=21.3
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHHH
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMAF 116 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~l 116 (931)
+.+|+.+++.+|.|+|||..+ -.++..+
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLl-r~I~n~l 40 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLL-QSIANAI 40 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHH-HHHHhcc
Confidence 478999999999999999754 3344433
No 405
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=89.00 E-value=4.6 Score=45.36 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=69.1
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHH--hCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAF--RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l--~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (931)
.+.+-+.|+.|.|||...-+. ...+ ..+.|+ +.-+-+.++++++.+.- |. .+- -+..
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f-~~~lp~~~k~R~----HFh~Fm~~vh~~l~~~~-------~~------~~~---l~~v 120 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLF-YDSLPIKRKRRV----HFHEFMLDVHSRLHQLR-------GQ------DDP---LPQV 120 (362)
T ss_pred CceEEEECCCCCchhHHHHHH-HHhCCccccccc----cccHHHHHHHHHHHHHh-------CC------Ccc---HHHH
Confidence 467899999999999864332 2222 123332 33566777777776654 11 110 1111
Q ss_pred HHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHh-cCCCceEEEeccCCCCh--------HHHHHHHHhhcC
Q 002357 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF-LPPAIKMVFLSATMSNA--------TQFAEWICHLHK 238 (931)
Q Consensus 169 L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~-l~~~~q~v~lSAT~~n~--------~e~~~~l~~~~~ 238 (931)
.. ...++..++.|||.|- .|..-...+..++.. +...+-+|..|-+.|+. ..|.-+|..+..
T Consensus 121 a~-------~l~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~ 191 (362)
T PF03969_consen 121 AD-------ELAKESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKR 191 (362)
T ss_pred HH-------HHHhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHh
Confidence 11 1244677999999993 333224444555543 46788899999998733 346666665543
No 406
>CHL00176 ftsH cell division protein; Validated
Probab=88.94 E-value=1.3 Score=53.56 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=16.2
Q ss_pred CcEEEEcCCCCCcHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l 110 (931)
+.+++.+|+|+|||..+-.
T Consensus 217 ~gVLL~GPpGTGKT~LAra 235 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKA 235 (638)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4699999999999997643
No 407
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=88.87 E-value=2.4 Score=51.51 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhcCCccCCC-ccchhhhhhhcccCCchhHHHHHHhhCC
Q 002357 735 FRDELKNRSRVLKKLGHIDADG-VVQLKGRAACLIDTGDELLVTELMFNGT 784 (931)
Q Consensus 735 ~~~e~~~~~~vL~~lgyid~~~-~vt~kGrvA~ei~s~~eLlltEll~~g~ 784 (931)
.-++|.....+|+.+..+-.++ -|.+ -| =..+.+.++..++-++-
T Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~fi~~----~~-~~~~~~~~~~~~~~~~~ 648 (725)
T PRK07133 603 YDVEFMEIAHFLKDLKILASSDNFILF----SS-KRDEIDELIIKLNKNNY 648 (725)
T ss_pred ccHHHHHHHHHHhhhheeeecCceEEE----ec-CccchHHHHHHHHHhhH
Confidence 3478999999999999886543 2221 11 00245667777776654
No 408
>PHA02542 41 41 helicase; Provisional
Probab=88.80 E-value=2.2 Score=49.78 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=29.6
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
..|.-++++|+||.|||..++-.+......|.+|+|++
T Consensus 188 ~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fS 225 (473)
T PHA02542 188 ERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYIS 225 (473)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEe
Confidence 34567889999999999987765555556788888886
No 409
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.62 E-value=0.48 Score=51.15 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=32.8
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCC-CEEEEEcCchhhH
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDK-QRVIYTSPLKALS 132 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~-~rvl~l~P~kaL~ 132 (931)
..+.+++++|+||||||... .+++..+... .+++++-.+.++-
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHTTTSEEEEEESSS-S-
T ss_pred ccceEEEEECCCccccchHH-HHHhhhccccccceEEecccccee
Confidence 55789999999999999875 5556666666 8888888776663
No 410
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=88.60 E-value=1.6 Score=55.24 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCCCcHHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l 110 (931)
..+.++.||+|+|||.++..
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred CCceEEEcCCCCCHHHHHHH
Confidence 46899999999999998754
No 411
>PF12846 AAA_10: AAA-like domain
Probab=88.60 E-value=0.63 Score=50.79 Aligned_cols=43 Identities=26% Similarity=0.344 Sum_probs=35.2
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHH
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSN 133 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~ 133 (931)
+.++++.|+||+|||......+...+..+..++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCchHHH
Confidence 3679999999999999888777777888999999877755544
No 412
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=88.58 E-value=0.72 Score=50.65 Aligned_cols=45 Identities=27% Similarity=0.250 Sum_probs=37.9
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQ 134 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q 134 (931)
.|.-+.+.+|+|+|||..++..+......+.+++|+..-.++..+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV 98 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH
Confidence 456788999999999999888888888889999999887766665
No 413
>PRK08840 replicative DNA helicase; Provisional
Probab=88.52 E-value=2.1 Score=49.80 Aligned_cols=107 Identities=20% Similarity=0.242 Sum_probs=59.1
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHH-HhCCCEEEEEcCchhhHHHHHHHHHHhcCCe---EEEecccc---------
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPLKALSNQKYRELHQEFKDV---GLMTGDVT--------- 154 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~-l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~v---g~~tGd~~--------- 154 (931)
+..|+-+++.|.||.|||..++-.+... ...+..|+|.+.-- =..|+..++-.....+ .+..|..+
T Consensus 214 ~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEM-s~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~ 292 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEM-PAEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISS 292 (464)
T ss_pred CCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccC-CHHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHH
Confidence 4567788999999999998765433333 35678888887653 3555555554433211 11112111
Q ss_pred ----cCCCCCeeE-----ecHHHHHHHHhcCccccCcccEEEEeccccCC
Q 002357 155 ----LSPNASCLV-----MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 155 ----~~~~~~IlV-----~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
+....++.| .|...++....+-......+++||||=.|.|.
T Consensus 293 a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 293 TMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 101223433 24444443332211111258999999999885
No 414
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=88.41 E-value=1.4 Score=50.27 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCCcHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~ 109 (931)
...+++.||+|+|||..+-
T Consensus 165 p~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred CCceEEECCCCCChHHHHH
Confidence 3579999999999998763
No 415
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=88.40 E-value=1.5 Score=44.95 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCCcHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (931)
-++++++|+|+|||.+..
T Consensus 49 P~liisGpPG~GKTTsi~ 66 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSIL 66 (333)
T ss_pred CceEeeCCCCCchhhHHH
Confidence 489999999999999864
No 416
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=88.37 E-value=0.94 Score=46.71 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=32.7
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCch
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLK 129 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~k 129 (931)
.|.-+.+.+|+|+|||..+...+......+.+++|+.-..
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 4567899999999999988776666667788999988764
No 417
>PRK09087 hypothetical protein; Validated
Probab=88.36 E-value=1.8 Score=45.34 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=14.6
Q ss_pred cEEEEcCCCCCcHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~ 109 (931)
.+++.+|+|+|||-...
T Consensus 46 ~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 46 VVVLAGPVGSGKTHLAS 62 (226)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48999999999998654
No 418
>PRK12608 transcription termination factor Rho; Provisional
Probab=88.22 E-value=0.73 Score=51.35 Aligned_cols=39 Identities=28% Similarity=0.294 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHH---hcCCcEEEEcCCCCCcHHHHHHHHHHHH
Q 002357 77 LDPFQRVSVACL---ERNESVLVSAHTSAGKTAVAEYAIAMAF 116 (931)
Q Consensus 77 l~~~Q~~ai~~l---~~g~~vlv~apTGsGKTl~~~l~i~~~l 116 (931)
+.+.-.++|+.+ -+|+.+++.||.|+|||.+... ++..+
T Consensus 116 ~~~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~-la~~i 157 (380)
T PRK12608 116 SDDLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQ-IAAAV 157 (380)
T ss_pred CcchhHhhhhheeecCCCceEEEECCCCCCHHHHHHH-HHHHH
Confidence 335566788776 5899999999999999987543 33443
No 419
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=88.21 E-value=1.3 Score=44.45 Aligned_cols=37 Identities=14% Similarity=0.077 Sum_probs=28.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchh
Q 002357 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKA 130 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~ka 130 (931)
.++.+|.+||||.-.+-.+......+.+++++-|...
T Consensus 4 ~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~D 40 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAID 40 (176)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEESTS
T ss_pred EEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence 5788999999998766566666678899999999754
No 420
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.08 E-value=2.6 Score=48.26 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=24.0
Q ss_pred ccCcccEEEEeccccCCCCCchHHHHHHHHhcC---CCceEEEec
Q 002357 179 VLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP---PAIKMVFLS 220 (931)
Q Consensus 179 ~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~---~~~q~v~lS 220 (931)
...+..+||+||+|.+.. ..++.++..+. +...+|+.+
T Consensus 124 ~~~~~kvvIIdea~~l~~----~~~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 124 QKGRYRVYIIDEVHMLSI----AAFNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred hcCCeEEEEEeChhhCCH----HHHHHHHHHHhcCCCCeEEEEEe
Confidence 456789999999999973 34455555443 344444433
No 421
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=88.07 E-value=1.9 Score=43.58 Aligned_cols=110 Identities=14% Similarity=0.171 Sum_probs=52.9
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCC---CEEEEEcCchhhHHHHHHHHHH-hcCCeEEEecccccCCCCCeeEecHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDK---QRVIYTSPLKALSNQKYRELHQ-EFKDVGLMTGDVTLSPNASCLVMTTE 167 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~---~rvl~l~P~kaL~~Q~~~~l~~-~~~~vg~~tGd~~~~~~~~IlV~Tpe 167 (931)
+.+++.+|+|+|||..+...+...+... ......++. +..+.. .++++..+..+.. . .+.+
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~-------c~~~~~~~~~d~~~~~~~~~-----~---~~~~ 79 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPS-------CRLIEAGNHPDLHRLEPEGQ-----S---IKVD 79 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHH-------HHHHHcCCCCcEEEeccccC-----c---CCHH
Confidence 4588999999999987654433333211 110011111 111111 1223333221110 1 2335
Q ss_pred HHHHHHhcC--ccccCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEec
Q 002357 168 ILRGMLYRG--SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLS 220 (931)
Q Consensus 168 ~L~~~l~~~--~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~lS 220 (931)
.++.++..- ........+||+||+|.+.. ...+.++..+ +++.-+|+++
T Consensus 80 ~i~~i~~~~~~~~~~~~~kviiide~~~l~~----~~~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 80 QVRELVEFLSRTPQESGRRVVIIEDAERMNE----AAANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred HHHHHHHHHccCcccCCeEEEEEechhhhCH----HHHHHHHHHhcCCCCCeEEEEEE
Confidence 554433221 12356788999999999974 2344444444 3344455543
No 422
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.03 E-value=0.81 Score=53.83 Aligned_cols=60 Identities=20% Similarity=0.186 Sum_probs=46.8
Q ss_pred HHHHHH-----hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhc
Q 002357 83 VSVACL-----ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEF 143 (931)
Q Consensus 83 ~ai~~l-----~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~ 143 (931)
..++.+ ..|..++|.+|+|+|||+.+..-+....++|.+++|++ .-+=..|..++...+.
