Your job contains 1 sequence.
>002359
MEESLMAGKRKAPEEDLHVTGTPEEESTKKQRNLTRSCVHEVAVPSGYALTKDEAIHGTF
ANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ
RVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVL
KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQP
CHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGK
ASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEK
DTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVK
ALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICII
MVDEQMEMNTLKDMVLEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASG
EAEVAEYHKLKLDIAQLEKKLMSEITRPERVLYYLGSGRLIKVREGGTDWGWGVVVNVVK
KPSAGVGTLPSRGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFP
QGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEI
QQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELM
FNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLE
VNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAA
QAVGEVNLEKKFAAASESLRRGIMFSNSLYL
The BLAST search returned 8 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002359
(931 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2063648 - symbol:HEN2 "hua enhancer 2" species... 2026 0. 3
ZFIN|ZDB-GENE-040426-2854 - symbol:skiv2l2 "superkiller v... 1478 6.1e-242 3
MGI|MGI:1919448 - symbol:Skiv2l2 "superkiller viralicidic... 1549 1.9e-236 2
UNIPROTKB|P42285 - symbol:SKIV2L2 "Superkiller viralicidi... 1548 3.1e-236 2
UNIPROTKB|E2RCI5 - symbol:SKIV2L2 "Uncharacterized protei... 1548 5.0e-236 2
UNIPROTKB|F5H7E2 - symbol:SKIV2L2 "Superkiller viralicidi... 1543 1.0e-235 2
UNIPROTKB|F1SLL6 - symbol:SKIV2L2 "Uncharacterized protei... 1548 4.4e-235 2
FB|FBgn0001986 - symbol:l(2)35Df "lethal (2) 35Df" specie... 1435 1.9e-234 3
SGD|S000003586 - symbol:MTR4 "ATP-dependent 3'-5' RNA hel... 1425 1.3e-222 3
DICTYBASE|DDB_G0275633 - symbol:DDB_G0275633 "superkiller... 1463 2.1e-222 3
POMBASE|SPAC6F12.16c - symbol:mtr4 "ATP-dependent RNA hel... 1436 2.4e-221 3
UNIPROTKB|F1MAH7 - symbol:F1MAH7 "Uncharacterized protein... 1427 1.4e-216 2
CGD|CAL0003794 - symbol:orf19.1335 species:5476 "Candida ... 1418 2.8e-212 3
TAIR|locus:2026001 - symbol:MTR4 "homolog of yeast MTR4" ... 1424 4.5e-211 2
UNIPROTKB|F1MJX4 - symbol:SKIV2L2 "Uncharacterized protei... 1549 1.4e-205 2
UNIPROTKB|F1N993 - symbol:F1N993 "Uncharacterized protein... 1271 4.3e-204 2
WB|WBGene00012342 - symbol:mtr-4 species:6239 "Caenorhabd... 1276 8.0e-202 3
ASPGD|ASPL0000070749 - symbol:mtr4 species:162425 "Emeric... 1347 1.5e-199 2
UNIPROTKB|G4NH56 - symbol:MGG_03931 "FRQ-interacting RNA ... 1323 1.2e-198 3
POMBASE|SPAC17H9.02 - symbol:SPAC17H9.02 "TRAMP complex A... 1385 2.1e-191 2
GENEDB_PFALCIPARUM|PFF0100w - symbol:PFF0100w "putative A... 1286 1.0e-168 4
UNIPROTKB|D4AE49 - symbol:D4AE49 "Uncharacterized protein... 945 1.0e-165 2
UNIPROTKB|G3MYJ7 - symbol:SKIV2L2 "Uncharacterized protei... 1463 6.9e-150 1
ZFIN|ZDB-GENE-010430-5 - symbol:skiv2l "superkiller viral... 967 6.5e-138 2
UNIPROTKB|E2RSD6 - symbol:SKIV2L "Uncharacterized protein... 945 5.6e-137 3
RGD|1303059 - symbol:Skiv2l "superkiller viralicidic acti... 940 1.5e-136 3
UNIPROTKB|F1LP39 - symbol:Skiv2l "Protein Skiv2l" species... 940 1.5e-136 3
UNIPROTKB|E1BMS0 - symbol:LOC100139548 "Uncharacterized p... 942 8.1e-136 3
UNIPROTKB|B4DM01 - symbol:SKIV2L "cDNA FLJ57529, highly s... 941 1.3e-135 3
UNIPROTKB|F8VNU1 - symbol:SKIV2L "Helicase SKI2W" species... 941 1.3e-135 3
UNIPROTKB|Q15477 - symbol:SKIV2L "Helicase SKI2W" species... 941 1.3e-135 3
UNIPROTKB|F5H7B0 - symbol:SKIV2L "Helicase SKI2W" species... 941 1.3e-135 3
UNIPROTKB|F8VS23 - symbol:SKIV2L "Helicase SKI2W" species... 941 1.3e-135 3
UNIPROTKB|F1RQW4 - symbol:SKIV2L "Uncharacterized protein... 945 5.7e-135 3
DICTYBASE|DDB_G0277211 - symbol:DDB_G0277211 "superkiller... 973 8.8e-135 2
TAIR|locus:2075566 - symbol:AT3G46960 species:3702 "Arabi... 581 9.8e-127 4
POMBASE|SPCC550.03c - symbol:SPCC550.03c "Ski complex RNA... 595 4.6e-123 4
ASPGD|ASPL0000004985 - symbol:AN6007 species:162425 "Emer... 604 3.3e-121 4
CGD|CAL0002171 - symbol:orf19.6425 species:5476 "Candida ... 602 2.8e-120 3
FB|FBgn0039117 - symbol:tst "twister" species:7227 "Droso... 931 1.2e-119 2
SGD|S000004390 - symbol:SKI2 "Ski complex component and p... 574 7.1e-117 4
WB|WBGene00008502 - symbol:skih-2 species:6239 "Caenorhab... 629 1.7e-113 3
RGD|1305984 - symbol:Skiv2l2 "superkiller viralicidic act... 752 1.5e-74 1
UNIPROTKB|F5H6Y7 - symbol:SKIV2L "Helicase SKI2W" species... 381 4.8e-66 3
UNIPROTKB|Q10701 - symbol:helY "Probable helicase HelY" s... 416 7.9e-66 4
TAIR|locus:2020573 - symbol:EMB25 "EMBRYO DEFECTIVE 25" s... 409 1.7e-52 4
POMBASE|SPAC694.02 - symbol:SPAC694.02 "DEAD/DEAH box hel... 216 3.8e-22 2
WB|WBGene00016194 - symbol:C28H8.3 species:6239 "Caenorha... 196 7.2e-20 4
UNIPROTKB|G4N3Z7 - symbol:MGG_05900 "Uncharacterized prot... 186 7.2e-19 2
UNIPROTKB|J9P0M0 - symbol:DDX60 "Uncharacterized protein"... 175 7.5e-17 3
UNIPROTKB|E2QSY2 - symbol:DDX60 "Uncharacterized protein"... 175 7.5e-17 3
UNIPROTKB|Q8IY21 - symbol:DDX60 "Probable ATP-dependent R... 165 3.5e-16 2
DICTYBASE|DDB_G0290389 - symbol:ascc3 "activating signal ... 162 3.8e-16 2
UNIPROTKB|F1P0I1 - symbol:F1P0I1 "Uncharacterized protein... 167 7.8e-16 2
CGD|CAL0001532 - symbol:orf19.3098 species:5476 "Candida ... 146 1.3e-15 3
WB|WBGene00013189 - symbol:Y54E2A.4 species:6239 "Caenorh... 152 2.6e-15 3
GENEDB_PFALCIPARUM|PF14_0370 - symbol:PF14_0370 "RNA heli... 153 2.8e-15 2
UNIPROTKB|Q8IL78 - symbol:PF14_0370 "DEAD/DEAH box helica... 153 2.8e-15 2
RGD|1560014 - symbol:Ddx60 "DEAD (Asp-Glu-Ala-Asp) box po... 159 3.8e-15 6
TAIR|locus:2125677 - symbol:AT4G32700 species:3702 "Arabi... 180 6.1e-15 5
FB|FBgn0038344 - symbol:CG5205 species:7227 "Drosophila m... 157 1.1e-14 2
UNIPROTKB|H7C4L3 - symbol:SKIV2L "Helicase SKI2W" species... 198 1.4e-14 1
UNIPROTKB|Q5H9U9 - symbol:DDX60L "Probable ATP-dependent ... 141 2.3e-14 2
UNIPROTKB|H0YAC4 - symbol:SKIV2L2 "Superkiller viralicidi... 192 6.2e-14 1
UNIPROTKB|G4MUH1 - symbol:MGG_07250 "DEAD/DEAH box helica... 136 3.6e-13 2
RGD|1584010 - symbol:Hfm1 "HFM1, ATP-dependent DNA helica... 135 3.7e-13 2
DICTYBASE|DDB_G0278827 - symbol:DDB_G0278827 "Probable AT... 116 3.8e-13 4
POMBASE|SPBC13G1.10c - symbol:mug81 "ATP-dependent RNA he... 143 6.7e-13 2
SGD|S000000974 - symbol:BRR2 "RNA-dependent ATPase RNA he... 137 1.3e-12 3
UNIPROTKB|E2QVY0 - symbol:ASCC3 "Uncharacterized protein"... 144 3.4e-12 3
MGI|MGI:1925237 - symbol:Ascc3 "activating signal cointeg... 143 3.7e-12 2
UNIPROTKB|F1NTD6 - symbol:ascc3 "Activating signal cointe... 134 3.9e-12 2
UNIPROTKB|Q8N3C0 - symbol:ASCC3 "Activating signal cointe... 140 4.8e-12 2
UNIPROTKB|F6Y2F0 - symbol:ASCC3 "Uncharacterized protein"... 144 5.3e-12 3
WB|WBGene00012896 - symbol:snrp-200 species:6239 "Caenorh... 151 5.8e-12 3
UNIPROTKB|Q9U2G0 - symbol:Y46G5A.4 "Putative U5 small nuc... 151 5.8e-12 3
CGD|CAL0003134 - symbol:orf19.3980 species:5476 "Candida ... 133 1.2e-11 3
WB|WBGene00021905 - symbol:helq-1 species:6239 "Caenorhab... 156 1.3e-11 2
UNIPROTKB|E1BNG3 - symbol:ascc3 "Activating signal cointe... 141 1.4e-11 3
FB|FBgn0002899 - symbol:mus301 "mutagen-sensitive 301" sp... 129 1.8e-11 3
ZFIN|ZDB-GENE-081105-64 - symbol:si:ch211-251j10.5 "si:ch... 150 2.5e-11 2
ASPGD|ASPL0000044033 - symbol:AN2482 species:162425 "Emer... 131 2.8e-11 2
UNIPROTKB|A2PYH4 - symbol:HFM1 "Probable ATP-dependent DN... 127 3.2e-11 3
UNIPROTKB|G4N5J1 - symbol:MGG_06124 "Activating signal co... 151 3.3e-11 3
UNIPROTKB|F1S4E9 - symbol:HFM1 "Uncharacterized protein" ... 129 8.0e-11 3
UNIPROTKB|F1SU44 - symbol:F1SU44 "Uncharacterized protein... 150 9.4e-11 2
SGD|S000003220 - symbol:HFM1 "Meiosis specific DNA helica... 132 1.3e-10 3
RGD|1309795 - symbol:Polq "polymerase (DNA directed), the... 120 1.4e-10 4
UNIPROTKB|D4A628 - symbol:Polq "Polymerase (DNA directed)... 120 1.4e-10 4
UNIPROTKB|F1NYH9 - symbol:HELQ "Uncharacterized protein" ... 144 1.5e-10 2
TAIR|locus:2037375 - symbol:emb1507 "embryo defective 150... 139 2.1e-10 2
UNIPROTKB|F1MFR1 - symbol:HFM1 "Uncharacterized protein" ... 133 2.3e-10 5
ZFIN|ZDB-GENE-061207-43 - symbol:hfm1 "HFM1, ATP-dependen... 126 3.0e-10 3
UNIPROTKB|E1BH78 - symbol:LOC100850262 "Uncharacterized p... 150 3.6e-10 3
RGD|1307995 - symbol:Ascc3 "activating signal cointegrato... 124 3.7e-10 2
SGD|S000003503 - symbol:SLH1 "Putative RNA helicase relat... 137 5.3e-10 3
GENEDB_PFALCIPARUM|PFD1060w - symbol:PFD1060w "u5 small n... 127 5.6e-10 3
UNIPROTKB|Q8IFP1 - symbol:PFD1060w "U5 small nuclear ribo... 127 5.6e-10 3
UNIPROTKB|A6NGI5 - symbol:HFM1 "Probable ATP-dependent DN... 127 1.4e-09 3
TAIR|locus:2059969 - symbol:AT2G42270 species:3702 "Arabi... 121 1.5e-09 2
WARNING: Descriptions of 36 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2063648 [details] [associations]
symbol:HEN2 "hua enhancer 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0010093
"specification of floral organ identity" evidence=IMP] [GO:0016070
"RNA metabolic process" evidence=TAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
[GO:0003002 "regionalization" evidence=RCA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=RCA] [GO:0006396 "RNA
processing" evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0019915 "lipid
storage" evidence=RCA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0035196 "production of
miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045010 "actin nucleation" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0050826
"response to freezing" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0003676 GO:GO:0010093
GO:GO:0016070 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AC005171 GO:GO:0003724 HOGENOM:HOG000163047
KO:K12598 InterPro:IPR025696 Pfam:PF13234 EMBL:BT005794
IPI:IPI00539432 PIR:B84481 RefSeq:NP_565338.1 UniGene:At.20667
ProteinModelPortal:Q9ZVW2 SMR:Q9ZVW2 IntAct:Q9ZVW2 PRIDE:Q9ZVW2
EnsemblPlants:AT2G06990.1 GeneID:815269 KEGG:ath:AT2G06990
TAIR:At2g06990 InParanoid:Q9ZVW2 OMA:TFDRVCD PhylomeDB:Q9ZVW2
ProtClustDB:CLSN2688028 ArrayExpress:Q9ZVW2 Genevestigator:Q9ZVW2
Uniprot:Q9ZVW2
Length = 995
Score = 2026 (718.2 bits), Expect = 0., Sum P(3) = 0.
Identities = 396/499 (79%), Positives = 424/499 (84%)
Query: 1 MEESLMAGKRKAPEED-LHVTGTPEEESTKKQRNLTRSCVHEVAVPSGYALTKDEAIHGT 59
MEE GKRK E L TP E K+R+L R+CVHEVAVP+ Y TK+E IHGT
Sbjct: 5 MEEPETLGKRKESESSKLRSDETPTPEPRTKRRSLKRACVHEVAVPNDYTPTKEETIHGT 64
Query: 60 FANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK 119
NPV+NG+MAKTY F+LDPFQ VSVACLER ES+LVSAHTSAGKTAVAEYAIAMAFRDK
Sbjct: 65 LDNPVFNGDMAKTYPFKLDPFQSVSVACLERKESILVSAHTSAGKTAVAEYAIAMAFRDK 124
Query: 120 QRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEV 179
QRVIYTSPLKALSNQKYREL EFKDVGLMTGDVTLSPNASCLVMTTEILR MLYRGSEV
Sbjct: 125 QRVIYTSPLKALSNQKYRELQHEFKDVGLMTGDVTLSPNASCLVMTTEILRAMLYRGSEV 184
Query: 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQ 239
LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNAT+FAEWIC+LHKQ
Sbjct: 185 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICYLHKQ 244
Query: 240 PCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKI--GGRRE 297
PCHVVYTDFRPTPLQHY FP+GG GLYLVVD+ EQFRED+FVK+QDTF K K G +
Sbjct: 245 PCHVVYTDFRPTPLQHYAFPMGGGGLYLVVDDNEQFREDSFVKMQDTFPKPKSNDGKKSA 304
Query: 298 NXXXXXXXXXXXXXXXXXDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQ 357
N D++KIVKMIMERKF+PVI+FSFSRRECEQHA+SMSKLDFNT
Sbjct: 305 NGKSGGRGAKGGGGPGDSDVYKIVKMIMERKFEPVIIFSFSRRECEQHALSMSKLDFNTD 364
Query: 358 EEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEG 417
EEK+ VEQVF NA+ CLNEEDR+LPAIELMLPLL+RGIAVHHSGLLPVIKELVELLFQEG
Sbjct: 365 EEKEVVEQVFNNAMQCLNEEDRSLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEG 424
Query: 418 LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXI 477
LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMS I
Sbjct: 425 LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGI 484
Query: 478 CIIMVDEQMEMNTLKDMVL 496
CIIM+DEQMEMNTL+DM+L
Sbjct: 485 CIIMIDEQMEMNTLRDMML 503
Score = 1380 (490.8 bits), Expect = 0., Sum P(3) = 0.
Identities = 267/320 (83%), Positives = 302/320 (94%)
Query: 612 RGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKD 671
+G ++VPVQLPLIS LS++R+SVP DLRP++ARQSILLA+QEL SRFP G PKL+PVKD
Sbjct: 676 KGEMHVVPVQLPLISALSRLRISVPSDLRPVEARQSILLALQELSSRFPLGFPKLHPVKD 735
Query: 672 MKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQ 731
M I+D E+VDLV+QIEE+E KL AHP++KS+D+ QI+ FQRKAEVN+EIQQLKSKMRDSQ
Sbjct: 736 MNIQDTEIVDLVSQIEEVEQKLLAHPMHKSEDDQQIKSFQRKAEVNYEIQQLKSKMRDSQ 795
Query: 732 IQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHH 791
+QKFRDELKNRSRVLKKLGHIDADGVVQ+KGRAACLIDTGDELLVTELMFNGTFNDLDHH
Sbjct: 796 LQKFRDELKNRSRVLKKLGHIDADGVVQVKGRAACLIDTGDELLVTELMFNGTFNDLDHH 855
Query: 792 QVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTV 851
QVAALASCFIPVDKS+EQ+NLR EL KPLQQLQ+SARKIAEIQ+ECKLE++V+EYVEST+
Sbjct: 856 QVAALASCFIPVDKSNEQVNLRNELTKPLQQLQDSARKIAEIQHECKLEIDVEEYVESTI 915
Query: 852 RPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKK 911
RPFLMDVIY WSKGA+FAE+IQMTDIFEGSIIRSARRLDEFLNQLRAAA+AVGE +LE K
Sbjct: 916 RPFLMDVIYSWSKGASFAEIIQMTDIFEGSIIRSARRLDEFLNQLRAAAEAVGESSLESK 975
Query: 912 FAAASESLRRGIMFSNSLYL 931
FAAASESLRRGIMF+NSLYL
Sbjct: 976 FAAASESLRRGIMFANSLYL 995
Score = 384 (140.2 bits), Expect = 0., Sum P(3) = 0.
