Query 002357
Match_columns 931
No_of_seqs 464 out of 3552
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 23:02:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xgj_A ATP-dependent RNA helic 100.0 1E-143 4E-148 1343.6 93.3 890 31-931 49-1010(1010)
2 3l9o_A ATP-dependent RNA helic 100.0 3E-146 1E-150 1378.6 69.7 886 37-931 153-1108(1108)
3 4a4z_A Antiviral helicase SKI2 100.0 2E-137 7E-142 1288.1 84.3 858 65-931 28-997 (997)
4 4f92_B U5 small nuclear ribonu 100.0 1.4E-50 4.7E-55 526.2 33.8 383 65-497 66-484 (1724)
5 4f92_B U5 small nuclear ribonu 100.0 1.3E-50 4.3E-55 526.6 28.1 370 74-498 923-1320(1724)
6 2zj8_A DNA helicase, putative 100.0 3.7E-47 1.3E-51 466.4 51.9 363 67-485 13-387 (720)
7 2va8_A SSO2462, SKI2-type heli 100.0 1E-46 3.6E-51 462.6 54.2 370 68-485 21-408 (715)
8 2p6r_A Afuhel308 helicase; pro 100.0 5.1E-46 1.8E-50 455.0 49.0 358 69-485 17-388 (702)
9 2db3_A ATP-dependent RNA helic 100.0 2.5E-45 8.6E-50 423.3 36.6 313 70-485 71-407 (434)
10 2j0s_A ATP-dependent RNA helic 100.0 2.5E-43 8.7E-48 404.4 32.7 322 70-493 52-390 (410)
11 3eiq_A Eukaryotic initiation f 100.0 3.5E-43 1.2E-47 403.5 29.5 316 69-485 54-387 (414)
12 1s2m_A Putative ATP-dependent 100.0 1.2E-42 4.1E-47 397.3 33.6 321 71-494 37-373 (400)
13 2i4i_A ATP-dependent RNA helic 100.0 9.5E-43 3.3E-47 400.4 32.4 313 71-485 31-383 (417)
14 3fht_A ATP-dependent RNA helic 100.0 5.7E-42 1.9E-46 393.1 35.6 324 71-491 41-385 (412)
15 3pey_A ATP-dependent RNA helic 100.0 2.3E-42 7.8E-47 393.8 31.6 318 71-485 21-356 (395)
16 1xti_A Probable ATP-dependent 100.0 5.3E-42 1.8E-46 390.6 34.5 322 70-493 23-365 (391)
17 3i5x_A ATP-dependent RNA helic 100.0 2E-42 6.8E-47 413.6 31.5 335 69-495 86-458 (563)
18 2z0m_A 337AA long hypothetical 100.0 4.9E-42 1.7E-46 382.4 29.8 302 70-483 9-321 (337)
19 3sqw_A ATP-dependent RNA helic 100.0 6.1E-42 2.1E-46 409.9 32.3 340 67-496 33-408 (579)
20 3fmp_B ATP-dependent RNA helic 100.0 3.2E-43 1.1E-47 411.8 18.7 325 71-492 108-453 (479)
21 1hv8_A Putative ATP-dependent 100.0 2.3E-41 8E-46 381.4 31.9 319 70-494 21-353 (367)
22 2v1x_A ATP-dependent DNA helic 100.0 2.6E-41 8.8E-46 401.3 32.3 325 65-495 32-383 (591)
23 3oiy_A Reverse gyrase helicase 100.0 9.2E-42 3.2E-46 391.9 25.7 308 65-485 10-365 (414)
24 1oyw_A RECQ helicase, ATP-depe 100.0 5.7E-41 2E-45 394.4 30.9 322 65-496 13-353 (523)
25 1fuu_A Yeast initiation factor 100.0 2.6E-42 8.9E-47 393.4 15.0 314 71-485 37-366 (394)
26 3fho_A ATP-dependent RNA helic 100.0 3.7E-41 1.3E-45 396.0 18.0 319 72-485 136-470 (508)
27 4a2p_A RIG-I, retinoic acid in 100.0 9.7E-39 3.3E-43 381.1 32.3 369 73-485 4-508 (556)
28 4ddu_A Reverse gyrase; topoiso 100.0 3.3E-38 1.1E-42 397.2 28.6 316 68-492 70-499 (1104)
29 3tbk_A RIG-I helicase domain; 100.0 1.2E-37 4E-42 371.5 31.1 369 74-485 2-507 (555)
30 1wp9_A ATP-dependent RNA helic 100.0 9E-37 3.1E-41 356.9 34.6 357 74-485 7-475 (494)
31 4a2q_A RIG-I, retinoic acid in 100.0 6.4E-37 2.2E-41 379.3 31.7 364 75-485 247-749 (797)
32 2ykg_A Probable ATP-dependent 100.0 4.4E-37 1.5E-41 376.9 29.3 371 70-485 6-516 (696)
33 4gl2_A Interferon-induced heli 100.0 5.3E-37 1.8E-41 376.3 29.3 368 73-485 4-520 (699)
34 4a2w_A RIG-I, retinoic acid in 100.0 7E-36 2.4E-40 373.7 29.2 365 74-485 246-749 (936)
35 1gku_B Reverse gyrase, TOP-RG; 100.0 1.4E-36 4.9E-41 382.9 21.9 316 65-494 46-465 (1054)
36 2fwr_A DNA repair protein RAD2 100.0 5.1E-36 1.8E-40 350.1 23.3 341 73-485 90-454 (472)
37 2oca_A DAR protein, ATP-depend 100.0 7.2E-36 2.5E-40 352.4 24.3 323 74-474 111-446 (510)
38 1gm5_A RECG; helicase, replica 100.0 2.6E-36 8.9E-41 365.4 20.5 308 65-484 357-696 (780)
39 2eyq_A TRCF, transcription-rep 100.0 1.1E-34 3.7E-39 367.7 32.1 308 66-485 593-922 (1151)
40 3rc3_A ATP-dependent RNA helic 100.0 3.1E-34 1E-38 342.3 28.6 309 69-498 121-456 (677)
41 1tf5_A Preprotein translocase 100.0 2.3E-34 8E-39 340.8 22.2 344 72-481 79-543 (844)
42 2jlq_A Serine protease subunit 100.0 8.4E-35 2.9E-39 336.4 17.5 289 77-484 5-310 (451)
43 3o8b_A HCV NS3 protease/helica 100.0 2.6E-34 8.9E-39 338.4 19.1 286 72-485 213-514 (666)
44 2whx_A Serine protease/ntpase/ 100.0 3.2E-34 1.1E-38 341.3 16.7 285 77-483 172-476 (618)
45 2xau_A PRE-mRNA-splicing facto 100.0 1.5E-33 5E-38 344.0 21.6 324 74-485 91-443 (773)
46 2fsf_A Preprotein translocase 100.0 9E-33 3.1E-37 326.1 25.3 356 71-484 69-584 (853)
47 1nkt_A Preprotein translocase 100.0 5.7E-32 1.9E-36 319.3 27.8 353 71-483 106-615 (922)
48 2v6i_A RNA helicase; membrane, 100.0 1.6E-32 5.4E-37 315.3 22.2 271 90-482 1-288 (431)
49 3dmq_A RNA polymerase-associat 100.0 1.9E-31 6.3E-36 334.1 32.4 374 74-495 151-625 (968)
50 1yks_A Genome polyprotein [con 100.0 1.2E-32 4E-37 317.0 18.2 273 87-482 4-296 (440)
51 2wv9_A Flavivirin protease NS2 100.0 4.7E-33 1.6E-37 333.3 15.2 288 76-482 215-530 (673)
52 3h1t_A Type I site-specific re 100.0 1.2E-31 4.3E-36 321.6 26.0 328 74-472 176-545 (590)
53 2z83_A Helicase/nucleoside tri 100.0 1.2E-32 4.2E-37 318.7 16.5 278 85-484 15-312 (459)
54 1z63_A Helicase of the SNF2/RA 100.0 4.4E-29 1.5E-33 293.6 32.9 344 73-485 34-453 (500)
55 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 8.7E-27 3E-31 289.2 31.3 410 75-561 270-792 (1038)
56 1z3i_X Similar to RAD54-like; 99.9 7.5E-26 2.6E-30 272.5 32.5 348 74-485 53-528 (644)
57 3mwy_W Chromo domain-containin 99.9 7.8E-26 2.7E-30 279.2 33.4 358 74-486 234-685 (800)
58 3fe2_A Probable ATP-dependent 99.9 7.9E-27 2.7E-31 247.1 16.8 175 70-246 44-238 (242)
59 3iuy_A Probable ATP-dependent 99.9 1.1E-26 3.8E-31 243.6 17.8 172 71-244 36-227 (228)
60 1q0u_A Bstdead; DEAD protein, 99.9 2.4E-26 8.1E-31 239.5 17.6 177 70-248 19-214 (219)
61 1vec_A ATP-dependent RNA helic 99.9 9.1E-26 3.1E-30 232.6 20.8 171 70-242 18-204 (206)
62 3fmo_B ATP-dependent RNA helic 99.9 1.2E-25 4E-30 245.3 19.4 172 71-244 108-296 (300)
63 3bor_A Human initiation factor 99.9 6.2E-26 2.1E-30 239.4 16.5 172 71-244 46-233 (237)
64 2oxc_A Probable ATP-dependent 99.9 8.1E-26 2.8E-30 237.4 17.1 174 68-243 37-226 (230)
65 2gxq_A Heat resistant RNA depe 99.9 1.5E-25 5.2E-30 231.1 18.2 172 70-243 16-203 (207)
66 1qde_A EIF4A, translation init 99.9 1.4E-25 4.8E-30 234.4 18.0 172 71-244 30-215 (224)
67 3ly5_A ATP-dependent RNA helic 99.9 8.1E-26 2.8E-30 242.0 16.2 158 71-228 70-247 (262)
68 2pl3_A Probable ATP-dependent 99.9 1.6E-25 5.5E-30 236.0 18.1 173 70-244 40-231 (236)
69 1wrb_A DJVLGB; RNA helicase, D 99.9 4.4E-25 1.5E-29 235.3 21.6 174 71-246 39-240 (253)
70 3jux_A Protein translocase sub 99.9 5.6E-24 1.9E-28 245.9 31.0 120 316-484 459-588 (822)
71 3ber_A Probable ATP-dependent 99.9 2.8E-25 9.6E-30 236.0 18.3 175 68-244 56-246 (249)
72 3dkp_A Probable ATP-dependent 99.9 4.9E-25 1.7E-29 233.8 17.3 175 70-246 44-241 (245)
73 1t6n_A Probable ATP-dependent 99.9 8.9E-25 3.1E-29 227.7 17.5 172 70-243 29-218 (220)
74 1c4o_A DNA nucleotide excision 99.9 9.3E-23 3.2E-27 245.3 27.0 112 328-485 438-550 (664)
75 2d7d_A Uvrabc system protein B 99.9 1.8E-20 6.2E-25 225.3 32.1 112 328-485 444-556 (661)
76 2ipc_A Preprotein translocase 99.9 2E-20 7E-25 220.1 28.1 124 70-195 73-215 (997)
77 3b6e_A Interferon-induced heli 99.9 3.1E-21 1.1E-25 199.9 14.5 151 72-222 29-216 (216)
78 1rif_A DAR protein, DNA helica 99.8 1.1E-20 3.8E-25 204.5 16.1 147 75-228 112-267 (282)
79 2vl7_A XPD; helicase, unknown 99.8 3.1E-19 1.1E-23 210.4 26.8 120 73-195 4-188 (540)
80 2hjv_A ATP-dependent RNA helic 99.8 8.8E-20 3E-24 180.3 15.9 129 315-493 21-149 (163)
81 3llm_A ATP-dependent RNA helic 99.8 5.8E-20 2E-24 193.2 14.6 159 71-234 56-228 (235)
82 3eaq_A Heat resistant RNA depe 99.8 1.5E-19 5E-24 186.7 16.3 129 314-492 16-144 (212)
83 2rb4_A ATP-dependent RNA helic 99.8 1.2E-19 4.2E-24 181.5 15.0 119 318-485 23-147 (175)
84 1t5i_A C_terminal domain of A 99.8 6.6E-20 2.3E-24 182.8 12.5 122 315-485 17-138 (172)
85 1fuk_A Eukaryotic initiation f 99.8 2.2E-19 7.7E-24 177.8 12.4 121 316-485 17-137 (165)
86 2fz4_A DNA repair protein RAD2 99.8 9.5E-19 3.2E-23 183.8 15.7 142 72-227 89-232 (237)
87 2jgn_A DBX, DDX3, ATP-dependen 99.8 4.4E-19 1.5E-23 178.9 12.6 122 315-485 31-153 (185)
88 3i32_A Heat resistant RNA depe 99.8 9.9E-19 3.4E-23 189.2 16.1 129 314-492 13-141 (300)
89 2p6n_A ATP-dependent RNA helic 99.8 1.1E-18 3.7E-23 176.9 14.7 124 315-488 41-164 (191)
90 3crv_A XPD/RAD3 related DNA he 99.8 8.7E-17 3E-21 190.2 26.5 120 74-196 1-187 (551)
91 2yjt_D ATP-dependent RNA helic 99.6 1.7E-19 6E-24 179.5 0.0 119 318-485 19-137 (170)
92 4a15_A XPD helicase, ATP-depen 99.6 2.9E-14 1E-18 169.9 22.8 68 75-142 2-74 (620)
93 1z5z_A Helicase of the SNF2/RA 99.5 3E-14 1E-18 152.2 11.1 125 314-485 95-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.6 1.8E-07 6.3E-12 111.2 12.4 139 78-222 151-298 (608)
95 3e1s_A Exodeoxyribonuclease V, 98.3 3.5E-06 1.2E-10 99.1 13.6 123 74-220 187-313 (574)
96 3upu_A ATP-dependent DNA helic 98.2 8.8E-06 3E-10 93.6 14.0 124 73-220 21-162 (459)
97 4b3f_X DNA-binding protein smu 98.1 1.3E-05 4.4E-10 96.3 12.0 69 76-144 189-258 (646)
98 2gk6_A Regulator of nonsense t 97.9 6.6E-05 2.3E-09 89.6 14.9 68 76-143 180-248 (624)
99 2xzl_A ATP-dependent helicase 97.9 4.3E-05 1.5E-09 93.3 12.2 68 76-143 360-428 (802)
100 2wjy_A Regulator of nonsense t 97.8 0.00016 5.3E-09 88.3 14.5 68 76-143 356-424 (800)
101 3lfu_A DNA helicase II; SF1 he 97.5 0.00076 2.6E-08 81.0 15.7 67 76-144 9-79 (647)
102 2o0j_A Terminase, DNA packagin 97.3 0.0014 4.9E-08 72.5 13.6 137 73-220 160-311 (385)
103 3cpe_A Terminase, DNA packagin 97.2 0.0029 9.8E-08 74.9 14.6 140 73-224 160-314 (592)
104 2b8t_A Thymidine kinase; deoxy 96.9 0.00072 2.5E-08 69.1 4.7 114 89-220 10-123 (223)
105 3vkw_A Replicase large subunit 96.8 0.0045 1.5E-07 69.3 11.1 107 93-222 163-269 (446)
106 1xx6_A Thymidine kinase; NESG, 96.8 0.0035 1.2E-07 62.4 8.9 108 90-219 7-114 (191)
107 3ec2_A DNA replication protein 96.7 0.0094 3.2E-07 58.5 11.7 119 78-226 16-146 (180)
108 2orw_A Thymidine kinase; TMTK, 96.7 0.0028 9.6E-08 62.8 7.8 40 90-129 2-41 (184)
109 3te6_A Regulatory protein SIR3 96.6 0.012 4.2E-07 63.2 12.2 123 90-227 44-177 (318)
110 2kjq_A DNAA-related protein; s 96.3 0.0049 1.7E-07 58.7 6.1 37 90-126 35-71 (149)
111 2v1u_A Cell division control p 96.2 0.01 3.4E-07 65.9 8.9 37 90-126 43-85 (387)
112 2j9r_A Thymidine kinase; TK1, 96.1 0.0096 3.3E-07 59.8 7.2 40 91-130 28-67 (214)
113 1l8q_A Chromosomal replication 96.0 0.021 7.1E-07 62.0 10.5 76 91-196 37-112 (324)
114 1pjr_A PCRA; DNA repair, DNA r 96.0 0.011 3.6E-07 71.8 8.8 104 76-192 11-120 (724)
115 2zpa_A Uncharacterized protein 96.0 0.021 7.1E-07 67.2 10.8 116 76-227 175-292 (671)
116 2qby_B CDC6 homolog 3, cell di 96.0 0.023 7.8E-07 63.0 10.8 36 91-126 45-88 (384)
117 1w4r_A Thymidine kinase; type 96.0 0.0079 2.7E-07 59.5 5.9 82 90-194 19-103 (195)
118 1uaa_A REP helicase, protein ( 95.9 0.017 5.7E-07 69.6 9.6 86 76-173 2-91 (673)
119 3bos_A Putative DNA replicatio 95.6 0.019 6.7E-07 58.7 7.5 38 90-127 51-88 (242)
120 2w58_A DNAI, primosome compone 95.6 0.07 2.4E-06 53.2 11.3 35 92-126 55-89 (202)
121 3u4q_A ATP-dependent helicase/ 95.5 0.015 5.2E-07 74.7 7.5 100 73-174 7-117 (1232)
122 1a5t_A Delta prime, HOLB; zinc 95.5 0.063 2.1E-06 58.4 11.5 133 77-222 3-147 (334)
123 2qgz_A Helicase loader, putati 95.3 0.041 1.4E-06 59.2 9.0 36 91-126 152-188 (308)
124 2orv_A Thymidine kinase; TP4A 95.3 0.032 1.1E-06 56.6 7.5 41 90-130 18-58 (234)
125 1fnn_A CDC6P, cell division co 95.2 0.036 1.2E-06 61.4 8.6 114 93-223 46-169 (389)
126 2p65_A Hypothetical protein PF 95.2 0.023 8E-07 55.4 6.2 21 91-111 43-63 (187)
127 3n70_A Transport activator; si 95.0 0.012 4.1E-07 55.6 3.3 21 89-109 22-42 (145)
128 2z4s_A Chromosomal replication 95.0 0.081 2.8E-06 59.9 10.6 77 91-197 130-209 (440)
129 2bjv_A PSP operon transcriptio 94.9 0.059 2E-06 56.4 8.8 22 89-110 27-48 (265)
130 1jbk_A CLPB protein; beta barr 94.9 0.1 3.5E-06 50.8 10.1 20 91-110 43-62 (195)
131 1g5t_A COB(I)alamin adenosyltr 94.8 0.12 4.3E-06 51.0 10.0 40 90-129 27-66 (196)
132 2r2a_A Uncharacterized protein 94.8 0.058 2E-06 53.8 7.8 39 93-131 7-50 (199)
133 3e2i_A Thymidine kinase; Zn-bi 94.7 0.035 1.2E-06 55.7 5.8 42 89-130 26-67 (219)
134 2qby_A CDC6 homolog 1, cell di 94.6 0.068 2.3E-06 58.9 8.6 36 91-126 45-83 (386)
135 3co5_A Putative two-component 94.5 0.016 5.6E-07 54.5 2.7 22 87-108 23-44 (143)
136 3kl4_A SRP54, signal recogniti 94.4 0.51 1.7E-05 52.8 15.0 131 92-234 98-235 (433)
137 3syl_A Protein CBBX; photosynt 94.3 0.1 3.4E-06 55.9 9.0 18 92-109 68-85 (309)
138 1d2n_A N-ethylmaleimide-sensit 94.3 0.18 6E-06 52.9 10.5 18 92-109 65-82 (272)
139 1ojl_A Transcriptional regulat 93.7 0.067 2.3E-06 57.4 5.9 22 89-110 23-44 (304)
140 1sxj_A Activator 1 95 kDa subu 93.6 0.23 7.8E-06 57.5 10.8 34 92-128 78-111 (516)
141 2chg_A Replication factor C sm 93.5 0.29 9.8E-06 48.9 10.2 19 92-110 39-57 (226)
142 2q6t_A DNAB replication FORK h 93.5 0.15 5.2E-06 57.8 8.8 107 89-197 198-325 (444)
143 2cvh_A DNA repair and recombin 93.3 0.19 6.4E-06 50.6 8.4 38 89-129 18-55 (220)
144 4a1f_A DNAB helicase, replicat 93.3 0.053 1.8E-06 58.8 4.4 107 89-196 44-170 (338)
145 3u61_B DNA polymerase accessor 93.2 0.11 3.9E-06 55.9 6.9 40 181-220 104-143 (324)
146 3h4m_A Proteasome-activating n 92.9 0.25 8.6E-06 52.0 9.0 20 90-109 50-69 (285)
147 2w0m_A SSO2452; RECA, SSPF, un 92.9 0.55 1.9E-05 47.4 11.2 39 89-127 21-59 (235)
148 3bh0_A DNAB-like replicative h 92.8 0.46 1.6E-05 51.0 11.0 107 88-196 65-195 (315)
149 2px0_A Flagellar biosynthesis 92.8 1.1 3.9E-05 47.4 13.9 125 90-234 104-234 (296)
150 1w5s_A Origin recognition comp 92.8 0.22 7.5E-06 55.5 8.6 36 91-126 50-93 (412)
151 1iqp_A RFCS; clamp loader, ext 92.7 0.36 1.2E-05 51.7 10.0 17 93-109 48-64 (327)
152 3eie_A Vacuolar protein sortin 92.6 0.19 6.4E-06 54.3 7.5 33 91-126 51-83 (322)
153 3uk6_A RUVB-like 2; hexameric 92.6 0.36 1.2E-05 52.9 10.0 26 92-118 71-96 (368)
154 3pfi_A Holliday junction ATP-d 92.6 0.3 1E-05 52.9 9.2 19 92-110 56-74 (338)
155 1xwi_A SKD1 protein; VPS4B, AA 92.5 0.24 8.3E-06 53.4 8.1 18 92-109 46-63 (322)
156 1njg_A DNA polymerase III subu 92.5 0.67 2.3E-05 46.7 11.2 18 93-110 47-64 (250)
157 2r6a_A DNAB helicase, replicat 92.4 0.29 9.8E-06 55.6 9.0 50 89-139 201-251 (454)
158 1u94_A RECA protein, recombina 92.4 0.24 8.3E-06 54.1 8.0 90 90-195 62-154 (356)
159 3bgw_A DNAB-like replicative h 92.2 0.35 1.2E-05 54.7 9.3 106 89-196 195-324 (444)
160 3vfd_A Spastin; ATPase, microt 92.2 0.24 8.1E-06 55.1 7.8 34 91-127 148-181 (389)
161 2qz4_A Paraplegin; AAA+, SPG7, 92.2 0.46 1.6E-05 49.1 9.7 19 91-109 39-57 (262)
162 3b9p_A CG5977-PA, isoform A; A 91.9 0.46 1.6E-05 50.3 9.5 19 91-109 54-72 (297)
163 1sxj_E Activator 1 40 kDa subu 91.7 0.34 1.1E-05 52.8 8.3 44 180-224 132-175 (354)
164 1n0w_A DNA repair protein RAD5 91.6 0.56 1.9E-05 47.8 9.5 41 89-129 22-68 (243)
165 1sxj_D Activator 1 41 kDa subu 91.6 0.42 1.4E-05 51.9 9.0 24 86-109 51-76 (353)
166 1sxj_C Activator 1 40 kDa subu 91.6 0.28 9.7E-06 53.2 7.5 39 181-220 109-147 (340)
167 1xp8_A RECA protein, recombina 91.5 0.31 1.1E-05 53.5 7.6 90 90-195 73-165 (366)
168 1hqc_A RUVB; extended AAA-ATPa 91.4 0.36 1.2E-05 51.8 8.0 19 91-109 38-56 (324)
169 2zr9_A Protein RECA, recombina 91.4 0.34 1.2E-05 52.9 7.8 42 90-131 60-101 (349)
170 2gno_A DNA polymerase III, gam 91.4 0.58 2E-05 49.9 9.5 37 180-220 80-119 (305)
171 3dm5_A SRP54, signal recogniti 91.2 1.1 3.6E-05 50.3 11.7 119 92-224 101-225 (443)
172 3d8b_A Fidgetin-like protein 1 90.9 0.25 8.4E-06 54.2 6.2 34 91-127 117-150 (357)
173 3hgt_A HDA1 complex subunit 3; 90.8 0.83 2.8E-05 48.7 9.8 117 317-485 114-237 (328)
174 2qp9_X Vacuolar protein sortin 90.8 0.65 2.2E-05 50.7 9.4 32 91-125 84-115 (355)
175 3pvs_A Replication-associated 90.7 0.28 9.7E-06 55.4 6.5 18 92-109 51-68 (447)
176 4fcw_A Chaperone protein CLPB; 90.3 0.35 1.2E-05 51.5 6.7 33 92-125 48-81 (311)
177 1nlf_A Regulatory protein REPA 90.3 1.3 4.4E-05 46.4 10.9 44 88-131 27-80 (279)
178 2z43_A DNA repair and recombin 90.3 0.16 5.5E-06 54.9 3.8 42 90-131 106-153 (324)
179 3hr8_A Protein RECA; alpha and 90.2 0.47 1.6E-05 51.7 7.4 44 91-134 61-104 (356)
180 1sxj_B Activator 1 37 kDa subu 89.4 0.84 2.9E-05 48.7 8.8 18 93-110 44-61 (323)
181 1jr3_A DNA polymerase III subu 89.3 0.93 3.2E-05 49.5 9.2 23 93-116 40-62 (373)
182 3t15_A Ribulose bisphosphate c 89.3 0.56 1.9E-05 49.8 7.1 32 92-126 37-68 (293)
183 2i3b_A HCR-ntpase, human cance 88.8 0.77 2.6E-05 45.2 7.2 44 180-224 103-146 (189)
184 3cmu_A Protein RECA, recombina 88.8 0.56 1.9E-05 61.9 7.7 95 85-195 1415-1518(2050)
185 2zan_A Vacuolar protein sortin 88.3 0.45 1.6E-05 53.8 5.8 36 91-128 167-202 (444)
186 1v5w_A DMC1, meiotic recombina 87.7 0.81 2.8E-05 49.7 7.2 48 84-131 110-168 (343)
187 2ce7_A Cell division protein F 87.6 1.2 4E-05 50.6 8.7 18 92-109 50-67 (476)
188 2dr3_A UPF0273 protein PH0284; 87.4 0.5 1.7E-05 48.3 5.0 51 89-140 21-71 (247)
189 1q57_A DNA primase/helicase; d 86.8 0.97 3.3E-05 51.9 7.6 50 89-139 240-290 (503)
190 2fna_A Conserved hypothetical 86.7 11 0.00036 40.4 15.7 45 78-126 18-62 (357)
191 2chq_A Replication factor C sm 86.7 1.2 4.1E-05 47.3 7.8 17 93-109 40-56 (319)
192 3io5_A Recombination and repai 86.5 1.1 3.9E-05 47.5 7.1 88 93-195 30-124 (333)
193 3hjh_A Transcription-repair-co 86.2 1.9 6.6E-05 48.9 9.4 53 90-145 13-65 (483)
194 1vma_A Cell division protein F 85.9 2.2 7.4E-05 45.4 9.1 36 91-126 104-139 (306)
195 3hu3_A Transitional endoplasmi 85.7 0.92 3.2E-05 51.8 6.5 33 91-126 238-270 (489)
196 1qvr_A CLPB protein; coiled co 85.2 0.94 3.2E-05 55.8 6.7 22 91-112 191-212 (854)
197 2qen_A Walker-type ATPase; unk 85.1 2.3 7.7E-05 45.7 9.1 33 78-110 17-50 (350)
198 3cmw_A Protein RECA, recombina 84.6 1.5 5E-05 57.2 8.2 90 91-196 1431-1523(1706)
199 3pxi_A Negative regulator of g 84.6 1.7 5.8E-05 52.7 8.6 18 93-110 523-540 (758)
200 1e9r_A Conjugal transfer prote 84.1 0.89 3.1E-05 51.2 5.4 44 90-133 52-95 (437)
201 2vhj_A Ntpase P4, P4; non- hyd 84.0 0.56 1.9E-05 50.1 3.4 36 89-127 121-156 (331)
202 3i4u_A ATP-dependent RNA helic 83.9 8.4 0.00029 40.0 12.3 136 738-902 19-154 (270)
203 3m6a_A ATP-dependent protease 83.8 0.58 2E-05 54.4 3.7 20 90-109 107-126 (543)
204 3cmw_A Protein RECA, recombina 83.6 1.3 4.5E-05 57.7 7.1 94 90-196 33-126 (1706)
205 3lda_A DNA repair protein RAD5 83.4 2.7 9.2E-05 46.5 8.7 42 90-131 177-224 (400)
206 1ls1_A Signal recognition part 83.1 5.2 0.00018 42.2 10.6 94 90-195 97-193 (295)
207 1r6b_X CLPA protein; AAA+, N-t 82.9 4.4 0.00015 49.0 11.3 21 90-110 206-226 (758)
208 4b4t_H 26S protease regulatory 82.8 3 0.0001 46.7 8.8 18 91-108 243-260 (467)
209 1zu4_A FTSY; GTPase, signal re 82.8 3 0.0001 44.7 8.6 94 91-195 105-204 (320)
210 3k1j_A LON protease, ATP-depen 82.4 2 6.9E-05 50.5 7.7 30 86-116 55-84 (604)
211 1qvr_A CLPB protein; coiled co 82.2 1.1 3.7E-05 55.2 5.5 33 92-125 589-622 (854)
212 1ny5_A Transcriptional regulat 79.5 2.6 9E-05 46.5 6.9 86 89-195 158-244 (387)
213 2oap_1 GSPE-2, type II secreti 78.9 1.7 5.8E-05 49.8 5.3 48 77-125 245-293 (511)
214 2zts_A Putative uncharacterize 78.7 1.4 4.8E-05 44.8 4.2 53 89-142 28-81 (251)
215 4ag6_A VIRB4 ATPase, type IV s 78.6 1.7 6E-05 47.9 5.2 42 90-131 34-75 (392)
216 3cmu_A Protein RECA, recombina 78.2 2.6 8.8E-05 55.7 7.1 91 89-195 1079-1172(2050)
217 1pzn_A RAD51, DNA repair and r 78.2 3.8 0.00013 44.4 7.6 40 90-129 130-175 (349)
218 1p9r_A General secretion pathw 76.7 2.6 8.9E-05 46.9 5.8 47 78-125 152-201 (418)
219 3e70_C DPA, signal recognition 76.6 44 0.0015 35.6 15.3 125 90-225 128-255 (328)
220 1gm5_A RECG; helicase, replica 76.5 4.9 0.00017 48.6 8.5 82 328-444 416-498 (780)
221 2l8b_A Protein TRAI, DNA helic 76.4 2.9 9.8E-05 40.5 5.1 120 77-222 35-158 (189)
222 4dyq_A Gene 1 protein; GP1, oc 76.3 4 0.00014 37.8 6.1 65 851-916 13-79 (140)
223 2eyu_A Twitching motility prot 74.3 2.1 7.2E-05 44.4 4.0 21 88-108 22-42 (261)
224 2ffh_A Protein (FFH); SRP54, s 73.9 19 0.00064 40.0 11.8 119 91-223 98-222 (425)
225 3dzd_A Transcriptional regulat 72.3 3.8 0.00013 44.8 5.6 85 89-195 150-235 (368)
226 2yhs_A FTSY, cell division pro 72.1 22 0.00076 40.1 11.9 38 91-128 293-331 (503)
227 2r8r_A Sensor protein; KDPD, P 72.1 3.5 0.00012 41.5 4.8 112 93-220 8-124 (228)
228 2ehv_A Hypothetical protein PH 72.0 3 0.0001 42.3 4.6 41 88-128 27-68 (251)
229 1cr0_A DNA primase/helicase; R 70.6 3.8 0.00013 43.1 5.1 40 88-127 32-72 (296)
230 2gza_A Type IV secretion syste 70.5 2.5 8.7E-05 46.1 3.7 21 88-108 172-192 (361)
231 3oiy_A Reverse gyrase helicase 70.1 11 0.00039 41.4 9.1 81 327-443 62-146 (414)
232 3b85_A Phosphate starvation-in 69.3 4.9 0.00017 40.0 5.2 32 78-109 9-40 (208)
233 2ewv_A Twitching motility prot 68.9 3.5 0.00012 45.2 4.4 37 88-125 133-171 (372)
234 3cf2_A TER ATPase, transitiona 68.8 3.8 0.00013 49.4 5.0 18 91-108 511-528 (806)
235 3fkq_A NTRC-like two-domain pr 68.3 8.5 0.00029 42.0 7.4 93 95-191 148-268 (373)
236 3vaa_A Shikimate kinase, SK; s 68.3 2.3 7.8E-05 41.9 2.5 22 89-110 23-44 (199)
237 2yvu_A Probable adenylyl-sulfa 68.2 4.6 0.00016 39.1 4.7 36 90-125 12-47 (186)
238 2jgn_A DBX, DDX3, ATP-dependen 68.2 13 0.00043 36.1 7.9 81 101-188 29-120 (185)
239 3u4q_B ATP-dependent helicase/ 67.6 7.6 0.00026 49.5 7.8 69 94-173 4-75 (1166)
240 3jvv_A Twitching mobility prot 67.3 4.2 0.00014 44.2 4.6 37 89-126 121-159 (356)
241 1kgd_A CASK, peripheral plasma 66.9 3.2 0.00011 40.1 3.2 20 90-109 4-23 (180)
242 2xau_A PRE-mRNA-splicing facto 66.6 32 0.0011 41.5 12.6 61 737-798 489-550 (773)
243 3a8t_A Adenylate isopentenyltr 66.3 2.7 9.3E-05 45.1 2.7 18 91-108 40-57 (339)
244 2hjv_A ATP-dependent RNA helic 66.1 23 0.00078 33.2 9.1 66 117-188 33-109 (163)
245 1fuk_A Eukaryotic initiation f 65.4 23 0.0008 33.1 9.1 66 118-189 29-105 (165)
246 3tau_A Guanylate kinase, GMP k 65.4 3.5 0.00012 40.9 3.2 21 89-109 6-26 (208)
247 3trf_A Shikimate kinase, SK; a 65.3 2.8 9.7E-05 40.4 2.5 20 91-110 5-24 (185)
248 1qhx_A CPT, protein (chloramph 65.0 2.9 9.8E-05 40.0 2.5 19 91-109 3-21 (178)
249 4b4t_J 26S protease regulatory 64.4 13 0.00043 41.0 7.6 18 91-108 182-199 (405)
250 3exa_A TRNA delta(2)-isopenten 64.1 2.7 9.4E-05 44.6 2.2 17 92-108 4-20 (322)
251 3nbx_X ATPase RAVA; AAA+ ATPas 64.0 3.7 0.00013 46.8 3.5 27 82-108 32-58 (500)
252 4b4t_K 26S protease regulatory 63.8 14 0.00046 41.2 7.9 17 92-108 207-223 (428)
253 2c9o_A RUVB-like 1; hexameric 63.6 5.4 0.00018 45.0 4.7 76 92-196 64-140 (456)
254 2qmh_A HPR kinase/phosphorylas 63.2 3.7 0.00013 40.5 2.8 19 90-108 33-51 (205)
255 2pt7_A CAG-ALFA; ATPase, prote 63.1 3.3 0.00011 44.6 2.6 39 88-127 168-206 (330)
256 1xjc_A MOBB protein homolog; s 63.0 7.3 0.00025 37.3 4.8 34 93-126 6-39 (169)
257 3foz_A TRNA delta(2)-isopenten 62.7 3.1 0.00011 44.0 2.3 16 93-108 12-27 (316)
258 1c9k_A COBU, adenosylcobinamid 62.7 3.7 0.00012 39.9 2.6 38 94-135 2-39 (180)
259 1lvg_A Guanylate kinase, GMP k 62.6 4.1 0.00014 40.1 3.1 20 90-109 3-22 (198)
260 2r44_A Uncharacterized protein 62.6 3.3 0.00011 44.4 2.6 25 85-109 40-64 (331)
261 1ofh_A ATP-dependent HSL prote 62.6 6.6 0.00022 41.2 5.0 19 91-109 50-68 (310)
262 3uie_A Adenylyl-sulfate kinase 62.6 6.7 0.00023 38.4 4.7 33 77-110 12-44 (200)
263 3hws_A ATP-dependent CLP prote 62.4 5.6 0.00019 43.2 4.5 20 90-109 50-69 (363)
264 4b4t_M 26S protease regulatory 62.3 6.6 0.00022 43.8 5.0 18 91-108 215-232 (434)
265 2i1q_A DNA repair and recombin 62.0 6.8 0.00023 41.8 5.0 52 90-141 97-165 (322)
266 1rj9_A FTSY, signal recognitio 61.8 7.4 0.00025 41.2 5.1 36 90-125 101-136 (304)
267 3lw7_A Adenylate kinase relate 61.7 3.3 0.00011 39.2 2.2 19 93-111 3-21 (179)
268 2qor_A Guanylate kinase; phosp 61.6 4.1 0.00014 40.2 2.9 21 88-108 9-29 (204)
269 1y63_A LMAJ004144AAA protein; 61.4 3.8 0.00013 39.7 2.5 20 90-109 9-28 (184)
270 2rb4_A ATP-dependent RNA helic 61.4 14 0.00047 35.2 6.6 65 118-188 33-108 (175)
271 2eyq_A TRCF, transcription-rep 61.3 22 0.00075 45.0 10.1 82 328-444 651-733 (1151)
272 2j41_A Guanylate kinase; GMP, 61.1 4.5 0.00015 39.7 3.1 22 88-109 3-24 (207)
273 3tr0_A Guanylate kinase, GMP k 61.0 4.5 0.00015 39.7 3.1 20 89-108 5-24 (205)
274 4b4t_L 26S protease subunit RP 61.0 7.2 0.00024 43.5 5.0 18 91-108 215-232 (437)
275 4a74_A DNA repair and recombin 60.9 7.6 0.00026 38.7 4.9 41 89-129 23-69 (231)
276 3eaq_A Heat resistant RNA depe 60.8 28 0.00095 34.4 9.0 66 117-188 29-105 (212)
277 2ze6_A Isopentenyl transferase 60.7 3.4 0.00012 42.5 2.2 16 93-108 3-18 (253)
278 1zp6_A Hypothetical protein AT 60.6 3.2 0.00011 40.2 1.9 22 88-109 6-27 (191)
279 3ney_A 55 kDa erythrocyte memb 60.1 5.2 0.00018 39.4 3.2 20 89-108 17-36 (197)
280 3iij_A Coilin-interacting nucl 59.7 4.4 0.00015 38.9 2.7 22 89-110 9-30 (180)
281 1lv7_A FTSH; alpha/beta domain 59.4 8.6 0.0003 39.3 5.1 19 91-109 45-63 (257)
282 3cf0_A Transitional endoplasmi 58.9 4 0.00014 43.2 2.4 34 90-126 48-81 (301)
283 1kag_A SKI, shikimate kinase I 58.8 4.5 0.00015 38.4 2.5 19 91-109 4-22 (173)
284 3b9q_A Chloroplast SRP recepto 58.6 8 0.00027 40.9 4.7 39 90-128 99-138 (302)
285 3bs4_A Uncharacterized protein 58.4 7.3 0.00025 40.2 4.2 52 90-142 20-71 (260)
286 1nks_A Adenylate kinase; therm 58.2 9 0.00031 36.8 4.7 34 93-128 3-37 (194)
287 4ddu_A Reverse gyrase; topoiso 58.2 18 0.00061 45.6 8.5 82 327-444 119-204 (1104)
288 2pez_A Bifunctional 3'-phospho 58.1 9.1 0.00031 36.6 4.7 21 90-110 4-24 (179)
289 1m7g_A Adenylylsulfate kinase; 57.8 9 0.00031 37.8 4.7 48 77-126 12-61 (211)
290 2p6n_A ATP-dependent RNA helic 57.7 25 0.00086 34.1 7.9 65 118-188 53-128 (191)
291 1kht_A Adenylate kinase; phosp 57.6 4.6 0.00016 38.9 2.4 20 91-110 3-22 (192)
292 1rz3_A Hypothetical protein rb 57.4 8.9 0.0003 37.6 4.5 20 91-110 22-41 (201)
293 1p4x_A Staphylococcal accessor 57.3 31 0.0011 35.1 8.8 122 738-891 66-200 (250)
294 2v3c_C SRP54, signal recogniti 57.3 6.7 0.00023 43.8 3.9 35 92-126 100-134 (432)
295 2z0h_A DTMP kinase, thymidylat 56.8 11 0.00036 36.5 5.0 31 94-124 3-33 (197)
296 3a4m_A L-seryl-tRNA(SEC) kinas 56.5 9.7 0.00033 39.1 4.8 36 91-126 4-39 (260)
297 3cm0_A Adenylate kinase; ATP-b 56.5 3.7 0.00013 39.6 1.5 21 90-110 3-23 (186)
298 3idw_A Actin cytoskeleton-regu 56.4 6.6 0.00022 31.3 2.5 25 870-894 42-66 (72)
299 1j8m_F SRP54, signal recogniti 56.0 8.9 0.00031 40.4 4.5 93 91-195 98-193 (297)
300 1z6g_A Guanylate kinase; struc 55.9 6.7 0.00023 39.2 3.4 21 88-108 20-40 (218)
301 3d3q_A TRNA delta(2)-isopenten 55.8 6.2 0.00021 42.4 3.2 16 93-108 9-24 (340)
302 3crm_A TRNA delta(2)-isopenten 55.7 6.2 0.00021 42.1 3.2 16 93-108 7-22 (323)
303 1tf7_A KAIC; homohexamer, hexa 55.7 9.8 0.00033 43.7 5.2 51 88-139 278-328 (525)
304 3kb2_A SPBC2 prophage-derived 55.7 4.8 0.00016 38.0 2.2 18 93-110 3-20 (173)
305 2xxa_A Signal recognition part 55.3 9.2 0.00032 42.7 4.7 91 92-194 101-195 (433)
306 4eun_A Thermoresistant glucoki 55.2 5.5 0.00019 39.1 2.5 22 89-110 27-48 (200)
307 3a00_A Guanylate kinase, GMP k 55.1 6.9 0.00023 37.9 3.2 18 91-108 1-18 (186)
308 1knq_A Gluconate kinase; ALFA/ 54.7 4.8 0.00016 38.4 2.0 21 90-110 7-27 (175)
309 1znw_A Guanylate kinase, GMP k 54.6 5.7 0.0002 39.2 2.6 22 87-108 16-37 (207)
310 1ex7_A Guanylate kinase; subst 54.6 7.7 0.00026 37.8 3.4 20 158-177 47-66 (186)
311 1ly1_A Polynucleotide kinase; 54.5 5.2 0.00018 38.1 2.2 17 93-109 4-20 (181)
312 2v9p_A Replication protein E1; 54.4 6.5 0.00022 41.6 3.1 35 89-126 124-158 (305)
313 2c95_A Adenylate kinase 1; tra 53.6 6.8 0.00023 37.9 2.9 24 88-111 6-29 (196)
314 3eph_A TRNA isopentenyltransfe 53.5 7.1 0.00024 42.9 3.2 16 93-108 4-19 (409)
315 2og2_A Putative signal recogni 53.3 11 0.00036 41.0 4.6 38 91-128 157-195 (359)
316 4b4t_I 26S protease regulatory 53.2 12 0.00041 41.4 5.0 18 91-108 216-233 (437)
317 2o8x_A Probable RNA polymerase 53.0 15 0.00053 28.6 4.5 50 851-900 16-66 (70)
318 1tue_A Replication protein E1; 52.9 7.1 0.00024 38.7 2.8 41 74-116 38-82 (212)
319 4gp7_A Metallophosphoesterase; 52.7 5.4 0.00019 38.1 2.0 21 89-109 7-27 (171)
320 1s96_A Guanylate kinase, GMP k 52.6 7.8 0.00027 38.8 3.2 22 87-108 12-33 (219)
321 1z6t_A APAF-1, apoptotic prote 52.1 42 0.0014 38.8 9.9 34 78-111 129-167 (591)
322 3of5_A Dethiobiotin synthetase 52.0 12 0.00041 37.7 4.5 35 93-127 6-41 (228)
323 1um8_A ATP-dependent CLP prote 52.0 8.5 0.00029 42.0 3.7 19 91-109 72-90 (376)
324 4akg_A Glutathione S-transfera 51.8 18 0.0006 49.7 7.2 64 71-134 899-968 (2695)
325 1nij_A Hypothetical protein YJ 51.0 11 0.00038 40.1 4.3 34 93-128 6-39 (318)
326 1nn5_A Similar to deoxythymidy 51.0 15 0.00052 35.9 5.1 35 89-123 7-41 (215)
327 1zuh_A Shikimate kinase; alpha 50.7 7.6 0.00026 36.7 2.7 20 92-111 8-27 (168)
328 2ius_A DNA translocase FTSK; n 50.6 15 0.0005 41.9 5.3 25 90-114 166-190 (512)
329 2rhm_A Putative kinase; P-loop 50.5 6.1 0.00021 38.2 2.0 20 91-110 5-24 (193)
330 3c8u_A Fructokinase; YP_612366 50.3 6.5 0.00022 38.8 2.2 19 90-108 21-39 (208)
331 1gvn_B Zeta; postsegregational 50.0 6.4 0.00022 41.3 2.2 18 92-109 34-51 (287)
332 2i4i_A ATP-dependent RNA helic 50.0 34 0.0012 37.3 8.3 72 111-188 268-350 (417)
333 2pbr_A DTMP kinase, thymidylat 49.9 15 0.00052 35.2 4.8 32 93-124 2-33 (195)
334 1tc3_C Protein (TC3 transposas 49.9 12 0.00043 26.5 3.2 34 856-889 12-45 (51)
335 2plr_A DTMP kinase, probable t 49.3 22 0.00074 34.6 5.9 22 90-111 3-24 (213)
336 1tev_A UMP-CMP kinase; ploop, 48.9 6.6 0.00023 37.9 1.9 20 91-110 3-22 (196)
337 1zd8_A GTP:AMP phosphotransfer 48.8 7.5 0.00025 38.9 2.4 21 90-110 6-26 (227)
338 2bwj_A Adenylate kinase 5; pho 48.5 9.5 0.00032 37.0 3.0 23 88-110 9-31 (199)
339 1np6_A Molybdopterin-guanine d 48.4 17 0.00059 34.8 4.8 18 92-109 7-24 (174)
340 2bdt_A BH3686; alpha-beta prot 48.3 5.9 0.0002 38.3 1.5 19 92-110 3-21 (189)
341 2iyv_A Shikimate kinase, SK; t 48.1 8.5 0.00029 36.9 2.6 19 92-110 3-21 (184)
342 1byi_A Dethiobiotin synthase; 47.9 18 0.0006 35.8 5.0 33 95-127 6-38 (224)
343 3t61_A Gluconokinase; PSI-biol 47.6 7.7 0.00026 38.0 2.2 19 92-110 19-37 (202)
344 2v54_A DTMP kinase, thymidylat 47.5 8.6 0.00029 37.5 2.5 21 90-110 3-23 (204)
345 2r62_A Cell division protease 47.4 6.4 0.00022 40.5 1.7 19 91-109 44-62 (268)
346 2j37_W Signal recognition part 47.4 13 0.00044 42.3 4.3 118 93-224 103-226 (504)
347 2wwf_A Thymidilate kinase, put 47.4 19 0.00064 35.2 5.1 22 90-111 9-30 (212)
348 2d7d_A Uvrabc system protein B 47.4 1E+02 0.0034 36.3 12.2 78 112-195 438-526 (661)
349 3lnc_A Guanylate kinase, GMP k 47.3 7.8 0.00027 38.9 2.2 20 89-108 25-44 (231)
350 1g8p_A Magnesium-chelatase 38 47.1 5.9 0.0002 42.5 1.3 20 90-109 44-63 (350)
351 1ixz_A ATP-dependent metallopr 47.0 8.2 0.00028 39.3 2.4 18 92-109 50-67 (254)
352 3nwj_A ATSK2; P loop, shikimat 47.0 12 0.00041 38.3 3.6 21 90-110 47-67 (250)
353 3fb4_A Adenylate kinase; psych 46.8 11 0.00039 37.1 3.4 19 93-111 2-20 (216)
354 2woo_A ATPase GET3; tail-ancho 46.8 16 0.00055 39.0 4.7 35 92-126 20-54 (329)
355 1aky_A Adenylate kinase; ATP:A 46.7 13 0.00044 36.9 3.8 22 90-111 3-24 (220)
356 3asz_A Uridine kinase; cytidin 46.7 7.5 0.00026 38.3 2.0 20 90-109 5-24 (211)
357 4edh_A DTMP kinase, thymidylat 46.6 18 0.0006 36.0 4.7 37 89-125 4-40 (213)
358 2cdn_A Adenylate kinase; phosp 46.3 9.2 0.00032 37.3 2.6 20 92-111 21-40 (201)
359 3zq6_A Putative arsenical pump 46.3 17 0.00057 38.8 4.8 36 93-128 16-51 (324)
360 3pxg_A Negative regulator of g 45.8 16 0.00054 41.3 4.7 21 90-110 200-220 (468)
361 1via_A Shikimate kinase; struc 45.8 13 0.00046 35.2 3.6 18 93-110 6-23 (175)
362 1zak_A Adenylate kinase; ATP:A 45.6 14 0.00046 36.8 3.7 22 90-111 4-25 (222)
363 1c4o_A DNA nucleotide excision 45.5 59 0.002 38.3 9.8 77 112-194 432-519 (664)
364 1u0j_A DNA replication protein 45.5 18 0.0006 37.4 4.5 33 77-109 84-122 (267)
365 1e6c_A Shikimate kinase; phosp 45.3 9.5 0.00032 36.0 2.4 19 92-110 3-21 (173)
366 3dl0_A Adenylate kinase; phosp 45.3 12 0.0004 37.0 3.2 18 93-110 2-19 (216)
367 1w36_B RECB, exodeoxyribonucle 45.3 26 0.0009 44.5 7.1 52 93-144 18-81 (1180)
368 1ihu_A Arsenical pump-driving 45.3 18 0.0006 42.2 5.2 36 91-126 8-43 (589)
369 2qt1_A Nicotinamide riboside k 45.3 9.1 0.00031 37.6 2.3 21 89-109 19-39 (207)
370 3qf7_A RAD50; ABC-ATPase, ATPa 44.6 13 0.00044 40.4 3.6 17 93-109 25-41 (365)
371 1oyw_A RECQ helicase, ATP-depe 44.5 31 0.001 39.5 6.9 75 329-442 65-145 (523)
372 3i32_A Heat resistant RNA depe 44.4 43 0.0015 35.1 7.5 65 118-188 27-102 (300)
373 2vli_A Antibiotic resistance p 44.3 8.3 0.00028 36.8 1.8 21 90-110 4-24 (183)
374 3ice_A Transcription terminati 43.8 41 0.0014 36.8 7.2 34 77-110 157-193 (422)
375 1t5i_A C_terminal domain of A 43.5 54 0.0018 30.9 7.5 65 118-188 30-105 (172)
376 1cke_A CK, MSSA, protein (cyti 43.5 11 0.00039 37.4 2.7 20 91-110 5-24 (227)
377 2v1x_A ATP-dependent DNA helic 43.4 30 0.001 40.2 6.7 75 329-442 84-171 (591)
378 2elh_A CG11849-PA, LD40883P; s 42.8 4.2 0.00014 34.1 -0.5 49 851-899 23-72 (87)
379 1g3q_A MIND ATPase, cell divis 42.7 19 0.00066 35.9 4.4 32 95-126 7-38 (237)
380 3ug7_A Arsenical pump-driving 42.7 20 0.00068 38.6 4.7 33 94-126 29-61 (349)
381 1gtv_A TMK, thymidylate kinase 42.5 8.2 0.00028 38.0 1.5 18 94-111 3-20 (214)
382 1ak2_A Adenylate kinase isoenz 42.4 16 0.00056 36.6 3.8 23 89-111 14-36 (233)
383 1qf9_A UMP/CMP kinase, protein 42.2 11 0.00039 36.0 2.5 19 93-111 8-26 (194)
384 3be4_A Adenylate kinase; malar 42.0 16 0.00056 36.1 3.6 21 91-111 5-25 (217)
385 1hyq_A MIND, cell division inh 41.9 22 0.00077 36.1 4.8 32 95-126 7-38 (263)
386 4e22_A Cytidylate kinase; P-lo 41.7 11 0.00039 38.4 2.5 21 89-109 25-45 (252)
387 2pt5_A Shikimate kinase, SK; a 41.7 13 0.00043 34.9 2.6 18 93-110 2-19 (168)
388 2iut_A DNA translocase FTSK; n 41.5 26 0.00091 40.2 5.6 38 91-128 214-255 (574)
389 1iy2_A ATP-dependent metallopr 41.4 11 0.00039 38.9 2.5 18 92-109 74-91 (278)
390 3fht_A ATP-dependent RNA helic 41.1 86 0.003 33.8 9.8 65 118-188 265-340 (412)
391 1ukz_A Uridylate kinase; trans 41.1 11 0.00038 36.7 2.2 18 92-109 16-33 (203)
392 4dzz_A Plasmid partitioning pr 41.0 19 0.00064 35.0 3.8 114 95-236 6-121 (206)
393 3tlx_A Adenylate kinase 2; str 40.9 15 0.00052 37.2 3.3 22 90-111 28-49 (243)
394 3p32_A Probable GTPase RV1496/ 40.9 23 0.00077 38.3 4.8 34 93-126 81-114 (355)
395 2x8a_A Nuclear valosin-contain 40.8 12 0.0004 38.9 2.4 17 92-108 45-61 (274)
396 1t6n_A Probable ATP-dependent 40.7 56 0.0019 31.9 7.5 78 329-443 82-165 (220)
397 1in4_A RUVB, holliday junction 40.5 14 0.00049 39.5 3.1 18 92-109 52-69 (334)
398 3umf_A Adenylate kinase; rossm 40.5 16 0.00054 36.5 3.2 23 89-111 27-49 (217)
399 1g41_A Heat shock protein HSLU 40.4 12 0.00043 41.6 2.6 18 91-108 50-67 (444)
400 2ph1_A Nucleotide-binding prot 40.4 22 0.00074 36.4 4.4 32 95-126 23-54 (262)
401 3sr0_A Adenylate kinase; phosp 40.3 17 0.00059 35.9 3.4 20 93-112 2-21 (206)
402 2jaq_A Deoxyguanosine kinase; 40.2 12 0.00039 36.4 2.2 18 93-110 2-19 (205)
403 2p5t_B PEZT; postsegregational 40.2 8.9 0.0003 39.2 1.3 18 92-109 33-50 (253)
404 3v9p_A DTMP kinase, thymidylat 39.8 22 0.00076 35.7 4.2 38 88-125 22-63 (227)
405 1f2t_A RAD50 ABC-ATPase; DNA d 39.7 13 0.00045 34.5 2.4 16 93-108 25-40 (149)
406 1e4v_A Adenylate kinase; trans 39.6 17 0.00058 35.9 3.3 19 93-111 2-20 (214)
407 4f4c_A Multidrug resistance pr 39.5 15 0.00053 47.2 3.7 20 89-108 1103-1122(1321)
408 2if2_A Dephospho-COA kinase; a 39.4 12 0.00041 36.5 2.1 18 93-110 3-20 (204)
409 1jjv_A Dephospho-COA kinase; P 39.3 12 0.00042 36.5 2.2 17 93-109 4-20 (206)
410 2ck3_A ATP synthase subunit al 39.2 29 0.001 39.2 5.4 35 82-116 150-187 (510)
411 4tmk_A Protein (thymidylate ki 39.2 30 0.001 34.2 5.1 40 90-129 2-43 (213)
412 4eaq_A DTMP kinase, thymidylat 39.0 23 0.00077 35.6 4.2 35 90-125 25-59 (229)
413 3q9l_A Septum site-determining 38.9 24 0.00081 35.7 4.4 31 95-125 7-37 (260)
414 3f9v_A Minichromosome maintena 38.8 12 0.00039 43.8 2.2 16 93-108 329-344 (595)
415 1tf7_A KAIC; homohexamer, hexa 38.8 22 0.00074 40.8 4.4 39 89-127 37-76 (525)
416 1uf9_A TT1252 protein; P-loop, 38.7 14 0.00047 35.9 2.4 19 92-110 9-27 (203)
417 2bbw_A Adenylate kinase 4, AK4 38.5 14 0.00048 37.4 2.5 20 90-109 26-45 (246)
418 3tif_A Uncharacterized ABC tra 38.5 14 0.00049 37.3 2.5 19 89-107 29-47 (235)
419 3t0q_A AGR253WP; kinesin, alph 38.4 17 0.0006 39.1 3.3 22 87-108 80-103 (349)
420 1yrb_A ATP(GTP)binding protein 38.4 25 0.00084 35.7 4.4 33 93-126 16-48 (262)
421 3lv8_A DTMP kinase, thymidylat 38.2 32 0.0011 34.7 5.1 32 90-121 26-57 (236)
422 4etp_A Kinesin-like protein KA 38.0 18 0.00061 39.9 3.4 24 85-108 133-158 (403)
423 1hv8_A Putative ATP-dependent 38.0 49 0.0017 35.1 7.0 66 117-188 236-312 (367)
424 2r9v_A ATP synthase subunit al 37.9 22 0.00075 40.2 4.1 34 82-115 163-199 (515)
425 3pxi_A Negative regulator of g 37.8 23 0.00079 42.6 4.7 21 90-110 200-220 (758)
426 1f9v_A Kinesin-like protein KA 37.8 18 0.00063 38.9 3.4 20 89-108 81-102 (347)
427 3kta_A Chromosome segregation 37.6 17 0.0006 34.5 3.0 16 93-108 28-43 (182)
428 3qf4_A ABC transporter, ATP-bi 37.4 20 0.00068 41.7 3.9 20 89-108 367-386 (587)
429 3tqc_A Pantothenate kinase; bi 37.3 45 0.0015 35.4 6.3 16 93-108 94-109 (321)
430 1sq5_A Pantothenate kinase; P- 37.2 24 0.00083 37.1 4.3 20 90-109 79-98 (308)
431 2y65_A Kinesin, kinesin heavy 36.7 18 0.00061 39.2 3.1 32 77-108 61-102 (365)
432 3hug_A RNA polymerase sigma fa 36.6 50 0.0017 27.5 5.4 47 851-897 38-85 (92)
433 3fe2_A Probable ATP-dependent 36.6 1.6E+02 0.0054 29.2 10.2 76 328-442 101-182 (242)
434 4f4c_A Multidrug resistance pr 36.5 23 0.0008 45.5 4.6 20 89-108 442-461 (1321)
435 3iqw_A Tail-anchored protein t 36.5 27 0.00092 37.4 4.5 36 92-127 17-52 (334)
436 1xsv_A Hypothetical UPF0122 pr 36.4 1.2E+02 0.0043 26.3 8.2 67 851-920 26-93 (113)
437 1htw_A HI0065; nucleotide-bind 36.3 22 0.00075 33.4 3.3 20 89-108 31-50 (158)
438 3auy_A DNA double-strand break 36.3 14 0.00048 40.2 2.3 21 93-114 27-47 (371)
439 4akg_A Glutathione S-transfera 36.3 18 0.0006 49.7 3.5 22 88-109 1264-1285(2695)
440 3kjh_A CO dehydrogenase/acetyl 36.2 20 0.0007 35.9 3.4 32 94-125 3-34 (254)
441 3vkg_A Dynein heavy chain, cyt 36.1 32 0.0011 47.8 5.9 63 71-134 882-951 (3245)
442 1vht_A Dephospho-COA kinase; s 35.5 14 0.00047 36.6 1.8 19 92-110 5-23 (218)
443 1xti_A Probable ATP-dependent 35.5 55 0.0019 35.2 7.0 67 118-190 249-326 (391)
444 2jeo_A Uridine-cytidine kinase 35.5 14 0.00047 37.5 1.8 21 89-109 23-43 (245)
445 2cbz_A Multidrug resistance-as 35.3 17 0.00058 36.8 2.5 20 89-108 29-48 (237)
446 3pey_A ATP-dependent RNA helic 35.3 78 0.0027 33.8 8.2 68 118-191 242-320 (395)
447 1wp9_A ATP-dependent RNA helic 35.2 97 0.0033 34.0 9.2 84 100-189 340-444 (494)
448 2xb4_A Adenylate kinase; ATP-b 35.2 22 0.00076 35.3 3.4 19 93-111 2-20 (223)
449 2woj_A ATPase GET3; tail-ancho 34.9 30 0.001 37.3 4.6 36 93-128 20-57 (354)
450 3oaa_A ATP synthase subunit al 34.8 27 0.00094 39.3 4.2 34 82-115 150-186 (513)
451 3qxc_A Dethiobiotin synthetase 34.7 38 0.0013 34.3 5.0 36 92-127 22-58 (242)
452 1ye8_A Protein THEP1, hypothet 34.7 21 0.00073 34.2 3.0 16 93-108 2-17 (178)
453 2grj_A Dephospho-COA kinase; T 34.6 18 0.00063 35.2 2.6 19 93-111 14-32 (192)
454 3nwn_A Kinesin-like protein KI 34.5 24 0.00083 38.1 3.7 21 88-108 100-122 (359)
455 3cwq_A Para family chromosome 34.4 35 0.0012 33.5 4.7 36 95-131 5-42 (209)
456 2oca_A DAR protein, ATP-depend 34.2 96 0.0033 34.8 9.0 72 116-192 344-426 (510)
457 2f1r_A Molybdopterin-guanine d 34.2 12 0.00042 35.7 1.2 19 93-111 4-22 (171)
458 1ry6_A Internal kinesin; kines 34.2 20 0.0007 38.7 3.0 19 90-108 82-102 (360)
459 1bg2_A Kinesin; motor protein, 34.0 26 0.00089 37.3 3.8 21 88-108 73-95 (325)
460 1odf_A YGR205W, hypothetical 3 33.9 16 0.00054 38.3 2.0 17 93-109 33-49 (290)
461 2qe7_A ATP synthase subunit al 33.8 23 0.0008 39.9 3.5 34 82-115 150-186 (502)
462 1sgw_A Putative ABC transporte 33.4 20 0.00068 35.7 2.6 20 89-108 33-52 (214)
463 3gfo_A Cobalt import ATP-bindi 33.3 19 0.00063 37.5 2.5 20 89-108 32-51 (275)
464 2ff7_A Alpha-hemolysin translo 33.3 19 0.00066 36.6 2.5 20 89-108 33-52 (247)
465 1deb_A APC protein, adenomatou 33.3 99 0.0034 22.5 5.3 39 712-750 11-51 (54)
466 2rep_A Kinesin-like protein KI 33.1 22 0.00075 38.7 3.1 32 77-108 93-133 (376)
467 2ghi_A Transport protein; mult 33.1 19 0.00066 36.9 2.5 20 89-108 44-63 (260)
468 1r6b_X CLPA protein; AAA+, N-t 33.0 49 0.0017 39.7 6.5 17 93-109 490-506 (758)
469 3i5x_A ATP-dependent RNA helic 33.0 1.3E+02 0.0046 34.1 10.1 68 117-190 337-418 (563)
470 3hjn_A DTMP kinase, thymidylat 33.0 41 0.0014 32.7 4.9 41 94-134 3-44 (197)
471 3end_A Light-independent proto 33.0 35 0.0012 35.6 4.7 36 90-125 40-75 (307)
472 3bfn_A Kinesin-like protein KI 32.9 22 0.00074 38.9 2.9 32 77-108 75-116 (388)
473 2pze_A Cystic fibrosis transme 32.9 20 0.00067 36.0 2.5 20 89-108 32-51 (229)
474 1cp2_A CP2, nitrogenase iron p 32.8 37 0.0013 34.6 4.7 32 94-125 4-35 (269)
475 3ber_A Probable ATP-dependent 32.8 1.4E+02 0.0048 29.8 9.1 75 329-442 111-192 (249)
476 3ea0_A ATPase, para family; al 32.7 36 0.0012 34.0 4.6 31 95-125 9-40 (245)
477 3cio_A ETK, tyrosine-protein k 32.7 37 0.0013 35.5 4.8 34 92-125 105-139 (299)
478 3bfv_A CAPA1, CAPB2, membrane 32.7 34 0.0012 35.2 4.4 34 92-125 83-117 (271)
479 2afh_E Nitrogenase iron protei 32.7 37 0.0013 35.1 4.7 32 94-125 5-36 (289)
480 2p67_A LAO/AO transport system 32.1 35 0.0012 36.5 4.5 36 90-125 55-90 (341)
481 3aez_A Pantothenate kinase; tr 32.1 17 0.00059 38.5 2.0 20 90-109 89-108 (312)
482 1s2m_A Putative ATP-dependent 32.1 68 0.0023 34.6 7.0 65 118-188 257-332 (400)
483 1uj2_A Uridine-cytidine kinase 32.0 21 0.00071 36.3 2.6 17 93-109 24-40 (252)
484 3dc4_A Kinesin-like protein NO 31.9 27 0.00091 37.5 3.5 32 77-108 71-112 (344)
485 3io3_A DEHA2D07832P; chaperone 31.8 38 0.0013 36.4 4.7 37 92-128 19-57 (348)
486 1v8k_A Kinesin-like protein KI 31.7 31 0.001 38.0 3.9 32 77-108 131-172 (410)
487 1a7j_A Phosphoribulokinase; tr 31.6 24 0.00084 36.8 3.1 18 92-109 6-23 (290)
488 3nh6_A ATP-binding cassette SU 31.6 15 0.00052 38.8 1.4 20 89-108 78-97 (306)
489 1ltq_A Polynucleotide kinase; 31.6 19 0.00064 37.7 2.2 18 93-110 4-21 (301)
490 2h58_A Kinesin-like protein KI 31.5 30 0.001 36.9 3.8 25 84-108 72-98 (330)
491 1goj_A Kinesin, kinesin heavy 31.4 29 0.00099 37.4 3.7 32 77-108 57-98 (355)
492 1q3t_A Cytidylate kinase; nucl 31.4 27 0.00091 35.0 3.3 22 89-110 14-35 (236)
493 2vvg_A Kinesin-2; motor protei 31.3 30 0.001 37.2 3.8 32 77-108 66-107 (350)
494 4g1u_C Hemin import ATP-bindin 31.3 21 0.00073 36.8 2.5 20 89-108 35-54 (266)
495 2pcj_A ABC transporter, lipopr 31.3 21 0.00072 35.7 2.4 19 89-107 28-46 (224)
496 3ake_A Cytidylate kinase; CMP 31.2 20 0.00068 34.8 2.2 18 93-110 4-21 (208)
497 4a14_A Kinesin, kinesin-like p 31.2 31 0.001 37.1 3.8 32 77-108 60-101 (344)
498 1mv5_A LMRA, multidrug resista 31.1 19 0.00064 36.6 2.0 20 89-108 26-45 (243)
499 1g6h_A High-affinity branched- 31.0 22 0.00075 36.4 2.5 19 89-107 31-49 (257)
500 1ji0_A ABC transporter; ATP bi 31.0 22 0.00076 35.9 2.5 20 89-108 30-49 (240)
No 1
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-143 Score=1343.55 Aligned_cols=890 Identities=50% Similarity=0.880 Sum_probs=801.3
Q ss_pred ccccCCccceeeecCCCC--CCCChhhhccccCCCCCchhhhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHH
Q 002357 31 QRNLTRSCVHEVAVPSGY--ALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 31 ~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~ 108 (931)
......+|.|.+++|+++ .++.+ ...+.....|+|+|+|+|.+|++.+.+|++++|+||||||||++|
T Consensus 49 ~~~~~~~~~h~~~~p~~~~~~~~~~----------~~~p~~~~~~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva 118 (1010)
T 2xgj_A 49 KVRLSHQVRHQVALPPNYDYTPIAE----------HKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVA 118 (1010)
T ss_dssp EEEEEEEEEEEEECCTTCCCCCGGG----------CCCSSCSCCCSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHH
T ss_pred ccccccCceeeecCCCCcccCCCCc----------ccChhhHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHH
Confidence 344467899999999995 33322 111223778999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEE
Q 002357 109 EYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIF 188 (931)
Q Consensus 109 ~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vVi 188 (931)
++++...+.++.++||++|+++|++|++++|.+.++++|+++|+.+.+++++|+|||||+|.++++++...++++++|||
T Consensus 119 ~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVVi 198 (1010)
T 2xgj_A 119 EYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIF 198 (1010)
T ss_dssp HHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEE
T ss_pred HHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred eccccCCCCCchHHHHHHHHhcCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEe
Q 002357 189 DEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLV 268 (931)
Q Consensus 189 DEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~ 268 (931)
||||++.+++||..|+.++..++.++|+++||||++|..++++|++...+.++.++..+.+|+|+++++++.+...++.+
T Consensus 199 DEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~ 278 (1010)
T 2xgj_A 199 DEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLV 278 (1010)
T ss_dssp ETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEE
T ss_pred echhhhcccchhHHHHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeee
Confidence 99999999999999999999999999999999999999999999999888899999999999999999998777788888
Q ss_pred eCccchhchhhHHHHHHHHHhhhcCCCcC--CCCCCCCccCCCCCC--CCCCHHHHHHHHHHcCCCcEEEEecCHHHHHH
Q 002357 269 VDEKEQFREDNFVKLQDTFLKQKIGGRRE--NGKASGRMAKGGSGS--GGSDIFKIVKMIMERKFQPVIVFSFSRRECEQ 344 (931)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~ 344 (931)
++..+.+...++.+.+..+.......+.. ..+......+++... ....+..++..+...+..++||||+|++.|+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~ 358 (1010)
T 2xgj_A 279 VDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEE 358 (1010)
T ss_dssp ECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHH
T ss_pred eccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHH
Confidence 88888888777777654443211100000 000000000000000 14456778888887777899999999999999
Q ss_pred HHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEe
Q 002357 345 HAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFA 424 (931)
Q Consensus 345 la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLva 424 (931)
++..|...++....+...+..++.+.+..++..|+.++++..+.+++.+||++|||||++.+|+.+++.|++|.++||||
T Consensus 359 la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVA 438 (1010)
T 2xgj_A 359 LALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFA 438 (1010)
T ss_dssp HHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhhcc------
Q 002357 425 TETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLEG------ 498 (931)
Q Consensus 425 T~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~~~------ 498 (931)
|+++++|||+|++++||+...+||+..++|.++.+|+||+|||||.|.+..|.||+++++..+...+.+++.+.
T Consensus 439 T~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s 518 (1010)
T 2xgj_A 439 TETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDS 518 (1010)
T ss_dssp EGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCC
T ss_pred ehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCCCccccc
Confidence 99999999999999999888889999999999999999999999999988999999999877777888877665
Q ss_pred ----------------CCChHHHHHhhHHHHHhhccchhHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHH
Q 002357 499 ----------------QFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLM 562 (931)
Q Consensus 499 ----------------~~~~e~~l~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 562 (931)
+++++++++++|.+|+.....+.++.++.+++.++..+....+.++.+|+.++.++...++.++
T Consensus 519 ~f~~~~~~ilnll~~~~~~~e~ll~rsf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 598 (1010)
T 2xgj_A 519 AFHLGYNMILNLMRVEGISPEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVR 598 (1010)
T ss_dssp CCCCCHHHHHHHHHSSSCCHHHHHHHCHHHHHHHHHHHHHHHHC-CHHHHHHSSCCCSCTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCChhhHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999988888999999999999999999999
Q ss_pred HHhcChhhHHhcccCCceEEEec-CCccceeEEEEEeecCC-CCc------------ceec-------------------
Q 002357 563 SEITRPERVLYYLGSGRLIKVRE-GGTDWGWGVVVNVVKKP-SAG------------VGTL------------------- 609 (931)
Q Consensus 563 ~~~~~~~~~~~~l~~g~~i~~~~-~~~~~~~~~~~~~~~~~-~~~------------~~~~------------------- 609 (931)
.+..++.+.+.||++||+|.++. ++..++||||+++.+.. ++. ++++
T Consensus 599 ~~~~~~~~~~~~l~~Gr~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 678 (1010)
T 2xgj_A 599 QVVTHPANALSFLQPGRLVEISVNGKDNYGWGAVVDFAKRINKRNPSAVYTDHESYIVNVVVNTMYIDSPVNLLKPFNPT 678 (1010)
T ss_dssp HHHTSHHHHGGGCCTTEEEEEEETTTEEEEEEEEEEEEECCCSSCTTCCCCTTTTEEEEEEEEEEETTSCGGGCCTTCCC
T ss_pred HHHhccHHHHhhcCCCcEEEEEcCCCCcceeEEEEecccccCCCccccccccCCceeEEEEeeccccccccccccccccc
Confidence 99999999999999999999998 56679999999975331 100 2211
Q ss_pred ------C----CCCCeEEEeecCCccceeeeeeeecCCCCCChhHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCChHH
Q 002357 610 ------P----SRGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEV 679 (931)
Q Consensus 610 ------~----~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (931)
| .++.+.++++++++|..|+.+++.+|+++++...|+.+.+.+.++.+++++++|.+||+++|++++.++
T Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (1010)
T 2xgj_A 679 LPEGIRPAEEGEKSICAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDF 758 (1010)
T ss_dssp CCTTCCBCCTTCCEEEEEEEECGGGEEEEEEEECCCCSSTTCSSSHHHHHHHHHHHHHHSSSCCCBCCTTTTSCCCCHHH
T ss_pred cccccCCCCCCcCCceEEEEechhhcceeeeeeEecccccCChHHHHHHHHHHHHHHHhcccCCcccCchhhhccccHHH
Confidence 1 355688899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhcCCccCCCcc
Q 002357 680 VDLVNQIEELEHKLFAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVV 758 (931)
Q Consensus 680 ~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~e~~~~~~vL~~lgyid~~~~v 758 (931)
.+...+++.+++++.+||||.| ++++|+++++++.+++++++++++++++.+++.+++||++|++||++|||||++++|
T Consensus 759 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~~v 838 (1010)
T 2xgj_A 759 LKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDII 838 (1010)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHSSSHHHHHHHHHHC-CHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSBCTTCCB
T ss_pred HHHHHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCcCCCCcc
Confidence 9999999999999999999999 999999999999999999999999999988898999999999999999999988999
Q ss_pred chhhhhhhcccCCchhHHHHHHhhCCCCCCCHHHHHHHhhccccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002357 759 QLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECK 838 (931)
Q Consensus 759 t~kGrvA~ei~s~~eLlltEll~~g~f~~l~p~eiaAllS~~v~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~ 838 (931)
|+||||||||+++||||+|||||+|+|++|+|+||||+|||||||++.++.|.++++|.+++.++++++++|+++|.+|+
T Consensus 839 ~~kGr~a~~i~~~~el~~~e~~~~g~~~~l~p~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 918 (1010)
T 2xgj_A 839 ELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSK 918 (1010)
T ss_dssp CHHHHHHHTCCSSCHHHHHHHHHHTTTTTCCHHHHHHHHHHHHCCCCCSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHhcCccHHHHHHHHHcCccCCCCHHHHHHHHeeeEeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999888889999999999999999999999999999
Q ss_pred CCCChhhhhhccCCccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHh
Q 002357 839 LEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASES 918 (931)
Q Consensus 839 ~~~~~~~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ell~qi~~aa~~iG~~~L~~k~~~a~~~ 918 (931)
+++++++|+++ |+|+||+|||+||+|+||++||++|+++|||||||||||+||||||++||++|||++|++||++|+++
T Consensus 919 ~~~~~~~~~~~-~~~~l~~~v~~Wa~g~~~~~i~~~t~~~eG~~vR~~~rl~ell~q~~~a~~~~g~~~l~~~~~~a~~~ 997 (1010)
T 2xgj_A 919 IEVVEKDYVES-FRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLKL 997 (1010)
T ss_dssp CCCCHHHHHHT-SCCTTHHHHHHHTTTCCHHHHTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCChhHhccc-CChHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHh
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcccccCCCC
Q 002357 919 LRRGIMFSNSLYL 931 (931)
Q Consensus 919 i~RdiVf~~sLYl 931 (931)
|||||||++||||
T Consensus 998 i~R~iv~~~sly~ 1010 (1010)
T 2xgj_A 998 IHRDIVSAGSLYL 1010 (1010)
T ss_dssp HSCGGGGCCCC-C
T ss_pred ccCCeEecccccC
Confidence 9999999999997
No 2
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-146 Score=1378.56 Aligned_cols=886 Identities=50% Similarity=0.877 Sum_probs=765.8
Q ss_pred ccceeeecCCCCCCCChhhhccccCCCCCchhhhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHH
Q 002357 37 SCVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF 116 (931)
Q Consensus 37 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l 116 (931)
.+.+..++|+.|..... .+.....+...++|+|+|+|.+|++.+.+|++++|+||||||||++|++|++..+
T Consensus 153 ~~~~~~~~~~~~~~~~l--------~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l 224 (1108)
T 3l9o_A 153 QVRHQVALPPNYDYTPI--------AEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL 224 (1108)
T ss_dssp EEEEEECCSSCCCSSTT--------TTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCcccCCC--------ChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHH
Confidence 44555666666543332 1224445677899999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCC
Q 002357 117 RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 117 ~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~ 196 (931)
.++.+++|++||++|++|++++|.+.++++|+++|+.+.+++++|+|||||+|.++++++...++++++|||||||++.+
T Consensus 225 ~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 225 KNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp HTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTS
T ss_pred hcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred CCchHHHHHHHHhcCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhc
Q 002357 197 RERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFR 276 (931)
Q Consensus 197 ~~~g~~~~~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~ 276 (931)
++|+..|+.++..+++++|+++||||++|..++++|++.....++.++..+.+|+|+++++++.....++.+++..+.+.
T Consensus 305 ~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~ 384 (1108)
T 3l9o_A 305 KERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFR 384 (1108)
T ss_dssp HHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEEC
T ss_pred cchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999888888898898888888
Q ss_pred hhhHHHHHHHHHhhhcCCCcC--CCCCCCCccCCCC--CCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccC
Q 002357 277 EDNFVKLQDTFLKQKIGGRRE--NGKASGRMAKGGS--GSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKL 352 (931)
Q Consensus 277 ~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~ 352 (931)
..++...+..+.......... ..+.......++. ......+..++..+...+..++||||++++.|+.++..|...
T Consensus 385 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~ 464 (1108)
T 3l9o_A 385 EENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKL 464 (1108)
T ss_dssp HHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSH
T ss_pred hhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhc
Confidence 877777665443322111100 0000000001110 011345667777777778889999999999999999999888
Q ss_pred CCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhccc
Q 002357 353 DFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGL 432 (931)
Q Consensus 353 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GI 432 (931)
++.+..+...+..++.+++..+...++.+|++..+.+.+.+||++|||+|++.+|+.+++.|++|.++|||||+++++||
T Consensus 465 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GI 544 (1108)
T 3l9o_A 465 DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGL 544 (1108)
T ss_dssp HHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCC
T ss_pred cCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCC
Confidence 88888888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhhcc--------------
Q 002357 433 NMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLEG-------------- 498 (931)
Q Consensus 433 dip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~~~-------------- 498 (931)
|+|++++||++..+||+..++|+++.+|+||+|||||.|.++.|+||+++++..+...+++++.+.