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 345555 34578999999999999988877777888899999988 4567778777776653
No 423
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=87.98 E-value=1.8 Score=51.69 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=19.3
Q ss_pred cCcccEEEEeccccCCCCCchHHHHHHHHhc
Q 002357 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFL 210 (931)
Q Consensus 180 l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l 210 (931)
.....++||||+|+|.. ..+..++..+
T Consensus 117 ~~~~kViIIDE~~~Lt~----~a~naLLKtL 143 (559)
T PRK05563 117 EAKYKVYIIDEVHMLST----GAFNALLKTL 143 (559)
T ss_pred cCCeEEEEEECcccCCH----HHHHHHHHHh
Confidence 45788999999999973 3455555544
No 424
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=87.94 E-value=2.6 Score=41.84 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=33.7
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHH
Q 002357 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQ 141 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~ 141 (931)
++|.+++|||||..++-.+.. .+.+++|++-.+++-..+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCcCCHHHHHHHHH
Confidence 689999999999877654433 577999998888876665555444
No 425
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=87.94 E-value=2.3 Score=47.37 Aligned_cols=133 Identities=14% Similarity=0.094 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHH----hcC---CcEEEEcCCCCCcHHHHHHHHHHHHhC-CCEEEEEcCchhhHHHHHHHHHH-hcCCeE
Q 002357 77 LDPFQRVSVACL----ERN---ESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSPLKALSNQKYRELHQ-EFKDVG 147 (931)
Q Consensus 77 l~~~Q~~ai~~l----~~g---~~vlv~apTGsGKTl~~~l~i~~~l~~-~~rvl~l~P~kaL~~Q~~~~l~~-~~~~vg 147 (931)
++|||..++..+ .+| +-.++.||.|.||+..+. +++..+.- +...---|-. | .-++.+.. ..+++.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~-~~A~~LlC~~~~~~~~Cg~---C-~sC~~~~~g~HPD~~ 77 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIY-ALSRWLMCQQPQGHKSCGH---C-RGCQLMQAGTHPDYY 77 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHH-HHHHHHcCCCCCCCCCCCC---C-HHHHHHHcCCCCCEE
Confidence 467777777655 343 367899999999998764 33333311 1000000000 0 01112211 233555
Q ss_pred EEecccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcC---CCceEEEeccC
Q 002357 148 LMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP---PAIKMVFLSAT 222 (931)
Q Consensus 148 ~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~---~~~q~v~lSAT 222 (931)
.+..+.. ...|-|-....+...++..+ .....+++|||+||+|.. .....++..+. .+.-++++|.-
T Consensus 78 ~i~p~~~---~~~I~idqiR~l~~~~~~~~-~~g~~kV~iI~~ae~m~~----~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 78 TLTPEKG---KSSLGVDAVREVTEKLYEHA-RLGGAKVVWLPDAALLTD----AAANALLKTLEEPPENTWFFLACRE 147 (334)
T ss_pred EEecccc---cccCCHHHHHHHHHHHhhcc-ccCCceEEEEcchHhhCH----HHHHHHHHHhcCCCCCeEEEEEECC
Confidence 5543211 12233333333333344333 345789999999999973 34555566552 34445555443
No 426
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=87.93 E-value=1.4 Score=55.09 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=19.0
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAF 116 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l 116 (931)
++..+++.+|+|+|||..+ -+++..+
T Consensus 346 ~~~~lll~GppG~GKT~lA-k~iA~~l 371 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLG-KSIAKAL 371 (775)
T ss_pred CCceEEEECCCCCCHHHHH-HHHHHHh
Confidence 3567999999999999876 3344443
No 427
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=87.90 E-value=0.92 Score=54.33 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHh--cCCcEEEEcCCCCCcHHHHHHHHHHHHhC
Q 002357 77 LDPFQRVSVACLE--RNESVLVSAHTSAGKTAVAEYAIAMAFRD 118 (931)
Q Consensus 77 l~~~Q~~ai~~l~--~g~~vlv~apTGsGKTl~~~l~i~~~l~~ 118 (931)
+.+-|.+.+..+. .+..+++++|||||||... ++++..+.+
T Consensus 300 ~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~~ 342 (564)
T TIGR02538 300 FEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILNT 342 (564)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhCC
Confidence 4566777776553 3456889999999999874 566666643
No 428
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=87.90 E-value=2 Score=49.94 Aligned_cols=92 Identities=11% Similarity=0.073 Sum_probs=56.4
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (931)
..|.-+++.+++|+|||..+...+.....++.+++|++.- +-..|+..+...+.-. .....+-.. .+.+.
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E-Es~~qi~~ra~rlg~~----~~~l~~~~e-----~~~~~ 161 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE-ESLQQIKMRAIRLGLP----EPNLYVLSE-----TNWEQ 161 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc-CCHHHHHHHHHHcCCC----hHHeEEcCC-----CCHHH
Confidence 3467889999999999998776656555667899999875 3445655554443211 000000000 13355
Q ss_pred HHHHHhcCccccCcccEEEEeccccCC
Q 002357 169 LRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 169 L~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
+...+.. .+.++||+|.+..+.
T Consensus 162 I~~~i~~-----~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 162 ICANIEE-----ENPQACVIDSIQTLY 183 (454)
T ss_pred HHHHHHh-----cCCcEEEEecchhhc
Confidence 5544432 256899999998764
No 429
>PRK09165 replicative DNA helicase; Provisional
Probab=87.80 E-value=2 Score=50.54 Aligned_cols=107 Identities=16% Similarity=0.191 Sum_probs=58.7
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHHH-h--------------CCCEEEEEcCchhhHHHHHHHHHHhcCCe---EEE
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMAF-R--------------DKQRVIYTSPLKALSNQKYRELHQEFKDV---GLM 149 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~l-~--------------~~~rvl~l~P~kaL~~Q~~~~l~~~~~~v---g~~ 149 (931)
+..|.-++|.|+||.|||..++-.+.... . .+.+|+|++.- .=..|...++......+ .+.
T Consensus 214 ~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlE-Ms~~ql~~R~la~~s~v~~~~i~ 292 (497)
T PRK09165 214 LHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLE-MSAEQLATRILSEQSEISSSKIR 292 (497)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCc-CCHHHHHHHHHHHhcCCCHHHHh
Confidence 35567789999999999987654333322 1 25788888654 33456666554443221 112
Q ss_pred eccccc------------CCCCCeeE-----ecHHHHHHHHhcCccccCcccEEEEeccccCCC
Q 002357 150 TGDVTL------------SPNASCLV-----MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 150 tGd~~~------------~~~~~IlV-----~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~ 196 (931)
.|..+- -...++.| .|++.++..+.+-.. -..+++||||=.|.|..
T Consensus 293 ~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 293 RGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIRG 355 (497)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhccC
Confidence 222210 01123333 255555554432211 13589999999998863
No 430
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=87.79 E-value=0.67 Score=48.22 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=30.5
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
.|.-+++.+++|+|||..+...+......+.+++|+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3567889999999999988776666667788999984
No 431
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.65 E-value=0.33 Score=51.84 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=17.6
Q ss_pred hcCCcEEEEcCCCCCcHHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~ 109 (931)
+...|+++.+|||||||+.|.
T Consensus 95 L~KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eeeccEEEECCCCCcHHHHHH
Confidence 345689999999999999764
No 432
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=87.65 E-value=2.9 Score=50.04 Aligned_cols=86 Identities=21% Similarity=0.251 Sum_probs=45.3
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC-CeEEEecccccCCCCCeeEecHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDVTLSPNASCLVMTTE 167 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~vg~~tGd~~~~~~~~IlV~Tpe 167 (931)
..+..|++.++||+|||.++-.. .........-++.+...++...... ...|+ .-|.++|..... ++
T Consensus 217 ~~~~pvli~Ge~GtGK~~lA~~i-h~~s~r~~~pfv~i~c~~~~~~~~~--~~lfg~~~~~~~~~~~~~---------~g 284 (534)
T TIGR01817 217 RSNSTVLLRGESGTGKELIAKAI-HYLSPRAKRPFVKVNCAALSETLLE--SELFGHEKGAFTGAIAQR---------KG 284 (534)
T ss_pred CcCCCEEEECCCCccHHHHHHHH-HHhCCCCCCCeEEeecCCCCHHHHH--HHHcCCCCCccCCCCcCC---------CC
Confidence 56678999999999999987433 3332222223333333344333222 22344 223334332110 11
Q ss_pred HHHHHHhcCccccCcccEEEEeccccCC
Q 002357 168 ILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 168 ~L~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
.....+=+.++|||+|.+.
T Consensus 285 ---------~~~~a~~GtL~ldei~~L~ 303 (534)
T TIGR01817 285 ---------RFELADGGTLFLDEIGEIS 303 (534)
T ss_pred ---------cccccCCCeEEEechhhCC
Confidence 1112234789999999987
No 433
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=87.61 E-value=0.52 Score=42.55 Aligned_cols=56 Identities=30% Similarity=0.426 Sum_probs=34.6
Q ss_pred HHHHhhcCCccCCCccchhhhhhhcccCCchhHHHHHHhhCCCCCCCH-HHHHHHhhc
Q 002357 743 SRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH-HQVAALASC 799 (931)
Q Consensus 743 ~~vL~~lgyid~~~~vt~kGrvA~ei~s~~eLlltEll~~g~f~~l~p-~eiaAllS~ 799 (931)
.+.|..||.||+++.+|.-|+.++.+-. +.-+--.+++...|.-+++ .-|||+||+
T Consensus 3 ~~~L~~Lgald~~~~lT~lG~~~~~lPl-~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~ 59 (102)
T PF04408_consen 3 LELLKSLGALDENGNLTPLGRKMSQLPL-DPRLAKMLLYGIQFGCLDEALIIAAILSV 59 (102)
T ss_dssp HHHHHHTTSB-TTS-B-HHHHHHTTSSS--HHHHHHHHHHHHCT-HHHHHHHHHHHTS
T ss_pred HHHHHHCCCCCCCCCcCHHHHHHHHCCC-chHhHhHhhhccccccHHHHHHHHHHHcC
Confidence 4679999999999999999999999986 4444444455555555433 233444443
No 434
>PRK10865 protein disaggregation chaperone; Provisional
Probab=87.53 E-value=2 Score=54.13 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=17.9
Q ss_pred CCcEEEEcCCCCCcHHHHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEYAI 112 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i 112 (931)
..++++.+|+|+|||.++....