Identities = 80/126 (63%), Positives = 91/126 (72%)
Query: 497 EGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQ 556
EGQFTAEHVI++SFHQFQ+EKALPDIG KVSKLEEEAA L+ASGEAEVAEYH L+ DIA+
Sbjct: 528 EGQFTAEHVIRHSFHQFQHEKALPDIGNKVSKLEEEAAILNASGEAEVAEYHNLQFDIAK 587
Query: 557 LEKKLMSEITRPERVLYYLGSGRLIKVREXXXXXXXXXXXXXXXXXXXXXGTLPSRGGGY 616
EKKLMSEI RPERVL +L +GRL+K+RE G+ S GGGY
Sbjct: 588 HEKKLMSEIIRPERVLCFLDTGRLVKIREGGTDWGWGVVVNVVKNSSVGTGSASSHGGGY 647
Query: 617 IVPVQL 622
IV L
Sbjct: 648 IVDTLL 653
>ZFIN|ZDB-GENE-040426-2854 [details] [associations]
symbol:skiv2l2 "superkiller viralicidic activity
2-like 2" species:7955 "Danio rerio" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0031101 "fin regeneration"
evidence=IMP] [GO:0051781 "positive regulation of cell division"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2854 GO:GO:0005524 GO:GO:0051781 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031101
GO:GO:0008026 eggNOG:COG4581 HOGENOM:HOG000163047 KO:K12598
InterPro:IPR025696 Pfam:PF13234 CTD:23517 HOVERGEN:HBG104255
OrthoDB:EOG4D52WW EMBL:BC061456 IPI:IPI00481753 RefSeq:NP_999933.1
UniGene:Dr.75715 ProteinModelPortal:Q6P7X6 STRING:Q6P7X6
PRIDE:Q6P7X6 GeneID:406795 KEGG:dre:406795 NextBio:20818305
Bgee:Q6P7X6 Uniprot:Q6P7X6
Length = 1034
Score = 1478 (525.3 bits), Expect = 6.1e-242, Sum P(3) = 6.1e-242
Identities = 296/515 (57%), Positives = 372/515 (72%)
Query: 3 ESLMAGKRKAPE----EDLHVTGT-PEEESTKKQRNLTRSCVHEVAVPSGYALTKDEAIH 57
+ ++ GKR+ E E+++++ P+ +S +Q C HEV +P+ T
Sbjct: 60 DEMLLGKRQKLETVSAEEINLSELMPKVKS--EQVETVEGCTHEVVLPANEEYTP----- 112
Query: 58 GTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR 117
P G+ AK Y F LDPFQR ++ C++ N+SVLVSAHTSAGKT AEYAIA+A R
Sbjct: 113 ---LKPRV-GKAAKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALR 168
Query: 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGS 177
+KQRVI+TSP+KALSNQKYRE+++EF+DVGLMTGDVT++P ASCLVMTTEILR MLYRGS
Sbjct: 169 EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS 228
Query: 178 EVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLH 237
EV++EVAWVIFDEIHYM+D ERGVVWEE+II LP + VFLSAT+ NA QFAEWICHLH
Sbjct: 229 EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHHVFLSATVPNARQFAEWICHLH 288
Query: 238 KQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRE 297
KQPCHVVYTD+RPTPLQHY+FP GG GL+LVVDE +FREDNF + G
Sbjct: 289 KQPCHVVYTDYRPTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVL--RDAGDTGG 346
Query: 298 NXXXXXXXXXXXXXXXX-XDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNT 356
N ++FKIVKMIMER FQPVI+FSFS++ECE +A+ +SKLDFNT
Sbjct: 347 NTGAKWDPKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLDFNT 406
Query: 357 QEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQE 416
EEK VE+VF NA DCL++ED+ LP +E +LPLLKRGI +HH GLLP++KE +E+LF E
Sbjct: 407 DEEKKLVEEVFNNATDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSE 466
Query: 417 GLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXX 476
GL+KALFATETFAMG+NMPA+TV+FT+ +K+DG R+I SGEYIQMS
Sbjct: 467 GLLKALFATETFAMGINMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDERG 526
Query: 477 ICIIMVDEQMEMNTLKDMVLEGQFTAEHVIKNSFH 511
I I MVDE+M K + L+G +A+ + ++FH
Sbjct: 527 IVIFMVDEKMSPAVGKQL-LKG--SADP-LNSAFH 557
Score = 742 (266.3 bits), Expect = 6.1e-242, Sum P(3) = 6.1e-242
Identities = 142/321 (44%), Positives = 218/321 (67%)
Query: 612 RGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKD 671
+G +VPV L LI+++S +RL +P DLRP D RQS+L ++QE++ RFP G+P L+P+ D
Sbjct: 715 KGEMQVVPVILHLITSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGIPLLDPIDD 774
Query: 672 MKIEDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDS 730
M I+DP + ++ ++E EH+++ HPL+ + E + ++KA + +I+ K +++ +
Sbjct: 775 MGIKDPALKKVIQKVEAFEHRMYTHPLHSDPNLEAVYKLCEKKALIAGDIKAAKRELKKA 834
Query: 731 QIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH 790
+ DELK R RVL++LG + V+++KGR AC +GDELL+TE+MFNG FNDL
Sbjct: 835 RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACETSSGDELLLTEMMFNGLFNDLTA 894
Query: 791 HQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVEST 850
Q AL SCF+ + ++E L +L PL+Q+QE A++IA++ E KLEV+ D Y+
Sbjct: 895 EQATALLSCFVFQENANEMPKLTEQLGGPLRQMQECAKRIAKVSAEAKLEVDEDSYLNQ- 953
Query: 851 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEK 910
RP LMDV+Y W+ G++F+++ +MTD+FEGSIIR RRL+E L Q+ AA+A+G LE
Sbjct: 954 FRPHLMDVVYTWANGSSFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELEN 1013
Query: 911 KFAAASESLRRGIMFSNSLYL 931
KFA ++R I+F+ SLYL
Sbjct: 1014 KFATGITKIKRDIVFAASLYL 1034
Score = 152 (58.6 bits), Expect = 6.1e-242, Sum P(3) = 6.1e-242
Identities = 30/97 (30%), Positives = 60/97 (61%)
Query: 489 NTLKDMVLEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYH 548
N + +++ + E++++ SF+QFQ+ +A+P + ++ KLEEE ++ E V Y+
Sbjct: 561 NMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVDRMKKLEEEYNAIRIPKEESVVTYY 620
Query: 549 KLKLDIAQLEKKLMSEITRPERVLYYLGSGRLIKVRE 585
K++ +A+L K++ I +P L +L GRL+KV++
Sbjct: 621 KIRQQLAKLGKEIEEFIHKPRYCLPFLQPGRLVKVKK 657
>MGI|MGI:1919448 [details] [associations]
symbol:Skiv2l2 "superkiller viralicidic activity 2-like 2
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000460 "maturation of 5.8S
rRNA" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919448 GO:GO:0005524
GO:GO:0005730 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026 eggNOG:COG4581
GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047 KO:K12598
OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 CTD:23517
HOVERGEN:HBG104255 OrthoDB:EOG4D52WW ChiTaRS:SKIV2L2 EMBL:AK012158
EMBL:BC029230 IPI:IPI00113134 RefSeq:NP_082427.1 UniGene:Mm.291029
ProteinModelPortal:Q9CZU3 SMR:Q9CZU3 IntAct:Q9CZU3 STRING:Q9CZU3
PhosphoSite:Q9CZU3 PaxDb:Q9CZU3 PRIDE:Q9CZU3
Ensembl:ENSMUST00000022281 GeneID:72198 KEGG:mmu:72198
UCSC:uc007rws.1 InParanoid:Q9CZU3 NextBio:335677 Bgee:Q9CZU3
Genevestigator:Q9CZU3 GermOnline:ENSMUSG00000016018 Uniprot:Q9CZU3
Length = 1040
Score = 1549 (550.3 bits), Expect = 1.9e-236, Sum P(2) = 1.9e-236
Identities = 312/569 (54%), Positives = 400/569 (70%)
Query: 38 CVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVS 97
C HEVA+P+ ++ I P G+ AK Y F LD FQR ++ C++ N+SVLVS
Sbjct: 108 CTHEVALPAD-----EDYIP---LKPRV-GKAAKEYPFILDAFQREAIQCVDNNQSVLVS 158
Query: 98 AHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSP 157
AHTSAGKT AEYAIA+A R+KQRVI+TSP+KALSNQKYRE+++EF+DVGLMTGDVT++P
Sbjct: 159 AHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINP 218
Query: 158 NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMV 217
ASCLVMTTEILR MLYRGSEV++EVAWVIFDEIHYM+D ERGVVWEE+II LP + V
Sbjct: 219 TASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYV 278
Query: 218 FLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFRE 277
FLSAT+ NA QFAEWICHLHKQPCHV+YTD+RPTPLQHY+FP GG GL+LVVDE FRE
Sbjct: 279 FLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFRE 338
Query: 278 DNFVKLQDTFLKQKIGGRRENXXXXXXXXXXXXXXXXXDIFKIVKMIMERKFQPVIVFSF 337
DNF + G + ++FKIVKMIMER FQPVI+FSF
Sbjct: 339 DNFNTAMQVL--RDAG----DLAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSF 392
Query: 338 SRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAV 397
S+++CE +A+ M+KLDFNT EEK VE+VF NA+DCL++ED+ LP +E +LPLLKRGI +
Sbjct: 393 SKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGI 452
Query: 398 HHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGS 457
HH GLLP++KE +E+LF EGL+KALFATETFAMG+NMPA+TV+FT +K+DG R+I S
Sbjct: 453 HHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKYDGKDFRWISS 512
Query: 458 GEYIQMSXXXXXXXXXXXXICIIMVDEQME----MNTLK--------------DMVLE-- 497
GEYIQMS I I+MVDE+M LK +MVL
Sbjct: 513 GEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLL 572
Query: 498 --GQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIA 555
+ E++++ SF+QFQ+ +A+P + +KV EE+ + E V Y+K++ +A
Sbjct: 573 RVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEEQYNKIVIPNEENVVIYYKIRQQLA 632
Query: 556 QLEKKLMSEITRPERVLYYLGSGRLIKVR 584
+L K++ I +P+ L +L GRL+KV+
Sbjct: 633 KLGKEIEEYIHKPKYCLPFLQPGRLVKVK 661
Score = 754 (270.5 bits), Expect = 1.9e-236, Sum P(2) = 1.9e-236
Identities = 145/321 (45%), Positives = 220/321 (68%)
Query: 612 RGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKD 671
+G +VPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ D
Sbjct: 721 KGEMQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQRRFPDGVPLLDPIDD 780
Query: 672 MKIEDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDS 730
M I+D + ++ ++E EH++++HPL+ + E +RKA++ +I+ K +++ +
Sbjct: 781 MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCERKAQIALDIKSAKRELKKA 840
Query: 731 QIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH 790
+ DELK R RVL++LG + V+++KGR AC I + DELL+TE+MFNG FNDL
Sbjct: 841 RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSS 900
Query: 791 HQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVEST 850
Q AL SCF+ + SSE L +LA PL+Q+QE A++IA++ E KLE++ + Y+ S+
Sbjct: 901 EQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYL-SS 959
Query: 851 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEK 910
+P LMDV+Y W+ GATFA + +MTD+FEGSIIR RRL+E L Q+ AA+A+G LE
Sbjct: 960 FKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELEN 1019
Query: 911 KFAAASESLRRGIMFSNSLYL 931
KFA ++R I+F+ SLYL
Sbjct: 1020 KFAEGITKIKRDIVFAASLYL 1040
Score = 41 (19.5 bits), Expect = 4.1e-77, Sum P(2) = 4.1e-77
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTA 106
K S ELDP V V ES+ SA T A K A
Sbjct: 682 KPNSGELDPLYVVEVLLRCSKESLKNSA-TEAAKPA 716
>UNIPROTKB|P42285 [details] [associations]
symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0000460 "maturation of 5.8S rRNA" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000460 GO:GO:0008026 eggNOG:COG4581 HOGENOM:HOG000163047
KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:D29641
EMBL:BX640789 EMBL:BC014669 EMBL:BC028604 EMBL:BC031779
EMBL:BC065258 EMBL:BC104996 EMBL:BC113509 IPI:IPI00647217
RefSeq:NP_056175.3 UniGene:Hs.274531 ProteinModelPortal:P42285
SMR:P42285 IntAct:P42285 STRING:P42285 PhosphoSite:P42285
DMDM:71153172 SWISS-2DPAGE:P42285 PaxDb:P42285 PeptideAtlas:P42285
PRIDE:P42285 DNASU:23517 Ensembl:ENST00000230640 GeneID:23517
KEGG:hsa:23517 UCSC:uc003jpy.4 CTD:23517 GeneCards:GC05P054605
HGNC:HGNC:18734 HPA:HPA037379 neXtProt:NX_P42285
PharmGKB:PA134901921 HOVERGEN:HBG104255 InParanoid:P42285
OrthoDB:EOG4D52WW PhylomeDB:P42285 ChiTaRS:SKIV2L2 GenomeRNAi:23517
NextBio:45957 ArrayExpress:P42285 Bgee:P42285 CleanEx:HS_SKIV2L2
Genevestigator:P42285 GermOnline:ENSG00000039123 Uniprot:P42285
Length = 1042
Score = 1548 (550.0 bits), Expect = 3.1e-236, Sum P(2) = 3.1e-236
Identities = 311/569 (54%), Positives = 401/569 (70%)
Query: 38 CVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVS 97
C HEVA+P+ +++ + P G+ AK Y F LD FQR ++ C++ N+SVLVS
Sbjct: 110 CTHEVALPA-----EEDYLP---LKPRV-GKAAKEYPFILDAFQREAIQCVDNNQSVLVS 160
Query: 98 AHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSP 157
AHTSAGKT AEYAIA+A R+KQRVI+TSP+KALSNQKYRE+++EF+DVGLMTGDVT++P
Sbjct: 161 AHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINP 220
Query: 158 NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMV 217
ASCLVMTTEILR MLYRGSEV++EVAWVIFDEIHYM+D ERGVVWEE+II LP + V
Sbjct: 221 TASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYV 280
Query: 218 FLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFRE 277
FLSAT+ NA QFAEWICHLHKQPCHV+YTD+RPTPLQHY+FP GG GL+LVVDE FRE
Sbjct: 281 FLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFRE 340
Query: 278 DNFVKLQDTFLKQKIGGRRENXXXXXXXXXXXXXXXXXDIFKIVKMIMERKFQPVIVFSF 337
DNF + G + ++FKIVKMIMER FQPVI+FSF
Sbjct: 341 DNFNTAMQVL--RDAG----DLAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSF 394
Query: 338 SRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAV 397
S+++CE +A+ M+KLDFNT EEK VE+VF NA+DCL++ED+ LP +E +LPLLKRGI +
Sbjct: 395 SKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGI 454
Query: 398 HHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGS 457
HH GLLP++KE +E+LF EGL+KALFATETFAMG+NMPA+TV+FT +K+DG R+I S
Sbjct: 455 HHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISS 514
Query: 458 GEYIQMSXXXXXXXXXXXXICIIMVDEQME----MNTLK--------------DMVLE-- 497
GEYIQMS I I+MVDE+M LK +MVL
Sbjct: 515 GEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLL 574
Query: 498 --GQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIA 555
+ E++++ SF+QFQ+ +A+P + +KV EE+ + E V Y+K++ +A
Sbjct: 575 RVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLA 634
Query: 556 QLEKKLMSEITRPERVLYYLGSGRLIKVR 584
+L K++ I +P+ L +L GRL+KV+
Sbjct: 635 KLGKEIEEYIHKPKYCLPFLQPGRLVKVK 663
Score = 753 (270.1 bits), Expect = 3.1e-236, Sum P(2) = 3.1e-236
Identities = 144/321 (44%), Positives = 220/321 (68%)
Query: 612 RGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKD 671
+G +VPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ D
Sbjct: 723 KGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGIPLLDPIDD 782
Query: 672 MKIEDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDS 730
M I+D + ++ ++E EH++++HPL+ + E ++KA++ +I+ K +++ +
Sbjct: 783 MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKA 842
Query: 731 QIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH 790
+ DELK R RVL++LG + V+++KGR AC I + DELL+TE+MFNG FNDL
Sbjct: 843 RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSA 902
Query: 791 HQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVEST 850
Q AL SCF+ + SSE L +LA PL+Q+QE A++IA++ E KLE++ + Y+ S+
Sbjct: 903 EQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYL-SS 961
Query: 851 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEK 910
+P LMDV+Y W+ GATFA + +MTD+FEGSIIR RRL+E L Q+ AA+A+G LE
Sbjct: 962 FKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELEN 1021
Query: 911 KFAAASESLRRGIMFSNSLYL 931
KFA ++R I+F+ SLYL
Sbjct: 1022 KFAEGITKIKRDIVFAASLYL 1042
Score = 41 (19.5 bits), Expect = 5.2e-77, Sum P(2) = 5.2e-77
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTA 106
K S ELDP V V ES+ SA T A K A
Sbjct: 684 KPNSGELDPLYVVEVLLRCSKESLKNSA-TEAAKPA 718
>UNIPROTKB|E2RCI5 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102230 KO:K12598 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 CTD:23517 EMBL:AAEX03001437
RefSeq:XP_849676.1 Ensembl:ENSCAFT00000010985 GeneID:607950
KEGG:cfa:607950 Uniprot:E2RCI5
Length = 1042
Score = 1548 (550.0 bits), Expect = 5.0e-236, Sum P(2) = 5.0e-236
Identities = 318/608 (52%), Positives = 411/608 (67%)
Query: 2 EESLMAGKRKAPE---EDLHVTGTPEEESTKKQRNLTRSCVHEVAVPSGYALTKDEAIHG 58
+E + K + E EDL + + + C HEVA+P+ DE
Sbjct: 72 DEPIFGKKPRVEESITEDLSLADLMPRVKVQSVETV-EGCTHEVALPA------DEDYLP 124
Query: 59 TFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD 118
P G+ AK Y F LD FQR ++ C++ N+SVLVSAHTSAGKT AEYAIA+A R+
Sbjct: 125 L--KPRV-GKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALRE 181
Query: 119 KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSE 178
KQRVI+TSP+KALSNQKYRE+++EF+DVGLMTGDVT++P ASCLVMTTEILR MLYRGSE
Sbjct: 182 KQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSE 241
Query: 179 VLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHK 238
V++EVAWVIFDEIHYM+D ERGVVWEE+II LP + VFLSAT+ NA QFAEWICHLHK
Sbjct: 242 VMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHK 301
Query: 239 QPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRREN 298
QPCHV+YTD+RPTPLQHY+FP GG GL+LVVDE FREDNF + G +
Sbjct: 302 QPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVL--RDAG----D 355
Query: 299 XXXXXXXXXXXXXXXXXDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQE 358
++FKIVKMIMER FQPVI+FSFS+++CE +A+ M+KLDFNT E
Sbjct: 356 LAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDE 415
Query: 359 EKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGL 418
EK VE+VF NA+DCL++ED+ LP +E +LPLLKRGI +HH GLLP++KE +E+LF EGL
Sbjct: 416 EKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGL 475
Query: 419 VKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXIC 478
+KALFATETFAMG+NMPA+TV+FT +K+DG R+I SGEYIQMS I
Sbjct: 476 IKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIV 535
Query: 479 IIMVDEQME----MNTLK--------------DMVLE----GQFTAEHVIKNSFHQFQYE 516
I+MVDE+M LK +MVL + E++++ SF+QFQ+
Sbjct: 536 ILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHY 595
Query: 517 KALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLMSEITRPERVLYYLG 576
+A+P + +KV EE+ + E V Y+K++ +A+L K++ + +P+ L +L
Sbjct: 596 RAIPGVVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYVHKPKYCLPFLQ 655
Query: 577 SGRLIKVR 584
GRL+KV+
Sbjct: 656 PGRLVKVK 663
Score = 751 (269.4 bits), Expect = 5.0e-236, Sum P(2) = 5.0e-236
Identities = 144/321 (44%), Positives = 219/321 (68%)
Query: 612 RGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKD 671
+G +VPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ D
Sbjct: 723 KGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPIDD 782
Query: 672 MKIEDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDS 730
M I+D + ++ ++E EH++++HPL+ + E ++KA++ +I+ K +++ +
Sbjct: 783 MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKA 842
Query: 731 QIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH 790
+ DELK R RVL++LG + V+++KGR AC I + DELL+TE+MFNG FNDL
Sbjct: 843 RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSA 902
Query: 791 HQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVEST 850
Q AL SCF+ + SSE L +LA PL+Q+QE A++IA++ E KLE++ + Y+ S
Sbjct: 903 EQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLNS- 961
Query: 851 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEK 910
+P LMDV+Y W+ GATFA + +MTD+FEGSIIR RRL+E L Q+ AA+A+G LE
Sbjct: 962 FKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELEN 1021
Query: 911 KFAAASESLRRGIMFSNSLYL 931
KFA ++R I+F+ SLYL
Sbjct: 1022 KFAEGITKIKRDIVFAASLYL 1042
Score = 41 (19.5 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTA 106
K S ELDP V V ES+ SA T A K A
Sbjct: 684 KPNSGELDPLYVVEVLLRCSKESLKNSA-TEAAKPA 718
>UNIPROTKB|F5H7E2 [details] [associations]
symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:18734 ChiTaRS:SKIV2L2 EMBL:AC010480
EMBL:AC020728 IPI:IPI01011073 ProteinModelPortal:F5H7E2 SMR:F5H7E2
Ensembl:ENST00000545714 UCSC:uc011cqi.2 ArrayExpress:F5H7E2
Bgee:F5H7E2 Uniprot:F5H7E2
Length = 941
Score = 1543 (548.2 bits), Expect = 1.0e-235, Sum P(2) = 1.0e-235
Identities = 304/540 (56%), Positives = 388/540 (71%)
Query: 67 GEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126
G+ AK Y F LD FQR ++ C++ N+SVLVSAHTSAGKT AEYAIA+A R+KQRVI+TS
Sbjct: 29 GKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTS 88
Query: 127 PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186
P+KALSNQKYRE+++EF+DVGLMTGDVT++P ASCLVMTTEILR MLYRGSEV++EVAWV
Sbjct: 89 PIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWV 148
Query: 187 IFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYT 246
IFDEIHYM+D ERGVVWEE+II LP + VFLSAT+ NA QFAEWICHLHKQPCHV+YT
Sbjct: 149 IFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYT 208
Query: 247 DFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENXXXXXXXX 306
D+RPTPLQHY+FP GG GL+LVVDE FREDNF + G +
Sbjct: 209 DYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVL--RDAG----DLAKGDQKG 262
Query: 307 XXXXXXXXXDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQV 366
++FKIVKMIMER FQPVI+FSFS+++CE +A+ M+KLDFNT EEK VE+V
Sbjct: 263 RKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEV 322
Query: 367 FQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATE 426
F NA+DCL++ED+ LP +E +LPLLKRGI +HH GLLP++KE +E+LF EGL+KALFATE
Sbjct: 323 FSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATE 382
Query: 427 TFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQM 486
TFAMG+NMPA+TV+FT +K+DG R+I SGEYIQMS I I+MVDE+M
Sbjct: 383 TFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKM 442
Query: 487 E----MNTLK--------------DMVLE----GQFTAEHVIKNSFHQFQYEKALPDIGK 524
LK +MVL + E++++ SF+QFQ+ +A+P + +
Sbjct: 443 SPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVE 502
Query: 525 KVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLMSEITRPERVLYYLGSGRLIKVR 584
KV EE+ + E V Y+K++ +A+L K++ I +P+ L +L GRL+KV+
Sbjct: 503 KVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVK 562
Score = 753 (270.1 bits), Expect = 1.0e-235, Sum P(2) = 1.0e-235
Identities = 144/321 (44%), Positives = 220/321 (68%)
Query: 612 RGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKD 671
+G +VPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ D