T Consensus 545 DiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~~ 624 (1108)
T 3l9o_A 545 NMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNM 624 (1108)
T ss_dssp CC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_pred CCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccccccCCcHHH
Confidence 999999999999999999999999999999999999999999999999999888888888888776
Q ss_pred --------CCChHHHHHhhHHHHHhhccchhHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhcChhh
Q 002357 499 --------QFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLMSEITRPER 570 (931)
Q Consensus 499 --------~~~~e~~l~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 570 (931)
+..+++|+++||.+|+....++.+++++.++++++..+..+.+.++.+|+.++.++....+.++.+..++.+
T Consensus 625 ilnll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 704 (1108)
T 3l9o_A 625 ILNLMRVEGISPEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTHPAN 704 (1108)
T ss_dssp HHHHHHSTTCCHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 567899999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred HHhcccCCceEEEecC-CccceeEEEEEeecCCC--------Cc-----ceecC--------------------------
Q 002357 571 VLYYLGSGRLIKVREG-GTDWGWGVVVNVVKKPS--------AG-----VGTLP-------------------------- 610 (931)
Q Consensus 571 ~~~~l~~g~~i~~~~~-~~~~~~~~~~~~~~~~~--------~~-----~~~~~-------------------------- 610 (931)
+++||++||+|.++.+ +.+||||||+++.+..+ +. ++|+.
T Consensus 705 ~~~~l~~G~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (1108)
T 3l9o_A 705 ALSFLQPGRLVEISVNGKDNYGWGAVVDFAKRINKRNPSAVYTDHESYIVNVVVNTMYIDSPVNLLKPFNPTLPEGIRPA 784 (1108)
T ss_dssp HHHHCCTTEEEEECCTTCCEEEEEEEEEECCCC-----CCSSSSEEEEEECCCSTTCCSCCCSSCTTTTCCSGGGSSCCS
T ss_pred HHhhCCCCCEEEEecCCCcccceEEEEecccccccccccccCCCCCceeEEEEeccccccccccccccccccCCccccCC
Confidence 9999999999999987 67899999999864321 11 33331
Q ss_pred ---CCCCeEEEeecCCccceeeeeeeecCCCCCChhHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCChHHHHHHHHHH
Q 002357 611 ---SRGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIE 687 (931)
Q Consensus 611 ---~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (931)
..+.+.++++++++|..|+++++.+|+++++...|+.+.+.+.++.++++.++|.++|+++|++.+.++.++..+++
T Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1108)
T 3l9o_A 785 EEGEKSICAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKID 864 (1108)
T ss_dssp CC---CCCCCCCEESSCEEEEEEEECCCCTTTTSHHHHHHHHHHHHHHHHHCSSCCTTHHHHHHHCCCCHHHHHHHHHHH
T ss_pred CcccCCceEEEEechhheeeccceEEecCCCcCCHHHHHHHHHHHHHHHHhcCCCCcccChhhhcccCCHHHHHHHHHHH
Confidence 12345678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhcCCccCCCccchhhhhhh
Q 002357 688 ELEHKLFAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAAC 766 (931)
Q Consensus 688 ~l~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~e~~~~~~vL~~lgyid~~~~vt~kGrvA~ 766 (931)
.+++++.+||||.| ++++|+++++++.+|++++++|++++++.+++.+++||++|++||++|||||++++||+||||||
T Consensus 865 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kgr~a~ 944 (1108)
T 3l9o_A 865 VLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVAC 944 (1108)
T ss_dssp HHHHHHHHSSCTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHTSCTTTCCCSHHHHHHH
T ss_pred HHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCcCCCCcCcHHhHHHH
Confidence 99999999999999 99999999999999999999999999998899999999999999999999999999999999999
Q ss_pred cccCCchhHHHHHHhhCCCCCCCHHHHHHHhhccccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhh
Q 002357 767 LIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEY 846 (931)
Q Consensus 767 ei~s~~eLlltEll~~g~f~~l~p~eiaAllS~~v~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 846 (931)
||+|+||||+|||||+|+|++|+|+||||||||||||+|+++.|.++++|.+++.+++++|++|++++.+|++++++++|
T Consensus 945 ~i~~~~el~~~e~~~~~~~~~l~~~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 1024 (1108)
T 3l9o_A 945 EISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDY 1024 (1108)
T ss_dssp C-CCTTHHHHHHHHHHHCCCSSCCTHHHHHTCC------------------CHHHHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HhcCccHHHHHHHHHhCcccCCCHHHHHHHHhheeeecccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHh
Confidence 99999999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred hhccCCccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhhcCCcccc
Q 002357 847 VESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFS 926 (931)
Q Consensus 847 ~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ell~qi~~aa~~iG~~~L~~k~~~a~~~i~RdiVf~ 926 (931)
+++ |+|+||+|||+||+|+||++||++|+++|||||||||||+||||||++||++|||++|++||++|+++|||||||+
T Consensus 1025 ~~~-~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~l~q~~~aa~~~g~~~l~~k~~~a~~~i~r~iv~~ 1103 (1108)
T 3l9o_A 1025 VES-FRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSA 1103 (1108)
T ss_dssp HHH-HCCSCHHHHHHHHC----CCGGGTC--CHHHHHHHHHHHHHHHSCCCC----CCCHHHHHHHHHHHHHHHHHTCCC
T ss_pred ccC-CChHHHHHHHHHhCCCCHHHHHhcCCCCchhhhhHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCEEee
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 002357 927 NSLYL 931 (931)
Q Consensus 927 ~sLYl 931 (931)
+||||
T Consensus 1104 ~slyl 1108 (1108)
T 3l9o_A 1104 GSLYL 1108 (1108)
T ss_dssp CCCC-
T ss_pred ccccC
Confidence 99997
No 3
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.1e-137 Score=1288.08 Aligned_cols=858 Identities=35% Similarity=0.598 Sum_probs=733.6
Q ss_pred CchhhhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC
Q 002357 65 YNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK 144 (931)
Q Consensus 65 ~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~ 144 (931)
+.+.+...|+|+|+++|.++++.+.+|++++|+||||||||++|++++...+..+.++||++|+++|++|+++++.+.++
T Consensus 28 l~~~~~~~~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~ 107 (997)
T 4a4z_A 28 LIPNPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFD 107 (997)
T ss_dssp HCSSCSCCCSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC-
T ss_pred hhHhHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcC
Confidence 45567788999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred --CeEEEecccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccC
Q 002357 145 --DVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSAT 222 (931)
Q Consensus 145 --~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT 222 (931)
.++.++|+.+.+++++|+|+||++|.++++++...+.++++|||||||++.+++|+.+|++++..+++++|+|+||||
T Consensus 108 ~~~v~~l~G~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT 187 (997)
T 4a4z_A 108 DVNIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSAT 187 (997)
T ss_dssp -CCEEEECSSCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECC
T ss_pred CCeEEEEeCCCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEcCC
Confidence 899999999999999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCc------
Q 002357 223 MSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRR------ 296 (931)
Q Consensus 223 ~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 296 (931)
++|..+|++|++.....++.++.+..+|+|+.++++. ...++.+++....+...++......+.........
T Consensus 188 ~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 265 (997)
T 4a4z_A 188 VPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWA--KKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNG 265 (997)
T ss_dssp CTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEE--TTEEEEEECTTCCBCHHHHHHHHHHHC--------------
T ss_pred CCChHHHHHHHhcccCCceEEEecCCCCccceEEEec--CCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccc
Confidence 9999999999999988899999999999999988876 34577777877788777777666554322111000
Q ss_pred -------C------CCCC--------CCCccCC-----------------CCCCCCCCHHHHHHHHHHcCCCcEEEEecC
Q 002357 297 -------E------NGKA--------SGRMAKG-----------------GSGSGGSDIFKIVKMIMERKFQPVIVFSFS 338 (931)
Q Consensus 297 -------~------~~~~--------~~~~~~~-----------------~~~~~~~~~~~ll~~l~~~~~~~~IVF~~s 338 (931)
. .++. .+...++ ........+..++..+...+..++||||+|
T Consensus 266 ~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~s 345 (997)
T 4a4z_A 266 RGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFS 345 (997)
T ss_dssp ---------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECC
Confidence 0 0000 0000000 001123457788888888888999999999
Q ss_pred HHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCC
Q 002357 339 RRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGL 418 (931)
Q Consensus 339 r~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~ 418 (931)
++.|+.++..|...++.+..+...+..++.+.+..++.+|+.+|++..+.+++.+||++|||+|++.+|+.+++.|++|.
T Consensus 346 r~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~ 425 (997)
T 4a4z_A 346 KKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGF 425 (997)
T ss_dssp HHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeC-CccCHHHHHhhhhc
Q 002357 419 VKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVD-EQMEMNTLKDMVLE 497 (931)
Q Consensus 419 i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~-~~~~~~~l~~l~~~ 497 (931)
++|||||+++++|||+|++++|+.+..+||+..++|+++.+|+||+|||||+|.++.|.||+++. +..+...+++++.+
T Consensus 426 ~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i~~ 505 (997)
T 4a4z_A 426 IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMG 505 (997)
T ss_dssp CSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHHHS
T ss_pred CcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999994 45567777777665
Q ss_pred c----------------------CCChHHHHHhhHHHHHhhccchhHHHHHHHHHHHHhhcccCCh----hhHHHHHHHH
Q 002357 498 G----------------------QFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGE----AEVAEYHKLK 551 (931)
Q Consensus 498 ~----------------------~~~~e~~l~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~----~~~~~y~~~~ 551 (931)
. ...+++|+++||.+++.....+...+.+..+++++..+....+ .++..|+.++
T Consensus 506 ~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~c~~c~~~~~~~~~~r 585 (997)
T 4a4z_A 506 VPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIKVLQEELQTIEYKSCEICDNDIEKFLELM 585 (997)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CHHHHH
T ss_pred CCcccccccccchHHHHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHH
Confidence 5 3446899999999999999999999999999998877654332 5789999999
Q ss_pred HHHHHHHHHHHHHhcChhhHHhcccCCceEEEecCCccceeEEEEEeecCCC-CcceecC--------------------
Q 002357 552 LDIAQLEKKLMSEITRPERVLYYLGSGRLIKVREGGTDWGWGVVVNVVKKPS-AGVGTLP-------------------- 610 (931)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------------- 610 (931)
.++..+++.+.........++++|++||+|.++++..+++||||+++...++ +.+.|+.
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~l~~gr~v~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 665 (997)
T 4a4z_A 586 LAYKEATVNLMQEMVKSPSILHILKEGRLVAFRDPNDCLKLGFVFKVSLKDAVCVIMTFTKPYKLPNGEPNHLIYFPKAD 665 (997)
T ss_dssp HHHHHHHHHHHHHHTTSTTHHHHTCTTEEEEEECTTCCEEEEEEEEEETTTTEEEEEC-CCCCC----------CCTTCH
T ss_pred HHHHHHHHHHHHHHhcCHhHHhhCCCCCEEEEecCCCCeeEEEEEeeccCCCCCceEEEeccccccccCccccCCCcccc
Confidence 9999998887665556667999999999999998877789999999875432 1222221
Q ss_pred ----------CCCCeEEEeecCCccceeeeeeeecC-CCCC--ChhHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCCh
Q 002357 611 ----------SRGGGYIVPVQLPLISTLSKIRLSVP-PDLR--PLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDP 677 (931)
Q Consensus 611 ----------~~~~~~~~~~~~~~i~~i~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (931)
..+.+.++++|+++|..|+++++.+| +++. ....++.+.+.+.++... |.++|+++|++++.
T Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 740 (997)
T 4a4z_A 666 GYRRRNFPKFQKTDFYMEEVPVTAIEVITKRKFAAPLGKVIKKDVAALNEFNAETNNILDG-----KTLKEAINIEKQGL 740 (997)
T ss_dssp HHHHHHCCCCCCCCCCEEEEECC-CCEEEEEECC-CHHHHHHTCHHHHHHHHHHHHHHHHS-----CCCCCC------CC
T ss_pred cccccccCcccCCceEEEEeccchhhhhhcccccCChHhhhcCCHHHHHHHHHHHHHHhcc-----CCCCchhhcccccH
Confidence 34556788999999999999998887 3332 556677788787777553 77899999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhcCCccCCC
Q 002357 678 EVVDLVNQIEELEHKLFAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADG 756 (931)
Q Consensus 678 ~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~e~~~~~~vL~~lgyid~~~ 756 (931)
++.+...+++.++.++.+||||.| ++++|+.+++++.++++++++|++++++ .++.+++||++|++||++|||||+++
T Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~vL~~l~~~~~~~ 819 (997)
T 4a4z_A 741 KIHQILLDRTNIRDEIFKLKSIKCPNLSQHIVPKFKAHVIKKKIEELYHLMSD-QNLSLLPDYEKRLAVLKDTEFIDQNH 819 (997)
T ss_dssp HHHHHHHHHHHHHHC------------CCSHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHHHHHTTSBCTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHcCCcCCCC
Confidence 999999999999999999999999 9999999999999999999999999999 78889999999999999999999999
Q ss_pred ccchhhhhhhcccCCchhHHHHHHhhCCCCCCCHHHHHHHhhccccccCC--cccccccHHHHHHHHHHHHHHHHHHHHH
Q 002357 757 VVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKS--SEQINLRMELAKPLQQLQESARKIAEIQ 834 (931)
Q Consensus 757 ~vt~kGrvA~ei~s~~eLlltEll~~g~f~~l~p~eiaAllS~~v~~~~~--~~~~~~~~~l~~~~~~l~~~~~~i~~~~ 834 (931)
+||+||||||||+|+|||++|||||+|+|++|+|+||||||||||||+|. ++.|.++++|++++.+++++|.+|++++
T Consensus 820 ~v~~kgr~a~~i~~~~el~~te~~~~~~~~~l~~~~~~a~ls~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 899 (997)
T 4a4z_A 820 NVLLKGRVACEINSGYELVLTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIYKKMLCVF 899 (997)
T ss_dssp CBCHHHHHHTTCCSSCHHHHHHHHHSSGGGGCCHHHHHHHHGGGSCCCCCSSCCCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHhHHHhhhcCccHHHHHHHHHhCcccCCCHHHHHHHHhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 4457889999999999999999999999
Q ss_pred HHcCCCCC--hhhhhhccCCccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHH
Q 002357 835 NECKLEVN--VDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKF 912 (931)
Q Consensus 835 ~~~~~~~~--~~~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ell~qi~~aa~~iG~~~L~~k~ 912 (931)
.+|+++++ +++|+++ |+|+||+|||+||+|+||++||++|+++|||||||||||+||||||++||++|||++|++||
T Consensus 900 ~~~~~~~~~~~~~~~~~-~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~~~q~~~aa~~~g~~~l~~k~ 978 (997)
T 4a4z_A 900 NTHQIPLTQDEAEFLDR-KRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKTASIIIGNSTLHMKM 978 (997)
T ss_dssp HHTTCCCCHHHHHGGGS-CTTTTHHHHHHHHHTCCHHHHHHTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHcCCCCccchhhhccC-CChHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999986 4789999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcccccCCCC
Q 002357 913 AAASESLRRGIMFSNSLYL 931 (931)
Q Consensus 913 ~~a~~~i~RdiVf~~sLYl 931 (931)
++|+++|||||||++||||
T Consensus 979 ~~a~~~i~R~iv~~~slyl 997 (997)
T 4a4z_A 979 SRAQELIKRDIVFAASLYL 997 (997)
T ss_dssp HHHHHHHSCGGGGCCCTTC
T ss_pred HHHHHHhcCCeeecccccC
Confidence 9999999999999999997
No 4
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.4e-50 Score=526.21 Aligned_cols=383 Identities=26% Similarity=0.389 Sum_probs=292.0
Q ss_pred CchhhhccC-CCC-CCHHHHHHHHHH-hcCCcEEEEcCCCCCcHHHHHHHHHHHHh-----------CCCEEEEEcCchh
Q 002357 65 YNGEMAKTY-SFE-LDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMAFR-----------DKQRVIYTSPLKA 130 (931)
Q Consensus 65 ~~~~~~~~~-~f~-l~~~Q~~ai~~l-~~g~~vlv~apTGsGKTl~~~l~i~~~l~-----------~~~rvl~l~P~ka 130 (931)
++......| +|+ |+++|.++++.+ ..++|++|+||||||||++|+++|+..+. .+.++||++|+||
T Consensus 66 Lp~~~~~~f~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kA 145 (1724)
T 4f92_B 66 LPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRS 145 (1724)
T ss_dssp SCGGGSTTCTTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHH
T ss_pred cCHHHHHhcCCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHH
Confidence 334444455 587 999999999976 67899999999999999999999999884 3679999999999
Q ss_pred hHHHHHHHHHHhcC----CeEEEecccccCC----CCCeeEecHHHHHHHHhcCc--cccCcccEEEEeccccCCCCCch
Q 002357 131 LSNQKYRELHQEFK----DVGLMTGDVTLSP----NASCLVMTTEILRGMLYRGS--EVLKEVAWVIFDEIHYMKDRERG 200 (931)
Q Consensus 131 L~~Q~~~~l~~~~~----~vg~~tGd~~~~~----~~~IlV~Tpe~L~~~l~~~~--~~l~~l~~vViDEaH~l~~~~~g 200 (931)
|++|++++|.+.++ .|+.+|||.+.++ +++|+|||||++..++.+.. ..++++++||+||+|++.| +||
T Consensus 146 La~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG 224 (1724)
T 4f92_B 146 LVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRG 224 (1724)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccH
Confidence 99999999998876 6888999998765 58999999999988887653 3578999999999999987 699
Q ss_pred HHHHHHHHh-------cCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccc
Q 002357 201 VVWEESIIF-------LPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKE 273 (931)
Q Consensus 201 ~~~~~ii~~-------l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~ 273 (931)
.+|+.++.. +++++|+|+||||+||..++++|++......+.++.+++||+|+++.++... ...
T Consensus 225 ~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~---------~~~ 295 (1724)
T 4f92_B 225 PVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGIT---------EKK 295 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEEC---------CCC
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccC---------Ccc
Confidence 999987653 5788999999999999999999998765556778889999999987554221 111
Q ss_pred hhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHH-cCCCcEEEEecCHHHHHHHHHHhccC
Q 002357 274 QFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME-RKFQPVIVFSFSRRECEQHAMSMSKL 352 (931)
Q Consensus 274 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~~~IVF~~sr~~~~~la~~L~~~ 352 (931)
... .+. .++. .+...+.+ ....++||||+||+.|+.+|..|.+.
T Consensus 296 ~~~--~~~-~~~~--------------------------------~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~ 340 (1724)
T 4f92_B 296 AIK--RFQ-IMNE--------------------------------IVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDM 340 (1724)
T ss_dssp HHH--HHH-HHHH--------------------------------HHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHH
T ss_pred hhh--hhH-HHHH--------------------------------HHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHH
Confidence 100 000 0100 01111111 24568999999999999999988541
Q ss_pred CCCChHHHHHHHHHHH--HHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhc
Q 002357 353 DFNTQEEKDTVEQVFQ--NAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAM 430 (931)
Q Consensus 353 ~~~~~~e~~~i~~~~~--~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~ 430 (931)
....... ..+.. .........+........+.+++..||++|||||++.+|..+|+.|++|.++|||||+|+|+
T Consensus 341 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~ 416 (1724)
T 4f92_B 341 CLEKDTL----GLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAW 416 (1724)
T ss_dssp HHHTTST----TCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHH
T ss_pred Hhhccch----hhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHh
Confidence 1000000 00000 00000000112223345688899999999999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEecceecCCCCC--cccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhhc
Q 002357 431 GLNMPAKTVVFTAVKKWDGDSH--RYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLE 497 (931)
Q Consensus 431 GIdip~~~vVI~~~~~~d~~~~--~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~~ 497 (931)
|||+|+++|||.+...||+... .|+++.+|.||+|||||+|.+..|.+|+++++. +......++.+
T Consensus 417 GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~-~~~~~~~ll~~ 484 (1724)
T 4f92_B 417 GVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHG-ELQYYLSLLNQ 484 (1724)
T ss_dssp HSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEEST-TCCHHHHHTTT
T ss_pred hCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecch-hHHHHHHHHcC
Confidence 9999999999999999998643 578999999999999999999999999998765 33334444444
No 5
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.3e-50 Score=526.57 Aligned_cols=370 Identities=25% Similarity=0.384 Sum_probs=290.4
Q ss_pred CCC-CCHHHHHHHHHH-hcCCcEEEEcCCCCCcHHHHHHHHHHHHh--CCCEEEEEcCchhhHHHHHHHHHHhcC-----
Q 002357 74 SFE-LDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMAFR--DKQRVIYTSPLKALSNQKYRELHQEFK----- 144 (931)
Q Consensus 74 ~f~-l~~~Q~~ai~~l-~~g~~vlv~apTGsGKTl~~~l~i~~~l~--~~~rvl~l~P~kaL~~Q~~~~l~~~~~----- 144 (931)
+|+ |+|+|.++++.+ ..++|++|+||||||||++|++||+..+. ++.++||++|++||++|++++|.+.|+
T Consensus 923 ~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~ 1002 (1724)
T 4f92_B 923 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNK 1002 (1724)
T ss_dssp TCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCC
T ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCC
Confidence 466 999999999998 56789999999999999999999999884 467999999999999999999998765
Q ss_pred CeEEEecccccC----CCCCeeEecHHHHHHHHhcC--ccccCcccEEEEeccccCCCCCchHHHHHHHHh-------cC
Q 002357 145 DVGLMTGDVTLS----PNASCLVMTTEILRGMLYRG--SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF-------LP 211 (931)
Q Consensus 145 ~vg~~tGd~~~~----~~~~IlV~Tpe~L~~~l~~~--~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~-------l~ 211 (931)
.|+.++||.+.+ ..++|+|||||++..++.+. ...++++++||+||+|++.+ .+|..++.++.. ++
T Consensus 1003 ~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~~~~~ 1081 (1724)
T 4f92_B 1003 KVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQIE 1081 (1724)
T ss_dssp CEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHHHTTS
T ss_pred EEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHHhhcC
Confidence 588999998754 46899999999998887553 44578999999999999987 589999988754 46
Q ss_pred CCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhh
Q 002357 212 PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQK 291 (931)
Q Consensus 212 ~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 291 (931)
+++|+|+||||++|+.++++|++... ..++.+.++.||+|++.++....... .......
T Consensus 1082 ~~~riI~lSATl~N~~dla~WL~~~~-~~~~~~~~~~RPvpL~~~i~~~~~~~---------------~~~~~~~----- 1140 (1724)
T 4f92_B 1082 RPIRIVALSSSLSNAKDVAHWLGCSA-TSTFNFHPNVRPVPLELHIQGFNISH---------------TQTRLLS----- 1140 (1724)
T ss_dssp SCCEEEEEESCBTTHHHHHHHHTCCS-TTEEECCGGGCSSCEEEEEEEECCCS---------------HHHHHHT-----
T ss_pred CCceEEEEeCCCCCHHHHHHHhCCCC-CCeEEeCCCCCCCCeEEEEEeccCCC---------------chhhhhh-----
Confidence 78999999999999999999998543 46778889999999998775422110 0000000
Q ss_pred cCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHH-HcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHH---HHHHHHH
Q 002357 292 IGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIM-ERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEK---DTVEQVF 367 (931)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~-~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~---~~i~~~~ 367 (931)
....+...+. .....|+||||+||+.|+.+|..|........... ......+
T Consensus 1141 ------------------------~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l 1196 (1724)
T 4f92_B 1141 ------------------------MAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDL 1196 (1724)
T ss_dssp ------------------------THHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHH
T ss_pred ------------------------hcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHH
Confidence 0011112222 23567999999999999999988743110000000 0000111
Q ss_pred HHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceec
Q 002357 368 QNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKW 447 (931)
Q Consensus 368 ~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~ 447 (931)
...+..+. -..+.+++.+||++|||||++.+|+.|+++|++|.++|||||+++++|||+|+++|||.+..+|
T Consensus 1197 ~~~l~~~~--------d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~ 1268 (1724)
T 4f92_B 1197 IPYLEKLS--------DSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYY 1268 (1724)
T ss_dssp HHHHTTCC--------CHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEE
T ss_pred HHHHhhcc--------cHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccc
Confidence 12222221 1457789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC--cccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhhcc
Q 002357 448 DGDSH--RYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLEG 498 (931)
Q Consensus 448 d~~~~--~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~~~ 498 (931)
|+..+ .|.++.+|+||+|||||+|.|..|.+++++.+. +....++++.+.
T Consensus 1269 dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~-~~~~~~~ll~~~ 1320 (1724)
T 4f92_B 1269 NGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS-KKDFFKKFLYEP 1320 (1724)
T ss_dssp ETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGG-GHHHHHHHTTSC
T ss_pred cCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecch-HHHHHHHHhCCC
Confidence 99754 478999999999999999999999999999876 566777777654
No 6
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3.7e-47 Score=466.39 Aligned_cols=363 Identities=29% Similarity=0.407 Sum_probs=289.4
Q ss_pred hhhhccCCCC-CCHHHHHHHHH-HhcCCcEEEEcCCCCCcHHHHHHHHHHHHh-CCCEEEEEcCchhhHHHHHHHHHHhc
Q 002357 67 GEMAKTYSFE-LDPFQRVSVAC-LERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQEF 143 (931)
Q Consensus 67 ~~~~~~~~f~-l~~~Q~~ai~~-l~~g~~vlv~apTGsGKTl~~~l~i~~~l~-~~~rvl~l~P~kaL~~Q~~~~l~~~~ 143 (931)
......++|+ |+|+|.++++. +..+++++++||||||||++|.++++..+. ++.+++|++|+++|++|++++++.+.
T Consensus 13 ~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~ 92 (720)
T 2zj8_A 13 KSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWE 92 (720)
T ss_dssp HHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGG
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHH
Confidence 3444557895 99999999998 788999999999999999999999987765 68999999999999999999996432
Q ss_pred --C-CeEEEecccccCC----CCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceE
Q 002357 144 --K-DVGLMTGDVTLSP----NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKM 216 (931)
Q Consensus 144 --~-~vg~~tGd~~~~~----~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~ 216 (931)
+ .++.++|+...+. .++|+|+|||++..++.+....++++++||+||||++.+++||..++.++..++...|+
T Consensus 93 ~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~i 172 (720)
T 2zj8_A 93 KIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQI 172 (720)
T ss_dssp GGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBEE
T ss_pred hcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCeE
Confidence 3 8999999887654 68999999999999888777778999999999999999999999999999988778999
Q ss_pred EEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCc
Q 002357 217 VFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRR 296 (931)
Q Consensus 217 v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 296 (931)
|+||||++|..++++|++ ...+..+.||+|+...++..+ .++. .+....
T Consensus 173 i~lSATl~n~~~~~~~l~------~~~~~~~~rp~~l~~~~~~~~--~~~~-~~~~~~---------------------- 221 (720)
T 2zj8_A 173 IGLSATIGNPEELAEWLN------AELIVSDWRPVKLRRGVFYQG--FVTW-EDGSID---------------------- 221 (720)
T ss_dssp EEEECCCSCHHHHHHHTT------EEEEECCCCSSEEEEEEEETT--EEEE-TTSCEE----------------------
T ss_pred EEEcCCcCCHHHHHHHhC------CcccCCCCCCCcceEEEEeCC--eeec-cccchh----------------------
Confidence 999999999999999986 345677889999876554221 1111 010000
Q ss_pred CCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccC--CCCChHHHHHHHHHHHHHHhhc
Q 002357 297 ENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKL--DFNTQEEKDTVEQVFQNAVDCL 374 (931)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~--~~~~~~e~~~i~~~~~~~~~~l 374 (931)
........+.+.+ . .+.++||||+|++.|+.++..|.+. .+....+...+ ......+
T Consensus 222 ---------------~~~~~~~~~~~~~-~-~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~----~~~~~~i 280 (720)
T 2zj8_A 222 ---------------RFSSWEELVYDAI-R-KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRAL----NELADSL 280 (720)
T ss_dssp ---------------ECSSTTHHHHHHH-H-TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHH----HHHHHTS
T ss_pred ---------------hhhHHHHHHHHHH-h-CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHH----HHHHHHH
Confidence 0011122222222 2 4579999999999999999999652 12222222111 1122222
Q ss_pred CcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcc
Q 002357 375 NEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRY 454 (931)
Q Consensus 375 ~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~ 454 (931)
. ..+....+.+.+..||++|||+|++.+|+.+++.|++|.++|||||+++++|||+|++++||++...||+.+..|
T Consensus 281 ~----~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~ 356 (720)
T 2zj8_A 281 E----ENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMER 356 (720)
T ss_dssp C----SCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEE
T ss_pred h----cccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCcc
Confidence 1 223344578888999999999999999999999999999999999999999999999999998888899655679
Q ss_pred cCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 455 IGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 455 ~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
.+..+|.||+|||||.|.+..|.|++++++.
T Consensus 357 ~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 387 (720)
T 2zj8_A 357 IPIIEVHQMLGRAGRPKYDEVGEGIIVSTSD 387 (720)
T ss_dssp CCHHHHHHHHTTBCCTTTCSEEEEEEECSSS
T ss_pred CCHHHHHHHHhhcCCCCCCCCceEEEEecCc
Confidence 9999999999999999998899999999876
No 7
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1e-46 Score=462.60 Aligned_cols=370 Identities=30% Similarity=0.451 Sum_probs=280.5
Q ss_pred hhhccCCCC-CCHHHHHHHHH-HhcCCcEEEEcCCCCCcHHHHHHHHHHHHh-CCCEEEEEcCchhhHHHHHHHHHHhc-
Q 002357 68 EMAKTYSFE-LDPFQRVSVAC-LERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQEF- 143 (931)
Q Consensus 68 ~~~~~~~f~-l~~~Q~~ai~~-l~~g~~vlv~apTGsGKTl~~~l~i~~~l~-~~~rvl~l~P~kaL~~Q~~~~l~~~~- 143 (931)
.....++|+ |+|+|.++++. +.++++++++||||||||++|.++++..+. ++.+++|++|+++|++|++++++.+.
T Consensus 21 ~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~ 100 (715)
T 2va8_A 21 EIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWEL 100 (715)
T ss_dssp HHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGG
T ss_pred HHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhc
Confidence 344557895 99999999999 788999999999999999999999988775 78999999999999999999995432
Q ss_pred -C-CeEEEecccccCC----CCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEE
Q 002357 144 -K-DVGLMTGDVTLSP----NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMV 217 (931)
Q Consensus 144 -~-~vg~~tGd~~~~~----~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v 217 (931)
+ .++..+|+..... .++|+|+|||+|..++.++...++++++||+||||.+.+..||..++.++..++ +.|+|
T Consensus 101 ~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~-~~~ii 179 (715)
T 2va8_A 101 IGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK-RRNLL 179 (715)
T ss_dssp GTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH-TSEEE
T ss_pred CCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcc-cCcEE
Confidence 2 7899999887654 689999999999999888777789999999999999999899999999988877 89999
Q ss_pred EeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCce--eEeeCccchhchhhHHHHHHHHHhhhcCCC
Q 002357 218 FLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGL--YLVVDEKEQFREDNFVKLQDTFLKQKIGGR 295 (931)
Q Consensus 218 ~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 295 (931)
+||||++|..++++|++ ..++..+.||+|+...++..+.... ...........
T Consensus 180 ~lSATl~n~~~~~~~l~------~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 234 (715)
T 2va8_A 180 ALSATISNYKQIAKWLG------AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKK------------------- 234 (715)
T ss_dssp EEESCCTTHHHHHHHHT------CEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEE-------------------
T ss_pred EEcCCCCCHHHHHHHhC------CCccCCCCCCCCceEEEEecCCcccceeeecCcchhhh-------------------
Confidence 99999999999999996 3457788899998765543221110 11010000000
Q ss_pred cCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCC---CCChHHHHHHHHHHHHHHh
Q 002357 296 RENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLD---FNTQEEKDTVEQVFQNAVD 372 (931)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~---~~~~~e~~~i~~~~~~~~~ 372 (931)
.........++..+.. .++++||||++++.|+.++..|.+.. +....+...+. ....
T Consensus 235 ---------------~~~~~~~~~~~~~~~~-~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~----~~~~ 294 (715)
T 2va8_A 235 ---------------VHGDDAIIAYTLDSLS-KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEIL----KQLD 294 (715)
T ss_dssp ---------------EESSSHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHH----HHHH
T ss_pred ---------------cccchHHHHHHHHHHh-cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHH----HHHH
Confidence 0001112222222222 45799999999999999999997632 12222222222 2222
Q ss_pred hcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecC---C
Q 002357 373 CLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD---G 449 (931)
Q Consensus 373 ~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d---~ 449 (931)
.+. +........+.+++..||++|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||.+...|| +
T Consensus 295 ~i~--~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~ 372 (715)
T 2va8_A 295 DIE--EGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIA 372 (715)
T ss_dssp TCC--SSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------
T ss_pred Hhh--hccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCC
Confidence 221 11122234677788889999999999999999999999999999999999999999999999998777788 3
Q ss_pred CCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 450 DSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 450 ~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
....|.+..+|.||+|||||.|.+..|.|++++++.
T Consensus 373 ~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 408 (715)
T 2va8_A 373 GYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDK 408 (715)
T ss_dssp ------CHHHHHHHHTTBCCTTTCSCEEEEEECSCG
T ss_pred CCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCc
Confidence 334589999999999999999998899999999876
No 8
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=5.1e-46 Score=455.00 Aligned_cols=358 Identities=30% Similarity=0.458 Sum_probs=281.8
Q ss_pred hhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC---
Q 002357 69 MAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK--- 144 (931)
Q Consensus 69 ~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~--- 144 (931)
....++|+ |+|+|.++++.+.+|++++++||||||||++|.++++..+..+.+++|++|+++|++|++++++.+..
T Consensus 17 ~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~ 96 (702)
T 2p6r_A 17 ILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGL 96 (702)
T ss_dssp HHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTC
T ss_pred HHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCC
Confidence 34457884 99999999999999999999999999999999999999888899999999999999999999954322
Q ss_pred CeEEEecccccCC----CCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEE
Q 002357 145 DVGLMTGDVTLSP----NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMV 217 (931)
Q Consensus 145 ~vg~~tGd~~~~~----~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v 217 (931)
.++.++|+..... .++|+|+|||+|..++.+....++++++||+||||.+.+++||..++.++..+ ++..|+|
T Consensus 97 ~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii 176 (702)
T 2p6r_A 97 RIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVI 176 (702)
T ss_dssp CEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEE
T ss_pred EEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEE
Confidence 7899999887654 68999999999999988877778999999999999999999999999887765 5789999
Q ss_pred EeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcC
Q 002357 218 FLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRE 297 (931)
Q Consensus 218 ~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 297 (931)
+||||++|..++++|++ +.++..+.||+|+...++..+ .............
T Consensus 177 ~lSATl~n~~~~~~~l~------~~~~~~~~r~~~l~~~~~~~~--~~~~~~~~~~~~~--------------------- 227 (702)
T 2p6r_A 177 GLSATAPNVTEIAEWLD------ADYYVSDWRPVPLVEGVLCEG--TLELFDGAFSTSR--------------------- 227 (702)
T ss_dssp EEECCCTTHHHHHHHTT------CEEEECCCCSSCEEEEEECSS--EEEEEETTEEEEE---------------------
T ss_pred EECCCcCCHHHHHHHhC------CCcccCCCCCccceEEEeeCC--eeeccCcchhhhh---------------------
Confidence 99999999999999986 346778899999886554321 1111110000000
Q ss_pred CCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccC---CCCChHHHHHHHHHHHHHHhhc
Q 002357 298 NGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKL---DFNTQEEKDTVEQVFQNAVDCL 374 (931)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~---~~~~~~e~~~i~~~~~~~~~~l 374 (931)
......++..+.. .++++||||++++.|+.++..|.+. .+.... ... .+.
T Consensus 228 ----------------~~~~~~~~~~~~~-~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~---~~~-----~i~-- 280 (702)
T 2p6r_A 228 ----------------RVKFEELVEECVA-ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEG---LEK-----AIL-- 280 (702)
T ss_dssp ----------------ECCHHHHHHHHHH-TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSS---HHH-----HHH--
T ss_pred ----------------hhhHHHHHHHHHh-cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHH---HHH-----HHH--
Confidence 0002222222222 4578999999999999999998642 111110 000 000
Q ss_pred CcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcc
Q 002357 375 NEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRY 454 (931)
Q Consensus 375 ~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~ 454 (931)
. .........+.+++..||++|||+|++.+|+.+++.|++|.++|||||+++++|||+|++++||.+...||+. ..|
T Consensus 281 ~--~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~-~~~ 357 (702)
T 2p6r_A 281 E--ENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGY-SKR 357 (702)
T ss_dssp T--TCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSS-EEE
T ss_pred h--hccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCC-CCc
Confidence 0 1111223456777888999999999999999999999999999999999999999999999999888889943 568
Q ss_pred cCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 455 IGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 455 ~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
.+..+|.||+|||||.|.+..|.|++++++.
T Consensus 358 ~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 388 (702)
T 2p6r_A 358 IKVSEYKQMAGRAGRPGMDERGEAIIIVGKR 388 (702)
T ss_dssp CCHHHHHHHHTTBSCTTTCSCEEEEEECCGG
T ss_pred CCHHHHHHHhhhcCCCCCCCCceEEEEecCc
Confidence 9999999999999999998899999999876
No 9
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.5e-45 Score=423.35 Aligned_cols=313 Identities=20% Similarity=0.297 Sum_probs=255.9
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh--------CCCEEEEEcCchhhHHHHHHHHH
Q 002357 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR--------DKQRVIYTSPLKALSNQKYRELH 140 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~--------~~~rvl~l~P~kaL~~Q~~~~l~ 140 (931)
...++|+ |+|+|+++++.+.+|++++++||||||||++|++|++..+. .+.++||++||++|+.|++++++
T Consensus 71 l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 150 (434)
T 2db3_A 71 VNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEAR 150 (434)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHH
Confidence 3457888 99999999999999999999999999999999999988763 25689999999999999999999
Q ss_pred HhcC----CeEEEeccccc-------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHh
Q 002357 141 QEFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF 209 (931)
Q Consensus 141 ~~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~ 209 (931)
++.. .++.++|+.+. ..+++|+|+||++|.+++.++...+.++++||+||||+|.++++...+..++..
T Consensus 151 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~ 230 (434)
T 2db3_A 151 KFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTH 230 (434)
T ss_dssp HHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHC
T ss_pred HHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHh
Confidence 9864 57788888753 457899999999999999888878899999999999999999999999999887
Q ss_pred c--CCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCC--cceeeeeccCCCceeEeeCccchhchhhHHHHHH
Q 002357 210 L--PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPT--PLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQD 285 (931)
Q Consensus 210 l--~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~--pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (931)
+ ++..|++++|||+++. +..+......++..+........ .+.+.+ ..+..
T Consensus 231 ~~~~~~~q~l~~SAT~~~~--~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~---------~~~~~-------------- 285 (434)
T 2db3_A 231 VTMRPEHQTLMFSATFPEE--IQRMAGEFLKNYVFVAIGIVGGACSDVKQTI---------YEVNK-------------- 285 (434)
T ss_dssp TTSCSSCEEEEEESCCCHH--HHHHHHTTCSSCEEEEESSTTCCCTTEEEEE---------EECCG--------------
T ss_pred cCCCCCceEEEEeccCCHH--HHHHHHHhccCCEEEEeccccccccccceEE---------EEeCc--------------
Confidence 5 6789999999999855 34566655555555443322111 111111 11111
Q ss_pred HHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHH
Q 002357 286 TFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQ 365 (931)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~ 365 (931)
..+...+++.+.... .++||||++++.|+.++..|.+.++.
T Consensus 286 ----------------------------~~k~~~l~~~l~~~~-~~~lVF~~t~~~a~~l~~~L~~~~~~---------- 326 (434)
T 2db3_A 286 ----------------------------YAKRSKLIEILSEQA-DGTIVFVETKRGADFLASFLSEKEFP---------- 326 (434)
T ss_dssp ----------------------------GGHHHHHHHHHHHCC-TTEEEECSSHHHHHHHHHHHHHTTCC----------
T ss_pred ----------------------------HHHHHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhCCCC----------
Confidence 112234555555444 45999999999999999999876554
Q ss_pred HHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecce
Q 002357 366 VFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVK 445 (931)
Q Consensus 366 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~ 445 (931)
+..+||++++.+|+.+++.|++|..+|||||+++++|||+|++++||
T Consensus 327 -----------------------------~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI---- 373 (434)
T 2db3_A 327 -----------------------------TTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVI---- 373 (434)
T ss_dssp -----------------------------EEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEE----
T ss_pred -----------------------------EEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEE----
Confidence 68899999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 446 KWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 446 ~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
+||. |.+..+|+||+|||||.|.. |.+++++++.
T Consensus 374 ~~d~----p~~~~~y~qriGR~gR~g~~--G~a~~~~~~~ 407 (434)
T 2db3_A 374 NYDM----PSKIDDYVHRIGRTGRVGNN--GRATSFFDPE 407 (434)
T ss_dssp ESSC----CSSHHHHHHHHTTSSCTTCC--EEEEEEECTT
T ss_pred EECC----CCCHHHHHHHhcccccCCCC--CEEEEEEecc
Confidence 7888 88999999999999999985 7777777644
No 10
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.5e-43 Score=404.38 Aligned_cols=322 Identities=18% Similarity=0.329 Sum_probs=257.8
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh---CCCEEEEEcCchhhHHHHHHHHHHhcC-
Q 002357 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEFK- 144 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~---~~~rvl~l~P~kaL~~Q~~~~l~~~~~- 144 (931)
...++|+ |+|+|.++++.+.+|++++++||||+|||++|.++++..+. .+.++||++|+++|++|+++++..+..
T Consensus 52 l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 131 (410)
T 2j0s_A 52 IYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDY 131 (410)
T ss_dssp HHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred HHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhcc
Confidence 3457888 99999999999999999999999999999999999998764 568999999999999999999998864
Q ss_pred ---CeEEEeccccc-------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCc
Q 002357 145 ---DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAI 214 (931)
Q Consensus 145 ---~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~ 214 (931)
.++.++|+... ..+++|+|+||++|.+++.++...+.++++||+||||++.++++...+..++..+++..
T Consensus 132 ~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~ 211 (410)
T 2j0s_A 132 MNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 211 (410)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTC
T ss_pred CCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCc
Confidence 56777887653 23679999999999999988777788999999999999999999999999999999999
Q ss_pred eEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCC--CCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhc
Q 002357 215 KMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFR--PTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKI 292 (931)
Q Consensus 215 q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 292 (931)
|++++|||+++. +.+++......+..+...... +..+.++ +..+...
T Consensus 212 ~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-------------------- 260 (410)
T 2j0s_A 212 QVVLISATLPHE--ILEMTNKFMTDPIRILVKRDELTLEGIKQF---------FVAVERE-------------------- 260 (410)
T ss_dssp EEEEEESCCCHH--HHTTGGGTCSSCEEECCCGGGCSCTTEEEE---------EEEESST--------------------
T ss_pred eEEEEEcCCCHH--HHHHHHHHcCCCEEEEecCccccCCCceEE---------EEEeCcH--------------------
Confidence 999999999854 334555554555444332211 1111111 1111110
Q ss_pred CCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHh
Q 002357 293 GGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVD 372 (931)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~ 372 (931)
..+...+...+......++||||++++.|+.++..|...++.
T Consensus 261 ---------------------~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~----------------- 302 (410)
T 2j0s_A 261 ---------------------EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFT----------------- 302 (410)
T ss_dssp ---------------------THHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCC-----------------
T ss_pred ---------------------HhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCc-----------------
Confidence 112233444444445678999999999999999999876554
Q ss_pred hcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCC
Q 002357 373 CLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSH 452 (931)
Q Consensus 373 ~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~ 452 (931)
+..+||++++.+|+.+++.|++|..+|||||+++++|+|+|++++|| .||.
T Consensus 303 ----------------------~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi----~~~~--- 353 (410)
T 2j0s_A 303 ----------------------VSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII----NYDL--- 353 (410)
T ss_dssp ----------------------CEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEE----ESSC---
T ss_pred ----------------------eEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEE----EECC---
Confidence 68999999999999999999999999999999999999999999999 7777
Q ss_pred cccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHh
Q 002357 453 RYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKD 493 (931)
Q Consensus 453 ~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~ 493 (931)
|.++..|+||+||+||.|+. |.+++++++. +...+++
T Consensus 354 -p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~-~~~~~~~ 390 (410)
T 2j0s_A 354 -PNNRELYIHRIGRSGRYGRK--GVAINFVKND-DIRILRD 390 (410)
T ss_dssp -CSSHHHHHHHHTTSSGGGCC--EEEEEEEEGG-GHHHHHH
T ss_pred -CCCHHHHHHhcccccCCCCc--eEEEEEecHH-HHHHHHH
Confidence 88999999999999999974 7888887654 4344433
No 11
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=3.5e-43 Score=403.55 Aligned_cols=316 Identities=20% Similarity=0.281 Sum_probs=242.3
Q ss_pred hhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh---CCCEEEEEcCchhhHHHHHHHHHHhcC
Q 002357 69 MAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEFK 144 (931)
Q Consensus 69 ~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~---~~~rvl~l~P~kaL~~Q~~~~l~~~~~ 144 (931)
....++|. |+++|.++++.+.+|++++++||||+|||++|.++++..+. .+.++||++|+++|+.|+++.++.++.
T Consensus 54 ~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 133 (414)
T 3eiq_A 54 GIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGD 133 (414)
T ss_dssp HHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGG
T ss_pred HHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhc
Confidence 33457886 99999999999999999999999999999999999998875 567899999999999999999999864
Q ss_pred ----CeEEEeccccc--------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCC
Q 002357 145 ----DVGLMTGDVTL--------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPP 212 (931)
Q Consensus 145 ----~vg~~tGd~~~--------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~ 212 (931)
.++..+|+... ...++|+|+||++|.+++.++...+.++++||+||||++.+++++..+..++..+++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 213 (414)
T 3eiq_A 134 YMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNS 213 (414)
T ss_dssp GSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCT
T ss_pred ccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCC
Confidence 56666776543 256899999999999999887777889999999999999998899999999999999
Q ss_pred CceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCC--cceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhh
Q 002357 213 AIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPT--PLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQ 290 (931)
Q Consensus 213 ~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~--pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 290 (931)
..|++++|||+++.. ..++......+..+........ .+.++ +.....
T Consensus 214 ~~~~i~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~------------------- 263 (414)
T 3eiq_A 214 NTQVVLLSATMPSDV--LEVTKKFMRDPIRILVKKEELTLEGIRQF---------YINVER------------------- 263 (414)
T ss_dssp TCEEEEECSCCCHHH--HHHHTTTCSSCEEECCCCCCCCTTSCCEE---------EEECSS-------------------
T ss_pred CCeEEEEEEecCHHH--HHHHHHHcCCCEEEEecCCccCCCCceEE---------EEEeCh-------------------
Confidence 999999999997543 3555555554544433222111 11111 111110
Q ss_pred hcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHH
Q 002357 291 KIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNA 370 (931)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~ 370 (931)
...+...+...+......++||||++++.|+.++..|...++.
T Consensus 264 ----------------------~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~--------------- 306 (414)
T 3eiq_A 264 ----------------------EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFT--------------- 306 (414)
T ss_dssp ----------------------STTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCC---------------
T ss_pred ----------------------HHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCe---------------
Confidence 1112344555555556679999999999999999999876554
Q ss_pred HhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCC
Q 002357 371 VDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGD 450 (931)
Q Consensus 371 ~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~ 450 (931)
+..+||++++.+|..+++.|++|..+|||||+++++|||+|++++|| .||.
T Consensus 307 ------------------------~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi----~~~~- 357 (414)
T 3eiq_A 307 ------------------------VSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI----NYDL- 357 (414)
T ss_dssp ------------------------CEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEE----ESSC-
T ss_pred ------------------------EEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEE----EeCC-
Confidence 68999999999999999999999999999999999999999999999 6777
Q ss_pred CCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 451 SHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 451 ~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
|.++.+|+||+|||||.|.+ |.+++++++.
T Consensus 358 ---p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~ 387 (414)
T 3eiq_A 358 ---PTNRENYIHRIGRGGRFGRK--GVAINMVTEE 387 (414)
T ss_dssp ---CSSTHHHHHHSCCC---------CEEEEECST
T ss_pred ---CCCHHHhhhhcCcccCCCCC--ceEEEEEcHH
Confidence 88999999999999999975 7777777765
No 12
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.2e-42 Score=397.32 Aligned_cols=321 Identities=21% Similarity=0.315 Sum_probs=257.0
Q ss_pred ccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh---CCCEEEEEcCchhhHHHHHHHHHHhcC--
Q 002357 71 KTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEFK-- 144 (931)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~---~~~rvl~l~P~kaL~~Q~~~~l~~~~~-- 144 (931)
...+|+ |+|+|.++++.+.+|++++++||||+|||++|.++++..+. .+.++||++|+++|++|+++.++.++.
T Consensus 37 ~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 116 (400)
T 1s2m_A 37 FEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHC 116 (400)
T ss_dssp HHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTT
T ss_pred HHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 346887 99999999999999999999999999999999999988875 456899999999999999999999875
Q ss_pred --CeEEEecccc-------cCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCce
Q 002357 145 --DVGLMTGDVT-------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIK 215 (931)
Q Consensus 145 --~vg~~tGd~~-------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q 215 (931)
.++..+|+.. ....++|+|+||+++.+++.+....+.++++||+||||++.+.+++..+..++..+++..|
T Consensus 117 ~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~ 196 (400)
T 1s2m_A 117 GISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQ 196 (400)
T ss_dssp TCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCE
T ss_pred CceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCce
Confidence 5777888764 3467899999999999988887777899999999999999988888888888888888999
Q ss_pred EEEeccCCCChHHHHHHHHhhcCCCeEEEecCCC-CCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCC
Q 002357 216 MVFLSATMSNATQFAEWICHLHKQPCHVVYTDFR-PTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGG 294 (931)
Q Consensus 216 ~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~r-p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 294 (931)
++++|||++.. +.+++......+..+...... ...+.++ +......
T Consensus 197 ~i~lSAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~---------------------- 243 (400)
T 1s2m_A 197 SLLFSATFPLT--VKEFMVKHLHKPYEINLMEELTLKGITQY---------YAFVEER---------------------- 243 (400)
T ss_dssp EEEEESCCCHH--HHHHHHHHCSSCEEESCCSSCBCTTEEEE---------EEECCGG----------------------
T ss_pred EEEEEecCCHH--HHHHHHHHcCCCeEEEeccccccCCceeE---------EEEechh----------------------
Confidence 99999999854 446666555555443222111 1111111 1111111
Q ss_pred CcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhc
Q 002357 295 RRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCL 374 (931)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l 374 (931)
.+...+...+......++||||++++.++.++..|.+.++
T Consensus 244 --------------------~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~-------------------- 283 (400)
T 1s2m_A 244 --------------------QKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGY-------------------- 283 (400)
T ss_dssp --------------------GHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTC--------------------
T ss_pred --------------------hHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCC--------------------
Confidence 1122333444445667999999999999999999976443
Q ss_pred CcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcc
Q 002357 375 NEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRY 454 (931)
Q Consensus 375 ~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~ 454 (931)
++..+||++++.+|..+++.|++|.++|||||+++++|+|+|++++|| .||. |
T Consensus 284 -------------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi----~~~~----p 336 (400)
T 1s2m_A 284 -------------------SCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVI----NFDF----P 336 (400)
T ss_dssp -------------------CEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEE----ESSC----C
T ss_pred -------------------CeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEE----EeCC----C
Confidence 368899999999999999999999999999999999999999999999 6777 8
Q ss_pred cCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhh
Q 002357 455 IGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDM 494 (931)
Q Consensus 455 ~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l 494 (931)
.++.+|+||+|||||.|+. |.+++++++. +...++++
T Consensus 337 ~s~~~~~Qr~GR~gR~g~~--g~~~~l~~~~-~~~~~~~i 373 (400)
T 1s2m_A 337 KTAETYLHRIGRSGRFGHL--GLAINLINWN-DRFNLYKI 373 (400)
T ss_dssp SSHHHHHHHHCBSSCTTCC--EEEEEEECGG-GHHHHHHH
T ss_pred CCHHHHHHhcchhcCCCCC--ceEEEEeccc-hHHHHHHH
Confidence 8999999999999999974 8888888765 44444444
No 13
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.5e-43 Score=400.39 Aligned_cols=313 Identities=19% Similarity=0.226 Sum_probs=245.2
Q ss_pred ccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC---------------------CCEEEEEcCc
Q 002357 71 KTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---------------------KQRVIYTSPL 128 (931)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~---------------------~~rvl~l~P~ 128 (931)
..++|. |+|+|.++++.+.+|++++++||||+|||++|.+|++..+.. +.++||++||
T Consensus 31 ~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 110 (417)
T 2i4i_A 31 ELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPT 110 (417)
T ss_dssp HHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSS
T ss_pred HHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCc
Confidence 446775 999999999999999999999999999999999998876521 2579999999
Q ss_pred hhhHHHHHHHHHHhcC----CeEEEeccccc-------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCC
Q 002357 129 KALSNQKYRELHQEFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDR 197 (931)
Q Consensus 129 kaL~~Q~~~~l~~~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~ 197 (931)
++|++|+++.+++++. .++.++|+... ..+++|+|+||++|.+++..+...+.++++||+||||++.++
T Consensus 111 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~ 190 (417)
T 2i4i_A 111 RELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDM 190 (417)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhcc
Confidence 9999999999998764 57778887653 457899999999999999887777899999999999999998
Q ss_pred CchHHHHHHHHh--cCC--CceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCC--CcceeeeeccCCCceeEeeCc
Q 002357 198 ERGVVWEESIIF--LPP--AIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP--TPLQHYVFPVGGSGLYLVVDE 271 (931)
Q Consensus 198 ~~g~~~~~ii~~--l~~--~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp--~pl~~~~~~~~~~~~~~~~~~ 271 (931)
++...+..++.. ++. ..|++++|||+++.. ..++......+..+....... ..+.+.+ ..+..
T Consensus 191 ~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~~~~~ 259 (417)
T 2i4i_A 191 GFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEI--QMLARDFLDEYIFLAVGRVGSTSENITQKV---------VWVEE 259 (417)
T ss_dssp TCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHH--HHHHHHHCSSCEEEEEC----CCSSEEEEE---------EECCG
T ss_pred CcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHH--HHHHHHHcCCCEEEEeCCCCCCccCceEEE---------EEecc
Confidence 888888888774 333 689999999998553 244444444454443322111 1111111 11111
Q ss_pred cchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHc-CCCcEEEEecCHHHHHHHHHHhc
Q 002357 272 KEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMER-KFQPVIVFSFSRRECEQHAMSMS 350 (931)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~IVF~~sr~~~~~la~~L~ 350 (931)
. .+...+.+.+... ...++||||++++.|+.++..|.
T Consensus 260 ~------------------------------------------~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~ 297 (417)
T 2i4i_A 260 S------------------------------------------DKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLY 297 (417)
T ss_dssp G------------------------------------------GHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHH
T ss_pred H------------------------------------------hHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHH
Confidence 1 1112233333332 45689999999999999999997
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhc
Q 002357 351 KLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAM 430 (931)
Q Consensus 351 ~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~ 430 (931)
+.++. +..+||++++.+|..+++.|++|..+|||||+++++
T Consensus 298 ~~~~~---------------------------------------~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~ 338 (417)
T 2i4i_A 298 HEGYA---------------------------------------CTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 338 (417)
T ss_dssp HTTCC---------------------------------------EEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHT
T ss_pred HCCCC---------------------------------------eeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhc
Confidence 75543 689999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 431 GLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 431 GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
|+|+|++++|| .||. |.+..+|+||+|||||.|.. |.+++++++.
T Consensus 339 Gidip~v~~Vi----~~~~----p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~ 383 (417)
T 2i4i_A 339 GLDISNVKHVI----NFDL----PSDIEEYVHRIGRTGRVGNL--GLATSFFNER 383 (417)
T ss_dssp TSCCCCEEEEE----ESSC----CSSHHHHHHHHTTBCC--CC--EEEEEEECGG
T ss_pred CCCcccCCEEE----EEcC----CCCHHHHHHhcCccccCCCC--ceEEEEEccc
Confidence 99999999999 7777 88999999999999999974 8888888754
No 14
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=5.7e-42 Score=393.09 Aligned_cols=324 Identities=18% Similarity=0.244 Sum_probs=248.0
Q ss_pred ccCCCC-CCHHHHHHHHHHhcC--CcEEEEcCCCCCcHHHHHHHHHHHHhC---CCEEEEEcCchhhHHHHHHHHHHhcC
Q 002357 71 KTYSFE-LDPFQRVSVACLERN--ESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYRELHQEFK 144 (931)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~~g--~~vlv~apTGsGKTl~~~l~i~~~l~~---~~rvl~l~P~kaL~~Q~~~~l~~~~~ 144 (931)
..++|. |+|+|.++++.+..+ ++++++||||+|||++|.++++..+.. +.++||++|+++|+.|+++.++++..
T Consensus 41 ~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 120 (412)
T 3fht_A 41 YAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGK 120 (412)
T ss_dssp HHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHh
Confidence 457886 999999999999887 999999999999999999999988753 45899999999999999998888753
Q ss_pred -----CeEEEecccccCC----CCCeeEecHHHHHHHHhc-CccccCcccEEEEeccccCCC-CCchHHHHHHHHhcCCC
Q 002357 145 -----DVGLMTGDVTLSP----NASCLVMTTEILRGMLYR-GSEVLKEVAWVIFDEIHYMKD-RERGVVWEESIIFLPPA 213 (931)
Q Consensus 145 -----~vg~~tGd~~~~~----~~~IlV~Tpe~L~~~l~~-~~~~l~~l~~vViDEaH~l~~-~~~g~~~~~ii~~l~~~ 213 (931)
.++...|+..... .++|+|+||+++.+++.+ +...+.++++||+||||++.+ ..+...+..+...+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~ 200 (412)
T 3fht_A 121 FYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRN 200 (412)
T ss_dssp TSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTT
T ss_pred hcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCC
Confidence 5677777665433 479999999999998865 445578999999999999876 56677777788888999
Q ss_pred ceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCC--CCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhh
Q 002357 214 IKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFR--PTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQK 291 (931)
Q Consensus 214 ~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 291 (931)
.|++++|||+++... .+.......+..+...... ...+.++.. .....
T Consensus 201 ~~~i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~------------------- 250 (412)
T 3fht_A 201 CQMLLFSATFEDSVW--KFAQKVVPDPNVIKLKREEETLDTIKQYYV---------LCSSR------------------- 250 (412)
T ss_dssp CEEEEEESCCCHHHH--HHHHHHSSSCEEECCCGGGSSCTTEEEEEE---------ECSSH-------------------
T ss_pred ceEEEEEeecCHHHH--HHHHHhcCCCeEEeeccccccccCceEEEE---------EcCCh-------------------
Confidence 999999999986542 4444444444433322211 111111111 11110
Q ss_pred cCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHH
Q 002357 292 IGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAV 371 (931)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~ 371 (931)
......+...+......++||||++++.|+.++..|.+.++.
T Consensus 251 ----------------------~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~---------------- 292 (412)
T 3fht_A 251 ----------------------DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQ---------------- 292 (412)
T ss_dssp ----------------------HHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCC----------------
T ss_pred ----------------------HHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCe----------------
Confidence 011233444445556679999999999999999999875543
Q ss_pred hhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCC
Q 002357 372 DCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDS 451 (931)
Q Consensus 372 ~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~ 451 (931)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++|| .||...
T Consensus 293 -----------------------~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi----~~~~p~ 345 (412)
T 3fht_A 293 -----------------------VALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI----NFDLPV 345 (412)
T ss_dssp -----------------------CEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEE----ESSCCB
T ss_pred -----------------------EEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEE----EECCCC
Confidence 68999999999999999999999999999999999999999999999 566511
Q ss_pred Cc--ccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHH
Q 002357 452 HR--YIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTL 491 (931)
Q Consensus 452 ~~--~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l 491 (931)
.. ..+..+|+||+|||||.|.. |.+++++++..+...+
T Consensus 346 ~~~~~~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~~~~~~~ 385 (412)
T 3fht_A 346 DKDGNPDNETYLHRIGRTGRFGKR--GLAVNMVDSKHSMNIL 385 (412)
T ss_dssp CSSSSBCHHHHHHHHTTSSCTTCC--EEEEEEECSHHHHHHH
T ss_pred CCCCCcchheeecccCcccCCCCC--ceEEEEEcChhhHHHH
Confidence 00 15789999999999999974 8888888765333333
No 15
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.3e-42 Score=393.75 Aligned_cols=318 Identities=19% Similarity=0.285 Sum_probs=244.5
Q ss_pred ccCCCC-CCHHHHHHHHHHhcC--CcEEEEcCCCCCcHHHHHHHHHHHHh---CCCEEEEEcCchhhHHHHHHHHHHhcC
Q 002357 71 KTYSFE-LDPFQRVSVACLERN--ESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEFK 144 (931)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~~g--~~vlv~apTGsGKTl~~~l~i~~~l~---~~~rvl~l~P~kaL~~Q~~~~l~~~~~ 144 (931)
..++|. |+|+|.++++.+..+ ++++++||||+|||++|.++++..+. .+.++||++|+++|++|+++.+++++.
T Consensus 21 ~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 100 (395)
T 3pey_A 21 YAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGK 100 (395)
T ss_dssp HHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred HHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhc
Confidence 346776 999999999999887 99999999999999999999988874 467999999999999999999999765
Q ss_pred ----CeEEEeccccc---CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCC-CCchHHHHHHHHhcCCCceE
Q 002357 145 ----DVGLMTGDVTL---SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD-RERGVVWEESIIFLPPAIKM 216 (931)
Q Consensus 145 ----~vg~~tGd~~~---~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~-~~~g~~~~~ii~~l~~~~q~ 216 (931)
.++..+|+... ..+++|+|+||+++.+++.+....+.++++||+||||++.+ .++...+..+...+++..|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (395)
T 3pey_A 101 FTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQL 180 (395)
T ss_dssp TSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEE
T ss_pred ccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEE
Confidence 45556665432 23689999999999999988777789999999999999876 56777788888888999999
Q ss_pred EEeccCCCChHHHHHHHHhhcCCCeEEEecCC--CCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCC
Q 002357 217 VFLSATMSNATQFAEWICHLHKQPCHVVYTDF--RPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGG 294 (931)
Q Consensus 217 v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~--rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 294 (931)
+++|||+++.. ..+.......+..+..... ....+.+.. ......
T Consensus 181 i~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~---------------------- 227 (395)
T 3pey_A 181 VLFSATFADAV--RQYAKKIVPNANTLELQTNEVNVDAIKQLY---------MDCKNE---------------------- 227 (395)
T ss_dssp EEEESCCCHHH--HHHHHHHSCSCEEECCCGGGCSCTTEEEEE---------EECSSH----------------------
T ss_pred EEEEecCCHHH--HHHHHHhCCCCeEEEccccccccccccEEE---------EEcCch----------------------
Confidence 99999998653 2444444333333322111 111111111 111100
Q ss_pred CcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhc
Q 002357 295 RRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCL 374 (931)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l 374 (931)
......+...+......++||||++++.|+.++..|...++.
T Consensus 228 -------------------~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~------------------- 269 (395)
T 3pey_A 228 -------------------ADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHE------------------- 269 (395)
T ss_dssp -------------------HHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCC-------------------
T ss_pred -------------------HHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCc-------------------
Confidence 001112222223335578999999999999999999875543
Q ss_pred CcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCC--C
Q 002357 375 NEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDS--H 452 (931)
Q Consensus 375 ~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~--~ 452 (931)
+..+||++++.+|+.+++.|++|.++|||||+++++|||+|++++|| .||... .
T Consensus 270 --------------------~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi----~~~~p~~~~ 325 (395)
T 3pey_A 270 --------------------VSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVV----NYDLPTLAN 325 (395)
T ss_dssp --------------------CEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEE----ESSCCBCTT
T ss_pred --------------------EEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEE----EcCCCCCCc
Confidence 68999999999999999999999999999999999999999999999 566511 1
Q ss_pred cccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 453 RYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 453 ~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
.+.++.+|+||+|||||.|. .|.+++++.+.
T Consensus 326 ~~~s~~~~~Qr~GR~gR~g~--~g~~~~~~~~~ 356 (395)
T 3pey_A 326 GQADPATYIHRIGRTGRFGR--KGVAISFVHDK 356 (395)
T ss_dssp SSBCHHHHHHHHTTSSCTTC--CEEEEEEECSH
T ss_pred CCCCHHHhhHhccccccCCC--CceEEEEEech
Confidence 12389999999999999997 48888888765
No 16
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=5.3e-42 Score=390.61 Aligned_cols=322 Identities=21% Similarity=0.279 Sum_probs=255.0
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh---CCCEEEEEcCchhhHHHHHHHHHHhcC-
Q 002357 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEFK- 144 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~---~~~rvl~l~P~kaL~~Q~~~~l~~~~~- 144 (931)
...++|+ |+|+|.++++.+.+|++++++||||+|||++|.++++..+. .+.++||++|+++|++|+++++.++..
T Consensus 23 l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 102 (391)
T 1xti_A 23 IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKY 102 (391)
T ss_dssp HHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTT
T ss_pred HHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhh
Confidence 3456888 99999999999999999999999999999999999988764 356999999999999999999998842
Q ss_pred ----CeEEEecccccC--------CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCC-CchHHHHHHHHhcC
Q 002357 145 ----DVGLMTGDVTLS--------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDR-ERGVVWEESIIFLP 211 (931)
Q Consensus 145 ----~vg~~tGd~~~~--------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~-~~g~~~~~ii~~l~ 211 (931)
.++.++|+.+.. ..++|+|+||+++.+++.+....+.++++||+||||++.++ ++...+..++..++
T Consensus 103 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~ 182 (391)
T 1xti_A 103 MPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 182 (391)
T ss_dssp CTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSC
T ss_pred CCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCC
Confidence 688888886532 34799999999999998887777899999999999999874 55666777777888
Q ss_pred CCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCC---cceeeeeccCCCceeEeeCccchhchhhHHHHHHHHH
Q 002357 212 PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPT---PLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFL 288 (931)
Q Consensus 212 ~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~---pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 288 (931)
...|++++|||+++... ..+......+..+........ .+.++. .....
T Consensus 183 ~~~~~i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~----------------- 234 (391)
T 1xti_A 183 HEKQVMMFSATLSKEIR--PVCRKFMQDPMEIFVDDETKLTLHGLQQYY---------VKLKD----------------- 234 (391)
T ss_dssp SSSEEEEEESSCCSTHH--HHHHHHCSSCEEEECCCCCCCCCTTCEEEE---------EECCG-----------------
T ss_pred CCceEEEEEeeCCHHHH--HHHHHHcCCCeEEEecCccccCcccceEEE---------EEcCc-----------------
Confidence 89999999999987643 344444455555544322111 111111 11111
Q ss_pred hhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHH
Q 002357 289 KQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQ 368 (931)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~ 368 (931)
..+...+...+......++||||++++.|+.++..|...++.
T Consensus 235 -------------------------~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~------------- 276 (391)
T 1xti_A 235 -------------------------NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFP------------- 276 (391)
T ss_dssp -------------------------GGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCC-------------
T ss_pred -------------------------hhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCc-------------
Confidence 111233444555556789999999999999999999876543
Q ss_pred HHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecC
Q 002357 369 NAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448 (931)
Q Consensus 369 ~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d 448 (931)
+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++|| .||
T Consensus 277 --------------------------~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi----~~~ 326 (391)
T 1xti_A 277 --------------------------AIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF----NYD 326 (391)
T ss_dssp --------------------------EEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEE----ESS
T ss_pred --------------------------EEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEE----EeC
Confidence 57899999999999999999999999999999999999999999999 677
Q ss_pred CCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHh
Q 002357 449 GDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKD 493 (931)
Q Consensus 449 ~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~ 493 (931)
. |.++.+|+||+||+||.|. .|.+++++++..+...+..
T Consensus 327 ~----p~s~~~~~Qr~GR~~R~g~--~g~~~~~~~~~~~~~~~~~ 365 (391)
T 1xti_A 327 M----PEDSDTYLHRVARAGRFGT--KGLAITFVSDENDAKILND 365 (391)
T ss_dssp C----CSSHHHHHHHHCBCSSSCC--CCEEEEEECSHHHHHHHHH
T ss_pred C----CCCHHHHHHhcccccCCCC--ceEEEEEEcccchHHHHHH
Confidence 7 8899999999999999997 4778888876533333333
No 17
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2e-42 Score=413.58 Aligned_cols=335 Identities=16% Similarity=0.204 Sum_probs=249.1
Q ss_pred hhccCCCC-CCHHHHHHHHHHh--cCCcEEEEcCCCCCcHHHHHHHHHHHHhCC-------CEEEEEcCchhhHHHHHHH
Q 002357 69 MAKTYSFE-LDPFQRVSVACLE--RNESVLVSAHTSAGKTAVAEYAIAMAFRDK-------QRVIYTSPLKALSNQKYRE 138 (931)
Q Consensus 69 ~~~~~~f~-l~~~Q~~ai~~l~--~g~~vlv~apTGsGKTl~~~l~i~~~l~~~-------~rvl~l~P~kaL~~Q~~~~ 138 (931)
....++|. |+|+|.++++.+. .+++++++||||||||++|++|++..+..+ .++||++||++|+.|++++
T Consensus 86 ~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~ 165 (563)
T 3i5x_A 86 AITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAE 165 (563)
T ss_dssp HHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHH
Confidence 34567888 9999999999998 678999999999999999999999887443 4899999999999999999
Q ss_pred HHHhcC--------CeEEEeccccc--------CCCCCeeEecHHHHHHHHhcC-ccccCcccEEEEeccccCCCCCchH
Q 002357 139 LHQEFK--------DVGLMTGDVTL--------SPNASCLVMTTEILRGMLYRG-SEVLKEVAWVIFDEIHYMKDRERGV 201 (931)
Q Consensus 139 l~~~~~--------~vg~~tGd~~~--------~~~~~IlV~Tpe~L~~~l~~~-~~~l~~l~~vViDEaH~l~~~~~g~ 201 (931)
++.++. .+..++|+... ...++|+|+||++|.+++.+. ...++++++||+||||++.+++|+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~ 245 (563)
T 3i5x_A 166 VKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRD 245 (563)
T ss_dssp HHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHH
T ss_pred HHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHH
Confidence 998642 35667776653 236899999999999988765 3357889999999999999999999
Q ss_pred HHHHHHHhcC-------CCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCC-C--CCcceeeeeccCCCceeEeeCc
Q 002357 202 VWEESIIFLP-------PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDF-R--PTPLQHYVFPVGGSGLYLVVDE 271 (931)
Q Consensus 202 ~~~~ii~~l~-------~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~-r--p~pl~~~~~~~~~~~~~~~~~~ 271 (931)
.++.++..++ ..+|+++||||+++... ..+......+..+..... . +...... ...+.....
T Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 317 (563)
T 3i5x_A 246 DLETISGILNEKNSKSADNIKTLLFSATLDDKVQ--KLANNIMNKKECLFLDTVDKNEPEAHERI------DQSVVISEK 317 (563)
T ss_dssp HHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHH--HHTTTTCCSSEEEEEESSCSSSCSSCTTE------EEEEEEESS
T ss_pred HHHHHHHhhhhccccCccCceEEEEEccCCHHHH--HHHHHhcCCCceEEEeccCCCCccccccC------ceEEEECch
Confidence 9998877653 37899999999997642 333333343433332211 1 1111000 001111111
Q ss_pred cchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHH-cCCCcEEEEecCHHHHHHHHHHhc
Q 002357 272 KEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME-RKFQPVIVFSFSRRECEQHAMSMS 350 (931)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~~~IVF~~sr~~~~~la~~L~ 350 (931)
... .... .+..+...+.. ....++||||+|++.|+.++..|.
T Consensus 318 ~~~----~~~~---------------------------------~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~ 360 (563)
T 3i5x_A 318 FAN----SIFA---------------------------------AVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILK 360 (563)
T ss_dssp TTH----HHHH---------------------------------HHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHH
T ss_pred hHh----hHHH---------------------------------HHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHH
Confidence 000 0000 01122233332 356789999999999999999986
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhc
Q 002357 351 KLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAM 430 (931)
Q Consensus 351 ~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~ 430 (931)
..... ...+..|||+|++.+|+.+++.|++|.++|||||+++++
T Consensus 361 ~~~~~------------------------------------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~ 404 (563)
T 3i5x_A 361 NEFKK------------------------------------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGAR 404 (563)
T ss_dssp HHHTT------------------------------------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTS
T ss_pred HhccC------------------------------------CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhc
Confidence 52000 113788999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhh
Q 002357 431 GLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMV 495 (931)
Q Consensus 431 GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~ 495 (931)
|||+|++++|| +||. |.++.+|+||+|||||.|.. |.+++++.+. +...++.+.
T Consensus 405 GiDip~v~~VI----~~~~----p~s~~~y~Qr~GRagR~g~~--g~~i~~~~~~-e~~~~~~l~ 458 (563)
T 3i5x_A 405 GMDFPNVHEVL----QIGV----PSELANYIHRIGRTARSGKE--GSSVLFICKD-ELPFVRELE 458 (563)
T ss_dssp SCCCTTCCEEE----EESC----CSSTTHHHHHHTTSSCTTCC--EEEEEEEEGG-GHHHHHHHH
T ss_pred CCCcccCCEEE----EECC----CCchhhhhhhcCccccCCCC--ceEEEEEchh-HHHHHHHHH
Confidence 99999999999 7777 88999999999999999975 7777777654 555555554
No 18
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.9e-42 Score=382.38 Aligned_cols=302 Identities=21% Similarity=0.228 Sum_probs=242.5
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC----
Q 002357 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK---- 144 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~---- 144 (931)
...++|. |+|+|.++++.+.++++++++||||+|||++|.++++.. +.++||++|+++|++|+++++++++.
T Consensus 9 l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 85 (337)
T 2z0m_A 9 IREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---GMKSLVVTPTRELTRQVASHIRDIGRYMDT 85 (337)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---cCCEEEEeCCHHHHHHHHHHHHHHhhhcCC
Confidence 3457887 999999999999999999999999999999999888764 88999999999999999999998764
Q ss_pred CeEEEecccccC------CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEE
Q 002357 145 DVGLMTGDVTLS------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVF 218 (931)
Q Consensus 145 ~vg~~tGd~~~~------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~ 218 (931)
.++.++|+.... ..++|+|+||++|.+++.++...+.++++||+||||++.++++...+..++..++...++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (337)
T 2z0m_A 86 KVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGL 165 (337)
T ss_dssp CEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEEE
T ss_pred cEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEEE
Confidence 677788876532 35899999999999988877767889999999999999988888889999999999999999
Q ss_pred eccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCC
Q 002357 219 LSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRREN 298 (931)
Q Consensus 219 lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 298 (931)
+|||+++.. ..++......+..+. .......+.+.... +..
T Consensus 166 ~SAT~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~~--------------------------- 206 (337)
T 2z0m_A 166 FSATIPEEI--RKVVKDFITNYEEIE-ACIGLANVEHKFVH---------VKD--------------------------- 206 (337)
T ss_dssp EESCCCHHH--HHHHHHHSCSCEEEE-CSGGGGGEEEEEEE---------CSS---------------------------
T ss_pred EeCcCCHHH--HHHHHHhcCCceeee-cccccCCceEEEEE---------eCh---------------------------
Confidence 999998653 244444433333321 11111111211110 000
Q ss_pred CCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCccc
Q 002357 299 GKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEED 378 (931)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d 378 (931)
.....+..+......++||||++++.++.++..|.+
T Consensus 207 -----------------~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~--------------------------- 242 (337)
T 2z0m_A 207 -----------------DWRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFDN--------------------------- 242 (337)
T ss_dssp -----------------SSHHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCTT---------------------------
T ss_pred -----------------HHHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhhh---------------------------
Confidence 011223344445678899999999999999887753
Q ss_pred CCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHH
Q 002357 379 RNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSG 458 (931)
Q Consensus 379 ~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~ 458 (931)
+..+||++++.+|..+++.|++|.++|||||+++++|+|+|++++|| .||. |.++.
T Consensus 243 ----------------~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi----~~~~----~~s~~ 298 (337)
T 2z0m_A 243 ----------------AIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVI----NFDA----PQDLR 298 (337)
T ss_dssp ----------------EEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEE----ESSC----CSSHH
T ss_pred ----------------hhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEE----EecC----CCCHH
Confidence 57899999999999999999999999999999999999999999999 6777 88999
Q ss_pred HHHHhhhccCCCCCCCceEEEEEeC
Q 002357 459 EYIQMSGRAGRRGKDDRGICIIMVD 483 (931)
Q Consensus 459 ~y~Qr~GRaGR~G~~~~g~~ii~~~ 483 (931)
+|+||+|||||.|++ |.+++++.
T Consensus 299 ~~~Q~~GR~gR~g~~--g~~~~~~~ 321 (337)
T 2z0m_A 299 TYIHRIGRTGRMGRK--GEAITFIL 321 (337)
T ss_dssp HHHHHHTTBCGGGCC--EEEEEEES
T ss_pred HhhHhcCccccCCCC--ceEEEEEe
Confidence 999999999999985 66666665
No 19
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=6.1e-42 Score=409.87 Aligned_cols=340 Identities=16% Similarity=0.188 Sum_probs=250.7
Q ss_pred hhhhccCCCC-CCHHHHHHHHHHh--cCCcEEEEcCCCCCcHHHHHHHHHHHHhC-------CCEEEEEcCchhhHHHHH
Q 002357 67 GEMAKTYSFE-LDPFQRVSVACLE--RNESVLVSAHTSAGKTAVAEYAIAMAFRD-------KQRVIYTSPLKALSNQKY 136 (931)
Q Consensus 67 ~~~~~~~~f~-l~~~Q~~ai~~l~--~g~~vlv~apTGsGKTl~~~l~i~~~l~~-------~~rvl~l~P~kaL~~Q~~ 136 (931)
......++|+ |+|+|.++++.+. .|++++++||||+|||++|++|++..+.. +.++||++||++|+.|++
T Consensus 33 ~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~ 112 (579)
T 3sqw_A 33 HKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIE 112 (579)
T ss_dssp HHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHH
Confidence 3444568998 9999999999998 78899999999999999999999987743 358999999999999999
Q ss_pred HHHHHhcC--------CeEEEecccccC--------CCCCeeEecHHHHHHHHhcC-ccccCcccEEEEeccccCCCCCc
Q 002357 137 RELHQEFK--------DVGLMTGDVTLS--------PNASCLVMTTEILRGMLYRG-SEVLKEVAWVIFDEIHYMKDRER 199 (931)
Q Consensus 137 ~~l~~~~~--------~vg~~tGd~~~~--------~~~~IlV~Tpe~L~~~l~~~-~~~l~~l~~vViDEaH~l~~~~~ 199 (931)
+++.+++. .+..+.|+.... ..++|+|+||++|.+++.+. ...++.+++||+||||++.+++|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf 192 (579)
T 3sqw_A 113 AEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGF 192 (579)
T ss_dssp HHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTT
T ss_pred HHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCC
Confidence 99998752 355666765432 26899999999999988765 34678999999999999999999
Q ss_pred hHHHHHHHHhcC-------CCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCC-CCCcceeeeeccCCCceeEeeCc
Q 002357 200 GVVWEESIIFLP-------PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDF-RPTPLQHYVFPVGGSGLYLVVDE 271 (931)
Q Consensus 200 g~~~~~ii~~l~-------~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~-rp~pl~~~~~~~~~~~~~~~~~~ 271 (931)
...++.++..++ ..+|+++||||+++... ..+......+..+..... ...+..... ..........
T Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~----i~~~~~~~~~ 266 (579)
T 3sqw_A 193 RDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQ--KLANNIMNKKECLFLDTVDKNEPEAHER----IDQSVVISEK 266 (579)
T ss_dssp HHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHH--HHTTTTCCSSEEEEEESSCSSSCSSCTT----EEEEEEEESS
T ss_pred HHHHHHHHHHhhhhhcccccCceEEEEeccCChHHH--HHHHHHcCCCceEEEeecCccccccccc----cceEEEEecc
Confidence 999988877653 37899999999987642 334444444443332211 111100000 0001111111
Q ss_pred cchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHH-cCCCcEEEEecCHHHHHHHHHHhc
Q 002357 272 KEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME-RKFQPVIVFSFSRRECEQHAMSMS 350 (931)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~~~IVF~~sr~~~~~la~~L~ 350 (931)
... .... .+..+...+.. ....++||||+|++.|+.++..|.
T Consensus 267 ~~~----~~~~---------------------------------~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~ 309 (579)
T 3sqw_A 267 FAN----SIFA---------------------------------AVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILK 309 (579)
T ss_dssp TTH----HHHH---------------------------------HHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHH
T ss_pred hhh----hHHH---------------------------------HHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHH
Confidence 000 0000 11122333333 345789999999999999999986
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhc
Q 002357 351 KLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAM 430 (931)
Q Consensus 351 ~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~ 430 (931)
..... ...+..+||+|++.+|+.+++.|++|.++|||||+++++
T Consensus 310 ~~~~~------------------------------------~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~ 353 (579)
T 3sqw_A 310 NEFKK------------------------------------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGAR 353 (579)
T ss_dssp HHHTT------------------------------------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTS
T ss_pred HhhcC------------------------------------CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhc
Confidence 52000 113688999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhh
Q 002357 431 GLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVL 496 (931)
Q Consensus 431 GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~ 496 (931)
|||+|++++|| +||. |.++..|+||+|||||.|.. |.+++++.+. +...++.+..
T Consensus 354 GiDip~v~~VI----~~~~----p~s~~~y~Qr~GRagR~g~~--g~~i~~~~~~-e~~~~~~l~~ 408 (579)
T 3sqw_A 354 GMDFPNVHEVL----QIGV----PSELANYIHRIGRTARSGKE--GSSVLFICKD-ELPFVRELED 408 (579)
T ss_dssp SCCCTTCCEEE----EESC----CSSTTHHHHHHTTSSCTTCC--EEEEEEEEGG-GHHHHHHHHH
T ss_pred CCCcccCCEEE----EcCC----CCCHHHhhhhccccccCCCC--ceEEEEEccc-HHHHHHHHHH
Confidence 99999999999 7777 88999999999999999975 7777777654 5555555543
No 20
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=3.2e-43 Score=411.83 Aligned_cols=325 Identities=19% Similarity=0.256 Sum_probs=137.6
Q ss_pred ccCCCC-CCHHHHHHHHHHhcC--CcEEEEcCCCCCcHHHHHHHHHHHHhCC---CEEEEEcCchhhHHHHHHHHHHhcC
Q 002357 71 KTYSFE-LDPFQRVSVACLERN--ESVLVSAHTSAGKTAVAEYAIAMAFRDK---QRVIYTSPLKALSNQKYRELHQEFK 144 (931)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~~g--~~vlv~apTGsGKTl~~~l~i~~~l~~~---~rvl~l~P~kaL~~Q~~~~l~~~~~ 144 (931)
..++|. |+|+|.++++.+..+ ++++++||||||||++|+++++..+..+ .++||++|+++|+.|+++.++.+..
T Consensus 108 ~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 187 (479)
T 3fmp_B 108 YAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGK 187 (479)
T ss_dssp HHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHh
Confidence 457887 999999999999876 9999999999999999999999887543 4899999999999999888877643
Q ss_pred -----CeEEEecccccCC----CCCeeEecHHHHHHHHhc-CccccCcccEEEEeccccCCC-CCchHHHHHHHHhcCCC
Q 002357 145 -----DVGLMTGDVTLSP----NASCLVMTTEILRGMLYR-GSEVLKEVAWVIFDEIHYMKD-RERGVVWEESIIFLPPA 213 (931)
Q Consensus 145 -----~vg~~tGd~~~~~----~~~IlV~Tpe~L~~~l~~-~~~~l~~l~~vViDEaH~l~~-~~~g~~~~~ii~~l~~~ 213 (931)
.++...|+..... .++|+|+||++|.+++.+ +...+.++++||+||||++.+ .++...+..+...+++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~ 267 (479)
T 3fmp_B 188 FYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRN 267 (479)
T ss_dssp TSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTT
T ss_pred hCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCcc
Confidence 4666676655433 468999999999998865 344568999999999999986 56666677777788899
Q ss_pred ceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCC--cceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhh
Q 002357 214 IKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPT--PLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQK 291 (931)
Q Consensus 214 ~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~--pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 291 (931)
.|++++|||+++... .+.......+..+........ .+.++ +.....
T Consensus 268 ~~~i~~SAT~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------~~~~~~-------------------- 316 (479)
T 3fmp_B 268 CQMLLFSATFEDSVW--KFAQKVVPDPNVIKLKREEETLDTIKQY---------YVLCSS-------------------- 316 (479)
T ss_dssp SEEEEEESCCCHHHH--HHHHHHSSSEEEEEEC-----------------------------------------------
T ss_pred ceEEEEeCCCCHHHH--HHHHHHcCCCeEEeccccccCcCCceEE---------EEEeCC--------------------
Confidence 999999999986542 344444443433332221111 01110 000000
Q ss_pred cCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHH
Q 002357 292 IGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAV 371 (931)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~ 371 (931)
.......+...+......++||||++++.|+.++..|...++
T Consensus 317 ---------------------~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~----------------- 358 (479)
T 3fmp_B 317 ---------------------RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGH----------------- 358 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------HHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCc-----------------
Confidence 011122233333334557899999999999999999977543
Q ss_pred hhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCC
Q 002357 372 DCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDS 451 (931)
Q Consensus 372 ~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~ 451 (931)
++.++||+|++.+|+.+++.|++|.++|||||+++++|||+|++++|| +||...
T Consensus 359 ----------------------~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI----~~d~p~ 412 (479)
T 3fmp_B 359 ----------------------QVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI----NFDLPV 412 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------cEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEE----EecCCC
Confidence 368999999999999999999999999999999999999999999999 566511
Q ss_pred Cc--ccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHH
Q 002357 452 HR--YIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLK 492 (931)
Q Consensus 452 ~~--~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~ 492 (931)
.. ..+..+|+||+|||||.|.. |.+++++++..+...++
T Consensus 413 ~~~~~~s~~~~~Qr~GRagR~g~~--G~~i~~~~~~~~~~~~~ 453 (479)
T 3fmp_B 413 DKDGNPDNETYLHRIGRTGRFGKR--GLAVNMVDSKHSMNILN 453 (479)
T ss_dssp -------------------------------------------
T ss_pred CCccCCCHHHHHHHhcccccCCCC--ceEEEEEcCcchHHHHH
Confidence 00 14678999999999999974 77888777653333333
No 21
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.3e-41 Score=381.41 Aligned_cols=319 Identities=20% Similarity=0.262 Sum_probs=251.1
Q ss_pred hccCCCC-CCHHHHHHHHHHhcC-CcEEEEcCCCCCcHHHHHHHHHHHHhC--CCEEEEEcCchhhHHHHHHHHHHhcC-
Q 002357 70 AKTYSFE-LDPFQRVSVACLERN-ESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSNQKYRELHQEFK- 144 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g-~~vlv~apTGsGKTl~~~l~i~~~l~~--~~rvl~l~P~kaL~~Q~~~~l~~~~~- 144 (931)
...++|. |+|+|.++++.+.++ ++++++||||+|||++|.+++...+.. +.+++|++|+++|+.|+++++..+++
T Consensus 21 l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 100 (367)
T 1hv8_A 21 IRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGN 100 (367)
T ss_dssp HHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCS
T ss_pred HHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCC
Confidence 3456775 999999999999877 799999999999999999998887753 77999999999999999999999876
Q ss_pred ---CeEEEecccccC------CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCce
Q 002357 145 ---DVGLMTGDVTLS------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIK 215 (931)
Q Consensus 145 ---~vg~~tGd~~~~------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q 215 (931)
.++.++|+.... .+++|+|+||+++.+.+.++...+.++++||+||||.+.++++...+..++..+++..+
T Consensus 101 ~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~ 180 (367)
T 1hv8_A 101 KNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKR 180 (367)
T ss_dssp SCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCE
T ss_pred CCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCce
Confidence 466777776532 26899999999999999887777889999999999999998888888888888999999
Q ss_pred EEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCC
Q 002357 216 MVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGR 295 (931)
Q Consensus 216 ~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 295 (931)
++++|||+++.. ..++.........+. .. .+..+.+... .....
T Consensus 181 ~i~~SAT~~~~~--~~~~~~~~~~~~~~~-~~-~~~~~~~~~~---------~~~~~----------------------- 224 (367)
T 1hv8_A 181 ILLFSATMPREI--LNLAKKYMGDYSFIK-AK-INANIEQSYV---------EVNEN----------------------- 224 (367)
T ss_dssp EEEECSSCCHHH--HHHHHHHCCSEEEEE-CC-SSSSSEEEEE---------ECCGG-----------------------
T ss_pred EEEEeeccCHHH--HHHHHHHcCCCeEEE-ec-CCCCceEEEE---------EeChH-----------------------
Confidence 999999998553 244444433322222 11 1112222111 11111
Q ss_pred cCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcC
Q 002357 296 RENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLN 375 (931)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~ 375 (931)
.....+.+.+. ....++||||++++.++.++..|.+.++.
T Consensus 225 -------------------~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~-------------------- 264 (367)
T 1hv8_A 225 -------------------ERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFK-------------------- 264 (367)
T ss_dssp -------------------GHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCC--------------------
T ss_pred -------------------HHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCC--------------------
Confidence 11222333332 45578999999999999999999775543
Q ss_pred cccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCccc
Q 002357 376 EEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYI 455 (931)
Q Consensus 376 ~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~ 455 (931)
+..+||++++.+|+.+++.|++|..+|||||+++++|+|+|++++|| .||. |.
T Consensus 265 -------------------~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi----~~~~----~~ 317 (367)
T 1hv8_A 265 -------------------AGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI----NYHL----PQ 317 (367)
T ss_dssp -------------------EEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEE----ESSC----CS
T ss_pred -------------------eEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEE----EecC----CC
Confidence 68999999999999999999999999999999999999999999999 6777 88
Q ss_pred CHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhh
Q 002357 456 GSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDM 494 (931)
Q Consensus 456 s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l 494 (931)
++.+|+||+|||||.|++ |.+++++++. +...+..+
T Consensus 318 s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~-~~~~~~~i 353 (367)
T 1hv8_A 318 NPESYMHRIGRTGRAGKK--GKAISIINRR-EYKKLRYI 353 (367)
T ss_dssp CHHHHHHHSTTTCCSSSC--CEEEEEECTT-SHHHHHHH
T ss_pred CHHHhhhcccccccCCCc--cEEEEEEcHH-HHHHHHHH
Confidence 999999999999999975 6667766654 44444443
No 22
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.6e-41 Score=401.27 Aligned_cols=325 Identities=21% Similarity=0.280 Sum_probs=245.7
Q ss_pred CchhhhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhc
Q 002357 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEF 143 (931)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~ 143 (931)
+...+...|+|. |+|+|.++|+.+..|+++++.+|||+|||++|++|++. .++++||++|+++|+.|+++.+.+..
T Consensus 32 l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~---~~g~~lVisP~~~L~~q~~~~l~~~g 108 (591)
T 2v1x_A 32 VKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC---SDGFTLVICPLISLMEDQLMVLKQLG 108 (591)
T ss_dssp HHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT---SSSEEEEECSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH---cCCcEEEEeCHHHHHHHHHHHHHhcC
Confidence 344555668997 99999999999999999999999999999999998865 46799999999999999999999986
Q ss_pred CCeEEEeccccc-------------CCCCCeeEecHHHHH------HHHhcCccccCcccEEEEeccccCCCCC--chHH
Q 002357 144 KDVGLMTGDVTL-------------SPNASCLVMTTEILR------GMLYRGSEVLKEVAWVIFDEIHYMKDRE--RGVV 202 (931)
Q Consensus 144 ~~vg~~tGd~~~-------------~~~~~IlV~Tpe~L~------~~l~~~~~~l~~l~~vViDEaH~l~~~~--~g~~ 202 (931)
-.++.++|+.+. +...+|+|+|||+|. +.+.+ ...+.++++|||||||++.+++ |...
T Consensus 109 i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~iViDEAH~is~~g~dfr~~ 187 (591)
T 2v1x_A 109 ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRIAVDEVHCCSQWGHDFRPD 187 (591)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEEEEEETGGGGSTTCTTCCGG
T ss_pred CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcEEEEECcccccccccccHHH
Confidence 688888887642 467899999999874 22222 2346789999999999999876 4455
Q ss_pred HHH--HHHhcCCCceEEEeccCCCChH--HHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchh
Q 002357 203 WEE--SIIFLPPAIKMVFLSATMSNAT--QFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFRED 278 (931)
Q Consensus 203 ~~~--ii~~l~~~~q~v~lSAT~~n~~--e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (931)
+.. .+....+.+++++||||+++.. ++..|++. ....++........+...+ .......
T Consensus 188 ~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~---~~~~~~~~~~~r~nl~~~v------------~~~~~~~-- 250 (591)
T 2v1x_A 188 YKALGILKRQFPNASLIGLTATATNHVLTDAQKILCI---EKCFTFTASFNRPNLYYEV------------RQKPSNT-- 250 (591)
T ss_dssp GGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTC---CSCEEEECCCCCTTEEEEE------------EECCSSH--
T ss_pred HHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCC---CCcEEEecCCCCcccEEEE------------EeCCCcH--
Confidence 443 3444455799999999998653 34444432 2223333332222221111 1000000
Q ss_pred hHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHH-cCCCcEEEEecCHHHHHHHHHHhccCCCCCh
Q 002357 279 NFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME-RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQ 357 (931)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~ 357 (931)
...+..+++.+.. ..+.++||||+|++.|+.++..|...++.
T Consensus 251 -----------------------------------~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~-- 293 (591)
T 2v1x_A 251 -----------------------------------EDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIH-- 293 (591)
T ss_dssp -----------------------------------HHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCC--
T ss_pred -----------------------------------HHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCC--
Confidence 0112234444432 24578999999999999999999876554
Q ss_pred HHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCc
Q 002357 358 EEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAK 437 (931)
Q Consensus 358 ~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~ 437 (931)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++
T Consensus 294 -------------------------------------~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V 336 (591)
T 2v1x_A 294 -------------------------------------AGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDV 336 (591)
T ss_dssp -------------------------------------EEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCE
T ss_pred -------------------------------------EEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccc
Confidence 6899999999999999999999999999999999999999999
Q ss_pred EEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhh
Q 002357 438 TVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMV 495 (931)
Q Consensus 438 ~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~ 495 (931)
++|| +||. |.+..+|+||+|||||.|. .|.|++++++. +...+..++
T Consensus 337 ~~VI----~~~~----p~s~~~y~Qr~GRaGR~G~--~g~~i~l~~~~-D~~~~~~~~ 383 (591)
T 2v1x_A 337 RFVI----HHSM----SKSMENYYQESGRAGRDDM--KADCILYYGFG-DIFRISSMV 383 (591)
T ss_dssp EEEE----ESSC----CSSHHHHHHHHTTSCTTSS--CEEEEEEECHH-HHHHHHHHT
T ss_pred cEEE----EeCC----CCCHHHHHHHhccCCcCCC--CceEEEEEChH-HHHHHHHHH
Confidence 9999 7887 8899999999999999997 48888888754 444444444
No 23
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=9.2e-42 Score=391.94 Aligned_cols=308 Identities=17% Similarity=0.188 Sum_probs=235.3
Q ss_pred CchhhhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC
Q 002357 65 YNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK 144 (931)
Q Consensus 65 ~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~ 144 (931)
+...+...++|+|+|+|.++++.+.+|++++++||||||||++|++++......+.++||++||++|+.|+++.++.++.
T Consensus 10 ~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 89 (414)
T 3oiy_A 10 FRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLAD 89 (414)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHcc
Confidence 34456667899999999999999999999999999999999999999888888899999999999999999999999754
Q ss_pred ---CeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCC-----------CCc
Q 002357 145 ---DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD-----------RER 199 (931)
Q Consensus 145 ---~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~-----------~~~ 199 (931)
.++.++|+.+. +..++|+|+||++|.+++.. ..+.++++||+||||++.+ .++
T Consensus 90 ~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~ 167 (414)
T 3oiy_A 90 EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGI 167 (414)
T ss_dssp SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTC
T ss_pred CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHHhhcCC
Confidence 78889998865 23489999999999887764 4467899999999998764 344
Q ss_pred hHH-HHHHHHhcC-----------CCceEEEeccCC-CChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCcee
Q 002357 200 GVV-WEESIIFLP-----------PAIKMVFLSATM-SNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLY 266 (931)
Q Consensus 200 g~~-~~~ii~~l~-----------~~~q~v~lSAT~-~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~ 266 (931)
... +..++..++ ...|++++|||+ |.... ..+...... ..+......+..+.+..+.
T Consensus 168 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~i~~~~~~------- 237 (414)
T 3oiy_A 168 PEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIR-PLLFRDLLN--FTVGRLVSVARNITHVRIS------- 237 (414)
T ss_dssp CHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSST-THHHHHHHS--CCSSCCCCCCCSEEEEEES-------
T ss_pred cHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhH-HHHHHHhhc--cCcCccccccccchheeec-------
Confidence 444 667777776 789999999994 43321 112222111 0000001111112221110
Q ss_pred EeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHH
Q 002357 267 LVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHA 346 (931)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la 346 (931)
. .....+...+.. .+.++||||++++.|+.++
T Consensus 238 --~---------------------------------------------~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~ 269 (414)
T 3oiy_A 238 --S---------------------------------------------RSKEKLVELLEI-FRDGILIFAQTEEEGKELY 269 (414)
T ss_dssp --S---------------------------------------------CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHH
T ss_pred --c---------------------------------------------CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHH
Confidence 0 112233444444 3478999999999999999
Q ss_pred HHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccce-eccCCCCHHHHHHHHHHHhcCCceEEEe-
Q 002357 347 MSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIA-VHHSGLLPVIKELVELLFQEGLVKALFA- 424 (931)
Q Consensus 347 ~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~-~~hg~l~~~~R~~v~~~F~~g~i~vLva- 424 (931)
..|...++. +. .+||. +|+ ++.|++|.++||||
T Consensus 270 ~~L~~~~~~---------------------------------------~~~~~h~~----~r~--~~~f~~g~~~vLvat 304 (414)
T 3oiy_A 270 EYLKRFKFN---------------------------------------VGETWSEF----EKN--FEDFKVGKINILIGV 304 (414)
T ss_dssp HHHHHTTCC---------------------------------------EEESSSCH----HHH--HHHHHTTSCSEEEEE
T ss_pred HHHHHcCCc---------------------------------------eehhhcCc----chH--HHHHhCCCCeEEEEe
Confidence 999876654 45 78885 444 99999999999999
Q ss_pred ---cchhhcccCCCC-cEEEEecceecCCCCCcc--cCHHHHHHhhhccCCCCCC--CceEEEEEeCCc
Q 002357 425 ---TETFAMGLNMPA-KTVVFTAVKKWDGDSHRY--IGSGEYIQMSGRAGRRGKD--DRGICIIMVDEQ 485 (931)
Q Consensus 425 ---T~~la~GIdip~-~~vVI~~~~~~d~~~~~~--~s~~~y~Qr~GRaGR~G~~--~~g~~ii~~~~~ 485 (931)
|+++++|||+|+ +++|| +||. | .++.+|+||+|||||.|.+ ..|.+++++++.
T Consensus 305 ~s~T~~~~~GiDip~~v~~VI----~~~~----p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~~ 365 (414)
T 3oiy_A 305 QAYYGKLTRGVDLPERIKYVI----FWGT----PSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDE 365 (414)
T ss_dssp CCTTCCCCCCCCCTTTCCEEE----EESC----CTTTCHHHHHHHHGGGCCEETTEECCEEEEEECCCH
T ss_pred cCcCchhhccCccccccCEEE----EECC----CCCCCHHHHHHHhCccccCCCCCCcceEEEEEEccH
Confidence 999999999999 99999 7887 8 8999999999999999976 479999999443
No 24
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=5.7e-41 Score=394.43 Aligned_cols=322 Identities=19% Similarity=0.244 Sum_probs=246.3
Q ss_pred CchhhhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhc
Q 002357 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEF 143 (931)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~ 143 (931)
....+...|+|. |+|+|.++++.+.+|+++++.+|||+|||++|++|++. .++++||++|+++|++|+++.+....
T Consensus 13 ~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~g~~lvi~P~~aL~~q~~~~l~~~g 89 (523)
T 1oyw_A 13 AKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL---LNGLTVVVSPLISLMKDQVDQLQANG 89 (523)
T ss_dssp HHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH---SSSEEEEECSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH---hCCCEEEECChHHHHHHHHHHHHHcC
Confidence 344555668997 99999999999999999999999999999999998764 36789999999999999999999987
Q ss_pred CCeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCC--chHHHHHH---H
Q 002357 144 KDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRE--RGVVWEES---I 207 (931)
Q Consensus 144 ~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~--~g~~~~~i---i 207 (931)
..+..++|+.+. ....+|+|+|||+|.+..........++++||+||||++.+++ +...+..+ .
T Consensus 90 i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~ 169 (523)
T 1oyw_A 90 VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLR 169 (523)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHH
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHH
Confidence 788888887642 2458999999999864322222234689999999999999876 33443332 3
Q ss_pred HhcCCCceEEEeccCCCChH--HHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHH
Q 002357 208 IFLPPAIKMVFLSATMSNAT--QFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQD 285 (931)
Q Consensus 208 ~~l~~~~q~v~lSAT~~n~~--e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (931)
..+ +..++++||||+++.. ++..|++. ..+........+|. +... +...
T Consensus 170 ~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~--~~~~~~~~~~~r~~-l~~~-----------v~~~-------------- 220 (523)
T 1oyw_A 170 QRF-PTLPFMALTATADDTTRQDIVRLLGL--NDPLIQISSFDRPN-IRYM-----------LMEK-------------- 220 (523)
T ss_dssp HHC-TTSCEEEEESCCCHHHHHHHHHHHTC--CSCEEEECCCCCTT-EEEE-----------EEEC--------------
T ss_pred HhC-CCCCEEEEeCCCCHHHHHHHHHHhCC--CCCeEEeCCCCCCc-eEEE-----------EEeC--------------
Confidence 334 4689999999998653 45566642 22322222222221 1111 1110
Q ss_pred HHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHH
Q 002357 286 TFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQ 365 (931)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~ 365 (931)
......+++.+....+.++||||+|++.|+.++..|...++.
T Consensus 221 ----------------------------~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~---------- 262 (523)
T 1oyw_A 221 ----------------------------FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGIS---------- 262 (523)
T ss_dssp ----------------------------SSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCC----------
T ss_pred ----------------------------CCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCC----------
Confidence 112334566666666679999999999999999999876553
Q ss_pred HHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecce
Q 002357 366 VFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVK 445 (931)
Q Consensus 366 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~ 445 (931)
+..|||+|++.+|+.+++.|++|.++|||||+++++|||+|++++||
T Consensus 263 -----------------------------~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI---- 309 (523)
T 1oyw_A 263 -----------------------------AAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV---- 309 (523)
T ss_dssp -----------------------------EEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEE----
T ss_pred -----------------------------EEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEE----
Confidence 68999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhhh
Q 002357 446 KWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVL 496 (931)
Q Consensus 446 ~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~~ 496 (931)
+||. |.+..+|+||+|||||.|.. |.+++++++. +...++.++.
T Consensus 310 ~~~~----p~s~~~y~Qr~GRaGR~g~~--~~~~l~~~~~-d~~~~~~~~~ 353 (523)
T 1oyw_A 310 HFDI----PRNIESYYQETGRAGRDGLP--AEAMLFYDPA-DMAWLRRCLE 353 (523)
T ss_dssp ESSC----CSSHHHHHHHHTTSCTTSSC--EEEEEEECHH-HHHHHHHHHH
T ss_pred EECC----CCCHHHHHHHhccccCCCCC--ceEEEEeCHH-HHHHHHHHHh
Confidence 7777 89999999999999999974 7888887754 4444444443
No 25
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.6e-42 Score=393.44 Aligned_cols=314 Identities=20% Similarity=0.286 Sum_probs=147.0
Q ss_pred ccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh---CCCEEEEEcCchhhHHHHHHHHHHhcC--
Q 002357 71 KTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEFK-- 144 (931)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~---~~~rvl~l~P~kaL~~Q~~~~l~~~~~-- 144 (931)
..++|. |+|+|.++++.+.+|++++++||||+|||++|.++++..+. .+.++||++|+++|++|+++.+.+++.
T Consensus 37 ~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 116 (394)
T 1fuu_A 37 FGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM 116 (394)
T ss_dssp HHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred HHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 346785 99999999999999999999999999999999999988764 467999999999999999999998865
Q ss_pred --CeEEEecccccC------CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceE
Q 002357 145 --DVGLMTGDVTLS------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKM 216 (931)
Q Consensus 145 --~vg~~tGd~~~~------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~ 216 (931)
.++.++|+.+.. .+++|+|+||+++.+.+.++...+.++++||+||||++.++++...+..++..+++..|+
T Consensus 117 ~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~ 196 (394)
T 1fuu_A 117 DIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQV 196 (394)
T ss_dssp CCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEE
T ss_pred CeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceE
Confidence 577788876532 158999999999999988877778899999999999998888899999999999999999
Q ss_pred EEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCc--ceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCC
Q 002357 217 VFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTP--LQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGG 294 (931)
Q Consensus 217 v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~p--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 294 (931)
+++|||+++.. .+++......+..+........+ +.++. ......
T Consensus 197 i~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~---------------------- 243 (394)
T 1fuu_A 197 VLLSATMPNDV--LEVTTKFMRNPVRILVKKDELTLEGIKQFY---------VNVEEE---------------------- 243 (394)
T ss_dssp EEECSSCCHHH--HHHHHHHCCSCEEEEECC-------------------------------------------------
T ss_pred EEEEEecCHHH--HHHHHHhcCCCeEEEecCccccCCCceEEE---------EEcCch----------------------
Confidence 99999998653 34555554545544433211110 00000 000000
Q ss_pred CcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhc
Q 002357 295 RRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCL 374 (931)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l 374 (931)
......+...+......++||||++++.|+.++..|.+.++.
T Consensus 244 -------------------~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~------------------- 285 (394)
T 1fuu_A 244 -------------------EYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFT------------------- 285 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------hhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCe-------------------
Confidence 001111222223334568999999999999999999765433
Q ss_pred CcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcc
Q 002357 375 NEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRY 454 (931)
Q Consensus 375 ~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~ 454 (931)
+..+||++++.+|+.+++.|++|..+|||||+++++|+|+|++++|| .||. |
T Consensus 286 --------------------~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi----~~~~----p 337 (394)
T 1fuu_A 286 --------------------VSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI----NYDL----P 337 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------EEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEE----EeCC----C
Confidence 57899999999999999999999999999999999999999999999 6666 8
Q ss_pred cCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 455 IGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 455 ~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
.++.+|+||+||+||.|.+ |.+++++++.
T Consensus 338 ~s~~~~~Qr~GR~~R~g~~--g~~~~~~~~~ 366 (394)
T 1fuu_A 338 ANKENYIHRIGRGGRFGRK--GVAINFVTNE 366 (394)
T ss_dssp -------------------------------
T ss_pred CCHHHHHHHcCcccCCCCC--ceEEEEEchh
Confidence 8999999999999999975 6777777654
No 26
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.7e-41 Score=396.04 Aligned_cols=319 Identities=18% Similarity=0.236 Sum_probs=217.4
Q ss_pred cCCCC-CCHHHHHHHHHHhcC--CcEEEEcCCCCCcHHHHHHHHHHHHhC---CCEEEEEcCchhhHHHHHHHHHHhcCC
Q 002357 72 TYSFE-LDPFQRVSVACLERN--ESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYRELHQEFKD 145 (931)
Q Consensus 72 ~~~f~-l~~~Q~~ai~~l~~g--~~vlv~apTGsGKTl~~~l~i~~~l~~---~~rvl~l~P~kaL~~Q~~~~l~~~~~~ 145 (931)
..+|. |+++|.+|++.+.++ ++++++||||||||++|.++++..+.. +.++||++|+++|++|+++++++++..
T Consensus 136 ~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~ 215 (508)
T 3fho_A 136 XXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKY 215 (508)
T ss_dssp ---CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTT
T ss_pred cccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCc
Confidence 34676 999999999999887 999999999999999999999988754 458999999999999999999998762
Q ss_pred ----eEEEecccc---cCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCC-CCchHHHHHHHHhcCCCceEE
Q 002357 146 ----VGLMTGDVT---LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD-RERGVVWEESIIFLPPAIKMV 217 (931)
Q Consensus 146 ----vg~~tGd~~---~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~-~~~g~~~~~ii~~l~~~~q~v 217 (931)
+....++.. ...+++|+|+||+++.+.+.+....+.++++||+||||++.+ .++...+..+...+++..|++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i 295 (508)
T 3fho_A 216 TEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIV 295 (508)
T ss_dssp SSCCEEC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEE
T ss_pred cCeeEEEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEE
Confidence 222233322 223689999999999998888777789999999999999987 577888888888999999999
Q ss_pred EeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcC
Q 002357 218 FLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRE 297 (931)
Q Consensus 218 ~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 297 (931)
++|||+++..+ .+.......+..+..... ..+.. .....+......
T Consensus 296 ~lSAT~~~~~~--~~~~~~~~~~~~i~~~~~-~~~~~------~~~~~~~~~~~~------------------------- 341 (508)
T 3fho_A 296 LFSATFSERVE--KYAERFAPNANEIRLKTE-ELSVE------GIKQLYMDCQSE------------------------- 341 (508)
T ss_dssp EEESCCSTHHH--HHHHHHSTTCEEECCCCC-C----------CCCCEEEEC--C-------------------------
T ss_pred EEeCCCCHHHH--HHHHHhcCCCeEEEeccc-cCCcc------cceEEEEECCch-------------------------
Confidence 99999987543 333333333333322111 11000 000111111100
Q ss_pred CCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcc
Q 002357 298 NGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEE 377 (931)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~ 377 (931)
......+...+......++||||++++.|+.++..|.+.+..
T Consensus 342 ----------------~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~---------------------- 383 (508)
T 3fho_A 342 ----------------EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHT---------------------- 383 (508)
T ss_dssp ----------------HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCC----------------------
T ss_pred ----------------HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCc----------------------
Confidence 011122333333345679999999999999999999875443
Q ss_pred cCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCc--cc
Q 002357 378 DRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHR--YI 455 (931)
Q Consensus 378 d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~--~~ 455 (931)
+..|||++++.+|+.+++.|++|.++|||||+++++|+|+|++++|| .||....+ ..
T Consensus 384 -----------------v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI----~~~~p~~~~~~~ 442 (508)
T 3fho_A 384 -----------------VACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVV----NYDMPLDQAGRP 442 (508)
T ss_dssp -----------------CCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEE----C----CC-----
T ss_pred -----------------EEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEE----EECCCCcccCCC
Confidence 68999999999999999999999999999999999999999999999 56651111 16
Q ss_pred CHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 456 GSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 456 s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
++.+|+||+|||||.|.+ |.+++++.+.
T Consensus 443 s~~~~~Qr~GRagR~g~~--g~~i~l~~~~ 470 (508)
T 3fho_A 443 DPQTYLHRIGRTGRFGRV--GVSINFVHDK 470 (508)
T ss_dssp CTHHHHHTTSCCC-------CEEEEEECTT
T ss_pred CHHHHHHHhhhcCCCCCC--cEEEEEEeCh
Confidence 889999999999999975 6677777654
No 27
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=9.7e-39 Score=381.08 Aligned_cols=369 Identities=17% Similarity=0.191 Sum_probs=196.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC-----CCEEEEEcCchhhHHHHHHHHHHhcC---
Q 002357 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD-----KQRVIYTSPLKALSNQKYRELHQEFK--- 144 (931)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~-----~~rvl~l~P~kaL~~Q~~~~l~~~~~--- 144 (931)
.+|+|+|+|.++++.+..|+++++++|||+|||++|.+++...+.. +.++||++|+++|+.|+++++..+++
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 3578999999999999999999999999999999999999988865 78999999999999999999999864
Q ss_pred -CeEEEecccccCC-------CCCeeEecHHHHHHHHhcCcc-ccCcccEEEEeccccCCCCCchHHHH-HHHH-hc---
Q 002357 145 -DVGLMTGDVTLSP-------NASCLVMTTEILRGMLYRGSE-VLKEVAWVIFDEIHYMKDRERGVVWE-ESII-FL--- 210 (931)
Q Consensus 145 -~vg~~tGd~~~~~-------~~~IlV~Tpe~L~~~l~~~~~-~l~~l~~vViDEaH~l~~~~~g~~~~-~ii~-~l--- 210 (931)
.++.++|+.+... .++|+|+||++|.+++..+.. .+.++++||+||||++.+++....+. ..+. .+
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~ 163 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSA 163 (556)
T ss_dssp CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhccc
Confidence 6888999886543 489999999999999988766 68899999999999998775322221 1111 11
Q ss_pred CCCceEEEeccCCC--ChHHHHHHHHhhc------CCCeEEEecCCC--------CCcceeeeeccC-CCcee-----Ee
Q 002357 211 PPAIKMVFLSATMS--NATQFAEWICHLH------KQPCHVVYTDFR--------PTPLQHYVFPVG-GSGLY-----LV 268 (931)
Q Consensus 211 ~~~~q~v~lSAT~~--n~~e~~~~l~~~~------~~~~~v~~~~~r--------p~pl~~~~~~~~-~~~~~-----~~ 268 (931)
++..|+++||||++ +..++.+|+..+. ... .+...... +.|...+..... ....+ ..
T Consensus 164 ~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (556)
T 4a2p_A 164 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ-AISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 242 (556)
T ss_dssp --CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCS-EEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred CCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCe-EecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHH
Confidence 45689999999994 4445666654321 111 11111100 111111111000 00000 00
Q ss_pred ------------------eCccchhchhhHHHHHHH--------------------------------------------
Q 002357 269 ------------------VDEKEQFREDNFVKLQDT-------------------------------------------- 286 (931)
Q Consensus 269 ------------------~~~~~~~~~~~~~~~~~~-------------------------------------------- 286 (931)
......+....+......
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (556)
T 4a2p_A 243 MSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDAR 322 (556)
T ss_dssp HHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 000000000000000000
Q ss_pred -------HHhh----hcCCCcCC-CC----CCCC-----ccCCCCCCCCCCHHHHHHHHHH----cCCCcEEEEecCHHH
Q 002357 287 -------FLKQ----KIGGRREN-GK----ASGR-----MAKGGSGSGGSDIFKIVKMIME----RKFQPVIVFSFSRRE 341 (931)
Q Consensus 287 -------l~~~----~~~~~~~~-~~----~~~~-----~~~~~~~~~~~~~~~ll~~l~~----~~~~~~IVF~~sr~~ 341 (931)
+... ........ .. .... ...........++..+++.+.. ....++||||+++..
T Consensus 323 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~ 402 (556)
T 4a2p_A 323 IIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRAL 402 (556)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHH
Confidence 0000 00000000 00 0000 0000000123345556666543 467899999999999
Q ss_pred HHHHHHHhccC----CCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhc-
Q 002357 342 CEQHAMSMSKL----DFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQE- 416 (931)
Q Consensus 342 ~~~la~~L~~~----~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~- 416 (931)
++.++..|... ++.. ......+...+||+|++.+|..+++.|++
T Consensus 403 ~~~l~~~L~~~~~~~~~~~-------------------------------~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 451 (556)
T 4a2p_A 403 VSALKKCMEENPILNYIKP-------------------------------GVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 451 (556)
T ss_dssp HHHHHHHHTTCSGGGSCCE-------------------------------EC----------------------------
T ss_pred HHHHHHHHHhCCCcceeee-------------------------------eEEEccCCcccccccCHHHHHHHHHHhccc
Confidence 99999999764 1111 00112345678999999999999999999
Q ss_pred CCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 417 GLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 417 g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
|.++|||||+++++|||+|++++|| +||. |.++..|+||+|| ||.+ .|.+++++++.
T Consensus 452 g~~~vLvaT~~~~~GiDip~v~~VI----~~d~----p~s~~~~~Qr~GR-gR~~---~g~~~~l~~~~ 508 (556)
T 4a2p_A 452 KDNRLLIATSVADEGIDIVQCNLVV----LYEY----SGNVTKMIQVRGR-GRAA---GSKCILVTSKT 508 (556)
T ss_dssp --CCEEEEEC-----------CEEE----EETC----CSCHHHHHHC------------CCEEEEESCH
T ss_pred CceEEEEEcCchhcCCCchhCCEEE----EeCC----CCCHHHHHHhcCC-CCCC---CceEEEEEeCc
Confidence 9999999999999999999999999 7888 9999999999999 9983 48888888765
No 28
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=3.3e-38 Score=397.25 Aligned_cols=316 Identities=17% Similarity=0.190 Sum_probs=236.2
Q ss_pred hhhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC---
Q 002357 68 EMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK--- 144 (931)
Q Consensus 68 ~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~--- 144 (931)
.+...++|+|+|+|.++++.+.+|++++++||||||||++|+.++...+..+.++||++||++|++|+++.++++..
T Consensus 70 ~~~~~~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i 149 (1104)
T 4ddu_A 70 FFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKV 149 (1104)
T ss_dssp HHHHHSSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTS
T ss_pred HHHHhcCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCC
Confidence 44567899999999999999999999999999999999999999888888999999999999999999999999542
Q ss_pred CeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCC-----------CCchHH
Q 002357 145 DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD-----------RERGVV 202 (931)
Q Consensus 145 ~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~-----------~~~g~~ 202 (931)
.++.++|+.+. +..++|+|+||++|.+++.. ..+.++++||+||||++.+ .++...
T Consensus 150 ~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~ 227 (1104)
T 4ddu_A 150 KIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEE 227 (1104)
T ss_dssp CEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHH
T ss_pred eEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCHH
Confidence 78999998875 23589999999999887764 4577999999999998775 445555
Q ss_pred -HHHHHHhcC-----------CCceEEEeccCC-CChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEee
Q 002357 203 -WEESIIFLP-----------PAIKMVFLSATM-SNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVV 269 (931)
Q Consensus 203 -~~~ii~~l~-----------~~~q~v~lSAT~-~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~ 269 (931)
+..++..++ ...|++++|||+ |.... ..++..... +.+......+..+.+.... .
T Consensus 228 ~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~-~~~~~~~l~--i~v~~~~~~~~~i~~~~~~---------~ 295 (1104)
T 4ddu_A 228 IIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIR-PLLFRDLLN--FTVGRLVSVARNITHVRIS---------S 295 (1104)
T ss_dssp HHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSST-THHHHHHTC--CCCCBCCCCCCCEEEEEES---------C
T ss_pred HHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHH-HHHhhccee--EEeccCCCCcCCceeEEEe---------c
Confidence 677777777 889999999994 43321 122222211 1111111111122222111 0
Q ss_pred CccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHh
Q 002357 270 DEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSM 349 (931)
Q Consensus 270 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L 349 (931)
.+...+...+.. .+.++||||++++.|+.++..|
T Consensus 296 ---------------------------------------------~k~~~L~~ll~~-~~~~~LVF~~s~~~a~~l~~~L 329 (1104)
T 4ddu_A 296 ---------------------------------------------RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYL 329 (1104)
T ss_dssp ---------------------------------------------CCHHHHHHHHHH-HCSSEEEEESSSHHHHHHHHHH
T ss_pred ---------------------------------------------CHHHHHHHHHHh-cCCCEEEEECcHHHHHHHHHHH
Confidence 112233444443 3378999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccce-eccCCCCHHHHHHHHHHHhcCCceEEEe----
Q 002357 350 SKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIA-VHHSGLLPVIKELVELLFQEGLVKALFA---- 424 (931)
Q Consensus 350 ~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~-~~hg~l~~~~R~~v~~~F~~g~i~vLva---- 424 (931)
...++. +. .+|| .|+. ++.|++|.++||||
T Consensus 330 ~~~g~~---------------------------------------~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~ 364 (1104)
T 4ddu_A 330 KRFKFN---------------------------------------VGETWSE-----FEKN-FEDFKVGKINILIGVQAY 364 (1104)
T ss_dssp HHTTCC---------------------------------------EEESSSS-----HHHH-HHHHHHTSCSEEEEETTT
T ss_pred HhCCCC---------------------------------------eeeEecC-----cHHH-HHHHHCCCCCEEEEecCC
Confidence 876654 45 7888 2555 99999999999999
Q ss_pred cchhhcccCCCC-cEEEEecceecCCCCCc--------------------------------------------------
Q 002357 425 TETFAMGLNMPA-KTVVFTAVKKWDGDSHR-------------------------------------------------- 453 (931)
Q Consensus 425 T~~la~GIdip~-~~vVI~~~~~~d~~~~~-------------------------------------------------- 453 (931)
|+++++|||+|+ +++|| +||...++
T Consensus 365 TdvlarGIDip~~V~~VI----~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~ 440 (1104)
T 4ddu_A 365 YGKLTRGVDLPERIKYVI----FWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEK 440 (1104)
T ss_dssp HHHHCCSCCCTTTCCEEE----EESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_pred CCeeEecCcCCCCCCEEE----EECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999 99999 66663200
Q ss_pred ------------------ccCHHHHHHhhhccCCCC--CCCceEEEEEeCCccCHHHHH
Q 002357 454 ------------------YIGSGEYIQMSGRAGRRG--KDDRGICIIMVDEQMEMNTLK 492 (931)
Q Consensus 454 ------------------~~s~~~y~Qr~GRaGR~G--~~~~g~~ii~~~~~~~~~~l~ 492 (931)
..++.+|+||+|||||.| ..++|.+|+++++......++
T Consensus 441 i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~ 499 (1104)
T 4ddu_A 441 VKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLK 499 (1104)
T ss_dssp HHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHH
T ss_pred HhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHH
Confidence 017789999999999954 445799999997653333333
No 29
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.2e-37 Score=371.48 Aligned_cols=369 Identities=15% Similarity=0.188 Sum_probs=216.3
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC-----CCEEEEEcCchhhHHHHHHHHHHhcC----
Q 002357 74 SFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD-----KQRVIYTSPLKALSNQKYRELHQEFK---- 144 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~-----~~rvl~l~P~kaL~~Q~~~~l~~~~~---- 144 (931)
+|+|+|+|.++++.+..|+++++++|||+|||++|.+++...+.. +.++||++|+++|+.|+++++.++++
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 578999999999999999999999999999999999999988865 78999999999999999999999864
Q ss_pred CeEEEecccccCC-------CCCeeEecHHHHHHHHhcCcc-ccCcccEEEEeccccCCCCCchHHHHHHHH----h-c-
Q 002357 145 DVGLMTGDVTLSP-------NASCLVMTTEILRGMLYRGSE-VLKEVAWVIFDEIHYMKDRERGVVWEESII----F-L- 210 (931)
Q Consensus 145 ~vg~~tGd~~~~~-------~~~IlV~Tpe~L~~~l~~~~~-~l~~l~~vViDEaH~l~~~~~g~~~~~ii~----~-l- 210 (931)
.++.++|+.+... +++|+|+||++|.+++..+.. .+.++++||+||||++.+.+. +..++. . +
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~---~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP---YNQIMFRYLDHKLG 158 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH---HHHHHHHHHHHHTS
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch---HHHHHHHHHHhhhc
Confidence 6888999987654 389999999999999987766 688999999999999987642 333221 1 1
Q ss_pred ---CCCceEEEeccCCCChH--HHHHHHH------hhcCCCeEEEec--------CCCCCcceeeeeccCCC-ce-eE--
Q 002357 211 ---PPAIKMVFLSATMSNAT--QFAEWIC------HLHKQPCHVVYT--------DFRPTPLQHYVFPVGGS-GL-YL-- 267 (931)
Q Consensus 211 ---~~~~q~v~lSAT~~n~~--e~~~~l~------~~~~~~~~v~~~--------~~rp~pl~~~~~~~~~~-~~-~~-- 267 (931)
.+..|+++||||+++.. ++.+++. ...... .+... .+...|...+....... .. ..
T Consensus 159 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDAS-VIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCII 237 (555)
T ss_dssp SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCS-EEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHH
T ss_pred cccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCe-eeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHH
Confidence 25689999999996432 2222211 111111 11111 11112221111110000 00 00
Q ss_pred ---------e----e--------CccchhchhhHHHHHHH----------------------------------------
Q 002357 268 ---------V----V--------DEKEQFREDNFVKLQDT---------------------------------------- 286 (931)
Q Consensus 268 ---------~----~--------~~~~~~~~~~~~~~~~~---------------------------------------- 286 (931)
. . .....+....+......
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 317 (555)
T 3tbk_A 238 SQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIIS 317 (555)
T ss_dssp HHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 0 00000000000000000
Q ss_pred -----------HHhhhcCCCcCCCCC---------CCCc-----cCCCCCCCCCCHHHHHHHHHH----cCCCcEEEEec
Q 002357 287 -----------FLKQKIGGRRENGKA---------SGRM-----AKGGSGSGGSDIFKIVKMIME----RKFQPVIVFSF 337 (931)
Q Consensus 287 -----------l~~~~~~~~~~~~~~---------~~~~-----~~~~~~~~~~~~~~ll~~l~~----~~~~~~IVF~~ 337 (931)
+.............. .... ..........++..+.+.+.. ....++||||+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~ 397 (555)
T 3tbk_A 318 EDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVK 397 (555)
T ss_dssp HHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred hhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeC
Confidence 000000000000000 0000 000000112344555555543 35689999999
Q ss_pred CHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhc-
Q 002357 338 SRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQE- 416 (931)
Q Consensus 338 sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~- 416 (931)
++..++.++..|...+.... +.. ..+...+...+||+|++.+|..+++.|++
T Consensus 398 ~~~~~~~l~~~L~~~~~~~~----------------~~~-----------~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 450 (555)
T 3tbk_A 398 TRALVDALKKWIEENPALSF----------------LKP-----------GILTGRGRTNRATGMTLPAQKCVLEAFRAS 450 (555)
T ss_dssp SHHHHHHHHHHHHHCGGGTT----------------CCE-----------EECCC-------------------------
T ss_pred cHHHHHHHHHHHhhCcCcCc----------------eee-----------eEEEecCCcccccccCHHHHHHHHHHHhcC
Confidence 99999999999976532100 000 00011245677899999999999999999
Q ss_pred CCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 417 GLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 417 g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
|.++|||||+++++|||+|++++|| +||. |.++..|+||+|| ||. . .|.+++++++.
T Consensus 451 g~~~vLvaT~~~~~GlDlp~v~~VI----~~d~----p~s~~~~~Qr~GR-gR~-~--~g~~~~l~~~~ 507 (555)
T 3tbk_A 451 GDNNILIATSVADEGIDIAECNLVI----LYEY----VGNVIKMIQTRGR-GRA-R--DSKCFLLTSSA 507 (555)
T ss_dssp -CCSEEEECCCTTCCEETTSCSEEE----EESC----CSSCCCEECSSCC-CTT-T--SCEEEEEESCH
T ss_pred CCeeEEEEcchhhcCCccccCCEEE----EeCC----CCCHHHHHHhcCc-CcC-C--CceEEEEEcCC
Confidence 9999999999999999999999999 7887 8899999999999 887 3 48888888765
No 30
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9e-37 Score=356.92 Aligned_cols=357 Identities=20% Similarity=0.222 Sum_probs=244.4
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh-CCCEEEEEcCchhhHHHHHHHHHHhcC----CeEE
Q 002357 74 SFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQEFK----DVGL 148 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~-~~~rvl~l~P~kaL~~Q~~~~l~~~~~----~vg~ 148 (931)
+|+|+|+|.++++.+.++ ++++++|||+|||+++..++...+. .+.++||++|+++|++|+++++.++++ .++.
T Consensus 7 ~~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CCCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 468999999999999888 9999999999999999998887764 688999999999999999999999975 6888
Q ss_pred EecccccC------CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccC
Q 002357 149 MTGDVTLS------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSAT 222 (931)
Q Consensus 149 ~tGd~~~~------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT 222 (931)
++|+.... ..++|+|+||+.+.+.+.++...+.++++||+||||++.+......+...+....+..++++||||
T Consensus 86 ~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaT 165 (494)
T 1wp9_A 86 LTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTAS 165 (494)
T ss_dssp ECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESC
T ss_pred eeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecC
Confidence 99887542 268999999999999888777778899999999999998654444444555556778999999999
Q ss_pred CCCh-HHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhc--hhhHHHH----HHHHHhhhcCCC
Q 002357 223 MSNA-TQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFR--EDNFVKL----QDTFLKQKIGGR 295 (931)
Q Consensus 223 ~~n~-~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~l~~~~~~~~ 295 (931)
+.+. .++.+++........... ....+. +..++.+.. ..+.......... ...+... ...+.......+
T Consensus 166 p~~~~~~~~~l~~~l~~~~~~~~-~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (494)
T 1wp9_A 166 PGSTPEKIMEVINNLGIEHIEYR-SENSPD-VRPYVKGIR--FEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLES 241 (494)
T ss_dssp SCSSHHHHHHHHHHTTCCEEEEC-CTTSTT-TGGGCCCCC--EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred CCCCcHHHHHHHHhcChheeecc-CCCcHH-HHHhcCCCc--eeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9754 456666655443222221 211111 111111000 0000000000000 0000000 000000000000
Q ss_pred cCC-------------------CCCCCCcc--------------------------------------C-----------
Q 002357 296 REN-------------------GKASGRMA--------------------------------------K----------- 307 (931)
Q Consensus 296 ~~~-------------------~~~~~~~~--------------------------------------~----------- 307 (931)
... ........ .
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (494)
T 1wp9_A 242 SSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFS 321 (494)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhh
Confidence 000 00000000 0
Q ss_pred --------------CCCCCCCCCHHHHHHHHHH----cCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHH
Q 002357 308 --------------GGSGSGGSDIFKIVKMIME----RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQN 369 (931)
Q Consensus 308 --------------~~~~~~~~~~~~ll~~l~~----~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~ 369 (931)
........++..+.+.+.. ..+.++||||+++..++.++..|...++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~-------------- 387 (494)
T 1wp9_A 322 DKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIK-------------- 387 (494)
T ss_dssp SHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCC--------------
T ss_pred hHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCC--------------
Confidence 0000122344555555554 46789999999999999999999876544
Q ss_pred HHhhcCcccCCChhHHhHHHHhhccceeccC--------CCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEE
Q 002357 370 AVDCLNEEDRNLPAIELMLPLLKRGIAVHHS--------GLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVF 441 (931)
Q Consensus 370 ~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg--------~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI 441 (931)
+..+|| +|++.+|+.+++.|++|.++|||||+++++|||+|++++||
T Consensus 388 -------------------------~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi 442 (494)
T 1wp9_A 388 -------------------------AKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVV 442 (494)
T ss_dssp -------------------------EEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEE
T ss_pred -------------------------cEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEE
Confidence 577888 99999999999999999999999999999999999999999
Q ss_pred ecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 442 TAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 442 ~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
.||. |.++..|+||+||+||.|. |.+++++.+.
T Consensus 443 ----~~d~----~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~ 475 (494)
T 1wp9_A 443 ----FYEP----VPSAIRSIQRRGRTGRHMP---GRVIILMAKG 475 (494)
T ss_dssp ----ESSC----CHHHHHHHHHHTTSCSCCC---SEEEEEEETT
T ss_pred ----EeCC----CCCHHHHHHHHhhccCCCC---ceEEEEEecC
Confidence 7777 8899999999999999997 7888877665
No 31
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=6.4e-37 Score=379.26 Aligned_cols=364 Identities=17% Similarity=0.200 Sum_probs=199.0
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC-----CCEEEEEcCchhhHHHHHHHHHHhcC----C
Q 002357 75 FELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD-----KQRVIYTSPLKALSNQKYRELHQEFK----D 145 (931)
Q Consensus 75 f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~-----~~rvl~l~P~kaL~~Q~~~~l~~~~~----~ 145 (931)
++|+|+|.++++.+..|+++++++|||+|||++|.+++...+.. +.++||++|+++|+.|++++|+++++ .
T Consensus 247 ~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 326 (797)
T 4a2q_A 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326 (797)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCce
Confidence 35999999999999999999999999999999999999988865 78999999999999999999999874 7
Q ss_pred eEEEecccccCC-------CCCeeEecHHHHHHHHhcCcc-ccCcccEEEEeccccCCCCCchHHHHHHHHh--------
Q 002357 146 VGLMTGDVTLSP-------NASCLVMTTEILRGMLYRGSE-VLKEVAWVIFDEIHYMKDRERGVVWEESIIF-------- 209 (931)
Q Consensus 146 vg~~tGd~~~~~-------~~~IlV~Tpe~L~~~l~~~~~-~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~-------- 209 (931)
++.++|+.+.+. +++|+|+||++|.+++.++.. .+.++++||+||||++.+... +..++..
T Consensus 327 v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~---~~~i~~~~~~~~~~~ 403 (797)
T 4a2q_A 327 VQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNVLMTRYLEQKFNS 403 (797)
T ss_dssp EEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH---HHHHHHHHHHHHHTT
T ss_pred EEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc---HHHHHHHHHHHhhcc
Confidence 888999886543 689999999999999987766 688999999999999987543 3333221
Q ss_pred cCCCceEEEeccCCCC--hHHHHHHHH------hhcCCCeEEEecCCC--------CCcceeeeeccCCC-c--------
Q 002357 210 LPPAIKMVFLSATMSN--ATQFAEWIC------HLHKQPCHVVYTDFR--------PTPLQHYVFPVGGS-G-------- 264 (931)
Q Consensus 210 l~~~~q~v~lSAT~~n--~~e~~~~l~------~~~~~~~~v~~~~~r--------p~pl~~~~~~~~~~-~-------- 264 (931)
..+..|+++||||++. ..++.+++. ...... .+...... ..|...+....... .
T Consensus 404 ~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~-~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (797)
T 4a2q_A 404 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ-AISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 482 (797)
T ss_dssp CCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS-EEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHH
T ss_pred CCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCc-EEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHH
Confidence 1456899999999953 222222111 111111 11111100 11111111000000 0
Q ss_pred -----------eeE---ee-CccchhchhhHHHHH---------------------------------------------
Q 002357 265 -----------LYL---VV-DEKEQFREDNFVKLQ--------------------------------------------- 284 (931)
Q Consensus 265 -----------~~~---~~-~~~~~~~~~~~~~~~--------------------------------------------- 284 (931)
.+. +. .....+....+....
T Consensus 483 l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 562 (797)
T 4a2q_A 483 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 562 (797)
T ss_dssp HHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 000 00 000000000000000
Q ss_pred ------HHHHhh----hcCCCcCC--------CCCCC--CccCCCCCCCCCCHHHHHHHHHH----cCCCcEEEEecCHH
Q 002357 285 ------DTFLKQ----KIGGRREN--------GKASG--RMAKGGSGSGGSDIFKIVKMIME----RKFQPVIVFSFSRR 340 (931)
Q Consensus 285 ------~~l~~~----~~~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~ll~~l~~----~~~~~~IVF~~sr~ 340 (931)
..+... ........ ..... ............++..+++.+.. ....++||||++++
T Consensus 563 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~ 642 (797)
T 4a2q_A 563 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 642 (797)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHH
T ss_pred cHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHH
Confidence 000000 00000000 00000 00000001123455566666654 56689999999999
Q ss_pred HHHHHHHHhccCC----CCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhc
Q 002357 341 ECEQHAMSMSKLD----FNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQE 416 (931)
Q Consensus 341 ~~~~la~~L~~~~----~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~ 416 (931)
.++.++..|.... +... .....+...+||+|++.+|..+++.|++
T Consensus 643 ~~~~L~~~L~~~~~~~~~~~~-------------------------------~l~G~~~~~~hg~~~~~eR~~~l~~F~~ 691 (797)
T 4a2q_A 643 LVSALKKCMEENPILNYIKPG-------------------------------VLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (797)
T ss_dssp HHHHHHHHHHTCSTTCSCCCE-------------------------------EC--------------------------
T ss_pred HHHHHHHHHHhCcccccccce-------------------------------EEEecCCcccCCCCCHHHHHHHHHHhhc
Confidence 9999999997631 1110 0112345678999999999999999999
Q ss_pred -CCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 417 -GLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 417 -g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
|.++|||||+++++|||+|++++|| +||. |.++..|+||+|| ||.. .|.+++++++.
T Consensus 692 ~g~~~vLVaT~~~~~GIDlp~v~~VI----~yd~----p~s~~~~iQr~GR-GR~~---~g~~i~l~~~~ 749 (797)
T 4a2q_A 692 SKDNRLLIATSVADEGIDIVQCNLVV----LYEY----SGNVTKMIQVRGR-GRAA---GSKCILVTSKT 749 (797)
T ss_dssp --CCSEEEEECC-------CCCSEEE----EESC----CSCHHHHHTC-----------CCCEEEEECCH
T ss_pred cCCceEEEEcCchhcCCCchhCCEEE----EeCC----CCCHHHHHHhcCC-CCCC---CceEEEEEeCC
Confidence 9999999999999999999999999 7888 9999999999999 9983 47888888765
No 32
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=4.4e-37 Score=376.86 Aligned_cols=371 Identities=16% Similarity=0.187 Sum_probs=202.6
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCC-----CEEEEEcCchhhHHHHHHHHHHhc
Q 002357 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK-----QRVIYTSPLKALSNQKYRELHQEF 143 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~-----~rvl~l~P~kaL~~Q~~~~l~~~~ 143 (931)
...++|. |+|+|.++++.+..|+++++++|||+|||++|.+++...+..+ .++||++||++|+.|+++++++++
T Consensus 6 l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~ 85 (696)
T 2ykg_A 6 TNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYF 85 (696)
T ss_dssp -CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred ccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 3456765 9999999999999999999999999999999999998876432 789999999999999999999997
Q ss_pred C----CeEEEecccccC-------CCCCeeEecHHHHHHHHhcCcc-ccCcccEEEEeccccCCCCCchHHHH-HHHHh-
Q 002357 144 K----DVGLMTGDVTLS-------PNASCLVMTTEILRGMLYRGSE-VLKEVAWVIFDEIHYMKDRERGVVWE-ESIIF- 209 (931)
Q Consensus 144 ~----~vg~~tGd~~~~-------~~~~IlV~Tpe~L~~~l~~~~~-~l~~l~~vViDEaH~l~~~~~g~~~~-~ii~~- 209 (931)
+ .++.++|+.... ..++|+|+||++|.+.+..+.. .+.++++|||||||++.+......+. ..+..
T Consensus 86 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~ 165 (696)
T 2ykg_A 86 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQK 165 (696)
T ss_dssp TTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHHh
Confidence 4 688899987653 3689999999999999987765 68899999999999998654221111 11111
Q ss_pred ----cCCCceEEEeccCCCCh-----HHHHHHHH-hhcCCCeEEEecCCCCC-cceeeeeccCCCceeEeeCccc-hhch
Q 002357 210 ----LPPAIKMVFLSATMSNA-----TQFAEWIC-HLHKQPCHVVYTDFRPT-PLQHYVFPVGGSGLYLVVDEKE-QFRE 277 (931)
Q Consensus 210 ----l~~~~q~v~lSAT~~n~-----~e~~~~l~-~~~~~~~~v~~~~~rp~-pl~~~~~~~~~~~~~~~~~~~~-~~~~ 277 (931)
.++..++++||||+.+. .+..+++. ....-...++.+..... .+..+++.. ...+....... ....
T Consensus 166 ~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p--~~~~~~~~~~~~~~fs 243 (696)
T 2ykg_A 166 LGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKP--QKFFRKVESRISDKFK 243 (696)
T ss_dssp HTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCC--EEEEEECCCCSCCHHH
T ss_pred hcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCC--ceeEEecCcccCChHH
Confidence 24678999999999731 22222221 11111111222111100 000110000 00000000000 0000
Q ss_pred hhHH---HHHHHHHhhhcCCCcCC--------------------------------------------------------
Q 002357 278 DNFV---KLQDTFLKQKIGGRREN-------------------------------------------------------- 298 (931)
Q Consensus 278 ~~~~---~~~~~l~~~~~~~~~~~-------------------------------------------------------- 298 (931)
..+. .....+...........
T Consensus 244 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 323 (696)
T 2ykg_A 244 YIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDAL 323 (696)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHH
Confidence 0000 00000000000000000
Q ss_pred -----------------------CCCCCCc----c-------------CCCCCCCCCCHHHHHHHHHHc----CCCcEEE
Q 002357 299 -----------------------GKASGRM----A-------------KGGSGSGGSDIFKIVKMIMER----KFQPVIV 334 (931)
Q Consensus 299 -----------------------~~~~~~~----~-------------~~~~~~~~~~~~~ll~~l~~~----~~~~~IV 334 (931)
....... . .........++..+...+... ...++||
T Consensus 324 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~II 403 (696)
T 2ykg_A 324 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 403 (696)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred hccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEE
Confidence 0000000 0 000001233455555655544 5678999
Q ss_pred EecCHHHHHHHHHHhccCC----CCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHH
Q 002357 335 FSFSRRECEQHAMSMSKLD----FNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELV 410 (931)
Q Consensus 335 F~~sr~~~~~la~~L~~~~----~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v 410 (931)
||+++..|+.++..|...+ +... .+...|...+||+|++.+|+.+
T Consensus 404 F~~~~~~~~~l~~~L~~~~~~~~~~~~-------------------------------~l~G~~~~~~h~~~~~~eR~~v 452 (696)
T 2ykg_A 404 FVKTRALVDALKNWIEGNPKLSFLKPG-------------------------------ILTGRGKTNQNTGMTLPAQKCI 452 (696)
T ss_dssp ECSCHHHHHHHHHHHHHCTTCCSCCEE-------------------------------C---------------------
T ss_pred EeCcHHHHHHHHHHHHhCCCcccccee-------------------------------EEEccCCCccccCCCHHHHHHH
Confidence 9999999999999998755 2210 0111234455889999999999
Q ss_pred HHHHhc-CCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 411 ELLFQE-GLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 411 ~~~F~~-g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
++.|++ |.++|||||+++++|||+|++++|| +||. |.++..|+||+|| ||.+ .|.+++++++.
T Consensus 453 ~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI----~~d~----p~s~~~~~Qr~GR-GR~~---~g~~~~l~~~~ 516 (696)
T 2ykg_A 453 LDAFKASGDHNILIATSVADEGIDIAQCNLVI----LYEY----VGNVIKMIQTRGR-GRAR---GSKCFLLTSNA 516 (696)
T ss_dssp --------CCSCSEEEESSCCC---CCCSEEE----EESC----C--CCCC----------C---CCEEEEEESCH
T ss_pred HHHHHhcCCccEEEEechhhcCCcCccCCEEE----EeCC----CCCHHHHHHhhcc-CcCC---CceEEEEecCC
Confidence 999998 9999999999999999999999999 7888 8889999999999 9973 48888888764
No 33
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=5.3e-37 Score=376.31 Aligned_cols=368 Identities=15% Similarity=0.175 Sum_probs=223.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCC------CEEEEEcCchhhHHHH-HHHHHHhcC-
Q 002357 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK------QRVIYTSPLKALSNQK-YRELHQEFK- 144 (931)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~------~rvl~l~P~kaL~~Q~-~~~l~~~~~- 144 (931)
-+|+|+|+|.++++.+.+|+++++++|||+|||++|.+++...+..+ .++||++|+++|+.|+ +++|+++++
T Consensus 4 ~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 4 AMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp ---CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 35789999999999999999999999999999999999998876432 8999999999999999 999999986
Q ss_pred --CeEEEecccccC-------CCCCeeEecHHHHHHHHh------cCccccCcccEEEEeccccCCCCCc-hHHHHHHHH
Q 002357 145 --DVGLMTGDVTLS-------PNASCLVMTTEILRGMLY------RGSEVLKEVAWVIFDEIHYMKDRER-GVVWEESII 208 (931)
Q Consensus 145 --~vg~~tGd~~~~-------~~~~IlV~Tpe~L~~~l~------~~~~~l~~l~~vViDEaH~l~~~~~-g~~~~~ii~ 208 (931)
.++.++|+.... ..++|+|+||++|.+.+. .....+.++++||+||||++..... .......+.
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 163 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHH
Confidence 789999998765 368999999999998883 3345678999999999999865332 222222222
Q ss_pred h----c---------CCCceEEEeccCCCCh---------HHHHHHHHhhcCCCeEEEecC------CCCCcceeeeecc
Q 002357 209 F----L---------PPAIKMVFLSATMSNA---------TQFAEWICHLHKQPCHVVYTD------FRPTPLQHYVFPV 260 (931)
Q Consensus 209 ~----l---------~~~~q~v~lSAT~~n~---------~e~~~~l~~~~~~~~~v~~~~------~rp~pl~~~~~~~ 260 (931)
. . .+.+++++||||+++. ..+.+.........+...... +.+.|...+.+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~ 243 (699)
T 4gl2_A 164 QKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIAD 243 (699)
T ss_dssp HHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC
T ss_pred hhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcc
Confidence 1 1 1567999999999862 123333333222111111000 0011212111110
Q ss_pred CCCc-e--------------eEeeCccchhchhhHHH-------------------------------------------
Q 002357 261 GGSG-L--------------YLVVDEKEQFREDNFVK------------------------------------------- 282 (931)
Q Consensus 261 ~~~~-~--------------~~~~~~~~~~~~~~~~~------------------------------------------- 282 (931)
.... . +...+....+....+..
T Consensus 244 ~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (699)
T 4gl2_A 244 ATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAY 323 (699)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 00000000000000000
Q ss_pred -----HHHHHHhhhcCCCcCCCCCCC----------------------CccCCC-CCCCCCCHHHHHHH-HHHcC-CCcE
Q 002357 283 -----LQDTFLKQKIGGRRENGKASG----------------------RMAKGG-SGSGGSDIFKIVKM-IMERK-FQPV 332 (931)
Q Consensus 283 -----~~~~l~~~~~~~~~~~~~~~~----------------------~~~~~~-~~~~~~~~~~ll~~-l~~~~-~~~~ 332 (931)
.+................... ....+. .......+..++.. +...+ ..++
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~ 403 (699)
T 4gl2_A 324 THLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARG 403 (699)
T ss_dssp HHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCE
T ss_pred HHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcE
Confidence 000000000000000000000 000000 01223334444443 33334 6899
Q ss_pred EEEecCHHHHHHHHHHhccCC-CCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCC--------CC
Q 002357 333 IVFSFSRRECEQHAMSMSKLD-FNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSG--------LL 403 (931)
Q Consensus 333 IVF~~sr~~~~~la~~L~~~~-~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~--------l~ 403 (931)
||||++++.++.++..|.... +.. ....+..+||+ |+
T Consensus 404 IVF~~s~~~~~~l~~~L~~~~~l~~----------------------------------~g~~~~~lhg~~~~~~~~~~~ 449 (699)
T 4gl2_A 404 IIFTKTRQSAYALSQWITENEKFAE----------------------------------VGVKAHHLIGAGHSSEFKPMT 449 (699)
T ss_dssp EEECSCHHHHHHHHHHHHSSCSCC---------------------------------------CEECCCSCCCTTCCCCC
T ss_pred EEEECcHHHHHHHHHHHHhCccccc----------------------------------cCcceEEEECCCCccCCCCCC
Confidence 999999999999999997641 100 00125788998 99
Q ss_pred HHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeC
Q 002357 404 PVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVD 483 (931)
Q Consensus 404 ~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~ 483 (931)
+.+|..+++.|++|.++|||||+++++|||+|++++|| +||. |.++..|+||+|||||.| .+.+++...
T Consensus 450 ~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI----~~d~----p~s~~~~~Qr~GRArr~g---~~~~l~~~~ 518 (699)
T 4gl2_A 450 QNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI----RYGL----VTNEIAMVQARGRARADE---STYVLVAHS 518 (699)
T ss_dssp HHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCE----EESC----CCCHHHHHHHHTTSCSSS---CEEEEEEES
T ss_pred HHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEE----EeCC----CCCHHHHHHHcCCCCCCC---ceEEEEEeC
Confidence 99999999999999999999999999999999999999 8888 899999999999987766 244444444
Q ss_pred Cc
Q 002357 484 EQ 485 (931)
Q Consensus 484 ~~ 485 (931)
+.
T Consensus 519 ~~ 520 (699)
T 4gl2_A 519 GS 520 (699)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 34
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=7e-36 Score=373.69 Aligned_cols=365 Identities=16% Similarity=0.185 Sum_probs=200.6
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC-----CCEEEEEcCchhhHHHHHHHHHHhcC----
Q 002357 74 SFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD-----KQRVIYTSPLKALSNQKYRELHQEFK---- 144 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~-----~~rvl~l~P~kaL~~Q~~~~l~~~~~---- 144 (931)
.++|+|+|.++++.+..|+++++++|||+|||++|.+++...+.. +.++||++|+++|+.|++++|+.+++
T Consensus 246 ~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (936)
T 4a2w_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (936)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 456999999999999999999999999999999999999888755 78999999999999999999999864
Q ss_pred CeEEEecccccCC-------CCCeeEecHHHHHHHHhcCcc-ccCcccEEEEeccccCCCCCchHHHHHHHHhc------
Q 002357 145 DVGLMTGDVTLSP-------NASCLVMTTEILRGMLYRGSE-VLKEVAWVIFDEIHYMKDRERGVVWEESIIFL------ 210 (931)
Q Consensus 145 ~vg~~tGd~~~~~-------~~~IlV~Tpe~L~~~l~~~~~-~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l------ 210 (931)
.++.++|+.+... .++|+|+||++|.+++.++.. .+.++++||+||||++.+.+. +..++..+
T Consensus 326 ~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~---~~~i~~~~~~~~~~ 402 (936)
T 4a2w_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNVLMTRYLEQKFN 402 (936)
T ss_dssp CEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH---HHHHHHHHHHHHHT
T ss_pred eEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc---HHHHHHHHHHHhhc
Confidence 6888999886543 579999999999999887665 688999999999999987542 33332211
Q ss_pred --CCCceEEEeccCCCC--hHHHHHHHHh------hcCCCeEEEecCC--------CCCcceeeeeccCC-Cc-------
Q 002357 211 --PPAIKMVFLSATMSN--ATQFAEWICH------LHKQPCHVVYTDF--------RPTPLQHYVFPVGG-SG------- 264 (931)
Q Consensus 211 --~~~~q~v~lSAT~~n--~~e~~~~l~~------~~~~~~~v~~~~~--------rp~pl~~~~~~~~~-~~------- 264 (931)
.+..|+++||||++. ..++.+++.. ..... .+..... -+.|...+...... ..
T Consensus 403 ~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~-~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~ 481 (936)
T 4a2w_A 403 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ-AISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (936)
T ss_dssp TCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS-EEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHH
T ss_pred cCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCc-eeecccccHHHHHHhccCCcceEEecccccCcHHHHHHH
Confidence 456899999999952 2222222211 11111 1111000 01111111110000 00
Q ss_pred ------------eeE---e-eCccchhchhhHHHH---------------------------------------------
Q 002357 265 ------------LYL---V-VDEKEQFREDNFVKL--------------------------------------------- 283 (931)
Q Consensus 265 ------------~~~---~-~~~~~~~~~~~~~~~--------------------------------------------- 283 (931)
... + ......+....+...
T Consensus 482 ~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~ 561 (936)
T 4a2w_A 482 NLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (936)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 000 0 000000000000000
Q ss_pred ------HHHHHhhhcCCCcCCCC-CCC-------------CccCCCCCCCCCCHHHHHHHHHH----cCCCcEEEEecCH
Q 002357 284 ------QDTFLKQKIGGRRENGK-ASG-------------RMAKGGSGSGGSDIFKIVKMIME----RKFQPVIVFSFSR 339 (931)
Q Consensus 284 ------~~~l~~~~~~~~~~~~~-~~~-------------~~~~~~~~~~~~~~~~ll~~l~~----~~~~~~IVF~~sr 339 (931)
...+............. ... ............++..+.+.+.+ ..+.++||||+++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~ 641 (936)
T 4a2w_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (936)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCH
Confidence 00000000000000000 000 00000001124456677777765 3568999999999
Q ss_pred HHHHHHHHHhccC----CCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHh
Q 002357 340 RECEQHAMSMSKL----DFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQ 415 (931)
Q Consensus 340 ~~~~~la~~L~~~----~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~ 415 (931)
+.++.++..|... ++... .+...+...+||+|++.+|..+++.|+
T Consensus 642 ~~ae~L~~~L~~~~~l~~ik~~-------------------------------~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 642 ALVSALKKCMEENPILNYIKPG-------------------------------VLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp HHHHHHHHHHHHCSTTSSCCCE-------------------------------EC-------------------------
T ss_pred HHHHHHHHHHhhCcccccccee-------------------------------EEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 9999999999764 22110 011223566799999999999999999
Q ss_pred c-CCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 416 E-GLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 416 ~-g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
+ |.++|||||+++++|||+|++++|| +||. |.++..|+||+|| ||.+ .|.++++++..
T Consensus 691 ~~g~~~VLVaT~~~~eGIDlp~v~~VI----~yD~----p~s~~~~iQr~GR-GR~~---~g~vi~Li~~~ 749 (936)
T 4a2w_A 691 TSKDNRLLIATSVADEGIDIVQCNLVV----LYEY----SGNVTKMIQVRGR-GRAA---GSKCILVTSKT 749 (936)
T ss_dssp ---CCSEEEEECC------CCCCSEEE----EESC----CSCSHHHHCC-----------CCCEEEEESCH
T ss_pred ccCCeeEEEEeCchhcCCcchhCCEEE----EeCC----CCCHHHHHHhcCC-CCCC---CCEEEEEEeCC
Confidence 9 9999999999999999999999999 7888 8999999999999 9984 37788888765
No 35
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.4e-36 Score=382.87 Aligned_cols=316 Identities=16% Similarity=0.183 Sum_probs=225.8
Q ss_pred CchhhhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHH-HhCCCEEEEEcCchhhHHHHHHHHHHhc
Q 002357 65 YNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPLKALSNQKYRELHQEF 143 (931)
Q Consensus 65 ~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~-l~~~~rvl~l~P~kaL~~Q~~~~l~~~~ 143 (931)
+...+...++|+| ++|.++++.+.+|+|++++||||||||+ |.++++.. ...+.++||++||++|+.|+++.++.++
T Consensus 46 ~~~~~~~~~g~~p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~ 123 (1054)
T 1gku_B 46 FVEFFRKCVGEPR-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYA 123 (1054)
T ss_dssp HHHHHHTTTCSCC-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHH
Confidence 3345667789999 9999999999999999999999999998 66665554 4678899999999999999999999887
Q ss_pred C--------CeEEEecccccCC---------CCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHH
Q 002357 144 K--------DVGLMTGDVTLSP---------NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES 206 (931)
Q Consensus 144 ~--------~vg~~tGd~~~~~---------~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~i 206 (931)
. .++.++|+.+... .++|+|+||++|.+++.+ ++++++||+||||++.+ ++..++.+
T Consensus 124 ~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~~i 197 (1054)
T 1gku_B 124 EKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVDKL 197 (1054)
T ss_dssp TTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHHHH
T ss_pred hhcCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHHHH
Confidence 5 5678888875422 289999999999987765 67999999999999998 47888888
Q ss_pred HHhc-----------CCCceEEEeccCCCChHHHHHHHHh-hcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccch
Q 002357 207 IIFL-----------PPAIKMVFLSATMSNATQFAEWICH-LHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQ 274 (931)
Q Consensus 207 i~~l-----------~~~~q~v~lSAT~~n~~e~~~~l~~-~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~ 274 (931)
+..+ +...|++++|||+++..++..++.. ... +.+.........+.++.. + .