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~la 220 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGLA 220 (857)
T ss_pred cCceEEECCCCCCHHHHHHHHH
Confidence 3589999999999999875433
No 435
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=87.53 E-value=1.5 Score=52.18 Aligned_cols=115 Identities=14% Similarity=0.174 Sum_probs=73.2
Q ss_pred hhhccCCCCCCHHHHHHHHHH--------hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHH
Q 002357 68 EMAKTYSFELDPFQRVSVACL--------ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYREL 139 (931)
Q Consensus 68 ~~~~~~~f~l~~~Q~~ai~~l--------~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l 139 (931)
.....-.|-|..+-.+.++.+ .+|.-+++.+|+|.|||-. +..+++.+
T Consensus 319 ~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSL------------------------gkSIA~al 374 (782)
T COG0466 319 KILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSL------------------------GKSIAKAL 374 (782)
T ss_pred HHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhH------------------------HHHHHHHh
Confidence 334445677888888887765 3455678899999999964 34444444
Q ss_pred HHhcCCeEEEecccc----cCCCCCeeE-ecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcC
Q 002357 140 HQEFKDVGLMTGDVT----LSPNASCLV-MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP 211 (931)
Q Consensus 140 ~~~~~~vg~~tGd~~----~~~~~~IlV-~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~ 211 (931)
...|- -+.-||+. +...-.-.| +-|+++..-+.+.... =-++.+||+|.|....+|.--..++.-|.
T Consensus 375 ~Rkfv--R~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~---NPv~LLDEIDKm~ss~rGDPaSALLEVLD 446 (782)
T COG0466 375 GRKFV--RISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVK---NPVFLLDEIDKMGSSFRGDPASALLEVLD 446 (782)
T ss_pred CCCEE--EEecCccccHHHhccccccccccCChHHHHHHHHhCCc---CCeEEeechhhccCCCCCChHHHHHhhcC
Confidence 44442 22233332 333323333 5688888766543321 23789999999998888888777776653
No 436
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=87.42 E-value=2.9 Score=46.36 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHh--cC---CcEEEEcCCCCCcHHHHHHH
Q 002357 78 DPFQRVSVACLE--RN---ESVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 78 ~~~Q~~ai~~l~--~g---~~vlv~apTGsGKTl~~~l~ 111 (931)
+|||..++..+. .+ +..++.||.|.|||..+...
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~ 41 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFA 41 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHH
Confidence 578888887764 22 35889999999999877443
No 437
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=87.37 E-value=1.3 Score=47.59 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=27.6
Q ss_pred HHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE
Q 002357 83 VSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (931)
Q Consensus 83 ~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l 125 (931)
+++..+..|.++++.+|+|+|||.++... ...+ +..++.+
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~l-a~~l--g~~~~~i 52 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMHV-ARKR--DRPVMLI 52 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHHH-HHHh--CCCEEEE
Confidence 34455678899999999999999987543 3333 4444444
No 438
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=87.22 E-value=0.65 Score=54.58 Aligned_cols=56 Identities=21% Similarity=0.133 Sum_probs=43.9
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEE
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLM 149 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~ 149 (931)
.+++|.||||||||..+.+|-+. ..+..+|++-|--+|.......+++.+.+|-++
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll--~~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~vl 100 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL--NYPGSMIVTDPKGELYEKTAGYRKKRGYKVYVL 100 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH--hccCCEEEEECCCcHHHHHHHHHHHCCCEEEEe
Confidence 57999999999999998877553 345589999999999988777776665555443
No 439
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=87.18 E-value=2.8 Score=48.61 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=58.4
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHH-HhCCCEEEEEcCchhhHHHHHHHHHHhcCCeE---EEeccccc--------
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPLKALSNQKYRELHQEFKDVG---LMTGDVTL-------- 155 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~-l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg---~~tGd~~~-------- 155 (931)
+..|.-++|.|+||+|||..+.-.+... ...+..|+|++.-- =..|..+++.....++. +..|..+.
T Consensus 192 ~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm-~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~~~~~~ 270 (434)
T TIGR00665 192 LQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEM-SAEQLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTS 270 (434)
T ss_pred CCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcC-CHHHHHHHHHHHhcCCCHHHhccCCCCHHHHHHHHH
Confidence 3556788999999999998766444443 34677888887653 34444444444322111 11221110
Q ss_pred ----CCCCCeeE-----ecHHHHHHHHhcCccccCcccEEEEeccccCCC
Q 002357 156 ----SPNASCLV-----MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 156 ----~~~~~IlV-----~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~ 196 (931)
-.+.++.| .|++.+...+.+... -..+++||||=.+.+..
T Consensus 271 a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~-~~~~~~vvID~l~~i~~ 319 (434)
T TIGR00665 271 AAGKLSEAPLYIDDTPGLTITELRAKARRLKR-EHGLGLIVIDYLQLMSG 319 (434)
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcCC
Confidence 01123333 245555543322111 12478999999888753
No 440
>PRK09354 recA recombinase A; Provisional
Probab=87.05 E-value=1 Score=50.02 Aligned_cols=45 Identities=27% Similarity=0.202 Sum_probs=39.1
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQK 135 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~ 135 (931)
|.-+.+.+|+|||||..++..+......+.+++|+..--++....
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~ 104 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVY 104 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHH
Confidence 567889999999999999888888888899999999988877643
No 441
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=87.03 E-value=2.3 Score=50.06 Aligned_cols=50 Identities=14% Similarity=0.333 Sum_probs=30.7
Q ss_pred HHHHHHHhcC--ccccCcccEEEEeccccCCCCCchHHHHHHHHh---cCCCceEEEec
Q 002357 167 EILRGMLYRG--SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF---LPPAIKMVFLS 220 (931)
Q Consensus 167 e~L~~~l~~~--~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~---l~~~~q~v~lS 220 (931)
+.+++.+... ........++||||||+|.. ...+.++.. -|++..+|+.+
T Consensus 100 d~IRelie~~~~~P~~~~~KVvIIDEad~Lt~----~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 100 DDIRELIEQTKYKPSMARFKIFIIDEVHMLTK----EAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred HHHHHHHHHHhhCcccCCeEEEEEECcccCCH----HHHHHHHHHHhhcCCceEEEEEE
Confidence 5555555331 22346789999999999974 233344433 35667777765
No 442
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=86.96 E-value=0.78 Score=47.65 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCCcHHHH
Q 002357 91 NESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~ 108 (931)
.+||+..+|+|+|||..|
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 379999999999999864
No 443
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=86.95 E-value=1.1 Score=49.23 Aligned_cols=49 Identities=27% Similarity=0.216 Sum_probs=38.2
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYREL 139 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l 139 (931)
|+-+-+.+|+|+|||..++..+..+.+.+..++|+-|-.+|-....+.+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~l 101 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESL 101 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHT
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhc
Confidence 4567799999999999999888888888999999999999877665554
No 444
>PRK08006 replicative DNA helicase; Provisional
Probab=86.82 E-value=3.2 Score=48.44 Aligned_cols=132 Identities=20% Similarity=0.203 Sum_probs=70.8
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHH-HhCCCEEEEEcCchhhHHHHHHHHHHhcCCeE---EEecccc---------
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPLKALSNQKYRELHQEFKDVG---LMTGDVT--------- 154 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~-l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg---~~tGd~~--------- 154 (931)
+..|+-+++.|.||.|||..++-.+... ...+.+|+|.+.- .=..|...++-.....+. +..|..+
T Consensus 221 l~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlE-M~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~ 299 (471)
T PRK08006 221 LQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLE-MPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISG 299 (471)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHH
Confidence 4566778999999999998776444443 3567888888765 334455555544322111 1122211
Q ss_pred ----cCCCCCeeE-----ecHHHHHHHHhcCccccCcccEEEEeccccCCCC----CchHHHHHHHHhc---C--CCceE
Q 002357 155 ----LSPNASCLV-----MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDR----ERGVVWEESIIFL---P--PAIKM 216 (931)
Q Consensus 155 ----~~~~~~IlV-----~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~----~~g~~~~~ii~~l---~--~~~q~ 216 (931)
+-...++.| .|+..++....+-......+++||||=.|.|... .+...+.++...| . -++.+
T Consensus 300 a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipV 379 (471)
T PRK08006 300 TMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPV 379 (471)
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHhCCeE
Confidence 102234443 3555554433221111125899999999988532 2333333433322 1 25667
Q ss_pred EEec
Q 002357 217 VFLS 220 (931)
Q Consensus 217 v~lS 220 (931)
|++|
T Consensus 380 i~Ls 383 (471)
T PRK08006 380 VALS 383 (471)
T ss_pred EEEE
Confidence 7776
No 445
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.82 E-value=1.5 Score=52.67 Aligned_cols=37 Identities=24% Similarity=0.503 Sum_probs=24.5
Q ss_pred cCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEec
Q 002357 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLS 220 (931)
Q Consensus 180 l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~lS 220 (931)
..+.+++||||+|+|.. ...+.++..+ |.++.+|+.|
T Consensus 117 ~~~~KVvIIdev~~Lt~----~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLST----NAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCH----HHHHHHHHHHHcCCCCeEEEEEe
Confidence 46789999999999974 2344444444 4566666655
No 446
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=86.80 E-value=1.5 Score=44.40 Aligned_cols=55 Identities=27% Similarity=0.295 Sum_probs=35.9
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHh----------CCCEEEEEcCchhhHHHHHHHHHHhcC
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFR----------DKQRVIYTSPLKALSNQKYRELHQEFK 144 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~----------~~~rvl~l~P~kaL~~Q~~~~l~~~~~ 144 (931)
..|.-+++.||+|+|||....-.+..... .+.+|+|+..--. ..+..+.+.....