Sbjct: 622 KGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGIPLLDPIDD 681
Query: 672 MKIEDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDS 730
M I+D + ++ ++E EH++++HPL+ + E ++KA++ +I+ K +++ +
Sbjct: 682 MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKA 741
Query: 731 QIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH 790
+ DELK R RVL++LG + V+++KGR AC I + DELL+TE+MFNG FNDL
Sbjct: 742 RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSA 801
Query: 791 HQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVEST 850
Q AL SCF+ + SSE L +LA PL+Q+QE A++IA++ E KLE++ + Y+ S+
Sbjct: 802 EQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYL-SS 860
Query: 851 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEK 910
+P LMDV+Y W+ GATFA + +MTD+FEGSIIR RRL+E L Q+ AA+A+G LE
Sbjct: 861 FKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELEN 920
Query: 911 KFAAASESLRRGIMFSNSLYL 931
KFA ++R I+F+ SLYL
Sbjct: 921 KFAEGITKIKRDIVFAASLYL 941
Score = 41 (19.5 bits), Expect = 5.2e-77, Sum P(2) = 5.2e-77
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTA 106
K S ELDP V V ES+ SA T A K A
Sbjct: 583 KPNSGELDPLYVVEVLLRCSKESLKNSA-TEAAKPA 617
>UNIPROTKB|F1SLL6 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026
GeneTree:ENSGT00690000102230 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:FP236391 EMBL:CU929534 Ensembl:ENSSSCT00000018417
Uniprot:F1SLL6
Length = 1046
Score = 1548 (550.0 bits), Expect = 4.4e-235, Sum P(2) = 4.4e-235
Identities = 313/569 (55%), Positives = 399/569 (70%)
Query: 38 CVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVS 97
C HEVA+P+ DE P G+ AK Y F LD FQR ++ C++ N+SVLVS
Sbjct: 111 CTHEVALPA------DEDYLPL--KPRV-GKAAKEYPFILDAFQREAIQCVDNNQSVLVS 161
Query: 98 AHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSP 157
AHTSAGKT AEYAIA+A R+KQRVI+TSP+KALSNQKYRE+++EF+DVGLMTGDVT++P
Sbjct: 162 AHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINP 221
Query: 158 NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMV 217
ASCLVMTTEILR MLYRGSEV++EVAWVIFDEIHYM+D ERGVVWEE+II LP + V
Sbjct: 222 TASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYV 281
Query: 218 FLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFRE 277
FLSAT+ NA QFAEWICHLHKQPCHV+YTD+RPTPLQHY+FP GG GL+LVVDE FRE
Sbjct: 282 FLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFRE 341
Query: 278 DNFVKLQDTFLKQKIGGRRENXXXXXXXXXXXXXXXXXDIFKIVKMIMERKFQPVIVFSF 337
DNF + G + ++FKIVKMIMER FQPVI+FSF
Sbjct: 342 DNFNTAMQVL--RDAG----DLAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSF 395
Query: 338 SRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAV 397
S+++CE +A+ M+KLDFNT EEK VE+VF NA+DCL++ED+ LP +E +LPLLKRGI +
Sbjct: 396 SKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGI 455
Query: 398 HHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGS 457
HH GLLP++KE +E+LF EGL+KALFATETFAMG+NMPA+TV+FT +K+DG R+I S
Sbjct: 456 HHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISS 515
Query: 458 GEYIQMSXXXXXXXXXXXXICIIMVDEQME----MNTLK--------------DMVLE-- 497
GEYIQMS I I+MVDE+M LK +MVL
Sbjct: 516 GEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLL 575
Query: 498 --GQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIA 555
+ E++++ SF+QFQ+ +A+P + +KV EE+ + E V Y+K++ +A
Sbjct: 576 RVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLA 635
Query: 556 QLEKKLMSEITRPERVLYYLGSGRLIKVR 584
+L K++ I +P+ L +L GRL+KV+
Sbjct: 636 KLGKEIEEYIHKPKYCLPFLQPGRLVKVK 664
Score = 742 (266.3 bits), Expect = 4.4e-235, Sum P(2) = 4.4e-235
Identities = 145/324 (44%), Positives = 220/324 (67%)
Query: 612 RGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKD 671
+G +VPV + L+S +S +RL +P DLRPLD RQS+L ++QE++ RFP G+P L+P+ D
Sbjct: 724 KGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDD 783
Query: 672 MKIEDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDS 730
M I+D + ++ ++E EH++++HPL+ + E ++KA++ +I+ K +++ +
Sbjct: 784 MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKA 843
Query: 731 QIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLID---TGDELLVTELMFNGTFND 787
+ DELK R RVL++LG + V+++KGR AC I + DELL+TE+MFNG FND
Sbjct: 844 RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISRWYSADELLLTEMMFNGLFND 903
Query: 788 LDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYV 847
L Q AL SCF+ + SSE L +LA PL+Q+QE A++IA++ E KLE++ + Y+
Sbjct: 904 LSAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYL 963
Query: 848 ESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVN 907
S+ +P LMDV+Y W+ GATFA + +MTD+FEGSIIR RRL+E L Q+ AA+A+G
Sbjct: 964 -SSFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTE 1022
Query: 908 LEKKFAAASESLRRGIMFSNSLYL 931
LE KFA ++R I+F+ SLYL
Sbjct: 1023 LENKFAEGITKIKRDIVFAASLYL 1046
Score = 41 (19.5 bits), Expect = 1.1e-75, Sum P(2) = 1.1e-75
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTA 106
K S ELDP V V ES+ SA T A K A
Sbjct: 685 KPNSGELDPLYVVEVLLRCSKESLKNSA-TEAAKPA 719
>FB|FBgn0001986 [details] [associations]
symbol:l(2)35Df "lethal (2) 35Df" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0071013 "catalytic step
2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014134 GO:GO:0022008 GO:GO:0003676 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG4581 GeneTree:ENSGT00690000102230 KO:K12598
OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:AF145638
RefSeq:NP_524929.1 UniGene:Dm.1748 SMR:Q9Y134 MINT:MINT-942655
STRING:Q9Y134 EnsemblMetazoa:FBtr0080760 GeneID:48782
KEGG:dme:Dmel_CG4152 UCSC:CG4152-RA FlyBase:FBgn0001986
InParanoid:Q9Y134 OrthoDB:EOG4K3JB5 GenomeRNAi:48782 NextBio:839548
Uniprot:Q9Y134
Length = 1055
Score = 1435 (510.2 bits), Expect = 1.9e-234, Sum P(3) = 1.9e-234
Identities = 278/476 (58%), Positives = 353/476 (74%)
Query: 36 RSCVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVL 95
+SC HEVA A E I P ++G AK Y F LDPFQR ++ C++ ++SVL
Sbjct: 120 KSCTHEVA-----AHPDQEYIP---LKP-FSGVPAKEYPFVLDPFQRQAILCIDNSQSVL 170
Query: 96 VSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL 155
VSAHTSAGKT VAEYAIA + KQRVIYT+P+KALSNQK+RE EFKDVGL+TGDVT+
Sbjct: 171 VSAHTSAGKTVVAEYAIAKSLAAKQRVIYTTPIKALSNQKFREFTDEFKDVGLVTGDVTI 230
Query: 156 SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIK 215
+P+ASCL+MTTEILR MLYRGSE+++EV WV+FDEIHYM+D+ERGVVWEE++I LP ++
Sbjct: 231 NPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHYMRDKERGVVWEETLILLPDNVR 290
Query: 216 MVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQF 275
VFLSAT+ NA QFAEW+CHLHKQPCHVVYTD+RPTPLQHY+FP GG G++L+VDEK QF
Sbjct: 291 YVFLSATIPNARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQF 350
Query: 276 REDNFVKLQDTFLKQKIGGRRENXXXXXXXXXXXXXXXXXDIFKIVKMIMERKFQPVIVF 335
+EDNF G+ + +IFKIVKMIMER F PVI+F
Sbjct: 351 KEDNFTTAMAVLANAGEAGKGDQKGRHGGIKGTNAGQT--NIFKIVKMIMERNFAPVIIF 408
Query: 336 SFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGI 395
SFS+++CE +AM M+KLDFNT +EK V++VF NA+D L EEDR LP +E +LPLL+RGI
Sbjct: 409 SFSKKDCEIYAMQMAKLDFNTPDEKKLVDEVFNNAMDVLTEEDRRLPQVENVLPLLRRGI 468
Query: 396 AVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYI 455
+HH GLLP++KE +E+LF EGL+KALFATETFAMGLNMPA+TV+FTA +K+DG R+I
Sbjct: 469 GIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGKKFRWI 528
Query: 456 GSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTLKDMVLEGQFTAEHVIKNSFH 511
SGEYIQM+ I I+M+DE++ +D+V +G+ A+ I ++FH
Sbjct: 529 SSGEYIQMAGRAGRRGLDDKGIVILMIDEKVSPAVGRDIV-QGK--ADP-INSAFH 580
Score = 730 (262.0 bits), Expect = 1.9e-234, Sum P(3) = 1.9e-234
Identities = 146/321 (45%), Positives = 214/321 (66%)
Query: 612 RGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKD 671
RG +VPV LI+ +S IR+ P DLR D R+++L +QE + RFP G P LNP+ D
Sbjct: 736 RGCMEVVPVAHTLITQISSIRVYFPNDLRSADNRRAVLKTIQEAKKRFPLGPPVLNPIDD 795
Query: 672 MKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQI-RCFQRKAEVNHEIQQLKSKMRDS 730
M I+D E D+VN I + E +L HPL+KS + +I R +Q K + ++Q LK++++ +
Sbjct: 796 MNIKDREFRDIVNTISQFEKRLEEHPLHKSPELERIHRRYQDKVTLQKQLQDLKAELKAA 855
Query: 731 QIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH 790
+ DELK+R RVL+++G+ V++ KGR AC + + DELL+TE++FNG FNDL
Sbjct: 856 RSLLQMDELKHRKRVLRRMGYCKPGDVIEFKGRVACELSSADELLMTEMIFNGVFNDLTA 915
Query: 791 HQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVEST 850
Q AL SCF+ +KSSE + EL+ PL+ +Q+ AR+IA++ ECKL+++ D YV+
Sbjct: 916 PQAVALLSCFVCDEKSSESVKSATELSGPLRSMQDLARRIAKVSTECKLDLDADTYVDK- 974
Query: 851 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEK 910
+PFLMDV+ W KG++F V +MTDIFEGSIIR RRL+E L Q+ A++ +G +LE
Sbjct: 975 FKPFLMDVVLAWCKGSSFLAVCKMTDIFEGSIIRCMRRLEELLRQMCQASKTIGNTDLEN 1034
Query: 911 KFAAASESLRRGIMFSNSLYL 931
KF+ L+R I+F+ SLYL
Sbjct: 1035 KFSEGIRLLKRDIVFAASLYL 1055
Score = 136 (52.9 bits), Expect = 1.9e-234, Sum P(3) = 1.9e-234
Identities = 29/95 (30%), Positives = 53/95 (55%)
Query: 489 NTLKDMVLEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYH 548
N + +++ + E++++ SF+QFQ + ALP + +V + E L E +A YH
Sbjct: 584 NMVLNLLRVEEINPEYMLERSFYQFQNQAALPGLHDQVEQKTLELNKLTIKDEHNIASYH 643
Query: 549 KLKLDIAQLEKKLMSEITRPERVLYYLGSGRLIKV 583
++ + Q K+ IT+P+ +L +L GRL+KV
Sbjct: 644 HIRSQLDQHGKQFRQWITKPQYLLPFLQPGRLVKV 678
>SGD|S000003586 [details] [associations]
symbol:MTR4 "ATP-dependent 3'-5' RNA helicase of the DExD/H
family" species:4932 "Saccharomyces cerevisiae" [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IMP] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IMP] [GO:0043629
"ncRNA polyadenylation" evidence=IDA] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IGI;IDA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IMP] [GO:0071031 "nuclear mRNA surveillance of
mRNA 3'-end processing" evidence=IGI;IMP] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0031499 "TRAMP complex" evidence=IDA;IPI] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034459 "ATP-dependent 3'-5' RNA
helicase activity" evidence=IMP;IDA] [GO:0034476 "U5 snRNA 3'-end
processing" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0071049
"nuclear retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IGI] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011254 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
SGD:S000003586 GO:GO:0005524 GO:GO:0005730 EMBL:BK006943
GO:GO:0016491 GO:GO:0031499 GO:GO:0043629 GO:GO:0071035
GO:GO:0071038 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
SUPFAM:SSF56821 GO:GO:0000467 GO:GO:0071042 GO:GO:0071051
GO:GO:0008143 GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475
GO:GO:0034476 GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047
KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234
OrthoDB:EOG4S1XG7 GO:GO:0071049 EMBL:Z49325 PIR:S56822
RefSeq:NP_012485.1 PDB:2XGJ PDB:3L9O PDBsum:2XGJ PDBsum:3L9O
ProteinModelPortal:P47047 SMR:P47047 DIP:DIP-6394N IntAct:P47047
MINT:MINT-620894 STRING:P47047 PaxDb:P47047 PeptideAtlas:P47047
EnsemblFungi:YJL050W GeneID:853397 KEGG:sce:YJL050W CYGD:YJL050w
EvolutionaryTrace:P47047 NextBio:973882 Genevestigator:P47047
GermOnline:YJL050W Uniprot:P47047
Length = 1073
Score = 1425 (506.7 bits), Expect = 1.3e-222, Sum P(3) = 1.3e-222
Identities = 283/495 (57%), Positives = 358/495 (72%)
Query: 22 TPEEESTKKQRNLTRSCVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQ 81
T + E K R L+ H+VA+P Y T A H N A+TY F LDPFQ
Sbjct: 104 TLQVEQDGKVR-LSHQVRHQVALPPNYDYTPI-AEHKR-VNE------ARTYPFTLDPFQ 154
Query: 82 RVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQ 141
+++C++R ESVLVSAHTSAGKT VAEYAIA + ++KQRVIYTSP+KALSNQKYREL
Sbjct: 155 DTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLA 214
Query: 142 EFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGV 201
EF DVGLMTGD+T++P+A CLVMTTEILR MLYRGSEV++EVAWVIFDE+HYM+D+ERGV
Sbjct: 215 EFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGV 274
Query: 202 VWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVG 261
VWEE+II LP ++ VFLSAT+ NA +FAEWIC +H QPCH+VYT+FRPTPLQHY+FP
Sbjct: 275 VWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAH 334
Query: 262 GSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENXXXX-----XXXXXXXXXXXXXD 316
G G+YLVVDEK FRE+NF K + Q IG + D
Sbjct: 335 GDGIYLVVDEKSTFREENFQKAMASISNQ-IGDDPNSTDSRGKKGQTYKGGSAKGDAKGD 393
Query: 317 IFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNE 376
I+KIVKMI ++K+ PVIVFSFS+R+CE+ A+ MSKLDFN+ +EK+ + ++F NA+ L E
Sbjct: 394 IYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPE 453
Query: 377 EDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPA 436
DR LP I+ +LPLL+RGI +HHSGLLP++KE++E+LFQEG +K LFATETF++GLNMPA
Sbjct: 454 TDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPA 513
Query: 437 KTVVFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTLKDMVL 496
KTVVFT+V+KWDG R++ GEYIQMS I I+M+DE+ME K MV
Sbjct: 514 KTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV- 572
Query: 497 EGQFTAEHVIKNSFH 511
+GQ A+ + ++FH
Sbjct: 573 KGQ--ADR-LDSAFH 584
Score = 640 (230.4 bits), Expect = 1.3e-222, Sum P(3) = 1.3e-222
Identities = 129/316 (40%), Positives = 208/316 (65%)
Query: 617 IVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIED 676
++P+ L I ++ +RL +P D+R ++++ +++E+ RFP G+P L+PVK+MKIED
Sbjct: 759 VIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIED 818
Query: 677 PEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKF 735
+ + L+ +I+ L KL ++PL S E + RK +++ +++QLK K+ +SQ
Sbjct: 819 EDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQ 878
Query: 736 RDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAA 795
D+L+ R RVL++LG + +++LKGR AC I +GDELL+TEL+FNG FN+L Q AA
Sbjct: 879 LDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAA 938
Query: 796 LASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFL 855
L SCF ++ E L+ ELA+PL+ ++E A KIA+I + K+EV +YVES R L
Sbjct: 939 LLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVES-FRHEL 997
Query: 856 MDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAA 915
M+V+Y W +GATF ++ +MTD++EGS+IR +RL+E + +L A +G +L++K A
Sbjct: 998 MEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAV 1057
Query: 916 SESLRRGIMFSNSLYL 931
+ + R I+ + SLYL
Sbjct: 1058 LKLIHRDIVSAGSLYL 1073
Score = 124 (48.7 bits), Expect = 1.3e-222, Sum P(3) = 1.3e-222
Identities = 26/90 (28%), Positives = 53/90 (58%)
Query: 494 MVLEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLD 553
M +EG + E ++++SF QFQ ++P + KK+++L+++ ++ E V EYH+++
Sbjct: 594 MRVEG-ISPEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQA 652
Query: 554 IAQLEKKLMSEITRPERVLYYLGSGRLIKV 583
I + + +T P L +L GRL+++
Sbjct: 653 IKGYREDVRQVVTHPANALSFLQPGRLVEI 682
Score = 39 (18.8 bits), Expect = 4.1e-61, Sum P(2) = 4.1e-61
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 507 KNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGE 541
K++F + ++KA+ I ++ ++ S D+ G+
Sbjct: 345 KSTFREENFQKAMASISNQIG---DDPNSTDSRGK 376
>DICTYBASE|DDB_G0275633 [details] [associations]
symbol:DDB_G0275633 "superkiller viralicidic activity
2-like protein" species:44689 "Dictyostelium discoideum"
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275633 GO:GO:0005524
GO:GO:0003676 EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 KO:K12598 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_643574.1
ProteinModelPortal:Q86IE2 STRING:Q86IE2 EnsemblProtists:DDB0233453
GeneID:8620161 KEGG:ddi:DDB_G0275633 InParanoid:Q86IE2
ProtClustDB:CLSZ2444279 Uniprot:Q86IE2
Length = 1128
Score = 1463 (520.1 bits), Expect = 2.1e-222, Sum P(3) = 2.1e-222
Identities = 278/465 (59%), Positives = 355/465 (76%)
Query: 35 TRSCVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESV 94
++SC+HEV +P G + D ++ NP + A+TY F+LDPFQ S+AC+ERNESV
Sbjct: 175 SKSCIHEVLLPPG-EVNDDPNLY----NPPEPIKPARTYPFKLDPFQATSIACIERNESV 229
Query: 95 LVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVT 154
LVSAHTSAGKT VAEY+IA A RD QRVIYTSP+KALSNQK+R+L + F+DVGLMTGD+T
Sbjct: 230 LVSAHTSAGKTVVAEYSIATALRDGQRVIYTSPIKALSNQKFRDLQETFQDVGLMTGDIT 289
Query: 155 LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAI 214
++ NASCLVMTTEILR MLYRGSE ++EV+WVIFDEIHY++D+ERGVVWEE+II LP ++
Sbjct: 290 INANASCLVMTTEILRSMLYRGSETMREVSWVIFDEIHYLRDKERGVVWEETIILLPDSV 349
Query: 215 KMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQ 274
K VFLSAT+ NA +FA WI +HKQPCHVVYT++RP PLQHY+FP GG GL+LVVDE
Sbjct: 350 KFVFLSATIPNAREFAAWIAKIHKQPCHVVYTEYRPIPLQHYIFPSGGDGLHLVVDENGV 409
Query: 275 FREDNFVKLQDTFLKQKIGGRRENXXXXXXXXXXXXXXXXXDIFKIVKMIMERKFQPVIV 334
FRE+NF+K + ++GG+ D +KIVKMIMER +QPVI+
Sbjct: 410 FREENFLKSLSNLQQPEMGGQ-----SGASRKRGGGNKGPSDCYKIVKMIMERNYQPVII 464
Query: 335 FSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRG 394
FSFS++ECE +A+ MSKLDFN +EK+ VE +F NA+D L+E D+ LPA+ +LPLLKRG
Sbjct: 465 FSFSKKECETYALQMSKLDFNNDDEKNAVETIFNNAIDSLSESDKQLPAVINILPLLKRG 524
Query: 395 IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRY 454
I +HH+GLLP++KE++E+LFQ G +KALFATETF++GLNMPAKTV+FT+V+K+DG+ R+
Sbjct: 525 IGIHHAGLLPILKEIIEILFQYGYIKALFATETFSIGLNMPAKTVIFTSVRKFDGEGMRW 584
Query: 455 IGSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTLKDMVLEGQ 499
I GEYIQMS I I+MVDE+ME K MV +GQ
Sbjct: 585 ISGGEYIQMSGRAGRRGLDERGIVILMVDEKMEPAIAKGMV-KGQ 628
Score = 576 (207.8 bits), Expect = 2.1e-222, Sum P(3) = 2.1e-222
Identities = 120/329 (36%), Positives = 201/329 (61%)
Query: 613 GGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQ--GLPKLNPVK 670
G G I+PV + L ++ + L V + + + + ++E E+RF + G+P ++P++
Sbjct: 802 GEGQIIPVSIKLFDGITSVCLYVKKEQPTQEFKTHLFKTLKETENRFKKDGGIPLIDPIE 861
Query: 671 DMKIEDPEVVDLVNQIEELEHKLFAHP-LNKSQDENQIRCFQRKAEVNHEIQQLKSKMRD 729
DMKI+DP L+ +IE LE + + N + E + ++K E+ EI+QL+ +++
Sbjct: 862 DMKIKDPNFKKLIKKIETLESRFSSTACFNDTDIEERCNLLEKKNEITKEIKQLQKQIKS 921
Query: 730 SQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLD 789
+D+L++ R+L +LG+I DGVV LKGR AC I GDEL+++EL+F G FNDL
Sbjct: 922 GDEVILKDDLRSMKRILTRLGYITDDGVVALKGRVACEISAGDELVISELLFAGLFNDLS 981
Query: 790 HHQVAALASCFIPVDKSS--EQIN---LRMELAKPLQQLQESARKIAEIQNECKLEVNVD 844
Q A+ SCF+ ++ S +N ++ +L + ++++A K+ + ECKL +VD
Sbjct: 982 VEQCVAVFSCFVFQNEGSANNDVNNPKIKPDLVPLYRVIRDTASKVVTVSQECKL-TSVD 1040
Query: 845 E--YVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQA 902
E Y+ S P MDV + W+ GA+FA++++MTD FEG++IR RRLDE + Q+ A+++
Sbjct: 1041 EKTYLAS-FNPNFMDVTFAWASGASFADIVKMTDTFEGNLIRGIRRLDELIRQMVIASKS 1099
Query: 903 VGEVNLEKKFAAASESLRRGIMFSNSLYL 931
+G LE KF+ A+ ++R I F+ SLYL
Sbjct: 1100 IGNTELEAKFSEATVKIKRDIPFAGSLYL 1128
Score = 148 (57.2 bits), Expect = 2.1e-222, Sum P(3) = 2.1e-222
Identities = 29/95 (30%), Positives = 53/95 (55%)
Query: 491 LKDMVLEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKL 550
L +M+ E+++K SFHQ+Q E +P + K ++E+E + E V EY +
Sbjct: 643 LLNMLRVEDIDPENLLKRSFHQYQQESFIPQLVDKCDQMEQEKKEIIIRDETSVTEYSSI 702
Query: 551 KLDIAQLEKKLMSEITRPERVLYYLGSGRLIKVRE 585
K +A+L + + I +P V +L +GR++++RE
Sbjct: 703 KAQLAKLREAMRDFINQPTYVQPFLTAGRIVRIRE 737
Score = 47 (21.6 bits), Expect = 5.3e-53, Sum P(2) = 5.3e-53
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 479 IIMVDEQMEMNTLKDMVLEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASL 536
++ +DE+++ N + +G T + V SF+ Q + L + + V K E E S+
Sbjct: 95 LMSLDEEIQRNKKQ----KGGNTKQAVADISFNAKQSDTTLDKLRENVEKKEREELSM 148
>POMBASE|SPAC6F12.16c [details] [associations]
symbol:mtr4 "ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4" species:4896 "Schizosaccharomyces pombe" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0016078 "tRNA catabolic process" evidence=ISO]
[GO:0031499 "TRAMP complex" evidence=IDA] [GO:0043630 "ncRNA
polyadenylation involved in polyadenylation-dependent ncRNA
catabolic process" evidence=ISO] [GO:0071049 "nuclear retention of
pre-mRNA with aberrant 3'-ends at the site of transcription"
evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
PomBase:SPAC6F12.16c GO:GO:0005524 EMBL:CU329670 GO:GO:0005730
GO:GO:0003676 GO:GO:0031499 GO:GO:0043630 GO:GO:0016078
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696
Pfam:PF13234 EMBL:AB027847 PIR:T11667 RefSeq:NP_593302.1
ProteinModelPortal:O14232 STRING:O14232 EnsemblFungi:SPAC6F12.16c.1
GeneID:2541639 KEGG:spo:SPAC6F12.16c OMA:DDRISAD OrthoDB:EOG4S1XG7
NextBio:20802732 GO:GO:0071049 Uniprot:O14232
Length = 1117
Score = 1436 (510.6 bits), Expect = 2.4e-221, Sum P(3) = 2.4e-221
Identities = 290/505 (57%), Positives = 360/505 (71%)
Query: 14 EEDLHVTG----TPEEESTKKQRNLTRSCVHEVAVPSGYALTKDEAIHGTFANPVYNGEM 69
E L V G T + ST++ L H+V++P Y D +P+
Sbjct: 139 EASLQVAGKVGMTEAKSSTEEVVELRHQVRHQVSIPPNY----DYVPISKHKSPI---PP 191
Query: 70 AKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLK 129