T Consensus 198 ~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~--i~v~~~~~~~~~i~~~~~-----------~-~-- 261 (1054)
T 1gku_B 198 LHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN--FDIGSSRITVRNVEDVAV-----------N-D-- 261 (1054)
T ss_dssp HHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC--CCCSCCEECCCCEEEEEE-----------S-C--
T ss_pred HHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceE--EEccCcccCcCCceEEEe-----------c-h--
Confidence 8766 3568899999999876433333322 111 000000000111111111 0 0
Q ss_pred hchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCC
Q 002357 275 FREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDF 354 (931)
Q Consensus 275 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~ 354 (931)
.....+ ...+. ..+.++||||++++.|+.++..|... +
T Consensus 262 -------------------------------------~k~~~L---~~ll~-~~~~~~LVF~~t~~~a~~l~~~L~~~-~ 299 (1054)
T 1gku_B 262 -------------------------------------ESISTL---SSILE-KLGTGGIIYARTGEEAEEIYESLKNK-F 299 (1054)
T ss_dssp -------------------------------------CCTTTT---HHHHT-TSCSCEEEEESSHHHHHHHHHTTTTS-S
T ss_pred -------------------------------------hHHHHH---HHHHh-hcCCCEEEEEcCHHHHHHHHHHHhhc-c
Confidence 001112 22222 22478999999999999999999774 3
Q ss_pred CChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEe----cchhhc
Q 002357 355 NTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFA----TETFAM 430 (931)
Q Consensus 355 ~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLva----T~~la~ 430 (931)
. +..+||++ +.+++.|++|.++|||| |+++++
T Consensus 300 ~---------------------------------------v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~r 335 (1054)
T 1gku_B 300 R---------------------------------------IGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVR 335 (1054)
T ss_dssp C---------------------------------------EEECTTSS-----SHHHHHHHHTSCSEEEEECC------C
T ss_pred C---------------------------------------eeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEe
Confidence 2 68999998 47788999999999999 999999
Q ss_pred ccCCCCc-EEEEecceecCCC-------------------------------------------------------CCc-
Q 002357 431 GLNMPAK-TVVFTAVKKWDGD-------------------------------------------------------SHR- 453 (931)
Q Consensus 431 GIdip~~-~vVI~~~~~~d~~-------------------------------------------------------~~~- 453 (931)
|||+|++ ++|| +||.. .++
T Consensus 336 GIDip~VI~~VI----~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (1054)
T 1gku_B 336 GLDLPERIRFAV----FVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQA 411 (1054)
T ss_dssp CSCCTTTCCEEE----EESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSC
T ss_pred ccccCCcccEEE----EeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 9999995 9999 45542 000
Q ss_pred -----------ccCHHHHHHhhhccCCCCCCC--ceEEEEEeCCccCHHHHHhh
Q 002357 454 -----------YIGSGEYIQMSGRAGRRGKDD--RGICIIMVDEQMEMNTLKDM 494 (931)
Q Consensus 454 -----------~~s~~~y~Qr~GRaGR~G~~~--~g~~ii~~~~~~~~~~l~~l 494 (931)
..+..+|+||+|||||.|..+ +|+++++.++......+.+.
T Consensus 412 ~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~ 465 (1054)
T 1gku_B 412 KDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIER 465 (1054)
T ss_dssp SSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHH
T ss_pred cceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHH
Confidence 058999999999999987764 58888887754333333333
No 36
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=5.1e-36 Score=350.13 Aligned_cols=341 Identities=16% Similarity=0.129 Sum_probs=231.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC-C-eEEEe
Q 002357 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-D-VGLMT 150 (931)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~-vg~~t 150 (931)
++++|+|+|.++++.+.++.++++++|||+|||++|+.++... +.++||++|+++|+.|++++|.+ |+ . +++++
T Consensus 90 ~~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~-~~~~~v~~~~ 165 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFS 165 (472)
T ss_dssp CCCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGG-GCGGGEEEBS
T ss_pred CCCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHh-CCCcceEEEC
Confidence 5778999999999999999999999999999999998888765 78999999999999999999999 55 6 99999
Q ss_pred cccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCCChHHHH
Q 002357 151 GDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFA 230 (931)
Q Consensus 151 Gd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n~~e~~ 230 (931)
|+... ..+|+|+||+.+...+.. ..+++++||+||||++.+..+.. ++..+ +..++++||||+.+.....
T Consensus 166 g~~~~--~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~l~lSATp~~~~~~~ 235 (472)
T 2fwr_A 166 GRIKE--LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLTATFEREDGRH 235 (472)
T ss_dssp SSCBC--CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEEEEEESCCCCTTSGG
T ss_pred CCcCC--cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeEEEEecCccCCCCHH
Confidence 98754 578999999998766532 12469999999999999876543 44444 4678999999998544322
Q ss_pred HHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCc---CCCCCCCCccC
Q 002357 231 EWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRR---ENGKASGRMAK 307 (931)
Q Consensus 231 ~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~ 307 (931)
.++....+..... ...... ...++.+.....+..-..... ...+......+........- ...........
T Consensus 236 ~~l~~~~~~~~~~--~~~~~l-~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 309 (472)
T 2fwr_A 236 EILKEVVGGKVFE--LFPDSL-AGKHLAKYTIKRIFVPLAEDE---RVEYEKREKVYKQFLRARGITLRRAEDFNKIVMA 309 (472)
T ss_dssp GSHHHHTCCEEEE--CCHHHH-TSCCCCSEEECCEEECCCHHH---HHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTT
T ss_pred HHHHHHhCCeEee--cCHHHH-hcCcCCCeEEEEEEcCCCHHH---HHHHHHHHHHHHHHHHhcCccccchhhHHHHHHH
Confidence 2333332211111 000000 000000000000000000000 00000011111110000000 00000000000
Q ss_pred CCC------------------CCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHH
Q 002357 308 GGS------------------GSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQN 369 (931)
Q Consensus 308 ~~~------------------~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~ 369 (931)
... .....++..+.+.+....+.++||||++++.++.++..|.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~------------------- 370 (472)
T 2fwr_A 310 SGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL------------------- 370 (472)
T ss_dssp TCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-------------------
T ss_pred hccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-------------------
Confidence 000 0112234556666666677899999999999999998873
Q ss_pred HHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCC
Q 002357 370 AVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDG 449 (931)
Q Consensus 370 ~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~ 449 (931)
+..+||++++.+|+.+++.|++|.++|||||+++++|+|+|++++|| .||+
T Consensus 371 -------------------------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi----~~~~ 421 (472)
T 2fwr_A 371 -------------------------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGV----IMSG 421 (472)
T ss_dssp -------------------------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEE----EECC
T ss_pred -------------------------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEE----EECC
Confidence 35789999999999999999999999999999999999999999999 6777
Q ss_pred CCCcccCHHHHHHhhhccCCCCCC-CceEEEEEeCCc
Q 002357 450 DSHRYIGSGEYIQMSGRAGRRGKD-DRGICIIMVDEQ 485 (931)
Q Consensus 450 ~~~~~~s~~~y~Qr~GRaGR~G~~-~~g~~ii~~~~~ 485 (931)
|.++..|+||+||+||.|.. +.+.++.++++.
T Consensus 422 ----~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 422 ----SGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp ----SSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred ----CCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 88999999999999999976 577777777655
No 37
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=7.2e-36 Score=352.40 Aligned_cols=323 Identities=13% Similarity=0.107 Sum_probs=224.2
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCC-EEEEEcCchhhHHHHHHHHHHh--cC--CeEE
Q 002357 74 SFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ-RVIYTSPLKALSNQKYRELHQE--FK--DVGL 148 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~-rvl~l~P~kaL~~Q~~~~l~~~--~~--~vg~ 148 (931)
+++|+|+|.+|++.+.+++++++++|||+|||++|..++...+..+. ++||++|+++|+.|++++|.++ ++ .++.
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~ 190 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEE
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEE
Confidence 45899999999999988899999999999999999998888775544 9999999999999999999887 43 6788
Q ss_pred EecccccC----CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCC
Q 002357 149 MTGDVTLS----PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 149 ~tGd~~~~----~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~ 224 (931)
++|+.+.. ...+|+|+||+.+.. .....+.++++||+||||++.+ ..+..++..+++..++++||||++
T Consensus 191 ~~~~~~~~~~~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lSATp~ 263 (510)
T 2oca_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGSLR 263 (510)
T ss_dssp CGGGCCTTGGGCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEESCGG
T ss_pred EecCCccccccccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEEeCCC
Confidence 88887765 679999999997643 2335578899999999999974 557778888888899999999997
Q ss_pred ChH-HHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccch--hchhhHHHHHHHHHhhhcCCCcCCCCC
Q 002357 225 NAT-QFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQ--FREDNFVKLQDTFLKQKIGGRRENGKA 301 (931)
Q Consensus 225 n~~-e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~ 301 (931)
+.. +.....+.. + +.. +........-..++.+............... .....+......+....
T Consensus 264 ~~~~~~~~~~~~~-~-~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 330 (510)
T 2oca_A 264 DGKANIMQYVGMF-G-EIF-KPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLS---------- 330 (510)
T ss_dssp GCSSCHHHHHHHH-C-SEE-CCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCH----------
T ss_pred CCcccHHHhHHhh-C-CeE-EeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccH----------
Confidence 653 212222211 1 111 1100000000001100000000111110000 00011222111111000
Q ss_pred CCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCC
Q 002357 302 SGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNL 381 (931)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l 381 (931)
.....+..++......++.++|||++ .+.|+.++..|.+.+..
T Consensus 331 ----------~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~-------------------------- 373 (510)
T 2oca_A 331 ----------KRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDK-------------------------- 373 (510)
T ss_dssp ----------HHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSS--------------------------
T ss_pred ----------HHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCC--------------------------
Confidence 00011223333333335566777777 88999999999875432
Q ss_pred hhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEec-chhhcccCCCCcEEEEecceecCCCCCcccCHHHH
Q 002357 382 PAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFAT-ETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEY 460 (931)
Q Consensus 382 ~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT-~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y 460 (931)
+..+||++++.+|+.+++.|++|.++||||| +++++|+|+|++++|| .++. |.++.+|
T Consensus 374 -------------v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi----~~~~----~~s~~~~ 432 (510)
T 2oca_A 374 -------------VYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVV----LAHG----VKSKIIV 432 (510)
T ss_dssp -------------EEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEE----ESSC----CCSCCHH
T ss_pred -------------eEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEE----EeCC----CCCHHHH
Confidence 7899999999999999999999999999999 9999999999999999 6666 7788999
Q ss_pred HHhhhccCCCCCCC
Q 002357 461 IQMSGRAGRRGKDD 474 (931)
Q Consensus 461 ~Qr~GRaGR~G~~~ 474 (931)
+||+||+||.|..+
T Consensus 433 ~Q~~GR~gR~g~~~ 446 (510)
T 2oca_A 433 LQTIGRVLRKHGSK 446 (510)
T ss_dssp HHHHHHHHTTTCCC
T ss_pred HHHHhcccccCCCC
Confidence 99999999999865
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.6e-36 Score=365.44 Aligned_cols=308 Identities=21% Similarity=0.300 Sum_probs=219.0
Q ss_pred CchhhhccCCCCCCHHHHHHHHHHhcC------CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHH
Q 002357 65 YNGEMAKTYSFELDPFQRVSVACLERN------ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRE 138 (931)
Q Consensus 65 ~~~~~~~~~~f~l~~~Q~~ai~~l~~g------~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~ 138 (931)
....+...+||+|+++|.++++.+.++ .+++++||||||||++|.++++..+..+.+++|++||++|+.|+++.
T Consensus 357 ~~~~~~~~lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~ 436 (780)
T 1gm5_A 357 LAEEFIKSLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRR 436 (780)
T ss_dssp HHHHHHHHSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHH
Confidence 445667789999999999999988654 59999999999999999999999998999999999999999999999
Q ss_pred HHHhcC----CeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHH
Q 002357 139 LHQEFK----DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVW 203 (931)
Q Consensus 139 l~~~~~----~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~ 203 (931)
+.+++. .+++++|+.+. +..++|+|+||+.+.+ ...+.++++||+||+|++....+
T Consensus 437 l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~qr---- 507 (780)
T 1gm5_A 437 TVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQR---- 507 (780)
T ss_dssp HHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC---------
T ss_pred HHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHHH----
Confidence 999875 68889998753 2368999999997754 34578999999999999754332
Q ss_pred HHHHHhcCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecC-CCCCcceeeeeccCCCceeEeeCccchhchhhHHH
Q 002357 204 EESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTD-FRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVK 282 (931)
Q Consensus 204 ~~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~-~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (931)
..+.......++++||||+.... +..... ......++... ....|+..++.+
T Consensus 508 -~~l~~~~~~~~vL~mSATp~p~t-l~~~~~--g~~~~s~i~~~p~~r~~i~~~~~~----------------------- 560 (780)
T 1gm5_A 508 -EALMNKGKMVDTLVMSATPIPRS-MALAFY--GDLDVTVIDEMPPGRKEVQTMLVP----------------------- 560 (780)
T ss_dssp -CCCCSSSSCCCEEEEESSCCCHH-HHHHHT--CCSSCEEECCCCSSCCCCEECCCC-----------------------
T ss_pred -HHHHHhCCCCCEEEEeCCCCHHH-HHHHHh--CCcceeeeeccCCCCcceEEEEec-----------------------
Confidence 22223345789999999985433 222211 11122222110 001122211110
Q ss_pred HHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHH--cCCCcEEEEecCHHHH--------HHHHHHhccC
Q 002357 283 LQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME--RKFQPVIVFSFSRREC--------EQHAMSMSKL 352 (931)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~~~IVF~~sr~~~--------~~la~~L~~~ 352 (931)
......++..+.+ ..+.+++|||++...+ +.++..|.+.
T Consensus 561 -------------------------------~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~ 609 (780)
T 1gm5_A 561 -------------------------------MDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKE 609 (780)
T ss_dssp -------------------------------SSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGS
T ss_pred -------------------------------cchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhh
Confidence 0111222333322 2456899999976553 4444444320
Q ss_pred CCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhccc
Q 002357 353 DFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGL 432 (931)
Q Consensus 353 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GI 432 (931)
.+. ..+++.+||+|++.+|+.+++.|++|.++|||||+++++||
T Consensus 610 ~~~------------------------------------~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GI 653 (780)
T 1gm5_A 610 VFP------------------------------------EFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGI 653 (780)
T ss_dssp CC---------------------------------------CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCS
T ss_pred hcC------------------------------------CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccc
Confidence 000 12489999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCC
Q 002357 433 NMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDE 484 (931)
Q Consensus 433 dip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~ 484 (931)
|+|++++|| .||.. ..+...|.||+||+||.|.. |.|++++++
T Consensus 654 DiP~v~~VI----i~d~~---r~~l~~l~Qr~GRaGR~g~~--g~~ill~~~ 696 (780)
T 1gm5_A 654 DVPRANVMV----IENPE---RFGLAQLHQLRGRVGRGGQE--AYCFLVVGD 696 (780)
T ss_dssp CCTTCCEEE----BCSCS---SSCTTHHHHHHHTSCCSSTT--CEEECCCCS
T ss_pred cCCCCCEEE----EeCCC---CCCHHHHHHHhcccCcCCCC--CEEEEEECC
Confidence 999999999 56652 13677899999999999874 889888873
No 39
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.1e-34 Score=367.72 Aligned_cols=308 Identities=19% Similarity=0.247 Sum_probs=230.1
Q ss_pred chhhhccCCCCCCHHHHHHHHHHhc----CC--cEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHH
Q 002357 66 NGEMAKTYSFELDPFQRVSVACLER----NE--SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYREL 139 (931)
Q Consensus 66 ~~~~~~~~~f~l~~~Q~~ai~~l~~----g~--~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l 139 (931)
...+...|+|+++|+|.+|++.+.+ |+ +++++||||+|||++|+.++......+.+++|++||++|++|+++.|
T Consensus 593 ~~~~~~~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~ 672 (1151)
T 2eyq_A 593 YQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNF 672 (1151)
T ss_dssp HHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHH
Confidence 3456678999999999999998855 65 99999999999999999999988889999999999999999999999
Q ss_pred HHhcC----CeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHH
Q 002357 140 HQEFK----DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWE 204 (931)
Q Consensus 140 ~~~~~----~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~ 204 (931)
.+.++ .++.++|..+. +..++|+|+||+.+. ....++++++||+||+|++ |....
T Consensus 673 ~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~~-----g~~~~ 742 (1151)
T 2eyq_A 673 RDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRF-----GVRHK 742 (1151)
T ss_dssp HHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGS-----CHHHH
T ss_pred HHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHhc-----ChHHH
Confidence 99876 57777775432 236899999998664 2345789999999999995 55667
Q ss_pred HHHHhcCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecC-CCCCcceeeeeccCCCceeEeeCccchhchhhHHHH
Q 002357 205 ESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTD-FRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKL 283 (931)
Q Consensus 205 ~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~-~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (931)
+.+..++..+++++||||+.... +...+.... ...++... ....++..++.. .. ....
T Consensus 743 ~~l~~l~~~~~vl~lSATp~p~~-l~~~~~~~~--~~~~i~~~~~~r~~i~~~~~~-----------~~----~~~i--- 801 (1151)
T 2eyq_A 743 ERIKAMRANVDILTLTATPIPRT-LNMAMSGMR--DLSIIATPPARRLAVKTFVRE-----------YD----SMVV--- 801 (1151)
T ss_dssp HHHHHHHTTSEEEEEESSCCCHH-HHHHHTTTS--EEEECCCCCCBCBCEEEEEEE-----------CC----HHHH---
T ss_pred HHHHHhcCCCCEEEEcCCCChhh-HHHHHhcCC--CceEEecCCCCccccEEEEec-----------CC----HHHH---
Confidence 77777888899999999985443 222222211 11221111 111112221110 00 0000
Q ss_pred HHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHH
Q 002357 284 QDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTV 363 (931)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i 363 (931)
...+++.+ ..+++++|||++++.|+.++..|.+...
T Consensus 802 ---------------------------------~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~p--------- 837 (1151)
T 2eyq_A 802 ---------------------------------REAILREI--LRGGQVYYLYNDVENIQKAAERLAELVP--------- 837 (1151)
T ss_dssp ---------------------------------HHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHCT---------
T ss_pred ---------------------------------HHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCC---------
Confidence 11222222 1457899999999999999999866311
Q ss_pred HHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEec
Q 002357 364 EQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA 443 (931)
Q Consensus 364 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~ 443 (931)
..+++++||+|++.+|+.+++.|++|.++|||||+++++|||+|++++||.
T Consensus 838 ----------------------------~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi- 888 (1151)
T 2eyq_A 838 ----------------------------EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII- 888 (1151)
T ss_dssp ----------------------------TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE-
T ss_pred ----------------------------CCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEE-
Confidence 124789999999999999999999999999999999999999999999883
Q ss_pred ceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 444 VKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 444 ~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
++.. +.+..+|+||+||+||.|. .|.|++++.+.
T Consensus 889 ---~~~~---~~~l~~l~Qr~GRvgR~g~--~g~~~ll~~~~ 922 (1151)
T 2eyq_A 889 ---ERAD---HFGLAQLHQLRGRVGRSHH--QAYAWLLTPHP 922 (1151)
T ss_dssp ---TTTT---SSCHHHHHHHHTTCCBTTB--CEEEEEEECCG
T ss_pred ---eCCC---CCCHHHHHHHHhccCcCCC--ceEEEEEECCc
Confidence 3331 3567889999999999987 48888888654
No 40
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=3.1e-34 Score=342.27 Aligned_cols=309 Identities=20% Similarity=0.220 Sum_probs=225.8
Q ss_pred hhccCCCCCCHHHHHHHH------------HHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHH
Q 002357 69 MAKTYSFELDPFQRVSVA------------CLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKY 136 (931)
Q Consensus 69 ~~~~~~f~l~~~Q~~ai~------------~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~ 136 (931)
....|++.-+.-|.+++. ...+|++++++||||||||+.++..+. ...+.+|++||++|+.|++
T Consensus 121 ~~~~fp~~e~~d~l~~i~dl~~p~~~~p~ar~l~rk~vlv~apTGSGKT~~al~~l~----~~~~gl~l~PtR~LA~Qi~ 196 (677)
T 3rc3_A 121 AKQIFPVLDCKDDLRKISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYF----SAKSGVYCGPLKLLAHEIF 196 (677)
T ss_dssp HHHHCGGGGCHHHHHHHTBCCCGGGGCHHHHTSCCEEEEEECCTTSSHHHHHHHHHH----HSSSEEEEESSHHHHHHHH
T ss_pred HHhhCCCcCCHHHHHHHhhccChhhhCHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH----hcCCeEEEeCHHHHHHHHH
Confidence 344566555666666652 235788999999999999994433333 2355699999999999999
Q ss_pred HHHHHhcCCeEEEecccccCC-----CCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcC
Q 002357 137 RELHQEFKDVGLMTGDVTLSP-----NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP 211 (931)
Q Consensus 137 ~~l~~~~~~vg~~tGd~~~~~-----~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~ 211 (931)
+++.+....+++++|+..... ..+++++|++.+. ....+++|||||||++.+.+||..|+.++..++
T Consensus 197 ~~l~~~g~~v~lltG~~~~iv~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~ 268 (677)
T 3rc3_A 197 EKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC 268 (677)
T ss_dssp HHHHHTTCCEEEECSSCEECCSTTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC
T ss_pred HHHHhcCCcEEEEECCeeEEecCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccC
Confidence 999998779999999976532 3788899987442 356789999999999999999999999999888
Q ss_pred -CCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhh
Q 002357 212 -PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQ 290 (931)
Q Consensus 212 -~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 290 (931)
...+++++|||.+.. .|+....+..+.+ ....++.++...... +
T Consensus 269 ~~~i~il~~SAT~~~i----~~l~~~~~~~~~v-~~~~r~~~l~~~~~~-----l------------------------- 313 (677)
T 3rc3_A 269 AEEVHLCGEPAAIDLV----MELMYTTGEEVEV-RDYKRLTPISVLDHA-----L------------------------- 313 (677)
T ss_dssp EEEEEEEECGGGHHHH----HHHHHHHTCCEEE-EECCCSSCEEECSSC-----C-------------------------
T ss_pred ccceEEEeccchHHHH----HHHHHhcCCceEE-EEeeecchHHHHHHH-----H-------------------------
Confidence 789999999996543 3443333334443 333444443210000 0
Q ss_pred hcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHH
Q 002357 291 KIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNA 370 (931)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~ 370 (931)
.. +.. .....||||+|++.|+.++..|.+.++
T Consensus 314 ------------------------~~-------l~~-~~~g~iIf~~s~~~ie~la~~L~~~g~---------------- 345 (677)
T 3rc3_A 314 ------------------------ES-------LDN-LRPGDCIVCFSKNDIYSVSRQIEIRGL---------------- 345 (677)
T ss_dssp ------------------------CS-------GGG-CCTTEEEECSSHHHHHHHHHHHHHTTC----------------
T ss_pred ------------------------HH-------HHh-cCCCCEEEEcCHHHHHHHHHHHHhcCC----------------
Confidence 00 000 123469999999999999999976543
Q ss_pred HhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhc--CCceEEEecchhhcccCCCCcEEEE-ecceec
Q 002357 371 VDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQE--GLVKALFATETFAMGLNMPAKTVVF-TAVKKW 447 (931)
Q Consensus 371 ~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~--g~i~vLvaT~~la~GIdip~~~vVI-~~~~~~ 447 (931)
++++|||+|++.+|+.+++.|++ |.++|||||+++++|||+ .+++|| .+..+|
T Consensus 346 -----------------------~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 346 -----------------------ESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP 401 (677)
T ss_dssp -----------------------CCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-
T ss_pred -----------------------CeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc
Confidence 37999999999999999999999 999999999999999999 566555 344443
Q ss_pred C--C---CCCcccCHHHHHHhhhccCCCCCCC-ceEEEEEeCCccCHHHHHhhhhcc
Q 002357 448 D--G---DSHRYIGSGEYIQMSGRAGRRGKDD-RGICIIMVDEQMEMNTLKDMVLEG 498 (931)
Q Consensus 448 d--~---~~~~~~s~~~y~Qr~GRaGR~G~~~-~g~~ii~~~~~~~~~~l~~l~~~~ 498 (931)
+ + ...+|.+..+|+||+|||||.|.++ .|.|++++.+. ...+++++...
T Consensus 402 ~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d--~~~~~~~~~~~ 456 (677)
T 3rc3_A 402 SINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHED--LSLLKEILKRP 456 (677)
T ss_dssp ----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTH--HHHHHHHHHSC
T ss_pred ccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecch--HHHHHHHHhcC
Confidence 2 1 1245899999999999999999874 58888887653 44566666654
No 41
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=2.3e-34 Score=340.76 Aligned_cols=344 Identities=16% Similarity=0.127 Sum_probs=228.0
Q ss_pred cCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC----CeE
Q 002357 72 TYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----DVG 147 (931)
Q Consensus 72 ~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~----~vg 147 (931)
.++|.|+|+|..+++.+.+|+ ++.|+||+|||++|.+|++.....+..|+|++||++||.|.++.+..++. .++
T Consensus 79 ~lG~~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~ 156 (844)
T 1tf5_A 79 VTGMFPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVG 156 (844)
T ss_dssp HHSCCCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HcCCCCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 578899999999999999998 99999999999999999985545678999999999999999988877654 788
Q ss_pred EEecccccC-----CCCCeeEecHHHH-HHHHhc------CccccCcccEEEEeccccCC-CCC---------------c
Q 002357 148 LMTGDVTLS-----PNASCLVMTTEIL-RGMLYR------GSEVLKEVAWVIFDEIHYMK-DRE---------------R 199 (931)
Q Consensus 148 ~~tGd~~~~-----~~~~IlV~Tpe~L-~~~l~~------~~~~l~~l~~vViDEaH~l~-~~~---------------~ 199 (931)
+++|+.+.. ..++|+|+||++| .++|.. +...++.+.++|+||||.|+ |.. +
T Consensus 157 ~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~ 236 (844)
T 1tf5_A 157 LNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKL 236 (844)
T ss_dssp ECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHH
T ss_pred EEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhH
Confidence 999987532 2589999999999 444422 23557899999999999987 664 3
Q ss_pred hHHHHHHHHhcC---------CCceEE-----------------EeccCCCChHHHHHHHHh-------hcCCCeEEEe-
Q 002357 200 GVVWEESIIFLP---------PAIKMV-----------------FLSATMSNATQFAEWICH-------LHKQPCHVVY- 245 (931)
Q Consensus 200 g~~~~~ii~~l~---------~~~q~v-----------------~lSAT~~n~~e~~~~l~~-------~~~~~~~v~~- 245 (931)
...+..++..++ +..|++ ++|||.+. +..|+.. +..+..+++.
T Consensus 237 ~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~---~~~~i~~al~A~~l~~~d~dYiv~d 313 (844)
T 1tf5_A 237 YVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVA---LNHHINQALKAHVAMQKDVDYVVED 313 (844)
T ss_dssp HHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHH---HHHHHHHHHHHHHTCCBTTTEEEET
T ss_pred HHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccch---hHHHHHHHHHHHHHhhcCCceEEec
Confidence 355667777886 367777 89999752 2233321 1111112211
Q ss_pred ------cC--CCC-------------------Ccc-------e-----eee--ec--cCCCceeEeeCccchhchhhHHH
Q 002357 246 ------TD--FRP-------------------TPL-------Q-----HYV--FP--VGGSGLYLVVDEKEQFREDNFVK 282 (931)
Q Consensus 246 ------~~--~rp-------------------~pl-------~-----~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~ 282 (931)
.. .|. +.+ . .|+ |+ .+..+-- ..+ ...+..
T Consensus 314 g~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa--~te-----~~e~~~ 386 (844)
T 1tf5_A 314 GQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTA--KTE-----EEEFRN 386 (844)
T ss_dssp TEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCC--GGG-----HHHHHH
T ss_pred CeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCccc--chh-----HHHHHH
Confidence 10 000 000 0 000 00 0000000 000 001111
Q ss_pred HHHHHHhhhcCCCcCCCCCCCCccCC--CCCCCCCCHHHHHHHHHH--cCCCcEEEEecCHHHHHHHHHHhccCCCCChH
Q 002357 283 LQDTFLKQKIGGRRENGKASGRMAKG--GSGSGGSDIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQE 358 (931)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~l~~--~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~ 358 (931)
.+.. ....-+. .+. ..+.... -......+...+++.+.. ..+.|+||||+|+..|+.++..|...|+.+
T Consensus 387 iY~l---~vv~IPt-n~p-~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~-- 459 (844)
T 1tf5_A 387 IYNM---QVVTIPT-NRP-VVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPH-- 459 (844)
T ss_dssp HHCC---CEEECCC-SSC-CCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCC--
T ss_pred HhCC---ceEEecC-CCC-cccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCE--
Confidence 1100 0000000 000 0000000 000112234455555543 356799999999999999999999988874
Q ss_pred HHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCC---
Q 002357 359 EKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMP--- 435 (931)
Q Consensus 359 e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip--- 435 (931)
.++||++.+.+|+.+...|+.| .|+|||++++||+|++
T Consensus 460 -------------------------------------~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~ 500 (844)
T 1tf5_A 460 -------------------------------------QVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGE 500 (844)
T ss_dssp -------------------------------------EEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCT
T ss_pred -------------------------------------EEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccc
Confidence 7899999888888777777766 6999999999999999
Q ss_pred -----CcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEE
Q 002357 436 -----AKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIM 481 (931)
Q Consensus 436 -----~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~ 481 (931)
+..+|| +||. |.+...|+||+||+||.|..|.+..|+.
T Consensus 501 ~V~~~ggl~VI----n~d~----p~s~r~y~hr~GRTGRqG~~G~s~~~vs 543 (844)
T 1tf5_A 501 GVKELGGLAVV----GTER----HESRRIDNQLRGRSGRQGDPGITQFYLS 543 (844)
T ss_dssp TSGGGTSEEEE----ESSC----CSSHHHHHHHHTTSSGGGCCEEEEEEEE
T ss_pred hhhhcCCcEEE----EecC----CCCHHHHHhhcCccccCCCCCeEEEEec
Confidence 788999 7777 8999999999999999999644444443
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=8.4e-35 Score=336.40 Aligned_cols=289 Identities=15% Similarity=0.111 Sum_probs=201.8
Q ss_pred CCHHHHHHHHHHhcCCcE-EEEcCCCCCcHHHHHHHHHHH-HhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccc-
Q 002357 77 LDPFQRVSVACLERNESV-LVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDV- 153 (931)
Q Consensus 77 l~~~Q~~ai~~l~~g~~v-lv~apTGsGKTl~~~l~i~~~-l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~- 153 (931)
++|+|+ +++.+.+++++ +++||||||||++|.++++.. +..+.+++|++||++|++|+++.+... .++...+..
T Consensus 5 ~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~~~~~ 81 (451)
T 2jlq_A 5 GEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGL--PIRYQTPAVK 81 (451)
T ss_dssp CSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS--CEEECCTTCS
T ss_pred CCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCc--eeeeeecccc
Confidence 778875 78888877776 999999999999998887754 567889999999999999999988522 344333322
Q ss_pred -ccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHH-hcCCCceEEEeccCCCChHHHHH
Q 002357 154 -TLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII-FLPPAIKMVFLSATMSNATQFAE 231 (931)
Q Consensus 154 -~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~-~l~~~~q~v~lSAT~~n~~e~~~ 231 (931)
...++..|.++|++.+.+.+.+. ..+.++++||+||||++ +..+...+..+.. ..+++.|+++||||+++... .
T Consensus 82 ~~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~--~ 157 (451)
T 2jlq_A 82 SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTD--P 157 (451)
T ss_dssp CCCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC--S
T ss_pred ccCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCccch--h
Confidence 23345678999999998877654 45789999999999988 4333333333322 24568999999999975321 1
Q ss_pred HHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCC
Q 002357 232 WICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSG 311 (931)
Q Consensus 232 ~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 311 (931)
+ ....+..+... ++.|...+
T Consensus 158 ~---~~~~~~~~~~~--~~~p~~~~------------------------------------------------------- 177 (451)
T 2jlq_A 158 F---PQSNSPIEDIE--REIPERSW------------------------------------------------------- 177 (451)
T ss_dssp S---CCCSSCEEEEE--CCCCSSCC-------------------------------------------------------
T ss_pred h---hcCCCceEecC--ccCCchhh-------------------------------------------------------
Confidence 0 00111111110 11110000
Q ss_pred CCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHh
Q 002357 312 SGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLL 391 (931)
Q Consensus 312 ~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l 391 (931)
. .++..+.+ ..+++||||+|++.|+.++..|...++.
T Consensus 178 ---~---~~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~g~~------------------------------------ 214 (451)
T 2jlq_A 178 ---N---TGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSGKR------------------------------------ 214 (451)
T ss_dssp ---S---SSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHTTTCC------------------------------------
T ss_pred ---H---HHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHcCCe------------------------------------
Confidence 0 01112222 3468999999999999999999876543
Q ss_pred hccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEeccee------cCCCC------CcccCHHH
Q 002357 392 KRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKK------WDGDS------HRYIGSGE 459 (931)
Q Consensus 392 ~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~------~d~~~------~~~~s~~~ 459 (931)
+..+||.+. +.+++.|++|.++|||||+++++|||+|+ ++||+.+.. |++.. ..|.+..+
T Consensus 215 ---~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~ 286 (451)
T 2jlq_A 215 ---VIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPAS 286 (451)
T ss_dssp ---EEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHH
T ss_pred ---EEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHH
Confidence 567888753 57899999999999999999999999999 989843310 11111 14889999
Q ss_pred HHHhhhccCCCCCCCceEEEEEeCC
Q 002357 460 YIQMSGRAGRRGKDDRGICIIMVDE 484 (931)
Q Consensus 460 y~Qr~GRaGR~G~~~~g~~ii~~~~ 484 (931)
|+||+|||||.|.+ .|.++++...
T Consensus 287 y~Qr~GRaGR~g~~-~g~~~~~~~~ 310 (451)
T 2jlq_A 287 AAQRRGRIGRNPAQ-EDDQYVFSGD 310 (451)
T ss_dssp HHHHHTTSSCCTTC-CCEEEEECSC
T ss_pred HHHhccccCCCCCC-CccEEEEeCC
Confidence 99999999999973 3666776643
No 43
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.6e-34 Score=338.44 Aligned_cols=286 Identities=18% Similarity=0.132 Sum_probs=210.7
Q ss_pred cCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC-CeEEEe
Q 002357 72 TYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMT 150 (931)
Q Consensus 72 ~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~vg~~t 150 (931)
+..++++++|..+++.+.++++++++||||||||.+|.++++. ++.+++|++||++|+.|+++.+.+.++ .++..+
T Consensus 213 r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~---~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~v 289 (666)
T 3o8b_A 213 TMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA---QGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRT 289 (666)
T ss_dssp HHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH---TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEEC
T ss_pred hccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH---CCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEE
Confidence 3345566777777788889999999999999999998888765 577999999999999999999988877 889999
Q ss_pred cccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCce--EEEeccCCCChHH
Q 002357 151 GDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIK--MVFLSATMSNATQ 228 (931)
Q Consensus 151 Gd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q--~v~lSAT~~n~~e 228 (931)
|+.....+.+|+|+||++| +.+....++++++|||||||.+ +.++...+..++..++...+ ++++|||+++...
T Consensus 290 G~~~~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~ 365 (666)
T 3o8b_A 290 GVRTITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGARLVVLATATPPGSVT 365 (666)
T ss_dssp SSCEECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCCC
T ss_pred CcEeccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcCCceEEEECCCCCcccc
Confidence 9988889999999999998 3445566788999999999765 44556667778888876665 7888999986311
Q ss_pred HHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCC
Q 002357 229 FAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKG 308 (931)
Q Consensus 229 ~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 308 (931)
...+. ......... ..+... ...
T Consensus 366 ------------------~~~p~-i~~v~~~~~-~~i~~~-~~~------------------------------------ 388 (666)
T 3o8b_A 366 ------------------VPHPN-IEEVALSNT-GEIPFY-GKA------------------------------------ 388 (666)
T ss_dssp ------------------CCCTT-EEEEECBSC-SSEEET-TEE------------------------------------
T ss_pred ------------------cCCcc-eEEEeeccc-chhHHH-Hhh------------------------------------
Confidence 00000 000000000 000000 000
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHH
Q 002357 309 GSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELML 388 (931)
Q Consensus 309 ~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~ 388 (931)
.. +......++||||++++.|+.+++.|.+.++.
T Consensus 389 ------~~-------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~--------------------------------- 422 (666)
T 3o8b_A 389 ------IP-------IEAIRGGRHLIFCHSKKKCDELAAKLSGLGIN--------------------------------- 422 (666)
T ss_dssp ------EC-------GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCC---------------------------------
T ss_pred ------hh-------hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCc---------------------------------
Confidence 00 00114578999999999999999999886654
Q ss_pred HHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEec------ceecC--CCC-----Cccc
Q 002357 389 PLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA------VKKWD--GDS-----HRYI 455 (931)
Q Consensus 389 ~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~------~~~~d--~~~-----~~~~ 455 (931)
+..+||+|++.+ |+++..+|||||+++++|||+| +++||+. ..+|| +.. ..|.
T Consensus 423 ------v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~ 488 (666)
T 3o8b_A 423 ------AVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQ 488 (666)
T ss_dssp ------EEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEEC
T ss_pred ------EEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcC
Confidence 688999999875 5667779999999999999998 8888742 22555 110 1388
Q ss_pred CHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 456 GSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 456 s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
+..+|+||+||||| |.. |. +.++++.
T Consensus 489 s~~syiQRiGRtGR-g~~--G~-i~lvt~~ 514 (666)
T 3o8b_A 489 DAVSRSQRRGRTGR-GRR--GI-YRFVTPG 514 (666)
T ss_dssp BHHHHHHHHTTBCS-SSC--EE-EEESCCC
T ss_pred CHHHHHHHhccCCC-CCC--CE-EEEEecc
Confidence 99999999999999 764 66 6666554
No 44
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=3.2e-34 Score=341.32 Aligned_cols=285 Identities=14% Similarity=0.070 Sum_probs=209.9
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHH-hCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccc--
Q 002357 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDV-- 153 (931)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l-~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~-- 153 (931)
++|+|+.+++.+.+|++++++||||||||++|.++++..+ ..+.++||++||++|+.|+++.+... .++...+..
T Consensus 172 ~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~~--~v~~~~~~l~~ 249 (618)
T 2whx_A 172 GEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGL--PIRYQTPAVKS 249 (618)
T ss_dssp CCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS--CEEECCTTSSC
T ss_pred CCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcCC--ceeEeccccee
Confidence 6788877899999999999999999999999999888665 56789999999999999999888632 455322221
Q ss_pred ccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcC-CCceEEEeccCCCChHHHHHH
Q 002357 154 TLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP-PAIKMVFLSATMSNATQFAEW 232 (931)
Q Consensus 154 ~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~-~~~q~v~lSAT~~n~~e~~~~ 232 (931)
...++..+.++|.+.+.+.+... ..+.++++||+||||++ +.++...+..++..++ ++.|+++||||+++... .+
T Consensus 250 ~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~--~~ 325 (618)
T 2whx_A 250 DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTD--PF 325 (618)
T ss_dssp CCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCC--SS
T ss_pred ccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhh--hh
Confidence 22345667789999888766654 34789999999999998 5566667777776665 68999999999975432 10
Q ss_pred HHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCC
Q 002357 233 ICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGS 312 (931)
Q Consensus 233 l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (931)
.. ..+..+..... + +.. .
T Consensus 326 ~~---~~~~~~~v~~~---------~-----------~~~-~-------------------------------------- 343 (618)
T 2whx_A 326 PQ---SNSPIEDIERE---------I-----------PER-S-------------------------------------- 343 (618)
T ss_dssp CC---CSSCEEEEECC---------C-----------CSS-C--------------------------------------
T ss_pred hc---cCCceeeeccc---------C-----------CHH-H--------------------------------------
Confidence 00 00000000000 0 000 0
Q ss_pred CCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhh
Q 002357 313 GGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLK 392 (931)
Q Consensus 313 ~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~ 392 (931)
.. .++..+.+ ...++||||+|++.|+.++..|.+.++.
T Consensus 344 -~~---~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~------------------------------------- 381 (618)
T 2whx_A 344 -WN---TGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSGKR------------------------------------- 381 (618)
T ss_dssp -CS---SSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHHTTCC-------------------------------------
T ss_pred -HH---HHHHHHHh-CCCCEEEEECChhHHHHHHHHHHHcCCc-------------------------------------
Confidence 00 11222333 3568999999999999999999876554
Q ss_pred ccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecc----------------eecCCCCCcccC
Q 002357 393 RGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAV----------------KKWDGDSHRYIG 456 (931)
Q Consensus 393 ~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~----------------~~~d~~~~~~~s 456 (931)
+..+||+ +|+.+++.|++|.++|||||+++++|||+| +++||... .+||. |.+
T Consensus 382 --v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~----P~s 450 (618)
T 2whx_A 382 --VIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPI----PVT 450 (618)
T ss_dssp --EEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEE----ECC
T ss_pred --EEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccc----cCC
Confidence 5788984 788899999999999999999999999998 77775432 24454 899
Q ss_pred HHHHHHhhhccCCCCCCCceEEEEEeC
Q 002357 457 SGEYIQMSGRAGRRGKDDRGICIIMVD 483 (931)
Q Consensus 457 ~~~y~Qr~GRaGR~G~~~~g~~ii~~~ 483 (931)
..+|+||+|||||.|. +.|.++++++
T Consensus 451 ~~~yiQR~GRaGR~g~-~~G~ai~l~~ 476 (618)
T 2whx_A 451 PASAAQRRGRIGRNPA-QEDDQYVFSG 476 (618)
T ss_dssp HHHHHHHHTTSSCCTT-CCCEEEEECS
T ss_pred HHHHHHhccccCCCCC-CCCeEEEEcc
Confidence 9999999999999975 2477888876
No 45
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.5e-33 Score=343.97 Aligned_cols=324 Identities=18% Similarity=0.190 Sum_probs=224.1
Q ss_pred CCCCCHHHHHHHHHH-hcCCcEEEEcCCCCCcHHHHHHHHHHH---HhC--CCEEEEEcCchhhHHHHHHHHHHhcC-Ce
Q 002357 74 SFELDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMA---FRD--KQRVIYTSPLKALSNQKYRELHQEFK-DV 146 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~l-~~g~~vlv~apTGsGKTl~~~l~i~~~---l~~--~~rvl~l~P~kaL~~Q~~~~l~~~~~-~v 146 (931)
+..|.+.|+++|+.+ ..+++++++||||||||+. ++++.. ... +.+++|++|+++|+.|+++.+...++ .+
T Consensus 91 ~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v 168 (773)
T 2xau_A 91 RELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKL 168 (773)
T ss_dssp TTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCB
T ss_pred hcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCch
Confidence 334778888888765 5678899999999999994 333321 122 67899999999999999998887765 33
Q ss_pred EEEec-----ccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEecccc-CCCCCchH-HHHHHHHhcCCCceEEEe
Q 002357 147 GLMTG-----DVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHY-MKDRERGV-VWEESIIFLPPAIKMVFL 219 (931)
Q Consensus 147 g~~tG-----d~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~-l~~~~~g~-~~~~ii~~l~~~~q~v~l 219 (931)
+...| +.......+|+|+||+++.+.+... ..+.++++||+||+|. ..+.+... .+..+. ...+..|++++
T Consensus 169 ~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~-~~~~~~~iIl~ 246 (773)
T 2xau_A 169 GEEVGYSIRFENKTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHERTLATDILMGLLKQVV-KRRPDLKIIIM 246 (773)
T ss_dssp TTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHH-HHCTTCEEEEE
T ss_pred hheecceeccccccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccccccchHHHHHHHHHHH-HhCCCceEEEE
Confidence 33222 2233467899999999999877654 3588999999999995 44422111 122232 33457899999
Q ss_pred ccCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCC
Q 002357 220 SATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENG 299 (931)
Q Consensus 220 SAT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 299 (931)
|||+ +...+++|++. ..++....+..|++.+..... ... +..
T Consensus 247 SAT~-~~~~l~~~~~~-----~~vi~v~gr~~pv~~~~~~~~----------~~~-----~~~----------------- 288 (773)
T 2xau_A 247 SATL-DAEKFQRYFND-----APLLAVPGRTYPVELYYTPEF----------QRD-----YLD----------------- 288 (773)
T ss_dssp ESCS-CCHHHHHHTTS-----CCEEECCCCCCCEEEECCSSC----------CSC-----HHH-----------------
T ss_pred eccc-cHHHHHHHhcC-----CCcccccCcccceEEEEecCC----------chh-----HHH-----------------
Confidence 9999 55677777752 223444455556554332211 000 000
Q ss_pred CCCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccC
Q 002357 300 KASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDR 379 (931)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~ 379 (931)
..+..++........+++||||++++.|+.++..|.... .... ...
T Consensus 289 ---------------~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~----------~~l~----~~~----- 334 (773)
T 2xau_A 289 ---------------SAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEG----------DQLV----REE----- 334 (773)
T ss_dssp ---------------HHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHH----------HHHH----HHH-----
T ss_pred ---------------HHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHH----------Hhhc----ccc-----
Confidence 011223333334456899999999999999999986410 0000 000
Q ss_pred CChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHh-----cCCceEEEecchhhcccCCCCcEEEEecce----ecCCC
Q 002357 380 NLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQ-----EGLVKALFATETFAMGLNMPAKTVVFTAVK----KWDGD 450 (931)
Q Consensus 380 ~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~-----~g~i~vLvaT~~la~GIdip~~~vVI~~~~----~~d~~ 450 (931)
......+..+||+|++.+|..+++.|+ +|..+|||||+++++|||+|++++||+... .||+.
T Consensus 335 ---------~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~ 405 (773)
T 2xau_A 335 ---------GCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPR 405 (773)
T ss_dssp ---------CCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETT
T ss_pred ---------cCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccc
Confidence 001123789999999999999999999 999999999999999999999999997433 36654
Q ss_pred CC------cccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 451 SH------RYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 451 ~~------~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
.. .|.+..+|+||+|||||.+ .|.||.++++.
T Consensus 406 ~g~~~L~~~p~S~~s~~QR~GRaGR~~---~G~~~~l~~~~ 443 (773)
T 2xau_A 406 IRVESLLVSPISKASAQQRAGRAGRTR---PGKCFRLYTEE 443 (773)
T ss_dssp TTEEEEEEEECCHHHHHHHHHGGGSSS---SEEEEESSCHH
T ss_pred cCccccccccCCHHHHHhhccccCCCC---CCEEEEEecHH
Confidence 21 2789999999999999983 59999998653
No 46
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=9e-33 Score=326.12 Aligned_cols=356 Identities=15% Similarity=0.096 Sum_probs=211.6
Q ss_pred ccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC----Ce
Q 002357 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----DV 146 (931)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~----~v 146 (931)
..++..|+|+|..+++.+.+|+ ++.++||+|||++|.+|++.....+..++|++||++||.|.++.+..++. .+
T Consensus 69 R~lg~~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v 146 (853)
T 2fsf_A 69 RVFGMRHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTV 146 (853)
T ss_dssp HHHSCCCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHcCCCCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 3468889999999999999988 99999999999999999986656788999999999999999988877754 78
Q ss_pred EEEecccccC-----CCCCeeEecHHHH-HHHHhcC------ccccCcccEEEEeccccCC-CCCc--------------
Q 002357 147 GLMTGDVTLS-----PNASCLVMTTEIL-RGMLYRG------SEVLKEVAWVIFDEIHYMK-DRER-------------- 199 (931)
Q Consensus 147 g~~tGd~~~~-----~~~~IlV~Tpe~L-~~~l~~~------~~~l~~l~~vViDEaH~l~-~~~~-------------- 199 (931)
++++|+.+.. .+++|+|+||++| .++|..+ ...++++.++|+||||.|+ |..+
T Consensus 147 ~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~ 226 (853)
T 2fsf_A 147 GINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSE 226 (853)
T ss_dssp EECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC------
T ss_pred EEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchh
Confidence 8999987532 2589999999999 6666543 2457899999999999998 5432
Q ss_pred -hHHHHHHHHhcCC--------------------CceEE------------------------EeccCCCChH-HHHHHH
Q 002357 200 -GVVWEESIIFLPP--------------------AIKMV------------------------FLSATMSNAT-QFAEWI 233 (931)
Q Consensus 200 -g~~~~~ii~~l~~--------------------~~q~v------------------------~lSAT~~n~~-e~~~~l 233 (931)
...+..++..+++ ..|+. ++|||.+... .+...+
T Consensus 227 ~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al 306 (853)
T 2fsf_A 227 MYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAAL 306 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHH
Confidence 3345566666663 34543 7899865311 110000
Q ss_pred H--h-hcCCCeE------------------------------------EEecCCCCCc--ce--eeeecc-CCCceeEee
Q 002357 234 C--H-LHKQPCH------------------------------------VVYTDFRPTP--LQ--HYVFPV-GGSGLYLVV 269 (931)
Q Consensus 234 ~--~-~~~~~~~------------------------------------v~~~~~rp~p--l~--~~~~~~-~~~~~~~~~ 269 (931)
. . +..+.-+ +.......+. +. .|+... ...++--..
T Consensus 307 ~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa 386 (853)
T 2fsf_A 307 RAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTA 386 (853)
T ss_dssp --------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTT
T ss_pred HHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCc
Confidence 0 0 0000000 0000000000 00 000000 000000000
Q ss_pred CccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHH--cCCCcEEEEecCHHHHHHHHH
Q 002357 270 DEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME--RKFQPVIVFSFSRRECEQHAM 347 (931)
Q Consensus 270 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~~~IVF~~sr~~~~~la~ 347 (931)
... ...|.+.+. +.-...+........+.... -......+...+++.+.. ..+.|+||||+|+..++.++.
T Consensus 387 ~te----~~ef~~iY~-l~vv~IPtn~p~~R~d~~d~--v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~ 459 (853)
T 2fsf_A 387 DTE----AFEFSSIYK-LDTVVVPTNRPMIRKDLPDL--VYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSN 459 (853)
T ss_dssp CCC----HHHHHHHHC-CEEEECCCSSCCCCEECCCE--EESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHH
T ss_pred hhH----HHHHHHHhC-CcEEEcCCCCCceeecCCcE--EEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHH
Confidence 000 011111110 00000000000000000000 000112345566666643 356899999999999999999
Q ss_pred HhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecch
Q 002357 348 SMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATET 427 (931)
Q Consensus 348 ~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~ 427 (931)
.|.+.|+.. .++||++.+.+++.+.+.|+.| .|+|||++
T Consensus 460 ~L~~~gi~~---------------------------------------~vLnak~~~rEa~iia~agr~G--~VtIATnm 498 (853)
T 2fsf_A 460 ELTKAGIKH---------------------------------------NVLNAKFHANEAAIVAQAGYPA--AVTIATNM 498 (853)
T ss_dssp HHHHTTCCC---------------------------------------EECCTTCHHHHHHHHHTTTSTT--CEEEEESC
T ss_pred HHHHCCCCE---------------------------------------EEecCChhHHHHHHHHhcCCCC--eEEEeccc
Confidence 999888774 7899999999999999999998 69999999
Q ss_pred hhcccCCCCc-------------------------------------EEEEecceecCCCCCcccCHHHHHHhhhccCCC
Q 002357 428 FAMGLNMPAK-------------------------------------TVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRR 470 (931)
Q Consensus 428 la~GIdip~~-------------------------------------~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~ 470 (931)
++||+|++.. .+|| +|+. |.+...|.||+||+||.
T Consensus 499 AgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI----~te~----pes~riy~qr~GRTGRq 570 (853)
T 2fsf_A 499 AGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHII----GTER----HESRRIDNQLRGRSGRQ 570 (853)
T ss_dssp CSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEE----ESSC----CSSHHHHHHHHTTSSGG
T ss_pred ccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEE----EccC----CCCHHHHHhhccccccC
Confidence 9999999973 6899 6776 88999999999999999
Q ss_pred CCCCceEEEEEeCC
Q 002357 471 GKDDRGICIIMVDE 484 (931)
Q Consensus 471 G~~~~g~~ii~~~~ 484 (931)
|..|.+..|+...+
T Consensus 571 Gd~G~s~~fls~eD 584 (853)
T 2fsf_A 571 GDAGSSRFYLSMED 584 (853)
T ss_dssp GCCEEEEEEEETTS
T ss_pred CCCeeEEEEecccH
Confidence 99755544444333
No 47
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=5.7e-32 Score=319.33 Aligned_cols=353 Identities=15% Similarity=0.106 Sum_probs=232.8
Q ss_pred ccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC----Ce
Q 002357 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----DV 146 (931)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~----~v 146 (931)
..+++.|+++|..+++.+.+|+ ++.++||+|||++|.+|++.....+..|+|++||++||.|.++.+..++. .+
T Consensus 106 R~lG~rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv 183 (922)
T 1nkt_A 106 RVLDQRPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQV 183 (922)
T ss_dssp HHHSCCCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHcCCCCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeE
Confidence 4578999999999999999988 99999999999999999976555678999999999999999888877654 78
Q ss_pred EEEecccccC-----CCCCeeEecHHHH-HHHHhcC------ccccCcccEEEEeccccCC-CC---------------C
Q 002357 147 GLMTGDVTLS-----PNASCLVMTTEIL-RGMLYRG------SEVLKEVAWVIFDEIHYMK-DR---------------E 198 (931)
Q Consensus 147 g~~tGd~~~~-----~~~~IlV~Tpe~L-~~~l~~~------~~~l~~l~~vViDEaH~l~-~~---------------~ 198 (931)
++++|+.+.. ..++|+|+||++| .++|..+ ...++.+.++|+||||.|+ |. +
T Consensus 184 ~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~ 263 (922)
T 1nkt_A 184 GVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASN 263 (922)
T ss_dssp EECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHH
T ss_pred EEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchh
Confidence 9999987532 2489999999998 5665433 3557899999999999997 43 2
Q ss_pred chHHHHHHHHhcC---------CCceEE-----------------EeccCCCChH-HHHHHHHh---hcCCCeEEE----
Q 002357 199 RGVVWEESIIFLP---------PAIKMV-----------------FLSATMSNAT-QFAEWICH---LHKQPCHVV---- 244 (931)
Q Consensus 199 ~g~~~~~ii~~l~---------~~~q~v-----------------~lSAT~~n~~-e~~~~l~~---~~~~~~~v~---- 244 (931)
+...+..++..++ +..|++ ++|||.+... .+...+.. +..+.-+++
T Consensus 264 ~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~ 343 (922)
T 1nkt_A 264 WYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGE 343 (922)
T ss_dssp HHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSC
T ss_pred HHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCc
Confidence 4456778888887 678888 8999986532 22222211 111111111
Q ss_pred ---ecCC--CC-------------------Ccc------------eeeeec-cCCCceeEeeCccchhchhhHHHHHHHH
Q 002357 245 ---YTDF--RP-------------------TPL------------QHYVFP-VGGSGLYLVVDEKEQFREDNFVKLQDTF 287 (931)
Q Consensus 245 ---~~~~--rp-------------------~pl------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l 287 (931)
...+ |. +.+ +.|+.. ....++--..... ...+.+.+. +
T Consensus 344 vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te----~~Ef~~iY~-l 418 (922)
T 1nkt_A 344 VLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTE----AAELHEIYK-L 418 (922)
T ss_dssp EEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGG----HHHHHHHHC-C
T ss_pred eEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhH----HHHHHHHhC-C
Confidence 1110 10 000 000000 0000000000000 011111110 0
Q ss_pred HhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHHH--cCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHH
Q 002357 288 LKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQ 365 (931)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~ 365 (931)
.-...+........+.... -......+...++..+.. ..+.|+||||.|+..++.++..|.+.|+..
T Consensus 419 ~vv~IPtn~p~~R~d~~d~--v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~--------- 487 (922)
T 1nkt_A 419 GVVSIPTNMPMIREDQSDL--IYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPH--------- 487 (922)
T ss_dssp EEEECCCSSCCCCEECCCE--EESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC---------
T ss_pred CeEEeCCCCCcccccCCcE--EEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCE---------
Confidence 0000000000000000000 000112244556665543 356799999999999999999999888774
Q ss_pred HHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCc--------
Q 002357 366 VFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAK-------- 437 (931)
Q Consensus 366 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~-------- 437 (931)
.++||++...+++.+.+.|+.| .|+|||++++||+|++..
T Consensus 488 ------------------------------~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~ 535 (922)
T 1nkt_A 488 ------------------------------NVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTD 535 (922)
T ss_dssp ------------------------------EEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHH
T ss_pred ------------------------------EEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHH
Confidence 7899999888888888888888 699999999999999974
Q ss_pred --------------------------------------------EEEEecceecCCCCCcccCHHHHHHhhhccCCCCCC
Q 002357 438 --------------------------------------------TVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKD 473 (931)
Q Consensus 438 --------------------------------------------~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~ 473 (931)
.+|| +|+. |.+...|.|++||+||.|..
T Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI----~te~----pes~riy~qr~GRTGRqGdp 607 (922)
T 1nkt_A 536 QRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVL----GTER----HESRRIDNQLRGRSGRQGDP 607 (922)
T ss_dssp HHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEE----ECSC----CSSHHHHHHHHHTSSGGGCC
T ss_pred HHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEE----eccC----CCCHHHHHHHhcccccCCCC
Confidence 5899 6776 88999999999999999996
Q ss_pred CceEEEEEeC
Q 002357 474 DRGICIIMVD 483 (931)
Q Consensus 474 ~~g~~ii~~~ 483 (931)
|.++.+++
T Consensus 608 --G~s~fflS 615 (922)
T 1nkt_A 608 --GESRFYLS 615 (922)
T ss_dssp --EEEEEEEE
T ss_pred --eeEEEEec
Confidence 55544444
No 48
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.6e-32 Score=315.29 Aligned_cols=271 Identities=16% Similarity=0.137 Sum_probs=186.8
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHH-HHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc--CCCCCeeEecH
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIA-MAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL--SPNASCLVMTT 166 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~-~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~--~~~~~IlV~Tp 166 (931)
+|++++++||||||||++|+++++ ..+..+.+++|++||++|+.|+++.+.. -.+++.+|.... .++.-+.++|.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRG--EPIRYMTPAVQSERTGNEIVDFMCH 78 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT--SCEEEC---------CCCSEEEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhCC--CeEEEEecCccccCCCCceEEEEch
Confidence 478999999999999999988888 5567888999999999999999988862 267777775332 33566778899
Q ss_pred HHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHh-cCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEe
Q 002357 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF-LPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVY 245 (931)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~-l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~ 245 (931)
+.+...+.. ...++++++||+||+|++. ..+......+... .+...|+++||||+++... .+.
T Consensus 79 ~~l~~~l~~-~~~~~~l~~vViDEaH~~~-~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~------~~~-------- 142 (431)
T 2v6i_A 79 STFTMKLLQ-GVRVPNYNLYIMDEAHFLD-PASVAARGYIETRVSMGDAGAIFMTATPPGTTE------AFP-------- 142 (431)
T ss_dssp HHHHHHHHH-TCCCCCCSEEEEESTTCCS-HHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCC------SSC--------
T ss_pred HHHHHHHhc-CccccCCCEEEEeCCccCC-ccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchh------hhc--------
Confidence 988776665 4458899999999999973 2212222222222 3668999999999985311 000
Q ss_pred cCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHHH
Q 002357 246 TDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIM 325 (931)
Q Consensus 246 ~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 325 (931)
.. ..|+...... ... .... .++..+.
T Consensus 143 ~~--~~~i~~~~~~---------~~~----------------------------------------~~~~---~~~~~l~ 168 (431)
T 2v6i_A 143 PS--NSPIIDEETR---------IPD----------------------------------------KAWN---SGYEWIT 168 (431)
T ss_dssp CC--SSCCEEEECC---------CCS----------------------------------------SCCS---SCCHHHH
T ss_pred CC--CCceeecccc---------CCH----------------------------------------HHHH---HHHHHHH
Confidence 00 0111100000 000 0000 1122222
Q ss_pred HcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHH
Q 002357 326 ERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPV 405 (931)
Q Consensus 326 ~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~ 405 (931)
+ ..+++||||++++.|+.++..|...++. ++.+||+
T Consensus 169 ~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~---------------------------------------v~~lhg~---- 204 (431)
T 2v6i_A 169 E-FDGRTVWFVHSIKQGAEIGTCLQKAGKK---------------------------------------VLYLNRK---- 204 (431)
T ss_dssp S-CSSCEEEECSSHHHHHHHHHHHHHTTCC---------------------------------------EEEESTT----
T ss_pred c-CCCCEEEEeCCHHHHHHHHHHHHHcCCe---------------------------------------EEEeCCc----
Confidence 2 3568999999999999999999775443 6889997
Q ss_pred HHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEec-------------ceecCCCCCcccCHHHHHHhhhccCCCCC
Q 002357 406 IKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA-------------VKKWDGDSHRYIGSGEYIQMSGRAGRRGK 472 (931)
Q Consensus 406 ~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~-------------~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~ 472 (931)
+|+.+++.|++|.++|||||+++++|||+| +..||.. ...|+. |.+..+|+||+||+||.|.
T Consensus 205 ~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~----p~~~~~~~Qr~GR~GR~g~ 279 (431)
T 2v6i_A 205 TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPI----AITPASAAQRRGRIGRNPE 279 (431)
T ss_dssp THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEE----ECCHHHHHHHHTTSSCCTT
T ss_pred cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccc----cCCHHHHHHhhhccCCCCC
Confidence 588899999999999999999999999999 4444321 225555 8899999999999999985
Q ss_pred CCceEEEEEe
Q 002357 473 DDRGICIIMV 482 (931)
Q Consensus 473 ~~~g~~ii~~ 482 (931)
. .|.++++.
T Consensus 280 ~-~~~~~~~~ 288 (431)
T 2v6i_A 280 K-LGDIYAYS 288 (431)
T ss_dssp C-CCCEEEEC
T ss_pred C-CCeEEEEc
Confidence 4 34455554
No 49
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.9e-31 Score=334.07 Aligned_cols=374 Identities=15% Similarity=0.099 Sum_probs=238.1
Q ss_pred CCCCCHHHHHHHHHHhc--CCcEEEEcCCCCCcHHHHHHHHHHHHhCCC--EEEEEcCchhhHHHHHHHHHHhcC-CeEE
Q 002357 74 SFELDPFQRVSVACLER--NESVLVSAHTSAGKTAVAEYAIAMAFRDKQ--RVIYTSPLKALSNQKYRELHQEFK-DVGL 148 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~--g~~vlv~apTGsGKTl~~~l~i~~~l~~~~--rvl~l~P~kaL~~Q~~~~l~~~~~-~vg~ 148 (931)
.++|+|||.+++..+.. +.+++++++||+|||+++..++...+..+. ++||++|+ +|+.||.+++.+.|+ .+.+
T Consensus 151 ~~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v 229 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFAL 229 (968)
T ss_dssp SSCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEE
T ss_pred CCCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEE
Confidence 57799999999988754 458999999999999999888887776654 99999999 999999999988887 6777
Q ss_pred Eeccc---------ccCCCCCeeEecHHHHHHHHhc-CccccCcccEEEEeccccCCCCCch--HHHHHHHHhcCCCceE
Q 002357 149 MTGDV---------TLSPNASCLVMTTEILRGMLYR-GSEVLKEVAWVIFDEIHYMKDRERG--VVWEESIIFLPPAIKM 216 (931)
Q Consensus 149 ~tGd~---------~~~~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~~vViDEaH~l~~~~~g--~~~~~ii~~l~~~~q~ 216 (931)
++|+. ......+|+|+|++.+.+.... ......++++||+||||++.+.... ..+..+........++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~ 309 (968)
T 3dmq_A 230 FDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGV 309 (968)
T ss_dssp CCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSE
T ss_pred EccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcE
Confidence 76654 1223579999999988643211 1122457999999999999765422 1233333333455679
Q ss_pred EEeccCCC--ChHHHHHHHHhhcCCCeEEE--------------------ecCC--C---CCcceeeeeccCCCceeEee
Q 002357 217 VFLSATMS--NATQFAEWICHLHKQPCHVV--------------------YTDF--R---PTPLQHYVFPVGGSGLYLVV 269 (931)
Q Consensus 217 v~lSAT~~--n~~e~~~~l~~~~~~~~~v~--------------------~~~~--r---p~pl~~~~~~~~~~~~~~~~ 269 (931)
++||||+. +..++..++.........-. .... . ...+...+.......+....
T Consensus 310 L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~ 389 (968)
T 3dmq_A 310 LLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAA 389 (968)
T ss_dssp EESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGT
T ss_pred EEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcc
Confidence 99999984 22333333332221110000 0000 0 00000000000000000000
Q ss_pred CccchhchhhHHHHHHHHHhhhcCCC------c-CCCCC-----------------------------------------
Q 002357 270 DEKEQFREDNFVKLQDTFLKQKIGGR------R-ENGKA----------------------------------------- 301 (931)
Q Consensus 270 ~~~~~~~~~~~~~~~~~l~~~~~~~~------~-~~~~~----------------------------------------- 301 (931)
..............+..+........ + ...+.
T Consensus 390 ~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 469 (968)
T 3dmq_A 390 NSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLY 469 (968)
T ss_dssp CCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHC
T ss_pred cchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcC
Confidence 00000000011111111111100000 0 00000
Q ss_pred ----CCC-c-cCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhcc-CCCCChHHHHHHHHHHHHHHhhc
Q 002357 302 ----SGR-M-AKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSK-LDFNTQEEKDTVEQVFQNAVDCL 374 (931)
Q Consensus 302 ----~~~-~-~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~-~~~~~~~e~~~i~~~~~~~~~~l 374 (931)
... . ..........+...+.+.+....+.++||||+++..++.++..|.. .++.
T Consensus 470 pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~------------------- 530 (968)
T 3dmq_A 470 PERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIR------------------- 530 (968)
T ss_dssp SGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCC-------------------
T ss_pred hHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCc-------------------
Confidence 000 0 0000112234566677777777788999999999999999999974 4543
Q ss_pred CcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCC--ceEEEecchhhcccCCCCcEEEEecceecCCCCC
Q 002357 375 NEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGL--VKALFATETFAMGLNMPAKTVVFTAVKKWDGDSH 452 (931)
Q Consensus 375 ~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~--i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~ 452 (931)
+..+||+|++.+|+.+++.|++|. ++|||||+++++|+|+|++++|| .||.
T Consensus 531 --------------------~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI----~~d~--- 583 (968)
T 3dmq_A 531 --------------------AAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMV----MFDL--- 583 (968)
T ss_dssp --------------------EEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEE----CSSC---
T ss_pred --------------------EEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEE----EecC---
Confidence 689999999999999999999998 99999999999999999999999 7787
Q ss_pred cccCHHHHHHhhhccCCCCCCCceEEEEEeCCccCHHHHHhhh
Q 002357 453 RYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMV 495 (931)
Q Consensus 453 ~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~~~~~~l~~l~ 495 (931)
|.++..|.||+||+||.|+.+...++.++.+......+.+..
T Consensus 584 -p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 584 -PFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp -CSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred -CCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 899999999999999999987777777776654444455554
No 50
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.2e-32 Score=316.99 Aligned_cols=273 Identities=18% Similarity=0.153 Sum_probs=178.2
Q ss_pred HHhcCCcEEEEcCCCCCcHHHHHHHHHHHH-hCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc--CCCCCeeE
Q 002357 87 CLERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL--SPNASCLV 163 (931)
Q Consensus 87 ~l~~g~~vlv~apTGsGKTl~~~l~i~~~l-~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~--~~~~~IlV 163 (931)
.+.+|++++++||||||||++|+++++..+ ..+.+++|++||++|+.|+++.+..+ .++..++.... .++.-+-.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~--~v~~~~~~~~~v~Tp~~l~~~ 81 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGL--DVKFHTQAFSAHGSGREVIDA 81 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS--CEEEESSCCCCCCCSSCCEEE
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcC--CeEEecccceeccCCccceee
Confidence 356889999999999999999999888755 56779999999999999999998754 34443333211 11112223
Q ss_pred ecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc-CCCceEEEeccCCCChHHHHHHHHhhcCCCeE
Q 002357 164 MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL-PPAIKMVFLSATMSNATQFAEWICHLHKQPCH 242 (931)
Q Consensus 164 ~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l-~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~ 242 (931)
++.+.+...+.. ...++++++||+||+|++ +..+......+...+ +...|+++||||+++... . +..
T Consensus 82 l~~~~l~~~~~~-~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~--~----~~~---- 149 (440)
T 1yks_A 82 MCHATLTYRMLE-PTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSD--E----FPH---- 149 (440)
T ss_dssp EEHHHHHHHHTS-SSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC--S----SCC----
T ss_pred ecccchhHhhhC-cccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhh--h----hhh----
Confidence 333444333322 234789999999999998 333333223232223 468999999999974421 0 000
Q ss_pred EEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHH
Q 002357 243 VVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVK 322 (931)
Q Consensus 243 v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 322 (931)
.+.++...-. .+... .... ++.
T Consensus 150 ------~~~~~~~~~~---------~~~~~---------------------------------------~~~~----~~~ 171 (440)
T 1yks_A 150 ------SNGEIEDVQT---------DIPSE---------------------------------------PWNT----GHD 171 (440)
T ss_dssp ------CSSCEEEEEC---------CCCSS---------------------------------------CCSS----SCH
T ss_pred ------cCCCeeEeee---------ccChH---------------------------------------HHHH----HHH
Confidence 0111110000 00000 0001 112
Q ss_pred HHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCC
Q 002357 323 MIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGL 402 (931)
Q Consensus 323 ~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l 402 (931)
.+.+ ...++||||++++.|+.++..|...++. +..+||
T Consensus 172 ~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~~~---------------------------------------v~~lhg-- 209 (440)
T 1yks_A 172 WILA-DKRPTAWFLPSIRAANVMAASLRKAGKS---------------------------------------VVVLNR-- 209 (440)
T ss_dssp HHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCC---------------------------------------EEECCS--
T ss_pred HHHh-cCCCEEEEeCCHHHHHHHHHHHHHcCCC---------------------------------------EEEecc--
Confidence 2222 3578999999999999999999875543 688999
Q ss_pred CHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEec---------------ceecCCCCCcccCHHHHHHhhhcc
Q 002357 403 LPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA---------------VKKWDGDSHRYIGSGEYIQMSGRA 467 (931)
Q Consensus 403 ~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~---------------~~~~d~~~~~~~s~~~y~Qr~GRa 467 (931)
.+|+.+++.|++|.++|||||+++++|||+| +++||+. ...||. |.+..+|+||+||+
T Consensus 210 --~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~----p~~~~~~~Qr~GR~ 282 (440)
T 1yks_A 210 --KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPL----RISASSAAQRRGRI 282 (440)
T ss_dssp --SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEE----ECCHHHHHHHHTTS
T ss_pred --hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccc----ccCHHHHHHhcccc
Confidence 4688999999999999999999999999999 9988852 123555 89999999999999
Q ss_pred CCCC-CCCceEEEEEe
Q 002357 468 GRRG-KDDRGICIIMV 482 (931)
Q Consensus 468 GR~G-~~~~g~~ii~~ 482 (931)
||.| . .|.|++++
T Consensus 283 GR~g~~--~g~~~~l~ 296 (440)
T 1yks_A 283 GRNPNR--DGDSYYYS 296 (440)
T ss_dssp SCCTTC--CCEEEEEC
T ss_pred CCCCCC--CceEEEEe
Confidence 9984 4 48888886
No 51
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=4.7e-33 Score=333.26 Aligned_cols=288 Identities=17% Similarity=0.145 Sum_probs=196.9
Q ss_pred CCCHHHH-----HHHHHHh------cCCcEEEEcCCCCCcHHHHHHHHHHH-HhCCCEEEEEcCchhhHHHHHHHHHHhc
Q 002357 76 ELDPFQR-----VSVACLE------RNESVLVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPLKALSNQKYRELHQEF 143 (931)
Q Consensus 76 ~l~~~Q~-----~ai~~l~------~g~~vlv~apTGsGKTl~~~l~i~~~-l~~~~rvl~l~P~kaL~~Q~~~~l~~~~ 143 (931)
.|+++|+ ++|+.+. +|++++++||||||||++|+++++.. ...+.+++|++||++|+.|+++.+..+
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~- 293 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGL- 293 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS-
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcC-
Confidence 4899999 9998877 89999999999999999999988876 467789999999999999999998755
Q ss_pred CCeEEEecccc--cCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc-CCCceEEEec
Q 002357 144 KDVGLMTGDVT--LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL-PPAIKMVFLS 220 (931)
Q Consensus 144 ~~vg~~tGd~~--~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l-~~~~q~v~lS 220 (931)
.++..++... ..++.-+-+++.+.+...+... ..++++++||+||||++ +..+......+...+ +...|+++||
T Consensus 294 -~i~~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~S 370 (673)
T 2wv9_A 294 -PVRYLTPAVQREHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMT 370 (673)
T ss_dssp -CCEECCC---CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEEC
T ss_pred -CeeeecccccccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEc
Confidence 3443333222 1223344456666665544443 45889999999999998 221112222233333 3689999999
Q ss_pred cCCCChHHHHHHHHhhcCCCeEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCC
Q 002357 221 ATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGK 300 (931)
Q Consensus 221 AT~~n~~e~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 300 (931)
||++.... .+.. ...|+...... ....
T Consensus 371 AT~~~~i~------~~~~----------~~~~i~~v~~~---------~~~~---------------------------- 397 (673)
T 2wv9_A 371 ATPPGTSD------PFPD----------TNSPVHDVSSE---------IPDR---------------------------- 397 (673)
T ss_dssp SSCTTCCC------SSCC----------CSSCEEEEECC---------CCSS----------------------------
T ss_pred CCCChhhh------hhcc----------cCCceEEEeee---------cCHH----------------------------
Confidence 99974321 0000 01111111000 0000
Q ss_pred CCCCccCCCCCCCCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCC
Q 002357 301 ASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRN 380 (931)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~ 380 (931)
.... ++..+.+ ...++||||++++.|+.++..|...++.
T Consensus 398 -----------~~~~----~l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~------------------------- 436 (673)
T 2wv9_A 398 -----------AWSS----GFEWITD-YAGKTVWFVASVKMSNEIAQCLQRAGKR------------------------- 436 (673)
T ss_dssp -----------CCSS----CCHHHHS-CCSCEEEECSSHHHHHHHHHHHHTTTCC-------------------------
T ss_pred -----------HHHH----HHHHHHh-CCCCEEEEECCHHHHHHHHHHHHhCCCe-------------------------
Confidence 0001 1122222 4578999999999999999999876554
Q ss_pred ChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEeccee------cCCC----
Q 002357 381 LPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKK------WDGD---- 450 (931)
Q Consensus 381 l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~------~d~~---- 450 (931)
+..+||+ +|+.+++.|++|.++|||||+++++|||+| +++||+.... ||..
T Consensus 437 --------------v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ 497 (673)
T 2wv9_A 437 --------------VIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVI 497 (673)
T ss_dssp --------------EEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEE
T ss_pred --------------EEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccce
Confidence 6889994 799999999999999999999999999999 8888853211 1211
Q ss_pred --CCcccCHHHHHHhhhccCCC-CCCCceEEEEEe
Q 002357 451 --SHRYIGSGEYIQMSGRAGRR-GKDDRGICIIMV 482 (931)
Q Consensus 451 --~~~~~s~~~y~Qr~GRaGR~-G~~~~g~~ii~~ 482 (931)
-..|.+..+|+||+||+||. |. .|.+++++
T Consensus 498 ll~d~P~s~~~y~Qr~GRaGR~~g~--~G~ai~l~ 530 (673)
T 2wv9_A 498 LSVPSAITSASAAQRRGRVGRNPSQ--IGDEYHYG 530 (673)
T ss_dssp ECCSEECCHHHHHHHHTTSSCCSSC--CCEEEEEC
T ss_pred ecccCCCCHHHHHHHhhccCCCCCC--CCEEEEEE
Confidence 12389999999999999999 55 47777775
No 52
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.98 E-value=1.2e-31 Score=321.58 Aligned_cols=328 Identities=15% Similarity=0.144 Sum_probs=192.4
Q ss_pred CCCCCHHHHHHHHHHhc-----CCcEEEEcCCCCCcHHHHHHHHHHHHh---------CCCEEEEEcCchhhHHHHH-HH
Q 002357 74 SFELDPFQRVSVACLER-----NESVLVSAHTSAGKTAVAEYAIAMAFR---------DKQRVIYTSPLKALSNQKY-RE 138 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~-----g~~vlv~apTGsGKTl~~~l~i~~~l~---------~~~rvl~l~P~kaL~~Q~~-~~ 138 (931)
++.|+|+|.+|++.+.. ++++++++|||+|||+++...+...+. .+.++||++|+++|+.|++ +.
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 45799999999998754 467999999999999998776666654 4589999999999999999 77
Q ss_pred HHHhcCCeEEEecccccCCCCCeeEecHHHHHHHHhc----CccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCc
Q 002357 139 LHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYR----GSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAI 214 (931)
Q Consensus 139 l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~~----~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~ 214 (931)
++.+...++.+.++ ....+.+|+|+||++|.+.+.. .......+++||+||||++.+.. +..|..++..++ ..
T Consensus 256 ~~~~~~~~~~~~~~-~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~-~~ 332 (590)
T 3h1t_A 256 FTPFGDARHKIEGG-KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFE-PA 332 (590)
T ss_dssp CTTTCSSEEECCC---CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHHHST-TS
T ss_pred HHhcchhhhhhhcc-CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhCC-cc
Confidence 87766667666654 3456789999999999876532 12235678999999999997642 356777777776 47
Q ss_pred eEEEeccCCCChH--HHHHHHHhhcCCCeEEEec-----CCCCCcceeeeeccCCC--ceeEe---eC------ccchhc
Q 002357 215 KMVFLSATMSNAT--QFAEWICHLHKQPCHVVYT-----DFRPTPLQHYVFPVGGS--GLYLV---VD------EKEQFR 276 (931)
Q Consensus 215 q~v~lSAT~~n~~--e~~~~l~~~~~~~~~v~~~-----~~rp~pl~~~~~~~~~~--~~~~~---~~------~~~~~~ 276 (931)
++++||||+.+.. +...+++ .++..... +....|........... ..... .+ ....+.
T Consensus 333 ~~l~lTATP~~~~~~~~~~~f~----~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (590)
T 3h1t_A 333 FQIGMTATPLREDNRDTYRYFG----NPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQ 408 (590)
T ss_dssp EEEEEESSCSCTTTHHHHHHSC----SCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------
T ss_pred eEEEeccccccccchhHHHHcC----CceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCC
Confidence 8999999987543 2333332 22222110 00111111111100000 00000 00 000000
Q ss_pred hhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCH-HHHHHHHHH-cCCCcEEEEecCHHHHHHHHHHhccCCC
Q 002357 277 EDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDI-FKIVKMIME-RKFQPVIVFSFSRRECEQHAMSMSKLDF 354 (931)
Q Consensus 277 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~l~~-~~~~~~IVF~~sr~~~~~la~~L~~~~~ 354 (931)
...+...+..- .....+ ..+...+.. ....++||||++++.|+.++..|.+.+.
T Consensus 409 ~~~~~~~~~~~------------------------~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~ 464 (590)
T 3h1t_A 409 TKDFERVIALK------------------------ARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNS 464 (590)
T ss_dssp CCSHHHHHHHH------------------------HTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTH
T ss_pred HHHhhhHhcCh------------------------HHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhh
Confidence 00000000000 000011 112222332 2457899999999999999999976321
Q ss_pred CChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCce---EEEecchhhcc
Q 002357 355 NTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVK---ALFATETFAMG 431 (931)
Q Consensus 355 ~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~---vLvaT~~la~G 431 (931)
.. .......+..+||+++ .+|+.+++.|++|..+ ||+||+++++|
T Consensus 465 ~~-------------------------------~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~G 512 (590)
T 3h1t_A 465 DL-------------------------------SRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTG 512 (590)
T ss_dssp HH-------------------------------HTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTT
T ss_pred hh-------------------------------hccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcC
Confidence 10 0000112567888875 4799999999998866 88999999999
Q ss_pred cCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCC
Q 002357 432 LNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGK 472 (931)
Q Consensus 432 Idip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~ 472 (931)
||+|++++|| .|+. +.++..|+||+||+||.|.