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 36778999999999999876544444433 4678999987755 5567777776554
No 447
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=86.78 E-value=0.45 Score=54.30 Aligned_cols=56 Identities=18% Similarity=0.011 Sum_probs=42.1
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEe
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMT 150 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~t 150 (931)
+++|.||||||||..+.+|-+. ..+..++++-|--++........+..+.+|-++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll--~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v~n 56 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLL--TWPGSVVVLDPKGENFELTSEHRRALGRKVFVFD 56 (384)
T ss_pred CeeEecCCCCCCccEEEccchh--cCCCCEEEEccchhHHHHHHHHHHHcCCeEEEEc
Confidence 5799999999999987766443 3467899999999999877666665544555443
No 448
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=86.56 E-value=0.84 Score=48.15 Aligned_cols=74 Identities=18% Similarity=0.120 Sum_probs=55.3
Q ss_pred CCEEEEEcCchhhHHHHHHHHHHhcC---CeEEEeccc-cc--------CCCCCeeEecHHHHHHHHhcCccccCcccEE
Q 002357 119 KQRVIYTSPLKALSNQKYRELHQEFK---DVGLMTGDV-TL--------SPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (931)
Q Consensus 119 ~~rvl~l~P~kaL~~Q~~~~l~~~~~---~vg~~tGd~-~~--------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (931)
.+.+||++..--=|-.+.+.++.+-+ .|+-+..-. .+ ....+|.||||+++..++..+...++++.+|
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~~i 205 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLKRI 205 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCeEE
Confidence 46788888886667788888887632 333322211 11 2357899999999999999999999999999
Q ss_pred EEeccc
Q 002357 187 IFDEIH 192 (931)
Q Consensus 187 ViDEaH 192 (931)
|+|--|
T Consensus 206 vlD~s~ 211 (252)
T PF14617_consen 206 VLDWSY 211 (252)
T ss_pred EEcCCc
Confidence 999766
No 449
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=86.55 E-value=4.5 Score=43.92 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=68.2
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEE--EEEcCc--------hhhHHHHHHHHHHhcCCeEEEecccccCCCC
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRV--IYTSPL--------KALSNQKYRELHQEFKDVGLMTGDVTLSPNA 159 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rv--l~l~P~--------kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~ 159 (931)
.+.++++.+|-|||||..--..+......+-+. +=+-|+ +.++.|...++... +...|..+.
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~----~k~~gsfte---- 119 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRI----VKSFGSFTE---- 119 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh----heeecccch----
Confidence 457899999999999976555544432333333 333333 33344444444332 222221110
Q ss_pred CeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcC---CCceEEEeccCCC
Q 002357 160 SCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP---PAIKMVFLSATMS 224 (931)
Q Consensus 160 ~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~---~~~q~v~lSAT~~ 224 (931)
+-+.+...|..+....+.--.+|+||.|......|...++..+.... ..+=++|+|.-..
T Consensus 120 -----~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 120 -----NLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred -----hHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 11344455555544444446789999998888777777776665432 3445677766553
No 450
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=86.49 E-value=3.7 Score=45.65 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC-CeEEEecccccCC
Q 002357 79 PFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDVTLSP 157 (931)
Q Consensus 79 ~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~vg~~tGd~~~~~ 157 (931)
....++-.....+..|++.+++|+||+.+|-. |.........-++.+...++...... ..+|+ ..|..+|.....
T Consensus 17 ~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~-iH~~s~r~~~pfv~v~c~~~~~~~~~--~~lfg~~~~~~~g~~~~~- 92 (326)
T PRK11608 17 EVLEQVSRLAPLDKPVLIIGERGTGKELIASR-LHYLSSRWQGPFISLNCAALNENLLD--SELFGHEAGAFTGAQKRH- 92 (326)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHH-HHHhCCccCCCeEEEeCCCCCHHHHH--HHHccccccccCCccccc-
Confidence 34444445556788999999999999998753 33222222233444444344322111 23444 223333332110
Q ss_pred CCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCC
Q 002357 158 NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 158 ~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
++.+ ...+=+.+++||++.+.
T Consensus 93 --------~g~l---------~~a~gGtL~l~~i~~L~ 113 (326)
T PRK11608 93 --------PGRF---------ERADGGTLFLDELATAP 113 (326)
T ss_pred --------CCch---------hccCCCeEEeCChhhCC
Confidence 1111 12234789999999997
No 451
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.44 E-value=5.4 Score=47.15 Aligned_cols=77 Identities=17% Similarity=0.062 Sum_probs=60.6
Q ss_pred CCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHH
Q 002357 328 KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK 407 (931)
Q Consensus 328 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R 407 (931)
.+.++||.++++.-+.+++..|.+.. ...++++||++++.+|
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f--------------------------------------~~~v~vlhs~~~~~er 65 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRF--------------------------------------GSQVAVLHSGLSDSEK 65 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHh--------------------------------------CCcEEEEECCCCHHHH
Confidence 35679999999999999988886521 0126899999999999
Q ss_pred HHHHHHHhcCCceEEEecchhhcccCCCCcEEEEec
Q 002357 408 ELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA 443 (931)
Q Consensus 408 ~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~ 443 (931)
..+.....+|..+|+|+|..+.. .-+++..+||..
T Consensus 66 ~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVD 100 (505)
T TIGR00595 66 LQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVD 100 (505)
T ss_pred HHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEE
Confidence 99988889999999999986443 456677777654
No 452
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=86.42 E-value=12 Score=42.94 Aligned_cols=118 Identities=11% Similarity=0.126 Sum_probs=60.5
Q ss_pred cEEEEcCCCCCcHHHHH-HHHHHHHhCCCEEEEEcC--chhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecH-HH
Q 002357 93 SVLVSAHTSAGKTAVAE-YAIAMAFRDKQRVIYTSP--LKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT-EI 168 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~-l~i~~~l~~~~rvl~l~P--~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp-e~ 168 (931)
-+++++++|+|||..+. +|.. ....|.+|++++- .+.-+.++.+.+.+..+ +.+..... . ..| ..
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~-l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~-vp~~~~~~----~-----~dp~~i 170 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYY-YQRKGFKPCLVCADTFRAGAFDQLKQNATKAR-IPFYGSYT----E-----SDPVKI 170 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHHCCCCEEEEcCcccchhHHHHHHHHhhccC-CeEEeecC----C-----CCHHHH
Confidence 46789999999986544 4433 3355667665543 35545555444444321 11111000 0 012 11
Q ss_pred HHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHH---HHhcCCCceEEEeccCCCC
Q 002357 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES---IIFLPPAIKMVFLSATMSN 225 (931)
Q Consensus 169 L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~i---i~~l~~~~q~v~lSAT~~n 225 (931)
..+-+.... -...++||+|=+-+.... .....++ .....+..-++.++||...
T Consensus 171 ~~~~l~~~~--~~~~DvViIDTaGr~~~d--~~lm~El~~i~~~~~p~e~lLVlda~~Gq 226 (429)
T TIGR01425 171 ASEGVEKFK--KENFDIIIVDTSGRHKQE--DSLFEEMLQVAEAIQPDNIIFVMDGSIGQ 226 (429)
T ss_pred HHHHHHHHH--hCCCCEEEEECCCCCcch--HHHHHHHHHHhhhcCCcEEEEEeccccCh
Confidence 122221111 136899999999766432 2223333 2334455668888898753
No 453
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=86.24 E-value=1.9 Score=51.14 Aligned_cols=114 Identities=17% Similarity=0.221 Sum_probs=74.2
Q ss_pred ccCCCCCCHHHHHHHHHH--------hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHh
Q 002357 71 KTYSFELDPFQRVSVACL--------ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l--------~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
..-.|-+.++-.+.+..+ .+|+-++.++|+|-|||-++ -.|+.++ ...
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~-kSIA~AL-----------------------nRk 465 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIA-KSIARAL-----------------------NRK 465 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHH-HHHHHHh-----------------------CCc
Confidence 344566888888888876 35677888999999999865 3333333 222
Q ss_pred cC--CeEEEecccccCCCCCeeE-ecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcC
Q 002357 143 FK--DVGLMTGDVTLSPNASCLV-MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP 211 (931)
Q Consensus 143 ~~--~vg~~tGd~~~~~~~~IlV-~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~ 211 (931)
|- .||-++--..+...-.-.| +-|+++.+.|.+-.. +=-++.|||+|.+.....|.--..++..|.
T Consensus 466 FfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t---~NPliLiDEvDKlG~g~qGDPasALLElLD 534 (906)
T KOG2004|consen 466 FFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKT---ENPLILIDEVDKLGSGHQGDPASALLELLD 534 (906)
T ss_pred eEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCC---CCceEEeehhhhhCCCCCCChHHHHHHhcC
Confidence 22 4555554444554444444 678999988865332 224799999999986556666666666553
No 454
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=86.23 E-value=2.1 Score=51.91 Aligned_cols=61 Identities=26% Similarity=0.252 Sum_probs=47.2
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchh--hHHHHHHHHHHhcCC--eEEEe
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKA--LSNQKYRELHQEFKD--VGLMT 150 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~ka--L~~Q~~~~l~~~~~~--vg~~t 150 (931)
...+++|.|+||+|||..+...+.+.++.+..++++=|--. |....+..++..+.. +-.++
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~l~~q~i~~g~~viv~DpKgD~~l~~~~~~~~~~~G~~dd~~~f~ 239 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAELLITQDIRRGDVVIVIDPKGDADLKRRMRAEAKRAGRPDRFYYFH 239 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCchHHHHHHHHHHHHhCCCceEEEEe
Confidence 45789999999999999988888888888888888888864 777666666666543 44444
No 455
>PHA00012 I assembly protein
Probab=86.07 E-value=5.4 Score=43.46 Aligned_cols=31 Identities=29% Similarity=0.178 Sum_probs=26.1
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEE
Q 002357 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIY 124 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~ 124 (931)
-++.+..|+|||+.+.--|...+++|.+|+-
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~Gr~VaT 34 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKGCIVAT 34 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcCCEEEe
Confidence 4789999999999988888888899985544
No 456
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=86.02 E-value=2.2 Score=45.62 Aligned_cols=107 Identities=15% Similarity=0.170 Sum_probs=59.3
Q ss_pred HHHHHhcC-----CcEEEEcCCCCCcHHHHHHHHHHH-Hh-----CCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecc
Q 002357 84 SVACLERN-----ESVLVSAHTSAGKTAVAEYAIAMA-FR-----DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGD 152 (931)
Q Consensus 84 ai~~l~~g-----~~vlv~apTGsGKTl~~~l~i~~~-l~-----~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd 152 (931)
.++.++.| .-.=++++.|+|||...+-..+.. +. .+.+|+|+.-......+...++.+.++- ..+
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~----~~~ 101 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGL----DPE 101 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-----HH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhcccc----ccc
Confidence 56666554 334489999999997654433333 22 3578999987777777666666655430 000
Q ss_pred cccCCCCCeeEecHHHHHHHHhcCccc--cCcccEEEEeccccC
Q 002357 153 VTLSPNASCLVMTTEILRGMLYRGSEV--LKEVAWVIFDEIHYM 194 (931)
Q Consensus 153 ~~~~~~~~IlV~Tpe~L~~~l~~~~~~--l~~l~~vViDEaH~l 194 (931)
.-.+.=.-+-+.+.+.+...+..-... -.++++||+|-+=.+
T Consensus 102 ~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaal 145 (256)
T PF08423_consen 102 EILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAAL 145 (256)
T ss_dssp HHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHH
T ss_pred hhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHH
Confidence 000000001133556555555432111 147999999998654
No 457
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=86.01 E-value=0.87 Score=50.39 Aligned_cols=74 Identities=14% Similarity=0.026 Sum_probs=45.8
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRG 171 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~ 171 (931)
.-+++.+|.|+|||+.+....... +...+.+... +|. +=.++.+|++..