A+TY F LDPFQ VS+AC+ER ESVLVSAHTSAGKT VAEYA+A + RDKQRVIYTSP+K
Sbjct: 192 ARTYPFTLDPFQAVSIACIERQESVLVSAHTSAGKTVVAEYAVAQSLRDKQRVIYTSPIK 251
Query: 130 ALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFD 189
ALSNQKYREL EF DVGLMTGDVT++P+A+CLVMTTEILR MLYRGSEV++EVAWVIFD
Sbjct: 252 ALSNQKYRELLAEFGDVGLMTGDVTINPDATCLVMTTEILRSMLYRGSEVMREVAWVIFD 311
Query: 190 EIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFR 249
EIHYM+D+ERGVVWEE+II LP VFLSAT+ NA QFAEWI +H+QPCHVVYTDFR
Sbjct: 312 EIHYMRDKERGVVWEETIILLPDKSHFVFLSATIPNAMQFAEWITKIHRQPCHVVYTDFR 371
Query: 250 PTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQK---IGGRRENXXXXXXXX 306
PTPLQHY+FP G G++LVVDEK FRE+NF + ++++
Sbjct: 372 PTPLQHYLFPSGSDGIHLVVDEKSNFREENFQRAMSALMEKQGDDPAAMATKGNAKKGKT 431
Query: 307 XXXXXXXXXDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQV 366
DI+KIVKMIM + + PVIVFSFS+RECE A+ MSKLD N Q E+D V +
Sbjct: 432 GKGGVKGPSDIYKIVKMIMVKNYNPVIVFSFSKRECEALALQMSKLDMNDQTERDLVTTI 491
Query: 367 FQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATE 426
F NAV+ L+E+DR LP IE +LPLL+RGI +HHSGLLP++KE++E+LFQEGL+K LFATE
Sbjct: 492 FNNAVNQLSEKDRELPQIEHILPLLRRGIGIHHSGLLPILKEVIEILFQEGLLKVLFATE 551
Query: 427 TFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQM 486
TF++GLNMPAKTVVFT V+K+DG + R+I GEYIQMS I I+M+DE+M
Sbjct: 552 TFSIGLNMPAKTVVFTNVRKFDGKTFRWISGGEYIQMSGRAGRRGLDDRGIVILMIDEKM 611
Query: 487 EMNTLKDMVLEGQFTAEHVIKNSFH 511
+ K M L+G+ A+ + ++FH
Sbjct: 612 DPPVAKSM-LKGE--ADR-LDSAFH 632
Score = 636 (228.9 bits), Expect = 2.4e-221, Sum P(3) = 2.4e-221
Identities = 132/322 (40%), Positives = 210/322 (65%)
Query: 612 RGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKD 671
+G +VP L + ++ IR+ +P DL+ + ++ A+ E++ RFP+G+ L+PV++
Sbjct: 797 KGKFEVVPFLLSSLDGIAHIRVFLPNDLKSQGQKLTVGKALSEVKRRFPEGITLLDPVEN 856
Query: 672 MKIEDPEVVDLVNQIEELEHKLFAHPL-NKSQDENQIRCFQRKAEVNHEIQQLKSKMRDS 730
M I++P + L+ ++ LE +L ++PL N S+ E + + RK + E++ LK K+ +
Sbjct: 857 MNIKEPTFIKLMKKVNILESRLLSNPLHNFSELEEKYAEYLRKLALLEEVKDLKKKLSKA 916
Query: 731 QIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH 790
+ DEL +R RVL++LG +D V+++KGR AC I +GD LL+TEL+FNG FNDL
Sbjct: 917 RSIMQLDELNSRKRVLRRLGFTTSDDVIEVKGRVACEISSGDGLLLTELIFNGMFNDLTP 976
Query: 791 HQVAALASCFIPVDKSS-EQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVES 849
Q AAL SC + +KS E ++ ELA PL+ LQE AR+IA++ E K E+N +EYV S
Sbjct: 977 EQCAALLSCLVFQEKSEVENQRMKEELAGPLKILQEMARRIAKVSKESKQELNEEEYVNS 1036
Query: 850 TVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLE 909
+P LM+V+Y W+ GA+FA++ +MTD++EGS+IR RRL+E + Q+ AA+ +G +L+
Sbjct: 1037 -FKPSLMEVVYAWAHGASFAQICKMTDVYEGSLIRMFRRLEELIRQMVDAAKVIGNTSLQ 1095
Query: 910 KKFAAASESLRRGIMFSNSLYL 931
+K + R I+FS SLYL
Sbjct: 1096 QKMEDTIACIHRDIVFSASLYL 1117
Score = 105 (42.0 bits), Expect = 2.4e-221, Sum P(3) = 2.4e-221
Identities = 26/99 (26%), Positives = 49/99 (49%)
Query: 486 MEMNTLKDMVLEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVA 545
M +N L+ +EG + E +++ F QFQ +P + K+ + ++ S E +
Sbjct: 637 MILNLLR---VEG-ISPEFMLERCFFQFQNSLEVPKLEAKLEESQQHYDSFTILDERPLE 692
Query: 546 EYHKLKLDIAQLEKKLMSEITRPERVLYYLGSGRLIKVR 584
EYH LK + + + + + P L +L GRL++V+
Sbjct: 693 EYHTLKTQLERYRTDVRTVVNHPNFCLSFLQGGRLVRVK 731
Score = 42 (19.8 bits), Expect = 1.5e-60, Sum P(2) = 1.5e-60
Identities = 9/43 (20%), Positives = 21/43 (48%)
Query: 531 EEAASLDASGEAEVAEYHKLKLDIAQLEKKLMSEITRPERVLY 573
E+ ASL +G+ + E ++ +L ++ +++ P Y
Sbjct: 137 EQEASLQVAGKVGMTEAKSSTEEVVELRHQVRHQVSIPPNYDY 179
>UNIPROTKB|F1MAH7 [details] [associations]
symbol:F1MAH7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 IPI:IPI00372914 PRIDE:F1MAH7
Ensembl:ENSRNOT00000013683 ArrayExpress:F1MAH7 Uniprot:F1MAH7
Length = 1046
Score = 1427 (507.4 bits), Expect = 1.4e-216, Sum P(2) = 1.4e-216
Identities = 277/462 (59%), Positives = 338/462 (73%)
Query: 38 CVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVS 97
C HEV+ P + A+P G ++ F F R V CL N+SVLVS
Sbjct: 110 CTHEVSWPQTHRYPP--------ASPAC-GTKLPSFPFSYSIFYREMVECLTINQSVLVS 160
Query: 98 AHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSP 157
AHTSAGKT AEYAIA+A R+KQRVI+TSP+KALSNQKYRE+++EF+DVGLMTGDVT++P
Sbjct: 161 AHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINP 220
Query: 158 NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMV 217
ASCLVMTTEILR MLYRGSEV++EVAWVIFDEIHYM+D ERGVVWEE+II LP + V
Sbjct: 221 TASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYV 280
Query: 218 FLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFRE 277
FLSAT+ NA QFAEWICHLHKQPCHV+YTD+RPTPLQHY+FP GG GL+LVVDE FRE
Sbjct: 281 FLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFRE 340
Query: 278 DNFVKLQDTFLKQKIGGRRENXXXXXXXXXXXXXXXXXDIFKIVKMIMERKFQPVIVFSF 337
DNF + G + ++FKIVKMIMER FQPVI+FSF
Sbjct: 341 DNFNTAMQVL--RDAG----DLAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSF 394
Query: 338 SRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAV 397
S+++CE +A+ M+KLDFNT EEK VE+VF NA+DCL++ED+ LP +E +LPLLKRGI +
Sbjct: 395 SKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGI 454
Query: 398 HHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGS 457
HH GLLP++KE +E+LF EGL+KALFATETFAMG+NMPA+TV+FT +K+DG R+I S
Sbjct: 455 HHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKYDGKDFRWISS 514
Query: 458 GEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTLKDMVLEGQ 499
GEYIQMS I I+MVDE+M K ++ +GQ
Sbjct: 515 GEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKKGQ 556
Score = 688 (247.2 bits), Expect = 1.4e-216, Sum P(2) = 1.4e-216
Identities = 138/322 (42%), Positives = 211/322 (65%)
Query: 612 RGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKD 671
+G +VPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ D
Sbjct: 726 KGEMQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPIDD 785
Query: 672 MKIEDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDS 730
M I+D + ++ ++E EH++++HPL+ + E ++KA++ +I+ K +++ +
Sbjct: 786 MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKA 845
Query: 731 QIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLI-DTGDELLVTELMFNGTFNDLD 789
+ DELK R +KL QLK R + + + DELL+TE+MFNG FNDL
Sbjct: 846 RTVLQMDELKCRKPCTRKLIFKITSDEKQLKHRVSLTVHSSADELLLTEMMFNGLFNDLS 905
Query: 790 HHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVES 849
Q AL SCF+ + SSE L +LA PL+Q+QE A++IA++ E KLE++ + Y+ S
Sbjct: 906 SEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYL-S 964
Query: 850 TVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLE 909
+ +P LMDV+Y W+ GATFA + +MTD+FEGSIIR RRL+E L Q+ AA+A+G LE
Sbjct: 965 SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE 1024
Query: 910 KKFAAASESLRRGIMFSNSLYL 931
KFA ++R I+F+ SLYL
Sbjct: 1025 NKFAEGITKIKRDIVFAASLYL 1046
>CGD|CAL0003794 [details] [associations]
symbol:orf19.1335 species:5476 "Candida albicans" [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0034459 "ATP-dependent
3'-5' RNA helicase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0031499 "TRAMP complex" evidence=IEA] [GO:0034476
"U5 snRNA 3'-end processing" evidence=IEA] [GO:0071049 "nuclear
retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IEA] [GO:0000467 "exonucleolytic trimming
to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IEA] [GO:0043629 "ncRNA polyadenylation"
evidence=IEA] [GO:0071051 "polyadenylation-dependent snoRNA 3'-end
processing" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003794 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581
EMBL:AACQ01000188 EMBL:AACQ01000187 KO:K12598 InterPro:IPR025696
Pfam:PF13234 RefSeq:XP_711657.1 RefSeq:XP_711675.1
RefSeq:XP_888948.1 STRING:Q59PN6 GeneID:3646717 GeneID:3646739
GeneID:3703907 KEGG:cal:CaO19.1335 KEGG:cal:CaO19.8915
KEGG:cal:CaO19_1335 Uniprot:Q59PN6
Length = 1106
Score = 1418 (504.2 bits), Expect = 2.8e-212, Sum P(3) = 2.8e-212
Identities = 284/505 (56%), Positives = 357/505 (70%)
Query: 13 PEEDLHVTGTPEEESTKKQRNLTRSCVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKT 72
P E L + T + ++ K ++ R H+VA+P Y G A+T
Sbjct: 132 PSEGLSNSATVDADNKLKLKHQIR---HQVAIPPSYPYVPI----GEHKRK----HEART 180
Query: 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALS 132
Y F LDPFQ +++C++RNESVLVSAHTSAGKT VAEYAIA + RDKQRVIYTSP+KALS
Sbjct: 181 YPFTLDPFQDTAISCIDRNESVLVSAHTSAGKTVVAEYAIAQSLRDKQRVIYTSPIKALS 240
Query: 133 NQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192
NQK+REL F DVGLMTGDVT++P+A CLVMTTEILR MLYRGSEV++EVAWV+FDE+H
Sbjct: 241 NQKFRELQAIFGDVGLMTGDVTINPDAGCLVMTTEILRSMLYRGSEVMREVAWVVFDEVH 300
Query: 193 YMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTP 252
YM+D+ RGVVWEE+II LP + VFLSAT+ NA +FAEWI +H QPCHVVYTDFRPTP
Sbjct: 301 YMRDKSRGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWIVKIHNQPCHVVYTDFRPTP 360
Query: 253 LQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENXXXXXXXXXXXXXX 312
LQHY+FP GG G++LVVDEK FRE+NF K T + G +
Sbjct: 361 LQHYLFPAGGDGIHLVVDEKGTFREENFQKAMAT-ISDNSGDDPASSDSGRGNKKGKTNK 419
Query: 313 XXX------DIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQV 366
DI+KIVKMI +K+ PVIVFSFS+R+CE A+ MSKLDFNT EE++++ Q+
Sbjct: 420 GRNHQDGKGDIYKIVKMIYMKKYNPVIVFSFSKRDCESLALKMSKLDFNTDEERNSLTQI 479
Query: 367 FQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATE 426
F NA++ L E DR LP I+ +LPLLKRGI +HHSGLLP++KE++E+LFQEG +K LFATE
Sbjct: 480 FYNAIELLPEADRELPQIKNILPLLKRGIGIHHSGLLPILKEIIEILFQEGFLKVLFATE 539
Query: 427 TFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQM 486
TF++GLNMPAKTVVFT+V+KWDG R++ GEYIQMS I I+M+DE+M
Sbjct: 540 TFSIGLNMPAKTVVFTSVRKWDGVGFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 599
Query: 487 EMNTLKDMVLEGQFTAEHVIKNSFH 511
E K MV +GQ A+ + ++FH
Sbjct: 600 EPQVAKGMV-KGQ--ADR-LDSAFH 620
Score = 548 (198.0 bits), Expect = 2.8e-212, Sum P(3) = 2.8e-212
Identities = 117/330 (35%), Positives = 200/330 (60%)
Query: 607 GTLPSRGG----GYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQG 662
G P++ G + + L I +S +RL VP D + A+++++ +++L R P G
Sbjct: 778 GIRPAKSGEQTRAEFISITLSSIEKISTVRLRVPDDYKSSTAKRTLVKTLKDLPKRLPDG 837
Query: 663 LPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRC-FQRKAEVNHEIQ 721
+P ++PV+ MKI D + L+ +I+ L+ K+ ++PLN S + + + K ++N++I+
Sbjct: 838 IPLIDPVQSMKITDDDFKKLLQKIDILDSKIVSNPLNNSARLDDLYAKYTAKVDLNNQIK 897
Query: 722 QLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMF 781
+L+ ++ ++ D+L N RVLKKL ++ VV+LKGR A + TGDEL++TEL+F
Sbjct: 898 KLEEQIFQAKSIIQLDQLSNMKRVLKKLEFTGSEEVVELKGRVAAELSTGDELMITELLF 957
Query: 782 NGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEV 841
+G FN+L Q+ L S FI +++ E L+ ELA+P + + E+A KIA+I + LE+
Sbjct: 958 SGFFNELTPQQICGLLSAFIFQERAKELPKLKPELAEPAKVIHETANKIAKISKQSGLEI 1017
Query: 842 NVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQ 901
+Y+E L++V++ WS GA+F+ + +MTDI+EGSIIR+ RR E + QL A++
Sbjct: 1018 VEKDYIEQ-FNLALVEVVFVWSNGASFSSICKMTDIYEGSIIRALRREIELIKQLVDASK 1076
Query: 902 AVGEVNLEKKFAAASESLRRGIMFSNSLYL 931
+G L KF E + R + +SLY+
Sbjct: 1077 IIGNQELVDKFEKCIELINRDFVQVSSLYM 1106
Score = 125 (49.1 bits), Expect = 2.8e-212, Sum P(3) = 2.8e-212
Identities = 27/91 (29%), Positives = 53/91 (58%)
Query: 494 MVLEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLD 553
M +EG + E ++++SF QFQ ++P + K+++ ++E A + E + +Y+ LK
Sbjct: 630 MRVEG-ISPEFMLEHSFFQFQKASSVPILEGKLAQCKQEFADITIEDEPIIKDYYDLKQQ 688
Query: 554 IAQLEKKLMSEITRPERVLYYLGSGRLIKVR 584
+ + + + IT P +L +L GR+IKV+
Sbjct: 689 LLKYNEDVRKVITHPGNILPFLQDGRVIKVK 719
>TAIR|locus:2026001 [details] [associations]
symbol:MTR4 "homolog of yeast MTR4" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0031125 "rRNA 3'-end processing" evidence=IMP] [GO:0000398
"mRNA splicing, via spliceosome" evidence=RCA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=RCA] [GO:0000741 "karyogamy" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006406 "mRNA export from nucleus" evidence=RCA] [GO:0006606
"protein import into nucleus" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009909 "regulation of
flower development" evidence=RCA] [GO:0010074 "maintenance of
meristem identity" evidence=RCA] [GO:0010212 "response to ionizing
radiation" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0043687 "post-translational protein modification"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0048825 "cotyledon development"
evidence=RCA] [GO:0051301 "cell division" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
EMBL:AC007258 UniGene:At.74832 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0031125 eggNOG:COG4581
HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:AK176836 IPI:IPI00536033 PIR:E96621
RefSeq:NP_176185.1 UniGene:At.43462 ProteinModelPortal:Q9XIF2
SMR:Q9XIF2 PaxDb:Q9XIF2 PRIDE:Q9XIF2 EnsemblPlants:AT1G59760.1
GeneID:842269 KEGG:ath:AT1G59760 TAIR:At1g59760 InParanoid:Q9XIF2
PhylomeDB:Q9XIF2 ProtClustDB:CLSN2679700 ArrayExpress:Q9XIF2
Genevestigator:Q9XIF2 Uniprot:Q9XIF2
Length = 988
Score = 1424 (506.3 bits), Expect = 4.5e-211, Sum P(2) = 4.5e-211
Identities = 290/573 (50%), Positives = 385/573 (67%)
Query: 9 KRKAPEEDLHVTGTP-----EEESTKKQRNLTRSCVHEVAVPSGYALTKDEAIHGTFANP 63
KRK+ EE + P E++ST+ CVH+V+ P Y A
Sbjct: 5 KRKSVEESSD-SAPPQKVQREDDSTQIINEELVGCVHDVSFPENYV---------PLAPS 54
Query: 64 VYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVI 123
V+N AK + F LD FQ ++ CL+ ESV+VSAHTSAGKT VA YAIAM+ ++ QRVI
Sbjct: 55 VHNKPPAKDFPFTLDSFQSEAIKCLDNGESVMVSAHTSAGKTVVASYAIAMSLKENQRVI 114
Query: 124 YTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEV 183
YTSP+KALSNQKYR+ +EF DVGLMTGDVT+ PNASCLVMTTEILR M Y+GSE+++EV
Sbjct: 115 YTSPIKALSNQKYRDFKEEFSDVGLMTGDVTIDPNASCLVMTTEILRSMQYKGSEIMREV 174
Query: 184 AWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHV 243
AW+IFDE+HYM+D ERGVVWEESI+ P + VFLSAT+ NA +FA+W+ +H+QPCH+
Sbjct: 175 AWIIFDEVHYMRDSERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHI 234
Query: 244 VYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENXXXXX 303
VYTD+RPTPLQHYVFP GG+GLYLVVDEK +F ED+F K + + ++ +
Sbjct: 235 VYTDYRPTPLQHYVFPAGGNGLYLVVDEKSKFHEDSFQKSLNALVPTNESDKKRDNGKFQ 294
Query: 304 XXXXXXXXXXXXDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTV 363
DIFK+VKMI++R++ PVI+FSFS++ECE AM MSK+ N+ +EKD V
Sbjct: 295 KGLVIGKLGEESDIFKLVKMIIQRQYDPVILFSFSKKECEALAMQMSKMVLNSDDEKDAV 354
Query: 364 EQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALF 423
E +F +A+D L+++D+ LP + +LP+LKRGI VHHSGLLP++KE++E+LFQEGL+K LF
Sbjct: 355 ETIFASAIDMLSDDDKKLPQVSNILPILKRGIGVHHSGLLPILKEVIEILFQEGLIKCLF 414
Query: 424 ATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVD 483
ATETF++GLNMPAKTVVFT V+K+DGD R++ SGEYIQMS ICI+MVD
Sbjct: 415 ATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICILMVD 474
Query: 484 EQMEMNTLKDMVLEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAE 543
E+ME K M L+G +A+ + ++FH Y L + + E + +A+
Sbjct: 475 EKMEPAVAKSM-LKG--SADS-LNSAFH-LSYNMLLNQLRCEEGDPENLLRNSFFQFQAD 529
Query: 544 VAEYHKLKLDIAQLEKKLMSEITRPERVL--YY 574
A L+ I LE++ S + E L YY
Sbjct: 530 RA-IPDLEKQIKSLEEERDSLVIEEEESLKNYY 561
Score = 639 (230.0 bits), Expect = 4.5e-211, Sum P(2) = 4.5e-211
Identities = 134/324 (41%), Positives = 207/324 (63%)
Query: 609 LPSRGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNP 668
+ RG +V V L I +LS +++P DL PL+AR++ L V EL SR P G+P L+P
Sbjct: 667 IKERGEPVVVTVPLSQIKSLSSAIMNIPKDLVPLEARENALKKVSELLSRHPDGIP-LDP 725
Query: 669 VKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQ-DENQIRCFQRKAEVNHEIQQLKSKM 727
DMKI+ V ++E LE+ H + KS +++ Q K E+ +I+ LK +
Sbjct: 726 EVDMKIKSSSYKKTVRRLEALENLFEKHKIAKSPLITEKLKVLQMKEELIAKIKSLKKTV 785
Query: 728 RDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFND 787
R S F+DELK R RVL++LG+I +D VV+LKG+ AC I + +EL +TELMF+G F D
Sbjct: 786 RSSTALAFKDELKARKRVLRRLGYITSDNVVELKGKVACEISSAEELTLTELMFSGIFKD 845
Query: 788 LDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYV 847
++ +L SCF+ ++ + R EL QLQ++AR++AE+Q +CK+E++V+ +V
Sbjct: 846 AKVEELVSLLSCFVWRERLPDAAKPREELDLLFIQLQDTARRVAEVQLDCKVEIDVESFV 905
Query: 848 ESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVN 907
+S RP +M+ +Y W+KG+ F EV+++ +FEGS+IR+ RR++E L QL AA+++GE
Sbjct: 906 QS-FRPDIMEAVYAWAKGSKFYEVMEIARVFEGSLIRAIRRMEEVLQQLIVAAKSIGETQ 964
Query: 908 LEKKFAAASESLRRGIMFSNSLYL 931
LE K A ++R I+F+ SLYL
Sbjct: 965 LEAKLEEAVSKIKRDIVFAASLYL 988
Score = 128 (50.1 bits), Expect = 9.1e-71, Sum P(2) = 9.1e-71
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 503 EHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLM 562
E++++NSF QFQ ++A+PD+ K++ LEEE SL E + Y+ L L L+K +
Sbjct: 516 ENLLRNSFFQFQADRAIPDLEKQIKSLEEERDSLVIEEEESLKNYYNLILQYKSLKKDIR 575
Query: 563 SEITRPERVLYYLGSGRLI 581
+ P+ L +L R +
Sbjct: 576 EIVFTPKYCLPFLLPNRAV 594
Score = 43 (20.2 bits), Expect = 4.6e-148, Sum P(2) = 4.6e-148
Identities = 20/101 (19%), Positives = 42/101 (41%)
Query: 752 IDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQIN 811
+ DGV + K +A + + G+ ++VT + Q+ +L+S + + K +
Sbjct: 652 VSKDGVGKKKVKAVPIKERGEPVVVTVPL----------SQIKSLSSAIMNIPKDLVPLE 701
Query: 812 LRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVR 852
R K + +L + E +++ Y + TVR
Sbjct: 702 ARENALKKVSELLSRHPDGIPLDPEVDMKIKSSSY-KKTVR 741
>UNIPROTKB|F1MJX4 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026
GeneTree:ENSGT00690000102230 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:DAAA02050346 EMBL:DAAA02050343 EMBL:DAAA02050344
EMBL:DAAA02050345 IPI:IPI00839454 Ensembl:ENSBTAT00000047363
Uniprot:F1MJX4
Length = 937
Score = 1549 (550.3 bits), Expect = 1.4e-205, Sum P(2) = 1.4e-205
Identities = 319/608 (52%), Positives = 411/608 (67%)
Query: 2 EESLMAGKRKAPE---EDLHVTGTPEEESTKKQRNLTRSCVHEVAVPSGYALTKDEAIHG 58
+E + K + E EDL + + + C HEVA+P+ DE
Sbjct: 70 DEPIFGKKPRVEESITEDLSLADLMPRVKVQSVETV-EGCTHEVALPA------DEDYLP 122
Query: 59 TFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD 118
P G+ AK Y F LD FQR ++ C++ N+SVLVSAHTSAGKT AEYAIA+A R+
Sbjct: 123 L--KPRV-GKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALRE 179
Query: 119 KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSE 178
KQRVI+TSP+KALSNQKYRE+++EF+DVGLMTGDVT++P ASCLVMTTEILR MLYRGSE
Sbjct: 180 KQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSE 239
Query: 179 VLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHK 238
V++EVAWVIFDEIHYM+D ERGVVWEE+II LP + VFLSAT+ NA QFAEWICHLHK
Sbjct: 240 VMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHK 299
Query: 239 QPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRREN 298
QPCHV+YTD+RPTPLQHY+FP GG GL+LVVDE FREDNF + G +
Sbjct: 300 QPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVL--RDAG----D 353
Query: 299 XXXXXXXXXXXXXXXXXDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQE 358
++FKIVKMIMER FQPVI+FSFS+++CE +A+ M+KLDFNT E
Sbjct: 354 LAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDE 413
Query: 359 EKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGL 418
EK VE+VF NA+DCL++ED+ LP +E +LPLLKRGI +HH GLLP++KE +E+LF EGL
Sbjct: 414 EKKMVEEVFSNAIDCLSDEDKKLPQVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGL 473
Query: 419 VKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXIC 478
+KALFATETFAMG+NMPA+TV+FT +K+DG R+I SGEYIQMS I
Sbjct: 474 IKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIV 533
Query: 479 IIMVDEQME----MNTLK--------------DMVLE----GQFTAEHVIKNSFHQFQYE 516
I+MVDE+M LK +MVL + E++++ SF+QFQ+
Sbjct: 534 ILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHY 593
Query: 517 KALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLMSEITRPERVLYYLG 576
+A+P + +KV EE+ + E V Y+K++ +A+L K++ I +P+ L +L
Sbjct: 594 RAIPGVVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQ 653
Query: 577 SGRLIKVR 584
GRL+KV+
Sbjct: 654 PGRLVKVK 661
Score = 462 (167.7 bits), Expect = 1.4e-205, Sum P(2) = 1.4e-205
Identities = 91/217 (41%), Positives = 143/217 (65%)
Query: 612 RGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKD 671
+G +VPV + L+S +S +RL +P DLRPLD RQS+L ++QE++ RFP G+P L+P+ D
Sbjct: 721 KGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDD 780
Query: 672 MKIEDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDS 730
M I+D + ++ ++E EH++++HPL+ + E ++KA++ +I+ K +++ +
Sbjct: 781 MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKA 840
Query: 731 QIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLID---TGDELLVTELMFNGTFND 787
+ DELK R RVL++LG + V+++KGR AC I + DELL+TE+MFNG FND
Sbjct: 841 RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISRWYSADELLLTEMMFNGLFND 900
Query: 788 LDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQ 824
L Q AL SCF+ + SSE L +LA PL+Q+Q
Sbjct: 901 LSAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQ 937