T Consensus 513 iDip~v~~Vi----~~~~----~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 513 VDAPTCKNVV----LARV----VNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp CCCTTEEEEE----EESC----CCCHHHHHHHHTTSCCCBG
T ss_pred ccchheeEEE----EEec----CCChHHHHHHHhhhcccCc
Confidence 9999999999 6676 8899999999999999886
No 53
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.98 E-value=1.2e-32 Score=318.75 Aligned_cols=278 Identities=17% Similarity=0.135 Sum_probs=187.6
Q ss_pred HHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHH-hCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccc--cCCCCCe
Q 002357 85 VACLERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVT--LSPNASC 161 (931)
Q Consensus 85 i~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l-~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~--~~~~~~I 161 (931)
...+.+|++++++||||||||++|.++++..+ ..+.++||++||++|++|+++.+... .++...+... ..+..-+
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~~~~~~~~t~~~~i 92 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGL--PVRYQTSAVQREHQGNEIV 92 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTS--CEEECC--------CCCSE
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCc--eEeEEecccccCCCCCcEE
Confidence 44568889999999999999999999988765 57889999999999999999998722 3443333322 1344567
Q ss_pred eEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHH-hcCCCceEEEeccCCCChHHHHHHHHhhcCCC
Q 002357 162 LVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII-FLPPAIKMVFLSATMSNATQFAEWICHLHKQP 240 (931)
Q Consensus 162 lV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~-~l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~ 240 (931)
.++|.+.+.+.+... ..++++++||+||||.+. ......+..+.. ..++..|+++||||++.... . ...
T Consensus 93 ~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~-~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~~--~----~~~-- 162 (459)
T 2z83_A 93 DVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTD-PASIAARGYIATKVELGEAAAIFMTATPPGTTD--P----FPD-- 162 (459)
T ss_dssp EEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCS-HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC--S----SCC--
T ss_pred EEEchHHHHHHhhcc-ccccCCcEEEEECCccCC-chhhHHHHHHHHHhccCCccEEEEEcCCCcchh--h----hcc--
Confidence 789999887766654 457899999999999852 111112211111 23468999999999974321 0 000
Q ss_pred eEEEecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHH
Q 002357 241 CHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKI 320 (931)
Q Consensus 241 ~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 320 (931)
...|+...... .... . ... +
T Consensus 163 --------~~~pi~~~~~~---------~~~~---------------------------------------~-~~~---~ 182 (459)
T 2z83_A 163 --------SNAPIHDLQDE---------IPDR---------------------------------------A-WSS---G 182 (459)
T ss_dssp --------CSSCEEEEECC---------CCSS---------------------------------------C-CSS---C
T ss_pred --------CCCCeEEeccc---------CCcc---------------------------------------h-hHH---H
Confidence 01111100000 0000 0 000 0
Q ss_pred HHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccC
Q 002357 321 VKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHS 400 (931)
Q Consensus 321 l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg 400 (931)
+..+.+ ..+++||||+|++.|+.++..|...++. +..+||
T Consensus 183 ~~~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~g~~---------------------------------------v~~lh~ 222 (459)
T 2z83_A 183 YEWITE-YAGKTVWFVASVKMGNEIAMCLQRAGKK---------------------------------------VIQLNR 222 (459)
T ss_dssp CHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCC---------------------------------------EEEEST
T ss_pred HHHHHh-cCCCEEEEeCChHHHHHHHHHHHhcCCc---------------------------------------EEecCH
Confidence 112222 3578999999999999999999876554 577888
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecce------e----------cCCCCCcccCHHHHHHhh
Q 002357 401 GLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVK------K----------WDGDSHRYIGSGEYIQMS 464 (931)
Q Consensus 401 ~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~------~----------~d~~~~~~~s~~~y~Qr~ 464 (931)
. +|+.+++.|++|.++|||||+++++|||+|+ ++||+... . ||. |.+..+|+||+
T Consensus 223 ~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~----p~s~~~~~QR~ 293 (459)
T 2z83_A 223 K----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPS----PITSASAAQRR 293 (459)
T ss_dssp T----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCE----ECCHHHHHHHH
T ss_pred H----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCC----CCCHHHHHHhc
Confidence 5 7888999999999999999999999999999 88885220 1 344 89999999999
Q ss_pred hccCCCCCCCceEEEEEeCC
Q 002357 465 GRAGRRGKDDRGICIIMVDE 484 (931)
Q Consensus 465 GRaGR~G~~~~g~~ii~~~~ 484 (931)
|||||.|.. .|.+++++.+
T Consensus 294 GRaGR~g~~-~G~~~~~~~~ 312 (459)
T 2z83_A 294 GRVGRNPNQ-VGDEYHYGGA 312 (459)
T ss_dssp TTSSCCTTC-CCEEEEECSC
T ss_pred cccCCCCCC-CCeEEEEEcc
Confidence 999999961 3666666654
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.97 E-value=4.4e-29 Score=293.64 Aligned_cols=344 Identities=13% Similarity=0.101 Sum_probs=221.7
Q ss_pred CCCCCCHHHHHHHHHH----hcCCcEEEEcCCCCCcHHHHHHHHHHHHhC--CCEEEEEcCchhhHHHHHHHHHHhcC--
Q 002357 73 YSFELDPFQRVSVACL----ERNESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSNQKYRELHQEFK-- 144 (931)
Q Consensus 73 ~~f~l~~~Q~~ai~~l----~~g~~vlv~apTGsGKTl~~~l~i~~~l~~--~~rvl~l~P~kaL~~Q~~~~l~~~~~-- 144 (931)
+..+|+|||.++++.+ ..+.+++++++||+|||+++...+...... ..++||++| ..|+.||.+++.++++
T Consensus 34 ~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~ 112 (500)
T 1z63_A 34 IKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHL 112 (500)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTS
T ss_pred hhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCc
Confidence 4557999999999876 567899999999999999986666555433 478999999 5799999999999987
Q ss_pred CeEEEecccccC--CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccC
Q 002357 145 DVGLMTGDVTLS--PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSAT 222 (931)
Q Consensus 145 ~vg~~tGd~~~~--~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT 222 (931)
.+.+++|+.... ...+|+|+|++.+.+... .....+++||+||||++.+.. ......+..++ ..+.++||||
T Consensus 113 ~v~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~~~~l~LTaT 186 (500)
T 1z63_A 113 RFAVFHEDRSKIKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SKYRIALTGT 186 (500)
T ss_dssp CEEECSSSTTSCCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EEEEEEECSS
T ss_pred eEEEEecCchhccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-cCcEEEEecC
Confidence 677777765422 357899999999865432 223468999999999998653 33445555564 4678999999
Q ss_pred CC--ChHHHHHHHHhhcCC--------------------------------CeEEEecCCC-----CCcceeeeeccCCC
Q 002357 223 MS--NATQFAEWICHLHKQ--------------------------------PCHVVYTDFR-----PTPLQHYVFPVGGS 263 (931)
Q Consensus 223 ~~--n~~e~~~~l~~~~~~--------------------------------~~~v~~~~~r-----p~pl~~~~~~~~~~ 263 (931)
+. +..++...+...... ++.+..+... ..|....
T Consensus 187 P~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~------- 259 (500)
T 1z63_A 187 PIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIE------- 259 (500)
T ss_dssp CSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEE-------
T ss_pred CCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeE-------
Confidence 83 233443333222110 1111111000 0111000
Q ss_pred ceeEeeCccchhchhhHHHHHHHHHhhh----------------------cCCCcCCCCCCCCccCCCCCCCCCCHHHHH
Q 002357 264 GLYLVVDEKEQFREDNFVKLQDTFLKQK----------------------IGGRRENGKASGRMAKGGSGSGGSDIFKIV 321 (931)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 321 (931)
....++.. ......|........... ...+..... .........++..+.
T Consensus 260 -~~v~~~l~-~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~------~~~~~~~s~K~~~l~ 331 (500)
T 1z63_A 260 -TNVYCNLT-PEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKG------GEQSVRRSGKMIRTM 331 (500)
T ss_dssp -EEEEECCC-HHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHC------SCCCSTTCHHHHHHH
T ss_pred -EEEEcCCC-HHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcC------ccchhhcchhHHHHH
Confidence 00001100 111111111111110000 000000000 000011233445555
Q ss_pred HHHHHc--CCCcEEEEecCHHHHHHHHHHhccC-CCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceec
Q 002357 322 KMIMER--KFQPVIVFSFSRRECEQHAMSMSKL-DFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVH 398 (931)
Q Consensus 322 ~~l~~~--~~~~~IVF~~sr~~~~~la~~L~~~-~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~ 398 (931)
+.+.+. .+.++||||.++..++.++..|... ++ .+..+
T Consensus 332 ~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~---------------------------------------~~~~~ 372 (500)
T 1z63_A 332 EIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNT---------------------------------------EVPFL 372 (500)
T ss_dssp HHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTC---------------------------------------CCCEE
T ss_pred HHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCC---------------------------------------CeEEE
Confidence 555442 5679999999999999999888652 33 26789
Q ss_pred cCCCCHHHHHHHHHHHhcC-Cce-EEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCce
Q 002357 399 HSGLLPVIKELVELLFQEG-LVK-ALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRG 476 (931)
Q Consensus 399 hg~l~~~~R~~v~~~F~~g-~i~-vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g 476 (931)
||++++.+|+.+++.|++| ..+ +|++|+++++|+|+|++++|| .||+ |.++..|.|++||++|.|+.+..
T Consensus 373 ~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi----~~d~----~~~~~~~~Q~~gR~~R~Gq~~~v 444 (500)
T 1z63_A 373 YGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI----HFDR----WWNPAVEDQATDRVYRIGQTRNV 444 (500)
T ss_dssp ETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEE----ESSC----CSCC---CHHHHTTTTTTTTSCE
T ss_pred ECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEE----EeCC----CCCcchHHHHHHHHHHcCCCCee
Confidence 9999999999999999988 565 789999999999999999999 6777 88889999999999999998888
Q ss_pred EEEEEeCCc
Q 002357 477 ICIIMVDEQ 485 (931)
Q Consensus 477 ~~ii~~~~~ 485 (931)
.++.++...
T Consensus 445 ~v~~lv~~~ 453 (500)
T 1z63_A 445 IVHKLISVG 453 (500)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEeCC
Confidence 777777655
No 55
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.95 E-value=8.7e-27 Score=289.18 Aligned_cols=410 Identities=16% Similarity=0.105 Sum_probs=241.7
Q ss_pred CCCCHHHHHHHHHHhc--------------CCcEEEEcCCCCCcHHHHHHHHHHHHh---CCCEEEEEcCchhhHHHHHH
Q 002357 75 FELDPFQRVSVACLER--------------NESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYR 137 (931)
Q Consensus 75 f~l~~~Q~~ai~~l~~--------------g~~vlv~apTGsGKTl~~~l~i~~~l~---~~~rvl~l~P~kaL~~Q~~~ 137 (931)
+.|+|+|.+|++.+.. +++++++++||||||+++ ++++..+. ...++||++|+++|+.|+.+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 4599999999998743 368999999999999998 44445553 23699999999999999999
Q ss_pred HHHHhcCCeEEEecccc-------c-CCCCCeeEecHHHHHHHHhcCc--cccCcccEEEEeccccCCCCCchHHHHHHH
Q 002357 138 ELHQEFKDVGLMTGDVT-------L-SPNASCLVMTTEILRGMLYRGS--EVLKEVAWVIFDEIHYMKDRERGVVWEESI 207 (931)
Q Consensus 138 ~l~~~~~~vg~~tGd~~-------~-~~~~~IlV~Tpe~L~~~l~~~~--~~l~~l~~vViDEaH~l~~~~~g~~~~~ii 207 (931)
.|..+.+.. +.|..+ + ....+|+|+||++|..++.... ..+....+||+||||++.. +..+..+.
T Consensus 349 ~f~~f~~~~--v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~~~~~~I~ 423 (1038)
T 2w00_A 349 EYQRFSPDS--VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---GEAQKNLK 423 (1038)
T ss_dssp HHHTTSTTC--SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---HHHHHHHH
T ss_pred HHHHhcccc--cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---hHHHHHHH
Confidence 998876531 122211 1 3468999999999998775432 2356789999999999863 44566666
Q ss_pred HhcCCCceEEEeccCCCChH------HHHHHHHhhcCCCeEEEec-----CCCCCcceeeeeccCCCceeEeeCccchhc
Q 002357 208 IFLPPAIKMVFLSATMSNAT------QFAEWICHLHKQPCHVVYT-----DFRPTPLQHYVFPVGGSGLYLVVDEKEQFR 276 (931)
Q Consensus 208 ~~l~~~~q~v~lSAT~~n~~------e~~~~l~~~~~~~~~v~~~-----~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~ 276 (931)
..+| +.++++|||||.... ....+++ .+++.+.- +.--.|....... +.. .+.
T Consensus 424 ~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG----~~i~~Y~l~~AI~dg~l~p~~v~y~~---------v~~--~~~ 487 (1038)
T 2w00_A 424 KKFK-RYYQFGFTGTPIFPENALGSETTASVFG----RELHSYVITDAIRDEKVLKFKVDYND---------VRP--QFK 487 (1038)
T ss_dssp HHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHC----SEEEEECHHHHHHHTSSCCEEEEECC---------CCG--GGH
T ss_pred HhCC-cccEEEEeCCccccccchhhhHHHHHhC----CeeEeecHHHHHhCCCcCCeEEEEEe---------ccc--hhh
Confidence 6776 579999999997432 2333333 22222210 1111222111100 000 000
Q ss_pred hhh---HHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHH----HHHHHc--------CCCcEEEEecCHHH
Q 002357 277 EDN---FVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIV----KMIMER--------KFQPVIVFSFSRRE 341 (931)
Q Consensus 277 ~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll----~~l~~~--------~~~~~IVF~~sr~~ 341 (931)
... -......+.. . ........+..++ ...... .+.++||||.|+..
T Consensus 488 ~~~~e~d~~~~~~i~~---------~---------~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~ 549 (1038)
T 2w00_A 488 SLETETDEKKLSAAEN---------Q---------QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDA 549 (1038)
T ss_dssp HHHTCCCHHHHHHTCS---------T---------TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHH
T ss_pred hccccccHHHHHHHHH---------H---------HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHH
Confidence 000 0000000000 0 0000111222333 322221 23579999999999
Q ss_pred HHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccc-eeccCC----------C--------
Q 002357 342 CEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGI-AVHHSG----------L-------- 402 (931)
Q Consensus 342 ~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi-~~~hg~----------l-------- 402 (931)
|..++..|.+.+. +....... ... ..+ .++||+ +
T Consensus 550 A~~~~~~l~~~~~--------------~~~~~~~~-~~~------------~k~avv~s~~~~~~~~~~G~~~~e~~~~~ 602 (1038)
T 2w00_A 550 AKAYYATFKRLQE--------------EAANKSAT-YKP------------LRIATIFSFAANEEQNAIGEISDETFDTS 602 (1038)
T ss_dssp HHHHHHHHHHHHH--------------HHTTTSSS-CCC------------CCEEEECCCCC------CCCCCCCCSCGG
T ss_pred HHHHHHHHHhhhh--------------hhcccccc-ccc------------CcEEEEEeCCCcccccccccccccccccc
Confidence 9999999865320 00000000 000 001 122321 1
Q ss_pred --C-----------------------------HHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCC
Q 002357 403 --L-----------------------------PVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDS 451 (931)
Q Consensus 403 --~-----------------------------~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~ 451 (931)
+ +..|+.+.+.|++|.++|||+|+.+.+|+|+|.+++++ +|.
T Consensus 603 ~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l~tly-----lDk-- 675 (1038)
T 2w00_A 603 AMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLNTLF-----VDK-- 675 (1038)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTEEEEE-----EES--
T ss_pred ccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccccEEE-----Ecc--
Confidence 1 23588999999999999999999999999999996654 454
Q ss_pred CcccCHHHHHHhhhccCCCCCC--CceEEEEEeCCccCHHHHHhhhhccCCChHHHHHhhHHHHHhhc-------cchhH
Q 002357 452 HRYIGSGEYIQMSGRAGRRGKD--DRGICIIMVDEQMEMNTLKDMVLEGQFTAEHVIKNSFHQFQYEK-------ALPDI 522 (931)
Q Consensus 452 ~~~~s~~~y~Qr~GRaGR~G~~--~~g~~ii~~~~~~~~~~l~~l~~~~~~~~e~~l~~sf~~~~~~~-------~~~~~ 522 (931)
|.+...|+|++||+||.+.+ ..|.++-+.+...+....-++..+. -....++..+|.+|-..- ..+.+
T Consensus 676 --pl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~~~~l~~Al~~y~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (1038)
T 2w00_A 676 --NLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDLERSTIDAITLFGDK-NTKNVVLEKSYTEYMEGFTDAATGEAKRGF 752 (1038)
T ss_dssp --CCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCCHHHHHHHHHHTSCS-SHHHHHBCCCHHHHHHCEECTTTCCEECCH
T ss_pred --CCCccceeehhhccCcCCCCCCCcEEEEEccccHHHHHHHHHHHhCC-CCcCceehhhhHHHHHhhcccccccccccH
Confidence 88899999999999999863 4588887776432222222222222 112334456777664422 12334
Q ss_pred HHHHHHHHHHHh-hcccCChhhHHHHHHHHHHHHHHHHHH
Q 002357 523 GKKVSKLEEEAA-SLDASGEAEVAEYHKLKLDIAQLEKKL 561 (931)
Q Consensus 523 ~~~l~~l~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~ 561 (931)
...+.++...+. ...+..+.+...|.++-.++.++...+
T Consensus 753 ~~~~~~l~~~~~~~~~i~~~~~~~~f~~~f~~~~~~~~~l 792 (1038)
T 2w00_A 753 MTVVSELEQRFPDPTSIESEKEKKDFVKLFGEYLRAENIL 792 (1038)
T ss_dssp HHHHHHHHHHCCCSSSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 445555554442 122345667777777766665555443
No 56
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.95 E-value=7.5e-26 Score=272.50 Aligned_cols=348 Identities=16% Similarity=0.151 Sum_probs=218.2
Q ss_pred CCCCCHHHHHHHHHH---------hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCC-------CEEEEEcCchhhHHHHHH
Q 002357 74 SFELDPFQRVSVACL---------ERNESVLVSAHTSAGKTAVAEYAIAMAFRDK-------QRVIYTSPLKALSNQKYR 137 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~l---------~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~-------~rvl~l~P~kaL~~Q~~~ 137 (931)
...|+|||.+++..+ ..+.+.+++.+||+|||+++...+...+..+ .++||++|+ .|+.||.+
T Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHH
Confidence 446999999999887 3456799999999999999877776665432 469999997 89999999
Q ss_pred HHHHhcCC---eEEEeccccc---------------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCc
Q 002357 138 ELHQEFKD---VGLMTGDVTL---------------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRER 199 (931)
Q Consensus 138 ~l~~~~~~---vg~~tGd~~~---------------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~ 199 (931)
++.++++. +..+.|+... ....+|+|+|++.+...... .....+++||+||||++.+..
T Consensus 132 E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~--l~~~~~~~vI~DEaH~ikn~~- 208 (644)
T 1z3i_X 132 EVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV--LHKGKVGLVICDEGHRLKNSD- 208 (644)
T ss_dssp HHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT--TTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHH--hhcCCccEEEEECceecCChh-
Confidence 99999762 3444444321 12478999999999765422 223478999999999998653
Q ss_pred hHHHHHHHHhcCCCceEEEeccCCC-Ch-HHHH---HHHHh------------hc-------C-----------------
Q 002357 200 GVVWEESIIFLPPAIKMVFLSATMS-NA-TQFA---EWICH------------LH-------K----------------- 238 (931)
Q Consensus 200 g~~~~~ii~~l~~~~q~v~lSAT~~-n~-~e~~---~~l~~------------~~-------~----------------- 238 (931)
......+..++ ..+.++||||+- |. .++- +|+.- +. .
T Consensus 209 -~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 209 -NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp -HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred -hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 33444445554 457899999983 22 2211 11110 00 0
Q ss_pred -----CCeEEEec-----CCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHH----------------------HH
Q 002357 239 -----QPCHVVYT-----DFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQ----------------------DT 286 (931)
Q Consensus 239 -----~~~~v~~~-----~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~ 286 (931)
.++.+..+ ..-|....+.++ .-.. ......|.... ..
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~--------~~ls---~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~ 355 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKIEQVVC--------CNLT---PLQKELYKLFLKQAKPVESLQTGKISVSSLSSITS 355 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEEEEEEE--------ECCC---HHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCceEEEEE--------eCCC---HHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHH
Confidence 00000000 000111111110 0000 00000111110 00
Q ss_pred HHh---h-------hcCCCcCCCCC----CCCc-cCCCCCCCCC---CHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHH
Q 002357 287 FLK---Q-------KIGGRRENGKA----SGRM-AKGGSGSGGS---DIFKIVKMIMERKFQPVIVFSFSRRECEQHAMS 348 (931)
Q Consensus 287 l~~---~-------~~~~~~~~~~~----~~~~-~~~~~~~~~~---~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~ 348 (931)
+.. . ........... .... .......... .+..++..+....+.++||||+++..++.+...
T Consensus 356 Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~ 435 (644)
T 1z3i_X 356 LKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKL 435 (644)
T ss_dssp HHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHH
Confidence 000 0 00000000000 0000 0000000011 233444444445678999999999999999998
Q ss_pred hccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCce---EEEec
Q 002357 349 MSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVK---ALFAT 425 (931)
Q Consensus 349 L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i~---vLvaT 425 (931)
|...++. +..+||++++.+|+.+++.|++|... +|++|
T Consensus 436 l~~~g~~---------------------------------------~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st 476 (644)
T 1z3i_X 436 CRNRRYL---------------------------------------YVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSS 476 (644)
T ss_dssp HHHHTCC---------------------------------------EEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEG
T ss_pred HHHCCCC---------------------------------------EEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEec
Confidence 8765543 57899999999999999999998754 89999
Q ss_pred chhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 426 ETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 426 ~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
.++++|||++++++|| .||+ |.++..|.|++||++|.|+.....++.++...
T Consensus 477 ~a~g~Glnl~~a~~Vi----~~d~----~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 477 KAGGCGLNLIGANRLV----MFDP----DWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp GGSCTTCCCTTEEEEE----ECSC----CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred ccccCCcccccCCEEE----EECC----CCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 9999999999999999 7787 89999999999999999998777888777665
No 57
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.8e-26 Score=279.20 Aligned_cols=358 Identities=15% Similarity=0.143 Sum_probs=226.6
Q ss_pred CCCCCHHHHHHHHHHh----cCCcEEEEcCCCCCcHHHHHHHHHHHH---hCCCEEEEEcCchhhHHHHHHHHHHhcC--
Q 002357 74 SFELDPFQRVSVACLE----RNESVLVSAHTSAGKTAVAEYAIAMAF---RDKQRVIYTSPLKALSNQKYRELHQEFK-- 144 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~l~----~g~~vlv~apTGsGKTl~~~l~i~~~l---~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-- 144 (931)
+.+|+|||.+++..+. .+.+++++.+||+|||+++...+...+ ...+++||++| ..|+.||.++|.++++
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~ 312 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDL 312 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTC
T ss_pred CCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCc
Confidence 5679999999998664 889999999999999998866655443 34678999999 6899999999999987
Q ss_pred CeEEEecccc-------------------cCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHH
Q 002357 145 DVGLMTGDVT-------------------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEE 205 (931)
Q Consensus 145 ~vg~~tGd~~-------------------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ 205 (931)
.+.+++|+.. .....+|+|+|++.+...... ..-..+++||+||||++.+. ......
T Consensus 313 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~--~s~~~~ 388 (800)
T 3mwy_W 313 NCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNA--ESSLYE 388 (800)
T ss_dssp CEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCS--SSHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCc--hhHHHH
Confidence 5666677543 123578999999998764322 11236899999999999764 344555
Q ss_pred HHHhcCCCceEEEeccCC--CChHHHHHHHHhhcCCCeEEEec-CCCCC-------------cceeeeecc---------
Q 002357 206 SIIFLPPAIKMVFLSATM--SNATQFAEWICHLHKQPCHVVYT-DFRPT-------------PLQHYVFPV--------- 260 (931)
Q Consensus 206 ii~~l~~~~q~v~lSAT~--~n~~e~~~~l~~~~~~~~~v~~~-~~rp~-------------pl~~~~~~~--------- 260 (931)
.+..++ ....++||||+ .+..++...+..+.......... ..... -+..+++..
T Consensus 389 ~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~L 467 (800)
T 3mwy_W 389 SLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSL 467 (800)
T ss_dssp HHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTS
T ss_pred HHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhcc
Confidence 555554 45678999998 34456555555443221110000 00000 000000000
Q ss_pred CCCc-eeEeeCccchhchhhHHHHHH----------------------HHHhhhcCCCcCCCCC----CCCccCCCCC--
Q 002357 261 GGSG-LYLVVDEKEQFREDNFVKLQD----------------------TFLKQKIGGRRENGKA----SGRMAKGGSG-- 311 (931)
Q Consensus 261 ~~~~-~~~~~~~~~~~~~~~~~~~~~----------------------~l~~~~~~~~~~~~~~----~~~~~~~~~~-- 311 (931)
+... ....+... ......|..... .+.... .++...... ......+...
T Consensus 468 P~k~~~~v~v~ls-~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~-~hp~l~~~~~~~~~~~~~~~~~~~~ 545 (800)
T 3mwy_W 468 PSKTERILRVELS-DVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKAS-NHPYLFDNAEERVLQKFGDGKMTRE 545 (800)
T ss_dssp CCEEEEEEEECCC-HHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHH-HCGGGSSSHHHHHCCCC----CCSH
T ss_pred CCcEEEEEEeCCC-HHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHh-cChhhhcchHHHHHHhcccccccHH
Confidence 0000 00001100 011111111111 010000 000000000 0000000000
Q ss_pred -------CCCCCHHHHHHHHHH--cCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCCh
Q 002357 312 -------SGGSDIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLP 382 (931)
Q Consensus 312 -------~~~~~~~~ll~~l~~--~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~ 382 (931)
....++..+.+.+.. ..+.++||||..+..++.+...|...++.
T Consensus 546 ~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~--------------------------- 598 (800)
T 3mwy_W 546 NVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGIN--------------------------- 598 (800)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCC---------------------------
T ss_pred HHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCC---------------------------
Confidence 012233344444433 25679999999999999999999765554
Q ss_pred hHHhHHHHhhccceeccCCCCHHHHHHHHHHHhcCCc---eEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHH
Q 002357 383 AIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLV---KALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGE 459 (931)
Q Consensus 383 ~~~~l~~~l~~gi~~~hg~l~~~~R~~v~~~F~~g~i---~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~ 459 (931)
+..+||+++..+|+.+++.|++|.. .+|++|.+++.|||+|++++|| .||+ +.++..
T Consensus 599 ------------~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI----~~D~----~wnp~~ 658 (800)
T 3mwy_W 599 ------------FQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVV----IFDS----DWNPQA 658 (800)
T ss_dssp ------------CEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEE----ESSC----CSCSHH
T ss_pred ------------EEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEE----EecC----CCChhh
Confidence 5789999999999999999998654 4999999999999999999999 6777 889999
Q ss_pred HHHhhhccCCCCCCCceEEEEEeCCcc
Q 002357 460 YIQMSGRAGRRGKDDRGICIIMVDEQM 486 (931)
Q Consensus 460 y~Qr~GRaGR~G~~~~g~~ii~~~~~~ 486 (931)
+.|++||++|.|+.....++.++....
T Consensus 659 ~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 659 DLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp HHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred HHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 999999999999988888888887653
No 58
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.94 E-value=7.9e-27 Score=247.06 Aligned_cols=175 Identities=15% Similarity=0.133 Sum_probs=151.1
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh--------CCCEEEEEcCchhhHHHHHHHHH
Q 002357 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR--------DKQRVIYTSPLKALSNQKYRELH 140 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~--------~~~rvl~l~P~kaL~~Q~~~~l~ 140 (931)
...++|. |+++|.++++.+.+|++++++||||||||++|.++++..+. .+.++||++||++|+.|+++.++
T Consensus 44 l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 123 (242)
T 3fe2_A 44 IARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAA 123 (242)
T ss_dssp HHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHH
Confidence 3457888 99999999999999999999999999999999999988764 36789999999999999999988
Q ss_pred HhcC----CeEEEecccccC-------CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHh
Q 002357 141 QEFK----DVGLMTGDVTLS-------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF 209 (931)
Q Consensus 141 ~~~~----~vg~~tGd~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~ 209 (931)
.++. .++.++|+.+.. .+++|+|+||++|.+++.++...+.++++||+||||++.+++++..+..++..
T Consensus 124 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~ 203 (242)
T 3fe2_A 124 EYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQ 203 (242)
T ss_dssp HHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTT
T ss_pred HHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHh
Confidence 8753 677888876532 35899999999999999888778899999999999999999999999999999
Q ss_pred cCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEec
Q 002357 210 LPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYT 246 (931)
Q Consensus 210 l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~ 246 (931)
+++..|++++|||+++.. .+++.....+++.+...
T Consensus 204 ~~~~~q~~~~SAT~~~~~--~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 204 IRPDRQTLMWSATWPKEV--RQLAEDFLKDYIHINIG 238 (242)
T ss_dssp SCSSCEEEEEESCCCHHH--HHHHHHHCSSCEEEEEC
T ss_pred CCccceEEEEEeecCHHH--HHHHHHHCCCCEEEEec
Confidence 999999999999998654 36666666666666543
No 59
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=243.62 Aligned_cols=172 Identities=17% Similarity=0.161 Sum_probs=145.7
Q ss_pred ccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh---------CCCEEEEEcCchhhHHHHHHHHH
Q 002357 71 KTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---------DKQRVIYTSPLKALSNQKYRELH 140 (931)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~---------~~~rvl~l~P~kaL~~Q~~~~l~ 140 (931)
..++|. |+++|.++++.+.+|++++++||||+|||++|+++++..+. .+.++||++||++|++|++++++
T Consensus 36 ~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 115 (228)
T 3iuy_A 36 IRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECS 115 (228)
T ss_dssp HHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHH
Confidence 345775 99999999999999999999999999999999999887763 56789999999999999999999
Q ss_pred HhcC---CeEEEecccccC-------CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc
Q 002357 141 QEFK---DVGLMTGDVTLS-------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL 210 (931)
Q Consensus 141 ~~~~---~vg~~tGd~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l 210 (931)
.+.. .+..++|+.... .+++|+|+||+++.+++.+....++++++||+||||++.+++++..+..++..+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~ 195 (228)
T 3iuy_A 116 KYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDV 195 (228)
T ss_dssp HHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHS
T ss_pred HhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHhC
Confidence 9753 677788876643 357999999999999988877778999999999999999999999999999999
Q ss_pred CCCceEEEeccCCCChHHHHHHHHhhcCCCeEEE
Q 002357 211 PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 244 (931)
Q Consensus 211 ~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~ 244 (931)
+++.|++++|||+++.. .+++.....+|..+.
T Consensus 196 ~~~~~~l~~SAT~~~~~--~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 196 RPDRQTVMTSATWPDTV--RQLALSYLKDPMIVY 227 (228)
T ss_dssp CSSCEEEEEESCCCHHH--HHHHHTTCSSCEEEE
T ss_pred CcCCeEEEEEeeCCHHH--HHHHHHHCCCCEEEe
Confidence 99999999999998654 356666666665543
No 60
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.94 E-value=2.4e-26 Score=239.52 Aligned_cols=177 Identities=18% Similarity=0.216 Sum_probs=151.6
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh---CCCEEEEEcCchhhHHHHHHHHHHhcC-
Q 002357 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEFK- 144 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~---~~~rvl~l~P~kaL~~Q~~~~l~~~~~- 144 (931)
...++|. |+++|.++++.+.+|++++++||||+|||++|.++++..+. .+.++||++||++|++|+++++++++.
T Consensus 19 l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 98 (219)
T 1q0u_A 19 IKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKF 98 (219)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhh
Confidence 3456776 99999999999999999999999999999999999998874 357899999999999999999988753
Q ss_pred -------CeEEEeccccc-------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc
Q 002357 145 -------DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL 210 (931)
Q Consensus 145 -------~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l 210 (931)
.++.++|+... ..+++|+|+||+++.+++.++...+.++++||+||||++.+++++..+..++..+
T Consensus 99 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~ 178 (219)
T 1q0u_A 99 CPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARM 178 (219)
T ss_dssp SCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTS
T ss_pred cccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhC
Confidence 46677777642 2468999999999999988877778899999999999999999999999999999
Q ss_pred CCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEecCC
Q 002357 211 PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDF 248 (931)
Q Consensus 211 ~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~~~ 248 (931)
++..|++++|||+++. +.+|+.....+|..+.....
T Consensus 179 ~~~~~~l~~SAT~~~~--~~~~~~~~~~~p~~~~~~~~ 214 (219)
T 1q0u_A 179 PKDLQMLVFSATIPEK--LKPFLKKYMENPTFVHVLEH 214 (219)
T ss_dssp CTTCEEEEEESCCCGG--GHHHHHHHCSSCEEEECC--
T ss_pred CcccEEEEEecCCCHH--HHHHHHHHcCCCeEEEeecc
Confidence 9999999999999864 45888888888877665543
No 61
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=9.1e-26 Score=232.64 Aligned_cols=171 Identities=18% Similarity=0.260 Sum_probs=147.8
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh---CCCEEEEEcCchhhHHHHHHHHHHhcC-
Q 002357 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEFK- 144 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~---~~~rvl~l~P~kaL~~Q~~~~l~~~~~- 144 (931)
...++|. |+|+|.++++.+.+|+++++.||||+|||++|.++++..+. .+.++||++|+++|++|+++.+..++.
T Consensus 18 l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 97 (206)
T 1vec_A 18 IFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKH 97 (206)
T ss_dssp HHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTT
T ss_pred HHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhh
Confidence 3457886 99999999999999999999999999999999999988764 356899999999999999999988763
Q ss_pred ----CeEEEeccccc-------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCC
Q 002357 145 ----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPA 213 (931)
Q Consensus 145 ----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~ 213 (931)
.++.++|+... ...++|+|+||+++.+++.++...+.++++||+||||++.+.+++..++.++..+++.
T Consensus 98 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~ 177 (206)
T 1vec_A 98 MGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 177 (206)
T ss_dssp SSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTT
T ss_pred cCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCcc
Confidence 57778887653 3578999999999999998877778899999999999999989999999999999999
Q ss_pred ceEEEeccCCCChHHHHHHHHhhcCCCeE
Q 002357 214 IKMVFLSATMSNATQFAEWICHLHKQPCH 242 (931)
Q Consensus 214 ~q~v~lSAT~~n~~e~~~~l~~~~~~~~~ 242 (931)
.|++++|||+++. ..+++.....+|..
T Consensus 178 ~~~l~~SAT~~~~--~~~~~~~~l~~p~~ 204 (206)
T 1vec_A 178 RQILLYSATFPLS--VQKFMNSHLEKPYE 204 (206)
T ss_dssp CEEEEEESCCCHH--HHHHHHHHCSSCEE
T ss_pred ceEEEEEeeCCHH--HHHHHHHHcCCCeE
Confidence 9999999999854 44666666665554
No 62
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=245.31 Aligned_cols=172 Identities=15% Similarity=0.147 Sum_probs=144.1
Q ss_pred ccCCCC-CCHHHHHHHHHHhcC--CcEEEEcCCCCCcHHHHHHHHHHHHhC---CCEEEEEcCchhhHHHHHHHHHHhcC
Q 002357 71 KTYSFE-LDPFQRVSVACLERN--ESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYRELHQEFK 144 (931)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~~g--~~vlv~apTGsGKTl~~~l~i~~~l~~---~~rvl~l~P~kaL~~Q~~~~l~~~~~ 144 (931)
..++|. |+++|.++++.+..| ++++++||||||||++|++|++..+.. +.++||++||++|+.|+++.++.+..
T Consensus 108 ~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~ 187 (300)
T 3fmo_B 108 YAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGK 187 (300)
T ss_dssp HHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHh
Confidence 457887 999999999999887 999999999999999999999988743 45899999999999999999988753
Q ss_pred -----CeEEEecccccC----CCCCeeEecHHHHHHHHhc-CccccCcccEEEEeccccCCC-CCchHHHHHHHHhcCCC
Q 002357 145 -----DVGLMTGDVTLS----PNASCLVMTTEILRGMLYR-GSEVLKEVAWVIFDEIHYMKD-RERGVVWEESIIFLPPA 213 (931)
Q Consensus 145 -----~vg~~tGd~~~~----~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~~vViDEaH~l~~-~~~g~~~~~ii~~l~~~ 213 (931)
.++...|+.... ..++|+|+||++|.+++.+ +...++++++|||||||+|.+ .+++..+..++..+++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~ 267 (300)
T 3fmo_B 188 FYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRN 267 (300)
T ss_dssp TSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTT
T ss_pred hCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCC
Confidence 566777776643 3578999999999999865 445688999999999999987 67888888888899999
Q ss_pred ceEEEeccCCCChHHHHHHHHhhcCCCeEEE
Q 002357 214 IKMVFLSATMSNATQFAEWICHLHKQPCHVV 244 (931)
Q Consensus 214 ~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~ 244 (931)
.|++++|||+++... .+...+..+|..+.
T Consensus 268 ~q~i~~SAT~~~~v~--~~a~~~l~~p~~i~ 296 (300)
T 3fmo_B 268 CQMLLFSATFEDSVW--KFAQKVVPDPNVIK 296 (300)
T ss_dssp CEEEEEESCCCHHHH--HHHHHHSSSCEEEE
T ss_pred CEEEEEeccCCHHHH--HHHHHHCCCCeEEE
Confidence 999999999997543 55555556665554
No 63
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.93 E-value=6.2e-26 Score=239.36 Aligned_cols=172 Identities=21% Similarity=0.217 Sum_probs=144.5
Q ss_pred ccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh---CCCEEEEEcCchhhHHHHHHHHHHhcC--
Q 002357 71 KTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEFK-- 144 (931)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~---~~~rvl~l~P~kaL~~Q~~~~l~~~~~-- 144 (931)
..++|. |+++|.++++.+.+|++++++||||+|||++|.++++..+. .+.++||++|+++|++|+++.++.++.
T Consensus 46 ~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 125 (237)
T 3bor_A 46 YAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYM 125 (237)
T ss_dssp HHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTT
T ss_pred HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhc
Confidence 457887 99999999999999999999999999999999999998874 467999999999999999999998865
Q ss_pred --CeEEEecccccCC--------CCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCc
Q 002357 145 --DVGLMTGDVTLSP--------NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAI 214 (931)
Q Consensus 145 --~vg~~tGd~~~~~--------~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~ 214 (931)
.+..+.|+..... .++|+|+||+++.+++.++...+.++++||+||||++.+++++..+..++..++...
T Consensus 126 ~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~ 205 (237)
T 3bor_A 126 GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSI 205 (237)
T ss_dssp TCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCC
Confidence 5666777765422 389999999999999988777788999999999999998889999999999999999
Q ss_pred eEEEeccCCCChHHHHHHHHhhcCCCeEEE
Q 002357 215 KMVFLSATMSNATQFAEWICHLHKQPCHVV 244 (931)
Q Consensus 215 q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~ 244 (931)
|++++|||+++.. .+++.....+|..+.
T Consensus 206 ~~i~~SAT~~~~~--~~~~~~~l~~p~~i~ 233 (237)
T 3bor_A 206 QVVLLSATMPTDV--LEVTKKFMRDPIRIL 233 (237)
T ss_dssp EEEEECSSCCHHH--HHHHHHHCSSCEEEC
T ss_pred eEEEEEEecCHHH--HHHHHHHCCCCEEEE
Confidence 9999999998553 355555555565543
No 64
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.93 E-value=8.1e-26 Score=237.35 Aligned_cols=174 Identities=16% Similarity=0.148 Sum_probs=149.4
Q ss_pred hhhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh---CCCEEEEEcCchhhHHHHHHHHHHhc
Q 002357 68 EMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEF 143 (931)
Q Consensus 68 ~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~---~~~rvl~l~P~kaL~~Q~~~~l~~~~ 143 (931)
.....++|. |+++|.++++.+.+|++++++||||+|||++|.++++..+. .+.++||++|+++|++|++++++.+.
T Consensus 37 ~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 116 (230)
T 2oxc_A 37 EGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIG 116 (230)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 334567897 99999999999999999999999999999999999988763 35799999999999999999999885
Q ss_pred C-----CeEEEeccccc------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCC-chHHHHHHHHhcC
Q 002357 144 K-----DVGLMTGDVTL------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRE-RGVVWEESIIFLP 211 (931)
Q Consensus 144 ~-----~vg~~tGd~~~------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~-~g~~~~~ii~~l~ 211 (931)
. .++.++|+... ..+++|+|+||+++.+++.++...+.++++||+||||++.+++ ++..+..++..++
T Consensus 117 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~ 196 (230)
T 2oxc_A 117 IKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLP 196 (230)
T ss_dssp TTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSC
T ss_pred cccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCC
Confidence 3 57888887653 2468999999999999988777778899999999999998886 8899999999999
Q ss_pred CCceEEEeccCCCChHHHHHHHHhhcCCCeEE
Q 002357 212 PAIKMVFLSATMSNATQFAEWICHLHKQPCHV 243 (931)
Q Consensus 212 ~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v 243 (931)
...|++++|||+++. +.+++..+.++|..+
T Consensus 197 ~~~~~l~lSAT~~~~--~~~~~~~~~~~p~~i 226 (230)
T 2oxc_A 197 ASKQMLAVSATYPEF--LANALTKYMRDPTFV 226 (230)
T ss_dssp SSCEEEEEESCCCHH--HHHHHTTTCSSCEEE
T ss_pred CCCeEEEEEeccCHH--HHHHHHHHcCCCeEE
Confidence 999999999999754 557777766666554
No 65
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.93 E-value=1.5e-25 Score=231.08 Aligned_cols=172 Identities=21% Similarity=0.207 Sum_probs=147.3
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh------CCCEEEEEcCchhhHHHHHHHHHHh
Q 002357 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR------DKQRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~------~~~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
...++|. |+|+|.++++.+.+|+++++.+|||+|||++|.++++..+. .+.+++|++|+++|+.|+++++..+
T Consensus 16 l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 95 (207)
T 2gxq_A 16 LHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAV 95 (207)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHH
Confidence 3457875 99999999999999999999999999999999999998863 4678999999999999999999999
Q ss_pred cC--CeEEEecccccC-------CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCC
Q 002357 143 FK--DVGLMTGDVTLS-------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPA 213 (931)
Q Consensus 143 ~~--~vg~~tGd~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~ 213 (931)
++ .++.++|+.... .+++|+|+||+++.+++.++...+.++++||+||||++.+.+++..+..++..+++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~ 175 (207)
T 2gxq_A 96 APHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPS 175 (207)
T ss_dssp CTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred hhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCcc
Confidence 76 677788876532 368999999999999988877778999999999999999888999999999999999
Q ss_pred ceEEEeccCCCChHHHHHHHHhhcCCCeEE
Q 002357 214 IKMVFLSATMSNATQFAEWICHLHKQPCHV 243 (931)
Q Consensus 214 ~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v 243 (931)
.|++++|||+++..+ +.......+|..+
T Consensus 176 ~~~i~~SAT~~~~~~--~~~~~~~~~p~~i 203 (207)
T 2gxq_A 176 RQTLLFSATLPSWAK--RLAERYMKNPVLI 203 (207)
T ss_dssp SEEEEECSSCCHHHH--HHHHHHCSSCEEE
T ss_pred CeEEEEEEecCHHHH--HHHHHHcCCCeEE
Confidence 999999999986542 4444444555544
No 66
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.93 E-value=1.4e-25 Score=234.44 Aligned_cols=172 Identities=21% Similarity=0.244 Sum_probs=144.9
Q ss_pred ccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh---CCCEEEEEcCchhhHHHHHHHHHHhcC--
Q 002357 71 KTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEFK-- 144 (931)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~---~~~rvl~l~P~kaL~~Q~~~~l~~~~~-- 144 (931)
..++|. |+|+|.++++.+.+|+++++++|||+|||++|.++++..+. .+.++||++|+++|++|+++.+..++.
T Consensus 30 ~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 109 (224)
T 1qde_A 30 FGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM 109 (224)
T ss_dssp HHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred HHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhccc
Confidence 456886 99999999999999999999999999999999999998773 457999999999999999999998864
Q ss_pred --CeEEEecccccC------CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceE
Q 002357 145 --DVGLMTGDVTLS------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKM 216 (931)
Q Consensus 145 --~vg~~tGd~~~~------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~ 216 (931)
.++.++|+.... ..++|+|+||+++.+.+.++...+.++++||+||||++.+++++..+..++..+++..|+
T Consensus 110 ~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~ 189 (224)
T 1qde_A 110 DIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQV 189 (224)
T ss_dssp CCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEE
T ss_pred CceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeE
Confidence 567778876543 248999999999999988877778899999999999999988999999999999999999
Q ss_pred EEeccCCCChHHHHHHHHhhcCCCeEEE
Q 002357 217 VFLSATMSNATQFAEWICHLHKQPCHVV 244 (931)
Q Consensus 217 v~lSAT~~n~~e~~~~l~~~~~~~~~v~ 244 (931)
+++|||+++.. .+++.....+|..+.
T Consensus 190 i~lSAT~~~~~--~~~~~~~~~~p~~i~ 215 (224)
T 1qde_A 190 VLLSATMPNDV--LEVTTKFMRNPVRIL 215 (224)
T ss_dssp EEEESSCCHHH--HHHHHHHCSSCEEEC
T ss_pred EEEEeecCHHH--HHHHHHHCCCCEEEE
Confidence 99999998654 355555556565554
No 67
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.93 E-value=8.1e-26 Score=242.04 Aligned_cols=158 Identities=22% Similarity=0.261 Sum_probs=140.0
Q ss_pred ccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh-------CCCEEEEEcCchhhHHHHHHHHHHh
Q 002357 71 KTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-------DKQRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~-------~~~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
..++|+ |+++|.++++.+..|++++++||||||||++|+++++..+. .+.++||++||++|+.|+++.++++
T Consensus 70 ~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 149 (262)
T 3ly5_A 70 KEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKEL 149 (262)
T ss_dssp HHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 457888 99999999999999999999999999999999999988763 4788999999999999999999998
Q ss_pred cC----CeEEEecccccC-------CCCCeeEecHHHHHHHHhcCc-cccCcccEEEEeccccCCCCCchHHHHHHHHhc
Q 002357 143 FK----DVGLMTGDVTLS-------PNASCLVMTTEILRGMLYRGS-EVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL 210 (931)
Q Consensus 143 ~~----~vg~~tGd~~~~-------~~~~IlV~Tpe~L~~~l~~~~-~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l 210 (931)
+. .++.++|+.... .+++|+|+||+++.+++.+.. ..+.++++||+||||++.+++++..+..++..+
T Consensus 150 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~ 229 (262)
T 3ly5_A 150 MTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 229 (262)
T ss_dssp TTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHS
T ss_pred HhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhC
Confidence 76 567888876532 358999999999998886653 457899999999999999999999999999999
Q ss_pred CCCceEEEeccCCCChHH
Q 002357 211 PPAIKMVFLSATMSNATQ 228 (931)
Q Consensus 211 ~~~~q~v~lSAT~~n~~e 228 (931)
++..|+++||||+++..+
T Consensus 230 ~~~~q~l~~SAT~~~~v~ 247 (262)
T 3ly5_A 230 PTRRQTMLFSATQTRKVE 247 (262)
T ss_dssp CSSSEEEEECSSCCHHHH
T ss_pred CCCCeEEEEEecCCHHHH
Confidence 999999999999986653
No 68
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.93 E-value=1.6e-25 Score=236.04 Aligned_cols=173 Identities=23% Similarity=0.242 Sum_probs=145.0
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHH-------hCCCEEEEEcCchhhHHHHHHHHHH
Q 002357 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF-------RDKQRVIYTSPLKALSNQKYRELHQ 141 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l-------~~~~rvl~l~P~kaL~~Q~~~~l~~ 141 (931)
...++|. |+++|.++++.+.+|++++++||||+|||++|.++++..+ ..+.++||++|+++|++|+++.++.
T Consensus 40 l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 119 (236)
T 2pl3_A 40 LQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRK 119 (236)
T ss_dssp HHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 3456886 9999999999999999999999999999999999998776 3478999999999999999999999
Q ss_pred hcC----CeEEEecccccC------CCCCeeEecHHHHHHHHhcC-ccccCcccEEEEeccccCCCCCchHHHHHHHHhc
Q 002357 142 EFK----DVGLMTGDVTLS------PNASCLVMTTEILRGMLYRG-SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL 210 (931)
Q Consensus 142 ~~~----~vg~~tGd~~~~------~~~~IlV~Tpe~L~~~l~~~-~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l 210 (931)
++. .++.++|+.... .+++|+|+||+++.+.+.+. ...+.++++||+||||++.+++++..+..++..+
T Consensus 120 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~ 199 (236)
T 2pl3_A 120 VGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENL 199 (236)
T ss_dssp HTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTS
T ss_pred HhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhC
Confidence 874 677888876532 36899999999999887654 3557899999999999999999999999999999
Q ss_pred CCCceEEEeccCCCChHHHHHHHHhhcCCCeEEE
Q 002357 211 PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 244 (931)
Q Consensus 211 ~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~ 244 (931)
++..|+++||||+++..+ ++......+|..+.
T Consensus 200 ~~~~~~l~~SAT~~~~~~--~~~~~~~~~p~~i~ 231 (236)
T 2pl3_A 200 PKKRQTLLFSATQTKSVK--DLARLSLKNPEYVW 231 (236)
T ss_dssp CTTSEEEEEESSCCHHHH--HHHHHSCSSCEEEE
T ss_pred CCCCeEEEEEeeCCHHHH--HHHHHhCCCCEEEE
Confidence 999999999999986543 44454555565544
No 69
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.93 E-value=4.4e-25 Score=235.31 Aligned_cols=174 Identities=17% Similarity=0.174 Sum_probs=145.8
Q ss_pred ccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC------------CCEEEEEcCchhhHHHHHH
Q 002357 71 KTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD------------KQRVIYTSPLKALSNQKYR 137 (931)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~------------~~rvl~l~P~kaL~~Q~~~ 137 (931)
..++|. |+++|.++++.+.+|++++++||||+|||++|.++++..+.. +.++||++|+++|++|+++
T Consensus 39 ~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 118 (253)
T 1wrb_A 39 LLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILS 118 (253)
T ss_dssp TTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHH
Confidence 346776 999999999999999999999999999999999999887642 3589999999999999999
Q ss_pred HHHHhcC----CeEEEeccccc-------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHH
Q 002357 138 ELHQEFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES 206 (931)
Q Consensus 138 ~l~~~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~i 206 (931)
+++.+.. .+..++|+.+. ..+++|+|+||++|.+++.++...+.++++||+||||++.+++++..+..+
T Consensus 119 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i 198 (253)
T 1wrb_A 119 ESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKI 198 (253)
T ss_dssp HHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHH
T ss_pred HHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHH
Confidence 9998865 56777887653 346899999999999999887777899999999999999999999999999
Q ss_pred HHh--cCC--CceEEEeccCCCChHHHHHHHHhhcCCCeEEEec
Q 002357 207 IIF--LPP--AIKMVFLSATMSNATQFAEWICHLHKQPCHVVYT 246 (931)
Q Consensus 207 i~~--l~~--~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~ 246 (931)
+.. ++. ..|++++|||+++.. .++......++..+...
T Consensus 199 ~~~~~~~~~~~~q~l~~SAT~~~~~--~~~~~~~l~~~~~i~~~ 240 (253)
T 1wrb_A 199 IEESNMPSGINRQTLMFSATFPKEI--QKLAADFLYNYIFMTVG 240 (253)
T ss_dssp HHSSCCCCGGGCEEEEEESSCCHHH--HHHHHHHCSSCEEEEEC
T ss_pred HhhccCCCCCCcEEEEEEEeCCHHH--HHHHHHHcCCCEEEEEC
Confidence 884 444 789999999998653 35555555566655443
No 70
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.93 E-value=5.6e-24 Score=245.91 Aligned_cols=120 Identities=23% Similarity=0.227 Sum_probs=96.7
Q ss_pred CHHHHHHHHHH--cCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhc
Q 002357 316 DIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKR 393 (931)
Q Consensus 316 ~~~~ll~~l~~--~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 393 (931)
+...++..+.. ..+.|+||||+|+..|+.++..|.+.|+..
T Consensus 459 K~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~------------------------------------- 501 (822)
T 3jux_A 459 KYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPH------------------------------------- 501 (822)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCC-------------------------------------
T ss_pred HHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCE-------------------------------------
Confidence 34455555544 256899999999999999999999888764
Q ss_pred cceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCC--------CcEEEEecceecCCCCCcccCHHHHHHhhh
Q 002357 394 GIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMP--------AKTVVFTAVKKWDGDSHRYIGSGEYIQMSG 465 (931)
Q Consensus 394 gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip--------~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~G 465 (931)
.++||+..+.++..+...|+.| .|+|||++++||+|++ +..+|| +|+. |.++..|+||+|
T Consensus 502 --~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVI----nte~----Pes~r~y~qriG 569 (822)
T 3jux_A 502 --QVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCII----GTER----HESRRIDNQLRG 569 (822)
T ss_dssp --EEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEE----ESSC----CSSHHHHHHHHT
T ss_pred --EEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEE----ecCC----CCCHHHHHHhhC
Confidence 7899997777777777777777 5999999999999998 567999 7777 899999999999
Q ss_pred ccCCCCCCCceEEEEEeCC
Q 002357 466 RAGRRGKDDRGICIIMVDE 484 (931)
Q Consensus 466 RaGR~G~~~~g~~ii~~~~ 484 (931)
||||.|..|.+..|+...+
T Consensus 570 RTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 570 RAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp TSSCSSCCCEEEEEEETTS
T ss_pred ccccCCCCeeEEEEechhH
Confidence 9999999755555554443
No 71
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.93 E-value=2.8e-25 Score=235.97 Aligned_cols=175 Identities=15% Similarity=0.193 Sum_probs=147.3
Q ss_pred hhhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh---CCCEEEEEcCchhhHHHHHHHHHHhc
Q 002357 68 EMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEF 143 (931)
Q Consensus 68 ~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~---~~~rvl~l~P~kaL~~Q~~~~l~~~~ 143 (931)
.....++|. |+++|.++++.+.+|++++++||||+|||++|.++++..+. .+.++||++|+++|++|+++.++.++
T Consensus 56 ~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 135 (249)
T 3ber_A 56 EACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALG 135 (249)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 344567885 99999999999999999999999999999999999988763 24679999999999999999998875
Q ss_pred C----CeEEEeccccc-------CCCCCeeEecHHHHHHHHhc-CccccCcccEEEEeccccCCCCCchHHHHHHHHhcC
Q 002357 144 K----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYR-GSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP 211 (931)
Q Consensus 144 ~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~ 211 (931)
. .++.++|+... ..+++|+|+||+++.+++.+ ....+.++++||+||||++.+.+++..+..++..++
T Consensus 136 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~ 215 (249)
T 3ber_A 136 SSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIP 215 (249)
T ss_dssp GGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSC
T ss_pred ccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCC
Confidence 4 67788887653 35789999999999988875 334578999999999999999999999999999999
Q ss_pred CCceEEEeccCCCChHHHHHHHHhhcCCCeEEE
Q 002357 212 PAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 244 (931)
Q Consensus 212 ~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~ 244 (931)
+..|+++||||+++.. .+++.....+|..+.
T Consensus 216 ~~~~~l~~SAT~~~~v--~~~~~~~l~~p~~i~ 246 (249)
T 3ber_A 216 RDRKTFLFSATMTKKV--QKLQRAALKNPVKCA 246 (249)
T ss_dssp SSSEEEEEESSCCHHH--HHHHHHHCSSCEEEE
T ss_pred CCCeEEEEeccCCHHH--HHHHHHHCCCCEEEE
Confidence 9999999999998654 355555556666553
No 72
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.92 E-value=4.9e-25 Score=233.76 Aligned_cols=175 Identities=21% Similarity=0.242 Sum_probs=142.2
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh----CCCEEEEEcCchhhHHHHHHHHHHhcC
Q 002357 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR----DKQRVIYTSPLKALSNQKYRELHQEFK 144 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~----~~~rvl~l~P~kaL~~Q~~~~l~~~~~ 144 (931)
...++|. |+|+|.++++.+.+|++++++||||+|||++|.++++..+. .+.++||++||++|++|+++++++++.
T Consensus 44 l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 123 (245)
T 3dkp_A 44 ILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISE 123 (245)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhc
Confidence 3456887 99999999999999999999999999999999999998875 466899999999999999999999876
Q ss_pred ----CeEEEecccc--------cCCCCCeeEecHHHHHHHHhcC--ccccCcccEEEEeccccCCCC---CchHHHHHHH
Q 002357 145 ----DVGLMTGDVT--------LSPNASCLVMTTEILRGMLYRG--SEVLKEVAWVIFDEIHYMKDR---ERGVVWEESI 207 (931)
Q Consensus 145 ----~vg~~tGd~~--------~~~~~~IlV~Tpe~L~~~l~~~--~~~l~~l~~vViDEaH~l~~~---~~g~~~~~ii 207 (931)
.+..++|+.. ...+++|+|+||+++.+++.+. ...+.++++||+||||++.++ ++...+..++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~ 203 (245)
T 3dkp_A 124 GTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIF 203 (245)
T ss_dssp TSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHH
T ss_pred ccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHH
Confidence 3444554432 2346899999999999998776 356789999999999999874 4455555565
Q ss_pred Hhc-CCCceEEEeccCCCChHHHHHHHHhhcCCCeEEEec
Q 002357 208 IFL-PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYT 246 (931)
Q Consensus 208 ~~l-~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~~ 246 (931)
..+ +...|+++||||+++ ++.+|+.....+++.+...
T Consensus 204 ~~~~~~~~~~~~~SAT~~~--~v~~~~~~~l~~p~~i~~~ 241 (245)
T 3dkp_A 204 LACTSHKVRRAMFSATFAY--DVEQWCKLNLDNVISVSIG 241 (245)
T ss_dssp HHCCCTTCEEEEEESSCCH--HHHHHHHHHSSSCEEEEEC
T ss_pred HhcCCCCcEEEEEeccCCH--HHHHHHHHhCCCCEEEEeC
Confidence 554 467899999999975 4558888887777766543
No 73
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=8.9e-25 Score=227.71 Aligned_cols=172 Identities=20% Similarity=0.203 Sum_probs=143.4
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC---CCEEEEEcCchhhHHHHHHHHHHhcC-
Q 002357 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYRELHQEFK- 144 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~---~~rvl~l~P~kaL~~Q~~~~l~~~~~- 144 (931)
...++|+ |+++|.++++.+.+|+++++++|||+|||++|.++++..+.. +.++||++|+++|++|++++++++..
T Consensus 29 l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 108 (220)
T 1t6n_A 29 IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKY 108 (220)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTT
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 3457888 999999999999999999999999999999999999988743 45899999999999999999998852
Q ss_pred ----CeEEEecccccC--------CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCC-CCchHHHHHHHHhcC
Q 002357 145 ----DVGLMTGDVTLS--------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD-RERGVVWEESIIFLP 211 (931)
Q Consensus 145 ----~vg~~tGd~~~~--------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~-~~~g~~~~~ii~~l~ 211 (931)
.++.++|+.+.. ..++|+|+||+++.+++.+....+.++++||+||||++.+ .++...+..++..++
T Consensus 109 ~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~ 188 (220)
T 1t6n_A 109 MPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 188 (220)
T ss_dssp STTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSC
T ss_pred CCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCC
Confidence 678888886532 3579999999999999888777789999999999999976 356667777888888
Q ss_pred CCceEEEeccCCCChHHHHHHHHhhcCCCeEE
Q 002357 212 PAIKMVFLSATMSNATQFAEWICHLHKQPCHV 243 (931)
Q Consensus 212 ~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v 243 (931)
+..|++++|||+++..+ +.+.....+|..+
T Consensus 189 ~~~~~i~~SAT~~~~~~--~~~~~~~~~p~~i 218 (220)
T 1t6n_A 189 HEKQVMMFSATLSKEIR--PVCRKFMQDPMEI 218 (220)
T ss_dssp SSSEEEEEESCCCTTTH--HHHHTTCSSCEEE
T ss_pred CcCeEEEEEeecCHHHH--HHHHHHcCCCeEE
Confidence 89999999999987643 4444444555443
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.90 E-value=9.3e-23 Score=245.25 Aligned_cols=112 Identities=20% Similarity=0.228 Sum_probs=97.6
Q ss_pred CCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHH
Q 002357 328 KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK 407 (931)
Q Consensus 328 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R 407 (931)
.+.++||||+|++.|+.++..|...++. +.++||++++.+|
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~---------------------------------------~~~lh~~~~~~~R 478 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIR---------------------------------------ARYLHHELDAFKR 478 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCC---------------------------------------EEEECTTCCHHHH
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCC---------------------------------------ceeecCCCCHHHH
Confidence 4579999999999999999999886654 5788999999999
Q ss_pred HHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCC-cccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 408 ELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSH-RYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 408 ~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~-~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
..+++.|++|.++|||||+++++|+|+|++++|| .||...+ -|.+..+|+||+|||||.| .|.+++++++.
T Consensus 479 ~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI----~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~ 550 (664)
T 1c4o_A 479 QALIRDLRLGHYDCLVGINLLREGLDIPEVSLVA----ILDADKEGFLRSERSLIQTIGRAARNA---RGEVWLYADRV 550 (664)
T ss_dssp HHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEE----ETTTTSCSGGGSHHHHHHHHGGGTTST---TCEEEEECSSC
T ss_pred HHHHHHhhcCCceEEEccChhhcCccCCCCCEEE----EeCCcccCCCCCHHHHHHHHCccCcCC---CCEEEEEEcCC
Confidence 9999999999999999999999999999999998 4443211 2678999999999999986 48899988765
No 75
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.87 E-value=1.8e-20 Score=225.26 Aligned_cols=112 Identities=20% Similarity=0.287 Sum_probs=97.4
Q ss_pred CCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHH
Q 002357 328 KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK 407 (931)
Q Consensus 328 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R 407 (931)
.+.++||||+|++.|+.++..|...++. +.++||++++.+|
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~---------------------------------------~~~lh~~~~~~~R 484 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIK---------------------------------------VNYLHSEIKTLER 484 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCC---------------------------------------EEEECTTCCHHHH
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCC---------------------------------------eEEEeCCCCHHHH
Confidence 4578999999999999999999886654 5788999999999
Q ss_pred HHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCC-cccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002357 408 ELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSH-RYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 408 ~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~-~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
..+++.|++|.++|||||+++++|+|+|++++|| .||...+ -|.+..+|+||+|||||.+ .|.+++++++.
T Consensus 485 ~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi----~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~ 556 (661)
T 2d7d_A 485 IEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVA----ILDADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKI 556 (661)
T ss_dssp HHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEE----ETTTTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSC
T ss_pred HHHHHHHhcCCeEEEEecchhhCCcccCCCCEEE----EeCcccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCC
Confidence 9999999999999999999999999999999998 4443211 1678999999999999983 58899988765
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.87 E-value=2e-20 Score=220.12 Aligned_cols=124 Identities=20% Similarity=0.205 Sum_probs=106.1
Q ss_pred hccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC----C
Q 002357 70 AKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----D 145 (931)
Q Consensus 70 ~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~----~ 145 (931)
...++|.|+++|..+++.+.+|+ ++.+.||+|||++|.+|++.....|..|+|++||++||.|.+..+..++. .
T Consensus 73 ~R~lG~~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLs 150 (997)
T 2ipc_A 73 KRYLGMRHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLS 150 (997)
T ss_dssp HHHTCCCCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHhCCCCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCe
Confidence 34579999999999999999998 99999999999999999976555788999999999999999998887754 7
Q ss_pred eEEEecccccC-----CCCCeeEecHHHH-HHHHhcCc------cccC---cccEEEEeccccCC
Q 002357 146 VGLMTGDVTLS-----PNASCLVMTTEIL-RGMLYRGS------EVLK---EVAWVIFDEIHYMK 195 (931)
Q Consensus 146 vg~~tGd~~~~-----~~~~IlV~Tpe~L-~~~l~~~~------~~l~---~l~~vViDEaH~l~ 195 (931)
+++++|+.+.. ..++|+|+||+.| .++|..+. ..++ ++.++|+||||.|+
T Consensus 151 v~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 151 VGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp EEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred EEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 88999987532 2589999999999 67775542 3467 89999999999886
No 77
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.85 E-value=3.1e-21 Score=199.87 Aligned_cols=151 Identities=21% Similarity=0.234 Sum_probs=112.3
Q ss_pred cCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC------CCEEEEEcCchhhHHH-HHHHHHHhcC
Q 002357 72 TYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD------KQRVIYTSPLKALSNQ-KYRELHQEFK 144 (931)
Q Consensus 72 ~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~------~~rvl~l~P~kaL~~Q-~~~~l~~~~~ 144 (931)
...++|+++|.++++.+.+++++++.+|||+|||++|.+++...+.. +.++||++|+++|++| +.+.+..+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 44678999999999999999999999999999999999988876532 6799999999999999 6777777754
Q ss_pred ---CeEEEecccccCC-------CCCeeEecHHHHHHHHhcCc------cccCcccEEEEeccccCCCCCchHH-HHHHH
Q 002357 145 ---DVGLMTGDVTLSP-------NASCLVMTTEILRGMLYRGS------EVLKEVAWVIFDEIHYMKDRERGVV-WEESI 207 (931)
Q Consensus 145 ---~vg~~tGd~~~~~-------~~~IlV~Tpe~L~~~l~~~~------~~l~~l~~vViDEaH~l~~~~~g~~-~~~ii 207 (931)
.++.++|+..... .++|+|+||+.+.+++.... ..+.++++||+||||++.+.++... +...+
T Consensus 109 ~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~ 188 (216)
T 3b6e_A 109 KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 188 (216)
T ss_dssp TTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHH
T ss_pred cCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHH
Confidence 6888888876543 38999999999998887643 4577899999999999986533332 22222
Q ss_pred Hhc-------------CCCceEEEeccC
Q 002357 208 IFL-------------PPAIKMVFLSAT 222 (931)
Q Consensus 208 ~~l-------------~~~~q~v~lSAT 222 (931)
... .+..++++||||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 189 MQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHhcccccccccccCCCCcceEEEeecC
Confidence 211 157899999998
No 78
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.84 E-value=1.1e-20 Score=204.52 Aligned_cols=147 Identities=17% Similarity=0.146 Sum_probs=123.1
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCC-CEEEEEcCchhhHHHHHHHHHHhcC----CeEEE
Q 002357 75 FELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK-QRVIYTSPLKALSNQKYRELHQEFK----DVGLM 149 (931)
Q Consensus 75 f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~-~rvl~l~P~kaL~~Q~~~~l~~~~~----~vg~~ 149 (931)
++|+++|.++++.+..+.+.++++|||+|||+++..++...+..+ .++||++|+++|++|+++++.+++. .++.+
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~ 191 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKI 191 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEEC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEE
Confidence 589999999999988888899999999999999988877766544 4999999999999999999998865 45666
Q ss_pred ecccccC----CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCCC
Q 002357 150 TGDVTLS----PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSN 225 (931)
Q Consensus 150 tGd~~~~----~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n 225 (931)
+|+.... ...+|+|+||+.+.+. ....+.++++||+||||++. +..+..++..+....++++||||+++
T Consensus 192 ~~~~~~~~~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~~~~~~l~lSATp~~ 264 (282)
T 1rif_A 192 GGGASKDDKYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCMFKFGLSGSLRD 264 (282)
T ss_dssp STTCSSTTCCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCCEEEEECSSCCT
T ss_pred eCCCcchhhhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCC----cccHHHHHHHhhcCCeEEEEeCCCCC
Confidence 6665544 5789999999977543 23457789999999999997 45778888888789999999999987
Q ss_pred hHH
Q 002357 226 ATQ 228 (931)
Q Consensus 226 ~~e 228 (931)
..+
T Consensus 265 ~~~ 267 (282)
T 1rif_A 265 GKA 267 (282)
T ss_dssp TST
T ss_pred cch
Confidence 653
No 79
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.83 E-value=3.1e-19 Score=210.35 Aligned_cols=120 Identities=19% Similarity=0.230 Sum_probs=88.1
Q ss_pred CCCCCCHHHHHHHH----HHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEE
Q 002357 73 YSFELDPFQRVSVA----CLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGL 148 (931)
Q Consensus 73 ~~f~l~~~Q~~ai~----~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~ 148 (931)
.+|+|+|+|.+++. ++..|+++++.||||+|||++|++|+.. .+.+++|++||++|+.|+++++..+..++.+
T Consensus 4 ~~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~---~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~ 80 (540)
T 2vl7_A 4 LKLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQ---LKKKVLIFTRTHSQLDSIYKNAKLLGLKTGF 80 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHH---HTCEEEEEESCHHHHHHHHHHHGGGTCCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHh---CCCcEEEEcCCHHHHHHHHHHHHhcCCcEEE
Confidence 46799999999865 4578899999999999999999988765 3789999999999999999999875444444
Q ss_pred Eecccc------------------------------------------------------cCCCCCeeEecHHHHHHHHh
Q 002357 149 MTGDVT------------------------------------------------------LSPNASCLVMTTEILRGMLY 174 (931)
Q Consensus 149 ~tGd~~------------------------------------------------------~~~~~~IlV~Tpe~L~~~l~ 174 (931)
+.|... .-..++|+|+|+..|.+...
T Consensus 81 l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~ 160 (540)
T 2vl7_A 81 LIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPI 160 (540)
T ss_dssp C---------------------------------------------------------CTTGGGCSEEEEETHHHHSHHH
T ss_pred ecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHH
Confidence 443211 01247999999999986443
Q ss_pred cCcc-------ccCcccEEEEeccccCC
Q 002357 175 RGSE-------VLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 175 ~~~~-------~l~~l~~vViDEaH~l~ 195 (931)
++.. .+.+..+|||||||++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 161 RNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp HHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred HHhhCcccccccCcCCCEEEEEccccHH
Confidence 3221 35678999999999994
No 80
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.82 E-value=8.8e-20 Score=180.30 Aligned_cols=129 Identities=22% Similarity=0.356 Sum_probs=110.7
Q ss_pred CCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhcc
Q 002357 315 SDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRG 394 (931)
Q Consensus 315 ~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 394 (931)
.++..+...+......++||||+++..|+.++..|...++.
T Consensus 21 ~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~--------------------------------------- 61 (163)
T 2hjv_A 21 NKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYP--------------------------------------- 61 (163)
T ss_dssp GHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCC---------------------------------------
T ss_pred HHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCc---------------------------------------
Confidence 34556666666667789999999999999999999876554
Q ss_pred ceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCC
Q 002357 395 IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDD 474 (931)
Q Consensus 395 i~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~ 474 (931)
+..+||+|++.+|+.+++.|++|.++|||||+++++|+|+|++++|| .||. |.++.+|+||+||+||.|+.
T Consensus 62 ~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi----~~~~----p~~~~~~~qr~GR~~R~g~~- 132 (163)
T 2hjv_A 62 CDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVI----NYDL----PLEKESYVHRTGRTGRAGNK- 132 (163)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEE----ESSC----CSSHHHHHHHTTTSSCTTCC-
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEE----EeCC----CCCHHHHHHhccccCcCCCC-
Confidence 68999999999999999999999999999999999999999999999 7787 89999999999999999975
Q ss_pred ceEEEEEeCCccCHHHHHh
Q 002357 475 RGICIIMVDEQMEMNTLKD 493 (931)
Q Consensus 475 ~g~~ii~~~~~~~~~~l~~ 493 (931)
|.+++++.+. +...+++
T Consensus 133 -g~~~~~~~~~-~~~~~~~ 149 (163)
T 2hjv_A 133 -GKAISFVTAF-EKRFLAD 149 (163)
T ss_dssp -EEEEEEECGG-GHHHHHH
T ss_pred -ceEEEEecHH-HHHHHHH
Confidence 7777777654 4444443
No 81
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.82 E-value=5.8e-20 Score=193.20 Aligned_cols=159 Identities=21% Similarity=0.314 Sum_probs=123.0
Q ss_pred ccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHH-hCC----CEEEEEcCchhhHHHHHHHHHHhcC-
Q 002357 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF-RDK----QRVIYTSPLKALSNQKYRELHQEFK- 144 (931)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l-~~~----~rvl~l~P~kaL~~Q~~~~l~~~~~- 144 (931)
....+.++++|.++++.+.+|++++++||||||||+++..+++... ..+ .++++++|+++|+.|+++.+...++
T Consensus 56 ~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 56 ERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp HHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred HHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 3446778999999999999999999999999999998877777654 233 4899999999999999999988766
Q ss_pred ----CeEEEeccccc--CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccC-CCCCch-HHHHHHHHhcCCCceE
Q 002357 145 ----DVGLMTGDVTL--SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYM-KDRERG-VVWEESIIFLPPAIKM 216 (931)
Q Consensus 145 ----~vg~~tGd~~~--~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l-~~~~~g-~~~~~ii~~l~~~~q~ 216 (931)
.+|.-...... .++++|+|+||+++.+++.. .++++++||+||||.+ .+.++. ..+..++... ++.|+
T Consensus 136 ~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~ 211 (235)
T 3llm_A 136 EPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRI 211 (235)
T ss_dssp CTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEE
T ss_pred ccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeE
Confidence 23432222222 25688999999999998875 3889999999999985 444333 2334444444 57999
Q ss_pred EEeccCCCChHHHHHHHH
Q 002357 217 VFLSATMSNATQFAEWIC 234 (931)
Q Consensus 217 v~lSAT~~n~~e~~~~l~ 234 (931)
+++|||+++.. +++|++
T Consensus 212 il~SAT~~~~~-~~~~~~ 228 (235)
T 3llm_A 212 VLMSATIDTSM-FCEYFF 228 (235)
T ss_dssp EEEECSSCCHH-HHHHTT
T ss_pred EEEecCCCHHH-HHHHcC
Confidence 99999998776 778775
No 82
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.81 E-value=1.5e-19 Score=186.73 Aligned_cols=129 Identities=23% Similarity=0.344 Sum_probs=110.6
Q ss_pred CCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhc
Q 002357 314 GSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKR 393 (931)
Q Consensus 314 ~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 393 (931)
..++..+.+.+......++||||+++..++.++..|...++.
T Consensus 16 ~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~-------------------------------------- 57 (212)
T 3eaq_A 16 RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHP-------------------------------------- 57 (212)
T ss_dssp TSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCC--------------------------------------
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCC--------------------------------------
Confidence 445666777777777889999999999999999999765443
Q ss_pred cceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCC
Q 002357 394 GIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKD 473 (931)
Q Consensus 394 gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~ 473 (931)
+..+||+|++.+|+.+++.|++|.++|||||+++++|||+|++++|| +||. |.++.+|+||+|||||.|..
T Consensus 58 -~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi----~~~~----p~~~~~~~qr~GR~gR~g~~ 128 (212)
T 3eaq_A 58 -AQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVV----HYRL----PDRAEAYQHRSGRTGRAGRG 128 (212)
T ss_dssp -EEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEE----ESSC----CSSHHHHHHHHTTBCCCC--
T ss_pred -EEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEE----ECCC----CcCHHHHHHHhcccCCCCCC
Confidence 68999999999999999999999999999999999999999999999 7787 89999999999999999974
Q ss_pred CceEEEEEeCCccCHHHHH
Q 002357 474 DRGICIIMVDEQMEMNTLK 492 (931)
Q Consensus 474 ~~g~~ii~~~~~~~~~~l~ 492 (931)
|.+++++++. +...+.
T Consensus 129 --g~~~~l~~~~-~~~~~~ 144 (212)
T 3eaq_A 129 --GRVVLLYGPR-ERRDVE 144 (212)
T ss_dssp --BEEEEEECGG-GHHHHH
T ss_pred --CeEEEEEchh-HHHHHH
Confidence 8888888765 433333
No 83
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=181.51 Aligned_cols=119 Identities=21% Similarity=0.326 Sum_probs=99.8
Q ss_pred HHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhcccee
Q 002357 318 FKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAV 397 (931)
Q Consensus 318 ~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~ 397 (931)
..+...+......++||||++++.|+.++..|...++. +..
T Consensus 23 ~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~---------------------------------------~~~ 63 (175)
T 2rb4_A 23 QALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQ---------------------------------------VSL 63 (175)
T ss_dssp HHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCC---------------------------------------EEE
T ss_pred HHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCc---------------------------------------EEE
Confidence 34455555556679999999999999999999876543 689
Q ss_pred ccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcc------cCHHHHHHhhhccCCCC
Q 002357 398 HHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRY------IGSGEYIQMSGRAGRRG 471 (931)
Q Consensus 398 ~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~------~s~~~y~Qr~GRaGR~G 471 (931)
+||+|++.+|+.+++.|++|.++|||||+++++|+|+|++++|| +||. | .++.+|+||+|||||.|
T Consensus 64 ~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi----~~d~----p~~~~~~~~~~~~~qr~GR~gR~g 135 (175)
T 2rb4_A 64 LSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVV----NFDL----PVKQGEEPDYETYLHRIGRTGRFG 135 (175)
T ss_dssp ECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEE----ESSC----CC--CCSCCHHHHHHHHCBC----
T ss_pred EeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEE----EeCC----CCCccccCCHHHHHHHhcccccCC
Confidence 99999999999999999999999999999999999999999999 5665 5 88999999999999999
Q ss_pred CCCceEEEEEeCCc
Q 002357 472 KDDRGICIIMVDEQ 485 (931)
Q Consensus 472 ~~~~g~~ii~~~~~ 485 (931)
.. |.+++++++.
T Consensus 136 ~~--g~~~~~~~~~ 147 (175)
T 2rb4_A 136 KK--GLAFNMIEVD 147 (175)
T ss_dssp CC--EEEEEEECGG
T ss_pred CC--ceEEEEEccc
Confidence 64 8888888765
No 84
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.81 E-value=6.6e-20 Score=182.79 Aligned_cols=122 Identities=23% Similarity=0.360 Sum_probs=108.1
Q ss_pred CCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhcc
Q 002357 315 SDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRG 394 (931)
Q Consensus 315 ~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 394 (931)
.+...+...+......++||||+++..|+.++..|...++.