T Consensus 149 lgllL~GPPGcGKTllAraiA~el---g~~~i~vsa~-eL~---------------------------sk~vGEsEk~IR 197 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKKM---GIEPIVMSAG-ELE---------------------------SENAGEPGKLIR 197 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHc---CCCeEEEEHH-Hhh---------------------------cCcCCcHHHHHH
Confidence 357889999999999865443332 3333333322 221 124677888777
Q ss_pred HHhcCccc----cCcccEEEEeccccCCC
Q 002357 172 MLYRGSEV----LKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 172 ~l~~~~~~----l~~l~~vViDEaH~l~~ 196 (931)
.+++.... -....+|+|||+|.+..
T Consensus 198 ~~F~~A~~~a~~~~aPcVLFIDEIDA~~g 226 (413)
T PLN00020 198 QRYREAADIIKKKGKMSCLFINDLDAGAG 226 (413)
T ss_pred HHHHHHHHHhhccCCCeEEEEehhhhcCC
Confidence 66653321 12567999999998764
No 458
>PRK05595 replicative DNA helicase; Provisional
Probab=85.99 E-value=1.6 Score=50.72 Aligned_cols=106 Identities=21% Similarity=0.216 Sum_probs=58.3
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHH-HHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeE---EEeccccc---------
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAM-AFRDKQRVIYTSPLKALSNQKYRELHQEFKDVG---LMTGDVTL--------- 155 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~-~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg---~~tGd~~~--------- 155 (931)
..|.-++|.|.||.|||..++-.+.. +...|.+|+|.+.-- =..|+..++.....++. +..|..+.
T Consensus 199 ~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEm-s~~~l~~R~~a~~~~v~~~~~~~~~l~~~e~~~~~~~ 277 (444)
T PRK05595 199 QKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEM-SKEQLAYKLLCSEANVDMLRLRTGNLEDKDWENIARA 277 (444)
T ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCC-CHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 45677889999999999877654443 456788999887652 23444444433322111 11121110
Q ss_pred ---CCCCCeeE-----ecHHHHHHHHhcCccccCcccEEEEeccccCCC
Q 002357 156 ---SPNASCLV-----MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 156 ---~~~~~IlV-----~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~ 196 (931)
-...++.| .|++.++..+.+-.. -..+++||+|=.|.|..
T Consensus 278 ~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~-~~~~~~vvIDylql~~~ 325 (444)
T PRK05595 278 SGPLAAAKIFIDDTAGVSVMEMRSKCRRLKI-EHGIDMILIDYLQLMSG 325 (444)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEeHHHhccC
Confidence 00122222 244555444332111 13589999999998864
No 459
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.95 E-value=2.6 Score=50.86 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=16.1
Q ss_pred CcEEEEcCCCCCcHHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~ 111 (931)
+.+|+.||.|+|||.++...
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34689999999999987544
No 460
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=85.88 E-value=2.7 Score=45.24 Aligned_cols=87 Identities=17% Similarity=0.213 Sum_probs=60.0
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHH-
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILR- 170 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~- 170 (931)
.-+=|.+|-|||||.++.-++..+...+.+++|+---.+|--+-.+.+..-+ ..+++|..|....
T Consensus 61 ~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~--------------~d~l~v~~~~~~e~ 126 (279)
T COG0468 61 RITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL--------------LDNLLVSQPDTGEQ 126 (279)
T ss_pred eEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHHhh--------------hcceeEecCCCHHH
Confidence 3445899999999999999999999999999999988888877766665542 1234454442221
Q ss_pred -----HHHhcCccccCcccEEEEeccccC
Q 002357 171 -----GMLYRGSEVLKEVAWVIFDEIHYM 194 (931)
Q Consensus 171 -----~~l~~~~~~l~~l~~vViDEaH~l 194 (931)
..+.+. ..+.+++||+|=+=.+
T Consensus 127 q~~i~~~~~~~--~~~~i~LvVVDSvaa~ 153 (279)
T COG0468 127 QLEIAEKLARS--GAEKIDLLVVDSVAAL 153 (279)
T ss_pred HHHHHHHHHHh--ccCCCCEEEEecCccc
Confidence 111111 1116999999977544
No 461
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=85.83 E-value=0.78 Score=50.57 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=49.6
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHH
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTE 167 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe 167 (931)
+..+.++++++|||||||... .++...+....+++++-.+.++.-.. -..+.+..... .. ...-.|..
T Consensus 141 v~~~~~ili~G~tGsGKTTll-~al~~~~~~~~~iv~ied~~El~~~~-------~~~~~l~~~~~---~~-~~~~~~~~ 208 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFL-KSLVDEIPKDERIITIEDTREIFLPH-------PNYVHLFYSKG---GQ-GLAKVTPK 208 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHH-HHHHccCCccccEEEEcCccccCCCC-------CCEEEEEecCC---CC-CcCccCHH
Confidence 467899999999999999864 34444455556777665544432211 11233333221 11 11123444
Q ss_pred HHHHHHhcCccccCcccEEEEeccc
Q 002357 168 ILRGMLYRGSEVLKEVAWVIFDEIH 192 (931)
Q Consensus 168 ~L~~~l~~~~~~l~~l~~vViDEaH 192 (931)
.+.....+ .+.+++|+||+=
T Consensus 209 ~~l~~~Lr-----~~pd~ii~gE~r 228 (308)
T TIGR02788 209 DLLQSCLR-----MRPDRIILGELR 228 (308)
T ss_pred HHHHHHhc-----CCCCeEEEeccC
Confidence 44433222 356889999996
No 462
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=85.66 E-value=0.47 Score=61.52 Aligned_cols=108 Identities=19% Similarity=0.137 Sum_probs=74.2
Q ss_pred CcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHH
Q 002357 330 QPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKEL 409 (931)
Q Consensus 330 ~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~ 409 (931)
.-.|+|+..+..+....+.++........- .+ ....+.+. .... ......+..
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~---g~~~~~~~--k~~~------------~~~~~~~~~ 345 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLF----------VT---GASGANLW--KSFK------------NELELRQAE 345 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcce----------ee---ccccCccc--hhhH------------HHHHhhhHH
Confidence 457899999999988888886643332110 00 00000000 0000 001223667
Q ss_pred HHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCC
Q 002357 410 VELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGK 472 (931)
Q Consensus 410 v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~ 472 (931)
++..|....+++|++|.++..|+|+|.++.|+ .||. |....+|+|..||+-+.+.
T Consensus 346 vl~~~~~~~ln~L~~~~~~~e~~d~~~~~~~~----~~~~----~~~~~~~vq~~~r~~~~~~ 400 (1606)
T KOG0701|consen 346 VLRRFHFHELNLLIATSVLEEGVDVPKCNLVV----LFDA----PTYYRSYVQKKGRARAADS 400 (1606)
T ss_pred HHHHHhhhhhhHHHHHHHHHhhcchhhhhhhe----eccC----cchHHHHHHhhcccccchh
Confidence 88999999999999999999999999999988 6666 7888999999999987653
No 463
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=85.65 E-value=1.3 Score=46.56 Aligned_cols=40 Identities=10% Similarity=0.098 Sum_probs=29.3
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhC------CCEEEEEcCch
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRD------KQRVIYTSPLK 129 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~------~~rvl~l~P~k 129 (931)
.|.-+.+.+|+|+|||..+...+...... +..++|+.--.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 46778999999999998876555544333 36888988544
No 464
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.49 E-value=2.9 Score=50.35 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCCcHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (931)
+-+++.+|+|+|||.++-
T Consensus 111 ~illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIK 128 (637)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 348999999999998753
No 465
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=85.45 E-value=3.9 Score=48.51 Aligned_cols=86 Identities=22% Similarity=0.220 Sum_probs=45.1
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC-CeEEEecccccCCCCCeeEecHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDVTLSPNASCLVMTTE 167 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~vg~~tGd~~~~~~~~IlV~Tpe 167 (931)
..+..|++.+++|+|||.+|-..-......+.. ++.+...++.....+ ..+|+ .-|.++|..... ++
T Consensus 208 ~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p-~v~v~c~~~~~~~~e--~~lfG~~~g~~~ga~~~~---------~g 275 (509)
T PRK05022 208 ASDLNVLILGETGVGKELVARAIHAASPRADKP-LVYLNCAALPESLAE--SELFGHVKGAFTGAISNR---------SG 275 (509)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCC-eEEEEcccCChHHHH--HHhcCccccccCCCcccC---------Cc
Confidence 556789999999999999874433322222333 333333333322211 13455 223344432110 11
Q ss_pred HHHHHHhcCccccCcccEEEEeccccCC
Q 002357 168 ILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 168 ~L~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
.+ ...+=+.+++||++.+.