Score = 41 (19.5 bits), Expect = 1.1e-39, Sum P(2) = 1.1e-39
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTA 106
K S ELDP V V ES+ SA T A K A
Sbjct: 682 KPNSGELDPLYVVEVLLRCSKESLKNSA-TEAAKPA 716
>UNIPROTKB|F1N993 [details] [associations]
symbol:F1N993 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] [GO:0000460 "maturation of 5.8S rRNA"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 GO:GO:0000178 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000460
GO:GO:0008026 GeneTree:ENSGT00690000102230 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 EMBL:AADN02054537 EMBL:AADN02054530
EMBL:AADN02054531 EMBL:AADN02054532 EMBL:AADN02054533
EMBL:AADN02054534 EMBL:AADN02054535 EMBL:AADN02054536
IPI:IPI00599020 Ensembl:ENSGALT00000023719 Uniprot:F1N993
Length = 1031
Score = 1271 (452.5 bits), Expect = 4.3e-204, Sum P(2) = 4.3e-204
Identities = 261/524 (49%), Positives = 349/524 (66%)
Query: 83 VSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE 142
+S A E + + + S + +YAIA+A R+KQRVI+TSP+KALSNQKYRE+++E
Sbjct: 135 ISFALTEVFNNYMFARIWSGSTITLLKYAIALALREKQRVIFTSPIKALSNQKYREMYEE 194
Query: 143 FKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVV 202
F+DVGLMTGDVT++P ASCLVMTTEILR MLYRGSEV++EVAWVIFDEIHYM+D E+G
Sbjct: 195 FQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSEKGNF 254
Query: 203 WEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGG 262
+ I+ +P + + + FAE I KQPCHV+YTD+RPTPLQHY+FP GG
Sbjct: 255 EDIFIVAIPGNTLYIIMELSYYLGDGFAEKIIFSIKQPCHVIYTDYRPTPLQHYIFPAGG 314
Query: 263 SGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENXXXXXXXXXXXXXXXXXDIFKIVK 322
GL LVVDE FREDNF + G + ++FKIVK
Sbjct: 315 DGLRLVVDENGDFREDNFNTAMQVL--RDAG----DLAKGDQKGRKGGTKGPSNVFKIVK 368
Query: 323 MIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLP 382
MIMER FQPVI+FSFS+++CE +A+ M+KLDFNT EEK VE+VF NA+DCL++ED+ LP
Sbjct: 369 MIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLP 428
Query: 383 AIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFT 442
+E +LPLLKRGI +HH GLLP++KE +E+LF EGL+KALFATETFAMG+NMPA+TV+FT
Sbjct: 429 QVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFT 488
Query: 443 AVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQME----MNTLK------ 492
+ K+DG R+I SGEYIQMS I I+MVDE+M LK
Sbjct: 489 SASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPL 548
Query: 493 --------DMVLE----GQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASG 540
+MVL + E++++ SF+QFQ+ +A+P + +KV+KLEE+ +
Sbjct: 549 NSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVNKLEEQYNKIVIPN 608
Query: 541 EAEVAEYHKLKLDIAQLEKKLMSEITRPERVLYYLGSGRLIKVR 584
E V Y+K++ +A+L K++ I +P+ L +L GRL+KV+
Sbjct: 609 EENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVK 652
Score = 726 (260.6 bits), Expect = 4.3e-204, Sum P(2) = 4.3e-204
Identities = 140/321 (43%), Positives = 214/321 (66%)
Query: 612 RGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKD 671
+G +VPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ D
Sbjct: 712 KGEMQVVPVLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDD 771
Query: 672 MKIEDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDS 730
M I+D + ++ ++E EH++++HPL+ + E + +RKA++ +I+ K +++ +
Sbjct: 772 MGIKDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETIYKLCERKAQIAMDIKAAKRELKKA 831
Query: 731 QIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH 790
+ DELK R RVL++LG + V+++KGR AC I + DELL+TE+MFNG FNDL
Sbjct: 832 RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSA 891
Query: 791 HQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVEST 850
Q AL SCF+ + S+E L +LA PL+Q+QE A++IA + E KLE++ + Y+ S
Sbjct: 892 EQATALLSCFVFQENSNEMPKLTEQLAGPLRQMQECAKRIARVSAEAKLEIDEENYLNS- 950
Query: 851 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEK 910
RP LMDV+Y W+ GA+FA + +MTD+FEGSIIR RRL+E L Q+ AA+A+G LE
Sbjct: 951 FRPNLMDVVYTWANGASFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELEN 1010
Query: 911 KFAAASESLRRGIMFSNSLYL 931
KFA R + F + L +
Sbjct: 1011 KFAEGRTYKSRPVSFHSGLQI 1031
Score = 50 (22.7 bits), Expect = 1.2e-132, Sum P(2) = 1.2e-132
Identities = 54/255 (21%), Positives = 99/255 (38%)
Query: 677 PEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFR 736
P VV+ VN++EE +K+ P N+ + Q+ A++ EI++ K K+
Sbjct: 588 PGVVEKVNKLEEQYNKIVI-P-NEENVVIYYKIRQQLAKLGKEIEEYIHK------PKYC 639
Query: 737 DELKNRSRVLKKLGHIDADG---VVQLKGRAACLIDTG--DELLVTELMFNGTFNDLDHH 791
R++K D G VV ++ ++G D L V E++ + + L +
Sbjct: 640 LPFLQPGRLVKVKNEDDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNS 699
Query: 792 QVAALASCFIPVDKSSEQI-----NLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEY 846
A A P +K Q+ +L ++ + + R I Q+ K V +
Sbjct: 700 ATEA-AKPARPDEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKR 758
Query: 847 VESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEV 906
V P L + K +VIQ + FE + D L + + ++
Sbjct: 759 FPDGV-PLLDPIDDMGIKDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETIYKLCERKAQI 817
Query: 907 NLEKKFAAASESLRR 921
++ K AA L++
Sbjct: 818 AMDIK--AAKRELKK 830
Score = 40 (19.1 bits), Expect = 8.8e-74, Sum P(2) = 8.8e-74
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTA 106
K S ELDP V V ES+ SA T A K A
Sbjct: 673 KPNSGELDPLYVVEVLLHCSKESLKNSA-TEAAKPA 707
>WB|WBGene00012342 [details] [associations]
symbol:mtr-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0040011 InterPro:IPR018247
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0040020 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0040022 GO:GO:0008026 eggNOG:COG4581 EMBL:Z70271 PIR:T26282
RefSeq:NP_501757.1 ProteinModelPortal:Q23223 SMR:Q23223
MINT:MINT-6670291 STRING:Q23223 PaxDb:Q23223 EnsemblMetazoa:W08D2.7
GeneID:177824 KEGG:cel:CELE_W08D2.7 CTD:177824 WormBase:W08D2.7
GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047 InParanoid:Q23223
KO:K12598 OMA:ENFQKAM NextBio:898538 InterPro:IPR025696
Pfam:PF13234 Uniprot:Q23223
Length = 1026
Score = 1276 (454.2 bits), Expect = 8.0e-202, Sum P(3) = 8.0e-202
Identities = 255/488 (52%), Positives = 330/488 (67%)
Query: 9 KRKAPEEDLHVTGTPEEESTKKQ-RNLTRSCVHEVAVPSGYALTKDEAIHGTFANPVYNG 67
KR EE+ V E R +C HEVA+P + GT
Sbjct: 65 KRARVEEEEEVEEARMENIIVHTIRTDNENCTHEVAIPPNAEFAELRENSGT-------- 116
Query: 68 EMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127
E AK Y F+LD FQ+ ++ C++ N+SVLVSAHTSAGKT VA YAIA R+KQRVIYTSP
Sbjct: 117 EPAKYYPFQLDAFQKQAILCIDNNQSVLVSAHTSAGKTVVATYAIAKCLREKQRVIYTSP 176
Query: 128 LKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVI 187
+KALSNQKYREL +EFKDVGLMTGDVTL+P+ASCLVMTTEILR MLYRGSE++KEV WV+
Sbjct: 177 IKALSNQKYRELEEEFKDVGLMTGDVTLNPDASCLVMTTEILRSMLYRGSEIMKEVGWVV 236
Query: 188 FDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTD 247
+DEIHYM+D+ERGVVWEE+II + IK FLSAT+ NA QFA+W+ + +QP +VVYTD
Sbjct: 237 YDEIHYMRDKERGVVWEETIILMSKNIKQAFLSATIPNARQFAQWVASIKQQPVNVVYTD 296
Query: 248 FRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENXXXXXXXXX 307
+RPTPLQH+++PVGG G+Y VV+ K +FRED F +D G ++
Sbjct: 297 YRPTPLQHWIYPVGGEGMYEVVNVKGEFREDKF---RDAMSGLATAG--DSAGSFNKRRT 351
Query: 308 XXXXXXXXDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVF 367
++ KI++ + IVFSFSR+ECE +A+S+ +DFN EK V+ V+
Sbjct: 352 GGGTQGDSNVLKIIRSVASNDGLNCIVFSFSRKECESYAISLKDMDFNKDHEKGMVKSVY 411
Query: 368 QNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATET 427
++A+ L+ ED+ LP I +LPLL+RGI VHHSGL+P++KE +E+LF EGLVK LFATET
Sbjct: 412 ESAIAQLSPEDQKLPQILNILPLLRRGIGVHHSGLMPILKETIEILFGEGLVKVLFATET 471
Query: 428 FAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQME 487
F+MGLNMPA+TVVFT+ +K+DG +RYI SGEYIQM+ I+MVD M
Sbjct: 472 FSMGLNMPARTVVFTSARKFDGSDNRYITSGEYIQMAGRAGRRGKDDRGTVILMVDSAMS 531
Query: 488 MNTLKDMV 495
+ K ++
Sbjct: 532 ADDAKQII 539
Score = 600 (216.3 bits), Expect = 8.0e-202, Sum P(3) = 8.0e-202
Identities = 126/315 (40%), Positives = 196/315 (62%)
Query: 618 VPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDP 677
VP+ + I+ +S +RL VP D+ D + + + RF +P L+P++DM+I+
Sbjct: 714 VPMTIDRITAISAVRLKVPADIDKPDGQMRLDGMMAAATKRFGNQIPLLDPIQDMEIKTV 773
Query: 678 EVVDLVNQIEELEHKLFAHPLNKSQDENQIRC-FQRKAEVNHEIQQLKSKMRDSQIQKFR 736
E+ +L+ + + LE +L H + K + ++ F++K + E+ LK++ + Q
Sbjct: 774 EMKELIAREKSLEGRLETHSMTKRDNMKDLKKQFEQKQDAVKELNALKAERKSVQSTLHL 833
Query: 737 DELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAAL 796
+EL NR RVL++LG++ D + LKG AC + DEL++TE++ G FN LD Q AAL
Sbjct: 834 EELNNRKRVLRRLGYLGNDDALVLKGSVACELSASDELILTEMLLKGIFNTLDVAQTAAL 893
Query: 797 ASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLM 856
SCF+ DK + L EL L +L E AR +A++ NECK+EV D+YV S+ P LM
Sbjct: 894 LSCFVFQDKCAAP-KLATELQTCLSELHEQARNVAKVSNECKMEVMEDKYV-SSFNPGLM 951
Query: 857 DVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAAS 916
DV+Y W GATF+E+++ TD+FEGSIIR+ RRL+E L ++ AA+A+ LE+KF A
Sbjct: 952 DVVYQWVNGATFSEIVKTTDVFEGSIIRTLRRLEEVLREMINAAKALANKELEQKFEDAR 1011
Query: 917 ESLRRGIMFSNSLYL 931
++L+R I+F+ SLYL
Sbjct: 1012 KNLKRDIVFAASLYL 1026
Score = 116 (45.9 bits), Expect = 8.0e-202, Sum P(3) = 8.0e-202
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 494 MVLEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLD 553
M +EG +I NSFHQFQ +P+I KK ++E + AS + E E+ L+
Sbjct: 561 MRVEGM-AVSWIINNSFHQFQSYAKIPEIDKKCVQVERKIASFNFPWENEMRTLVDLQDQ 619
Query: 554 IAQLEKKLMSEITRPERVLYYLGSGRLIKVR 584
+ ++++ P+ ++ +L +GRL KV+
Sbjct: 620 LEATRQRIIQIQREPKYIVGFLHAGRLFKVK 650
Score = 41 (19.5 bits), Expect = 1.2e-55, Sum P(2) = 1.2e-55
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 504 HVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLMS 563
H I+ +E A+P E A L + E A+Y+ +LD Q + L
Sbjct: 86 HTIRTDNENCTHEVAIPP--------NAEFAELRENSGTEPAKYYPFQLDAFQKQAILCI 137
Query: 564 EITRPERVLYYLGSGRLI 581
+ + V + +G+ +
Sbjct: 138 DNNQSVLVSAHTSAGKTV 155
Score = 37 (18.1 bits), Expect = 8.7e-132, Sum P(2) = 8.7e-132
Identities = 15/72 (20%), Positives = 31/72 (43%)
Query: 773 ELLVTELMFNGTFNDLDHH-QVAALASCFIPVDKSSEQINL----RMELAKPLQ-QLQES 826
E + + N +F+ + ++ + + V++ N M LQ QL+ +
Sbjct: 564 EGMAVSWIINNSFHQFQSYAKIPEIDKKCVQVERKIASFNFPWENEMRTLVDLQDQLEAT 623
Query: 827 ARKIAEIQNECK 838
++I +IQ E K
Sbjct: 624 RQRIIQIQREPK 635
>ASPGD|ASPL0000070749 [details] [associations]
symbol:mtr4 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0031499 "TRAMP
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:BN001303
GO:GO:0031499 GO:GO:0043629 GO:GO:0071035 GO:GO:0071038
EMBL:AACD01000076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000467 GO:GO:0071042 GO:GO:0071051 GO:GO:0008143
GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475 GO:GO:0034476
HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 OrthoDB:EOG4S1XG7 GO:GO:0071049 RefSeq:XP_662016.1
ProteinModelPortal:Q5B4W8 STRING:Q5B4W8
EnsemblFungi:CADANIAT00006045 GeneID:2872204 KEGG:ani:AN4412.2
Uniprot:Q5B4W8
Length = 1073
Score = 1347 (479.2 bits), Expect = 1.5e-199, Sum P(2) = 1.5e-199
Identities = 267/483 (55%), Positives = 340/483 (70%)
Query: 34 LTRSCVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNES 93
L+ H+VA+P Y H NP A+ + F LDPFQ+V+V+ ++R ES
Sbjct: 117 LSHQVRHQVAIPPKYPYVPISQ-HKPPENP------ARVWPFTLDPFQQVAVSSIQRGES 169
Query: 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDV 153
VLVSAHTSAGKT VAEYAIA + ++ QRVIYTSP+KALSNQKYRE EF DVGLMTGDV
Sbjct: 170 VLVSAHTSAGKTVVAEYAIAQSLKNNQRVIYTSPIKALSNQKYREFAAEFGDVGLMTGDV 229
Query: 154 TLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPA 213
T++P A+CLVMTTEILR MLYRGSE+++EVAWV+FDEIHYM+D RGVVWEE+II LP
Sbjct: 230 TINPTATCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDATRGVVWEETIILLPDK 289
Query: 214 IKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKE 273
++ VFLSAT+ NA QFAEWI +H QPCHVVYTDFRPTPLQHY FP G G++L+VDEK
Sbjct: 290 VRYVFLSATIPNAMQFAEWITKMHNQPCHVVYTDFRPTPLQHYFFPAGSEGMHLIVDEKG 349
Query: 274 QFREDNFVKLQDTFLKQKIGG-----RRENXXXXXXXXXXXXXXXXXDIFKIVKMIMERK 328
FRE+NF K + +K + DI+KIVKMIM +
Sbjct: 350 VFREENFQKAMSSIADKKGDDPADALAKRKGKGKDKKLNKGGTQEKDDIYKIVKMIMLKS 409
Query: 329 FQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELML 388
PVIVFSFS+RECE +A+ M L FN EK+ V +VF +A++ L+EEDRNLP I+ +L
Sbjct: 410 LNPVIVFSFSKRECEFYALKMKSLAFNDDSEKEMVSKVFNSAIEMLSEEDRNLPQIQNIL 469
Query: 389 PLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448
PLL+RGI VHHSGLLP++KE +E+LFQEGL+K LFATETF++GLNMPAKTVVFT+V+K+D
Sbjct: 470 PLLRRGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFD 529
Query: 449 GDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTLKDMVLEGQFTAEHVIKN 508
G S R++ E++QMS I I+M+ E+M+ K++V G+ + + +
Sbjct: 530 GFSQRWVTPSEFVQMSGRAGRRGLDDRGIVIMMIGEEMDPAVAKEIV-RGE---QDRLNS 585
Query: 509 SFH 511
+FH
Sbjct: 586 AFH 588
Score = 607 (218.7 bits), Expect = 1.5e-199, Sum P(2) = 1.5e-199
Identities = 133/317 (41%), Positives = 200/317 (63%)
Query: 617 IVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIED 676
+VP+ L I +S +R+ VP DL+ D+R + V++++ RFP G+ L+P++DM I+D
Sbjct: 758 VVPLLLNCIQAISHVRMIVPKDLQSKDSRTDMGKKVEQIKKRFPDGIAVLDPIEDMGIKD 817
Query: 677 PEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKF 735
E + +IE LE +L +PL+ S E + K ++ ++I+ K K+ + +
Sbjct: 818 DEFKKTLRKIEVLESRLVTNPLHNSPRLEELYEQYAEKLDLGNKIKATKKKISEGMAIQQ 877
Query: 736 RDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAA 795
DELK R RVL++ G I+ VVQLK R AC I TGDEL+++EL+FNG FN L Q AA
Sbjct: 878 LDELKCRKRVLRRFGFINEAEVVQLKARVACEISTGDELMLSELLFNGFFNKLTPEQAAA 937
Query: 796 LASCFIPVDKSSEQINL-RMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPF 854
+ S F+ +K+ E L + ELAKPL+++Q AR IA++ E KL V+ ++YV+S
Sbjct: 938 VLSVFVFEEKTKETPPLSKEELAKPLKEIQAQARIIAKVAQESKLAVSEEDYVQS-FHWE 996
Query: 855 LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAA 914
LM+VIY W+ G +FA++ MTD++EGS+IR RRL+E L Q+ AA+ +G LE KF
Sbjct: 997 LMEVIYEWANGKSFADICGMTDVYEGSLIRVFRRLEECLRQMAQAAKVMGSEELESKFET 1056
Query: 915 ASESLRRGIMFSNSLYL 931
A +RR I+ + SLYL
Sbjct: 1057 ALTKVRRDIVAAQSLYL 1073
Score = 128 (50.1 bits), Expect = 6.6e-149, Sum P(2) = 6.6e-149
Identities = 45/204 (22%), Positives = 92/204 (45%)
Query: 494 MVLEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLD 553
M +EG + E +++ F+QFQ L + K++++LEE+ A++ S E + EY+ ++
Sbjct: 598 MRVEG-ISPEFMLERCFYQFQNTAGLAGLEKELAELEEKRANMTISDEGTIREYYDIRTQ 656
Query: 554 IAQLEKKLMSEITRPERVLYYLGSGRLIKVREXXXXXXXXXXXXXXXXXXXXXGTLPSRG 613
I Q + + I+ PE + +L GRL+ ++ +
Sbjct: 657 IDQFNDDVRAVISHPEYSVPFLTPGRLLHIKYKDFDFGWGVVVNIKKRKPQKNSEELTGH 716
Query: 614 GGYIVPVQLPLI---STLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPV- 669
YIV V L + S+ +K +P +RP + + V L Q + + +
Sbjct: 717 ASYIVDVLLRVADGSSSGTKTFEDLPQGVRPPKEGEKSQMEVVPLLLNCIQAISHVRMIV 776
Query: 670 -KDMKIEDPEVVDLVNQIEELEHK 692
KD++ +D D+ ++E+++ +
Sbjct: 777 PKDLQSKDSRT-DMGKKVEQIKKR 799
>UNIPROTKB|G4NH56 [details] [associations]
symbol:MGG_03931 "FRQ-interacting RNA helicase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0031499 GO:GO:0043629
GO:GO:0071035 GO:GO:0071038 EMBL:CM001236 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000467 GO:GO:0071042
GO:GO:0071051 GO:GO:0008143 GO:GO:0034459 GO:GO:0034475
GO:GO:0034476 KO:K12598 InterPro:IPR025696 Pfam:PF13234
GO:GO:0071049 RefSeq:XP_003719933.1 EnsemblFungi:MGG_03931T0
GeneID:2677161 KEGG:mgr:MGG_03931 Uniprot:G4NH56
Length = 1102
Score = 1323 (470.8 bits), Expect = 1.2e-198, Sum P(3) = 1.2e-198
Identities = 267/495 (53%), Positives = 344/495 (69%)
Query: 21 GTPEEESTKKQRNLTRSCVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPF 80
GT EE+S N+ H+VA+P + ++ + E A+ Y+F+LDPF
Sbjct: 130 GTKEEDSLVLSHNIQ----HQVALPPDL-----DYVYVPLSEHKPPEEPARKYAFKLDPF 180
Query: 81 QRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELH 140
Q +SVA +ER+ESVLVSAHTSAGKT VAEYAIA + QRVIYTSP+KALSNQK+R+
Sbjct: 181 QSISVASIERDESVLVSAHTSAGKTVVAEYAIAHCLKRNQRVIYTSPIKALSNQKFRDFQ 240
Query: 141 QEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERG 200
EF DVGLMTGDVT++P ASCLVMTTEILR MLYRGSE+ +EV WV+FDEIHYM+D RG
Sbjct: 241 AEFGDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEITREVGWVVFDEIHYMRDATRG 300
Query: 201 VVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPV 260
VVWEE+II LP ++ VFLSAT+ NA QFAEWI +H+Q CHVVYTDFRPTPLQ+YVFP
Sbjct: 301 VVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHRQACHVVYTDFRPTPLQNYVFPA 360
Query: 261 GGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGG----RRENXXXXXXXXXXXXXXXXXD 316
GG G+Y++VDEK FRE F++ + + R++ D
Sbjct: 361 GGDGIYIMVDEKGVFREKKFMEAIGSIAGKNDDDDSMPRQKGKGKNKKAVKNTVPDSKAD 420
Query: 317 IFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNE 376
I KI+KMIM R + PVIVF+FS+RECE A+ +S L+FN + E+ VE +F+NA+ L+E
Sbjct: 421 ITKIIKMIMRRAYHPVIVFNFSKRECENLALKVSTLNFNHESEQKLVEDIFRNAIMSLSE 480
Query: 377 EDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPA 436
ED+ LP I+ +LPLLK+GI VHHSGLLP++KE +E+LFQE L+K LFATETF++GLNMPA
Sbjct: 481 EDQGLPQIQHLLPLLKKGIGVHHSGLLPILKETIEILFQENLIKVLFATETFSIGLNMPA 540
Query: 437 KTVVFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTLKDMVL 496
KTVVF+ VKK+DG R + EYIQMS I I+M+D++++ T K MV
Sbjct: 541 KTVVFSQVKKFDGVKERPLTPSEYIQMSGRAGRRGLDDRGIVIMMIDDKLDPETAKGMVC 600
Query: 497 EGQFTAEHVIKNSFH 511
GQ + + ++FH
Sbjct: 601 -GQ---QDRLNSAFH 611
Score = 521 (188.5 bits), Expect = 1.2e-198, Sum P(3) = 1.2e-198
Identities = 116/318 (36%), Positives = 195/318 (61%)
Query: 617 IVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIED 676
+VP L + +S+IR+ +P D+ L Q + ++E++ RFP G+P L+P+++M I+D
Sbjct: 788 VVPCLLTCMVAISQIRIFMPKDMDHLGKSQ-VSHGLEEVQRRFPDGVPILDPIENMGIKD 846
Query: 677 PEVVDLVNQIEELEHKLFAHPLNKSQDENQI-RCFQRKAEVNHEIQQLKSKMRDSQIQKF 735
L+ +IE LE +L ++PL+ S + ++ ++ K E+ +I++ K + S
Sbjct: 847 DSFKKLMRKIEVLESRLLSNPLHGSPNLPELWDKYKIKTELTSQIKETKRAINKSYSIAQ 906
Query: 736 RDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDT--GDELLVTELMFNGTFNDLDHHQV 793
DELK+R RVL++L I+ + VVQ+K R AC I + G EL+++EL+FNG FN+L+
Sbjct: 907 LDELKSRMRVLRRLNFINENEVVQMKARVACEISSTEGHELVISELLFNGFFNELEPEVC 966
Query: 794 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRP 853
AA+ SCF+ D+ E L+ +L K ++++ A+ IA I E KL+V+ DE V ++
Sbjct: 967 AAILSCFV-FDEKMEGTPLKEDLDKLVREIHAQAKTIARISRESKLDVS-DEQVVGNLKW 1024
Query: 854 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFA 913
L + + W+KG FAE+ +MT+ +EGS++R RRL+E L Q+ A + +G L+KKF
Sbjct: 1025 QLTETVLAWAKGRPFAEICKMTNAYEGSLVRIMRRLEELLRQMAEAGKVMGSEMLQKKFE 1084
Query: 914 AASESLRRGIMFSNSLYL 931
A + R ++ + SLYL
Sbjct: 1085 KALSLISRDVVSAASLYL 1102
Score = 118 (46.6 bits), Expect = 1.2e-198, Sum P(3) = 1.2e-198
Identities = 21/82 (25%), Positives = 49/82 (59%)
Query: 503 EHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLM 562
+++++ F+QFQ ++P + KK+ +L+++ ++ E+ V +YH ++ I +K +
Sbjct: 629 QYMLERCFYQFQNASSVPALEKKLIELQQQRDAMVIPDESTVKDYHTVRQQIEAYKKDME 688
Query: 563 SEITRPERVLYYLGSGRLIKVR 584
+ I P L ++ GRLI+++
Sbjct: 689 AVIQHPNNCLEFMQPGRLIRIK 710
>POMBASE|SPAC17H9.02 [details] [associations]
symbol:SPAC17H9.02 "TRAMP complex ATP-dependent RNA
helicase (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006364
"rRNA processing" evidence=ISO] [GO:0016078 "tRNA catabolic
process" evidence=ISO] [GO:0031499 "TRAMP complex" evidence=ISO]
[GO:0043630 "ncRNA polyadenylation involved in
polyadenylation-dependent ncRNA catabolic process" evidence=ISO]
[GO:0071049 "nuclear retention of pre-mRNA with aberrant 3'-ends at
the site of transcription" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC17H9.02 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GO:GO:0003676 GO:GO:0031499
GO:GO:0043630 GO:GO:0016078 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG4581
HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696 Pfam:PF13234
OrthoDB:EOG4S1XG7 GO:GO:0071049 PIR:T37868 RefSeq:NP_593572.1
ProteinModelPortal:O13799 STRING:O13799 EnsemblFungi:SPAC17H9.02.1
GeneID:2542173 KEGG:spo:SPAC17H9.02 OMA:FARWISE NextBio:20803244
Uniprot:O13799
Length = 1030
Score = 1385 (492.6 bits), Expect = 2.1e-191, Sum P(2) = 2.1e-191
Identities = 277/578 (47%), Positives = 391/578 (67%)
Query: 30 KQRNLTRS-CVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACL 88
K + RS +H+V VP Y + I + + AKTY FELDPFQ ++ C+
Sbjct: 85 KDKRHDRSFALHKVVVPDDY-----DYI--PLNKHIPSDPPAKTYPFELDPFQSTAIKCV 137
Query: 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGL 148
ER ESVLVSAHTSAGKT +AEYAIA A +++QRVIYTSP+K+LSNQKYREL EF DVGL
Sbjct: 138 ERMESVLVSAHTSAGKTVIAEYAIAQALKNRQRVIYTSPIKSLSNQKYRELLSEFGDVGL 197
Query: 149 MTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII 208
MTGDV+++P+ASCL+MTTEILR MLY+ SE++ E+AWVIFDE+HYM+D++RGVVWEE++I
Sbjct: 198 MTGDVSINPSASCLIMTTEILRAMLYKNSEIMHEIAWVIFDEVHYMRDKDRGVVWEETLI 257