T Consensus 17 ~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~--------------------------------------- 57 (172)
T 1t5i_A 17 EKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFP--------------------------------------- 57 (172)
T ss_dssp GHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCC---------------------------------------
T ss_pred HHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCC---------------------------------------
Confidence 34556666676667789999999999999999999775543
Q ss_pred ceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCC
Q 002357 395 IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDD 474 (931)
Q Consensus 395 i~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~ 474 (931)
+..+||+|++.+|+.+++.|++|.++|||||+++++|+|+|++++|| +||. |.++.+|+||+|||||.|..
T Consensus 58 ~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi----~~d~----p~~~~~~~qr~GR~~R~g~~- 128 (172)
T 1t5i_A 58 AIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF----NYDM----PEDSDTYLHRVARAGRFGTK- 128 (172)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEE----ESSC----CSSHHHHHHHHHHHTGGGCC-
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEE----EECC----CCCHHHHHHHhcccccCCCC-
Confidence 68899999999999999999999999999999999999999999999 7887 89999999999999999974
Q ss_pred ceEEEEEeCCc
Q 002357 475 RGICIIMVDEQ 485 (931)
Q Consensus 475 ~g~~ii~~~~~ 485 (931)
|.+++++++.
T Consensus 129 -g~~~~~~~~~ 138 (172)
T 1t5i_A 129 -GLAITFVSDE 138 (172)
T ss_dssp -CEEEEEECSH
T ss_pred -cEEEEEEcCh
Confidence 7788887764
No 85
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.79 E-value=2.2e-19 Score=177.80 Aligned_cols=121 Identities=21% Similarity=0.365 Sum_probs=101.1
Q ss_pred CHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccc
Q 002357 316 DIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGI 395 (931)
Q Consensus 316 ~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi 395 (931)
+...+.+.+......++||||++++.|+.++..|...++. +
T Consensus 17 K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~---------------------------------------~ 57 (165)
T 1fuk_A 17 KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFT---------------------------------------V 57 (165)
T ss_dssp HHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCC---------------------------------------E
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC---------------------------------------E
Confidence 3445555566566789999999999999999999775543 6
Q ss_pred eeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCc
Q 002357 396 AVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDR 475 (931)
Q Consensus 396 ~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~ 475 (931)
..+||+|++.+|+.+++.|++|.++|||||+++++|+|+|++++|| .||. |.++.+|+||+|||||.|..
T Consensus 58 ~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi----~~~~----p~~~~~~~qr~GR~gR~g~~-- 127 (165)
T 1fuk_A 58 SAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI----NYDL----PANKENYIHRIGRGGRFGRK-- 127 (165)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEE----ESSC----CSSGGGGGGSSCSCC-------
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEE----EeCC----CCCHHHHHHHhcccccCCCC--
Confidence 8999999999999999999999999999999999999999999999 7777 88999999999999999974
Q ss_pred eEEEEEeCCc
Q 002357 476 GICIIMVDEQ 485 (931)
Q Consensus 476 g~~ii~~~~~ 485 (931)
|.+++++++.
T Consensus 128 g~~~~~~~~~ 137 (165)
T 1fuk_A 128 GVAINFVTNE 137 (165)
T ss_dssp CEEEEEEETT
T ss_pred ceEEEEEcch
Confidence 6677777654
No 86
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.78 E-value=9.5e-19 Score=183.84 Aligned_cols=142 Identities=21% Similarity=0.184 Sum_probs=115.7
Q ss_pred cCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC-C-eEEE
Q 002357 72 TYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-D-VGLM 149 (931)
Q Consensus 72 ~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~-vg~~ 149 (931)
.++++|+++|.+++..+.++.++++++|||+|||.++..++... +.+++|++|+++|++|+++++.+ ++ . ++.+
T Consensus 89 ~~~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~-~~~~~v~~~ 164 (237)
T 2fz4_A 89 DAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-FGEEYVGEF 164 (237)
T ss_dssp CCCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGG-GCGGGEEEE
T ss_pred cCCCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh-CCCCeEEEE
Confidence 45678999999999999888899999999999999988776653 78999999999999999999999 55 6 8999
Q ss_pred ecccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCCChH
Q 002357 150 TGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNAT 227 (931)
Q Consensus 150 tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n~~ 227 (931)
+|+.. ...+|+|+|++.+...... ....+++||+||||++.+.. +..++..++ ..++++||||+++..
T Consensus 165 ~g~~~--~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~----~~~i~~~~~-~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 165 SGRIK--ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAES----YVQIAQMSI-APFRLGLTATFERED 232 (237)
T ss_dssp SSSCB--CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTT----HHHHHHTCC-CSEEEEEEESCC---
T ss_pred eCCCC--CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChH----HHHHHHhcc-CCEEEEEecCCCCCC
Confidence 98875 3579999999998765532 23468999999999998654 445555555 678999999998654
No 87
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.78 E-value=4.4e-19 Score=178.93 Aligned_cols=122 Identities=20% Similarity=0.236 Sum_probs=92.7
Q ss_pred CCHHHHHHHHHHc-CCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhc
Q 002357 315 SDIFKIVKMIMER-KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKR 393 (931)
Q Consensus 315 ~~~~~ll~~l~~~-~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 393 (931)
.++..+++.+... ...++||||+++..|+.++..|...++.
T Consensus 31 ~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~-------------------------------------- 72 (185)
T 2jgn_A 31 DKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYA-------------------------------------- 72 (185)
T ss_dssp GHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCC--------------------------------------
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCc--------------------------------------
Confidence 3455566666655 4678999999999999999999775543
Q ss_pred cceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCC
Q 002357 394 GIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKD 473 (931)
Q Consensus 394 gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~ 473 (931)
+..+||+|++.+|+.+++.|++|.++|||||+++++|+|+|++++|| .||. |.++.+|+||+|||||.|..
T Consensus 73 -~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI----~~d~----p~s~~~~~Qr~GR~~R~g~~ 143 (185)
T 2jgn_A 73 -CTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI----NFDL----PSDIEEYVHRIGRTGRVGNL 143 (185)
T ss_dssp -EEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEE----ESSC----CSSHHHHHHHHTTBCCTTSC
T ss_pred -eEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEE----EeCC----CCCHHHHHHHccccCCCCCC
Confidence 68999999999999999999999999999999999999999999999 7887 89999999999999999974
Q ss_pred CceEEEEEeCCc
Q 002357 474 DRGICIIMVDEQ 485 (931)
Q Consensus 474 ~~g~~ii~~~~~ 485 (931)
|.+++++++.
T Consensus 144 --g~~~~~~~~~ 153 (185)
T 2jgn_A 144 --GLATSFFNER 153 (185)
T ss_dssp --EEEEEEECGG
T ss_pred --cEEEEEEchh
Confidence 7788877654
No 88
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.78 E-value=9.9e-19 Score=189.15 Aligned_cols=129 Identities=22% Similarity=0.345 Sum_probs=107.7
Q ss_pred CCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhc
Q 002357 314 GSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKR 393 (931)
Q Consensus 314 ~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 393 (931)
..++..+.+.+......++||||++++.++.++..|...++.
T Consensus 13 ~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~-------------------------------------- 54 (300)
T 3i32_A 13 RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHP-------------------------------------- 54 (300)
T ss_dssp SSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCC--------------------------------------
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCC--------------------------------------
Confidence 345666777776667889999999999999999999876554
Q ss_pred cceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCC
Q 002357 394 GIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKD 473 (931)
Q Consensus 394 gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~ 473 (931)
+..+||+|++.+|+.+++.|++|.++|||||+++++|||+|++++|| +||. |.++..|+||+|||||.|..
T Consensus 55 -~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI----~~d~----p~s~~~y~Qr~GRagR~g~~ 125 (300)
T 3i32_A 55 -AQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVV----HYRM----PDRAEAYQHRSGRTGRAGRG 125 (300)
T ss_dssp -EEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEE----ESSC----CSSTTHHHHHHTCCC-----
T ss_pred -EEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEE----EcCC----CCCHHHHHHHccCcCcCCCC
Confidence 68999999999999999999999999999999999999999999999 7777 88999999999999999975
Q ss_pred CceEEEEEeCCccCHHHHH
Q 002357 474 DRGICIIMVDEQMEMNTLK 492 (931)
Q Consensus 474 ~~g~~ii~~~~~~~~~~l~ 492 (931)
|.|++++++. +...++
T Consensus 126 --G~~i~l~~~~-e~~~~~ 141 (300)
T 3i32_A 126 --GRVVLLYGPR-ERRDVE 141 (300)
T ss_dssp --CEEEEEECSS-THHHHH
T ss_pred --ceEEEEeChH-HHHHHH
Confidence 7888888765 433333
No 89
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=176.89 Aligned_cols=124 Identities=19% Similarity=0.311 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhcc
Q 002357 315 SDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRG 394 (931)
Q Consensus 315 ~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 394 (931)
.++..+++.+.. ...++||||+++..++.++..|...++.
T Consensus 41 ~K~~~L~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~g~~--------------------------------------- 80 (191)
T 2p6n_A 41 AKMVYLLECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVE--------------------------------------- 80 (191)
T ss_dssp GHHHHHHHHHTT-SCSCEEEECSCHHHHHHHHHHHHHHTCC---------------------------------------
T ss_pred HHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHHcCCc---------------------------------------
Confidence 345555655554 3468999999999999999999765443
Q ss_pred ceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCC
Q 002357 395 IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDD 474 (931)
Q Consensus 395 i~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~ 474 (931)
+..+||+|++.+|+.+++.|++|.++|||||+++++|+|+|++++|| .||. |.++.+|+||+||+||.|..
T Consensus 81 ~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI----~~d~----p~~~~~~~qr~GR~gR~g~~- 151 (191)
T 2p6n_A 81 AVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVI----NYDM----PEEIENYVHRIGRTGCSGNT- 151 (191)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEE----ESSC----CSSHHHHHHHHTTSCC---C-
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEE----EeCC----CCCHHHHHHHhCccccCCCC-
Confidence 68899999999999999999999999999999999999999999999 7887 89999999999999999985
Q ss_pred ceEEEEEeCCccCH
Q 002357 475 RGICIIMVDEQMEM 488 (931)
Q Consensus 475 ~g~~ii~~~~~~~~ 488 (931)
|.+++++++..+.
T Consensus 152 -g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 152 -GIATTFINKACDE 164 (191)
T ss_dssp -CEEEEEECTTSCH
T ss_pred -cEEEEEEcCchhH
Confidence 6777777655343
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.75 E-value=8.7e-17 Score=190.23 Aligned_cols=120 Identities=19% Similarity=0.169 Sum_probs=96.1
Q ss_pred CCCCCHHHHHHHHH----HhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC----C
Q 002357 74 SFELDPFQRVSVAC----LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----D 145 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~----l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~----~ 145 (931)
+|+++|+|.+++.. +..|+++++.||||+|||++|++|++. .+.+++|++||++|+.|+.+++..+.. .
T Consensus 1 ~~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~ 77 (551)
T 3crv_A 1 MVKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---VKPKVLFVVRTHNEFYPIYRDLTKIREKRNIT 77 (551)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCcc
Confidence 57899999997764 468999999999999999999999887 578999999999999999999987632 4
Q ss_pred eEEEeccccc----------------------------------------------------------CCCCCeeEecHH
Q 002357 146 VGLMTGDVTL----------------------------------------------------------SPNASCLVMTTE 167 (931)
Q Consensus 146 vg~~tGd~~~----------------------------------------------------------~~~~~IlV~Tpe 167 (931)
+.+++|..++ ...++|+|+|+.
T Consensus 78 ~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~ 157 (551)
T 3crv_A 78 FSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYP 157 (551)
T ss_dssp EEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETH
T ss_pred EEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCch
Confidence 5566663221 125799999999
Q ss_pred HHHHHHhcCcc-ccCcccEEEEeccccCCC
Q 002357 168 ILRGMLYRGSE-VLKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 168 ~L~~~l~~~~~-~l~~l~~vViDEaH~l~~ 196 (931)
.|.+...+... ...+..+|||||||.+.+
T Consensus 158 ~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 158 YFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred HhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99876544432 224678999999999876
No 91
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.58 E-value=1.7e-19 Score=179.49 Aligned_cols=119 Identities=23% Similarity=0.339 Sum_probs=101.9
Q ss_pred HHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhcccee
Q 002357 318 FKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAV 397 (931)
Q Consensus 318 ~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~ 397 (931)
..+...+......++||||+++..|+.++..|...++. +..
T Consensus 19 ~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~---------------------------------------~~~ 59 (170)
T 2yjt_D 19 ALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGIN---------------------------------------NCY 59 (170)
Confidence 34444444455678999999999999999999775443 578
Q ss_pred ccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceE
Q 002357 398 HHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGI 477 (931)
Q Consensus 398 ~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~ 477 (931)
+||+|++.+|+.+++.|++|.++|||||+++++|+|+|++++|| .||. |.++.+|+||+||+||.|+. |.
T Consensus 60 ~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi----~~~~----p~~~~~~~qr~GR~~R~g~~--g~ 129 (170)
T 2yjt_D 60 LEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVF----NFDM----PRSGDTYLHRIGRTARAGRK--GT 129 (170)
Confidence 99999999999999999999999999999999999999999999 6777 88999999999999999975 66
Q ss_pred EEEEeCCc
Q 002357 478 CIIMVDEQ 485 (931)
Q Consensus 478 ~ii~~~~~ 485 (931)
+++++++.
T Consensus 130 ~~~~~~~~ 137 (170)
T 2yjt_D 130 AISLVEAH 137 (170)
Confidence 66666544
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.60 E-value=2.9e-14 Score=169.88 Aligned_cols=68 Identities=22% Similarity=0.276 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHH----HHhcCCcEEEEcCCCCCcHHHHHHHHHHHH-hCCCEEEEEcCchhhHHHHHHHHHHh
Q 002357 75 FELDPFQRVSVA----CLERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 75 f~l~~~Q~~ai~----~l~~g~~vlv~apTGsGKTl~~~l~i~~~l-~~~~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
|+|+|.|.+.+. ++.+|+++++.||||+|||++|++|++..+ ..+.+++|++||++|+.|+.+++..+
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHH
Confidence 679999999985 457899999999999999999999988776 35789999999999999999998775
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.51 E-value=3e-14 Score=152.17 Aligned_cols=125 Identities=14% Similarity=0.166 Sum_probs=91.9
Q ss_pred CCCHHHHHHHHHHc--CCCcEEEEecCHHHHHHHHHHhccC-CCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHH
Q 002357 314 GSDIFKIVKMIMER--KFQPVIVFSFSRRECEQHAMSMSKL-DFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPL 390 (931)
Q Consensus 314 ~~~~~~ll~~l~~~--~~~~~IVF~~sr~~~~~la~~L~~~-~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~ 390 (931)
..++..+.+.+... .+.++||||+++..++.++..|... ++.
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~----------------------------------- 139 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTE----------------------------------- 139 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSC-----------------------------------
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCc-----------------------------------
Confidence 34555555555543 5689999999999999999998652 443
Q ss_pred hhccceeccCCCCHHHHHHHHHHHhcC-Cce-EEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccC
Q 002357 391 LKRGIAVHHSGLLPVIKELVELLFQEG-LVK-ALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAG 468 (931)
Q Consensus 391 l~~gi~~~hg~l~~~~R~~v~~~F~~g-~i~-vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaG 468 (931)
+..+||++++.+|+.+++.|++| .++ +|++|+++++|+|++++++|| .||+ |+++..|.|++||++
T Consensus 140 ----~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI----~~d~----~wnp~~~~Q~~gR~~ 207 (271)
T 1z5z_A 140 ----VPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI----HFDR----WWNPAVEDQATDRVY 207 (271)
T ss_dssp ----CCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEE----ECSC----CSCTTTC--------
T ss_pred ----EEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEE----EECC----CCChhHHHHHHHhcc
Confidence 57899999999999999999998 777 789999999999999999999 7777 888999999999999
Q ss_pred CCCCCCceEEEEEeCCc
Q 002357 469 RRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 469 R~G~~~~g~~ii~~~~~ 485 (931)
|.|+.+...++.++...
T Consensus 208 R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 208 RIGQTRNVIVHKLISVG 224 (271)
T ss_dssp ------CCEEEEEEETT
T ss_pred ccCCCCceEEEEEeeCC
Confidence 99998777777777655
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.57 E-value=1.8e-07 Score=111.20 Aligned_cols=139 Identities=14% Similarity=0.170 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHhcCCcEEEEcCCCCCcHH--HHHHHHHHHH--hCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEe---
Q 002357 78 DPFQRVSVACLERNESVLVSAHTSAGKTA--VAEYAIAMAF--RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMT--- 150 (931)
Q Consensus 78 ~~~Q~~ai~~l~~g~~vlv~apTGsGKTl--~~~l~i~~~l--~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~t--- 150 (931)
++.|+.|++.+..++.+++.|++|+|||. .+.++.+..+ ..+.++++++||..++.+..+.+.......++-.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~ 230 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK 230 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 78999999999999999999999999994 4555555544 3466999999999999998887765433222100
Q ss_pred ccccc-CCC-CCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccC
Q 002357 151 GDVTL-SPN-ASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSAT 222 (931)
Q Consensus 151 Gd~~~-~~~-~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT 222 (931)
..... ... ..++-.+|+.. .+.+. .....+++++|+|||+++. ...+..++..++...|+|++.=.
T Consensus 231 ~~~~~~~~Tih~ll~~~~~~~-~~~~~-~~~~l~~d~lIIDEAsml~----~~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 231 KRIPEDASTLHRLLGAQPGSQ-RLRHH-AGNPLHLDVLVVDEASMID----LPMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp CSCSCCCBTTTSCC------------C-TTSCCSCSEEEECSGGGCB----HHHHHHHHHTCCTTCEEEEEECT
T ss_pred hccchhhhhhHhhhccCCCch-HHHhc-cCCCCCCCEEEEechhhCC----HHHHHHHHHhCCCCCEEEEEcch
Confidence 00000 001 12222233321 11111 1122378999999999554 45667788888988999887643
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.29 E-value=3.5e-06 Score=99.15 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=87.1
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccc
Q 002357 74 SFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDV 153 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~ 153 (931)
++.+++.|++|+..+..+..+++.||.|+|||.+....+......+.++++++||...+....+....
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~------------ 254 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGR------------ 254 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTS------------
T ss_pred cCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcc------------
Confidence 78899999999999998999999999999999876544444446789999999999888776554310
Q ss_pred ccCCCCCeeEecHHHHHHHH----hcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEec
Q 002357 154 TLSPNASCLVMTTEILRGML----YRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLS 220 (931)
Q Consensus 154 ~~~~~~~IlV~Tpe~L~~~l----~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lS 220 (931)
-..|..++.... ..........++||+||++++. ...+..++..++...+++++.
T Consensus 255 --------~a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~lilvG 313 (574)
T 3e1s_A 255 --------TASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVLLVG 313 (574)
T ss_dssp --------CEEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEEEEE
T ss_pred --------cHHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEEEEe
Confidence 122222221110 1111223368999999999886 446677777788777777764
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.20 E-value=8.8e-06 Score=93.59 Aligned_cols=124 Identities=14% Similarity=0.196 Sum_probs=82.0
Q ss_pred CCCC-CCHHHHHHHHHHhc----C-CcEEEEcCCCCCcHHHHHHHHHHHHhCCC-EEEEEcCchhhHHHHHHHHHHhcCC
Q 002357 73 YSFE-LDPFQRVSVACLER----N-ESVLVSAHTSAGKTAVAEYAIAMAFRDKQ-RVIYTSPLKALSNQKYRELHQEFKD 145 (931)
Q Consensus 73 ~~f~-l~~~Q~~ai~~l~~----g-~~vlv~apTGsGKTl~~~l~i~~~l~~~~-rvl~l~P~kaL~~Q~~~~l~~~~~~ 145 (931)
.+|. |++-|++|+..+.. + ..++|.|+.|||||.+....+......+. ++++++||...+......+ +
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~----~- 95 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS----G- 95 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH----S-
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh----c-
Confidence 4565 99999999987632 2 38999999999999877555555555565 8999999988777665444 1
Q ss_pred eEEEecccccCCCCCeeEecHHHHHHHH-----------hcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCc
Q 002357 146 VGLMTGDVTLSPNASCLVMTTEILRGML-----------YRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAI 214 (931)
Q Consensus 146 vg~~tGd~~~~~~~~IlV~Tpe~L~~~l-----------~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~ 214 (931)
+-+.|...+.... ......+...++||+||+|.+. ...+..++..++...
T Consensus 96 ---------------~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~----~~~~~~l~~~~~~~~ 156 (459)
T 3upu_A 96 ---------------KEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYD----RKLFKILLSTIPPWC 156 (459)
T ss_dssp ---------------SCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCC----HHHHHHHHHHSCTTC
T ss_pred ---------------cchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCC----HHHHHHHHHhccCCC
Confidence 1122222221100 0112345678999999999875 445666677777666
Q ss_pred eEEEec
Q 002357 215 KMVFLS 220 (931)
Q Consensus 215 q~v~lS 220 (931)
+++++.
T Consensus 157 ~~~~vG 162 (459)
T 3upu_A 157 TIIGIG 162 (459)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 666654
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.05 E-value=1.3e-05 Score=96.33 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHhcC-CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC
Q 002357 76 ELDPFQRVSVACLERN-ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK 144 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~~g-~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~ 144 (931)
.|++-|++|+..++.. .-.+|+||+|||||.+....|...+.++.++|+++||..-++++.+.+.....
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~ 258 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQ 258 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCC
Confidence 4899999999887654 45789999999999988788888889999999999999999999999876544
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.93 E-value=6.6e-05 Score=89.61 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh-CCCEEEEEcCchhhHHHHHHHHHHhc
Q 002357 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQEF 143 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~-~~~rvl~l~P~kaL~~Q~~~~l~~~~ 143 (931)
.+++.|.+|+..+..+...+|.||+|+|||.+....+..... .+.++++++||...+.+..+.+.+..
T Consensus 180 ~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~ 248 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG 248 (624)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcC
Confidence 489999999999887788999999999999886655555555 67899999999999999998887653
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.88 E-value=4.3e-05 Score=93.32 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh-CCCEEEEEcCchhhHHHHHHHHHHhc
Q 002357 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQEF 143 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~-~~~rvl~l~P~kaL~~Q~~~~l~~~~ 143 (931)
.|++.|.+|+..+..+..++|.||+|+|||.+....+...+. .+.++++++||...+++..+.+.+..
T Consensus 360 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 489999999999987778899999999999886655554444 68899999999999999999988753
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.76 E-value=0.00016 Score=88.26 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh-CCCEEEEEcCchhhHHHHHHHHHHhc
Q 002357 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQEF 143 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~-~~~rvl~l~P~kaL~~Q~~~~l~~~~ 143 (931)
.+++.|.+|+..+..+...+|.||+|+|||.+....+...+. .+.++++++||...+.+..+.+....
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g 424 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG 424 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhC
Confidence 489999999999888788899999999999876555555454 67899999999999999988887653
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.53 E-value=0.00076 Score=81.04 Aligned_cols=67 Identities=22% Similarity=0.190 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCC----CEEEEEcCchhhHHHHHHHHHHhcC
Q 002357 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK----QRVIYTSPLKALSNQKYRELHQEFK 144 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~----~rvl~l~P~kaL~~Q~~~~l~~~~~ 144 (931)
.|++-|.+|+. ..+..++|.|+.|||||.+...-+...+..+ .+++++++|+..+.++.+++.+..+
T Consensus 9 ~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 9 SLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 48999999997 3457899999999999998877777766543 5899999999999999999988754
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.35 E-value=0.0014 Score=72.48 Aligned_cols=137 Identities=14% Similarity=0.216 Sum_probs=85.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHH-HHH-hCCCEEEEEcCchhhHHHHHHHHHHhcC---C--
Q 002357 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIA-MAF-RDKQRVIYTSPLKALSNQKYRELHQEFK---D-- 145 (931)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~-~~l-~~~~rvl~l~P~kaL~~Q~~~~l~~~~~---~-- 145 (931)
.+|.|+|+|+..+..+...+-+++..+-+.|||.++...++ .++ ..+.++++++|++.-+..+++.++..+. .
T Consensus 160 ~p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll 239 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFL 239 (385)
T ss_dssp EECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTT
T ss_pred CCCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhh
Confidence 46889999999998876556789999999999987544333 333 3567999999999999888877776543 1
Q ss_pred ---eEEEec-ccccCCCCCeeEe--cHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcC--CCceEE
Q 002357 146 ---VGLMTG-DVTLSPNASCLVM--TTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP--PAIKMV 217 (931)
Q Consensus 146 ---vg~~tG-d~~~~~~~~IlV~--Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~--~~~q~v 217 (931)
+...+. ......+..|.+. +|+.++ + .++.++|+||+|.+.+. ...|..+...+. .+.+++
T Consensus 240 ~~~~~~~~~~~I~f~nGs~i~~lsa~~~slr-----G----~~~~~viiDE~a~~~~~--~el~~al~~~ls~~~~~kii 308 (385)
T 2o0j_A 240 QPGIVEWNKGSIELDNGSSIGAYASSPDAVR-----G----NSFAMIYIEDCAFIPNF--HDSWLAIQPVISSGRRSKII 308 (385)
T ss_dssp SCCEEEECSSEEEETTSCEEEEEECSHHHHH-----T----SCCSEEEEESGGGSTTH--HHHHHHHHHHHHSTTCCEEE
T ss_pred hhhhccCCccEEEeCCCCEEEEEECCCCCcc-----C----CCCCEEEechhhhcCCC--HHHHHHHHHHhhcCCCCcEE
Confidence 111111 1112223333333 344332 2 24689999999988741 344554443332 344544
Q ss_pred Eec
Q 002357 218 FLS 220 (931)
Q Consensus 218 ~lS 220 (931)
..|
T Consensus 309 iiS 311 (385)
T 2o0j_A 309 ITT 311 (385)
T ss_dssp EEE
T ss_pred EEe
Confidence 444
No 103
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.17 E-value=0.0029 Score=74.91 Aligned_cols=140 Identities=13% Similarity=0.192 Sum_probs=89.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHH-HHHHHHHh-CCCEEEEEcCchhhHHHHHHHHHHhcCCeE---
Q 002357 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAE-YAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQEFKDVG--- 147 (931)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~-l~i~~~l~-~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg--- 147 (931)
.+|.|+|+|+..+..+...+.+++..+-|+|||.+.. +++..++. .+.++++++|++..+...++.++..+....
T Consensus 160 ~~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~ 239 (592)
T 3cpe_A 160 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFL 239 (592)
T ss_dssp BBCCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTT
T ss_pred ccCcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChHhh
Confidence 5788999999999887666789999999999998754 33434443 456999999999999999888877654221
Q ss_pred ---EE-ecc--cccCCCCCeeEe--cHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcC--CCceEE
Q 002357 148 ---LM-TGD--VTLSPNASCLVM--TTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP--PAIKMV 217 (931)
Q Consensus 148 ---~~-tGd--~~~~~~~~IlV~--Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~--~~~q~v 217 (931)
.. ... .....+..|.+. .|+.++.. +.+++|+||+|.+.+. ...|+.+...+. .+.+++
T Consensus 240 ~~~~~~~~~~~i~~~nGs~i~~~s~~~~~lrG~---------~~~~~iiDE~~~~~~~--~~l~~~~~~~l~~~~~~~ii 308 (592)
T 3cpe_A 240 QPGIVEWNKGSIELDNGSSIGAYASSPDAVRGN---------SFAMIYIEDCAFIPNF--HDSWLAIQPVISSGRRSKII 308 (592)
T ss_dssp SCCEEEECSSEEEETTSCEEEEEECCHHHHHHS---------CCSEEEEETGGGCTTH--HHHHHHHHHHHSSSSCCEEE
T ss_pred ccccccCCccEEEecCCCEEEEEeCCCCCccCC---------CcceEEEehhccCCch--hHHHHHHHHHhccCCCceEE
Confidence 11 011 112223333322 34544321 4689999999988652 255665544443 234555
Q ss_pred EeccCCC
Q 002357 218 FLSATMS 224 (931)
Q Consensus 218 ~lSAT~~ 224 (931)
..| |+.
T Consensus 309 ~is-TP~ 314 (592)
T 3cpe_A 309 ITT-TPN 314 (592)
T ss_dssp EEE-CCC
T ss_pred EEe-CCC
Confidence 444 543
No 104
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.85 E-value=0.00072 Score=69.06 Aligned_cols=114 Identities=15% Similarity=0.121 Sum_probs=67.5
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (931)
..|.-+++.+++|+|||..+.-.+.++..++.+|+|+.|...= +.........|+ . ...+.+.+.+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~-----r~~~~i~srlG~-----~---~~~~~~~~~~~ 76 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT-----RSIRNIQSRTGT-----S---LPSVEVESAPE 76 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG-----GGCSSCCCCCCC-----S---SCCEEESSTHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc-----hHHHHHHHhcCC-----C---ccccccCCHHH
Confidence 4566788999999999998877777777889999999887631 000011112221 1 11233555666
Q ss_pred HHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEec
Q 002357 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLS 220 (931)
Q Consensus 169 L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lS 220 (931)
+...+.... .-.+.++||+||++.+.. ..++.+....+...++++..
T Consensus 77 i~~~i~~~~-~~~~~dvViIDEaQ~l~~----~~ve~l~~L~~~gi~Vil~G 123 (223)
T 2b8t_A 77 ILNYIMSNS-FNDETKVIGIDEVQFFDD----RICEVANILAENGFVVIISG 123 (223)
T ss_dssp HHHHHHSTT-SCTTCCEEEECSGGGSCT----HHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHh-hCCCCCEEEEecCccCcH----HHHHHHHHHHhCCCeEEEEe
Confidence 665554321 123589999999998753 23333333233455555544
No 105
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.81 E-value=0.0045 Score=69.30 Aligned_cols=107 Identities=14% Similarity=-0.005 Sum_probs=67.1
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGM 172 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~~ 172 (931)
-.++.|+.|+|||.... ..+ ...+.+|++||+++++.+.+.+.+. |. ......-|.|.+.+..
T Consensus 163 v~~I~G~aGsGKTt~I~----~~~-~~~~~lVlTpT~~aa~~l~~kl~~~--------~~---~~~~~~~V~T~dsfL~- 225 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL----SRV-NFEEDLILVPGRQAAEMIRRRANAS--------GI---IVATKDNVRTVDSFLM- 225 (446)
T ss_dssp EEEEEECTTSCHHHHHH----HHC-CTTTCEEEESCHHHHHHHHHHHTTT--------SC---CCCCTTTEEEHHHHHH-
T ss_pred EEEEEcCCCCCHHHHHH----HHh-ccCCeEEEeCCHHHHHHHHHHhhhc--------Cc---cccccceEEEeHHhhc-
Confidence 35799999999998642 222 2357899999999999888777432 10 1223456899987642
Q ss_pred HhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccC
Q 002357 173 LYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSAT 222 (931)
Q Consensus 173 l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT 222 (931)
.......-..++||+||+-.+. ...+..++...+. .+++++.=+
T Consensus 226 -~~~~~~~~~~d~liiDE~sm~~----~~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 226 -NYGKGARCQFKRLFIDEGLMLH----TGCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp -TTTSSCCCCCSEEEEETGGGSC----HHHHHHHHHHTTC-SEEEEEECT
T ss_pred -CCCCCCCCcCCEEEEeCcccCC----HHHHHHHHHhCCC-CEEEEecCc
Confidence 2222112248999999998663 2334444444443 566665433
No 106
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.77 E-value=0.0035 Score=62.38 Aligned_cols=108 Identities=10% Similarity=0.115 Sum_probs=60.6
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEIL 169 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L 169 (931)
.|+-.++.+|+|+|||..++-.+.++...+.+|+++.|.+. .. ++.-.+.+.. .+. -..+.+.+++.+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d---~r-------~~~~~i~s~~-g~~-~~a~~~~~~~~i 74 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEID---NR-------YSKEDVVSHM-GEK-EQAVAIKNSREI 74 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-----------------CEEECTT-SCE-EECEEESSSTHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC---cc-------chHHHHHhhc-CCc-eeeEeeCCHHHH
Confidence 34567889999999999887777777788999999999842 11 1111111110 000 011223333333
Q ss_pred HHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEe
Q 002357 170 RGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFL 219 (931)
Q Consensus 170 ~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~l 219 (931)
...+. .++++|++||++.+.. ..++.+-...+....+++.
T Consensus 75 ~~~~~------~~~dvViIDEaqfl~~----~~v~~l~~l~~~~~~Vi~~ 114 (191)
T 1xx6_A 75 LKYFE------EDTEVIAIDEVQFFDD----EIVEIVNKIAESGRRVICA 114 (191)
T ss_dssp HHHCC------TTCSEEEECSGGGSCT----HHHHHHHHHHHTTCEEEEE
T ss_pred HHHHh------ccCCEEEEECCCCCCH----HHHHHHHHHHhCCCEEEEE
Confidence 33221 2589999999999742 2244333334445555554
No 107
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.73 E-value=0.0094 Score=58.54 Aligned_cols=119 Identities=8% Similarity=0.068 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHh---------cCCcEEEEcCCCCCcHHHHHHHHHHHH-hCCCEEEEEcCchhhHHHHHHHHHHhcCCeE
Q 002357 78 DPFQRVSVACLE---------RNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFKDVG 147 (931)
Q Consensus 78 ~~~Q~~ai~~l~---------~g~~vlv~apTGsGKTl~~~l~i~~~l-~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg 147 (931)
++.|++++..+. .|+.+++.+|+|+|||..+........ ..|..++|+. ..++..+....+....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~---- 90 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD-TKDLIFRLKHLMDEGK---- 90 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE-HHHHHHHHHHHHHHTC----
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHHHHHHhcCch----
Confidence 567888887652 578899999999999987644333332 4565666543 3344444333322110
Q ss_pred EEecccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCC-CCCchHHHHHHHHhc-CCCceEEEeccCCCC
Q 002357 148 LMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMK-DRERGVVWEESIIFL-PPAIKMVFLSATMSN 225 (931)
Q Consensus 148 ~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~-~~~~g~~~~~ii~~l-~~~~q~v~lSAT~~n 225 (931)
.. .+... +.+.+++|+||++... +......+..++... .....+|+.|-..+.
T Consensus 91 -----------~~-------~~~~~-------~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 91 -----------DT-------KFLKT-------VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp -----------CS-------HHHHH-------HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred -----------HH-------HHHHH-------hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 00 11111 2256899999999643 221122333344333 245566666655554
Q ss_pred h
Q 002357 226 A 226 (931)
Q Consensus 226 ~ 226 (931)
.
T Consensus 146 ~ 146 (180)
T 3ec2_A 146 R 146 (180)
T ss_dssp C
T ss_pred H
Confidence 3
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.73 E-value=0.0028 Score=62.79 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=32.3
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCch
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLK 129 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~k 129 (931)
.|.-.++.+|+|+|||..+.-.+......+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 3566889999999999987666666667789999999984
No 109
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.012 Score=63.24 Aligned_cols=123 Identities=8% Similarity=0.081 Sum_probs=65.2
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhC-------CCEEEEEcCch-hhHHHHHHHHHHhcCCeEEEecccccCCCCCe
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRD-------KQRVIYTSPLK-ALSNQKYRELHQEFKDVGLMTGDVTLSPNASC 161 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~-------~~rvl~l~P~k-aL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~I 161 (931)
.+.++++.||+|+|||.++-..+...... ...++++--.. .=..+.+..+...+.... ...
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~-------~~~---- 112 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKEN-------LCG---- 112 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC---------C----
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCC-------CCc----
Confidence 45789999999999999875554433221 22455554221 112234444433332110 000
Q ss_pred eEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEeccCCCChH
Q 002357 162 LVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLSATMSNAT 227 (931)
Q Consensus 162 lV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~lSAT~~n~~ 227 (931)
-.+.+.|..++......-...-+||+||+|++.+ ..++..++... ...+-+|+.++|+.+..
T Consensus 113 -~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~---q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 113 -DISLEALNFYITNVPKAKKRKTLILIQNPENLLS---EKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp -CCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC---THHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred -hHHHHHHHHHHHHhhhccCCceEEEEecHHHhhc---chHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 0123445554443211223566899999999982 23444444321 23566888899986554
No 110
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.27 E-value=0.0049 Score=58.72 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=24.6
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
.|+.+++.+|+|+|||..+..........|.+++|+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 6889999999999999875443333323344455543
No 111
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.17 E-value=0.01 Score=65.90 Aligned_cols=37 Identities=27% Similarity=0.312 Sum_probs=24.3
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhC------CCEEEEEc
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRD------KQRVIYTS 126 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~------~~rvl~l~ 126 (931)
.+.++++.||+|+|||..+.......... +..++++.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 35689999999999998764433322221 45566664
No 112
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.06 E-value=0.0096 Score=59.84 Aligned_cols=40 Identities=15% Similarity=0.043 Sum_probs=32.8
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchh
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKA 130 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~ka 130 (931)
|.-.++.++.|+|||..++-.+.++...+.+|+++.|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 4456789999999999887777788889999999999864
No 113
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.05 E-value=0.021 Score=61.95 Aligned_cols=76 Identities=22% Similarity=0.357 Sum_probs=45.9
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILR 170 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~ 170 (931)
+..+++.||+|+|||..+..........+.+++++... .+..+....+.. ...+.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~----------------------~~~~~~~ 93 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD-DFAQAMVEHLKK----------------------GTINEFR 93 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH-HHHHHHHHHHHH----------------------TCHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH-HHHHHHHHHHHc----------------------CcHHHHH
Confidence 36899999999999988654433333446777777643 333333332221 0112222
Q ss_pred HHHhcCccccCcccEEEEeccccCCC
Q 002357 171 GMLYRGSEVLKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 171 ~~l~~~~~~l~~l~~vViDEaH~l~~ 196 (931)
..+ .+.++++|||+|.+..
T Consensus 94 ~~~-------~~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 94 NMY-------KSVDLLLLDDVQFLSG 112 (324)
T ss_dssp HHH-------HTCSEEEEECGGGGTT
T ss_pred HHh-------cCCCEEEEcCcccccC
Confidence 221 2367999999999874
No 114
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.03 E-value=0.011 Score=71.81 Aligned_cols=104 Identities=14% Similarity=0.163 Sum_probs=75.0
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC----CCEEEEEcCchhhHHHHHHHHHHhcCCeEEEec
Q 002357 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTG 151 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~----~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tG 151 (931)
.|++-|++|+.. .+..++|.|+.|||||.+...-+...+.. ..++++++.|+..+.++.+++....+.-
T Consensus 11 ~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~----- 83 (724)
T 1pjr_A 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGA----- 83 (724)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGG-----
T ss_pred hCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhccc-----
Confidence 489999999975 35689999999999999887777777653 2589999999999999999998875421
Q ss_pred ccccCCCCCeeEecHHHHHHHHhcC-ccccC-cccEEEEeccc
Q 002357 152 DVTLSPNASCLVMTTEILRGMLYRG-SEVLK-EVAWVIFDEIH 192 (931)
Q Consensus 152 d~~~~~~~~IlV~Tpe~L~~~l~~~-~~~l~-~l~~vViDEaH 192 (931)
...+.|+|...+...+.+. ...+. .-++-|+|+.+
T Consensus 84 ------~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d 120 (724)
T 1pjr_A 84 ------AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTD 120 (724)
T ss_dssp ------GTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHH
T ss_pred ------ccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHH
Confidence 1347899998876444322 11110 12356777654
No 115
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.01 E-value=0.021 Score=67.17 Aligned_cols=116 Identities=19% Similarity=0.211 Sum_probs=80.3
Q ss_pred CCCHHHHHHHHHHhc--CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccc
Q 002357 76 ELDPFQRVSVACLER--NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDV 153 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~~--g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~ 153 (931)
.+|.-|.+|+..+.. ....++.|+-|.|||.+.-+++.... .+++|++|+.+=+...++-..+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~---~~~~vtAP~~~a~~~l~~~~~~------------ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA---GRAIVTAPAKASTDVLAQFAGE------------ 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS---SCEEEECSSCCSCHHHHHHHGG------------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH---hCcEEECCCHHHHHHHHHHhhC------------
Confidence 589999999998855 34578999999999987666666553 3579999999876654332211
Q ss_pred ccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCCChH
Q 002357 154 TLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNAT 227 (931)
Q Consensus 154 ~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n~~ 227 (931)
.+-+..|+.+.. ...+.+++|||||=.+. .+.+..++. ....++||.|+...+
T Consensus 240 ------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~----~~~~v~~~tTv~GYE 292 (671)
T 2zpa_A 240 ------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVS----RFPRTLLTTTVQGYE 292 (671)
T ss_dssp ------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHT----TSSEEEEEEEBSSTT
T ss_pred ------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHh----hCCeEEEEecCCcCC
Confidence 144567765431 23468999999999886 444444443 344688899986544
No 116
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.99 E-value=0.023 Score=63.02 Aligned_cols=36 Identities=25% Similarity=0.218 Sum_probs=24.7
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhC--------CCEEEEEc
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRD--------KQRVIYTS 126 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~--------~~rvl~l~ 126 (931)
...+++.||+|+|||..+.......... +..++++.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 4579999999999998864433332222 66777775
No 117
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.96 E-value=0.0079 Score=59.46 Aligned_cols=82 Identities=9% Similarity=-0.016 Sum_probs=53.2
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCc---hhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecH
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL---KALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT 166 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~---kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp 166 (931)
.|+-.++.+|+|||||.-.+-++......+.+++|+.|. +.- +.+...+..... .+.+.+.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~-~~i~S~~g~~~~---------------A~~~~~~ 82 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTME---------------ALPACLL 82 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGG-GSCCHHHHHHSE---------------EEEESSG
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccch-hhhhhccCCccc---------------ceecCCH
Confidence 356678999999999987777787777889999999988 543 222222221111 1112222
Q ss_pred HHHHHHHhcCccccCcccEEEEeccccC
Q 002357 167 EILRGMLYRGSEVLKEVAWVIFDEIHYM 194 (931)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vViDEaH~l 194 (931)
+.+... .+++++|++|||+.+
T Consensus 83 ~d~~~~-------~~~~DvIlIDEaQFf 103 (195)
T 1w4r_A 83 RDVAQE-------ALGVAVIGIDEGQFF 103 (195)
T ss_dssp GGGHHH-------HHTCSEEEESSGGGC
T ss_pred HHHHHh-------ccCCCEEEEEchhhh
Confidence 222221 235899999999998
No 118
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.89 E-value=0.017 Score=69.61 Aligned_cols=86 Identities=20% Similarity=0.173 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC----CCEEEEEcCchhhHHHHHHHHHHhcCCeEEEec
Q 002357 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTG 151 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~----~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tG 151 (931)
.|++-|++|+.. .+..++|.|+.|||||.+...-+...+.. ..++++++.|+..+.++.+++....+..
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~----- 74 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRK----- 74 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTT-----
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcc-----
Confidence 488999999975 36789999999999999877666665543 3689999999999999999998876421
Q ss_pred ccccCCCCCeeEecHHHHHHHH
Q 002357 152 DVTLSPNASCLVMTTEILRGML 173 (931)
Q Consensus 152 d~~~~~~~~IlV~Tpe~L~~~l 173 (931)
....+.|+|...+...+
T Consensus 75 -----~~~~~~v~Tfhs~~~~i 91 (673)
T 1uaa_A 75 -----EARGLMISTFHTLGLDI 91 (673)
T ss_dssp -----TTTTSEEEEHHHHHHHH
T ss_pred -----cccCCEEEeHHHHHHHH
Confidence 12358899998876544
No 119
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.58 E-value=0.019 Score=58.73 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=26.1
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcC
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P 127 (931)
.+..+++.||+|+|||..+..........+..++++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~ 88 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL 88 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 46789999999999998765443333344555655543
No 120
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.55 E-value=0.07 Score=53.17 Aligned_cols=35 Identities=9% Similarity=0.054 Sum_probs=24.9
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
.++++.+|+|+|||..+..........+.+++++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 78999999999999986544333444566666553
No 121
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.49 E-value=0.015 Score=74.73 Aligned_cols=100 Identities=13% Similarity=0.093 Sum_probs=69.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCC------CEEEEEcCchhhHHHHHHHHHHhcCCe
Q 002357 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK------QRVIYTSPLKALSNQKYRELHQEFKDV 146 (931)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~------~rvl~l~P~kaL~~Q~~~~l~~~~~~v 146 (931)
.+.++++-|.++|.. .+.+++|.|..|||||.+..--++..+..+ .+++++++|++.++++.+++....+..
T Consensus 7 ~~~~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~ 84 (1232)
T 3u4q_A 7 ADSTWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKE 84 (1232)
T ss_dssp ---CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHHH
Confidence 456799999999975 478999999999999999877777777553 489999999999999999988765411
Q ss_pred EEEecc-ccc----CCCCCeeEecHHHHHHHHh
Q 002357 147 GLMTGD-VTL----SPNASCLVMTTEILRGMLY 174 (931)
Q Consensus 147 g~~tGd-~~~----~~~~~IlV~Tpe~L~~~l~ 174 (931)
..-..+ ..+ ..-..+-|+|...+...+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~i~T~hsf~~~~l 117 (1232)
T 3u4q_A 85 LVQRPGSLHIRRQLSLLNRASISTLHSFCLQVL 117 (1232)
T ss_dssp HHHSTTCHHHHHHHHHTTTSEEECHHHHHHHHH
T ss_pred hhcCcchHHHHHHHhccCCCeEEeHHHHHHHHH
Confidence 000000 000 0013567899988765443
No 122
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.49 E-value=0.063 Score=58.45 Aligned_cols=133 Identities=11% Similarity=0.045 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHH----hcCC---cEEEEcCCCCCcHHHHHHHHHHHHh-CCCEEEEEcCchhhHHHHHHHHHH-hcCCeE
Q 002357 77 LDPFQRVSVACL----ERNE---SVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQ-EFKDVG 147 (931)
Q Consensus 77 l~~~Q~~ai~~l----~~g~---~vlv~apTGsGKTl~~~l~i~~~l~-~~~rvl~l~P~kaL~~Q~~~~l~~-~~~~vg 147 (931)
+.|||.+++..+ .+|+ .+++.||.|+|||..+.. ++..+. ......--+..-.- ++.+.. ..+++.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~-la~~l~~~~~~~~~~c~~c~~----c~~~~~~~~~d~~ 77 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYLLCQQPQGHKSCGHCRG----CQLMQAGTHPDYY 77 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHHTCSSCBTTBCCSCSHH----HHHHHHTCCTTEE
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH-HHHHHhCCCCCCCCCCCCCHH----HHHHhcCCCCCEE
Confidence 467888887655 3443 489999999999987754 333332 21110000111111 122222 123454
Q ss_pred EEecccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcC---CCceEEEeccC
Q 002357 148 LMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP---PAIKMVFLSAT 222 (931)
Q Consensus 148 ~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~---~~~q~v~lSAT 222 (931)
.+.+.. .+..+-|.....+...+...+ ......++|+||+|.|.. ...+.++..+. .+..+|+.|..
T Consensus 78 ~~~~~~---~~~~~~i~~ir~l~~~~~~~~-~~~~~kvviIdead~l~~----~a~naLLk~lEep~~~~~~Il~t~~ 147 (334)
T 1a5t_A 78 TLAPEK---GKNTLGVDAVREVTEKLNEHA-RLGGAKVVWVTDAALLTD----AAANALLKTLEEPPAETWFFLATRE 147 (334)
T ss_dssp EECCCT---TCSSBCHHHHHHHHHHTTSCC-TTSSCEEEEESCGGGBCH----HHHHHHHHHHTSCCTTEEEEEEESC
T ss_pred EEeccc---cCCCCCHHHHHHHHHHHhhcc-ccCCcEEEEECchhhcCH----HHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 444321 011222222222323332222 245688999999999973 23444555442 34455555433
No 123
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.30 E-value=0.041 Score=59.17 Aligned_cols=36 Identities=6% Similarity=0.015 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHH-hCCCEEEEEc
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTS 126 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l-~~~~rvl~l~ 126 (931)
+.++++.||||+|||..+........ ..+.+++|+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 68999999999999988754444445 5677777654
No 124
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.30 E-value=0.032 Score=56.63 Aligned_cols=41 Identities=10% Similarity=0.029 Sum_probs=35.3
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchh
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKA 130 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~ka 130 (931)
.|.-.++.++.|+|||..++-.+.++...+.+++++.|.+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC
Confidence 45667889999999999888788888889999999999874
No 125
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.22 E-value=0.036 Score=61.43 Aligned_cols=114 Identities=11% Similarity=0.139 Sum_probs=56.8
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHhC--CCEEEEEc-CchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTS-PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEIL 169 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~~--~~rvl~l~-P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L 169 (931)
.+++.||+|+|||..+.. +...+.. +..++++. +...-..+.+..+...++. ... ... .+.+.+
T Consensus 46 ~~li~G~~G~GKTtl~~~-l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~--------~~~-~~~---~~~~~~ 112 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRK-LWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNI--------PFP-RRG---LSRDEF 112 (389)
T ss_dssp EEEEECCTTSSHHHHHHH-HHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTC--------CCC-SSC---CCHHHH
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCc--------cCC-CCC---CCHHHH
Confidence 799999999999988643 3444433 45677765 2211123334443333321 000 000 122333
Q ss_pred HHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcC-------CCceEEEeccCC
Q 002357 170 RGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP-------PAIKMVFLSATM 223 (931)
Q Consensus 170 ~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~-------~~~q~v~lSAT~ 223 (931)
...+...........+||+||+|.+. ......+...+. .++.+|+.|..+
T Consensus 113 ~~~l~~~l~~~~~~~vlilDE~~~l~----~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 113 LALLVEHLRERDLYMFLVLDDAFNLA----PDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHHHHHHTTCCEEEEEETGGGSC----HHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHHHHhhcCCeEEEEEECccccc----hHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 32221110112335689999999993 334444444442 255566655443
No 126
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.20 E-value=0.023 Score=55.41 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCCCcHHHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~ 111 (931)
+.++++.+|+|+|||..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~ 63 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGL 63 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 568999999999999876433
No 127
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.01 E-value=0.012 Score=55.57 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=18.6
Q ss_pred hcCCcEEEEcCCCCCcHHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~ 109 (931)
..+.++++.+|+|+|||.++.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 567899999999999999874
No 128
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.96 E-value=0.081 Score=59.90 Aligned_cols=77 Identities=13% Similarity=0.278 Sum_probs=45.4
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHh--CCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFR--DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~--~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (931)
+..+++.||+|+|||..+......... .+.+++|+... .+.++....+... ..+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~-~~~~~~~~~~~~~----------------------~~~~ 186 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE-KFLNDLVDSMKEG----------------------KLNE 186 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH-HHHHHHHHHHHTT----------------------CHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH-HHHHHHHHHHHcc----------------------cHHH
Confidence 358999999999999876433322222 26677776554 3344333333210 1122
Q ss_pred HHHHHhcCccccC-cccEEEEeccccCCCC
Q 002357 169 LRGMLYRGSEVLK-EVAWVIFDEIHYMKDR 197 (931)
Q Consensus 169 L~~~l~~~~~~l~-~l~~vViDEaH~l~~~ 197 (931)
+... +. +.+++++||+|.+.+.
T Consensus 187 ~~~~-------~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 187 FREK-------YRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp HHHH-------HTTTCSEEEEECGGGGSSC
T ss_pred HHHH-------hcCCCCEEEEeCcccccCC
Confidence 2221 22 5689999999999863
No 129
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.93 E-value=0.059 Score=56.35 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=18.4
Q ss_pred hcCCcEEEEcCCCCCcHHHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l 110 (931)
..+.++++.+|+|+|||.++..
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~ 48 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASR 48 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHHHH
Confidence 4568999999999999987643
No 130
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.90 E-value=0.1 Score=50.81 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCCcHHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l 110 (931)
+.++++.||+|+|||..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~ 62 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEG 62 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 36799999999999987643
No 131
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.79 E-value=0.12 Score=50.96 Aligned_cols=40 Identities=23% Similarity=0.128 Sum_probs=34.9
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCch
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLK 129 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~k 129 (931)
....++|..++|.|||.+++-..++++..|.+|+++.=.+
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 3458999999999999999888888999999999996655
No 132
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.77 E-value=0.058 Score=53.85 Aligned_cols=39 Identities=21% Similarity=0.167 Sum_probs=25.2
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHH-----hCCCEEEEEcCchhh
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAF-----RDKQRVIYTSPLKAL 131 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l-----~~~~rvl~l~P~kaL 131 (931)
-.++.|+.|||||..+..-+.... ..|.+.+|++..-.|
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL 50 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGL 50 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTB
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCc
Confidence 468999999999997654433332 334366666665444
No 133
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.69 E-value=0.035 Score=55.68 Aligned_cols=42 Identities=14% Similarity=0.102 Sum_probs=32.5
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchh
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKA 130 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~ka 130 (931)
..|.-.++.+|.|+|||...+-.+.+....+.+++++.|.+.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 446667899999999998766666677778899999999764
No 134
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.57 E-value=0.068 Score=58.95 Aligned_cols=36 Identities=22% Similarity=0.471 Sum_probs=24.4
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhC---CCEEEEEc
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTS 126 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~---~~rvl~l~ 126 (931)
+..+++.||+|+|||..+.......... +..++++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 5689999999999998764433222222 55666665
No 135
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.48 E-value=0.016 Score=54.54 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=18.6
Q ss_pred HHhcCCcEEEEcCCCCCcHHHH
Q 002357 87 CLERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 87 ~l~~g~~vlv~apTGsGKTl~~ 108 (931)
....+.++++.+|+|+|||.++
T Consensus 23 ~~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHHH
T ss_pred HhCCCCcEEEECCCCccHHHHH
Confidence 3456789999999999999875
No 136
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.37 E-value=0.51 Score=52.81 Aligned_cols=131 Identities=12% Similarity=0.064 Sum_probs=68.0
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc--CchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEIL 169 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~--P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L 169 (931)
..+++++|+|+|||..+.-.+......+.+|+++. +.+.-+.++...+....+ +........ ..|..+
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~g-v~~~~~~~~---------~dp~~i 167 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIG-VQVYGEPNN---------QNPIEI 167 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTT-CCEECCTTC---------SCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcC-Cceeecccc---------CCHHHH
Confidence 45788999999999875443333345677776655 444433333333333322 222222111 123322
Q ss_pred -HHHHhcCccccCcccEEEEeccccCC---CCCchHHHHHHHHhcCCCceEEEeccCCC-ChHHHHHHHH
Q 002357 170 -RGMLYRGSEVLKEVAWVIFDEIHYMK---DRERGVVWEESIIFLPPAIKMVFLSATMS-NATQFAEWIC 234 (931)
Q Consensus 170 -~~~l~~~~~~l~~l~~vViDEaH~l~---~~~~g~~~~~ii~~l~~~~q~v~lSAT~~-n~~e~~~~l~ 234 (931)
...+... ...+.++||+|++-++. +...-..+..+...+.++.-++.++|+.. +..+.+..+.
T Consensus 168 ~~~al~~a--~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 168 AKKGVDIF--VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp HHHHHHHT--TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred HHHHHHHH--HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 2223221 12478999999998654 22222233344445555666777777764 3334444444
No 137
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.32 E-value=0.1 Score=55.89 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCCcHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (931)
.++++.||+|+|||.++.
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 479999999999998864
No 138
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.25 E-value=0.18 Score=52.93 Aligned_cols=18 Identities=44% Similarity=0.538 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCCcHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (931)
.++++.+|+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 579999999999999764
No 139
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.68 E-value=0.067 Score=57.36 Aligned_cols=22 Identities=27% Similarity=0.444 Sum_probs=18.4
Q ss_pred hcCCcEEEEcCCCCCcHHHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l 110 (931)
..+.++++.+|||+|||.++-.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~ 44 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARA 44 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHH
Confidence 4567899999999999988643
No 140
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.64 E-value=0.23 Score=57.50 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=24.1
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCc
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL 128 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~ 128 (931)
+.+++.||+|+|||.++. +++..+ +..++.+...
T Consensus 78 ~~lLL~GppGtGKTtla~-~la~~l--~~~~i~in~s 111 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH-LVAQEL--GYDILEQNAS 111 (516)
T ss_dssp SEEEEECSTTSSHHHHHH-HHHHHT--TCEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHH-HHHHHc--CCCEEEEeCC
Confidence 689999999999998764 333333 5666666543
No 141
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.55 E-value=0.29 Score=48.86 Aligned_cols=19 Identities=37% Similarity=0.354 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCCcHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l 110 (931)
.++++.||+|+|||..+..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~ 57 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIA 57 (226)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3699999999999987643
No 142
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.49 E-value=0.15 Score=57.78 Aligned_cols=107 Identities=19% Similarity=0.086 Sum_probs=59.2
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHh-CCCEEEEEcCchhhHHHHHHHHHHhcCCe---EEEecccccC--------
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQEFKDV---GLMTGDVTLS-------- 156 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~-~~~rvl~l~P~kaL~~Q~~~~l~~~~~~v---g~~tGd~~~~-------- 156 (931)
..|.-++++|++|+|||..+.-.+..... .+.+|+|++.--. ..|...++......+ .+..|..+..
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a 276 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDV 276 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHHHHHTTCCTTTCCGGGCCHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhCCCCCHHHHHHHHHH
Confidence 45677899999999999876554444443 5778999876532 335554443222111 1112221100
Q ss_pred ----CCCCeeEe-----cHHHHHHHHhcCccccCcccEEEEeccccCCCC
Q 002357 157 ----PNASCLVM-----TTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDR 197 (931)
Q Consensus 157 ----~~~~IlV~-----Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~ 197 (931)
...++.+. |++.+...+.+-.. -.++++||+|..+.+...
T Consensus 277 ~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~-~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 277 ASRLSEAPIYIDDTPDLTLMEVRARARRLVS-QNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp HHHHHTSCEEEECCTTCBHHHHHHHHHHHHH-HSCCCEEEEECGGGCBCC
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEcChhhcCCC
Confidence 01234442 45555544332111 125899999999998743
No 143
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.33 E-value=0.19 Score=50.56 Aligned_cols=38 Identities=18% Similarity=0.100 Sum_probs=28.3
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCch
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLK 129 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~k 129 (931)
..|.-+++.+|+|+|||..+...+. ..+.+++|+.-..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 3567889999999999987654443 4577888887543
No 144
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.32 E-value=0.053 Score=58.76 Aligned_cols=107 Identities=19% Similarity=0.213 Sum_probs=60.5
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeE---EEecccccC---------
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVG---LMTGDVTLS--------- 156 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg---~~tGd~~~~--------- 156 (931)
..|.-+++.|++|+|||..+.-.+......+.+|+|++.--. ..|...++......+. +.+|..+..
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms-~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~ 122 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS-AEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCF 122 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC-HHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC-HHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 566789999999999998776555555557889999986532 3454444433221111 011111000
Q ss_pred ---CCCCeeEe-----cHHHHHHHHhcCccccCcccEEEEeccccCCC
Q 002357 157 ---PNASCLVM-----TTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 157 ---~~~~IlV~-----Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~ 196 (931)
.+.++.|. |++.++..+.+-......+++||+|-.+.|..
T Consensus 123 ~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~ 170 (338)
T 4a1f_A 123 DHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSG 170 (338)
T ss_dssp HHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCT
T ss_pred HHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcC
Confidence 01233331 45555554433211112689999999998864
No 145
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.21 E-value=0.11 Score=55.91 Aligned_cols=40 Identities=8% Similarity=0.017 Sum_probs=23.0
Q ss_pred CcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEec
Q 002357 181 KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLS 220 (931)
Q Consensus 181 ~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lS 220 (931)
....++|+||+|.+........+...+...+.+.++|+.|
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 4678999999999862111222223333344566666644
No 146
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.93 E-value=0.25 Score=52.03 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=17.1
Q ss_pred cCCcEEEEcCCCCCcHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~ 109 (931)
.+.++++.||+|+|||..+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 45789999999999998763
No 147
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.87 E-value=0.55 Score=47.38 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=28.0
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcC
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P 127 (931)
..|+.+++.+|+|+|||..+...+......+.+++|+..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 457789999999999998765444344445667777764
No 148
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.82 E-value=0.46 Score=50.99 Aligned_cols=107 Identities=15% Similarity=0.133 Sum_probs=61.1
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeE---EEecccccCC-------
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVG---LMTGDVTLSP------- 157 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg---~~tGd~~~~~------- 157 (931)
+..|.-++++|++|+|||..+.-.+.....++.+++|++-- .=..|...++......+. +..|...++.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE-~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~ 143 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLS 143 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS-SCHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHH
Confidence 35677899999999999987665555555667899999855 334455555544322211 1112100100
Q ss_pred -------CCCeeE-----ecHHHHHHHHhcCccccCccc--EEEEeccccCCC
Q 002357 158 -------NASCLV-----MTTEILRGMLYRGSEVLKEVA--WVIFDEIHYMKD 196 (931)
Q Consensus 158 -------~~~IlV-----~Tpe~L~~~l~~~~~~l~~l~--~vViDEaH~l~~ 196 (931)
..++.+ .|++.+...+.+... -..++ +||+|-.+.+..
T Consensus 144 ~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~-~~~~~~~lVVID~l~~l~~ 195 (315)
T 3bh0_A 144 MAIGEISNSNINIFDKAGQSVNYIWSKTRQTKR-KNPGKRVIVMIDYLQLLEP 195 (315)
T ss_dssp HHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHH-TSSSCCEEEEEECGGGSBC
T ss_pred HHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCeEEEEeCchhcCC
Confidence 123433 245555544432111 12578 999999998863
No 149
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.81 E-value=1.1 Score=47.38 Aligned_cols=125 Identities=14% Similarity=0.155 Sum_probs=64.8
Q ss_pred cCCcEEEEcCCCCCcHHHHHH-HHHHHHhCCCEEEEEc--CchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecH
Q 002357 90 RNESVLVSAHTSAGKTAVAEY-AIAMAFRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT 166 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l-~i~~~l~~~~rvl~l~--P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp 166 (931)
+++.+++.+|+|+|||..+.. +.......|.+|+++. |.+.-+.++...+....+ +.. +...++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~g-l~~------------~~~~~~ 170 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQ-APL------------EVCYTK 170 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTT-CCC------------CBCSSH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcC-CCe------------EecCCH
Confidence 356788999999999986543 3333334676776654 333333333333333221 100 011245
Q ss_pred HHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcC---CCceEEEeccCCCChHHHHHHHH
Q 002357 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP---PAIKMVFLSATMSNATQFAEWIC 234 (931)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~---~~~q~v~lSAT~~n~~e~~~~l~ 234 (931)
..+...+.. +.+.++||+|-+-..... ...+.++...+. +..-++.++||. +..++.++..
T Consensus 171 ~~l~~al~~----~~~~dlvIiDT~G~~~~~--~~~~~el~~~l~~~~~~~~~lVl~at~-~~~~~~~~~~ 234 (296)
T 2px0_A 171 EEFQQAKEL----FSEYDHVFVDTAGRNFKD--PQYIDELKETIPFESSIQSFLVLSATA-KYEDMKHIVK 234 (296)
T ss_dssp HHHHHHHHH----GGGSSEEEEECCCCCTTS--HHHHHHHHHHSCCCTTEEEEEEEETTB-CHHHHHHHTT
T ss_pred HHHHHHHHH----hcCCCEEEEeCCCCChhh--HHHHHHHHHHHhhcCCCeEEEEEECCC-CHHHHHHHHH
Confidence 555554442 367899999966544321 233444444443 223367776774 3344445543
No 150
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.76 E-value=0.22 Score=55.48 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=23.2
Q ss_pred CCcEEE--EcCCCCCcHHHHHHHHHHHHh------CCCEEEEEc
Q 002357 91 NESVLV--SAHTSAGKTAVAEYAIAMAFR------DKQRVIYTS 126 (931)
Q Consensus 91 g~~vlv--~apTGsGKTl~~~l~i~~~l~------~~~rvl~l~ 126 (931)
+..+++ .||+|+|||..+......... .+..++++.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 356888 999999999876544332222 144566665
No 151
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.67 E-value=0.36 Score=51.72 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=15.3
Q ss_pred cEEEEcCCCCCcHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~ 109 (931)
++++.||+|+|||..+.
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 79999999999998764
No 152
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.64 E-value=0.19 Score=54.31 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=22.0
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
..++++.+|+|+|||..+.. +...+ +..++++.
T Consensus 51 ~~~vLl~GppGtGKT~la~a-ia~~~--~~~~~~v~ 83 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKA-VATEA--NSTFFSVS 83 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHH-HHHHH--TCEEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHH--CCCEEEEc
Confidence 35799999999999987643 33322 44555543
No 153
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.58 E-value=0.36 Score=52.85 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=19.6
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhC
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRD 118 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~ 118 (931)
+.+++.||+|+|||.++. ++...+..
T Consensus 71 ~~vLl~GppGtGKT~la~-~la~~l~~ 96 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM-GMAQALGP 96 (368)
T ss_dssp CEEEEEESTTSSHHHHHH-HHHHHHCS
T ss_pred CEEEEECCCCCCHHHHHH-HHHHHhcc
Confidence 579999999999999764 44444443
No 154
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.56 E-value=0.3 Score=52.85 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=16.4
Q ss_pred CcEEEEcCCCCCcHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l 110 (931)
.++++.||+|+|||..+..
T Consensus 56 ~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 5899999999999997643
No 155
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.46 E-value=0.24 Score=53.42 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCCcHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (931)
+.+++.||+|+|||..+-
T Consensus 46 ~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp SEEEEESSSSSCHHHHHH
T ss_pred ceEEEECCCCccHHHHHH
Confidence 679999999999998763
No 156
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.46 E-value=0.67 Score=46.72 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=15.4
Q ss_pred cEEEEcCCCCCcHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l 110 (931)
.+++.||+|+|||..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~ 64 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARL 64 (250)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 689999999999987643
No 157
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.38 E-value=0.29 Score=55.62 Aligned_cols=50 Identities=24% Similarity=0.237 Sum_probs=33.9
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHH-hCCCEEEEEcCchhhHHHHHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYREL 139 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l-~~~~rvl~l~P~kaL~~Q~~~~l 139 (931)
..|.-+++.|++|+|||..+...+.... ..+.+|+|++.-.. ..|...++
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s-~~~l~~r~ 251 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS-AQQLVMRM 251 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC-HHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC-HHHHHHHH
Confidence 4667899999999999987655444444 35778999875432 23444443
No 158
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.36 E-value=0.24 Score=54.14 Aligned_cols=90 Identities=20% Similarity=0.136 Sum_probs=55.3
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEe---cH
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVM---TT 166 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~---Tp 166 (931)
.|..+++.+++|+|||..+.-.+......+.+++|+..-..+..+..+. +..+. .++.+. |.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~---~g~~~------------~~l~i~~~~~~ 126 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARK---LGVDI------------DNLLCSQPDTG 126 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHH---TTCCG------------GGCEEECCSSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHH---cCCCh------------hheeeeCCCCH
Confidence 4678999999999999988776666667788999998755444332222 11110 011121 34
Q ss_pred HHHHHHHhcCccccCcccEEEEeccccCC
Q 002357 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
+.+...+..-. .-..+++||||.+..+.
T Consensus 127 e~~~~~~~~l~-~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 127 EQALEICDALA-RSGAVDVIVVDSVAALT 154 (356)
T ss_dssp HHHHHHHHHHH-HHTCCSEEEEECGGGCC
T ss_pred HHHHHHHHHHH-hccCCCEEEEcCHHHhc
Confidence 44444332110 01358899999999875
No 159
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.21 E-value=0.35 Score=54.66 Aligned_cols=106 Identities=15% Similarity=0.125 Sum_probs=60.6
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeE---EEecc--cccC-------
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVG---LMTGD--VTLS------- 156 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg---~~tGd--~~~~------- 156 (931)
..|.-++++|++|+|||..++-.+......+.+|+|++--- =..|...++......+. +.+|. .+..
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm-s~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~~~~~l~~ 273 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM-GKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSM 273 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS-CTTHHHHHHHHHHSCCCHHHHHHTGGGTCCSCHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC-CHHHHHHHHHHHHcCCCHHHHhcccCCCCHHHHHHHHH
Confidence 45678999999999999887665555555688999997653 23344444433221111 11222 1100
Q ss_pred -----CCCCeeE-----ecHHHHHHHHhcCccccCccc--EEEEeccccCCC
Q 002357 157 -----PNASCLV-----MTTEILRGMLYRGSEVLKEVA--WVIFDEIHYMKD 196 (931)
Q Consensus 157 -----~~~~IlV-----~Tpe~L~~~l~~~~~~l~~l~--~vViDEaH~l~~ 196 (931)
...++.| .|++.++..+.+-.. -.+++ +||+|=.+.|..
T Consensus 274 a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~-~~~~~~~lIVID~Lq~~~~ 324 (444)
T 3bgw_A 274 AIGEISNSNINIFDKAGQSVNYIWSKTRQTKR-KNPGKRVIVMIDYLQLLEP 324 (444)
T ss_dssp HHHHHHTSCEEEECCSSCBHHHHHHHHHHHHH-HSCSSCEEEEEECSTTSBC
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEecHHhccC
Confidence 0233443 255656554432111 12688 999999998863
No 160
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.17 E-value=0.24 Score=55.06 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=23.6
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcC
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P 127 (931)
..++++.+|+|+|||.++... ... .+..++++.+
T Consensus 148 ~~~vLL~GppGtGKT~la~ai-a~~--~~~~~~~v~~ 181 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAV-AAE--SNATFFNISA 181 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHH-HHH--TTCEEEEECS
T ss_pred CceEEEECCCCCCHHHHHHHH-HHh--hcCcEEEeeH
Confidence 478999999999999876433 222 3555555554
No 161
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.15 E-value=0.46 Score=49.09 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCCcHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~ 109 (931)
...+++.+|+|+|||..+.
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999998764
No 162
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.88 E-value=0.46 Score=50.29 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=16.8
Q ss_pred CCcEEEEcCCCCCcHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~ 109 (931)
+..+++.||+|+|||..+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 5789999999999998764
No 163
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.71 E-value=0.34 Score=52.82 Aligned_cols=44 Identities=14% Similarity=0.292 Sum_probs=25.9
Q ss_pred cCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCC
Q 002357 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 180 l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~ 224 (931)
..+..++|+||+|.+. ......+...+...+.+..+|+.|-.+.
T Consensus 132 ~~~~~vlilDE~~~L~-~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANSLT-KDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTSSC-HHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccccC-HHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 3467799999999954 2222333444445556666776665543
No 164
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.64 E-value=0.56 Score=47.81 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=28.7
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHh------CCCEEEEEcCch
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFR------DKQRVIYTSPLK 129 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~------~~~rvl~l~P~k 129 (931)
..|.-+.+.+|+|+|||..+...+...+. .+..++|+.-..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 35678999999999999876554443222 256788886543
No 165
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.60 E-value=0.42 Score=51.90 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=18.3
Q ss_pred HHHhcC--CcEEEEcCCCCCcHHHHH
Q 002357 86 ACLERN--ESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 86 ~~l~~g--~~vlv~apTGsGKTl~~~ 109 (931)
..+..+ .++++.||+|+|||..+.
T Consensus 51 ~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 51 KTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp HHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred HHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 334444 569999999999998763
No 166
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.60 E-value=0.28 Score=53.25 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=23.2
Q ss_pred CcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEec
Q 002357 181 KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLS 220 (931)
Q Consensus 181 ~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lS 220 (931)
....++|+||+|.+... ....+..++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 45789999999998632 1122333344445566666554
No 167
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.50 E-value=0.31 Score=53.47 Aligned_cols=90 Identities=17% Similarity=0.074 Sum_probs=55.2
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeE---ecH
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLV---MTT 166 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV---~Tp 166 (931)
.|.-+++.+|+|+|||..+.-.+......+.+|+|+..-..+..... ....-+. .+++| .|.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a---~~~g~d~------------~~l~i~~~~~~ 137 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYA---RALGVNT------------DELLVSQPDNG 137 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHH---HHTTCCG------------GGCEEECCSSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHH---HHcCCCH------------HHceeecCCcH
Confidence 45778999999999999877666666677889999987654433221 1111110 01112 244
Q ss_pred HHHHHHHhcCccccCcccEEEEeccccCC
Q 002357 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
+.+...+..-. .-..+++||||.+..+.
T Consensus 138 e~~l~~l~~l~-~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 138 EQALEIMELLV-RSGAIDVVVVDSVAALT 165 (366)
T ss_dssp HHHHHHHHHHH-TTTCCSEEEEECTTTCC
T ss_pred HHHHHHHHHHH-hcCCCCEEEEeChHHhc
Confidence 55544443211 01358999999999886
No 168
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=91.39 E-value=0.36 Score=51.79 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCCcHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~ 109 (931)
..++++.||+|+|||..+.
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3689999999999998764
No 169
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.38 E-value=0.34 Score=52.87 Aligned_cols=42 Identities=29% Similarity=0.249 Sum_probs=33.9
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhh
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKAL 131 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL 131 (931)
.|+-+++.+|+|+|||..+...+......+.+++|+.--..+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~ 101 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHAL 101 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence 457799999999999998877776777778899998865444
No 170
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.37 E-value=0.58 Score=49.92 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=23.6
Q ss_pred cCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEec
Q 002357 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLS 220 (931)
Q Consensus 180 l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~lS 220 (931)
..+..++|+||+|.|.. ...+.++..+ |++..+|+.+
T Consensus 80 ~~~~kvviIdead~lt~----~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQ----QAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCH----HHHHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCH----HHHHHHHHHHhCCCCCeEEEEEE
Confidence 45789999999999973 3344444433 3455555554
No 171
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.23 E-value=1.1 Score=50.29 Aligned_cols=119 Identities=13% Similarity=0.113 Sum_probs=64.0
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc--CchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHH-
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI- 168 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~--P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~- 168 (931)
..+++++++|+|||..+.-.+......|.+|+++. |.+.-+.++.+.+....+ +.+...+.. ..|..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~g-vpv~~~~~~---------~dp~~i 170 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYH-IEVFGNPQE---------KDAIKL 170 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGT-CEEECCTTC---------CCHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcC-CcEEecCCC---------CCHHHH
Confidence 45788999999999876543333345677887766 556655554444444332 222221111 12332
Q ss_pred HHHHHhcCccccCcccEEEEeccccCCCCCchHHHH---HHHHhcCCCceEEEeccCCC
Q 002357 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWE---ESIIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 169 L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~---~ii~~l~~~~q~v~lSAT~~ 224 (931)
+...+.... -...++||+|.+=+.... ..... .+.....++.-++.++||..
T Consensus 171 ~~~al~~a~--~~~~DvVIIDTaGrl~~d--~~lm~el~~i~~~~~pd~vlLVvDA~~g 225 (443)
T 3dm5_A 171 AKEGVDYFK--SKGVDIIIVDTAGRHKED--KALIEEMKQISNVIHPHEVILVIDGTIG 225 (443)
T ss_dssp HHHHHHHHH--HTTCSEEEEECCCCSSCC--HHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred HHHHHHHHH--hCCCCEEEEECCCcccch--HHHHHHHHHHHHhhcCceEEEEEeCCCc
Confidence 223332211 135899999999655422 22222 22333444555777777764
No 172
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=90.94 E-value=0.25 Score=54.22 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcC
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P 127 (931)
...+++.+|+|+|||.++-.. +.. .+..++++..
T Consensus 117 ~~~vLl~GppGtGKT~la~ai-a~~--~~~~~~~i~~ 150 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCI-ASQ--SGATFFSISA 150 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHH-HHH--TTCEEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHH-HHH--cCCeEEEEeh
Confidence 568999999999999976433 222 2444444433
No 173
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=90.83 E-value=0.83 Score=48.70 Aligned_cols=117 Identities=8% Similarity=-0.039 Sum_probs=68.2
Q ss_pred HHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccce
Q 002357 317 IFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIA 396 (931)
Q Consensus 317 ~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~ 396 (931)
+..++..+.+ .+.+++||++..+.-+-+-..+...++. ..
T Consensus 114 L~~LL~~l~~-~~~kVLIfsq~t~~LDilE~~l~~~~~~---------------------------------------y~ 153 (328)
T 3hgt_A 114 LRDLINLVQE-YETETAIVCRPGRTMDLLEALLLGNKVH---------------------------------------IK 153 (328)
T ss_dssp HHHHHHHHTT-SCEEEEEEECSTHHHHHHHHHHTTSSCE---------------------------------------EE
T ss_pred HHHHHHHHHh-CCCEEEEEECChhHHHHHHHHHhcCCCc---------------------------------------eE
Confidence 3445555543 4579999999999999998888765553 22
Q ss_pred eccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccC-----CCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCC-
Q 002357 397 VHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLN-----MPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRR- 470 (931)
Q Consensus 397 ~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GId-----ip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~- 470 (931)
-+.|..... ++. -.++...+.+.|...+-|+| ....++||..++.||+. .+.+|.+-|+.|.
T Consensus 154 RlDG~~~~~-~~k----~~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~-------~d~iQa~~r~~R~~ 221 (328)
T 3hgt_A 154 RYDGHSIKS-AAA----ANDFSCTVHLFSSEGINFTKYPIKSKARFDMLICLDTTVDTS-------QKDIQYLLQYKRER 221 (328)
T ss_dssp ESSSCCC------------CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEECSTTCCTT-------SHHHHHHHCCC---
T ss_pred eCCCCchhh-hhh----cccCCceEEEEECCCCCCcCcccccCCCCCEEEEECCCCCCC-------ChHHHHHHHHhhhc
Confidence 334442221 111 12445555555766677786 56788899555555542 2368888888887
Q ss_pred -CCCCceEEEEEeCCc
Q 002357 471 -GKDDRGICIIMVDEQ 485 (931)
Q Consensus 471 -G~~~~g~~ii~~~~~ 485 (931)
|+.....+|-++...
T Consensus 222 ~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 222 KGLERYAPIVRLVAIN 237 (328)
T ss_dssp ------CCEEEEEETT
T ss_pred cCCCCcceEEEEeCCC
Confidence 444556677777655
No 174
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.80 E-value=0.65 Score=50.75 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=21.6
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l 125 (931)
...+++.+|+|+|||..+- +++..+ +..++.+
T Consensus 84 ~~~iLL~GppGtGKT~la~-ala~~~--~~~~~~v 115 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK-AVATEA--NSTFFSV 115 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH-HHHHHH--TCEEEEE
T ss_pred CceEEEECCCCCcHHHHHH-HHHHHh--CCCEEEe
Confidence 3579999999999999864 333332 4444444
No 175
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=90.70 E-value=0.28 Score=55.44 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=15.7
Q ss_pred CcEEEEcCCCCCcHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (931)
.++++.+|+|+|||..+.