T Consensus 276 ~~---------~~a~gGtL~ldeI~~L~ 294 (509)
T PRK05022 276 KF---------ELADGGTLFLDEIGELP 294 (509)
T ss_pred ch---------hhcCCCEEEecChhhCC
Confidence 11 12234789999999997
No 466
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=85.45 E-value=12 Score=42.71 Aligned_cols=126 Identities=20% Similarity=0.222 Sum_probs=63.7
Q ss_pred cCCcEEEEcCCCCCcHHHHH-HHHHHHHhCC--CEEEEEcCc-hhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEec
Q 002357 90 RNESVLVSAHTSAGKTAVAE-YAIAMAFRDK--QRVIYTSPL-KALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMT 165 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~-l~i~~~l~~~--~rvl~l~P~-kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~T 165 (931)
.|..+.+.+|||+|||.... ++.......+ .-.++...+ +.=+.++...+.+..+ +. -..+.+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilG-vp------------~~~v~~ 256 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLG-VS------------VRSIKD 256 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcC-Cc------------eecCCC
Confidence 45678899999999998653 3322222222 234455554 2222333334444332 11 112334
Q ss_pred HHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc----CCCceEEEeccCCCChHHHHHHHHhh
Q 002357 166 TEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL----PPAIKMVFLSATMSNATQFAEWICHL 236 (931)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l----~~~~q~v~lSAT~~n~~e~~~~l~~~ 236 (931)
+..+...+.. +++.+.+++|.+=+.. +...+.+-+..+ ++...++.+|||.. ..++.+++..+
T Consensus 257 ~~dl~~al~~----l~~~d~VLIDTaGrsq---rd~~~~~~l~~l~~~~~~~~~~LVl~at~~-~~~~~~~~~~f 323 (420)
T PRK14721 257 IADLQLMLHE----LRGKHMVLIDTVGMSQ---RDQMLAEQIAMLSQCGTQVKHLLLLNATSS-GDTLDEVISAY 323 (420)
T ss_pred HHHHHHHHHH----hcCCCEEEecCCCCCc---chHHHHHHHHHHhccCCCceEEEEEcCCCC-HHHHHHHHHHh
Confidence 5544433332 5678999999863222 112222222222 23456788999963 33445555543
No 467
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.30 E-value=3.9 Score=49.25 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=24.9
Q ss_pred ccCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEec
Q 002357 179 VLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLS 220 (931)
Q Consensus 179 ~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~lS 220 (931)
.+.+..+|||||+|.|.. ...+.++..+ |...-+|+.+
T Consensus 124 ~~~~~KVvIIdEad~Lt~----~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 124 QKGRYRVYIIDEVHMLST----AAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred hcCCCEEEEEeChhhcCH----HHHHHHHHHHhCCCCCeEEEEEe
Confidence 456789999999999974 3345555554 3344555554
No 468
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=85.22 E-value=5.1 Score=44.99 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=15.0
Q ss_pred cEEEEcCCCCCcHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l 110 (931)
.+++.||+|+|||..+..
T Consensus 38 ~~Ll~G~~G~GKt~~a~~ 55 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARI 55 (355)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999987643
No 469
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=85.15 E-value=3.2 Score=51.06 Aligned_cols=81 Identities=14% Similarity=0.053 Sum_probs=64.6
Q ss_pred CCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHH
Q 002357 328 KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK 407 (931)
Q Consensus 328 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R 407 (931)
++.+++|.++|+.-|.+.+..+.+..-. +.-.++.+||+++..+|
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~-----------------------------------~~i~v~ll~G~~~~~~r 353 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEP-----------------------------------LGIRVALLTGSLKGKER 353 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhh-----------------------------------cCcEEEEEcCCCCHHHH
Confidence 4568999999999999988887652110 11127899999999999
Q ss_pred HHHHHHHhcCCceEEEecch-hhcccCCCCcEEEEec
Q 002357 408 ELVELLFQEGLVKALFATET-FAMGLNMPAKTVVFTA 443 (931)
Q Consensus 408 ~~v~~~F~~g~i~vLvaT~~-la~GIdip~~~vVI~~ 443 (931)
..+...+.+|...|+|+|.. +...++++.+.+||..
T Consensus 354 ~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVID 390 (681)
T PRK10917 354 REILEAIASGEADIVIGTHALIQDDVEFHNLGLVIID 390 (681)
T ss_pred HHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEe
Confidence 99999999999999999975 4456788888887754
No 470
>PRK10867 signal recognition particle protein; Provisional
Probab=85.12 E-value=8.7 Score=44.22 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=57.9
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHhC-CCEEEEEc--CchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEIL 169 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~~-~~rvl~l~--P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L 169 (931)
-+++++++|+|||..+.-.+...... +.+|+++. +.|.-+..+.+.+.+.. ++.++..... ..|..+
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~-gv~v~~~~~~---------~dp~~i 171 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQI-GVPVFPSGDG---------QDPVDI 171 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhc-CCeEEecCCC---------CCHHHH
Confidence 47789999999998654433333344 66665543 34444443334333332 2222221110 133333
Q ss_pred H-HHHhcCccccCcccEEEEeccccCCCCCchHHHHH---HHHhcCCCceEEEeccCCC
Q 002357 170 R-GMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEE---SIIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 170 ~-~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~---ii~~l~~~~q~v~lSAT~~ 224 (931)
. ..+... ....+++||+|=+=++... .....+ +.....+.--++.++||..
T Consensus 172 ~~~a~~~a--~~~~~DvVIIDTaGrl~~d--~~lm~eL~~i~~~v~p~evllVlda~~g 226 (433)
T PRK10867 172 AKAALEEA--KENGYDVVIVDTAGRLHID--EELMDELKAIKAAVNPDEILLVVDAMTG 226 (433)
T ss_pred HHHHHHHH--HhcCCCEEEEeCCCCcccC--HHHHHHHHHHHHhhCCCeEEEEEecccH
Confidence 2 222211 1346899999988765422 122222 2223333333677777753
No 471
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=85.05 E-value=1.5 Score=48.92 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHH-hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhH
Q 002357 77 LDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALS 132 (931)
Q Consensus 77 l~~~Q~~ai~~l-~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~ 132 (931)
+++.+.+.+..+ ..+.+++++++||||||... .++...+....+++++--+.+|.
T Consensus 163 ~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i~~~~riv~iEd~~El~ 218 (340)
T TIGR03819 163 FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALVAPDERIVLVEDAAELR 218 (340)
T ss_pred CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccCCCCCcEEEECCcceec
Confidence 455666666554 56789999999999999764 34444555667888887777773
No 472
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=85.00 E-value=1.4 Score=51.18 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCCcHHHH
Q 002357 91 NESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~ 108 (931)
...||+++|+|+|||+.|
T Consensus 545 PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred CCceEEeCCCCccHHHHH
Confidence 467999999999999975
No 473
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=84.99 E-value=1.3 Score=51.84 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHhc-CC-cEEEEcCCCCCcHHHHHHHHHHHHhC-CCEEEEE
Q 002357 77 LDPFQRVSVACLER-NE-SVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYT 125 (931)
Q Consensus 77 l~~~Q~~ai~~l~~-g~-~vlv~apTGsGKTl~~~l~i~~~l~~-~~rvl~l 125 (931)
+.+-|.+.+..+.. .. -+++++|||||||... ++++..+.. +.+++.+
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~~~~~~iiTi 276 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLNTPERNILTV 276 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccCCCCCcEEEE
Confidence 46778888876643 33 4789999999999874 445555543 3445444
No 474
>PRK13695 putative NTPase; Provisional
Probab=84.98 E-value=13 Score=36.87 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=20.1
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHhCCCEE
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRV 122 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~~~~rv 122 (931)
.+++.++.|+|||..+...+......+.++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 578999999999998764333322235553
No 475
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=84.78 E-value=1.7 Score=47.84 Aligned_cols=97 Identities=19% Similarity=0.160 Sum_probs=52.8
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHH------hCCCEEEEEcCchhhHHHHHHHHHHhcC-CeEEEecccccCCCCCeeE
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAF------RDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDVTLSPNASCLV 163 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l------~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~vg~~tGd~~~~~~~~IlV 163 (931)
|.-+.+.+++|+|||......+.... ..+.+++|+.---.+..+...++.+.++ +.. .-. .+|.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~-----~~l---~~i~~ 167 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPD-----AVL---DNILY 167 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChH-----Hhc---CcEEE
Confidence 46678999999999987654443332 1357999998665554444443333332 110 000 11332
Q ss_pred ---ecHHHHHHHHhcCccc--cCcccEEEEeccccCC
Q 002357 164 ---MTTEILRGMLYRGSEV--LKEVAWVIFDEIHYMK 195 (931)
Q Consensus 164 ---~Tpe~L~~~l~~~~~~--l~~l~~vViDEaH~l~ 195 (931)
-+.+.+...+..-... -.++++||+|=+-.+.
T Consensus 168 ~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~ 204 (313)
T TIGR02238 168 ARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMALF 204 (313)
T ss_pred ecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchHhh
Confidence 2445444443221111 1368999999887543
No 476
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=84.76 E-value=1.4 Score=48.56 Aligned_cols=71 Identities=21% Similarity=0.225 Sum_probs=41.9
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC-CeEEEecccccCCCCCeeEecHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDVTLSPNASCLVMTTEILR 170 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~vg~~tGd~~~~~~~~IlV~Tpe~L~ 170 (931)
+|++..+|+|+|||+++ ++|+ ...+ ++.++||+.--.-+.+ -|+-...+.
T Consensus 385 RNilfyGPPGTGKTm~A--------------------relA--------r~SGlDYA~mTGGDVAPlG~q-aVTkiH~lF 435 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA--------------------RELA--------RHSGLDYAIMTGGDVAPLGAQ-AVTKIHKLF 435 (630)
T ss_pred hheeeeCCCCCCchHHH--------------------HHHH--------hhcCCceehhcCCCccccchH-HHHHHHHHH
Confidence 68999999999999975 2332 2233 7778887643222222 233344455
Q ss_pred HHHhcCccccCcccEEEEeccccCC
Q 002357 171 GMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 171 ~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
++-.+.. .==++.|||+|..+
T Consensus 436 DWakkS~----rGLllFIDEADAFL 456 (630)
T KOG0742|consen 436 DWAKKSR----RGLLLFIDEADAFL 456 (630)
T ss_pred HHHhhcc----cceEEEehhhHHHH
Confidence 5443322 22267899999554
No 477
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.30 E-value=2.9 Score=49.87 Aligned_cols=124 Identities=17% Similarity=0.233 Sum_probs=69.1
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHHHh--CCCEE-EEEcCchhhHHHHHHHHHHhcC-CeEEEecccccCCCCCeeE
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFR--DKQRV-IYTSPLKALSNQKYRELHQEFK-DVGLMTGDVTLSPNASCLV 163 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~l~--~~~rv-l~l~P~kaL~~Q~~~~l~~~~~-~vg~~tGd~~~~~~~~IlV 163 (931)
+..|+.+-+.+|.|+|||.++- +++.+- ..+++ +==.|.+.+-.++++.--..-+ +--++.|...-|-.+-+--
T Consensus 491 i~pGe~vALVGPSGsGKSTias--LL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~ 568 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIAS--LLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDN 568 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHH--HHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCC
Confidence 3678999999999999999853 334442 23333 3346888777776653222111 2223333332221111112
Q ss_pred ecHHHHHHH---------Hh------------c--------------CccccCcccEEEEeccccCCCCCchHHHHHHHH
Q 002357 164 MTTEILRGM---------LY------------R--------------GSEVLKEVAWVIFDEIHYMKDRERGVVWEESII 208 (931)
Q Consensus 164 ~Tpe~L~~~---------l~------------~--------------~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~ 208 (931)
+|-|.+.+. +. + .+-.+++-..+|+|||--.+|.+-...+.+.+.