Query: 209 FLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLV 268
LP AI+ +FLSAT+ NA QFA WI +HKQPCHVVYTD+RPTPLQH+++P G G+Y++
Sbjct: 258 LLPDAIRFIFLSATLPNALQFARWISEIHKQPCHVVYTDYRPTPLQHFIYPQGADGIYML 317
Query: 269 VDEKEQFREDNFVKLQDTFLKQKIGGRRENXXXXXXXXXXXXXXXXXDIFKIVKMIMERK 328
VDEK +F+ +NF K+ + L R+EN + +I+ M++ +
Sbjct: 318 VDEKNKFKTENFKKVLEV-LDHST--RQENYSKSSKKVKKSSS-----LERIINMVLSNR 369
Query: 329 FQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELML 388
+ P+IVF FS++ECE +A KLD N E K+ V ++F +A++ L+EEDR L E M
Sbjct: 370 YDPIIVFCFSKKECEINAHQFGKLDLNDTENKELVTEIFDSAINQLSEEDRGLRQFEEMR 429
Query: 389 PLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448
LL RGI +HHSGLLP++KELVE+LFQEGLV+ LFATETF++GLNMPA+TV+FT +K+
Sbjct: 430 SLLLRGIGIHHSGLLPILKELVEILFQEGLVRILFATETFSIGLNMPARTVLFTKAQKFS 489
Query: 449 GDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQME-------MNTLKD-------- 493
G++ R++ SGEY+QMS + I+++D+ ++ MN D
Sbjct: 490 GNNFRWLTSGEYMQMSGRAGRRGIDTKGLSIVILDQSIDEQAARCLMNGQADVLNSAFHL 549
Query: 494 ---MVLE----GQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAE 546
M+L + + E ++K SF+QFQ ++LP I +++ +L+ E S++ E V E
Sbjct: 550 SYGMILNLMRIEEISPEDILKKSFYQFQNMESLPLIKEELMQLKNEETSINIPNETAVKE 609
Query: 547 YHKLKLDIAQLEKKLMSEITRPERVLYYLGSGRLIKVR 584
+H LKL + + +++ +T P+ L YL SGRLI+++
Sbjct: 610 FHDLKLQLEKYGEEIQKVMTHPDNCLPYLQSGRLIQIK 647
Score = 492 (178.3 bits), Expect = 2.1e-191, Sum P(2) = 2.1e-191
Identities = 114/318 (35%), Positives = 185/318 (58%)
Query: 617 IVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIED 676
IV V L + +S IR+ +P +L +++ V E+ F + +P L+P++ M IE
Sbjct: 716 IVSVLLTAVCNISSIRIYMPRELNSNESKLRAYRRVNEVIEEFKE-IPYLDPLEHMHIES 774
Query: 677 PEVVDLVNQIEELEHKLFAHPLNK-SQDENQIRCFQRKAEVNHEIQQLKSKMRDSQ-IQK 734
+ + ++E LE KLF P K S+ + F++K + +I+ + +K+ +++ I +
Sbjct: 775 STLSLSLRKLEILEPKLFDSPYYKDSKHRAEYHEFRKKLNLRAQIKDISTKITNTEAIIQ 834
Query: 735 FRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 794
R ELK R RVL++LG + V+ +KGR AC I +GDELL+ EL+F G FN + ++A
Sbjct: 835 LR-ELKIRQRVLRRLGFCTLENVIDIKGRVACEITSGDELLLVELIFQGFFNQMPPEEIA 893
Query: 795 ALASCFIPVDKSS-EQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRP 853
A SCF+ DKS +NL+ K + E+A++IA + E KL+ N +Y+ +P
Sbjct: 894 AALSCFVYEDKSEVSTLNLKEPFKKMYLTIIEAAKRIATVSLESKLQFNESDYLHQ-FKP 952
Query: 854 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFA 913
+M+ + W GA+F E+ ++ ++EGSI+R+ RRLDE L QL AA +G L++K
Sbjct: 953 DIMEPVSLWINGASFQEICIVSKLYEGSIVRTFRRLDELLKQLEHAAIVLGNNELKEKSV 1012
Query: 914 AASESLRRGIMFSNSLYL 931
+ L R I+FS SLYL
Sbjct: 1013 LTEQKLHRDIIFSASLYL 1030
>GENEDB_PFALCIPARUM|PFF0100w [details] [associations]
symbol:PFF0100w "putative ATP dependent RNA
helicase" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL844505 HOGENOM:HOG000163047 KO:K12598
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_966011.1
ProteinModelPortal:C6KSM1 EnsemblProtists:PFF0100w:mRNA
GeneID:3885738 KEGG:pfa:PFF0100w EuPathDB:PlasmoDB:PF3D7_0602100
OMA:RGIVIIM ProtClustDB:CLSZ2433467 Uniprot:C6KSM1
Length = 1350
Score = 1286 (457.8 bits), Expect = 1.0e-168, Sum P(4) = 1.0e-168
Identities = 238/448 (53%), Positives = 323/448 (72%)
Query: 37 SCVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLV 96
+C+H+ P Y +H P+ A+TY FELD FQ+ S+ CLERNESVLV
Sbjct: 225 NCIHKCVRPQSY-------VHNEIKEPLIP---ARTYKFELDTFQKKSIECLERNESVLV 274
Query: 97 SAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLS 156
SAHTSAGKT +AEYAIA+ RDKQRVIYTSP+KALSNQKYR+L +EFKDVGL+TGD++++
Sbjct: 275 SAHTSAGKTVIAEYAIALGLRDKQRVIYTSPIKALSNQKYRDLGEEFKDVGLITGDISIN 334
Query: 157 PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKM 216
P AS +VMTTEILR MLYRGS + KEV WVIFDEIHYM+DR+RGV+WEE+II LP ++
Sbjct: 335 PEASIIVMTTEILRSMLYRGSSLTKEVKWVIFDEIHYMRDRDRGVIWEETIILLPLMVRF 394
Query: 217 VFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFR 276
+FLSAT+ N QFAEW+ + Q CH+VYTD+RPTPLQHY++P ++L+ DE + F+
Sbjct: 395 IFLSATIPNGIQFAEWVSSIKSQACHIVYTDYRPTPLQHYIYPTSSESVFLICDENKDFK 454
Query: 277 EDNFVKLQDTFLKQKIGGRRENXXXXXXXXXXXXXXXXX-DIFKIVKMIMERKFQPVIVF 335
+DNF+K + +K+K+ EN DI KIV+M R + P+I+F
Sbjct: 455 KDNFIKAVNV-IKEKMNTSEENHHQQHINKYTKKMRKTTYDIEKIVQMCHSRNYTPLIIF 513
Query: 336 SFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGI 395
+FS++ECE +A +M K+D + EK+ ++++++NA+ L ++DR+LP ++ +LPLL RGI
Sbjct: 514 AFSKKECEVNATAMHKIDLTSDTEKEVIKELYENAIRILADDDRSLPQVQFILPLLLRGI 573
Query: 396 AVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYI 455
+HH GLLP+IKE++E++FQE L+K LF+TETF+MG+NMPAKTVVFT++ K+DG R I
Sbjct: 574 GIHHGGLLPIIKEIIEIMFQESLLKVLFSTETFSMGINMPAKTVVFTSLTKFDGLEKRLI 633
Query: 456 GSGEYIQMSXXXXXXXXXXXXICIIMVD 483
SGEYIQM+ I IIM+D
Sbjct: 634 TSGEYIQMAGRAGRRGLDDRGIVIIMLD 661
Score = 315 (115.9 bits), Expect = 1.0e-168, Sum P(4) = 1.0e-168
Identities = 70/225 (31%), Positives = 130/225 (57%)
Query: 715 EVNHEIQQLKSKMRDSQIQK-FRDELKNRSRVLK------KLGHIDADGVVQLKGRAACL 767
EV++ ++ LK++ I+ + +KN R++ K H + + VV +KG+ A
Sbjct: 1128 EVSYNLENLKNEKDIKTIENSITEHIKNE-RIMNIKNETYKNNHEEKNYVVTMKGQIASA 1186
Query: 768 IDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRME-LAKPLQQLQES 826
I + DEL+++EL F+ F+ ++ + A SCF+ + +S++I + L + QQ+ ++
Sbjct: 1187 ILSVDELVISELFFSNFFSKYNYDYICAFLSCFVYDESTSKEITINDPILVEGYQQIIKT 1246
Query: 827 ARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSA 886
A +A NEC + +N+ +Y++ + +M + W++G +F E++ + I+EGSIIR+
Sbjct: 1247 ANHVATKMNECGMNINLKDYIDK-FKSAIMPIALLWARGHSFVEILSDSQIYEGSIIRTL 1305
Query: 887 RRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 931
RRLDE + Q+ A + + ++ + A+ LRRGI FS SLYL
Sbjct: 1306 RRLDELIRQMICAFRGINNDSMCETLTLATNKLRRGIPFSPSLYL 1350
Score = 63 (27.2 bits), Expect = 3.1e-142, Sum P(4) = 3.1e-142
Identities = 26/142 (18%), Positives = 67/142 (47%)
Query: 617 IVPVQLPLISTLSKIRLSV--PPDLRPLDARQSILLAVQELES--RFPQGLPKLNPVKDM 672
++ + + LS + LS+ P D + + ++I + + + + +P +NP M
Sbjct: 988 VISFNIKCVYQLSAVVLSIDKPFDKKNEEQIENIKTKYNTMVTCLKGEKNIPVINP-NQM 1046
Query: 673 KIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQI-RCFQRKAEVNHEIQQLKSKMRDSQ 731
I++ + +V ++ E+ + + L +++ N+ + + + + E L+S + +
Sbjct: 1047 GIKNETFISIVKNLKFHENIINKNKLLNNKNLNKYYQMYSKYVALQCEKNILESNIEKCR 1106
Query: 732 IQKFRDELKNRSRVLKKLGHID 753
+ ELKN +L+ L +I+
Sbjct: 1107 FIVLKKELKNMLVLLESLNYIE 1128
Score = 52 (23.4 bits), Expect = 1.0e-168, Sum P(4) = 1.0e-168
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 486 MEMNTLKDMVLEGQFTAEHVIKNSFHQFQYEKALPD--IGKKVSKLEE 531
M +N L+ +EG T E +I+ SF Q+Q +K L + KK K+EE
Sbjct: 690 MILNLLR---IEG-ITPEFMIERSFIQYQMKKNLSQKILAKK--KVEE 731
Score = 38 (18.4 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 131 LSNQKYRELHQEFKD 145
L+ K++E+ +EFK+
Sbjct: 794 LNADKHKEIKEEFKE 808
Score = 37 (18.1 bits), Expect = 1.0e-168, Sum P(4) = 1.0e-168
Identities = 7/40 (17%), Positives = 20/40 (50%)
Query: 544 VAEYHKLKLDIAQLEKKLMSEITRPERVLYYLGSGRLIKV 583
++ ++ +K + + + +T + + YL GRL+ +
Sbjct: 840 ISNFYTMKQKLIDVGETYRYILTMKKHITPYLSLGRLLYI 879
Score = 37 (18.1 bits), Expect = 7.6e-133, Sum P(2) = 7.6e-133
Identities = 22/111 (19%), Positives = 49/111 (44%)
Query: 647 SILLAVQELESRFPQGLPKLNPVK-DMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDEN 705
+++L + +E P+ + + + ++ MK + + ++EE ++F H N DEN
Sbjct: 689 NMILNLLRIEGITPEFMIERSFIQYQMKKNLSQKILAKKKVEEHIKQIFNHLTNIHLDEN 748
Query: 706 --QIRCFQRKAEVNHE-IQQLKSKMR--DSQIQKFRDELKNRSRVLKKLGH 751
+I + ++ + +Q+K+ S K +D N +L H
Sbjct: 749 NNEITKDELLTKIMYNNYEQIKNNQNLGTSSELKIKDTSSNDEVILNADKH 799
>UNIPROTKB|D4AE49 [details] [associations]
symbol:D4AE49 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR012961 Pfam:PF00271 Pfam:PF08148 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
GeneTree:ENSGT00690000102230 InterPro:IPR025696 Pfam:PF13234
IPI:IPI00776783 PRIDE:D4AE49 Ensembl:ENSRNOT00000060695
ArrayExpress:D4AE49 Uniprot:D4AE49
Length = 764
Score = 945 (337.7 bits), Expect = 1.0e-165, Sum P(2) = 1.0e-165
Identities = 180/316 (56%), Positives = 225/316 (71%)
Query: 194 MKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPL 253
M+D ERGVVWEE+II LP + VFLSAT+ NA QFAEWICHLHKQPCHV+YTD+RPTPL
Sbjct: 1 MRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPL 60
Query: 254 QHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENXXXXXXXXXXXXXXX 313
QHY+FP GG GL+LVVDE FREDNF + G +
Sbjct: 61 QHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVL---RDAG---DLAKGDQKGRKGGTKG 114
Query: 314 XXDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDC 373
++FKIVKMIMER FQPVI+FSFS+++CE +A+ M+KLDFNT EEK VE+VF NA+DC
Sbjct: 115 PSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDC 174
Query: 374 LNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLN 433
L++ED+ LP +E +LPLLKRGI +HH GLLP++KE +E+LF EGL+KALFATETFAMG+N
Sbjct: 175 LSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGIN 234
Query: 434 MPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTLKD 493
MPA+TV+FT +K+DG R+I SGEYIQMS I I+MVDE+M K
Sbjct: 235 MPARTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQ 294
Query: 494 MVLEGQ---FTAEHVI 506
++ +GQ +A H +
Sbjct: 295 LLKKGQGDKLSATHAL 310
Score = 689 (247.6 bits), Expect = 1.0e-165, Sum P(2) = 1.0e-165
Identities = 137/321 (42%), Positives = 209/321 (65%)
Query: 612 RGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKD 671
+G +VPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ D
Sbjct: 445 KGEMQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPIDD 504
Query: 672 MKIEDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDS 730
M I+D + ++ ++E EH++++HPL+ + E ++KA++ +I+ K +++ +
Sbjct: 505 MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKA 564
Query: 731 QIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH 790
+ DELK R L + G ++ KG C DELL+TE+MFNG FNDL
Sbjct: 565 RTVLQMDELKCRKPCLFRPGKAFLLDLIHRKGYHFCYKSCADELLLTEMMFNGLFNDLSS 624
Query: 791 HQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVEST 850
Q AL SCF+ + SSE L +LA PL+Q+QE A++IA++ E KLE++ + Y+ S+
Sbjct: 625 EQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYL-SS 683
Query: 851 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEK 910
+P LMDV+Y W+ GATFA + +MTD+FEGSIIR RRL+E L Q+ AA+A+G LE
Sbjct: 684 FKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELEN 743
Query: 911 KFAAASESLRRGIMFSNSLYL 931
KFA ++R I+F+ SLYL
Sbjct: 744 KFAEGITKIKRDIVFAASLYL 764
Score = 39 (18.8 bits), Expect = 4.7e-97, Sum P(2) = 4.7e-97
Identities = 19/71 (26%), Positives = 29/71 (40%)
Query: 795 ALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRP- 853
A SC IP D+ S + L K Q+ R E C L +D + P
Sbjct: 356 AQQSCRIPSDELSFYLTLSQSSLKADSQMWLHLRISRECLACCFLGREIDLPNSGELDPL 415
Query: 854 FLMDVIYCWSK 864
++++V+ SK
Sbjct: 416 YVVEVLLRCSK 426
>UNIPROTKB|G3MYJ7 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102230 EMBL:DAAA02050346 EMBL:DAAA02050343
EMBL:DAAA02050344 EMBL:DAAA02050345 Ensembl:ENSBTAT00000064767
Uniprot:G3MYJ7
Length = 605
Score = 1463 (520.1 bits), Expect = 6.9e-150, P = 6.9e-150
Identities = 299/550 (54%), Positives = 378/550 (68%)
Query: 2 EESLMAGKRKAPE---EDLHVTGTPEEESTKKQRNLTRSCVHEVAVPSGYALTKDEAIHG 58
+E + K + E EDL + + + C HEVA+P+ DE
Sbjct: 70 DEPIFGKKPRVEESITEDLSLADLMPRVKVQSVETV-EGCTHEVALPA------DEDYLP 122
Query: 59 TFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD 118
P G+ AK Y F LD FQR ++ C++ N+SVLVSAHTSAGKT AEYAIA+A R+
Sbjct: 123 L--KPRV-GKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALRE 179
Query: 119 KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSE 178
KQRVI+TSP+KALSNQKYRE+++EF+DVGLMTGDVT++P ASCLVMTTEILR MLYRGSE
Sbjct: 180 KQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSE 239
Query: 179 VLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHK 238
V++EVAWVIFDEIHYM+D ERGVVWEE+II LP + VFLSAT+ NA QFAEWICHLHK
Sbjct: 240 VMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHK 299
Query: 239 QPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRREN 298
QPCHV+YTD+RPTPLQHY+FP GG GL+LVVDE FREDNF + G +
Sbjct: 300 QPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVL--RDAG----D 353
Query: 299 XXXXXXXXXXXXXXXXXDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQE 358
++FKIVKMIMER FQPVI+FSFS+++CE +A+ M+KLDFNT E
Sbjct: 354 LAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDE 413
Query: 359 EKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGL 418
EK VE+VF NA+DCL++ED+ LP +E +LPLLKRGI +HH GLLP++KE +E+LF EGL
Sbjct: 414 EKKMVEEVFSNAIDCLSDEDKKLPQVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGL 473
Query: 419 VKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXIC 478
+KALFATETFAMG+NMPA+TV+FT +K+DG R+I SGEYIQMS I
Sbjct: 474 IKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIV 533
Query: 479 IIMVDEQME----MNTLK--------------DMVLE----GQFTAEHVIKNSFHQFQYE 516
I+MVDE+M LK +MVL + E++++ SF+QFQ+
Sbjct: 534 ILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHY 593
Query: 517 KALPDIGKKV 526
+A+P + + +
Sbjct: 594 RAIPGVVENI 603
>ZFIN|ZDB-GENE-010430-5 [details] [associations]
symbol:skiv2l "superkiller viralicidic activity 2 (S.
cerevisiae homolog)-like" species:7955 "Danio rerio" [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-010430-5 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GeneTree:ENSGT00690000102154 EMBL:FP102194 EMBL:FP067438
IPI:IPI00490616 Ensembl:ENSDART00000089609 OMA:TIMASAD Bgee:F1R881
Uniprot:F1R881
Length = 1249
Score = 967 (345.5 bits), Expect = 6.5e-138, Sum P(2) = 6.5e-138
Identities = 197/439 (44%), Positives = 278/439 (63%)
Query: 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALS 132
Y FELD FQ+ ++ LE ++SV V+AHTSAGKT VAEYAIA++ + R IYTSP+KALS
Sbjct: 315 YPFELDVFQKQAILRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMTRTIYTSPIKALS 374
Query: 133 NQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192
NQK+R+ F DVGL+TGDV L+P SCL+MTTEILR MLY GSEV++++ WVIFDE+H
Sbjct: 375 NQKFRDFKNTFGDVGLLTGDVQLNPEGSCLIMTTEILRSMLYNGSEVIRDLEWVIFDEVH 434
Query: 193 YMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTP 252
Y+ D ERGVVWEE +I LP + ++ LSAT+ NA +F+EWI + K+ +V+ T RP P
Sbjct: 435 YINDAERGVVWEEVLIMLPEHVSIILLSATVPNAVEFSEWIGRIKKRHIYVISTIKRPVP 494
Query: 253 LQHYVFPVGGSG-----LYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENXXXXXXXXX 307
L+HY++ G S L++++D F + + K++ ++
Sbjct: 495 LEHYLY-TGNSTKTQKELFMLLDATGNFLTKGYYAAVEA-KKERTSKHAQSFGTKNVSQH 552
Query: 308 XXXXXXXXDIFK-IVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQV 366
+++ ++ + +R+ PV+ F+FSR C+++A S++ LD T EK +
Sbjct: 553 NTTASQDRAVWQTLLNYLSQRQQTPVVAFTFSRTRCDENARSLTSLDLTTSIEKSEIHSF 612
Query: 367 FQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATE 426
Q ++ L DR LP I LM LLKRGI VHHSG+LP++KE++E+LF GLVK LFATE
Sbjct: 613 LQKSLTRLRGGDRQLPQILLMRDLLKRGIGVHHSGILPILKEVIEMLFSRGLVKVLFATE 672
Query: 427 TFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQM 486
TFAMG+NMPA+TVVF +++K DG R + GEYIQM+ II+ +
Sbjct: 673 TFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGTVIILCKAGV 732
Query: 487 -EMNTLKDMVLEGQFTAEH 504
+M L M+L G+ T H
Sbjct: 733 HDMGELHSMML-GKPTVLH 750
Score = 404 (147.3 bits), Expect = 6.5e-138, Sum P(2) = 6.5e-138
Identities = 98/290 (33%), Positives = 163/290 (56%)
Query: 646 QSILLAVQELESRFPQ----GLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFA-HPLNK 700
Q+I A QEL R + G+ L+PV D+ ++ +VV+ V + L+ L H ++
Sbjct: 962 QAISTATQEL-LRLAEANMGGMTVLDPVNDLHLKGVDVVEGVMRQRVLQDSLKDFHCIHS 1020
Query: 701 SQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQL 760
Q Q + V E+ +L + D + E R +VL+ L ++D+ G VQL
Sbjct: 1021 PTFSEQFTRVQERMSVQEELDKLLFLVSDQSLTLL-PEYHQRIKVLEALQYVDSSGAVQL 1079
Query: 761 KGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPL 820
KGR AC I + ELL+TEL+F T + L + AAL SC + + + ++ L + +
Sbjct: 1080 KGRVACQISS-HELLLTELLFENTLSPLAPEESAALLSCLVFTQNTQIEPHITNTLQEGI 1138
Query: 821 QQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEG 880
Q+ A++I ++Q +C + +++V + + L +V+YCW++G FAE+ Q+TD+ EG
Sbjct: 1139 NQVLAVAQRIGDLQRDCGIAQTAEDFV-AQFKFGLTEVVYCWARGMPFAEIAQLTDVQEG 1197
Query: 881 SIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLY 930
+I+R +RLDE L ++R AA+ VG+ L K AS ++RR I+F+ SLY
Sbjct: 1198 TIVRCIQRLDEVLKEVRQAARIVGDSVLGSKMERASLAIRRDIVFTASLY 1247
Score = 38 (18.4 bits), Expect = 2.1e-31, Sum P(3) = 2.1e-31
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 189 DEIHYMKDRERGVVWEESIIFLPPAIK 215
++I + E + +E+ ++ +PP +K
Sbjct: 172 EQIKNKSELEEDIDFEKDLMTVPPGLK 198
Score = 37 (18.1 bits), Expect = 2.1e-31, Sum P(3) = 2.1e-31
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 554 IAQLEKK---LMSEITRPERVLYYLGSGRLIKVRE 585
I +++K+ ++S I RP + +YL +G K ++
Sbjct: 475 IGRIKKRHIYVISTIKRPVPLEHYLYTGNSTKTQK 509
>UNIPROTKB|E2RSD6 [details] [associations]
symbol:SKIV2L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0055087 "Ski complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 KO:K12599 OMA:TRLDETC GeneTree:ENSGT00690000102154
CTD:6499 EMBL:AAEX03008222 RefSeq:XP_538841.2
ProteinModelPortal:E2RSD6 Ensembl:ENSCAFT00000001053 GeneID:481720
KEGG:cfa:481720 NextBio:20856463 Uniprot:E2RSD6
Length = 1246
Score = 945 (337.7 bits), Expect = 5.6e-137, Sum P(3) = 5.6e-137
Identities = 186/396 (46%), Positives = 257/396 (64%)
Query: 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALS 132
+SFE D FQ+ ++ LER++SV V+AHTSAGKT VAEYAIA+A + R IYTSP+KALS
Sbjct: 307 WSFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALS 366
Query: 133 NQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192
NQK+R+ F DVGL+TGDV L P ASCL+MTTEILR MLY GS+V++++ WVIFDE+H
Sbjct: 367 NQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVH 426
Query: 193 YMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTP 252
Y+ D ERGVVWEE +I LP + ++ LSAT+ NA +FA+WI L ++ +V+ T RP P
Sbjct: 427 YINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVARPVP 486
Query: 253 LQHYVF----PVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENXXXXXXXXXX 308
L+HY+F P L+L++D + F + + K+++ +
Sbjct: 487 LEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEA-KKERMSKHAQTFGAKQPTHQG 545
Query: 309 XXXXXXXDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQ 368
++ + R PV+VF+FSR C++ A ++ LD T EK + Q
Sbjct: 546 GPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQ 605
Query: 369 NAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETF 428
+ L DR LP + M LL RG+ VHHSG+LP++KE+VE+LF GLVK LFATETF
Sbjct: 606 RCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETF 665
Query: 429 AMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMS 464
AMG+NMPA+TVVF +++K DG + R + GEY+QM+
Sbjct: 666 AMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMA 701
Score = 364 (133.2 bits), Expect = 5.6e-137, Sum P(3) = 5.6e-137
Identities = 97/291 (33%), Positives = 161/291 (55%)
Query: 647 SILLAVQEL---ESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF-AHPLNKSQ 702
++ AVQEL +P G P L+PV D++++D VV+ + +LE ++ A ++ +
Sbjct: 960 AVTTAVQELLRLAQAYPAGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIWGAQCVHSPR 1019
Query: 703 DENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKG 762
Q + + ++ E+++L+ + D + E R VL+ LG++D G V+L G
Sbjct: 1020 FSAQYVKLRERMQIQKEMERLRFLLSDQSLLLL-PEYHQRVEVLRTLGYVDEAGTVKLAG 1078
Query: 763 RAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQINLRMELAKP 819
R AC + + ELL+TELMF+ + L ++AAL S C P D EQ L L +
Sbjct: 1079 RVACAMSS-HELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPG-EQ--LPSTLKQG 1134
Query: 820 LQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFE 879
+++++ AR+I E+Q C L V+E+V + L++V+Y W++G F+E+ ++ E
Sbjct: 1135 VERVRAVARRIGEVQVACGLNQTVEEFV-GELNFGLVEVVYEWARGMPFSELAGLSGTPE 1193
Query: 880 GSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLY 930
G ++R +RL E LR AA+ VGE L K A+ LRR I+F+ SLY
Sbjct: 1194 GLVVRCIQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLY 1244
Score = 68 (29.0 bits), Expect = 5.6e-137, Sum P(3) = 5.6e-137
Identities = 22/90 (24%), Positives = 45/90 (50%)
Query: 503 EHVIKNSFHQFQ-------YEKALPDIGKKVSKLEEEAASLDASGE-AEVAEYHKLKLDI 554
E ++K SF +F +E+AL ++ K++ LEE D +G+ +++EY+ ++
Sbjct: 763 EDMMKRSFSEFPSRKDSKAHEQALDELTKRLGALEEP----DTTGQLVDLSEYYGWGEEL 818
Query: 555 AQLEKKLMSEITRPERVLYYLGSGRLIKVR 584
+ + I L L +GR++ V+
Sbjct: 819 TETRSLIQRRIMESVNGLKSLSAGRVVVVK 848
Score = 42 (19.8 bits), Expect = 2.2e-28, Sum P(2) = 2.2e-28
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 632 RLSVPPD------LRPLD----ARQSILLAVQELESRFPQGLPKLNP 668
RL++PP LRP++ R +L ES P GLP P
Sbjct: 6 RLALPPPDPLDLPLRPVELGCTGRWELLNVPGAPESTLPHGLPPCAP 52
>RGD|1303059 [details] [associations]
symbol:Skiv2l "superkiller viralicidic activity 2-like (S.