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 469999999999999764
No 176
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.33 E-value=0.35 Score=51.51 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=21.6
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHH-hCCCEEEEE
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYT 125 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l-~~~~rvl~l 125 (931)
..+++.+|+|+|||.++-. +...+ ..+..++++
T Consensus 48 ~~~ll~G~~GtGKt~la~~-la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKT-LAATLFDTEEAMIRI 81 (311)
T ss_dssp EEEEEESCSSSSHHHHHHH-HHHHHHSCGGGEEEE
T ss_pred eEEEEECCCCcCHHHHHHH-HHHHHcCCCcceEEe
Confidence 4799999999999998743 33333 333334443
No 177
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.28 E-value=1.3 Score=46.43 Aligned_cols=44 Identities=18% Similarity=0.092 Sum_probs=30.2
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC----------CCEEEEEcCchhh
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRD----------KQRVIYTSPLKAL 131 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~----------~~rvl~l~P~kaL 131 (931)
+..|+-+++.+|+|+|||..+...+...... +.+++|++-.-.+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~ 80 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP 80 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH
Confidence 5678889999999999998765444322221 3578887755433
No 178
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.26 E-value=0.16 Score=54.90 Aligned_cols=42 Identities=10% Similarity=0.061 Sum_probs=31.3
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhC------CCEEEEEcCchhh
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRD------KQRVIYTSPLKAL 131 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~------~~rvl~l~P~kaL 131 (931)
.|.-+++.||+|+|||..+...+...... +.+++|+.--..+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~ 153 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTF 153 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCC
Confidence 45788999999999998776555554433 6789999876544
No 179
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=90.16 E-value=0.47 Score=51.71 Aligned_cols=44 Identities=27% Similarity=0.199 Sum_probs=34.4
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQ 134 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q 134 (931)
|.-+++.+|+|+|||..+...+......+.+|+|+..-..+...
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ 104 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV 104 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH
Confidence 56789999999999988766666666678889999877655443
No 180
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.43 E-value=0.84 Score=48.66 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=15.4
Q ss_pred cEEEEcCCCCCcHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l 110 (931)
++++.||+|+|||..+..
T Consensus 44 ~~ll~G~~G~GKt~la~~ 61 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHC 61 (323)
T ss_dssp CEEEECSTTSSHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHH
Confidence 599999999999987643
No 181
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.30 E-value=0.93 Score=49.51 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=17.3
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAF 116 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l 116 (931)
.+++.||+|+|||..+. .+...+
T Consensus 40 ~~ll~G~~G~GKT~la~-~la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR-LLAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHHHh
Confidence 47999999999998764 334444
No 182
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.26 E-value=0.56 Score=49.77 Aligned_cols=32 Identities=16% Similarity=0.052 Sum_probs=21.6
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
..+++.+|+|+|||..+.. ++..+ +..++++.
T Consensus 37 ~~lLl~GppGtGKT~la~a-iA~~l--~~~~i~v~ 68 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCEL-VFRKM--GINPIMMS 68 (293)
T ss_dssp SEEEEEECTTSCHHHHHHH-HHHHH--TCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHh--CCCEEEEe
Confidence 4688999999999997643 33333 44555544
No 183
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.82 E-value=0.77 Score=45.20 Aligned_cols=44 Identities=11% Similarity=-0.021 Sum_probs=26.1
Q ss_pred cCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCC
Q 002357 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 180 l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~ 224 (931)
..+.+++|+||+..+.+.... .++.+...+.....+|+-|+|++
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~-~~~~l~~~l~~~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQL-FIQAVRQTLSTPGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSH-HHHHHHHHHHCSSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHH-HHHHHHHHHhCCCcEEEEEeecC
Confidence 567899999998777433222 24444344444444555577774
No 184
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.79 E-value=0.56 Score=61.86 Aligned_cols=95 Identities=18% Similarity=0.120 Sum_probs=60.5
Q ss_pred HHHHhc------CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCC
Q 002357 85 VACLER------NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPN 158 (931)
Q Consensus 85 i~~l~~------g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~ 158 (931)
++.++. ++++++.+|+|+|||..+.-.+..+..+|.+++|+..--++.... .+.+.-++ .
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~~G~dl---------~-- 1480 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDI---------D-- 1480 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCT---------T--
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHHcCCCc---------h--
Confidence 666654 789999999999999998777777788899999998875544443 22332111 1
Q ss_pred CCeeEe---cHHHHHHHHhcCccccCcccEEEEeccccCC
Q 002357 159 ASCLVM---TTEILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 159 ~~IlV~---Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
++.|. +.|.+...+.+... -..+++|||||+.-+.
T Consensus 1481 -~l~v~~~~~~E~~l~~~~~lvr-~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1481 -NLLCSQPDTGEQALEICDALAR-SGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp -TCEEECCSSHHHHHHHHHHHHH-HTCCSEEEESCGGGCC
T ss_pred -hceeecCChHHHHHHHHHHHHh-cCCCCEEEEcChhHhc
Confidence 02222 22444444332110 1368999999997443
No 185
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=88.28 E-value=0.45 Score=53.77 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=23.8
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCc
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL 128 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~ 128 (931)
.+.+++.||+|+|||..+- +++..+ .+..++.+...
T Consensus 167 ~~~vLL~GppGtGKT~lA~-aia~~~-~~~~~~~v~~~ 202 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK-AVATEA-NNSTFFSISSS 202 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH-HHHHHC-CSSEEEEECCC
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHc-CCCCEEEEeHH
Confidence 3679999999999998763 333332 24455555543
No 186
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=87.66 E-value=0.81 Score=49.73 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=33.9
Q ss_pred HHHHHh-----cCCcEEEEcCCCCCcHHHHHHHHHHHHh------CCCEEEEEcCchhh
Q 002357 84 SVACLE-----RNESVLVSAHTSAGKTAVAEYAIAMAFR------DKQRVIYTSPLKAL 131 (931)
Q Consensus 84 ai~~l~-----~g~~vlv~apTGsGKTl~~~l~i~~~l~------~~~rvl~l~P~kaL 131 (931)
.++.+. .|.-+++.||+|+|||..+...+..... .+.+++|+.-...+
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~ 168 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTF 168 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCC
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCC
Confidence 355554 3567899999999999877655554333 46789999876543
No 187
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=87.65 E-value=1.2 Score=50.63 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.8
Q ss_pred CcEEEEcCCCCCcHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (931)
+.+++.+|+|+|||+.+-
T Consensus 50 ~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 569999999999999763
No 188
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.38 E-value=0.5 Score=48.26 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=36.7
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELH 140 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~ 140 (931)
..|..+++.||+|+|||..+...+......+.+++|+.-.. -..+..+.+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHH
Confidence 46788999999999999987655555556788899887543 3455555544
No 189
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=86.81 E-value=0.97 Score=51.95 Aligned_cols=50 Identities=8% Similarity=0.022 Sum_probs=35.3
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhC-CCEEEEEcCchhhHHHHHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSPLKALSNQKYREL 139 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~-~~rvl~l~P~kaL~~Q~~~~l 139 (931)
..|.-+++.|++|+|||..++-.+...... +.+|+|++---. ..|...++
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~ 290 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDL 290 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHH
Confidence 456789999999999998776555555554 788999876432 34555444
No 190
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=86.72 E-value=11 Score=40.36 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002357 78 DPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 78 ~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
+.-+.+.+.. .....++|.||.|+|||........ .+. ..++|+.
T Consensus 18 R~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~~-~~~--~~~~~~~ 62 (357)
T 2fna_A 18 REKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGIN-ELN--LPYIYLD 62 (357)
T ss_dssp CHHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHHH-HHT--CCEEEEE
T ss_pred hHHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHHH-hcC--CCEEEEE
Confidence 3444445544 4336899999999999987643333 222 2355553
No 191
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=86.68 E-value=1.2 Score=47.31 Aligned_cols=17 Identities=41% Similarity=0.448 Sum_probs=15.1
Q ss_pred cEEEEcCCCCCcHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~ 109 (931)
++++.||+|+|||..+.
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 69999999999998764
No 192
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=86.46 E-value=1.1 Score=47.53 Aligned_cols=88 Identities=11% Similarity=0.070 Sum_probs=55.5
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHhC--CCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEec---HH
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMT---TE 167 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~~--~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~T---pe 167 (931)
.+++.+|+|+|||..++-.+....+. +.+++|+..-.++.... ++.+.-+. .++++.. .|
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~r---a~~lGvd~------------d~llv~~~~~~E 94 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAY---LRSMGVDP------------ERVIHTPVQSLE 94 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHH---HHHTTCCG------------GGEEEEECSBHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHH---HHHhCCCH------------HHeEEEcCCCHH
Confidence 68899999999999887777777665 78999999887775432 33332111 1234433 34
Q ss_pred HH-HHHHhcCc-cccCcccEEEEeccccCC
Q 002357 168 IL-RGMLYRGS-EVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 168 ~L-~~~l~~~~-~~l~~l~~vViDEaH~l~ 195 (931)
.+ ...+..-. ..-..+++||+|=+..+.
T Consensus 95 ~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 95 QLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred HHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 43 32221110 112368999999999875
No 193
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=86.15 E-value=1.9 Score=48.91 Aligned_cols=53 Identities=17% Similarity=0.088 Sum_probs=42.6
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCC
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKD 145 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~ 145 (931)
.+....+.+-||||||++..-.+ . ..++.+||++|+...+.|.+.+++.++++
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~-~--~~~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIA-E--RHAGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHH-H--HSSSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCCeEEEeCCCchHHHHHHHHHH-H--HhCCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 45678999999999998643222 2 24678999999999999999999999873
No 194
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=85.89 E-value=2.2 Score=45.44 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
++-+++.+|+|+|||..+..........+.+|+++.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 445789999999999765432222223466665543
No 195
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=85.67 E-value=0.92 Score=51.80 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=22.1
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
...+++.+|+|+|||.++-. +... .+..++++.
T Consensus 238 ~~~vLL~GppGtGKT~lAra-ia~~--~~~~fv~vn 270 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARA-VANE--TGAFFFLIN 270 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHH-HHHH--CSSEEEEEE
T ss_pred CCcEEEECcCCCCHHHHHHH-HHHH--hCCCEEEEE
Confidence 46799999999999997643 3322 244555443
No 196
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.15 E-value=0.94 Score=55.80 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=17.7
Q ss_pred CCcEEEEcCCCCCcHHHHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEYAI 112 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i 112 (931)
..++++.||+|+|||.++....
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la 212 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLA 212 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHH
Confidence 4579999999999998765433
No 197
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=85.13 E-value=2.3 Score=45.72 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=23.0
Q ss_pred CHHHHHHHH-HHhcCCcEEEEcCCCCCcHHHHHH
Q 002357 78 DPFQRVSVA-CLERNESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 78 ~~~Q~~ai~-~l~~g~~vlv~apTGsGKTl~~~l 110 (931)
+.-+.+.+. .+..+..++|.||.|+|||.....
T Consensus 17 R~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~ 50 (350)
T 2qen_A 17 REEESRKLEESLENYPLTLLLGIRRVGKSSLLRA 50 (350)
T ss_dssp CHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHH
Confidence 344444443 344578899999999999987543
No 198
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=84.61 E-value=1.5 Score=57.20 Aligned_cols=90 Identities=18% Similarity=0.127 Sum_probs=62.5
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecH---H
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT---E 167 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp---e 167 (931)
|+.+.+.+|+|||||..++..+..+.+.|.+++|+.+--+|.... ++++.-+ ++ +++|.-| |
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~---~~~~Gv~---------~~---~l~~~~p~~~e 1495 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVD---------ID---NLLCSQPDTGE 1495 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCC---------GG---GCEEECCSSHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH---HHHcCCC---------HH---HeEEeCCCcHH
Confidence 577999999999999999999999999999999999998887775 3333211 11 1555555 3
Q ss_pred HHHHHHhcCccccCcccEEEEeccccCCC
Q 002357 168 ILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 168 ~L~~~l~~~~~~l~~l~~vViDEaH~l~~ 196 (931)
.........- .-..+++||+|.+-.+..
T Consensus 1496 ~~l~~~~~~~-~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1496 QALEICDALA-RSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp HHHHHHHHHH-HHTCCSEEEESCSTTCCC
T ss_pred HHHHHHHHHH-HcCCCCEEEEccHHhCCc
Confidence 3322221110 112578999999987764
No 199
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=84.59 E-value=1.7 Score=52.69 Aligned_cols=18 Identities=33% Similarity=0.375 Sum_probs=15.7
Q ss_pred cEEEEcCCCCCcHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l 110 (931)
++++.||||+|||.++-.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~a 540 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARA 540 (758)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 599999999999998743
No 200
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=84.09 E-value=0.89 Score=51.16 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=36.0
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSN 133 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~ 133 (931)
...+++|.|+||||||......+...+..+..++|+=|--++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 35789999999999999764455666778899999999988764
No 201
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=84.04 E-value=0.56 Score=50.07 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=23.5
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcC
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P 127 (931)
..|..+++.+|+|+|||..+...+.. .+.+++|+.-
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 34566899999999999876544333 3444554443
No 202
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=83.88 E-value=8.4 Score=39.99 Aligned_cols=136 Identities=17% Similarity=0.186 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhcCCccCCCccchhhhhhhcccCCchhHHHHHHhhCCCCCCCHHHHHHHhhccccccCCcccccccHHHH
Q 002357 738 ELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELA 817 (931)
Q Consensus 738 e~~~~~~vL~~lgyid~~~~vt~kGrvA~ei~s~~eLlltEll~~g~f~~l~p~eiaAllS~~v~~~~~~~~~~~~~~l~ 817 (931)
.+.+=+..|..||.+|+++.+|.-||..+++-. |.-+--.+|....|.-++ +++.+.|++-.++- ...+.+-+
T Consensus 19 ~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl-~P~lakmLl~a~~~~c~~--~~l~iaA~Ls~~~~----f~~p~~~~ 91 (270)
T 3i4u_A 19 TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPL-EPMLCKMLIMSVHLGCSE--EMLTIVSMLSVQNV----FYRPKDKQ 91 (270)
T ss_dssp HHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCS-CHHHHHHHHHHHHTTCHH--HHHHHHHHHTSSCC----BCCCGGGH
T ss_pred HHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCC-CHHHHHHHHHhhhcCCHH--HHHHHHHHHCCCcc----ccCCchhH
Confidence 466778899999999999999999999999986 555544555554565443 33333343333211 01111111
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccCCccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHH
Q 002357 818 KPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLR 897 (931)
Q Consensus 818 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ell~qi~ 897 (931)
+. +. +...++.....|+ ..+..+..+|.+...=.+-|..--+. .|.+++..++-+|+.
T Consensus 92 ~~-------a~-----~~~~~f~~~~sD~------ltlLn~~~~~~~~~~~~~wC~~~fL~----~~~l~~~~~ir~QL~ 149 (270)
T 3i4u_A 92 AL-------AD-----QKKAKFHQTEGDH------LTLLAVYNSWKNNKFSNPWCYENFIQ----ARSLRRAQDIRKQML 149 (270)
T ss_dssp HH-------HH-----HHHHTTCBTTBHH------HHHHHHHHHHHHTTTCHHHHHHTTBC----HHHHHHHHHHHHHHH
T ss_pred HH-------HH-----HHHHHccCCCChH------HHHHHHHHHHHHcCchhhHHHHhcCC----HHHHHHHHHHHHHHH
Confidence 10 10 1111222222222 24566677775432223444443333 367778888888887
Q ss_pred Hhhhh
Q 002357 898 AAAQA 902 (931)
Q Consensus 898 ~aa~~ 902 (931)
...+-
T Consensus 150 ~~l~~ 154 (270)
T 3i4u_A 150 GIMDR 154 (270)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 203
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=83.78 E-value=0.58 Score=54.36 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=17.4
Q ss_pred cCCcEEEEcCCCCCcHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~ 109 (931)
.|..+++.+|+|+|||..+-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 47789999999999998764
No 204
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=83.57 E-value=1.3 Score=57.66 Aligned_cols=94 Identities=19% Similarity=0.153 Sum_probs=58.2
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEIL 169 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L 169 (931)
.|..+++.+|+|+|||..+.-.+...+..+.+++|++-......-..+.+..-..++-+. .+ .|.+.+
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~------~p------~t~e~l 100 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCS------QP------DTGEQA 100 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEE------CC------SSHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeee------cc------CcHHHH
Confidence 368999999999999998877777777788999999876544333322210000112111 11 245555
Q ss_pred HHHHhcCccccCcccEEEEeccccCCC
Q 002357 170 RGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 170 ~~~l~~~~~~l~~l~~vViDEaH~l~~ 196 (931)
..++..-. ...+.++||||++..+..
T Consensus 101 ~~ll~~L~-~~~~~~LVVIDSLt~L~~ 126 (1706)
T 3cmw_A 101 LEICDALA-RSGAVDVIVVDSVAALTP 126 (1706)
T ss_dssp HHHHHHHH-HHTCCSEEEESCSTTCCC
T ss_pred HHHHHHHH-hccCCCEEEEcchhhhcc
Confidence 54443211 124689999999998753
No 205
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=83.36 E-value=2.7 Score=46.53 Aligned_cols=42 Identities=7% Similarity=0.090 Sum_probs=28.7
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHh------CCCEEEEEcCchhh
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFR------DKQRVIYTSPLKAL 131 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~------~~~rvl~l~P~kaL 131 (931)
.|.-+.+.+|+|+|||..+...+...+. .+.+++|+.-...+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~ 224 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF 224 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCcc
Confidence 4578899999999999876533333332 35678988765433
No 206
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=83.11 E-value=5.2 Score=42.20 Aligned_cols=94 Identities=13% Similarity=0.133 Sum_probs=46.5
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc--CchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTE 167 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~--P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe 167 (931)
.++.+.+.+++|+|||..+..........+.+++++- +.+..+..+...+.... ++.++.++.. ..|.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~-~l~~~~~~~~---------~~p~ 166 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKV-GVPVLEVMDG---------ESPE 166 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHH-TCCEEECCTT---------CCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccC-CeEEEEcCCC---------CCHH
Confidence 4556778899999999765433222223466666543 23333332223332221 2222322211 1343
Q ss_pred HH-HHHHhcCccccCcccEEEEeccccCC
Q 002357 168 IL-RGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 168 ~L-~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
.+ +..+... ...+.++||+|+.-.+.
T Consensus 167 ~l~~~~l~~~--~~~~~D~viiDtpp~~~ 193 (295)
T 1ls1_A 167 SIRRRVEEKA--RLEARDLILVDTAGRLQ 193 (295)
T ss_dssp HHHHHHHHHH--HHHTCCEEEEECCCCSS
T ss_pred HHHHHHHHHH--HhCCCCEEEEeCCCCcc
Confidence 33 2233221 12468999999995443
No 207
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=82.95 E-value=4.4 Score=49.02 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=17.7
Q ss_pred cCCcEEEEcCCCCCcHHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l 110 (931)
.+.++++.+|+|+|||.++..
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHH
Confidence 457899999999999988643
No 208
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.79 E-value=3 Score=46.66 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCCcHHHH
Q 002357 91 NESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~ 108 (931)
.+.+|+.+|+|+|||+.+
T Consensus 243 prGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSEEEECSCTTSSHHHHH
T ss_pred CCceEeeCCCCCcHHHHH
Confidence 478999999999999876
No 209
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=82.77 E-value=3 Score=44.69 Aligned_cols=94 Identities=14% Similarity=0.181 Sum_probs=46.9
Q ss_pred CCcEEEEcCCCCCcHHHHH-HHHHHHHhCCCEEEEE-cCc-hhhHHHHHHHHHHh--cCCeEEE-ecccccCCCCCeeEe
Q 002357 91 NESVLVSAHTSAGKTAVAE-YAIAMAFRDKQRVIYT-SPL-KALSNQKYRELHQE--FKDVGLM-TGDVTLSPNASCLVM 164 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~-l~i~~~l~~~~rvl~l-~P~-kaL~~Q~~~~l~~~--~~~vg~~-tGd~~~~~~~~IlV~ 164 (931)
++.+.+.+++|+|||..+. ++.... ..+.+|+++ +.+ +.-+.+....+... ..+++++ .+....++
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~-~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p------- 176 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYA-ELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADP------- 176 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHH-HTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCH-------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCH-------
Confidence 3457889999999997654 333333 456666655 333 22222222222210 2356666 43322111
Q ss_pred cHHHHHHHHhcCccccCcccEEEEeccccCC
Q 002357 165 TTEILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 165 Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
...+...+... ...++++||+|=+=.+.
T Consensus 177 -~~~~~~~l~~~--~~~~yD~VIIDTpg~l~ 204 (320)
T 1zu4_A 177 -ASVVFDAIKKA--KEQNYDLLLIDTAGRLQ 204 (320)
T ss_dssp -HHHHHHHHHHH--HHTTCSEEEEECCCCGG
T ss_pred -HHHHHHHHHHH--HhcCCCEEEEcCCCccc
Confidence 11222222211 13478999999776553
No 210
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=82.41 E-value=2 Score=50.49 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=22.7
Q ss_pred HHHhcCCcEEEEcCCCCCcHHHHHHHHHHHH
Q 002357 86 ACLERNESVLVSAHTSAGKTAVAEYAIAMAF 116 (931)
Q Consensus 86 ~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l 116 (931)
..+..|+.+++.+|+|+|||..+- ++...+
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtlar-~ia~~l 84 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLGQ-AMAELL 84 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHH-HHHHTS
T ss_pred ccccCCCEEEEEeCCCCCHHHHHH-HHhccC
Confidence 345788999999999999998763 334333
No 211
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=82.19 E-value=1.1 Score=55.25 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=21.6
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHH-hCCCEEEEE
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYT 125 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l-~~~~rvl~l 125 (931)
.++++.||||+|||.++-. +...+ ..+..++++
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~-la~~~~~~~~~~i~i 622 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKT-LAATLFDTEEAMIRI 622 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHH-HHHHHHSSGGGEEEE
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHhcCCCCcEEEE
Confidence 3799999999999998743 33333 333444443
No 212
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=79.46 E-value=2.6 Score=46.47 Aligned_cols=86 Identities=19% Similarity=0.280 Sum_probs=46.1
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC-CeEEEecccccCCCCCeeEecHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDVTLSPNASCLVMTTE 167 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~vg~~tGd~~~~~~~~IlV~Tpe 167 (931)
....++++.+++|+|||.+|- ++.........-++.+..-++..+... .++|| .-|..||.... .++
T Consensus 158 ~~~~~vli~Ge~GtGK~~lAr-~ih~~s~r~~~~fv~v~~~~~~~~~~~--~elfg~~~g~~tga~~~---------~~g 225 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVVAR-LIHKLSDRSKEPFVALNVASIPRDIFE--AELFGYEKGAFTGAVSS---------KEG 225 (387)
T ss_dssp TCCSCEEEECSTTSSHHHHHH-HHHHHSTTTTSCEEEEETTTSCHHHHH--HHHHCBCTTSSTTCCSC---------BCC
T ss_pred CCCCCeEEecCCCcCHHHHHH-HHHHhcCCCCCCeEEEecCCCCHHHHH--HHhcCCCCCCCCCcccc---------cCC
Confidence 445689999999999998763 233222222223333444445444322 24454 22334443221 112
Q ss_pred HHHHHHhcCccccCcccEEEEeccccCC
Q 002357 168 ILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 168 ~L~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
.+. ..+=+.+++||++.+.
T Consensus 226 ~~~---------~a~~gtlfldei~~l~ 244 (387)
T 1ny5_A 226 FFE---------LADGGTLFLDEIGELS 244 (387)
T ss_dssp HHH---------HTTTSEEEEESGGGCC
T ss_pred cee---------eCCCcEEEEcChhhCC
Confidence 111 1233789999999996
No 213
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=78.94 E-value=1.7 Score=49.84 Aligned_cols=48 Identities=23% Similarity=0.216 Sum_probs=29.8
Q ss_pred CCHHHHHHHH-HHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE
Q 002357 77 LDPFQRVSVA-CLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (931)
Q Consensus 77 l~~~Q~~ai~-~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l 125 (931)
+++.+..-+. .+..|.++++++|||||||... .++...+....+++.+
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL-~aL~~~i~~~~giiti 293 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL-NAIMMFIPPDAKVVSI 293 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH-HHHGGGSCTTCCEEEE
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhCCCCCCEEEE
Confidence 3344444443 3478899999999999999863 3444444444444444
No 214
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=78.73 E-value=1.4 Score=44.84 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=35.7
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHH-HHhCCCEEEEEcCchhhHHHHHHHHHHh
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAM-AFRDKQRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~-~l~~~~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
..|.-+++.|++|+|||..+.-.+.. +...+..++|++-.. -..+..+.+...
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~-~~~~~~~~~~~~ 81 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE-RARDLRREMASF 81 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS-CHHHHHHHHHTT
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC-CHHHHHHHHHHc
Confidence 34678999999999999876554444 345577888887542 345555555443
No 215
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=78.63 E-value=1.7 Score=47.95 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=34.5
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhh
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKAL 131 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL 131 (931)
.+.+++|.+|||+|||...-..+......+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCH
Confidence 567899999999999988766666666778899999887663
No 216
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=78.19 E-value=2.6 Score=55.73 Aligned_cols=91 Identities=16% Similarity=0.106 Sum_probs=58.3
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC---CeEEEecccccCCCCCeeEec
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK---DVGLMTGDVTLSPNASCLVMT 165 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~---~vg~~tGd~~~~~~~~IlV~T 165 (931)
..|+++++.+|+|+|||..+...+..+.+.|.+++|++-. ++.++.+ ...... +.-+. .+ + +
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~e-e~~~~L~--a~~~G~dl~~l~~~------~p--d----~ 1143 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE-HALDPIY--ARKLGVDIDNLLCS------QP--D----T 1143 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT-SCCCHHH--HHHTTCCTTTCEEE------CC--S----S
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcc-ccHHHHH--HHHcCCChhHheee------cC--c----c
Confidence 3678999999999999999988888888899999998754 5555655 222211 11111 11 1 2
Q ss_pred HHHHHHHHhcCccccCcccEEEEeccccCC
Q 002357 166 TEILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
.+........- ......++||+||+-++.
T Consensus 1144 ~e~~~~i~~~l-~~~~~~dlvVIDsl~~L~ 1172 (2050)
T 3cmu_A 1144 GEQALEICDAL-ARSGAVDVIVVDSVAALT 1172 (2050)
T ss_dssp HHHHHHHHHHH-HHHTCCSEEEESCGGGCC
T ss_pred hHHHHHHHHHH-HHhCCCCEEEECCccccc
Confidence 23332222111 113468999999999883
No 217
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=78.16 E-value=3.8 Score=44.44 Aligned_cols=40 Identities=20% Similarity=0.177 Sum_probs=27.0
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHh---C---CCEEEEEcCch
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFR---D---KQRVIYTSPLK 129 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~---~---~~rvl~l~P~k 129 (931)
.|.-+.+.+|+|+|||..+...+..... . +.+++|+.-..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 4567899999999999876554443321 1 36878886543
No 218
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=76.66 E-value=2.6 Score=46.94 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=29.1
Q ss_pred CHHHHHHHHHH--hcCCcEEEEcCCCCCcHHHHHHHHHHHHhC-CCEEEEE
Q 002357 78 DPFQRVSVACL--ERNESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYT 125 (931)
Q Consensus 78 ~~~Q~~ai~~l--~~g~~vlv~apTGsGKTl~~~l~i~~~l~~-~~rvl~l 125 (931)
.+-+..++..+ ..|..++|.+|||||||... .+++..+.. .++++++
T Consensus 152 ~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL-~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 152 TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQELNSSERNILTV 201 (418)
T ss_dssp CHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHHCCTTSCEEEE
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHhhcCCCCCEEEEe
Confidence 44556666554 34567899999999999863 344444433 3444443
No 219
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=76.62 E-value=44 Score=35.58 Aligned_cols=125 Identities=11% Similarity=0.079 Sum_probs=61.2
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEE-EEcCch-hhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVI-YTSPLK-ALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTE 167 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl-~l~P~k-aL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe 167 (931)
.|.-+.+.+|+|+|||...-.........+++++ .-.++. .-+.++.+.+.... .+.++.......+ ..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~-gv~~v~q~~~~~p--------~~ 198 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRI-GVKVIKHSYGADP--------AA 198 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHT-TCEEECCCTTCCH--------HH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHc-CceEEeccccCCH--------HH
Confidence 4567889999999999864332222223444544 444543 22333334443332 2223332221111 11
Q ss_pred HHHHHHhcCccccCcccEEEEeccccCCCC-CchHHHHHHHHhcCCCceEEEeccCCCC
Q 002357 168 ILRGMLYRGSEVLKEVAWVIFDEIHYMKDR-ERGVVWEESIIFLPPAIKMVFLSATMSN 225 (931)
Q Consensus 168 ~L~~~l~~~~~~l~~l~~vViDEaH~l~~~-~~g~~~~~ii~~l~~~~q~v~lSAT~~n 225 (931)
.....+.... ....+++++|.+-..... ..-..+..+...+.++..++.+.||...
T Consensus 199 ~v~e~l~~~~--~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~ 255 (328)
T 3e70_C 199 VAYDAIQHAK--ARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN 255 (328)
T ss_dssp HHHHHHHHHH--HHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT
T ss_pred HHHHHHHHHH--hccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH
Confidence 1122111111 124678899998765422 2223333344445566778888888753
No 220
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=76.53 E-value=4.9 Score=48.57 Aligned_cols=82 Identities=11% Similarity=0.030 Sum_probs=63.6
Q ss_pred CCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHH
Q 002357 328 KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK 407 (931)
Q Consensus 328 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R 407 (931)
.+.+++|.++++.-+...+..+.+..-. +.-.++.+||++...+|
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~-----------------------------------~gi~v~~l~G~~~~~~r 460 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSK-----------------------------------FNIHVALLIGATTPSEK 460 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTC-----------------------------------SSCCEEECCSSSCHHHH
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhh-----------------------------------cCceEEEEeCCCCHHHH
Confidence 4578999999999998888777542100 01127899999999999
Q ss_pred HHHHHHHhcCCceEEEecch-hhcccCCCCcEEEEecc
Q 002357 408 ELVELLFQEGLVKALFATET-FAMGLNMPAKTVVFTAV 444 (931)
Q Consensus 408 ~~v~~~F~~g~i~vLvaT~~-la~GIdip~~~vVI~~~ 444 (931)
..+...+.+|..+|+|+|.. +...+++..+.+||...
T Consensus 461 ~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDE 498 (780)
T 1gm5_A 461 EKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDE 498 (780)
T ss_dssp HHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEES
T ss_pred HHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEecc
Confidence 99999999999999999974 44578888888777543
No 221
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=76.43 E-value=2.9 Score=40.46 Aligned_cols=120 Identities=11% Similarity=-0.003 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHH--hcCCcEEEEcCCCCCcHHHHHHHHHHH-HhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccc
Q 002357 77 LDPFQRVSVACL--ERNESVLVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDV 153 (931)
Q Consensus 77 l~~~Q~~ai~~l--~~g~~vlv~apTGsGKTl~~~l~i~~~-l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~ 153 (931)
-++-|..++..+ ....-.+|.++-|++||....-.++.. -..|++|.+++|+..-.....+.. ++
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~~-------~l----- 102 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQDE-------RL----- 102 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCTT-------TC-----
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhhc-------Cc-----
Confidence 346788999887 444567889999999998744333333 257899999999965443321111 11
Q ss_pred ccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHh-cCCCceEEEeccC
Q 002357 154 TLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF-LPPAIKMVFLSAT 222 (931)
Q Consensus 154 ~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~-l~~~~q~v~lSAT 222 (931)
...++ |. ..+......+..=+++|+|||-.|+-. ....++.. ...+.|+|++--+
T Consensus 103 ----~~~t~--t~----~~ll~~~~~~tp~s~lIVD~AekLS~k----E~~~Lld~A~~~naqvvll~~~ 158 (189)
T 2l8b_A 103 ----SGELI--TG----RRQLLEGMAFTPGSTVIVDQGEKLSLK----ETLTLLDGAARHNVQVLITDSG 158 (189)
T ss_dssp ----SSCSS--ST----TTTTTTSCCCCCCCEEEEEESSSHHHH----HHHHHHHHHHHTTCCEEEEESS
T ss_pred ----Cccee--eh----hhhhcCCCCCCCCCEEEEechhhcCHH----HHHHHHHHHHhcCCEEEEeCCc
Confidence 11111 11 111112222344569999999988622 22222222 2346888887554
No 222
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=76.28 E-value=4 Score=37.76 Aligned_cols=65 Identities=14% Similarity=0.205 Sum_probs=52.6
Q ss_pred CCccHHHHHHHh-hCCCCHHHHHhhcCC-CcchHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHH
Q 002357 851 VRPFLMDVIYCW-SKGATFAEVIQMTDI-FEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAAS 916 (931)
Q Consensus 851 ~~~~l~~~v~~W-a~G~~f~~i~~~t~~-~EG~ivR~~rRl~ell~qi~~aa~~iG~~~L~~k~~~a~ 916 (931)
|++.+++-+..+ +.|.|+.+||...+| ..-+|=||+.+=.|+..++..| +..+...+.+.+.+..
T Consensus 13 ~t~e~~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~~~ef~e~~~~A-r~~~~~~~~~~~~~ia 79 (140)
T 4dyq_A 13 YMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKA-TEARADSIFEEIFEIA 79 (140)
T ss_dssp CCTTHHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 788999988888 999999999999999 8999999999999988888876 3334555555554433
No 223
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=74.33 E-value=2.1 Score=44.40 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=18.3
Q ss_pred HhcCCcEEEEcCCCCCcHHHH
Q 002357 88 LERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~ 108 (931)
+..|+.+++.+|||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 567888999999999999864
No 224
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=73.91 E-value=19 Score=39.99 Aligned_cols=119 Identities=14% Similarity=0.128 Sum_probs=58.2
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc--CchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~--P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (931)
+..+.+.+++|+|||..+..........+.+|+++. +.+..+.++...+.... ++.++..+.. ..|..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~-gv~v~~~~~~---------~~p~~ 167 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKV-GVPVLEVMDG---------ESPES 167 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHH-TCCEEECCTT---------CCHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccC-CccEEecCCC---------CCHHH
Confidence 445778899999999865433333334566666654 34444443333333322 2333332211 13433
Q ss_pred H-HHHHhcCccccCcccEEEEeccccCCCCCchHHHHHH---HHhcCCCceEEEeccCC
Q 002357 169 L-RGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES---IIFLPPAIKMVFLSATM 223 (931)
Q Consensus 169 L-~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~i---i~~l~~~~q~v~lSAT~ 223 (931)
+ ...+.... ..++++||+|=+=.+... .....++ ...+.+..-++.+.|+.
T Consensus 168 i~~~~l~~~~--~~~~DvVIIDTaG~l~~d--~~l~~el~~i~~~~~pd~vlLVvDa~t 222 (425)
T 2ffh_A 168 IRRRVEEKAR--LEARDLILVDTAGRLQID--EPLMGELARLKEVLGPDEVLLVLDAMT 222 (425)
T ss_dssp HHHHHHHHHH--HTTCSEEEEECCCCSSCC--HHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHHHHHH--HCCCCEEEEcCCCccccc--HHHHHHHHHhhhccCCceEEEEEeccc
Confidence 3 33333211 246899999977554321 2223322 22233343355566654
No 225
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=72.26 E-value=3.8 Score=44.84 Aligned_cols=85 Identities=19% Similarity=0.238 Sum_probs=45.4
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC-CeEEEecccccCCCCCeeEecHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDVTLSPNASCLVMTTE 167 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~vg~~tGd~~~~~~~~IlV~Tpe 167 (931)
.....+++.+++|+||++++-..- ....+... ++.+..-++..+.. -..+|| .-|-+||..... ++
T Consensus 150 ~~~~~vli~GesGtGKe~lAr~ih-~~s~r~~~-fv~vnc~~~~~~~~--~~~lfg~~~g~~tga~~~~---------~g 216 (368)
T 3dzd_A 150 KSKAPVLITGESGTGKEIVARLIH-RYSGRKGA-FVDLNCASIPQELA--ESELFGHEKGAFTGALTRK---------KG 216 (368)
T ss_dssp TSCSCEEEECCTTSSHHHHHHHHH-HHHCCCSC-EEEEESSSSCTTTH--HHHHHEECSCSSSSCCCCE---------EC
T ss_pred ccchhheEEeCCCchHHHHHHHHH-HhccccCC-cEEEEcccCChHHH--HHHhcCccccccCCccccc---------CC
Confidence 455689999999999998875432 22222222 44444444433221 123444 334444432211 11
Q ss_pred HHHHHHhcCccccCcccEEEEeccccCC
Q 002357 168 ILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 168 ~L~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
.+. ..+=+.+++||+|.+.
T Consensus 217 ~~~---------~a~~gtlfldei~~l~ 235 (368)
T 3dzd_A 217 KLE---------LADQGTLFLDEVGELD 235 (368)
T ss_dssp HHH---------HTTTSEEEEETGGGSC
T ss_pred hHh---------hcCCCeEEecChhhCC
Confidence 111 1233689999999996
No 226
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=72.12 E-value=22 Score=40.12 Aligned_cols=38 Identities=13% Similarity=0.075 Sum_probs=24.1
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE-cCc
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT-SPL 128 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l-~P~ 128 (931)
|.-+.+.+++|+|||...-.........++++++. ..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 44578999999999986433222222456677765 444
No 227
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=72.10 E-value=3.5 Score=41.52 Aligned_cols=112 Identities=17% Similarity=0.173 Sum_probs=55.8
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHhCCCEEE-EEcCchhhHHHHHHHHHHhcCC--eEEEecccccCCCCCeeEecHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVI-YTSPLKALSNQKYRELHQEFKD--VGLMTGDVTLSPNASCLVMTTEIL 169 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl-~l~P~kaL~~Q~~~~l~~~~~~--vg~~tGd~~~~~~~~IlV~Tpe~L 169 (931)
++++.++.|+|||..+.-........|.+|+ +.+-...-+..+ ..+.. ... .+... .. +..+--+....+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~-al~~g-l~~~~~~~~~----~~-~~~~~e~~l~~~ 80 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETE-ALLNG-LPQQPLLRTE----YR-GMTLEEMDLDAL 80 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHH-HHHTT-SCBCCCEEEE----ET-TEEEEECCHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHH-HHhcC-ccccCcceee----cC-CcccccccHHHH
Confidence 6899999999999987655555556676664 333222111111 01111 111 11110 00 011111233322
Q ss_pred HHHHhcCccccCcccEEEEeccccCC--CCCchHHHHHHHHhcCCCceEEEec
Q 002357 170 RGMLYRGSEVLKEVAWVIFDEIHYMK--DRERGVVWEESIIFLPPAIKMVFLS 220 (931)
Q Consensus 170 ~~~l~~~~~~l~~l~~vViDEaH~l~--~~~~g~~~~~ii~~l~~~~q~v~lS 220 (931)
+. ...+++|+||.=+.. .......|..+...++..+-++..+
T Consensus 81 ---L~------~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~ 124 (228)
T 2r8r_A 81 ---LK------AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTV 124 (228)
T ss_dssp ---HH------HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEE
T ss_pred ---Hh------cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEc
Confidence 21 246899999965542 2223345666666777776666443
No 228
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=71.97 E-value=3 Score=42.31 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=27.9
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHHH-hCCCEEEEEcCc
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPL 128 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~l-~~~~rvl~l~P~ 128 (931)
+..|+-+.+.+|+|||||..+-..+...+ ..+..++|+.-.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 45788999999999999987644332233 455566665543
No 229
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=70.62 E-value=3.8 Score=43.09 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=28.1
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHHH-hCCCEEEEEcC
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSP 127 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~l-~~~~rvl~l~P 127 (931)
+..|+-+++.||+|+|||..+...+.... ..|.+++|+..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 36788899999999999987644333333 33657877754
No 230
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=70.54 E-value=2.5 Score=46.10 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=18.7
Q ss_pred HhcCCcEEEEcCCCCCcHHHH
Q 002357 88 LERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~ 108 (931)
+..|+.+++++|||||||...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 478999999999999999863
No 231
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=70.14 E-value=11 Score=41.43 Aligned_cols=81 Identities=22% Similarity=0.095 Sum_probs=61.3
Q ss_pred cCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHH
Q 002357 327 RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVI 406 (931)
Q Consensus 327 ~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~ 406 (931)
..+.++||.++++.-+...+..+...+.. .-.++.+||+.+..+
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~------------------------------------~~~v~~~~g~~~~~~ 105 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADE------------------------------------KVKIFGFYSSMKKEE 105 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCS------------------------------------SCCEEECCTTSCHHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccC------------------------------------CceEEEEECCCChhh
Confidence 35678999999999999999888662210 012788999999999
Q ss_pred HHHHHHHHhcCCceEEEecchhh----cccCCCCcEEEEec
Q 002357 407 KELVELLFQEGLVKALFATETFA----MGLNMPAKTVVFTA 443 (931)
Q Consensus 407 R~~v~~~F~~g~i~vLvaT~~la----~GIdip~~~vVI~~ 443 (931)
|......+.+|..+|+|+|.-.- .-++...+.+||..
T Consensus 106 ~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViD 146 (414)
T 3oiy_A 106 KEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVD 146 (414)
T ss_dssp HHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEES
T ss_pred HHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEe
Confidence 98888999999999999998432 12556677777654
No 232
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=69.29 E-value=4.9 Score=40.01 Aligned_cols=32 Identities=25% Similarity=0.196 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHH
Q 002357 78 DPFQRVSVACLERNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 78 ~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~ 109 (931)
+.-|..++..+..|+-+.+.+|.|||||...-
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHHH
Confidence 33477788889999999999999999998653
No 233
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=68.91 E-value=3.5 Score=45.19 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=24.5
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHHHh-C-CCEEEEE
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFR-D-KQRVIYT 125 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~l~-~-~~rvl~l 125 (931)
+..|..+++.+|||||||...- .+...+. . .++++++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~-~l~~~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIA-SMIDYINQTKSYHIITI 171 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHH-HHHHHHHHHSCCEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHH-HHHhhcCcCCCcEEEEe
Confidence 4567889999999999998643 2333332 2 4566554
No 234
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=68.75 E-value=3.8 Score=49.43 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCCcHHHH
Q 002357 91 NESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~ 108 (931)
.+.+|+.+|+|+|||+.+
T Consensus 511 ~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CSCCEEESSTTSSHHHHH
T ss_pred CceEEEecCCCCCchHHH
Confidence 357999999999999865
No 235
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=68.26 E-value=8.5 Score=42.02 Aligned_cols=93 Identities=13% Similarity=0.106 Sum_probs=48.6
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc--------------CchhhHHHHHH----------HHHHhc----CCe
Q 002357 95 LVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS--------------PLKALSNQKYR----------ELHQEF----KDV 146 (931)
Q Consensus 95 lv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~--------------P~kaL~~Q~~~----------~l~~~~----~~v 146 (931)
+.++.-|.|||.++.-........|.+|+++= |...|.+-... .+.... .++
T Consensus 148 v~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~l~~~i~~~~~~l 227 (373)
T 3fkq_A 148 FTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLESCIKQSQEGV 227 (373)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCTTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHHHHHTCEECTTSC
T ss_pred EECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHcCCCCCCCHHHHHhhhhcccccccccHHHHhhcCCCCE
Confidence 34568889999877543333334588888875 44444443322 233322 134
Q ss_pred EEEecccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEecc
Q 002357 147 GLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEI 191 (931)
Q Consensus 147 g~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEa 191 (931)
.++.++....... -.+++.+..++..-. ....+++||+|=-
T Consensus 228 ~~l~~~~~~~~~~---~~~~~~~~~ll~~l~-~~~~yD~VIID~p 268 (373)
T 3fkq_A 228 SYFSSTKVALDIL---EISYADIDTLIGNIQ-GMDNYDEIIVDLP 268 (373)
T ss_dssp EECCCCSSGGGGG---GCCHHHHHHHHHHHH-HTSCCSEEEEECC
T ss_pred EEecCCCChHhHH---hCCHHHHHHHHHHHH-hcCCCCEEEEeCC
Confidence 4444433221111 126666665554322 2357899999944
No 236
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=68.26 E-value=2.3 Score=41.87 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=18.2
Q ss_pred hcCCcEEEEcCCCCCcHHHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l 110 (931)
..+..+++.+++|||||.++-.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHH
Confidence 4678899999999999998643
No 237
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=68.19 E-value=4.6 Score=39.06 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=24.2
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l 125 (931)
.|..+++.++.|||||.++-......-..+.++.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 456789999999999998654333322345556555
No 238
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=68.16 E-value=13 Score=36.05 Aligned_cols=81 Identities=19% Similarity=0.076 Sum_probs=49.9
Q ss_pred CCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccC-----------CCCCeeEecHHHH
Q 002357 101 SAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLS-----------PNASCLVMTTEIL 169 (931)
Q Consensus 101 GsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~-----------~~~~IlV~Tpe~L 169 (931)
.+.|.. +++-++.....+.++||.++++.-+...++.|....-.+..++|+.+.. ....|+|+|.
T Consensus 29 ~~~K~~-~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~--- 104 (185)
T 2jgn_A 29 ESDKRS-FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA--- 104 (185)
T ss_dssp GGGHHH-HHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC---
T ss_pred cHHHHH-HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC---
Confidence 345643 3344444444578999999999999999999988766889999987642 2567888883
Q ss_pred HHHHhcCccccCcccEEEE
Q 002357 170 RGMLYRGSEVLKEVAWVIF 188 (931)
Q Consensus 170 ~~~l~~~~~~l~~l~~vVi 188 (931)
.+.+| ..+.++++||.
T Consensus 105 --~~~~G-ldi~~~~~VI~ 120 (185)
T 2jgn_A 105 --VAARG-LDISNVKHVIN 120 (185)
T ss_dssp ---------CCCSBSEEEE
T ss_pred --hhhcC-CCcccCCEEEE
Confidence 22233 23566777775
No 239
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=67.64 E-value=7.6 Score=49.47 Aligned_cols=69 Identities=16% Similarity=0.104 Sum_probs=46.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhC---CCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHH
Q 002357 94 VLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILR 170 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~---~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~ 170 (931)
-+|.|..|||||.+...-|...+.. +.++++++|... .-+..+++....+.- ....+.|+|...|.
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~-TFt~~~rl~~~l~~~----------~~~~~~V~TFhsla 72 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM-TFLMEYELAKTPDMG----------GMIRAQVFSFSRLA 72 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG-HHHHHHHHTCCSSCS----------EESSEEEECHHHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc-cHHHHHHHHHhhhhc----------ceeeeEEecHHHHH
Confidence 3788999999999887777666643 478999999864 444445554443311 11357788888776
Q ss_pred HHH
Q 002357 171 GML 173 (931)
Q Consensus 171 ~~l 173 (931)
..+
T Consensus 73 ~~i 75 (1166)
T 3u4q_B 73 WRV 75 (1166)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 240
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=67.31 E-value=4.2 Score=44.17 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=24.0
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHh--CCCEEEEEc
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFR--DKQRVIYTS 126 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~--~~~rvl~l~ 126 (931)
..+..+++.+|||||||... .+++..+. .+.+++.+-
T Consensus 121 ~~~g~i~I~GptGSGKTTlL-~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTL-AAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHH-HHHHHHHHHHCCCEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHHhcccCCCCcEEEEcc
Confidence 55668999999999999864 33434433 245554443
No 241
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=66.93 E-value=3.2 Score=40.08 Aligned_cols=20 Identities=5% Similarity=0.275 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCCCcHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~ 109 (931)
.|+-+++++|+|+|||...-
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56778999999999998753
No 242
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=66.62 E-value=32 Score=41.47 Aligned_cols=61 Identities=21% Similarity=0.247 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhcCCccCCCccchhhhhhhcccCCchhHHHHHHhhCCCCCCCH-HHHHHHhh
Q 002357 737 DELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH-HQVAALAS 798 (931)
Q Consensus 737 ~e~~~~~~vL~~lgyid~~~~vt~kGrvA~ei~s~~eLlltEll~~g~f~~l~p-~eiaAllS 798 (931)
..+.+-++.|..+|.||+++.+|.-||.++++.. +.-+--.++....|.-+++ -.|||+||
T Consensus 489 ~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl-~p~~~~~l~~~~~~~c~~~~l~i~a~ls 550 (773)
T 2xau_A 489 ETMMRALEELNYLACLDDEGNLTPLGRLASQFPL-DPMLAVMLIGSFEFQCSQEILTIVAMLS 550 (773)
T ss_dssp HHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSS-CHHHHHHHHHGGGGTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCcccCCCcChhhhhhccccC-CHHHHHHHHhhcccCchhHHHHHHHhcc
Confidence 4577888999999999999999999999999986 5555555555555554433 34455555
No 243
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=66.34 E-value=2.7 Score=45.10 Aligned_cols=18 Identities=17% Similarity=0.386 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCCcHHHH
Q 002357 91 NESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~ 108 (931)
+..++++||||+|||.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346899999999999864
No 244
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=66.10 E-value=23 Score=33.19 Aligned_cols=66 Identities=21% Similarity=0.161 Sum_probs=51.0
Q ss_pred hCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccE
Q 002357 117 RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAW 185 (931)
Q Consensus 117 ~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~ 185 (931)
..+.++||.++++.-+...++.|....-.+..++|+.+. +...+|+|+|. .+.+|- .+.++++
T Consensus 33 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~Gl-d~~~~~~ 106 (163)
T 2hjv_A 33 ENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAARGI-DIENISL 106 (163)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTTTC-CCSCCSE
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcCC-chhcCCE
Confidence 356789999999999999999999887789999998752 34678999983 344443 4667888
Q ss_pred EEE
Q 002357 186 VIF 188 (931)
Q Consensus 186 vVi 188 (931)
||.
T Consensus 107 Vi~ 109 (163)
T 2hjv_A 107 VIN 109 (163)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 245
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=65.44 E-value=23 Score=33.15 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=50.9
Q ss_pred CCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEE
Q 002357 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (931)
Q Consensus 118 ~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (931)
.+.++||.++++.-+...+..+....-.+..++|+.+. +....|+|+|. .+.+|- .+.++++|
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G~-d~~~~~~V 102 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLARGI-DVQQVSLV 102 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGTTTC-CCCSCSEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhhcCC-CcccCCEE
Confidence 56789999999999999999998876688999998752 34678999984 344443 46678888
Q ss_pred EEe
Q 002357 187 IFD 189 (931)
Q Consensus 187 ViD 189 (931)
|.-
T Consensus 103 i~~ 105 (165)
T 1fuk_A 103 INY 105 (165)
T ss_dssp EES
T ss_pred EEe
Confidence 763
No 246
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=65.39 E-value=3.5 Score=40.92 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=17.3
Q ss_pred hcCCcEEEEcCCCCCcHHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~ 109 (931)
..|.-+++.||+|+|||.++-
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHH
Confidence 356778999999999998753
No 247
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=65.31 E-value=2.8 Score=40.43 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCCcHHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l 110 (931)
+..+++.+++|||||.++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56799999999999998643
No 248
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=65.02 E-value=2.9 Score=40.04 Aligned_cols=19 Identities=21% Similarity=0.504 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCCcHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~ 109 (931)
+..++++|++|||||.++-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999999863
No 249
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.41 E-value=13 Score=40.96 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCCcHHHH
Q 002357 91 NESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~ 108 (931)
.+.+|+.||+|+|||+.+
T Consensus 182 prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCEEEESCSSSSHHHHH
T ss_pred CCceEEeCCCCCCHHHHH
Confidence 478999999999999976
No 250
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=64.06 E-value=2.7 Score=44.57 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCCcHHHH
Q 002357 92 ESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~ 108 (931)
.-++|+||||+|||..+
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 45788999999999864
No 251
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=64.04 E-value=3.7 Score=46.84 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCcEEEEcCCCCCcHHHH
Q 002357 82 RVSVACLERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 82 ~~ai~~l~~g~~vlv~apTGsGKTl~~ 108 (931)
..+..++..+.++++.||+|+|||..+
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 344555678899999999999999876
No 252
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.79 E-value=14 Score=41.17 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCCcHHHH
Q 002357 92 ESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~ 108 (931)
+.+|+.||+|+|||+.+
T Consensus 207 rGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CEEEEESCTTTTHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56999999999999976
No 253
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=63.64 E-value=5.4 Score=45.00 Aligned_cols=76 Identities=26% Similarity=0.201 Sum_probs=42.6
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRG 171 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~ 171 (931)
+++++.+|+|+|||..+. ++...+......+.+... .-.+. .++..+.+..
T Consensus 64 ~~iLl~GppGtGKT~la~-ala~~l~~~~~~~~~~~~------------------------~~~~~----~~~~~~~~~~ 114 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALAL-AIAQELGSKVPFCPMVGS------------------------EVYST----EIKKTEVLME 114 (456)
T ss_dssp CEEEEECCTTSSHHHHHH-HHHHHHCTTSCEEEEEGG------------------------GGCCS----SSCHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH-HHHHHhCCCceEEEEeHH------------------------HHHHH----hhhhhHHHHH
Confidence 589999999999998763 444444332333333221 11111 1234455554
Q ss_pred HHhcCc-cccCcccEEEEeccccCCC
Q 002357 172 MLYRGS-EVLKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 172 ~l~~~~-~~l~~l~~vViDEaH~l~~ 196 (931)
.+.... .......+|++||+|.+..
T Consensus 115 ~f~~a~~~~~~~~~il~iDEid~l~~ 140 (456)
T 2c9o_A 115 NFRRAIGLRIKETKEVYEGEVTELTP 140 (456)
T ss_dssp HHHHTEEEEEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHhhhhcCCcEEEEechhhccc
Confidence 443321 0133567999999998874
No 254
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=63.24 E-value=3.7 Score=40.46 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCCCcHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~ 108 (931)
.|.-+++.+|||+|||..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4567899999999999754
No 255
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=63.05 E-value=3.3 Score=44.57 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=24.9
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcC
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P 127 (931)
+..|+.+.+.+|||||||... -++...+......+.+-.
T Consensus 168 i~~g~~v~i~G~~GsGKTTll-~~l~g~~~~~~g~i~i~~ 206 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYI-KSIMEFIPKEERIISIED 206 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHH-HHGGGGSCTTSCEEEEES
T ss_pred ccCCCEEEEECCCCCCHHHHH-HHHhCCCcCCCcEEEECC
Confidence 468899999999999999853 223333333334444433
No 256
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=63.02 E-value=7.3 Score=37.30 Aligned_cols=34 Identities=29% Similarity=0.209 Sum_probs=21.7
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
-+.++++.|||||....-.+...-..+.++-++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 4678999999999875433332224565655544
No 257
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=62.69 E-value=3.1 Score=44.02 Aligned_cols=16 Identities=38% Similarity=0.617 Sum_probs=13.8
Q ss_pred cEEEEcCCCCCcHHHH
Q 002357 93 SVLVSAHTSAGKTAVA 108 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~ 108 (931)
-++|++|||+|||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4788999999999864
No 258
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=62.65 E-value=3.7 Score=39.86 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=24.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHH
Q 002357 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQK 135 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~ 135 (931)
++|.+++|||||..++-.. .. +.+++|+..-...-.++
T Consensus 2 ilV~Gg~~SGKS~~A~~la---~~-~~~~~yiaT~~~~d~e~ 39 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI---GD-APQVLYIATSQILDDEM 39 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH---CS-CSSEEEEECCCC-----
T ss_pred EEEECCCCCcHHHHHHHHH---hc-CCCeEEEecCCCCCHHH
Confidence 6899999999998665322 22 66789988866543333
No 259
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=62.61 E-value=4.1 Score=40.08 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCCcHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~ 109 (931)
.|+-+.+.||+|+|||...-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57789999999999998753
No 260
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=62.61 E-value=3.3 Score=44.40 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=20.5
Q ss_pred HHHHhcCCcEEEEcCCCCCcHHHHH
Q 002357 85 VACLERNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 85 i~~l~~g~~vlv~apTGsGKTl~~~ 109 (931)
...+..+.++++.||+|+|||..+.
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHHH
Confidence 3445678899999999999998764
No 261
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=62.57 E-value=6.6 Score=41.23 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCCcHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~ 109 (931)
+.++++.||+|+|||.++.
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999998764
No 262
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=62.57 E-value=6.7 Score=38.42 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHH
Q 002357 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l 110 (931)
.+..+...+ ....|..+.+.+|.|||||.++-.
T Consensus 12 ~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 12 VEKVDRQRL-LDQKGCVIWVTGLSGSGKSTLACA 44 (200)
T ss_dssp CCHHHHHHH-HTSCCEEEEEECSTTSSHHHHHHH
T ss_pred cCHHHHHHh-cCCCCeEEEEECCCCCCHHHHHHH
Confidence 444444332 225677889999999999987643
No 263
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=62.37 E-value=5.6 Score=43.23 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCCCcHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~ 109 (931)
.+.++++.+|+|+|||.++-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45789999999999999764
No 264
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.27 E-value=6.6 Score=43.78 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCCcHHHH
Q 002357 91 NESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~ 108 (931)
.+.+|+.||+|+|||+.+
T Consensus 215 prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeeEEECcCCCCHHHHH
Confidence 368999999999999975
No 265
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=61.97 E-value=6.8 Score=41.75 Aligned_cols=52 Identities=8% Similarity=0.095 Sum_probs=33.8
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHH-H-----------hCC----CEEEEEcCchhh-HHHHHHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMA-F-----------RDK----QRVIYTSPLKAL-SNQKYRELHQ 141 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~-l-----------~~~----~rvl~l~P~kaL-~~Q~~~~l~~ 141 (931)
.|.-+++.||+|+|||..+...+... + ..| .+++|++--..+ ..+..+.+..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~ 165 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEH 165 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999998775544442 2 123 689998876544 3444444433
No 266
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=61.81 E-value=7.4 Score=41.20 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=22.5
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l 125 (931)
.|+.+.+.+|+|+|||...-......-..++++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 456788999999999986433222222335555554
No 267
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=61.65 E-value=3.3 Score=39.17 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=15.8
Q ss_pred cEEEEcCCCCCcHHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~ 111 (931)
.+++.|++|||||.++...
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999986544
No 268
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=61.64 E-value=4.1 Score=40.19 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=18.0
Q ss_pred HhcCCcEEEEcCCCCCcHHHH
Q 002357 88 LERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~ 108 (931)
+..|.-+++++|+|||||.++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 456788999999999999875
No 269
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=61.37 E-value=3.8 Score=39.72 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCCCcHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~ 109 (931)
++..+++.+++|||||.++-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999999864
No 270
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=61.36 E-value=14 Score=35.23 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=50.3
Q ss_pred CCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEE
Q 002357 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (931)
Q Consensus 118 ~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (931)
.+.++||.++++.-+...++.+......+..++|+.+. +...+|+|+|. .+.+| ..+..+++|
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~G-id~~~~~~V 106 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCARG-IDVKQVTIV 106 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCCTT-TCCTTEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chhcC-CCcccCCEE
Confidence 46799999999999999999998877789999998752 34678999983 33333 346778888
Q ss_pred EE
Q 002357 187 IF 188 (931)
Q Consensus 187 Vi 188 (931)
|.
T Consensus 107 i~ 108 (175)
T 2rb4_A 107 VN 108 (175)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 271
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=61.32 E-value=22 Score=45.01 Aligned_cols=82 Identities=12% Similarity=0.030 Sum_probs=63.1
Q ss_pred CCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHH
Q 002357 328 KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK 407 (931)
Q Consensus 328 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R 407 (931)
.+.+++|.++++.-+.+.+..+.+..-. ....++.++|..+..++
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~-----------------------------------~~i~v~~l~~~~~~~~~ 695 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFAN-----------------------------------WPVRIEMISRFRSAKEQ 695 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTT-----------------------------------TTCCEEEESTTSCHHHH
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhc-----------------------------------CCCeEEEEeCCCCHHHH
Confidence 4568999999999888888777541100 01136888999999999
Q ss_pred HHHHHHHhcCCceEEEecc-hhhcccCCCCcEEEEecc
Q 002357 408 ELVELLFQEGLVKALFATE-TFAMGLNMPAKTVVFTAV 444 (931)
Q Consensus 408 ~~v~~~F~~g~i~vLvaT~-~la~GIdip~~~vVI~~~ 444 (931)
..+...+.+|..+|+|+|. .+...+++.+..+||...
T Consensus 696 ~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIiDE 733 (1151)
T 2eyq_A 696 TQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDE 733 (1151)
T ss_dssp HHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEES
T ss_pred HHHHHHHhcCCCCEEEECHHHHhCCccccccceEEEec
Confidence 9999999999999999995 556678888998877543
No 272
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=61.07 E-value=4.5 Score=39.69 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=17.9
Q ss_pred HhcCCcEEEEcCCCCCcHHHHH
Q 002357 88 LERNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~ 109 (931)
+..|.-+.+.||+|||||..+-
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHH
Confidence 3467889999999999998753
No 273
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=60.97 E-value=4.5 Score=39.66 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=17.3
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
..|+-+.+.||+|||||...
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHH
Confidence 46788899999999999875
No 274
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.96 E-value=7.2 Score=43.52 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCCcHHHH
Q 002357 91 NESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~ 108 (931)
.+.+|+.||+|+|||+.+
T Consensus 215 prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 378999999999999976
No 275
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=60.92 E-value=7.6 Score=38.66 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=27.3
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHh------CCCEEEEEcCch
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFR------DKQRVIYTSPLK 129 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~------~~~rvl~l~P~k 129 (931)
..|+-+.+.+|+|+|||..+...+..... .+..++|+....
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 45678999999999999875443322222 255677776654
No 276
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=60.78 E-value=28 Score=34.36 Aligned_cols=66 Identities=20% Similarity=0.208 Sum_probs=51.7
Q ss_pred hCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccE
Q 002357 117 RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAW 185 (931)
Q Consensus 117 ~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~ 185 (931)
..+.++||.+|++.-+...++.+....-.+..++|+.+. +...+|+|+|. .+.+| ..+.++++
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G-idi~~v~~ 102 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAARG-LDIPQVDL 102 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTTCS-SSCCCBSE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhhcC-CCCccCcE
Confidence 457899999999999999999998887789999998752 34678999993 44444 34677888
Q ss_pred EEE
Q 002357 186 VIF 188 (931)
Q Consensus 186 vVi 188 (931)
||.
T Consensus 103 Vi~ 105 (212)
T 3eaq_A 103 VVH 105 (212)
T ss_dssp EEE
T ss_pred EEE
Confidence 873
No 277
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=60.72 E-value=3.4 Score=42.51 Aligned_cols=16 Identities=38% Similarity=0.422 Sum_probs=14.0
Q ss_pred cEEEEcCCCCCcHHHH
Q 002357 93 SVLVSAHTSAGKTAVA 108 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~ 108 (931)
.+++++|||||||..+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999875
No 278
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=60.65 E-value=3.2 Score=40.24 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=18.2
Q ss_pred HhcCCcEEEEcCCCCCcHHHHH
Q 002357 88 LERNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~ 109 (931)
+..|..+++.+|.|||||..+-
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHH
Confidence 3567789999999999998753
No 279
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=60.08 E-value=5.2 Score=39.44 Aligned_cols=20 Identities=5% Similarity=0.363 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
..|+-++++||+|+|||...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHH
Confidence 36778999999999999864
No 280
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=59.71 E-value=4.4 Score=38.91 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=18.2
Q ss_pred hcCCcEEEEcCCCCCcHHHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l 110 (931)
..+..+++.+++|||||.++..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHH
Confidence 3567899999999999997643
No 281
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=59.42 E-value=8.6 Score=39.26 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCCcHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~ 109 (931)
...+++.+|+|+|||..+-
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4579999999999998764
No 282
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=58.88 E-value=4 Score=43.18 Aligned_cols=34 Identities=29% Similarity=0.327 Sum_probs=22.7
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
.++.+++.||+|+|||..+- +++..+ +...+.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~-ala~~~--~~~~i~v~ 81 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAK-AIANEC--QANFISIK 81 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHH-HHHHHT--TCEEEEEC
T ss_pred CCceEEEECCCCcCHHHHHH-HHHHHh--CCCEEEEE
Confidence 45789999999999999764 333332 34444443
No 283
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=58.83 E-value=4.5 Score=38.44 Aligned_cols=19 Identities=16% Similarity=0.448 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCCcHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~ 109 (931)
+..+++.+|.|||||.++-
T Consensus 4 ~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5679999999999999753
No 284
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=58.62 E-value=8 Score=40.92 Aligned_cols=39 Identities=10% Similarity=0.154 Sum_probs=23.8
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc-Cc
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS-PL 128 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~-P~ 128 (931)
.|+-+.+.+|+|+|||...-......-..++++.+.. ++
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~ 138 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 138 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 4556789999999999864332222223455665543 44
No 285
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=58.43 E-value=7.3 Score=40.19 Aligned_cols=52 Identities=12% Similarity=0.001 Sum_probs=36.2
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHh
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE 142 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~ 142 (931)
+|..+++.+.+|+|||+.+..-+...+.+|-+++|++=. +=..|..+.++.+
T Consensus 20 ~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp TCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECS-SCHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEe-CCHHHHHHHHHHc
Confidence 456788887888888865555566677889999998764 3344555555554
No 286
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=58.23 E-value=9 Score=36.82 Aligned_cols=34 Identities=12% Similarity=0.023 Sum_probs=22.3
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHh-CCCEEEEEcCc
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPL 128 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~-~~~rvl~l~P~ 128 (931)
.+++.|+.|||||.++.... ..+. .+..+.++ |+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~-~~l~~~g~~~~~~-~~ 37 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVK-EILDNQGINNKII-NY 37 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHHHTTTCCEEEE-EH
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHhcCceEEEE-EC
Confidence 47899999999999875433 3333 34445555 43
No 287
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=58.18 E-value=18 Score=45.55 Aligned_cols=82 Identities=22% Similarity=0.082 Sum_probs=62.5
Q ss_pred cCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHH
Q 002357 327 RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVI 406 (931)
Q Consensus 327 ~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~ 406 (931)
..+.++||.++++.-|.+++..+.+.+.. .-.++.+|||++..+
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~------------------------------------~i~v~~l~Gg~~~~e 162 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADE------------------------------------KVKIFGFYSSMKKEE 162 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCT------------------------------------TSCEEEECTTCCTTH
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCC------------------------------------CCeEEEEeCCCCHHH
Confidence 35578999999999999999999874411 012789999999988
Q ss_pred HHHHHHHHhcCCceEEEecchhh----cccCCCCcEEEEecc
Q 002357 407 KELVELLFQEGLVKALFATETFA----MGLNMPAKTVVFTAV 444 (931)
Q Consensus 407 R~~v~~~F~~g~i~vLvaT~~la----~GIdip~~~vVI~~~ 444 (931)
|......+.+|..+|+|+|.-.- .-++...+.+||...
T Consensus 163 r~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDE 204 (1104)
T 4ddu_A 163 KEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDD 204 (1104)
T ss_dssp HHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESC
T ss_pred HHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeC
Confidence 88889999999999999997322 115566777766543
No 288
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=58.10 E-value=9.1 Score=36.56 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=17.2
Q ss_pred cCCcEEEEcCCCCCcHHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l 110 (931)
+|..+++.++.|||||.++-.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~ 24 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMA 24 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 466788999999999987643
No 289
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=57.84 E-value=9 Score=37.84 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHH--hCCCEEEEEc
Q 002357 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF--RDKQRVIYTS 126 (931)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l--~~~~rvl~l~ 126 (931)
.++.++.. ..+..|..+++.+++|||||.++-.. ...+ ..|..++++.
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~~l-~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTLAVEL-EHQLVRDRRVHAYRLD 61 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHHHHHH-HHHHHHHHCCCEEEEC
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHHHHHH-HHHhccccCCcEEEEC
Confidence 34555554 34567788999999999999876432 2222 2344455554
No 290
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=57.68 E-value=25 Score=34.06 Aligned_cols=65 Identities=17% Similarity=0.075 Sum_probs=50.3
Q ss_pred CCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEE
Q 002357 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (931)
Q Consensus 118 ~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (931)
.+.++||.++++.-+...++.|....-.+..++|+.+. +....|+|+|. .+.+|- .+.++++|
T Consensus 53 ~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~Gl-di~~v~~V 126 (191)
T 2p6n_A 53 TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASKGL-DFPAIQHV 126 (191)
T ss_dssp SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHTTC-CCCCCSEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhcCC-CcccCCEE
Confidence 46689999999999999999998887788899998753 24678999993 333443 46778888
Q ss_pred EE
Q 002357 187 IF 188 (931)
Q Consensus 187 Vi 188 (931)
|.
T Consensus 127 I~ 128 (191)
T 2p6n_A 127 IN 128 (191)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 291
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=57.58 E-value=4.6 Score=38.94 Aligned_cols=20 Identities=25% Similarity=0.415 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCCcHHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l 110 (931)
+..+++.+++|||||.++-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~ 22 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQL 22 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 56789999999999997643
No 292
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=57.39 E-value=8.9 Score=37.60 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCCcHHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l 110 (931)
+.-+.+.+++|||||..+-.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~ 41 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQ 41 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45678999999999987643
No 293
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=57.33 E-value=31 Score=35.14 Aligned_cols=122 Identities=13% Similarity=0.058 Sum_probs=68.7
Q ss_pred HHHHHHHHHhhcCCccC----CC------ccchhhhhhhcccCCchhHHHHHHhhCCCCCCCHHHHHHHhhccccccCCc
Q 002357 738 ELKNRSRVLKKLGHIDA----DG------VVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSS 807 (931)
Q Consensus 738 e~~~~~~vL~~lgyid~----~~------~vt~kGrvA~ei~s~~eLlltEll~~g~f~~l~p~eiaAllS~~v~~~~~~ 807 (931)
..-.+++=|++.|||.. ++ .+|.||+-..+-.. -.+.+++ ++++.+ ..+
T Consensus 66 t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~~~~~---~~~~~~~-eq~s~E-----------------~~~ 124 (250)
T 1p4x_A 66 DLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAERV---TLFDQII-KQFNLA-----------------DQS 124 (250)
T ss_dssp GTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHHH---HHHHHHH-HHHHHH-----------------TTC
T ss_pred hHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHHHHH---HHHHHHH-HHHhcc-----------------ccc
Confidence 45578888999999942 22 48889987432110 0011111 222221 000
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccCCccHHHHHHHhhCC---CCHHHHHhhcCCCcchHHH
Q 002357 808 EQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKG---ATFAEVIQMTDIFEGSIIR 884 (931)
Q Consensus 808 ~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~Wa~G---~~f~~i~~~t~~~EG~ivR 884 (931)
-.+.++..+...+.....+......+...+|+... .+.-+.+-|.+| .+..+|.+...+..+++.|
T Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gLt~~-----------q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~ 193 (250)
T 1p4x_A 125 ESQMIPKDSKEFLNLMMYTMYFKNIIKKHLTLSFV-----------EFTILAIITSQNKNIVLLKDLIETIHHKYPQTVR 193 (250)
T ss_dssp CSSCSCCSHHHHHHHHHHHHHHHHHHHHHCSSCHH-----------HHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhhCCCCHH-----------HHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHH
Confidence 01122333444433334444445556667786432 222333445443 7999999999999999999
Q ss_pred HHHHHHH
Q 002357 885 SARRLDE 891 (931)
Q Consensus 885 ~~rRl~e 891 (931)
.+.||++
T Consensus 194 ~v~rLe~ 200 (250)
T 1p4x_A 194 ALNNLKK 200 (250)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999986
No 294
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=57.27 E-value=6.7 Score=43.82 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=24.1
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
..+++++++|+|||..+.-........|.+|+++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 36889999999999865443333334567777665
No 295
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=56.84 E-value=11 Score=36.51 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=20.1
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEE
Q 002357 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIY 124 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~ 124 (931)
+++.|+.|||||.++.......-..|..++.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~ 33 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 6789999999999875543332233555543
No 296
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=56.53 E-value=9.7 Score=39.13 Aligned_cols=36 Identities=11% Similarity=0.182 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
+..+++.|++|||||..+-......-..|..++++.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 446889999999999976443322222455555443
No 297
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=56.45 E-value=3.7 Score=39.57 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=17.5
Q ss_pred cCCcEEEEcCCCCCcHHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l 110 (931)
.|..+++.++.|||||.++-.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456789999999999998654
No 298
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=56.36 E-value=6.6 Score=31.33 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=20.1
Q ss_pred HHHhhcCCCcchHHHHHHHHHHHHH
Q 002357 870 EVIQMTDIFEGSIIRSARRLDEFLN 894 (931)
Q Consensus 870 ~i~~~t~~~EG~ivR~~rRl~ell~ 894 (931)
+++..-++.||||||.++.++....
T Consensus 42 ~~Lr~LGi~eGDIIrVmk~l~~k~~ 66 (72)
T 3idw_A 42 SMLRTLGLREGDIVRVMKHLDKKFG 66 (72)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCchhhHHHHHHHHHHHhC
Confidence 5566678889999999999987643
No 299
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=55.98 E-value=8.9 Score=40.42 Aligned_cols=93 Identities=11% Similarity=0.040 Sum_probs=47.1
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc--CchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~--P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (931)
+..+++.+++|+|||..+..........+.+++++. |.+..+.++.+.+.... ++.++.+... ..|..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~-~v~v~~~~~~---------~~p~~ 167 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQI-GVPVYGEPGE---------KDVVG 167 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHH-TCCEECCTTC---------CCHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccC-CeEEEecCCC---------CCHHH
Confidence 345778999999999765433333334566665543 23344443333333221 2223332110 23433
Q ss_pred H-HHHHhcCccccCcccEEEEeccccCC
Q 002357 169 L-RGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 169 L-~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
+ ...+.... ..++++||+|=+=.+.
T Consensus 168 ~~~~~l~~~~--~~~~D~ViIDTpg~~~ 193 (297)
T 1j8m_F 168 IAKRGVEKFL--SEKMEIIIVDTAGRHG 193 (297)
T ss_dssp HHHHHHHHHH--HTTCSEEEEECCCSCC
T ss_pred HHHHHHHHHH--hCCCCEEEEeCCCCcc
Confidence 3 23332211 1468999999876553
No 300
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=55.88 E-value=6.7 Score=39.18 Aligned_cols=21 Identities=10% Similarity=0.278 Sum_probs=17.2
Q ss_pred HhcCCcEEEEcCCCCCcHHHH
Q 002357 88 LERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~ 108 (931)
+..|+-+.+.+|+|+|||...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 367888999999999999864
No 301
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=55.83 E-value=6.2 Score=42.38 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=14.2
Q ss_pred cEEEEcCCCCCcHHHH
Q 002357 93 SVLVSAHTSAGKTAVA 108 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~ 108 (931)
.++|+||||||||.++
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999865
No 302
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=55.75 E-value=6.2 Score=42.08 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=14.2
Q ss_pred cEEEEcCCCCCcHHHH
Q 002357 93 SVLVSAHTSAGKTAVA 108 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~ 108 (931)
.+++++|||||||.++
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999865
No 303
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=55.75 E-value=9.8 Score=43.71 Aligned_cols=51 Identities=22% Similarity=0.263 Sum_probs=33.5
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHH
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYREL 139 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l 139 (931)
+..|..+++.+|+|+|||......+......|.+++|+++... ..|.....
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~-~~~l~~~~ 328 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES-RAQLLRNA 328 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC-HHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHH
Confidence 3567889999999999998765443333345677888876533 23444333
No 304
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=55.66 E-value=4.8 Score=38.03 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=15.3
Q ss_pred cEEEEcCCCCCcHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l 110 (931)
.+++.|+.|||||.++-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999998643
No 305
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=55.33 E-value=9.2 Score=42.67 Aligned_cols=91 Identities=19% Similarity=0.207 Sum_probs=48.2
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhC-CCEEEEEc--CchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~-~~rvl~l~--P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (931)
..+++++++|+|||..+.-.+...... |.+|+++. |.+..+.++...+.... ++.++.++.. .+|..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~-~l~v~~~~~~---------~dp~~ 170 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQV-GVDFFPSDVG---------QKPVD 170 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHH-TCEECCCCSS---------SCHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccC-CeeEEeCCCC---------CCHHH
Confidence 357788999999998765433333344 77877665 44444444333332221 2333332211 13443
Q ss_pred H-HHHHhcCccccCcccEEEEeccccC
Q 002357 169 L-RGMLYRGSEVLKEVAWVIFDEIHYM 194 (931)
Q Consensus 169 L-~~~l~~~~~~l~~l~~vViDEaH~l 194 (931)
+ ...+.... ..++++||+|=+=++
T Consensus 171 i~~~~l~~~~--~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 171 IVNAALKEAK--LKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHHHHHHHH--HTTCSEEEEECCCCC
T ss_pred HHHHHHHHHH--hCCCCEEEEECCCcc
Confidence 3 33332211 136799999987544
No 306
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=55.17 E-value=5.5 Score=39.09 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=17.9
Q ss_pred hcCCcEEEEcCCCCCcHHHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l 110 (931)
..|..+++.+|.|||||.++-.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~ 48 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHG 48 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 4578899999999999987643
No 307
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=55.14 E-value=6.9 Score=37.87 Aligned_cols=18 Identities=17% Similarity=0.488 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCCcHHHH
Q 002357 91 NESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~ 108 (931)
++-+.+.+|+|+|||...
T Consensus 1 ~~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCCEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 355789999999999874
No 308
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=54.67 E-value=4.8 Score=38.35 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=17.1
Q ss_pred cCCcEEEEcCCCCCcHHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l 110 (931)
.|..+++.++.|||||.++-.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 356789999999999987643
No 309
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=54.56 E-value=5.7 Score=39.21 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=17.5
Q ss_pred HHhcCCcEEEEcCCCCCcHHHH
Q 002357 87 CLERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 87 ~l~~g~~vlv~apTGsGKTl~~ 108 (931)
.+..|+-+.+.+|+|||||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 6788999999999999999864
No 310
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=54.55 E-value=7.7 Score=37.77 Aligned_cols=20 Identities=5% Similarity=0.189 Sum_probs=15.9
Q ss_pred CCCeeEecHHHHHHHHhcCc
Q 002357 158 NASCLVMTTEILRGMLYRGS 177 (931)
Q Consensus 158 ~~~IlV~Tpe~L~~~l~~~~ 177 (931)
+.+..+.|.+.+..++..+.
T Consensus 47 G~dY~Fvs~~eF~~~i~~g~ 66 (186)
T 1ex7_A 47 GKDYNFVSVDEFKSMIKNNE 66 (186)
T ss_dssp TTTBEECCHHHHHHHHHTTC
T ss_pred CceeEeecHHHHHHHHHcCC
Confidence 46778889999988887664
No 311
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=54.54 E-value=5.2 Score=38.13 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.6
Q ss_pred cEEEEcCCCCCcHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~ 109 (931)
.+++.|++|||||.++-
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 47899999999999763
No 312
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=54.42 E-value=6.5 Score=41.61 Aligned_cols=35 Identities=9% Similarity=0.127 Sum_probs=24.1
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
..|+.+.+.+|+|||||...-+. ...+ .++++..+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL-~gl~--~G~I~~~v 158 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSL-IHFL--GGSVLSFA 158 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHH-HHHH--TCEEECGG
T ss_pred cCCCEEEEECCCCCcHHHHHHHH-hhhc--CceEEEEe
Confidence 67889999999999999875332 2222 55665433
No 313
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=53.58 E-value=6.8 Score=37.93 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=19.2
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHH
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~ 111 (931)
+.++..+++.|++|||||.++-..