T Consensus 569 ~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~ 648 (716)
T KOG0058|consen 569 ATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALD 648 (716)
T ss_pred CCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHH
Confidence 233332211 00 0 012366788999999998888877777777776
Q ss_pred hcCCC
Q 002357 209 FLPPA 213 (931)
Q Consensus 209 ~l~~~ 213 (931)
.+..+
T Consensus 649 ~~~~~ 653 (716)
T KOG0058|consen 649 RLMQG 653 (716)
T ss_pred HhhcC
Confidence 66555
No 478
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=83.87 E-value=1.2 Score=52.47 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=39.1
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhC-CCEEEEEcCchhhHHHHHHHHHHh
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~-~~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
+|..++|.+|+|+|||+.+..-+...+.+ +.+++|++-- +-..+..+...++
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e-E~~~~l~~~~~~~ 72 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE-ESPQDIIKNARSF 72 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe-cCHHHHHHHHHHc
Confidence 46789999999999999887666666555 7899999854 5555665555554
No 479
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=83.62 E-value=4.1 Score=50.11 Aligned_cols=86 Identities=20% Similarity=0.147 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCC----CEEEEEcCchhhHHHHHHHHHHhcCCeEEEec
Q 002357 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK----QRVIYTSPLKALSNQKYRELHQEFKDVGLMTG 151 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~----~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tG 151 (931)
.|++-|++|+... ...++|.|..|||||.+-..-+...+..+ ..++.++=|+-.+.++..++.+..+.
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~~------ 73 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLGL------ 73 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhCc------
Confidence 4789999999866 56789999999999999887777777553 35777777777788888888888754
Q ss_pred ccccCCCCCeeEecHHHHHHHH
Q 002357 152 DVTLSPNASCLVMTTEILRGML 173 (931)
Q Consensus 152 d~~~~~~~~IlV~Tpe~L~~~l 173 (931)
.....+.|+|...+...+
T Consensus 74 ----~~~~~~~v~TfHs~~~~~ 91 (655)
T COG0210 74 ----PAAEGLTVGTFHSFALRI 91 (655)
T ss_pred ----ccccCcEEeeHHHHHHHH
Confidence 011117888988776444
No 480
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=83.55 E-value=2.5 Score=47.03 Aligned_cols=96 Identities=14% Similarity=0.141 Sum_probs=51.0
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHH-Hh-----CCCEEEEEcCchhhHHHHHHHHHHhcC-CeEEEecccccCCCCCeeE
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMA-FR-----DKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDVTLSPNASCLV 163 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~-l~-----~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~vg~~tGd~~~~~~~~IlV 163 (931)
|.-+.+.+++|+|||......+... +. .+.+++|+.---.+..+...++.+.++ +..-+. .+|.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l--------~~I~~ 197 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVL--------DNIIY 197 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhc--------CeEEE
Confidence 3567799999999998665433333 21 136899998865544444444433332 110000 11332
Q ss_pred ---ecHHHHHHHHhcCcc--ccCcccEEEEeccccC
Q 002357 164 ---MTTEILRGMLYRGSE--VLKEVAWVIFDEIHYM 194 (931)
Q Consensus 164 ---~Tpe~L~~~l~~~~~--~l~~l~~vViDEaH~l 194 (931)
.+++.+...+..-.. .-.++++||+|=+-.+
T Consensus 198 ~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSital 233 (344)
T PLN03187 198 ARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIAL 233 (344)
T ss_pred ecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHh
Confidence 244544433322110 1135889999987644
No 481
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=83.47 E-value=1.9 Score=50.19 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=25.5
Q ss_pred cCcccEEEEeccccCCCCCchHHHHHHHHhcC---CCceEEEe
Q 002357 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLP---PAIKMVFL 219 (931)
Q Consensus 180 l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~---~~~q~v~l 219 (931)
-.+.+..||||+|++. ...|..++..+. .++-+|+.
T Consensus 117 ~~ryKVyiIDEvHMLS----~~afNALLKTLEEPP~hV~FIlA 155 (515)
T COG2812 117 EGRYKVYIIDEVHMLS----KQAFNALLKTLEEPPSHVKFILA 155 (515)
T ss_pred cccceEEEEecHHhhh----HHHHHHHhcccccCccCeEEEEe
Confidence 5688999999999998 445777777663 34444443
No 482
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=83.24 E-value=3.3 Score=48.93 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=15.8
Q ss_pred CcEEEEcCCCCCcHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (931)
+++++.+|+|+|||..+-
T Consensus 89 ~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 579999999999998764
No 483
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.24 E-value=4.7 Score=44.39 Aligned_cols=55 Identities=20% Similarity=0.319 Sum_probs=41.9
Q ss_pred CCHHHHHHH-HHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhH
Q 002357 77 LDPFQRVSV-ACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALS 132 (931)
Q Consensus 77 l~~~Q~~ai-~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~ 132 (931)
+++.|..-+ .++..+++++++++||||||.. +.++...+....|++.+--|.++.
T Consensus 128 ~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~~~rivtIEdt~E~~ 183 (312)
T COG0630 128 ISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPPEERIVTIEDTPELK 183 (312)
T ss_pred CCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCchhcEEEEecccccc
Confidence 555665544 5568899999999999999975 467777777788888887776653
No 484
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=83.05 E-value=3.2 Score=49.62 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=18.2
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
.+|+.+.+.+|+|||||..+
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl 378 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLL 378 (529)
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 78999999999999999864
No 485
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=83.01 E-value=3.1 Score=51.26 Aligned_cols=80 Identities=18% Similarity=0.110 Sum_probs=58.8
Q ss_pred HHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccce
Q 002357 317 IFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIA 396 (931)
Q Consensus 317 ~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~ 396 (931)
.-.+........+.++++.++|..-+.+.++.|.++.-... .+..-+.
T Consensus 113 fg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~--------------------------------~~~~~~~ 160 (1187)
T COG1110 113 FGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAG--------------------------------SLDVLVV 160 (1187)
T ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcC--------------------------------Ccceeee
Confidence 33445555555668899999999999999988866321100 0011123
Q ss_pred eccCCCCHHHHHHHHHHHhcCCceEEEecchhh
Q 002357 397 VHHSGLLPVIKELVELLFQEGLVKALFATETFA 429 (931)
Q Consensus 397 ~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la 429 (931)
+||.|+..+|+..++.|.+|..+|||+|+.|-
T Consensus 161 -yh~~l~~~ekee~le~i~~gdfdIlitTs~FL 192 (1187)
T COG1110 161 -YHSALPTKEKEEALERIESGDFDILITTSQFL 192 (1187)
T ss_pred -eccccchHHHHHHHHHHhcCCccEEEEeHHHH
Confidence 99999999999999999999999999998763
No 486
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=82.99 E-value=1.4 Score=50.70 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=35.0
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQ 134 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q 134 (931)
...++++|.|+||||||.+.-..+......+.+++++=|.-++...
T Consensus 40 ~~~~h~~i~g~tGsGKt~~i~~l~~~~~~~~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 40 AEEAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGGFVSK 85 (410)
T ss_pred hhhccEEEEcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcchhHh
Confidence 3457899999999999987433444555678899999999876543
No 487
>PRK05636 replicative DNA helicase; Provisional
Probab=82.84 E-value=3.9 Score=48.20 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=27.8
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHH-HHhCCCEEEEEcC
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAM-AFRDKQRVIYTSP 127 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~-~l~~~~rvl~l~P 127 (931)
..|.-+++.|.||.|||..++-.+.. +.+.+..|+|.+.
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSl 302 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSL 302 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 45667889999999999876644333 3456778887743
No 488
>PRK14873 primosome assembly protein PriA; Provisional
Probab=82.81 E-value=15 Score=44.82 Aligned_cols=85 Identities=14% Similarity=0.089 Sum_probs=64.3
Q ss_pred HHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceec
Q 002357 319 KIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVH 398 (931)
Q Consensus 319 ~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~ 398 (931)
.++..... .+..+||.++....+..+...|....-. ..|+++
T Consensus 179 ~~i~~~l~-~Gk~vLvLvPEi~lt~q~~~rl~~~f~~-------------------------------------~~v~~l 220 (665)
T PRK14873 179 AAAAATLR-AGRGALVVVPDQRDVDRLEAALRALLGA-------------------------------------GDVAVL 220 (665)
T ss_pred HHHHHHHH-cCCeEEEEecchhhHHHHHHHHHHHcCC-------------------------------------CcEEEE
Confidence 34444333 3567999999999999999998753210 127899
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEe
Q 002357 399 HSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFT 442 (931)
Q Consensus 399 hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~ 442 (931)
|+++++.+|........+|..+|+|.|-.+ .=.-+++..+||.
T Consensus 221 hS~l~~~~R~~~w~~~~~G~~~IViGtRSA-vFaP~~~LgLIIv 263 (665)
T PRK14873 221 SAGLGPADRYRRWLAVLRGQARVVVGTRSA-VFAPVEDLGLVAI 263 (665)
T ss_pred CCCCCHHHHHHHHHHHhCCCCcEEEEccee-EEeccCCCCEEEE
Confidence 999999999999999999999999999863 3345556666664
No 489
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=82.77 E-value=12 Score=40.23 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHH-hcC--CcEEEEcCCCCCcHHHHHHHHHHHHh
Q 002357 77 LDPFQRVSVACL-ERN--ESVLVSAHTSAGKTAVAEYAIAMAFR 117 (931)
Q Consensus 77 l~~~Q~~ai~~l-~~g--~~vlv~apTGsGKTl~~~l~i~~~l~ 117 (931)
+.+.... ++.+ ..+ .++++.+|||+|||... ..+...+.
T Consensus 95 ~~~~~~~-l~~l~~~~~~~~~~i~g~~g~GKttl~-~~l~~~~~ 136 (270)
T TIGR02858 95 LGAADKL-LPYLVRNNRVLNTLIISPPQCGKTTLL-RDLARILS 136 (270)
T ss_pred CCcHHHH-HHHHHhCCCeeEEEEEcCCCCCHHHHH-HHHhCccC
Confidence 3344333 4444 344 68999999999999864 33444443
No 490
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=82.77 E-value=2.5 Score=50.97 Aligned_cols=64 Identities=16% Similarity=0.259 Sum_probs=35.0
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHHHh-CCCEEEE-EcCchhhHHHHHHHHHHhcC-CeEEEecc
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIY-TSPLKALSNQKYRELHQEFK-DVGLMTGD 152 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~l~-~~~rvl~-l~P~kaL~~Q~~~~l~~~~~-~vg~~tGd 152 (931)
+..|+.+-+.+|||||||...-+- ..... ..+.+++ =.+.+.+.....+.--.+.+ +..++.|.