cerevisiae )" species:10116 "Rattus norvegicus" [GO:0055087 "Ski
complex" evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
RGD:1303059 GO:GO:0005524 GO:GO:0003676 EMBL:BX883045
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 HOGENOM:HOG000163048
KO:K12599 CTD:6499 HOVERGEN:HBG060025 OrthoDB:EOG47H5P5
IPI:IPI00417365 RefSeq:NP_998724.1 UniGene:Rn.138027
ProteinModelPortal:Q6MG76 IntAct:Q6MG76 PhosphoSite:Q6MG76
PRIDE:Q6MG76 GeneID:294260 KEGG:rno:294260 UCSC:RGD:1303059
InParanoid:Q6MG76 NextBio:637849 ArrayExpress:Q6MG76
Genevestigator:Q6MG76 Uniprot:Q6MG76
Length = 1241
Score = 940 (336.0 bits), Expect = 1.5e-136, Sum P(3) = 1.5e-136
Identities = 184/396 (46%), Positives = 258/396 (65%)
Query: 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALS 132
++FE D FQ+ ++ LE+++SV V+AHTSAGKT VAEYAIA+A + R IYTSP+KALS
Sbjct: 301 WAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALS 360
Query: 133 NQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192
NQK+R+ F DVGL+TGDV L P ASCL+MTTEILR MLY GS+V++++ WVIFDE+H
Sbjct: 361 NQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVH 420
Query: 193 YMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTP 252
Y+ D ERGVVWEE +I LP + ++ LSAT+ NA +FA+WI L ++ +V+ T RP P
Sbjct: 421 YINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVARPVP 480
Query: 253 LQHYVF----PVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENXXXXXXXXXX 308
L+HY+F P L+L++D + F + + K+++ +
Sbjct: 481 LEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEA-KKERMSKHAQTFGAKQPTHQG 539
Query: 309 XXXXXXXDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQ 368
++ + R PV+VF+FSR C++ A ++ LD T EK + Q
Sbjct: 540 GPAQDRGVYLALLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQ 599
Query: 369 NAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETF 428
+ L DR LP + M LL+RG+ VHHSG+LP++KE+VE+LF GLVK LFATETF
Sbjct: 600 RCLARLRGSDRQLPQVLHMSELLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETF 659
Query: 429 AMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMS 464
AMG+NMPA+TVVF +++K DG + R + GEY+QM+
Sbjct: 660 AMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMA 695
Score = 358 (131.1 bits), Expect = 1.5e-136, Sum P(3) = 1.5e-136
Identities = 96/301 (31%), Positives = 161/301 (53%)
Query: 637 PDLRPLDARQSILLAVQEL---ESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKL 693
P R ++ AVQEL +P G P L+P+ D++++D VV+ + +LE +
Sbjct: 945 PKFRKDPPLAAVTTAVQELLRLAQAYPAGPPTLDPINDLQLKDVAVVEGGLRARKLEELI 1004
Query: 694 F-AHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHI 752
A ++ + Q Q + ++ E+++L+ + D + E R VL+ LG++
Sbjct: 1005 RGAQCVHSPRFPAQYVKLQERMQIQKEMERLRFLLSDQSLLLL-PEYHQRVEVLRTLGYV 1063
Query: 753 DADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQ 809
D G V+L GR AC + + ELL+TELMF+ + L ++AAL S C P D +
Sbjct: 1064 DEAGTVKLAGRVACAMSS-HELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGDQ- 1121
Query: 810 INLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFA 869
L L + +++++ A++I E+Q C L V+E+V + L++V+Y W++G F+
Sbjct: 1122 --LPSTLKQGVERVKAVAKRIGEVQVACGLNQTVEEFV-GELNFGLVEVVYEWARGMPFS 1178
Query: 870 EVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSL 929
E+ ++ EG ++R +RL E LR AA+ VGE L K A+ LRR I+F+ SL
Sbjct: 1179 ELAGLSGTPEGLVVRCIQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASL 1238
Query: 930 Y 930
Y
Sbjct: 1239 Y 1239
Score = 75 (31.5 bits), Expect = 1.5e-136, Sum P(3) = 1.5e-136
Identities = 24/90 (26%), Positives = 44/90 (48%)
Query: 503 EHVIKNSFHQFQ-------YEKALPDIGKKVSKLEEEAASLDASGE-AEVAEYHKLKLDI 554
E ++K SF +F +E+AL D+ K++ LEE D +G+ A++ EY+ ++
Sbjct: 757 EDMMKRSFSEFPSRKDSKAHEQALADLTKRLGALEEP----DVTGQLADLPEYYSWAEEL 812
Query: 555 AQLEKKLMSEITRPERVLYYLGSGRLIKVR 584
+ + I L L GR++ V+
Sbjct: 813 TETRNMIQRRIMESVNGLKSLSVGRVVVVK 842
>UNIPROTKB|F1LP39 [details] [associations]
symbol:Skiv2l "Protein Skiv2l" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 RGD:1303059 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087
OMA:TRLDETC GeneTree:ENSGT00690000102154 IPI:IPI00417365
Ensembl:ENSRNOT00000000481 Uniprot:F1LP39
Length = 1206
Score = 940 (336.0 bits), Expect = 1.5e-136, Sum P(3) = 1.5e-136
Identities = 184/396 (46%), Positives = 258/396 (65%)
Query: 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALS 132
++FE D FQ+ ++ LE+++SV V+AHTSAGKT VAEYAIA+A + R IYTSP+KALS
Sbjct: 266 WAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALS 325
Query: 133 NQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192
NQK+R+ F DVGL+TGDV L P ASCL+MTTEILR MLY GS+V++++ WVIFDE+H
Sbjct: 326 NQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVH 385
Query: 193 YMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTP 252
Y+ D ERGVVWEE +I LP + ++ LSAT+ NA +FA+WI L ++ +V+ T RP P
Sbjct: 386 YINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVARPVP 445
Query: 253 LQHYVF----PVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENXXXXXXXXXX 308
L+HY+F P L+L++D + F + + K+++ +
Sbjct: 446 LEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEA-KKERMSKHAQTFGAKQPTHQG 504
Query: 309 XXXXXXXDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQ 368
++ + R PV+VF+FSR C++ A ++ LD T EK + Q
Sbjct: 505 GPAQDRGVYLALLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQ 564
Query: 369 NAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETF 428
+ L DR LP + M LL+RG+ VHHSG+LP++KE+VE+LF GLVK LFATETF
Sbjct: 565 RCLARLRGSDRQLPQVLHMSELLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETF 624
Query: 429 AMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMS 464
AMG+NMPA+TVVF +++K DG + R + GEY+QM+
Sbjct: 625 AMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMA 660
Score = 358 (131.1 bits), Expect = 1.5e-136, Sum P(3) = 1.5e-136
Identities = 96/301 (31%), Positives = 161/301 (53%)
Query: 637 PDLRPLDARQSILLAVQEL---ESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKL 693
P R ++ AVQEL +P G P L+P+ D++++D VV+ + +LE +
Sbjct: 910 PKFRKDPPLAAVTTAVQELLRLAQAYPAGPPTLDPINDLQLKDVAVVEGGLRARKLEELI 969
Query: 694 F-AHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHI 752
A ++ + Q Q + ++ E+++L+ + D + E R VL+ LG++
Sbjct: 970 RGAQCVHSPRFPAQYVKLQERMQIQKEMERLRFLLSDQSLLLL-PEYHQRVEVLRTLGYV 1028
Query: 753 DADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQ 809
D G V+L GR AC + + ELL+TELMF+ + L ++AAL S C P D +
Sbjct: 1029 DEAGTVKLAGRVACAMSS-HELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGDQ- 1086
Query: 810 INLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFA 869
L L + +++++ A++I E+Q C L V+E+V + L++V+Y W++G F+
Sbjct: 1087 --LPSTLKQGVERVKAVAKRIGEVQVACGLNQTVEEFV-GELNFGLVEVVYEWARGMPFS 1143
Query: 870 EVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSL 929
E+ ++ EG ++R +RL E LR AA+ VGE L K A+ LRR I+F+ SL
Sbjct: 1144 ELAGLSGTPEGLVVRCIQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASL 1203
Query: 930 Y 930
Y
Sbjct: 1204 Y 1204
Score = 75 (31.5 bits), Expect = 1.5e-136, Sum P(3) = 1.5e-136
Identities = 24/90 (26%), Positives = 44/90 (48%)
Query: 503 EHVIKNSFHQFQ-------YEKALPDIGKKVSKLEEEAASLDASGE-AEVAEYHKLKLDI 554
E ++K SF +F +E+AL D+ K++ LEE D +G+ A++ EY+ ++
Sbjct: 722 EDMMKRSFSEFPSRKDSKAHEQALADLTKRLGALEEP----DVTGQLADLPEYYSWAEEL 777
Query: 555 AQLEKKLMSEITRPERVLYYLGSGRLIKVR 584
+ + I L L GR++ V+
Sbjct: 778 TETRNMIQRRIMESVNGLKSLSVGRVVVVK 807
>UNIPROTKB|E1BMS0 [details] [associations]
symbol:LOC100139548 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0055087 "Ski complex" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 OMA:TRLDETC GeneTree:ENSGT00690000102154
EMBL:DAAA02055371 IPI:IPI00690289 RefSeq:XP_003583920.1
RefSeq:XP_003587743.1 Ensembl:ENSBTAT00000007339 GeneID:100139548
KEGG:bta:100139548 Uniprot:E1BMS0
Length = 1246
Score = 942 (336.7 bits), Expect = 8.1e-136, Sum P(3) = 8.1e-136
Identities = 185/396 (46%), Positives = 257/396 (64%)
Query: 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALS 132
++FE D FQ+ ++ LER++SV V+AHTSAGKT VAEYAIA+A + R IYTSP+KALS
Sbjct: 307 WAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALS 366
Query: 133 NQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192
NQK+R+ F DVGL+TGDV L P ASCL+MTTEILR MLY GS+V++++ WVIFDE+H
Sbjct: 367 NQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVH 426
Query: 193 YMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTP 252
Y+ D ERGVVWEE +I LP + ++ LSAT+ NA +FA+WI L ++ +V+ T RP P
Sbjct: 427 YINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVARPVP 486
Query: 253 LQHYVF----PVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENXXXXXXXXXX 308
L+HY+F P L+L++D + F + + K+++ +
Sbjct: 487 LEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEA-KKERMSKHAQTFGAKQPTHQG 545
Query: 309 XXXXXXXDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQ 368
++ + R PV+VF+FSR C++ A ++ LD T EK + Q
Sbjct: 546 GPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQ 605
Query: 369 NAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETF 428
+ L DR LP + M LL RG+ VHHSG+LP++KE+VE+LF GLVK LFATETF
Sbjct: 606 RCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETF 665
Query: 429 AMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMS 464
AMG+NMPA+TVVF +++K DG + R + GEY+QM+
Sbjct: 666 AMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMA 701
Score = 354 (129.7 bits), Expect = 8.1e-136, Sum P(3) = 8.1e-136
Identities = 94/291 (32%), Positives = 158/291 (54%)
Query: 647 SILLAVQEL---ESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF-AHPLNKSQ 702
++ AVQEL P G P L+PV D++++D VV+ + +LE + A ++ +
Sbjct: 960 AVTTAVQELLRLAQAHPTGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIRGAQCVHSPR 1019
Query: 703 DENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKG 762
Q + + ++ E+++L+ + D + E R VL+ LG++D G V+L G
Sbjct: 1020 FPAQYLKLRERMQIQKEMERLRFLLSDQSLLLL-PEYHQRVEVLRTLGYVDEAGTVKLAG 1078
Query: 763 RAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQINLRMELAKP 819
R AC + + ELL+TELMF+ + L ++AAL S C P D + L L +
Sbjct: 1079 RVACAMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDPGDQ---LPSTLKQG 1134
Query: 820 LQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFE 879
+++++ A++I E+Q C L V+E+V + L++V+Y W++G F+E+ ++ E
Sbjct: 1135 VERVRTVAKRIGEVQAACGLNQTVEEFV-GELNFGLVEVVYEWARGMPFSELAGLSGTPE 1193
Query: 880 GSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLY 930
G ++R +RL E LR AA+ VGE L K A+ LRR I+F+ SLY
Sbjct: 1194 GLVVRCIQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLY 1244
Score = 70 (29.7 bits), Expect = 8.1e-136, Sum P(3) = 8.1e-136
Identities = 22/90 (24%), Positives = 45/90 (50%)
Query: 503 EHVIKNSFHQFQ-------YEKALPDIGKKVSKLEEEAASLDASGE-AEVAEYHKLKLDI 554
E ++K SF +F +E+AL ++ KK+ LEE + +G+ ++ EY+ ++
Sbjct: 763 EDMMKRSFSEFPSRKDSKAHEQALAELTKKLGALEEP----EVTGQLVDLPEYYSWGEEL 818
Query: 555 AQLEKKLMSEITRPERVLYYLGSGRLIKVR 584
+ ++ I L L +GR++ V+
Sbjct: 819 TETRSQIQHRIIESVNGLKSLSAGRVVVVK 848
Score = 37 (18.1 bits), Expect = 3.4e-29, Sum P(3) = 3.4e-29
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 195 KDRERGVVWEESIIFLPPAIK 215
++ E + +E+ ++ LPP K
Sbjct: 171 EEAEEEIDFEKDLLTLPPGFK 191
>UNIPROTKB|B4DM01 [details] [associations]
symbol:SKIV2L "cDNA FLJ57529, highly similar to Helicase
SKI2W (EC 3.6.1.-)" species:9606 "Homo sapiens" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL662849 eggNOG:COG4581
InterPro:IPR025696 Pfam:PF13234 UniGene:Hs.89864 HGNC:HGNC:10898
HOVERGEN:HBG060025 OrthoDB:EOG47H5P5 ChiTaRS:SKIV2L EMBL:AK297230
IPI:IPI01014021 SMR:B4DM01 STRING:B4DM01 Ensembl:ENST00000551164
Uniprot:B4DM01
Length = 1088
Score = 941 (336.3 bits), Expect = 1.3e-135, Sum P(3) = 1.3e-135
Identities = 186/396 (46%), Positives = 258/396 (65%)
Query: 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALS 132
++FE D FQ+ ++ LER++SV V+AHTSAGKT VAEYAIA+A + R IYTSP+KALS
Sbjct: 149 WAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALS 208
Query: 133 NQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192
NQK+R+ F DVGL+TGDV L P ASCL+MTTEILR MLY GS+V++++ WVIFDE+H
Sbjct: 209 NQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVH 268
Query: 193 YMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTP 252
Y+ D ERGVVWEE +I LP + ++ LSAT+ NA +FA+WI L ++ +V+ T RP P
Sbjct: 269 YINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVP 328
Query: 253 LQHYVFPVGGS---G-LYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENXXXXXXXXXX 308
L+HY+F S G L+L++D + F + + K+++ +
Sbjct: 329 LEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEA-KKERMSKHAQTFGAKQPTHQG 387
Query: 309 XXXXXXXDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQ 368
++ + R PV+VF+FSR C++ A ++ LD T EK + Q
Sbjct: 388 GPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQ 447
Query: 369 NAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETF 428
+ L DR LP + M LL RG+ VHHSG+LP++KE+VE+LF GLVK LFATETF
Sbjct: 448 RCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETF 507
Query: 429 AMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMS 464
AMG+NMPA+TVVF +++K DG + R + GEY+QM+
Sbjct: 508 AMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMA 543
Score = 354 (129.7 bits), Expect = 1.3e-135, Sum P(3) = 1.3e-135
Identities = 94/291 (32%), Positives = 158/291 (54%)
Query: 647 SILLAVQEL---ESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF-AHPLNKSQ 702
++ AVQEL P G P L+PV D++++D VV+ + +LE + A ++ +
Sbjct: 802 AVTTAVQELLRLAQAHPAGPPTLDPVNDLQLKDMSVVEGGLRARKLEELIQGAQCVHSPR 861
Query: 703 DENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKG 762
Q + + ++ E+++L+ + D + E R VL+ LG++D G V+L G
Sbjct: 862 FPAQYLKLRERMQIQKEMERLRFLLSDQSLLLL-PEYHQRVEVLRTLGYVDEAGTVKLAG 920
Query: 763 RAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQINLRMELAKP 819
R AC + + ELL+TELMF+ + L ++AAL S C P D + N L +
Sbjct: 921 RVACAMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNT---LKQG 976
Query: 820 LQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFE 879
+++++ A++I E+Q C L V+E+V + L++V+Y W++G F+E+ ++ E
Sbjct: 977 IERVRAVAKRIGEVQVACGLNQTVEEFV-GELNFGLVEVVYEWARGMPFSELAGLSGTPE 1035
Query: 880 GSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLY 930
G ++R +RL E LR AA+ VGE L K A+ LRR I+F+ SLY
Sbjct: 1036 GLVVRCIQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLY 1086
Score = 69 (29.3 bits), Expect = 1.3e-135, Sum P(3) = 1.3e-135
Identities = 22/90 (24%), Positives = 45/90 (50%)
Query: 503 EHVIKNSFHQFQ-------YEKALPDIGKKVSKLEEEAASLDASGE-AEVAEYHKLKLDI 554
E ++K SF +F +E+AL ++ K++ LEE D +G+ ++ EY+ ++
Sbjct: 605 EDMMKRSFSEFPSRKDSKAHEQALAELTKRLGALEEP----DMTGQLVDLPEYYSWGEEL 660
Query: 555 AQLEKKLMSEITRPERVLYYLGSGRLIKVR 584
+ + + I L L +GR++ V+
Sbjct: 661 TETQHMIQRRIMESVNGLKSLSAGRVVVVK 690
Score = 39 (18.8 bits), Expect = 2.8e-26, Sum P(3) = 2.8e-26
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 554 IAQLEKK---LMSEITRPERVLYYLGSGRLIKVR 584
I +L+++ ++S +TRP + +YL +G K +
Sbjct: 309 IGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQ 342
Score = 37 (18.1 bits), Expect = 2.2e-29, Sum P(3) = 2.2e-29
Identities = 5/26 (19%), Positives = 16/26 (61%)
Query: 190 EIHYMKDRERGVVWEESIIFLPPAIK 215
+++ ++ E + +E+ ++ +PP K
Sbjct: 8 DLNTREEAEEEIDFEKDLLTIPPGFK 33
>UNIPROTKB|F8VNU1 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL844853 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI01022196
SMR:F8VNU1 Ensembl:ENST00000546742 Ensembl:ENST00000547054
Ensembl:ENST00000550012 Ensembl:ENST00000550640 UCSC:uc011ghk.1
Uniprot:F8VNU1
Length = 1088
Score = 941 (336.3 bits), Expect = 1.3e-135, Sum P(3) = 1.3e-135
Identities = 186/396 (46%), Positives = 258/396 (65%)
Query: 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALS 132
++FE D FQ+ ++ LER++SV V+AHTSAGKT VAEYAIA+A + R IYTSP+KALS
Sbjct: 149 WAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALS 208
Query: 133 NQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192
NQK+R+ F DVGL+TGDV L P ASCL+MTTEILR MLY GS+V++++ WVIFDE+H
Sbjct: 209 NQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVH 268
Query: 193 YMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTP 252
Y+ D ERGVVWEE +I LP + ++ LSAT+ NA +FA+WI L ++ +V+ T RP P
Sbjct: 269 YINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVP 328
Query: 253 LQHYVFPVGGS---G-LYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENXXXXXXXXXX 308
L+HY+F S G L+L++D + F + + K+++ +
Sbjct: 329 LEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEA-KKERMSKHAQTFGAKQPTHQG 387
Query: 309 XXXXXXXDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQ 368
++ + R PV+VF+FSR C++ A ++ LD T EK + Q
Sbjct: 388 GPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQ 447
Query: 369 NAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETF 428
+ L DR LP + M LL RG+ VHHSG+LP++KE+VE+LF GLVK LFATETF
Sbjct: 448 RCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETF 507
Query: 429 AMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMS 464
AMG+NMPA+TVVF +++K DG + R + GEY+QM+
Sbjct: 508 AMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMA 543
Score = 354 (129.7 bits), Expect = 1.3e-135, Sum P(3) = 1.3e-135
Identities = 94/291 (32%), Positives = 158/291 (54%)
Query: 647 SILLAVQEL---ESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF-AHPLNKSQ 702
++ AVQEL P G P L+PV D++++D VV+ + +LE + A ++ +
Sbjct: 802 AVTTAVQELLRLAQAHPAGPPTLDPVNDLQLKDMSVVEGGLRARKLEELIQGAQCVHSPR 861
Query: 703 DENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKG 762
Q + + ++ E+++L+ + D + E R VL+ LG++D G V+L G
Sbjct: 862 FPAQYLKLRERMQIQKEMERLRFLLSDQSLLLL-PEYHQRVEVLRTLGYVDEAGTVKLAG 920
Query: 763 RAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQINLRMELAKP 819
R AC + + ELL+TELMF+ + L ++AAL S C P D + N L +
Sbjct: 921 RVACAMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNT---LKQG 976
Query: 820 LQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFE 879
+++++ A++I E+Q C L V+E+V + L++V+Y W++G F+E+ ++ E
Sbjct: 977 IERVRAVAKRIGEVQVACGLNQTVEEFV-GELNFGLVEVVYEWARGMPFSELAGLSGTPE 1035
Query: 880 GSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLY 930
G ++R +RL E LR AA+ VGE L K A+ LRR I+F+ SLY
Sbjct: 1036 GLVVRCIQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLY 1086
Score = 69 (29.3 bits), Expect = 1.3e-135, Sum P(3) = 1.3e-135
Identities = 22/90 (24%), Positives = 45/90 (50%)
Query: 503 EHVIKNSFHQFQ-------YEKALPDIGKKVSKLEEEAASLDASGE-AEVAEYHKLKLDI 554