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHH
Confidence 446678999999999999986443
No 314
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=53.54 E-value=7.1 Score=42.94 Aligned_cols=16 Identities=19% Similarity=0.528 Sum_probs=13.7
Q ss_pred cEEEEcCCCCCcHHHH
Q 002357 93 SVLVSAHTSAGKTAVA 108 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~ 108 (931)
-++|+||||+|||.++
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 4789999999999864
No 315
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=53.31 E-value=11 Score=41.00 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE-cCc
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT-SPL 128 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l-~P~ 128 (931)
|.-+.+.+|+|+|||...-......-..++++++. .++
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 195 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence 45678999999999986433222222345565554 344
No 316
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.16 E-value=12 Score=41.42 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCCcHHHH
Q 002357 91 NESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~ 108 (931)
.+.+|+.+|+|+|||+.+
T Consensus 216 prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CSEEEEESSTTTTHHHHH
T ss_pred CCCCceECCCCchHHHHH
Confidence 367999999999999975
No 317
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=53.03 E-value=15 Score=28.59 Aligned_cols=50 Identities=12% Similarity=0.071 Sum_probs=37.8
Q ss_pred CCccHHHHHHH-hhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhh
Q 002357 851 VRPFLMDVIYC-WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAA 900 (931)
Q Consensus 851 ~~~~l~~~v~~-Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ell~qi~~aa 900 (931)
+.+.--.++.. +..|.|+.+|.+..+++++.+=+.+.|.-.-|++.-...
T Consensus 16 L~~~~r~il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~~~ 66 (70)
T 2o8x_A 16 LTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPD 66 (70)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhcc
Confidence 45555566654 699999999999999999999999999888887755433
No 318
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=52.86 E-value=7.1 Score=38.66 Aligned_cols=41 Identities=10% Similarity=0.197 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHhcC----CcEEEEcCCCCCcHHHHHHHHHHHH
Q 002357 74 SFELDPFQRVSVACLERN----ESVLVSAHTSAGKTAVAEYAIAMAF 116 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~g----~~vlv~apTGsGKTl~~~l~i~~~l 116 (931)
+.++-.| ..++..+.++ ..+++.+|.|+|||..+ .+++..+
T Consensus 38 ~~~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 38 QIEFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp TCCHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred CcCHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 3445555 4455555444 35999999999999865 4444443
No 319
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=52.72 E-value=5.4 Score=38.09 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCCCcHHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~ 109 (931)
.+|+-+.+.+|.|||||..+-
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 357778999999999998754
No 320
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=52.63 E-value=7.8 Score=38.81 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=17.2
Q ss_pred HHhcCCcEEEEcCCCCCcHHHH
Q 002357 87 CLERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 87 ~l~~g~~vlv~apTGsGKTl~~ 108 (931)
.+..|+-+++.||.|+|||...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHH
Confidence 3567888999999999999874
No 321
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=52.09 E-value=42 Score=38.82 Aligned_cols=34 Identities=15% Similarity=0.033 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHh-----cCCcEEEEcCCCCCcHHHHHHH
Q 002357 78 DPFQRVSVACLE-----RNESVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 78 ~~~Q~~ai~~l~-----~g~~vlv~apTGsGKTl~~~l~ 111 (931)
++-....+.... ..+-+.|+|+.|.|||..+...
T Consensus 129 R~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~ 167 (591)
T 1z6t_A 129 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEA 167 (591)
T ss_dssp CHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHH
T ss_pred cHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHH
Confidence 444445554443 2346889999999999876543
No 322
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=52.02 E-value=12 Score=37.71 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=24.3
Q ss_pred cEEEEc-CCCCCcHHHHHHHHHHHHhCCCEEEEEcC
Q 002357 93 SVLVSA-HTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (931)
Q Consensus 93 ~vlv~a-pTGsGKTl~~~l~i~~~l~~~~rvl~l~P 127 (931)
.++|.+ .||+|||++...-+....++|.+|.|.=|
T Consensus 6 ~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KP 41 (228)
T 3of5_A 6 KFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKP 41 (228)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecc
Confidence 455555 49999999875544444467888888655
No 323
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=51.95 E-value=8.5 Score=41.96 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCCcHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~ 109 (931)
..++++.||+|+|||.++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4689999999999998764
No 324
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=51.82 E-value=18 Score=49.73 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=38.6
Q ss_pred ccCCCCCCHHHHHHH----HHHhcCCcEEEEcCCCCCcHHHHHHHH--HHHHhCCCEEEEEcCchhhHHH
Q 002357 71 KTYSFELDPFQRVSV----ACLERNESVLVSAHTSAGKTAVAEYAI--AMAFRDKQRVIYTSPLKALSNQ 134 (931)
Q Consensus 71 ~~~~f~l~~~Q~~ai----~~l~~g~~vlv~apTGsGKTl~~~l~i--~~~l~~~~rvl~l~P~kaL~~Q 134 (931)
...++.+.+.+..-+ ..+...+.|++.||||||||.++-... +..+......+++...+++..+
T Consensus 899 ~~~~l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~t~~ 968 (2695)
T 4akg_A 899 QRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKE 968 (2695)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTSCHH
T ss_pred HHcCCcccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHH
Confidence 345667666653322 344667889999999999999875432 2222223334555555666543
No 325
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=51.00 E-value=11 Score=40.10 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=24.8
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCc
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL 128 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~ 128 (931)
-+++.++.|||||... -.+.....+.++.++.|.
T Consensus 6 v~~i~G~~GaGKTTll--~~l~~~~~~~~~aVi~~d 39 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLL--RHILNEQHGYKIAVIENE 39 (318)
T ss_dssp EEEEEESSSSSCHHHH--HHHHHSCCCCCEEEECSS
T ss_pred EEEEEecCCCCHHHHH--HHHHhhcCCCcEEEEEec
Confidence 4689999999999863 223333467788888886
No 326
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=50.98 E-value=15 Score=35.92 Aligned_cols=35 Identities=14% Similarity=0.205 Sum_probs=23.1
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEE
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVI 123 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl 123 (931)
.++..+++.++.|||||.++-......-..+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~ 41 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE 41 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 35677999999999999987544332222344443
No 327
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=50.73 E-value=7.6 Score=36.66 Aligned_cols=20 Identities=15% Similarity=0.348 Sum_probs=17.0
Q ss_pred CcEEEEcCCCCCcHHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~ 111 (931)
+++++.++.|||||.++-..
T Consensus 8 ~~i~l~G~~GsGKSTva~~L 27 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQEL 27 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 58999999999999987543
No 328
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=50.59 E-value=15 Score=41.92 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=19.3
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAM 114 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~ 114 (931)
++.+++|.++||||||.+.-..+..
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~s 190 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILS 190 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999875444433
No 329
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=50.48 E-value=6.1 Score=38.17 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCCcHHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l 110 (931)
+..+++.++.|||||.++-.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~ 24 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQA 24 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999998644
No 330
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=50.29 E-value=6.5 Score=38.83 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCCcHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~ 108 (931)
.|.-+.+.+|+|||||..+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4567889999999999864
No 331
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=50.00 E-value=6.4 Score=41.28 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCCcHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (931)
.-++++||+|||||.++-
T Consensus 34 ~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEEECCTTSCTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458899999999998753
No 332
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=50.00 E-value=34 Score=37.28 Aligned_cols=72 Identities=21% Similarity=0.094 Sum_probs=54.3
Q ss_pred HHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccc
Q 002357 111 AIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEV 179 (931)
Q Consensus 111 ~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~ 179 (931)
.++.....+.++||.++++.-+...++.+.+..-.+..++|+.+. +...+|+|+|. .+.+| ..
T Consensus 268 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G-id 341 (417)
T 2i4i_A 268 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAARG-LD 341 (417)
T ss_dssp HHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHTT-SC
T ss_pred HHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhcC-CC
Confidence 333333457899999999999999999999887789999998763 24678999995 34444 34
Q ss_pred cCcccEEEE
Q 002357 180 LKEVAWVIF 188 (931)
Q Consensus 180 l~~l~~vVi 188 (931)
+.++++||.
T Consensus 342 ip~v~~Vi~ 350 (417)
T 2i4i_A 342 ISNVKHVIN 350 (417)
T ss_dssp CCCEEEEEE
T ss_pred cccCCEEEE
Confidence 677888875
No 333
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=49.95 E-value=15 Score=35.19 Aligned_cols=32 Identities=16% Similarity=0.042 Sum_probs=20.3
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEE
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIY 124 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~ 124 (931)
.+++.|+.|||||.++.......-..|..++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 37899999999999865433322223544444
No 334
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=49.95 E-value=12 Score=26.54 Aligned_cols=34 Identities=6% Similarity=-0.138 Sum_probs=29.7
Q ss_pred HHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHH
Q 002357 856 MDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRL 889 (931)
Q Consensus 856 ~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl 889 (931)
..++..|..|.|..+|.+..++...+|-|++++.
T Consensus 12 ~~i~~~~~~g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 12 AQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 3567778899999999999999999999988764
No 335
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=49.35 E-value=22 Score=34.64 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=17.7
Q ss_pred cCCcEEEEcCCCCCcHHHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~ 111 (931)
++..+++.|+.|||||.++...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L 24 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLL 24 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 4556899999999999987543
No 336
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=48.85 E-value=6.6 Score=37.87 Aligned_cols=20 Identities=25% Similarity=0.177 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCCcHHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l 110 (931)
+..+++.+++|||||.++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45688999999999998643
No 337
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=48.78 E-value=7.5 Score=38.95 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCCCcHHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l 110 (931)
++..+++.|++|||||.++-.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~ 26 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSR 26 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHH
Confidence 456799999999999997643
No 338
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=48.51 E-value=9.5 Score=36.95 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=18.4
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHH
Q 002357 88 LERNESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l 110 (931)
+..+..+++.+++|||||.++-.
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~ 31 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEK 31 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHH
Confidence 34567799999999999998643
No 339
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=48.41 E-value=17 Score=34.78 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCCcHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (931)
.-+.+++++|+|||....
T Consensus 7 ~~i~i~G~sGsGKTTl~~ 24 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLK 24 (174)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHH
Confidence 347899999999998643
No 340
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=48.32 E-value=5.9 Score=38.31 Aligned_cols=19 Identities=11% Similarity=0.312 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCCcHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l 110 (931)
.-+++.+|+|||||..+-.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4578999999999987543
No 341
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=48.10 E-value=8.5 Score=36.91 Aligned_cols=19 Identities=11% Similarity=0.293 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCCcHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l 110 (931)
..+++.+++|||||.++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp CSEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4589999999999998643
No 342
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=47.86 E-value=18 Score=35.84 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=22.7
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcC
Q 002357 95 LVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (931)
Q Consensus 95 lv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P 127 (931)
+....+|.|||.++.--+....+.|.+|+++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 345568999998875444434457889998755
No 343
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=47.56 E-value=7.7 Score=37.97 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=16.1
Q ss_pred CcEEEEcCCCCCcHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l 110 (931)
..+++.|+.|||||.++-.
T Consensus 19 ~~I~l~G~~GsGKSTla~~ 37 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEA 37 (202)
T ss_dssp SCEEEECSTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4689999999999997643
No 344
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=47.55 E-value=8.6 Score=37.49 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=17.7
Q ss_pred cCCcEEEEcCCCCCcHHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l 110 (931)
+|..+++.|+.|||||.++-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~ 23 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMN 23 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 467789999999999998643
No 345
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=47.42 E-value=6.4 Score=40.49 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCCcHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~ 109 (931)
...+++.||+|+|||..+.
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4569999999999998764
No 346
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=47.41 E-value=13 Score=42.32 Aligned_cols=118 Identities=11% Similarity=0.083 Sum_probs=58.1
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcC--chhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecH-HHH
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP--LKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT-EIL 169 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P--~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp-e~L 169 (931)
.+++++++|+|||..+.-.+......|.+++++.. .+..+.++.+...... .+.++..... . .| +.+
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~-~i~v~~~~~~----~-----dp~~i~ 172 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKA-RIPFYGSYTE----M-----DPVIIA 172 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHH-TCCEEECCCC----S-----CHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhcc-CceEEccCCC----C-----CHHHHH
Confidence 57789999999998764433333345777777665 3344433333332221 1222221111 0 12 222
Q ss_pred HHHHhcCccccCcccEEEEeccccCCCCCchHHHHHH---HHhcCCCceEEEeccCCC
Q 002357 170 RGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES---IIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 170 ~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~i---i~~l~~~~q~v~lSAT~~ 224 (931)
...+... ...+.+++|+|=+=+.... ...+.++ .....++.-++.+.|+..
T Consensus 173 ~~al~~~--~~~~~DvvIIDTpG~~~~~--~~l~~el~~~~~~i~pd~vllVvDa~~g 226 (504)
T 2j37_W 173 SEGVEKF--KNENFEIIIVDTSGRHKQE--DSLFEEMLQVANAIQPDNIVYVMDASIG 226 (504)
T ss_dssp HHHHHHH--HHTTCCEEEEEECCCCTTC--HHHHHHHHHHHHHHCCSEEEEEEETTCC
T ss_pred HHHHHHH--HHCCCcEEEEeCCCCcccc--hhHHHHHHHHHhhhcCceEEEEEecccc
Confidence 2222211 1146789999998665421 1223332 222234444677777764
No 347
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=47.39 E-value=19 Score=35.23 Aligned_cols=22 Identities=9% Similarity=0.270 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCCcHHHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~ 111 (931)
.+..+++.|+.|||||.++-..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L 30 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLL 30 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHH
Confidence 4567899999999999987543
No 348
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=47.36 E-value=1e+02 Score=36.30 Aligned_cols=78 Identities=19% Similarity=0.164 Sum_probs=59.8
Q ss_pred HHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccc-----------cCCCCCeeEecHHHHHHHHhcCcccc
Q 002357 112 IAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVT-----------LSPNASCLVMTTEILRGMLYRGSEVL 180 (931)
Q Consensus 112 i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~-----------~~~~~~IlV~Tpe~L~~~l~~~~~~l 180 (931)
+......+.++||.++++.-+...++.|....-.+..++|+.+ .+...+|+|+|. .+.+| ..+
T Consensus 438 l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~~G-lDi 511 (661)
T 2d7d_A 438 IQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLREG-LDI 511 (661)
T ss_dssp HHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCSTT-CCC
T ss_pred HHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhhCC-ccc
Confidence 3344457889999999999999999999988668888898864 134678999985 34444 347
Q ss_pred CcccEEEEeccccCC
Q 002357 181 KEVAWVIFDEIHYMK 195 (931)
Q Consensus 181 ~~l~~vViDEaH~l~ 195 (931)
.++++||+-+++...
T Consensus 512 p~v~lVi~~d~d~~G 526 (661)
T 2d7d_A 512 PEVSLVAILDADKEG 526 (661)
T ss_dssp TTEEEEEETTTTCCT
T ss_pred CCCCEEEEeCccccc
Confidence 789999998887553
No 349
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=47.29 E-value=7.8 Score=38.91 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=13.3
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
..|+-+.+.+|+|||||.+.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 56778899999999999874
No 350
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=47.11 E-value=5.9 Score=42.54 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=17.1
Q ss_pred cCCcEEEEcCCCCCcHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~ 109 (931)
...++++.||+|+|||..+.
T Consensus 44 ~~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHH
T ss_pred CCceEEEECCCCccHHHHHH
Confidence 45679999999999998764
No 351
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=47.05 E-value=8.2 Score=39.34 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCCcHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (931)
+.+++.+|+|+|||..+-
T Consensus 50 ~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458999999999998753
No 352
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=46.96 E-value=12 Score=38.33 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.3
Q ss_pred cCCcEEEEcCCCCCcHHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l 110 (931)
.|+.+++.+++|||||.++-.
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 489999999999999998643
No 353
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=46.81 E-value=11 Score=37.06 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=15.8
Q ss_pred cEEEEcCCCCCcHHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~ 111 (931)
.+++.|+.|||||.++-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999987543
No 354
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=46.78 E-value=16 Score=39.03 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=24.9
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
.-+++++..|.|||.++..........|.+|+++.
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34667899999999877544444446688888774
No 355
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=46.72 E-value=13 Score=36.90 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=17.7
Q ss_pred cCCcEEEEcCCCCCcHHHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~ 111 (931)
.+..+++.++.|||||.++-..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~L 24 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNL 24 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3567899999999999986543
No 356
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=46.70 E-value=7.5 Score=38.28 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCCCcHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~ 109 (931)
.|.-+.+.+|+|||||..+-
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~ 24 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQ 24 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHH
Confidence 45667899999999998753
No 357
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=46.63 E-value=18 Score=36.00 Aligned_cols=37 Identities=19% Similarity=0.109 Sum_probs=24.2
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l 125 (931)
.+|.-+++.++.|||||..+.......-..+..++.+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 3566788999999999998755433332345555444
No 358
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=46.32 E-value=9.2 Score=37.33 Aligned_cols=20 Identities=30% Similarity=0.205 Sum_probs=16.5
Q ss_pred CcEEEEcCCCCCcHHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~ 111 (931)
..+++.+++|||||.++-..
T Consensus 21 ~~I~l~G~~GsGKST~a~~L 40 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKL 40 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999986443
No 359
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=46.29 E-value=17 Score=38.79 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=25.1
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCc
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL 128 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~ 128 (931)
-+++++..|.|||.++.-........|.+|+++..-
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D 51 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMARSGKKTLVISTD 51 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 457789999999988754333333568888777643
No 360
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=45.84 E-value=16 Score=41.25 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=17.7
Q ss_pred cCCcEEEEcCCCCCcHHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l 110 (931)
...++++.||+|+|||.++..
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHH
Confidence 456899999999999998743
No 361
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=45.79 E-value=13 Score=35.18 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=15.6
Q ss_pred cEEEEcCCCCCcHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l 110 (931)
.+++.++.|||||.++..
T Consensus 6 ~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 689999999999998643
No 362
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=45.61 E-value=14 Score=36.79 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=17.7
Q ss_pred cCCcEEEEcCCCCCcHHHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~ 111 (931)
.+..+++.|+.|||||.++-..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~L 25 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELI 25 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3457999999999999987543
No 363
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=45.53 E-value=59 Score=38.35 Aligned_cols=77 Identities=16% Similarity=0.099 Sum_probs=58.1
Q ss_pred HHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccc-----------cCCCCCeeEecHHHHHHHHhcCcccc
Q 002357 112 IAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVT-----------LSPNASCLVMTTEILRGMLYRGSEVL 180 (931)
Q Consensus 112 i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~-----------~~~~~~IlV~Tpe~L~~~l~~~~~~l 180 (931)
+......+.++||.++++.-+...++.|.+..-.+..++|+.+ .+...+|+|+|. .+.+| ..+
T Consensus 432 l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~~G-lDi 505 (664)
T 1c4o_A 432 IRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLREG-LDI 505 (664)
T ss_dssp HHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCCTT-CCC
T ss_pred HHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhhcC-ccC
Confidence 3344457889999999999999999999988768888898863 234678999984 33444 346
Q ss_pred CcccEEEEeccccC
Q 002357 181 KEVAWVIFDEIHYM 194 (931)
Q Consensus 181 ~~l~~vViDEaH~l 194 (931)
.++++||+=+++..
T Consensus 506 p~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 506 PEVSLVAILDADKE 519 (664)
T ss_dssp TTEEEEEETTTTSC
T ss_pred CCCCEEEEeCCccc
Confidence 78898888777644
No 364
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=45.49 E-value=18 Score=37.39 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=21.8
Q ss_pred CCHHHHHH-HHHHhcCC-----cEEEEcCCCCCcHHHHH
Q 002357 77 LDPFQRVS-VACLERNE-----SVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 77 l~~~Q~~a-i~~l~~g~-----~vlv~apTGsGKTl~~~ 109 (931)
.++.+... +..+.+++ .+++.+|+|+|||+.+.
T Consensus 84 ~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 84 YDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 34454333 44454443 48999999999999763
No 365
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=45.34 E-value=9.5 Score=36.00 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCCcHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l 110 (931)
..+++.++.|||||.++-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CCEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3588999999999998644
No 366
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=45.34 E-value=12 Score=36.99 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=15.4
Q ss_pred cEEEEcCCCCCcHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l 110 (931)
.+++.||.|||||.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999998654
No 367
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=45.32 E-value=26 Score=44.53 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=41.0
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHh-CC-----------CEEEEEcCchhhHHHHHHHHHHhcC
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAFR-DK-----------QRVIYTSPLKALSNQKYRELHQEFK 144 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~-~~-----------~rvl~l~P~kaL~~Q~~~~l~~~~~ 144 (931)
+.+|.|.-|||||.+-..-++..+. .| .++|+++=|++-+.++..++.+...
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 4599999999999886665666653 22 3799999999999999888877643
No 368
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=45.27 E-value=18 Score=42.19 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
.+-+++++..|.|||.++.-........|.+|+++.
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd 43 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS 43 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 356788999999999887654444446688888865
No 369
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=45.25 E-value=9.1 Score=37.59 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCCcHHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~ 109 (931)
..+..+.+.+++|||||.++-
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 445678899999999998753
No 370
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=44.64 E-value=13 Score=40.44 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=14.6
Q ss_pred cEEEEcCCCCCcHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~ 109 (931)
-.++.+|||||||.++.
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46799999999998864
No 371
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=44.50 E-value=31 Score=39.48 Aligned_cols=75 Identities=12% Similarity=-0.020 Sum_probs=58.5
Q ss_pred CCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHH
Q 002357 329 FQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKE 408 (931)
Q Consensus 329 ~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~ 408 (931)
.+.+||.++++.-+......|...+.. +..+||+.+..++.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~---------------------------------------~~~l~~~~~~~~~~ 105 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVA---------------------------------------AACLNSTQTREQQL 105 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCC---------------------------------------EEEECTTSCHHHHH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCc---------------------------------------EEEEeCCCCHHHHH
Confidence 367999999999999888888775543 57889999999999
Q ss_pred HHHHHHhcCCceEEEecch------hhcccCCCCcEEEEe
Q 002357 409 LVELLFQEGLVKALFATET------FAMGLNMPAKTVVFT 442 (931)
Q Consensus 409 ~v~~~F~~g~i~vLvaT~~------la~GIdip~~~vVI~ 442 (931)
.+...+..|..++|++|.- +...++.....+||.
T Consensus 106 ~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vVi 145 (523)
T 1oyw_A 106 EVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAV 145 (523)
T ss_dssp HHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEE
T ss_pred HHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEE
Confidence 9999999999999999863 122344456666654
No 372
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=44.35 E-value=43 Score=35.14 Aligned_cols=65 Identities=20% Similarity=0.213 Sum_probs=51.3
Q ss_pred CCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEE
Q 002357 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (931)
Q Consensus 118 ~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (931)
.+.++||.++++.-+...++.+....-.+..++|+.+. +...+|+|+|. .+.++ ..+.++++|
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~~G-idi~~v~~V 100 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAARG-LDIPQVDLV 100 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTTCS-TTCCCCSEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhhcC-ccccceeEE
Confidence 47899999999999999999998876688999998753 24678999993 44444 346788888
Q ss_pred EE
Q 002357 187 IF 188 (931)
Q Consensus 187 Vi 188 (931)
|.
T Consensus 101 I~ 102 (300)
T 3i32_A 101 VH 102 (300)
T ss_dssp EE
T ss_pred EE
Confidence 84
No 373
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=44.31 E-value=8.3 Score=36.84 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=12.9
Q ss_pred cCCcEEEEcCCCCCcHHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l 110 (931)
++..+++.++.|||||.++..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp -CCEEEEECCC----CHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 356789999999999998644
No 374
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=43.84 E-value=41 Score=36.75 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHH---hcCCcEEEEcCCCCCcHHHHHH
Q 002357 77 LDPFQRVSVACL---ERNESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 77 l~~~Q~~ai~~l---~~g~~vlv~apTGsGKTl~~~l 110 (931)
+-..=.++|+.+ .+|+.+.+.+|+|+|||.....
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~ 193 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQN 193 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHHHH
Confidence 334445667765 6799999999999999987643
No 375
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=43.45 E-value=54 Score=30.90 Aligned_cols=65 Identities=12% Similarity=-0.002 Sum_probs=49.7
Q ss_pred CCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEE
Q 002357 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (931)
Q Consensus 118 ~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (931)
.+.++||.++++.-+...++.|....-.+..++|+.+. +....|+|+|. .+.+| ..+.++++|
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G-ldi~~~~~V 103 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFGRG-MDIERVNIA 103 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CCSTT-CCGGGCSEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----chhcC-cchhhCCEE
Confidence 56789999999999999999999887788999998752 34678888884 23333 335677777
Q ss_pred EE
Q 002357 187 IF 188 (931)
Q Consensus 187 Vi 188 (931)
|.
T Consensus 104 i~ 105 (172)
T 1t5i_A 104 FN 105 (172)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 376
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=43.45 E-value=11 Score=37.35 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCCcHHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l 110 (931)
+..+.+.+|+|||||.++-+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35688999999999998644
No 377
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=43.45 E-value=30 Score=40.22 Aligned_cols=75 Identities=11% Similarity=0.038 Sum_probs=57.9
Q ss_pred CCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHH
Q 002357 329 FQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKE 408 (931)
Q Consensus 329 ~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~ 408 (931)
.+.+||.++++.-+...+..|...++. +..++|+++..++.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~---------------------------------------~~~l~~~~~~~~~~ 124 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGIS---------------------------------------ATMLNASSSKEHVK 124 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCC---------------------------------------EEECCSSCCHHHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCc---------------------------------------EEEEeCCCCHHHHH
Confidence 468999999999999888888765443 57899999999999
Q ss_pred HHHHHH--hcCCceEEEecch-h----------hcccCCCCcEEEEe
Q 002357 409 LVELLF--QEGLVKALFATET-F----------AMGLNMPAKTVVFT 442 (931)
Q Consensus 409 ~v~~~F--~~g~i~vLvaT~~-l----------a~GIdip~~~vVI~ 442 (931)
.+...+ ..+..+|||+|.- + ....+...+++||.
T Consensus 125 ~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iVi 171 (591)
T 2v1x_A 125 WVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAV 171 (591)
T ss_dssp HHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEE
Confidence 888888 5789999999982 1 22334566776664
No 378
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=42.85 E-value=4.2 Score=34.08 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=37.1
Q ss_pred CCccH-HHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHh
Q 002357 851 VRPFL-MDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAA 899 (931)
Q Consensus 851 ~~~~l-~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ell~qi~~a 899 (931)
+.+.+ ..+|..+..|.|..+|++..++...+|=||+++..+.-.+.+..
T Consensus 23 ys~e~k~~~v~~~~~g~s~~~iA~~~gIs~sTl~rW~k~~~~~~~~~~~~ 72 (87)
T 2elh_A 23 LTPRDKIHAIQRIHDGESKASVARDIGVPESTLRGWCKNEDKLRFMSRQS 72 (87)
T ss_dssp CCHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHhccccccCC
Confidence 33444 35666667899999999999999999999998877655554443
No 379
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=42.73 E-value=19 Score=35.85 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=21.5
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002357 95 LVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 95 lv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
+.++..|.|||.++..........|.+|+++=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRGRKVLAVD 38 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 44677899999876543333335677888774
No 380
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=42.69 E-value=20 Score=38.62 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=23.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002357 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
+++++..|.|||.++.-........|.+|+++.
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 567899999999877543333335688888876
No 381
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=42.51 E-value=8.2 Score=38.00 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=14.9
Q ss_pred EEEEcCCCCCcHHHHHHH
Q 002357 94 VLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~ 111 (931)
+++.|+.|||||..+...
T Consensus 3 I~i~G~~GsGKsTl~~~L 20 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKL 20 (214)
T ss_dssp EEEEEEEEEEHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 678999999999976543
No 382
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=42.42 E-value=16 Score=36.59 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=18.3
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~ 111 (931)
..+..+++.+++|||||.++...
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~L 36 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKL 36 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 34567999999999999987543
No 383
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=42.19 E-value=11 Score=36.05 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=15.7
Q ss_pred cEEEEcCCCCCcHHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~ 111 (931)
.+++.+++|||||.++-..
T Consensus 8 ~I~l~G~~GsGKsT~~~~L 26 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANI 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999986443
No 384
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=41.98 E-value=16 Score=36.13 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCCCcHHHHHHH
Q 002357 91 NESVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~ 111 (931)
+..+++.++.|||||.++-..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~L 25 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFI 25 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 457899999999999986543
No 385
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=41.92 E-value=22 Score=36.11 Aligned_cols=32 Identities=16% Similarity=0.111 Sum_probs=21.7
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002357 95 LVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 95 lv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
++++..|.|||.++.-........|.+|+++=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45788899999876543333335677887763
No 386
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=41.72 E-value=11 Score=38.38 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=17.6
Q ss_pred hcCCcEEEEcCCCCCcHHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~ 109 (931)
..|..+.+.+|+|||||.++-
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 456788999999999999764
No 387
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=41.66 E-value=13 Score=34.93 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=15.3
Q ss_pred cEEEEcCCCCCcHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l 110 (931)
.+++.++.|||||.++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSL 19 (168)
T ss_dssp EEEEESCTTSCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 478999999999998644
No 388
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=41.52 E-value=26 Score=40.24 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=25.3
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhC----CCEEEEEcCc
Q 002357 91 NESVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYTSPL 128 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~----~~rvl~l~P~ 128 (931)
..+++|.+.||||||.+.-..+...+.. ..+++++=|-
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 4689999999999998765555544432 2345555454
No 389
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=41.43 E-value=11 Score=38.93 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCCcHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (931)
..+++.+|+|+|||..+-
T Consensus 74 ~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcChHHHHHH
Confidence 358999999999998753
No 390
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=41.09 E-value=86 Score=33.77 Aligned_cols=65 Identities=22% Similarity=0.252 Sum_probs=52.2
Q ss_pred CCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEE
Q 002357 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (931)
Q Consensus 118 ~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (931)
.+.++|+.++++.-+...++.+.+....+..++|+.+. +...+|+|+|. .+..| ..+.++++|
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G-idip~~~~V 338 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCARG-IDVEQVSVV 338 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTSS-CCCTTEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccccC-CCccCCCEE
Confidence 56799999999999999999999987789999998752 34678999995 44444 346788888
Q ss_pred EE
Q 002357 187 IF 188 (931)
Q Consensus 187 Vi 188 (931)
|.
T Consensus 339 i~ 340 (412)
T 3fht_A 339 IN 340 (412)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 391
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=41.09 E-value=11 Score=36.71 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCCcHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (931)
..+++.|+.|||||.++-
T Consensus 16 ~~I~l~G~~GsGKsT~~~ 33 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCE 33 (203)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 358899999999999763
No 392
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=40.96 E-value=19 Score=35.00 Aligned_cols=114 Identities=11% Similarity=0.108 Sum_probs=60.2
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcC--chhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHHHH
Q 002357 95 LVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP--LKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGM 172 (931)
Q Consensus 95 lv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P--~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~~ 172 (931)
+.++..|.|||.++..........|.+|+++=- ...+.. ++.. ...+.+++-+.++.+...
T Consensus 6 v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~--------~~~~---------~~~~~~~~~~~~~~l~~~ 68 (206)
T 4dzz_A 6 FLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTN--------WSKA---------GKAAFDVFTAASEKDVYG 68 (206)
T ss_dssp ECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH--------HHTT---------SCCSSEEEECCSHHHHHT
T ss_pred EEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHH--------HHhc---------CCCCCcEEecCcHHHHHH
Confidence 345678899998875544433457788877753 222221 1110 011244555555667666
Q ss_pred HhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCCChHHHHHHHHhh
Q 002357 173 LYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHL 236 (931)
Q Consensus 173 l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~~~ 236 (931)
+..- -.++++||+|=.-.+ +.....++.. .+.-++-+.++... .....++...
T Consensus 69 l~~l---~~~yD~viiD~~~~~-----~~~~~~~l~~--ad~viiv~~~~~~~-~~~~~~~~~l 121 (206)
T 4dzz_A 69 IRKD---LADYDFAIVDGAGSL-----SVITSAAVMV--SDLVIIPVTPSPLD-FSAAGSVVTV 121 (206)
T ss_dssp HHHH---TTTSSEEEEECCSSS-----SHHHHHHHHH--CSEEEEEECSCTTT-HHHHHHHHHH
T ss_pred HHHh---cCCCCEEEEECCCCC-----CHHHHHHHHH--CCEEEEEecCCHHH-HHHHHHHHHH
Confidence 6542 236899999965433 2222333333 23445556666665 5544544443
No 393
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=40.94 E-value=15 Score=37.21 Aligned_cols=22 Identities=9% Similarity=0.075 Sum_probs=17.9
Q ss_pred cCCcEEEEcCCCCCcHHHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~ 111 (931)
.+..+++.||.|||||.++...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L 49 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNL 49 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4567999999999999986543
No 394
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=40.87 E-value=23 Score=38.27 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=23.0
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
.+.+++++|+|||..+.--+......+.++.++.
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 5788999999999876443333334566665544
No 395
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=40.82 E-value=12 Score=38.92 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCCcHHHH
Q 002357 92 ESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~ 108 (931)
+.+++.+|+|+|||..+
T Consensus 45 ~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp SEEEEESSTTSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 44999999999999875
No 396
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=40.66 E-value=56 Score=31.93 Aligned_cols=78 Identities=17% Similarity=0.143 Sum_probs=51.2
Q ss_pred CCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHH
Q 002357 329 FQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKE 408 (931)
Q Consensus 329 ~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~ 408 (931)
..++||.++++.-+...+..+.+..... + ...+..++|+.......
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~-------------------------~---------~~~v~~~~g~~~~~~~~ 127 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYM-------------------------P---------NVKVAVFFGGLSIKKDE 127 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTS-------------------------T---------TCCEEEESCCSCHHHHH
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhC-------------------------C---------CceEEEEeCCCChHHHH
Confidence 3479999999999999888775421110 0 01267889998866544
Q ss_pred HHHHHHhcCCceEEEecchh------hcccCCCCcEEEEec
Q 002357 409 LVELLFQEGLVKALFATETF------AMGLNMPAKTVVFTA 443 (931)
Q Consensus 409 ~v~~~F~~g~i~vLvaT~~l------a~GIdip~~~vVI~~ 443 (931)
. .+.++..+|+|+|.-. ...+++...++||..
T Consensus 128 ~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViD 165 (220)
T 1t6n_A 128 E---VLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILD 165 (220)
T ss_dssp H---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred H---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEc
Confidence 3 3455777999999621 234667777776643
No 397
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=40.51 E-value=14 Score=39.46 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCCcHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (931)
..+++.+|+|+|||..+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 679999999999998753
No 398
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=40.46 E-value=16 Score=36.50 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~ 111 (931)
.+.+-+++.+|+|||||..+...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L 49 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKL 49 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 34456788999999999876543
No 399
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=40.38 E-value=12 Score=41.64 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCCcHHHH
Q 002357 91 NESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~ 108 (931)
..++++.+|+|+|||.++
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999876
No 400
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=40.36 E-value=22 Score=36.41 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=21.4
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002357 95 LVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 95 lv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
+.++..|.|||.++.-........|.+|+++=
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD 54 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQGKKVGILD 54 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34677889999877543333335678888754
No 401
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=40.26 E-value=17 Score=35.88 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=16.0
Q ss_pred cEEEEcCCCCCcHHHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEYAI 112 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i 112 (931)
.+++.+|+||||+..+....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47889999999998775443
No 402
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=40.25 E-value=12 Score=36.43 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=15.0
Q ss_pred cEEEEcCCCCCcHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l 110 (931)
.+++.|++|||||.++-.
T Consensus 2 ~I~i~G~~GsGKsT~~~~ 19 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAE 19 (205)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 478999999999997643
No 403
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=40.15 E-value=8.9 Score=39.23 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCCcHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (931)
..+++.|++|||||.++-
T Consensus 33 ~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp EEEEEESCGGGTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999999753
No 404
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=39.82 E-value=22 Score=35.67 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=22.0
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC----CCEEEEE
Q 002357 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYT 125 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~----~~rvl~l 125 (931)
+.+|.-+++.++.|||||.......-..-.. +..++++
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 3567889999999999999865433322222 5555544
No 405
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=39.67 E-value=13 Score=34.49 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=13.7
Q ss_pred cEEEEcCCCCCcHHHH
Q 002357 93 SVLVSAHTSAGKTAVA 108 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~ 108 (931)
-.++.+|+|+|||.+.
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999874
No 406
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=39.58 E-value=17 Score=35.85 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=15.8
Q ss_pred cEEEEcCCCCCcHHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~ 111 (931)
.+++.++.|||||.++-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFI 20 (214)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999986543
No 407
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=39.48 E-value=15 Score=47.19 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
..|+.+-+++|||||||...
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~ 1122 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVV 1122 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHH
T ss_pred CCCCEEEEECCCCChHHHHH
Confidence 56889999999999999863
No 408
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=39.39 E-value=12 Score=36.55 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=15.1
Q ss_pred cEEEEcCCCCCcHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l 110 (931)
.+.+.++.|||||.++-.
T Consensus 3 ~i~i~G~~GsGKSTl~~~ 20 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQM 20 (204)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 478999999999997643
No 409
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=39.28 E-value=12 Score=36.53 Aligned_cols=17 Identities=29% Similarity=0.390 Sum_probs=14.3
Q ss_pred cEEEEcCCCCCcHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~ 109 (931)
.+.+.||.|||||.++-
T Consensus 4 ~i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999999754
No 410
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=39.22 E-value=29 Score=39.16 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=27.5
Q ss_pred HHHHHHH---hcCCcEEEEcCCCCCcHHHHHHHHHHHH
Q 002357 82 RVSVACL---ERNESVLVSAHTSAGKTAVAEYAIAMAF 116 (931)
Q Consensus 82 ~~ai~~l---~~g~~vlv~apTGsGKTl~~~l~i~~~l 116 (931)
.++|+.+ -+|+.+.+.|+.|+|||..++-.|.+..
T Consensus 150 iraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~ 187 (510)
T 2ck3_A 150 IKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQK 187 (510)
T ss_dssp CHHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTH
T ss_pred ceeeccccccccCCEEEEecCCCCCchHHHHHHHHHHH
Confidence 4678776 7899999999999999998654555443
No 411
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=39.15 E-value=30 Score=34.25 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=24.8
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCC-EEEE-EcCch
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ-RVIY-TSPLK 129 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~-rvl~-l~P~k 129 (931)
+|.-+++.++.|||||..........-..+. .+++ =-|..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~ 43 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGG 43 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCC
Confidence 4667889999999999986544333323443 3433 33443
No 412
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=38.96 E-value=23 Score=35.57 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=23.0
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l 125 (931)
.|.-+++.++.|||||..+.... ..+..+..++.+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~-~~l~~~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVY-HRLVKDYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH-HHHTTTSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH-HHHhcCCCceee
Confidence 56778999999999999864433 333324444433
No 413
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=38.88 E-value=24 Score=35.74 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=21.0
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE
Q 002357 95 LVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (931)
Q Consensus 95 lv~apTGsGKTl~~~l~i~~~l~~~~rvl~l 125 (931)
+.++..|.|||.++.-........|.+|+++
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 4467788999987654333333567888775
No 414
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=38.83 E-value=12 Score=43.84 Aligned_cols=16 Identities=13% Similarity=0.326 Sum_probs=14.9
Q ss_pred cEEEEcCCCCCcHHHH
Q 002357 93 SVLVSAHTSAGKTAVA 108 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~ 108 (931)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999865
No 415
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=38.81 E-value=22 Score=40.79 Aligned_cols=39 Identities=18% Similarity=0.117 Sum_probs=26.5
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHH-HHHHHhCCCEEEEEcC
Q 002357 89 ERNESVLVSAHTSAGKTAVAEYA-IAMAFRDKQRVIYTSP 127 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~-i~~~l~~~~rvl~l~P 127 (931)
..|+.+++.+|+|||||..+... +.-.+..+...+|+.-
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 46789999999999999876543 2333333445666653
No 416
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=38.65 E-value=14 Score=35.90 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=15.7
Q ss_pred CcEEEEcCCCCCcHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l 110 (931)
..+.+.+++|||||.++-.
T Consensus 9 ~~I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAAL 27 (203)
T ss_dssp EEEEEEECTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3578999999999998644
No 417
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=38.51 E-value=14 Score=37.41 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCCCcHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~ 109 (931)
++..+++.||.|||||..+-
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45789999999999998753
No 418
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=38.47 E-value=14 Score=37.30 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=16.9
Q ss_pred hcCCcEEEEcCCCCCcHHH
Q 002357 89 ERNESVLVSAHTSAGKTAV 107 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~ 107 (931)
..|+-+.+.+|.|||||..
T Consensus 29 ~~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 5788899999999999985
No 419
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=38.40 E-value=17 Score=39.10 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=16.9
Q ss_pred HHhcCCc--EEEEcCCCCCcHHHH
Q 002357 87 CLERNES--VLVSAHTSAGKTAVA 108 (931)
Q Consensus 87 ~l~~g~~--vlv~apTGsGKTl~~ 108 (931)
.+.+|.| ++.-++||||||...
T Consensus 80 ~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 80 SSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp GGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHCCcceeEEEeCCCCCCCceEe
Confidence 3367776 567899999999864
No 420
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=38.36 E-value=25 Score=35.72 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=22.4
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
-+++.+..|+|||..+.-.+.... .+.+++++.
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 478899999999987543333222 666776665
No 421
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=38.21 E-value=32 Score=34.75 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=22.6
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCE
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQR 121 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~r 121 (931)
+|.-+++.++.|||||..+.......-..+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 57788999999999999865544333344545
No 422
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=38.00 E-value=18 Score=39.85 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=18.0
Q ss_pred HHHHhcCCc--EEEEcCCCCCcHHHH
Q 002357 85 VACLERNES--VLVSAHTSAGKTAVA 108 (931)
Q Consensus 85 i~~l~~g~~--vlv~apTGsGKTl~~ 108 (931)
+..+..|.| ++.-++||||||...
T Consensus 133 v~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 133 VQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHhCCcceEEEEECCCCCCCceEe
Confidence 344467776 567899999999874
No 423
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=37.99 E-value=49 Score=35.07 Aligned_cols=66 Identities=17% Similarity=0.149 Sum_probs=50.6
Q ss_pred hCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccE
Q 002357 117 RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAW 185 (931)
Q Consensus 117 ~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~ 185 (931)
..+.++||.++++.-+...++.+++....+..++|+.+. +...+|+|+|. .+..| ..+.++++
T Consensus 236 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G-id~~~~~~ 309 (367)
T 1hv8_A 236 NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSRG-IDVNDLNC 309 (367)
T ss_dssp STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHHH-CCCSCCSE
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcC-CCcccCCE
Confidence 356789999999999999999999887789999998752 34678999984 33333 23667888
Q ss_pred EEE
Q 002357 186 VIF 188 (931)
Q Consensus 186 vVi 188 (931)
||.
T Consensus 310 Vi~ 312 (367)
T 1hv8_A 310 VIN 312 (367)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 424
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=37.91 E-value=22 Score=40.16 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=27.2
Q ss_pred HHHHHHH---hcCCcEEEEcCCCCCcHHHHHHHHHHH
Q 002357 82 RVSVACL---ERNESVLVSAHTSAGKTAVAEYAIAMA 115 (931)
Q Consensus 82 ~~ai~~l---~~g~~vlv~apTGsGKTl~~~l~i~~~ 115 (931)
.++|+.+ -+|+.+.+.|+.|+|||..++-.|.+.
T Consensus 163 iraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~ 199 (515)
T 2r9v_A 163 IKAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQ 199 (515)
T ss_dssp CHHHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTT
T ss_pred ccccccccccccCCEEEEEcCCCCCccHHHHHHHHHh
Confidence 4678776 789999999999999999865455544
No 425
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=37.84 E-value=23 Score=42.62 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=17.7
Q ss_pred cCCcEEEEcCCCCCcHHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l 110 (931)
...++++.+|+|+|||.++..
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHH
Confidence 456899999999999998743
No 426
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=37.76 E-value=18 Score=38.88 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=16.0
Q ss_pred hcCCc--EEEEcCCCCCcHHHH
Q 002357 89 ERNES--VLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~--vlv~apTGsGKTl~~ 108 (931)
.+|.| ++.-++||||||...
T Consensus 81 l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 81 LDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp GGTCCEEEEEECCTTSSHHHHH
T ss_pred cCCceeEEEEECCCCCCCcEec
Confidence 56765 577999999999764
No 427
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=37.65 E-value=17 Score=34.54 Aligned_cols=16 Identities=13% Similarity=0.302 Sum_probs=14.0
Q ss_pred cEEEEcCCCCCcHHHH
Q 002357 93 SVLVSAHTSAGKTAVA 108 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~ 108 (931)
-.++.+|+|+|||.+.
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5689999999999875
No 428
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=37.44 E-value=20 Score=41.75 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=17.7
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
..|+.+.+.+|+|||||...
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll 386 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLM 386 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 56889999999999999863
No 429
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=37.30 E-value=45 Score=35.37 Aligned_cols=16 Identities=13% Similarity=0.326 Sum_probs=13.8
Q ss_pred cEEEEcCCCCCcHHHH
Q 002357 93 SVLVSAHTSAGKTAVA 108 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~ 108 (931)
-+-+.||+|||||..+
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999875
No 430
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=37.21 E-value=24 Score=37.14 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCCcHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~ 109 (931)
.|.-+.+.||+|||||..+-
T Consensus 79 ~g~iigI~G~~GsGKSTl~~ 98 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTAR 98 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 44567789999999998753
No 431
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=36.67 E-value=18 Score=39.25 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=21.9
Q ss_pred CCHHHHHHHH--------HHhcCCc--EEEEcCCCCCcHHHH
Q 002357 77 LDPFQRVSVA--------CLERNES--VLVSAHTSAGKTAVA 108 (931)
Q Consensus 77 l~~~Q~~ai~--------~l~~g~~--vlv~apTGsGKTl~~ 108 (931)
++.-|.+.+. .+..|.| ++.-++||||||...
T Consensus 61 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 61 PNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 4445665543 3356765 677999999999863
No 432
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=36.64 E-value=50 Score=27.47 Aligned_cols=47 Identities=17% Similarity=0.086 Sum_probs=38.1
Q ss_pred CCccHHHHHHH-hhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHH
Q 002357 851 VRPFLMDVIYC-WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLR 897 (931)
Q Consensus 851 ~~~~l~~~v~~-Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ell~qi~ 897 (931)
+.+.--.|+.. +..|.|+.+|.+..++.++.+=+.+.|.-.-|++.-
T Consensus 38 L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 44444466655 689999999999999999999999988888777654
No 433
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=36.59 E-value=1.6e+02 Score=29.18 Aligned_cols=76 Identities=12% Similarity=-0.081 Sum_probs=49.6
Q ss_pred CCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHH
Q 002357 328 KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK 407 (931)
Q Consensus 328 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R 407 (931)
.+..+||.++++.-+..++..+.... ......+...+||......
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~-----------------------------------~~~~~~~~~~~g~~~~~~~ 145 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYC-----------------------------------RACRLKSTCIYGGAPKGPQ 145 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHH-----------------------------------HHTTCCEEEECTTSCHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHH-----------------------------------hhcCceEEEEECCCChHHH
Confidence 34579999999999998887765410 0111236778999887765
Q ss_pred HHHHHHHhcCCceEEEecc-----hhh-cccCCCCcEEEEe
Q 002357 408 ELVELLFQEGLVKALFATE-----TFA-MGLNMPAKTVVFT 442 (931)
Q Consensus 408 ~~v~~~F~~g~i~vLvaT~-----~la-~GIdip~~~vVI~ 442 (931)
..... + ..+|+|+|. .+. ..+++..+.+||.
T Consensus 146 ~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 146 IRDLE---R-GVEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp HHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred HHHhc---C-CCCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 44433 2 368999996 222 2456777777664
No 434
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=36.55 E-value=23 Score=45.53 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=17.8
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
..|+.+.+++|+|||||...
T Consensus 442 ~~G~~vaivG~sGsGKSTll 461 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTII 461 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHH
T ss_pred cCCcEEEEEecCCCcHHHHH
Confidence 56889999999999999874
No 435
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=36.52 E-value=27 Score=37.36 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=25.5
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcC
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P 127 (931)
+-+++++.-|.|||.++.-........|.+|+++.-
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~ 52 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLST 52 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEEC
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 456789999999998875444444456778777663
No 436
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=36.40 E-value=1.2e+02 Score=26.29 Aligned_cols=67 Identities=4% Similarity=0.093 Sum_probs=48.0
Q ss_pred CCccHHHHHHH-hhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhhc
Q 002357 851 VRPFLMDVIYC-WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLR 920 (931)
Q Consensus 851 ~~~~l~~~v~~-Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ell~qi~~aa~~iG~~~L~~k~~~a~~~i~ 920 (931)
+.+.--.++.. +..|.|..+|.+..+++++.+=+.+.|.-.-|++.-... |..+...+.......|+
T Consensus 26 L~~~~r~vl~l~~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~---~~~~~~~~~~~~~~~~~ 93 (113)
T 1xsv_A 26 LTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKL---ELYQKFEQRREIYDEMK 93 (113)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH---hHHhHHHHHHHHHHHHH
Confidence 44455566655 489999999999999999999999999888888764332 33455555555555553
No 437
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=36.34 E-value=22 Score=33.42 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
..|+-+.+.+|.|+|||...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 56778889999999999753
No 438
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=36.32 E-value=14 Score=40.18 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=16.0
Q ss_pred cEEEEcCCCCCcHHHHHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAM 114 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~ 114 (931)
-.++.|+||+|||.+.. ||..
T Consensus 27 l~vi~G~NGaGKT~ile-AI~~ 47 (371)
T 3auy_A 27 IVAIIGENGSGKSSIFE-AVFF 47 (371)
T ss_dssp EEEEEECTTSSHHHHHH-HHHH
T ss_pred eEEEECCCCCCHHHHHH-HHHH
Confidence 46889999999998843 4443
No 439
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=36.30 E-value=18 Score=49.71 Aligned_cols=22 Identities=18% Similarity=0.456 Sum_probs=19.3
Q ss_pred HhcCCcEEEEcCCCCCcHHHHH
Q 002357 88 LERNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~ 109 (931)
+..++++++.||||+|||..+.
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la~ 1285 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIMN 1285 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHHH
Confidence 4778999999999999998763
No 440
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=36.22 E-value=20 Score=35.92 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=22.2
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE
Q 002357 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l 125 (931)
+.|++.-|.|||.++.-........|.+|+++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 55688999999998754433333557777765
No 441
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=36.06 E-value=32 Score=47.84 Aligned_cols=63 Identities=17% Similarity=0.100 Sum_probs=37.5
Q ss_pred ccCCCCCCHHHHHHH----HHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC--CC-EEEEEcCchhhHHH
Q 002357 71 KTYSFELDPFQRVSV----ACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD--KQ-RVIYTSPLKALSNQ 134 (931)
Q Consensus 71 ~~~~f~l~~~Q~~ai----~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~--~~-rvl~l~P~kaL~~Q 134 (931)
...++.+.+.|..=+ +.+...+.+++.||||||||.++-.. ..++.. +. ...++..-|++..+
T Consensus 882 ~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L-~~al~~l~~~~~~~~~iNPKait~~ 951 (3245)
T 3vkg_A 882 KQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVY-LEAIEQVDNIKSEAHVMDPKAITKD 951 (3245)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHH-HHHHTTTTTCEEEEEEECTTTSCHH
T ss_pred HHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHH-HHHHHHhhCCCceEEEECCCCCchh
Confidence 356777766654433 23356678999999999999986432 223321 22 23444444566543
No 442
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=35.51 E-value=14 Score=36.59 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=15.8
Q ss_pred CcEEEEcCCCCCcHHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l 110 (931)
..+.+.++.|||||.++-.
T Consensus 5 ~~I~i~G~~GSGKST~~~~ 23 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANA 23 (218)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578999999999997644
No 443
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=35.49 E-value=55 Score=35.16 Aligned_cols=67 Identities=12% Similarity=-0.002 Sum_probs=51.8
Q ss_pred CCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEE
Q 002357 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (931)
Q Consensus 118 ~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (931)
.+.++||.++++.-+...++.+....-.+..++|+.+. +....|+|+|. .+..| ..+.++++|
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G-idi~~~~~V 322 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFGRG-MDIERVNIA 322 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CCSSC-BCCTTEEEE
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hhhcC-CCcccCCEE
Confidence 56899999999999999999999887788899998652 34678999983 33443 346778888
Q ss_pred EEec
Q 002357 187 IFDE 190 (931)
Q Consensus 187 ViDE 190 (931)
|.-.
T Consensus 323 i~~~ 326 (391)
T 1xti_A 323 FNYD 326 (391)
T ss_dssp EESS
T ss_pred EEeC
Confidence 8643
No 444
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=35.47 E-value=14 Score=37.54 Aligned_cols=21 Identities=38% Similarity=0.371 Sum_probs=17.2
Q ss_pred hcCCcEEEEcCCCCCcHHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~ 109 (931)
..|.-+-+.+|.|||||.++-
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k 43 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCE 43 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 456667899999999999764
No 445
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=35.35 E-value=17 Score=36.76 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=17.3
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
..|+-+.+.+|.|||||...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 56888999999999999863
No 446
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=35.34 E-value=78 Score=33.79 Aligned_cols=68 Identities=24% Similarity=0.312 Sum_probs=53.7
Q ss_pred CCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEE
Q 002357 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (931)
Q Consensus 118 ~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (931)
.+.++|+.++++.-+...++.++.....+..++|+.+. +...+|+|+|. .+..| ..+.++++|
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G-idip~~~~V 315 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLARG-IDIPTVSMV 315 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGSSS-CCCTTEEEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhcC-CCcccCCEE
Confidence 46799999999999999999999987799999998752 34678999995 44444 346788888
Q ss_pred EEecc
Q 002357 187 IFDEI 191 (931)
Q Consensus 187 ViDEa 191 (931)
|.-..
T Consensus 316 i~~~~ 320 (395)
T 3pey_A 316 VNYDL 320 (395)
T ss_dssp EESSC
T ss_pred EEcCC
Confidence 87443
No 447
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=35.18 E-value=97 Score=33.98 Aligned_cols=84 Identities=17% Similarity=0.171 Sum_probs=55.1
Q ss_pred CCCCcHHHHHHHHHHHH--hCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEec--------cccc-----------CCC
Q 002357 100 TSAGKTAVAEYAIAMAF--RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTG--------DVTL-----------SPN 158 (931)
Q Consensus 100 TGsGKTl~~~l~i~~~l--~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tG--------d~~~-----------~~~ 158 (931)
..++|.....-.+...+ ..+.++||.++++.-+...++.+....-.+..++| +.+. +..
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~ 419 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE 419 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCC
Confidence 44556544333333333 46889999999999999999999988668888998 4432 124
Q ss_pred CCeeEecHHHHHHHHhcCccccCcccEEEEe
Q 002357 159 ASCLVMTTEILRGMLYRGSEVLKEVAWVIFD 189 (931)
Q Consensus 159 ~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViD 189 (931)
..|+|+|. .+..| ..+..+++||+-
T Consensus 420 ~~vLv~T~-----~~~~G-ldl~~~~~Vi~~ 444 (494)
T 1wp9_A 420 FNVLVATS-----VGEEG-LDVPEVDLVVFY 444 (494)
T ss_dssp CSEEEECG-----GGGGG-GGSTTCCEEEES
T ss_pred ceEEEECC-----ccccC-CCchhCCEEEEe
Confidence 67888883 33333 346677777743
No 448
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=35.17 E-value=22 Score=35.32 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=15.7
Q ss_pred cEEEEcCCCCCcHHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~ 111 (931)
.+++.|+.|||||.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLV 20 (223)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999986543
No 449
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=34.86 E-value=30 Score=37.29 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=25.0
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHH--hCCCEEEEEcCc
Q 002357 93 SVLVSAHTSAGKTAVAEYAIAMAF--RDKQRVIYTSPL 128 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l--~~~~rvl~l~P~ 128 (931)
-+++++..|.|||.++.-...... ..|.+|+++..-
T Consensus 20 i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D 57 (354)
T 2woj_A 20 WIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTD 57 (354)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 467789999999987654333333 568888887654
No 450
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=34.84 E-value=27 Score=39.27 Aligned_cols=34 Identities=29% Similarity=0.304 Sum_probs=27.0
Q ss_pred HHHHHHH---hcCCcEEEEcCCCCCcHHHHHHHHHHH
Q 002357 82 RVSVACL---ERNESVLVSAHTSAGKTAVAEYAIAMA 115 (931)
Q Consensus 82 ~~ai~~l---~~g~~vlv~apTGsGKTl~~~l~i~~~ 115 (931)
.++|+.+ -+|+...+.|+.|+|||..++-.|+..
T Consensus 150 ikaID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~ 186 (513)
T 3oaa_A 150 YKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQ 186 (513)
T ss_dssp CHHHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTT
T ss_pred eeeeccccccccCCEEEeecCCCCCcchHHHHHHHhh
Confidence 3678876 689999999999999999865455543
No 451
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=34.75 E-value=38 Score=34.32 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=24.6
Q ss_pred CcEEEEc-CCCCCcHHHHHHHHHHHHhCCCEEEEEcC
Q 002357 92 ESVLVSA-HTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (931)
Q Consensus 92 ~~vlv~a-pTGsGKTl~~~l~i~~~l~~~~rvl~l~P 127 (931)
+.++|.+ .||+|||++...-+....+.|.+|.|.=|
T Consensus 22 k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKP 58 (242)
T 3qxc_A 22 HMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKP 58 (242)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEee
Confidence 4566655 49999999875444444467888888755
No 452
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=34.67 E-value=21 Score=34.21 Aligned_cols=16 Identities=19% Similarity=0.561 Sum_probs=13.9
Q ss_pred cEEEEcCCCCCcHHHH
Q 002357 93 SVLVSAHTSAGKTAVA 108 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~ 108 (931)
.+.+.+|.|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999864
No 453
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=34.57 E-value=18 Score=35.19 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=15.6
Q ss_pred cEEEEcCCCCCcHHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~ 111 (931)
.+.+.+++|||||.++-+.
T Consensus 14 iIgltG~~GSGKSTva~~L 32 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEIL 32 (192)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4678999999999987543
No 454
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=34.46 E-value=24 Score=38.09 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=16.4
Q ss_pred HhcCCc--EEEEcCCCCCcHHHH
Q 002357 88 LERNES--VLVSAHTSAGKTAVA 108 (931)
Q Consensus 88 l~~g~~--vlv~apTGsGKTl~~ 108 (931)
+.+|.| ++.-++||||||...
T Consensus 100 ~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 100 ALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHH
T ss_pred HhCCCCEEEEEeCCCCCCccEEe
Confidence 366765 677999999999763
No 455
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=34.44 E-value=35 Score=33.47 Aligned_cols=36 Identities=19% Similarity=0.156 Sum_probs=23.1
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE--cCchhh
Q 002357 95 LVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT--SPLKAL 131 (931)
Q Consensus 95 lv~apTGsGKTl~~~l~i~~~l~~~~rvl~l--~P~kaL 131 (931)
++....|.|||.++..........| +|+++ =|...+
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~ 42 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSA 42 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCH
Confidence 4578889999987754433333557 88774 355443
No 456
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=34.24 E-value=96 Score=34.85 Aligned_cols=72 Identities=11% Similarity=0.188 Sum_probs=50.9
Q ss_pred HhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCccc
Q 002357 116 FRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVA 184 (931)
Q Consensus 116 l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~ 184 (931)
...+...+++.....-+...++.|.+....+..++|+.+. +...+|+|+|+..+- .| ..+.+++
T Consensus 344 ~~~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~----~G-iDip~v~ 418 (510)
T 2oca_A 344 AQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS----TG-ISVKNLH 418 (510)
T ss_dssp HTTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH----HS-CCCCSEE
T ss_pred HhcCCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh----cc-cccccCc
Confidence 3445555555555777777888888877799999998762 346789999977553 33 3477888
Q ss_pred EEEEeccc
Q 002357 185 WVIFDEIH 192 (931)
Q Consensus 185 ~vViDEaH 192 (931)
+||+....
T Consensus 419 ~vi~~~~~ 426 (510)
T 2oca_A 419 HVVLAHGV 426 (510)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 99876554
No 457
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=34.22 E-value=12 Score=35.75 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=15.1
Q ss_pred cEEEEcCCCCCcHHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~ 111 (931)
.+.+.+++|||||......
T Consensus 4 ~v~IvG~SGsGKSTL~~~L 22 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRM 22 (171)
T ss_dssp EEEEEESCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4678999999999876443
No 458
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=34.20 E-value=20 Score=38.72 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.6
Q ss_pred cCCc--EEEEcCCCCCcHHHH
Q 002357 90 RNES--VLVSAHTSAGKTAVA 108 (931)
Q Consensus 90 ~g~~--vlv~apTGsGKTl~~ 108 (931)
.|.+ ++.-++||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4766 689999999999763
No 459
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=33.96 E-value=26 Score=37.30 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=16.6
Q ss_pred HhcCCc--EEEEcCCCCCcHHHH
Q 002357 88 LERNES--VLVSAHTSAGKTAVA 108 (931)
Q Consensus 88 l~~g~~--vlv~apTGsGKTl~~ 108 (931)
+.+|.| ++.-++||||||...
T Consensus 73 ~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 73 VLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHTTCCEEEEEECSTTSSHHHHH
T ss_pred HhCCCeEEEEEECCCCCCCceEe
Confidence 467765 677999999999864
No 460
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=33.86 E-value=16 Score=38.33 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=14.2
Q ss_pred cEEEEcCCCCCcHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~ 109 (931)
-+.++|++|||||..+-
T Consensus 33 ii~I~G~sGsGKSTla~ 49 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSI 49 (290)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999998753
No 461
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=33.79 E-value=23 Score=39.87 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=27.0
Q ss_pred HHHHHHH---hcCCcEEEEcCCCCCcHHHHHHHHHHH
Q 002357 82 RVSVACL---ERNESVLVSAHTSAGKTAVAEYAIAMA 115 (931)
Q Consensus 82 ~~ai~~l---~~g~~vlv~apTGsGKTl~~~l~i~~~ 115 (931)
.++|+.+ -+|+.+.+.|+.|+|||..++-.|.+.
T Consensus 150 iraID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~ 186 (502)
T 2qe7_A 150 IKAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQ 186 (502)
T ss_dssp CHHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGG
T ss_pred eeecccccccccCCEEEEECCCCCCchHHHHHHHHHh
Confidence 4677776 789999999999999999865455544
No 462
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=33.38 E-value=20 Score=35.65 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
..|+-+.+.+|.|||||...
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 57888999999999999863
No 463
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=33.33 E-value=19 Score=37.45 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=17.4
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
..|+-+.+.+|.|||||...
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLF 51 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 56888999999999999863
No 464
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=33.32 E-value=19 Score=36.64 Aligned_cols=20 Identities=15% Similarity=0.416 Sum_probs=17.6
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
..|+-+.+.+|.|||||...
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLT 52 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 57888999999999999863
No 465
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=33.25 E-value=99 Score=22.52 Aligned_cols=39 Identities=26% Similarity=0.378 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh--hHHHHHHHHHHHHhhcC
Q 002357 712 RKAEVNHEIQQLKSKMRDSQIQ--KFRDELKNRSRVLKKLG 750 (931)
Q Consensus 712 ~~~~l~~~i~~l~~~~~~~~~~--~~~~e~~~~~~vL~~lg 750 (931)
+-..|+.|-..|++++++..+. .+-.|=.+|+.||++|+
T Consensus 11 QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 11 QVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 3445556666666666662111 24467778999999875
No 466
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=33.14 E-value=22 Score=38.70 Aligned_cols=32 Identities=16% Similarity=0.020 Sum_probs=21.4
Q ss_pred CCHHHHHHHHH-------HhcCCc--EEEEcCCCCCcHHHH
Q 002357 77 LDPFQRVSVAC-------LERNES--VLVSAHTSAGKTAVA 108 (931)
Q Consensus 77 l~~~Q~~ai~~-------l~~g~~--vlv~apTGsGKTl~~ 108 (931)
++.-|.+.+.. +.+|.| ++.-++||||||...
T Consensus 93 ~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 93 PGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp TTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred CcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 34446555543 356665 677899999999763
No 467
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=33.10 E-value=19 Score=36.94 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=17.6
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
..|+-+.+.+|.|||||...
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 57888999999999999863
No 468
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=33.01 E-value=49 Score=39.70 Aligned_cols=17 Identities=41% Similarity=0.477 Sum_probs=15.4
Q ss_pred cEEEEcCCCCCcHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~ 109 (931)
++++.+|||+|||.++-
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 69999999999999874
No 469
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=33.00 E-value=1.3e+02 Score=34.13 Aligned_cols=68 Identities=22% Similarity=0.209 Sum_probs=52.0
Q ss_pred hCCCEEEEEcCchhhHHHHHHHHHHhcC---CeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCc
Q 002357 117 RDKQRVIYTSPLKALSNQKYRELHQEFK---DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKE 182 (931)
Q Consensus 117 ~~~~rvl~l~P~kaL~~Q~~~~l~~~~~---~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~ 182 (931)
..+.++||.++++.-+...++.+.+.++ .+..++|+.+. +...+|+|+|. .+.+| ..+.+
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~G-iDip~ 410 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGARG-MDFPN 410 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTSS-CCCTT
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhhcC-CCccc
Confidence 4578999999999999999999998854 68888998753 24678999995 44444 34677
Q ss_pred ccEEEEec
Q 002357 183 VAWVIFDE 190 (931)
Q Consensus 183 l~~vViDE 190 (931)
+++||.-.
T Consensus 411 v~~VI~~~ 418 (563)
T 3i5x_A 411 VHEVLQIG 418 (563)
T ss_dssp CCEEEEES
T ss_pred CCEEEEEC
Confidence 88887543
No 470
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=32.98 E-value=41 Score=32.72 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=25.7
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE-cCchhhHHH
Q 002357 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT-SPLKALSNQ 134 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l-~P~kaL~~Q 134 (931)
+++-|+-|||||....+..-..-..|..++++ -|.-....+
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~ 44 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGE 44 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHH
Confidence 45789999999998755444333556666655 354433333
No 471
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=32.98 E-value=35 Score=35.64 Aligned_cols=36 Identities=17% Similarity=0.066 Sum_probs=24.1
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l 125 (931)
..+.+.|.+.-|.|||.++..........|.+|+++
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 345566778899999987754333333557787776
No 472
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=32.87 E-value=22 Score=38.89 Aligned_cols=32 Identities=31% Similarity=0.206 Sum_probs=22.8
Q ss_pred CCHHHHHHHHH--------HhcCCc--EEEEcCCCCCcHHHH
Q 002357 77 LDPFQRVSVAC--------LERNES--VLVSAHTSAGKTAVA 108 (931)
Q Consensus 77 l~~~Q~~ai~~--------l~~g~~--vlv~apTGsGKTl~~ 108 (931)
++.-|.+.+.. +..|.| ++.-++||||||...
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 45557777653 356765 677999999999763
No 473
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=32.86 E-value=20 Score=36.05 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
..|+-+.+.+|.|||||...
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 57888999999999999863
No 474
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=32.84 E-value=37 Score=34.56 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=21.3
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE
Q 002357 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l 125 (931)
+.|++.-|.|||.++..........|.+|+++
T Consensus 4 I~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 44578889999987654333333567788774
No 475
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=32.80 E-value=1.4e+02 Score=29.85 Aligned_cols=75 Identities=17% Similarity=0.119 Sum_probs=49.1
Q ss_pred CCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHH
Q 002357 329 FQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKE 408 (931)
Q Consensus 329 ~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~ 408 (931)
..++||.++++.-+...+..+.... ......++.++||.....+.
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~-----------------------------------~~~~~~~~~~~g~~~~~~~~ 155 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALG-----------------------------------SSIGVQSAVIVGGIDSMSQS 155 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHH-----------------------------------GGGTCCEEEECTTSCHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHh-----------------------------------ccCCeeEEEEECCCChHHHH
Confidence 4579999999999998887775421 00112367788998765544
Q ss_pred HHHHHHhcCCceEEEecch-----hh--cccCCCCcEEEEe
Q 002357 409 LVELLFQEGLVKALFATET-----FA--MGLNMPAKTVVFT 442 (931)
Q Consensus 409 ~v~~~F~~g~i~vLvaT~~-----la--~GIdip~~~vVI~ 442 (931)
... .+..+|+|+|.- +. .++++..+++||.
T Consensus 156 ~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 156 LAL----AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp HHH----HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred HHh----cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 322 246789999962 22 3567777877664
No 476
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=32.74 E-value=36 Score=33.97 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=20.5
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHhC-CCEEEEE
Q 002357 95 LVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYT 125 (931)
Q Consensus 95 lv~apTGsGKTl~~~l~i~~~l~~-~~rvl~l 125 (931)
+.++.-|.|||.++.......... |.+|+++
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 40 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQEPDIHVLAV 40 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred EECCCCCcchHHHHHHHHHHHHhCcCCCEEEE
Confidence 456678999998775433333344 7888776
No 477
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=32.68 E-value=37 Score=35.52 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=21.7
Q ss_pred CcEEEEcC-CCCCcHHHHHHHHHHHHhCCCEEEEE
Q 002357 92 ESVLVSAH-TSAGKTAVAEYAIAMAFRDKQRVIYT 125 (931)
Q Consensus 92 ~~vlv~ap-TGsGKTl~~~l~i~~~l~~~~rvl~l 125 (931)
+.++|.++ .|.|||.++.-........|.+|+++
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 44556554 68999987654333333568888877
No 478
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=32.68 E-value=34 Score=35.22 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=21.1
Q ss_pred CcEEEEc-CCCCCcHHHHHHHHHHHHhCCCEEEEE
Q 002357 92 ESVLVSA-HTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (931)
Q Consensus 92 ~~vlv~a-pTGsGKTl~~~l~i~~~l~~~~rvl~l 125 (931)
+.++|.+ ..|.|||.++.-........|.+|+++
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 3455554 478999987654333333567788776
No 479
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=32.67 E-value=37 Score=35.13 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=21.1
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE
Q 002357 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l 125 (931)
+.|++..|.|||.++.-........|.+|+++
T Consensus 5 Iavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 5 CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 45578899999987654333333457777764
No 480
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=32.14 E-value=35 Score=36.52 Aligned_cols=36 Identities=19% Similarity=0.176 Sum_probs=21.8
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE
Q 002357 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l 125 (931)
++..+.+.+++|+|||..+..........+.++.++
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~ 90 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI 90 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 456788999999999986533222222234444443
No 481
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=32.09 E-value=17 Score=38.47 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCCcHHHHH
Q 002357 90 RNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~ 109 (931)
.|.-+.+.||+|||||..+-
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~ 108 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTAR 108 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHH
Confidence 45567899999999998753
No 482
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=32.05 E-value=68 Score=34.57 Aligned_cols=65 Identities=14% Similarity=0.052 Sum_probs=50.8
Q ss_pred CCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEE
Q 002357 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (931)
Q Consensus 118 ~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (931)
.+.++|+.++++.-+...++.+......+..++|+.+. +....|+|+|. .+..| ..+.++++|
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~G-idip~~~~V 330 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLTRG-IDIQAVNVV 330 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSSSS-CCCTTEEEE
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccccC-CCccCCCEE
Confidence 56799999999999999999999887788899998752 34678999994 34443 346778887
Q ss_pred EE
Q 002357 187 IF 188 (931)
Q Consensus 187 Vi 188 (931)
|.
T Consensus 331 i~ 332 (400)
T 1s2m_A 331 IN 332 (400)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 483
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=31.98 E-value=21 Score=36.32 Aligned_cols=17 Identities=35% Similarity=0.438 Sum_probs=14.7
Q ss_pred cEEEEcCCCCCcHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~ 109 (931)
.+.+.++.|||||.++-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999764
No 484
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=31.93 E-value=27 Score=37.52 Aligned_cols=32 Identities=19% Similarity=0.053 Sum_probs=21.9
Q ss_pred CCHHHHHHHHH--------HhcCCc--EEEEcCCCCCcHHHH
Q 002357 77 LDPFQRVSVAC--------LERNES--VLVSAHTSAGKTAVA 108 (931)
Q Consensus 77 l~~~Q~~ai~~--------l~~g~~--vlv~apTGsGKTl~~ 108 (931)
++.-|.+.+.. +.+|.| ++.-++||||||...
T Consensus 71 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 71 ATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred CCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 44456665533 356665 577999999999863
No 485
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=31.80 E-value=38 Score=36.43 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=25.8
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHH--hCCCEEEEEcCc
Q 002357 92 ESVLVSAHTSAGKTAVAEYAIAMAF--RDKQRVIYTSPL 128 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l--~~~~rvl~l~P~ 128 (931)
+-+++++.-|.|||.++........ ..|.+|+++.--
T Consensus 19 ~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 4577889999999987754333333 578888777643
No 486
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=31.69 E-value=31 Score=37.96 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=22.1
Q ss_pred CCHHHHHHHH--------HHhcCCc--EEEEcCCCCCcHHHH
Q 002357 77 LDPFQRVSVA--------CLERNES--VLVSAHTSAGKTAVA 108 (931)
Q Consensus 77 l~~~Q~~ai~--------~l~~g~~--vlv~apTGsGKTl~~ 108 (931)
++.-|.+.+. .+..|.| ++.-++||||||...
T Consensus 131 ~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 131 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred cCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 4455666653 3366765 677899999999764
No 487
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=31.65 E-value=24 Score=36.81 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=11.8
Q ss_pred CcEEEEcCCCCCcHHHHH
Q 002357 92 ESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (931)
.-+.++||.|||||.++-
T Consensus 6 ~iIgItG~sGSGKSTva~ 23 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKH 23 (290)
T ss_dssp CEEEEESCC---CCTHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347789999999998764
No 488
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=31.62 E-value=15 Score=38.80 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=17.7
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
..|+.+.+.+|+|||||...
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHH
T ss_pred cCCCEEEEECCCCchHHHHH
Confidence 57889999999999999863
No 489
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=31.61 E-value=19 Score=37.65 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.1
Q ss_pred cEEEEcCCCCCcHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l 110 (931)
-+++.+++|||||.++-.
T Consensus 4 ~I~l~G~~GsGKST~a~~ 21 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWARE 21 (301)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999997643
No 490
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=31.54 E-value=30 Score=36.89 Aligned_cols=25 Identities=24% Similarity=0.196 Sum_probs=18.7
Q ss_pred HHHHHhcCCc--EEEEcCCCCCcHHHH
Q 002357 84 SVACLERNES--VLVSAHTSAGKTAVA 108 (931)
Q Consensus 84 ai~~l~~g~~--vlv~apTGsGKTl~~ 108 (931)
.+..+.+|.| ++.-++||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 3455577776 577999999999763
No 491
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=31.42 E-value=29 Score=37.42 Aligned_cols=32 Identities=19% Similarity=0.098 Sum_probs=21.7
Q ss_pred CCHHHHHHHH--------HHhcCCc--EEEEcCCCCCcHHHH
Q 002357 77 LDPFQRVSVA--------CLERNES--VLVSAHTSAGKTAVA 108 (931)
Q Consensus 77 l~~~Q~~ai~--------~l~~g~~--vlv~apTGsGKTl~~ 108 (931)
++.-|.+.+. .+..|.| ++.-++||||||...
T Consensus 57 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 57 MSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp TTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEe
Confidence 3444665554 3356765 677999999999763
No 492
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=31.42 E-value=27 Score=35.02 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=18.0
Q ss_pred hcCCcEEEEcCCCCCcHHHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l 110 (931)
..+..+.+.++.|||||.++-.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~ 35 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKI 35 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHH
Confidence 4556789999999999998654
No 493
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=31.32 E-value=30 Score=37.18 Aligned_cols=32 Identities=16% Similarity=0.078 Sum_probs=21.8
Q ss_pred CCHHHHHHHH--------HHhcCCc--EEEEcCCCCCcHHHH
Q 002357 77 LDPFQRVSVA--------CLERNES--VLVSAHTSAGKTAVA 108 (931)
Q Consensus 77 l~~~Q~~ai~--------~l~~g~~--vlv~apTGsGKTl~~ 108 (931)
++.-|.+.+. .+.+|.| ++.-++||||||...
T Consensus 66 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 66 QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 4445665543 3466765 577999999999763
No 494
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=31.30 E-value=21 Score=36.78 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
..|+-+.+.+|.|||||...
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLL 54 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 57888999999999999863
No 495
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=31.29 E-value=21 Score=35.70 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=16.8
Q ss_pred hcCCcEEEEcCCCCCcHHH
Q 002357 89 ERNESVLVSAHTSAGKTAV 107 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~ 107 (931)
..|+-+.+.+|.|||||..
T Consensus 28 ~~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp ETTCEEEEEECTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 5678889999999999986
No 496
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=31.18 E-value=20 Score=34.82 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=15.2
Q ss_pred cEEEEcCCCCCcHHHHHH
Q 002357 93 SVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l 110 (931)
.+.+.++.|||||.++-.
T Consensus 4 ~i~i~G~~GsGKst~~~~ 21 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARR 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 577899999999998643
No 497
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=31.16 E-value=31 Score=37.09 Aligned_cols=32 Identities=22% Similarity=0.137 Sum_probs=21.9
Q ss_pred CCHHHHHHHHH--------HhcCCc--EEEEcCCCCCcHHHH
Q 002357 77 LDPFQRVSVAC--------LERNES--VLVSAHTSAGKTAVA 108 (931)
Q Consensus 77 l~~~Q~~ai~~--------l~~g~~--vlv~apTGsGKTl~~ 108 (931)
++.-|.+.+.. +.+|.| ++.-++||||||...
T Consensus 60 ~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 60 EDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred cCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEee
Confidence 44456665533 356765 577899999999763
No 498
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=31.10 E-value=19 Score=36.59 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=17.3
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
..|+-+.+.+|.|||||...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIF 45 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 56788999999999999863
No 499
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=31.03 E-value=22 Score=36.42 Aligned_cols=19 Identities=16% Similarity=0.459 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCCCcHHH
Q 002357 89 ERNESVLVSAHTSAGKTAV 107 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~ 107 (931)
..|+-+.+.+|.|||||..
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred eCCCEEEEECCCCCCHHHH
Confidence 5788899999999999986
No 500
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=30.96 E-value=22 Score=35.95 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=17.3
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002357 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
..|+-+.+.+|.|||||...
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 56888999999999999863
Done!