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL-~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~T 418 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLL-LRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGT 418 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH-hccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeeccc
Confidence 578889999999999998864322 22222 2455555 23444444333333222222 45555543
No 491
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=82.72 E-value=1.8 Score=49.28 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=33.4
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQK 135 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~ 135 (931)
...+++++.|.||||||.+.-..+.....++.++||.=|.-+.....
T Consensus 13 ~e~~~~li~G~~GsGKT~~i~~ll~~~~~~g~~~iI~D~kg~~~~~f 59 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQAIRHLLDQIRARGDRAIIYDPKGEFTERF 59 (386)
T ss_dssp GGGG-EEEEE-TTSSHHHHHHHHHHHHHHTT-EEEEEEETTHHHHHH
T ss_pred hhhCcEEEECCCCCCHHHHHHHHHHHHHHcCCEEEEEECCchHHHHh
Confidence 34578999999999999866555555667888999999987765543
No 492
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=82.71 E-value=7.3 Score=44.33 Aligned_cols=66 Identities=17% Similarity=0.087 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHH--HhCCCEEEEEcCchhhHHHHHHHHHHhc
Q 002357 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMA--FRDKQRVIYTSPLKALSNQKYRELHQEF 143 (931)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~--l~~~~rvl~l~P~kaL~~Q~~~~l~~~~ 143 (931)
++..|++|.-..-.|.- .+.+-.|||||.+-..-+... -++..++++++=||.|..++.+...++|
T Consensus 163 fD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 163 FDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred ccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHHHHHHHHHHHH
Confidence 67778877544444444 567778999998754433222 2456799999999999999876666554
No 493
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=82.64 E-value=4.7 Score=40.04 Aligned_cols=126 Identities=20% Similarity=0.111 Sum_probs=60.0
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecH-----HH
Q 002357 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT-----EI 168 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp-----e~ 168 (931)
+.|--..|=|||.+|+=-+++++..|.||+++.=.|--...=-..+-+.++++.+...+... +.-+.+ ..
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~~g~~f-----~~~~~~~~~~~~~ 80 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKLPNVEIERFGKGF-----VWRMNEEEEDRAA 80 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGGT--EEEE--TT---------GGGHHHHHHH
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhCCeEEEEEcCCcc-----cccCCCcHHHHHH
Confidence 55666789999999888888899999999999877762222222233344444443332211 111122 12
Q ss_pred HHHHHhcCccc--cCcccEEEEeccccCCCCCchH--HHHHHHHhcCCCceEEEeccCCC
Q 002357 169 LRGMLYRGSEV--LKEVAWVIFDEIHYMKDRERGV--VWEESIIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 169 L~~~l~~~~~~--l~~l~~vViDEaH~l~~~~~g~--~~~~ii~~l~~~~q~v~lSAT~~ 224 (931)
..+.+...... -..+++||+||+=...+.+.-. .+..++..-|...-+|+..-.+|
T Consensus 81 ~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~ 140 (172)
T PF02572_consen 81 AREGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAP 140 (172)
T ss_dssp HHHHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCC
Confidence 22222222222 3579999999998776554321 12233344466666777665554
No 494
>PRK05580 primosome assembly protein PriA; Validated
Probab=82.55 E-value=9.8 Score=46.81 Aligned_cols=75 Identities=15% Similarity=0.032 Sum_probs=59.9
Q ss_pred CCcEEEEecCHHHHHHHHHHhccC-CCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHH
Q 002357 329 FQPVIVFSFSRRECEQHAMSMSKL-DFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK 407 (931)
Q Consensus 329 ~~~~IVF~~sr~~~~~la~~L~~~-~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R 407 (931)
+.++||.++++.-+.++.+.+.+. +. .++.+||++++.+|
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~---------------------------------------~v~~~~s~~s~~~r 230 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGA---------------------------------------PVAVLHSGLSDGER 230 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCC---------------------------------------CEEEEECCCCHHHH
Confidence 568999999999999998888642 11 27899999999999
Q ss_pred HHHHHHHhcCCceEEEecchhhcccCCCCcEEEEec
Q 002357 408 ELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA 443 (931)
Q Consensus 408 ~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~ 443 (931)
........+|..+|+|+|..... +.+++..+||..
T Consensus 231 ~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvD 265 (679)
T PRK05580 231 LDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVD 265 (679)
T ss_pred HHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEE
Confidence 99988899999999999985432 556677776654
No 495
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=82.53 E-value=3.3 Score=46.80 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCCcHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~ 109 (931)
.+.+++.||+|+|||..+-
T Consensus 156 p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3569999999999998764
No 496
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=82.36 E-value=4.9 Score=50.60 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=0.0
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhh--HHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKAL--SNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILR 170 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL--~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~ 170 (931)
.+++.+|||+|||..+ -++...+..+...++...--+. .....+-+....+.+|.-.|+ .|.
T Consensus 598 ~~lf~Gp~GvGKT~lA-~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g---------------~L~ 661 (852)
T TIGR03345 598 VFLLVGPSGVGKTETA-LALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGG---------------VLT 661 (852)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccc---------------hHH
Q ss_pred HHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCc-------------eEEEeccCCCChHHHHHHHH
Q 002357 171 GMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAI-------------KMVFLSATMSNATQFAEWIC 234 (931)
Q Consensus 171 ~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~-------------q~v~lSAT~~n~~e~~~~l~ 234 (931)
..+.+ ...++|+|||++.+. ..+++.++..+.... -++.||..++ ...|..
T Consensus 662 ~~v~~-----~p~svvllDEieka~----~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg----~~~~~~ 725 (852)
T TIGR03345 662 EAVRR-----KPYSVVLLDEVEKAH----PDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAG----SDLIMA 725 (852)
T ss_pred HHHHh-----CCCcEEEEechhhcC----HHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCc----hHHHHH
No 497
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=82.25 E-value=1.5 Score=52.66 Aligned_cols=58 Identities=12% Similarity=-0.088 Sum_probs=44.9
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEe
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMT 150 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~t 150 (931)
.+++++.||||||||+.+.+|-+.. -+..+||+=|--++........++.+..|-++.
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~--~~~S~VV~DpKGEl~~~Ta~~R~~~G~~V~vfd 215 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLF--WEDSVVVHDIKLENYELTSGWREKQGQKVFVWE 215 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHh--CCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEe
Confidence 3579999999999999988886654 367899999999999887766665433565543
No 498
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=82.20 E-value=1.7 Score=51.97 Aligned_cols=54 Identities=31% Similarity=0.324 Sum_probs=42.9
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchh--hHHHHHHHHHHhc
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKA--LSNQKYRELHQEF 143 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~ka--L~~Q~~~~l~~~~ 143 (931)
...+.+|.|+||+|||....+.+.+.++.+..++++=|-.. |..-++...+...
T Consensus 179 ~~gHtlV~GtTGsGKT~l~~~li~q~i~~g~~vi~fDpkgD~el~~~~~~~~~~~G 234 (643)
T TIGR03754 179 RVGHTLVLGTTRVGKTRLAELLITQDIRRGDVVIVFDPKGDADLLKRMYAEAKRAG 234 (643)
T ss_pred ccCceEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhC
Confidence 35689999999999999999989999998999999999874 4555555554443
No 499
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=82.13 E-value=4.1 Score=50.72 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCCcHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~ 109 (931)
++.+++.+|+|+|||..+-
T Consensus 212 ~~giLL~GppGtGKT~lar 230 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAK 230 (733)
T ss_pred CceEEEECCCCCChHHHHH
Confidence 4789999999999998753
No 500
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=82.11 E-value=14 Score=43.74 Aligned_cols=133 Identities=17% Similarity=0.194 Sum_probs=81.2
Q ss_pred CHHHHHHHHHH----hc---CCcEEEEcCCCCCcHHHHHHHHHHHHhCC-CEEEEEcCchhhHHHHHHHHHHhcCCeEEE
Q 002357 78 DPFQRVSVACL----ER---NESVLVSAHTSAGKTAVAEYAIAMAFRDK-QRVIYTSPLKALSNQKYRELHQEFKDVGLM 149 (931)
Q Consensus 78 ~~~Q~~ai~~l----~~---g~~vlv~apTGsGKTl~~~l~i~~~l~~~-~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~ 149 (931)
|--|..|+..+ .. ..-+-+.|.-|-||+.+--++|+.+...| ..+.|++|.-+=..-.++-+.+-|...+.-
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~GysnIyvtSPspeNlkTlFeFv~kGfDaL~Yq 334 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFGYSNIYVTSPSPENLKTLFEFVFKGFDALEYQ 334 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcCcceEEEcCCChHHHHHHHHHHHcchhhhcch
Confidence 56688887543 22 23466889999999999999999998876 578888998776665555544444322210
Q ss_pred -eccc----ccCCC---------------CCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHh
Q 002357 150 -TGDV----TLSPN---------------ASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF 209 (931)
Q Consensus 150 -tGd~----~~~~~---------------~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~ 209 (931)
+-|. +.|++ -.|-...|. ....+...+++|+|||-.+. -+.+..+
T Consensus 335 eh~Dy~iI~s~np~fkkaivRInifr~hrQtIQYi~P~--------D~~kl~q~eLlVIDEAAAIP----Lplvk~L--- 399 (1011)
T KOG2036|consen 335 EHVDYDIIQSTNPDFKKAIVRINIFREHRQTIQYISPH--------DHQKLGQAELLVIDEAAAIP----LPLVKKL--- 399 (1011)
T ss_pred hhcchhhhhhcChhhhhhEEEEEEeccccceeEeeccc--------hhhhccCCcEEEechhhcCC----HHHHHHh---
Confidence 0010 11221 111122221 12346678999999998775 3333332
Q ss_pred cCCCceEEEeccCCCChH
Q 002357 210 LPPAIKMVFLSATMSNAT 227 (931)
Q Consensus 210 l~~~~q~v~lSAT~~n~~ 227 (931)
+ .+.+++|+.|++..+
T Consensus 400 i--gPylVfmaSTinGYE 415 (1011)
T KOG2036|consen 400 I--GPYLVFMASTINGYE 415 (1011)
T ss_pred h--cceeEEEeecccccc
Confidence 2 467899999997543
Done!