E ++K SF +F +E+AL ++ K++ LEE D +G+ ++ EY+ ++
Sbjct: 605 EDMMKRSFSEFPSRKDSKAHEQALAELTKRLGALEEP----DMTGQLVDLPEYYSWGEEL 660
Query: 555 AQLEKKLMSEITRPERVLYYLGSGRLIKVR 584
+ + + I L L +GR++ V+
Sbjct: 661 TETQHMIQRRIMESVNGLKSLSAGRVVVVK 690
Score = 39 (18.8 bits), Expect = 2.8e-26, Sum P(3) = 2.8e-26
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 554 IAQLEKK---LMSEITRPERVLYYLGSGRLIKVR 584
I +L+++ ++S +TRP + +YL +G K +
Sbjct: 309 IGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQ 342
Score = 37 (18.1 bits), Expect = 2.2e-29, Sum P(3) = 2.2e-29
Identities = 5/26 (19%), Positives = 16/26 (61%)
Query: 190 EIHYMKDRERGVVWEESIIFLPPAIK 215
+++ ++ E + +E+ ++ +PP K
Sbjct: 8 DLNTREEAEEEIDFEKDLLTIPPGFK 33
>UNIPROTKB|Q15477 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0055087 "Ski
complex" evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=TAS] Reactome:REACT_17015 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 EMBL:AF019413 EMBL:AL662849 EMBL:AL645922
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC EMBL:U09877 EMBL:X98378
EMBL:Z48796 IPI:IPI00414819 PIR:S56752 RefSeq:NP_008860.4
UniGene:Hs.89864 ProteinModelPortal:Q15477 SMR:Q15477 IntAct:Q15477
STRING:Q15477 PhosphoSite:Q15477 DMDM:3123284 PaxDb:Q15477
PRIDE:Q15477 DNASU:6499 Ensembl:ENST00000375394
Ensembl:ENST00000383336 Ensembl:ENST00000412823
Ensembl:ENST00000421789 Ensembl:ENST00000429465
Ensembl:ENST00000448219 GeneID:6499 KEGG:hsa:6499 UCSC:uc003nyn.1
CTD:6499 GeneCards:GC06P031926 H-InvDB:HIX0005742
H-InvDB:HIX0166115 H-InvDB:HIX0166390 H-InvDB:HIX0166908
H-InvDB:HIX0167165 H-InvDB:HIX0167404 HGNC:HGNC:10898 MIM:600478
MIM:614602 neXtProt:NX_Q15477 Orphanet:84064 PharmGKB:PA35798
HOVERGEN:HBG060025 InParanoid:Q15477 OrthoDB:EOG47H5P5
PhylomeDB:Q15477 ChiTaRS:SKIV2L GenomeRNAi:6499 NextBio:25263
ArrayExpress:Q15477 Bgee:Q15477 CleanEx:HS_SKIV2L
Genevestigator:Q15477 Uniprot:Q15477
Length = 1246
Score = 941 (336.3 bits), Expect = 1.3e-135, Sum P(3) = 1.3e-135
Identities = 186/396 (46%), Positives = 258/396 (65%)
Query: 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALS 132
++FE D FQ+ ++ LER++SV V+AHTSAGKT VAEYAIA+A + R IYTSP+KALS
Sbjct: 307 WAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALS 366
Query: 133 NQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192
NQK+R+ F DVGL+TGDV L P ASCL+MTTEILR MLY GS+V++++ WVIFDE+H
Sbjct: 367 NQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVH 426
Query: 193 YMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTP 252
Y+ D ERGVVWEE +I LP + ++ LSAT+ NA +FA+WI L ++ +V+ T RP P
Sbjct: 427 YINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVP 486
Query: 253 LQHYVFPVGGS---G-LYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENXXXXXXXXXX 308
L+HY+F S G L+L++D + F + + K+++ +
Sbjct: 487 LEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEA-KKERMSKHAQTFGAKQPTHQG 545
Query: 309 XXXXXXXDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQ 368
++ + R PV+VF+FSR C++ A ++ LD T EK + Q
Sbjct: 546 GPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQ 605
Query: 369 NAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETF 428
+ L DR LP + M LL RG+ VHHSG+LP++KE+VE+LF GLVK LFATETF
Sbjct: 606 RCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETF 665
Query: 429 AMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMS 464
AMG+NMPA+TVVF +++K DG + R + GEY+QM+
Sbjct: 666 AMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMA 701
Score = 354 (129.7 bits), Expect = 1.3e-135, Sum P(3) = 1.3e-135
Identities = 94/291 (32%), Positives = 158/291 (54%)
Query: 647 SILLAVQEL---ESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF-AHPLNKSQ 702
++ AVQEL P G P L+PV D++++D VV+ + +LE + A ++ +
Sbjct: 960 AVTTAVQELLRLAQAHPAGPPTLDPVNDLQLKDMSVVEGGLRARKLEELIQGAQCVHSPR 1019
Query: 703 DENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKG 762
Q + + ++ E+++L+ + D + E R VL+ LG++D G V+L G
Sbjct: 1020 FPAQYLKLRERMQIQKEMERLRFLLSDQSLLLL-PEYHQRVEVLRTLGYVDEAGTVKLAG 1078
Query: 763 RAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQINLRMELAKP 819
R AC + + ELL+TELMF+ + L ++AAL S C P D + N L +
Sbjct: 1079 RVACAMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNT---LKQG 1134
Query: 820 LQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFE 879
+++++ A++I E+Q C L V+E+V + L++V+Y W++G F+E+ ++ E
Sbjct: 1135 IERVRAVAKRIGEVQVACGLNQTVEEFV-GELNFGLVEVVYEWARGMPFSELAGLSGTPE 1193
Query: 880 GSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLY 930
G ++R +RL E LR AA+ VGE L K A+ LRR I+F+ SLY
Sbjct: 1194 GLVVRCIQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLY 1244
Score = 69 (29.3 bits), Expect = 1.3e-135, Sum P(3) = 1.3e-135
Identities = 22/90 (24%), Positives = 45/90 (50%)
Query: 503 EHVIKNSFHQFQ-------YEKALPDIGKKVSKLEEEAASLDASGE-AEVAEYHKLKLDI 554
E ++K SF +F +E+AL ++ K++ LEE D +G+ ++ EY+ ++
Sbjct: 763 EDMMKRSFSEFPSRKDSKAHEQALAELTKRLGALEEP----DMTGQLVDLPEYYSWGEEL 818
Query: 555 AQLEKKLMSEITRPERVLYYLGSGRLIKVR 584
+ + + I L L +GR++ V+
Sbjct: 819 TETQHMIQRRIMESVNGLKSLSAGRVVVVK 848
Score = 39 (18.8 bits), Expect = 5.5e-26, Sum P(3) = 5.5e-26
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 554 IAQLEKK---LMSEITRPERVLYYLGSGRLIKVR 584
I +L+++ ++S +TRP + +YL +G K +
Sbjct: 467 IGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQ 500
Score = 37 (18.1 bits), Expect = 4.3e-29, Sum P(3) = 4.3e-29
Identities = 5/26 (19%), Positives = 16/26 (61%)
Query: 190 EIHYMKDRERGVVWEESIIFLPPAIK 215
+++ ++ E + +E+ ++ +PP K
Sbjct: 166 DLNTREEAEEEIDFEKDLLTIPPGFK 191
>UNIPROTKB|F5H7B0 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL662849 EMBL:AL645922
InterPro:IPR025696 Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L
IPI:IPI01021910 SMR:F5H7B0 Ensembl:ENST00000544581
Ensembl:ENST00000546549 Uniprot:F5H7B0
Length = 1053
Score = 941 (336.3 bits), Expect = 1.3e-135, Sum P(3) = 1.3e-135
Identities = 186/396 (46%), Positives = 258/396 (65%)
Query: 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALS 132
++FE D FQ+ ++ LER++SV V+AHTSAGKT VAEYAIA+A + R IYTSP+KALS
Sbjct: 114 WAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALS 173
Query: 133 NQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192
NQK+R+ F DVGL+TGDV L P ASCL+MTTEILR MLY GS+V++++ WVIFDE+H
Sbjct: 174 NQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVH 233
Query: 193 YMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTP 252
Y+ D ERGVVWEE +I LP + ++ LSAT+ NA +FA+WI L ++ +V+ T RP P
Sbjct: 234 YINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVP 293
Query: 253 LQHYVFPVGGS---G-LYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENXXXXXXXXXX 308
L+HY+F S G L+L++D + F + + K+++ +
Sbjct: 294 LEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEA-KKERMSKHAQTFGAKQPTHQG 352
Query: 309 XXXXXXXDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQ 368
++ + R PV+VF+FSR C++ A ++ LD T EK + Q
Sbjct: 353 GPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQ 412
Query: 369 NAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETF 428
+ L DR LP + M LL RG+ VHHSG+LP++KE+VE+LF GLVK LFATETF
Sbjct: 413 RCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETF 472
Query: 429 AMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMS 464
AMG+NMPA+TVVF +++K DG + R + GEY+QM+
Sbjct: 473 AMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMA 508
Score = 354 (129.7 bits), Expect = 1.3e-135, Sum P(3) = 1.3e-135
Identities = 94/291 (32%), Positives = 158/291 (54%)
Query: 647 SILLAVQEL---ESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF-AHPLNKSQ 702
++ AVQEL P G P L+PV D++++D VV+ + +LE + A ++ +
Sbjct: 767 AVTTAVQELLRLAQAHPAGPPTLDPVNDLQLKDMSVVEGGLRARKLEELIQGAQCVHSPR 826
Query: 703 DENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKG 762
Q + + ++ E+++L+ + D + E R VL+ LG++D G V+L G
Sbjct: 827 FPAQYLKLRERMQIQKEMERLRFLLSDQSLLLL-PEYHQRVEVLRTLGYVDEAGTVKLAG 885
Query: 763 RAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQINLRMELAKP 819
R AC + + ELL+TELMF+ + L ++AAL S C P D + N L +
Sbjct: 886 RVACAMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNT---LKQG 941
Query: 820 LQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFE 879
+++++ A++I E+Q C L V+E+V + L++V+Y W++G F+E+ ++ E
Sbjct: 942 IERVRAVAKRIGEVQVACGLNQTVEEFV-GELNFGLVEVVYEWARGMPFSELAGLSGTPE 1000
Query: 880 GSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLY 930
G ++R +RL E LR AA+ VGE L K A+ LRR I+F+ SLY
Sbjct: 1001 GLVVRCIQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLY 1051
Score = 69 (29.3 bits), Expect = 1.3e-135, Sum P(3) = 1.3e-135
Identities = 22/90 (24%), Positives = 45/90 (50%)
Query: 503 EHVIKNSFHQFQ-------YEKALPDIGKKVSKLEEEAASLDASGE-AEVAEYHKLKLDI 554
E ++K SF +F +E+AL ++ K++ LEE D +G+ ++ EY+ ++
Sbjct: 570 EDMMKRSFSEFPSRKDSKAHEQALAELTKRLGALEEP----DMTGQLVDLPEYYSWGEEL 625
Query: 555 AQLEKKLMSEITRPERVLYYLGSGRLIKVR 584
+ + + I L L +GR++ V+
Sbjct: 626 TETQHMIQRRIMESVNGLKSLSAGRVVVVK 655
Score = 39 (18.8 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 554 IAQLEKK---LMSEITRPERVLYYLGSGRLIKVR 584
I +L+++ ++S +TRP + +YL +G K +
Sbjct: 274 IGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQ 307
>UNIPROTKB|F8VS23 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL844853 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI00945125
SMR:F8VS23 Ensembl:ENST00000546908 Ensembl:ENST00000552714
Ensembl:ENST00000552746 Ensembl:ENST00000553255 UCSC:uc011ghl.1
Uniprot:F8VS23
Length = 1053
Score = 941 (336.3 bits), Expect = 1.3e-135, Sum P(3) = 1.3e-135
Identities = 186/396 (46%), Positives = 258/396 (65%)
Query: 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALS 132
++FE D FQ+ ++ LER++SV V+AHTSAGKT VAEYAIA+A + R IYTSP+KALS
Sbjct: 114 WAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALS 173
Query: 133 NQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192
NQK+R+ F DVGL+TGDV L P ASCL+MTTEILR MLY GS+V++++ WVIFDE+H
Sbjct: 174 NQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVH 233
Query: 193 YMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTP 252
Y+ D ERGVVWEE +I LP + ++ LSAT+ NA +FA+WI L ++ +V+ T RP P
Sbjct: 234 YINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVP 293
Query: 253 LQHYVFPVGGS---G-LYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENXXXXXXXXXX 308
L+HY+F S G L+L++D + F + + K+++ +
Sbjct: 294 LEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEA-KKERMSKHAQTFGAKQPTHQG 352
Query: 309 XXXXXXXDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQ 368
++ + R PV+VF+FSR C++ A ++ LD T EK + Q
Sbjct: 353 GPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQ 412
Query: 369 NAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETF 428
+ L DR LP + M LL RG+ VHHSG+LP++KE+VE+LF GLVK LFATETF
Sbjct: 413 RCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETF 472
Query: 429 AMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMS 464
AMG+NMPA+TVVF +++K DG + R + GEY+QM+
Sbjct: 473 AMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMA 508
Score = 354 (129.7 bits), Expect = 1.3e-135, Sum P(3) = 1.3e-135
Identities = 94/291 (32%), Positives = 158/291 (54%)
Query: 647 SILLAVQEL---ESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF-AHPLNKSQ 702
++ AVQEL P G P L+PV D++++D VV+ + +LE + A ++ +
Sbjct: 767 AVTTAVQELLRLAQAHPAGPPTLDPVNDLQLKDMSVVEGGLRARKLEELIQGAQCVHSPR 826
Query: 703 DENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKG 762
Q + + ++ E+++L+ + D + E R VL+ LG++D G V+L G
Sbjct: 827 FPAQYLKLRERMQIQKEMERLRFLLSDQSLLLL-PEYHQRVEVLRTLGYVDEAGTVKLAG 885
Query: 763 RAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQINLRMELAKP 819
R AC + + ELL+TELMF+ + L ++AAL S C P D + N L +
Sbjct: 886 RVACAMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNT---LKQG 941
Query: 820 LQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFE 879
+++++ A++I E+Q C L V+E+V + L++V+Y W++G F+E+ ++ E
Sbjct: 942 IERVRAVAKRIGEVQVACGLNQTVEEFV-GELNFGLVEVVYEWARGMPFSELAGLSGTPE 1000
Query: 880 GSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLY 930
G ++R +RL E LR AA+ VGE L K A+ LRR I+F+ SLY
Sbjct: 1001 GLVVRCIQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLY 1051
Score = 69 (29.3 bits), Expect = 1.3e-135, Sum P(3) = 1.3e-135
Identities = 22/90 (24%), Positives = 45/90 (50%)
Query: 503 EHVIKNSFHQFQ-------YEKALPDIGKKVSKLEEEAASLDASGE-AEVAEYHKLKLDI 554
E ++K SF +F +E+AL ++ K++ LEE D +G+ ++ EY+ ++
Sbjct: 570 EDMMKRSFSEFPSRKDSKAHEQALAELTKRLGALEEP----DMTGQLVDLPEYYSWGEEL 625
Query: 555 AQLEKKLMSEITRPERVLYYLGSGRLIKVR 584
+ + + I L L +GR++ V+
Sbjct: 626 TETQHMIQRRIMESVNGLKSLSAGRVVVVK 655
Score = 39 (18.8 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 554 IAQLEKK---LMSEITRPERVLYYLGSGRLIKVR 584
I +L+++ ++S +TRP + +YL +G K +
Sbjct: 274 IGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQ 307
>UNIPROTKB|F1RQW4 [details] [associations]
symbol:SKIV2L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0055087 "Ski complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 OMA:TRLDETC GeneTree:ENSGT00690000102154
EMBL:CT956038 Ensembl:ENSSSCT00000001566 ArrayExpress:F1RQW4
Uniprot:F1RQW4
Length = 1246
Score = 945 (337.7 bits), Expect = 5.7e-135, Sum P(3) = 5.7e-135
Identities = 185/396 (46%), Positives = 258/396 (65%)
Query: 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALS 132
++FE D FQ+ ++ LER++SV V+AHTSAGKT VAEYAIA+A + R IYTSP+KALS
Sbjct: 307 WAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALS 366
Query: 133 NQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192
NQK+R+ F DVGL+TGDV L P ASCL+MTTEILR MLY GS+V++++ WVIFDE+H
Sbjct: 367 NQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVH 426
Query: 193 YMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTP 252
Y+ D ERGVVWEE +I LP + ++ LSAT+ NA +FA+WI L ++ +V+ T RP P
Sbjct: 427 YINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVARPVP 486
Query: 253 LQHYVF----PVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENXXXXXXXXXX 308
L+HY+F P L+L++D + F + + K+++ +
Sbjct: 487 LEHYLFTGNSPKTQGELFLLLDSRGSFHTKGYYAAVEA-KKERMSKHAQTFGAKQPTNQG 545
Query: 309 XXXXXXXDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQ 368
++ + R+ PV+VF+FSR C++ A ++ LD T EK + Q
Sbjct: 546 GPAQDRGVYLSLLASLRAREQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQ 605
Query: 369 NAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETF 428
+ L DR LP + M LL RG+ VHHSG+LP++KE+VE+LF GLVK LFATETF
Sbjct: 606 RCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETF 665
Query: 429 AMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMS 464
AMG+NMPA+TVVF +++K DG + R + GEY+QM+
Sbjct: 666 AMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMA 701
Score = 348 (127.6 bits), Expect = 5.7e-135, Sum P(3) = 5.7e-135
Identities = 96/292 (32%), Positives = 159/292 (54%)
Query: 647 SILLAVQELESRFPQ----GLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF-AHPLNKS 701
++ AVQEL R Q G P L+PV D++++D VV+ + +LE + A ++
Sbjct: 960 AVTTAVQEL-LRLAQAHLAGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIRGAQCVHSP 1018
Query: 702 QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLK 761
+ Q + + ++ E+++L+ + D + E R VL+ LG++D G V+L
Sbjct: 1019 RFPAQYVKLRERMQIQKEMERLRFLLSDQSLLLL-PEYHQRVEVLRTLGYVDEAGTVKLA 1077
Query: 762 GRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQINLRMELAK 818
GR AC + + ELL+TELMF+ + L ++AAL S C P D + L L +
Sbjct: 1078 GRVACAMSS-HELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGDQ---LPSTLKQ 1133
Query: 819 PLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIF 878
++++Q A++I E+Q C L V+E+V + L++V+Y W++G F+E+ ++
Sbjct: 1134 GVERVQAVAKRIGEVQVACGLNQTVEEFV-GELNFGLVEVVYEWARGMPFSELAGLSGTP 1192
Query: 879 EGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLY 930
EG ++R +RL E LR AA+ VGE L K A+ LRR I+F+ SLY
Sbjct: 1193 EGLVVRCIQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLY 1244
Score = 65 (27.9 bits), Expect = 5.7e-135, Sum P(3) = 5.7e-135
Identities = 22/90 (24%), Positives = 43/90 (47%)
Query: 503 EHVIKNSFHQFQ-------YEKALPDIGKKVSKLEEEAASLDASGE-AEVAEYHKLKLDI 554
E ++K SF +F +E+AL ++ K++ LEE D +G+ ++ EY+ ++
Sbjct: 763 EDMMKRSFSEFPSRKDSKAHEQALAELTKRLGALEEP----DVTGQLVDLPEYYSWGEEL 818
Query: 555 AQLEKKLMSEITRPERVLYYLGSGRLIKVR 584
+ + I L L GR++ V+
Sbjct: 819 TETRSLIQRRIMESVNGLKSLSVGRVVVVK 848
>DICTYBASE|DDB_G0277211 [details] [associations]
symbol:DDB_G0277211 "superkiller viralicidic activity
2-like protein" species:44689 "Dictyostelium discoideum"
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0277211 GO:GO:0005524
GO:GO:0003676 EMBL:AAFI02000019 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 InterPro:IPR025696
Pfam:PF13234 KO:K12599 OMA:TRLDETC RefSeq:XP_642686.1
ProteinModelPortal:Q86K90 EnsemblProtists:DDB0233454 GeneID:8620875
KEGG:ddi:DDB_G0277211 InParanoid:Q86K90 Uniprot:Q86K90
Length = 1378
Score = 973 (347.6 bits), Expect = 8.8e-135, Sum P(2) = 8.8e-135
Identities = 205/499 (41%), Positives = 307/499 (61%)
Query: 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALS 132
Y F+LD FQ+ ++ +E+ ESV ++AHTSAGKT +AEYAIAMA ++ R IYTSP+KALS
Sbjct: 430 YPFDLDSFQKQAIVHMEQGESVFITAHTSAGKTVIAEYAIAMAAKNMTRAIYTSPIKALS 489
Query: 133 NQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192
NQK+R+ F DVGL+TGDV++SP++SCLV+TTEILR MLY+G+++++++ WVIFDE+H
Sbjct: 490 NQKFRDFKNTFNDVGLITGDVSISPSSSCLVLTTEILRSMLYKGADLIRDIEWVIFDEVH 549
Query: 193 YMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTP 252
Y+ D ERGVVWEE II LPP +KMVFLSAT+SN +FA+WI + P +V+ T RP P
Sbjct: 550 YLNDLERGVVWEEVIIMLPPYVKMVFLSATVSNPLEFAQWIGRTKQLPIYVIGTTKRPIP 609
Query: 253 LQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKI----GGRRENXXXXXXXXXX 308
L+HY+ L+ +VD F + ++ K GG
Sbjct: 610 LEHYIHTPSNE-LFKIVDSNRNFLPSGYNSAYNSLYKTDNNKGGGGGGRGGHNQQQQQRG 668
Query: 309 XXXXXXXDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQ-EEKDTVEQVF 367
K++ + +++ PVI+FSFS+ +C+++A S+ + TQ EK +
Sbjct: 669 GSGNNISGWSKLINTLKDKQQLPVIIFSFSKNKCQEYAGSLGQSVNLTQGNEKSQIRVFI 728
Query: 368 QNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATET 427
+ ++ L E+D++LP I M LL+RGI VHH GLLP++KELVE+LF + LVK LFATET
Sbjct: 729 EQSLGRLCEDDKSLPQILQMKELLERGIGVHHGGLLPIVKELVEILFSKSLVKVLFATET 788
Query: 428 FAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQM- 486
FAMG+NMPAKTVV+++ +K DG + R + GEY QMS II + +
Sbjct: 789 FAMGVNMPAKTVVYSSTRKHDGITFRDLIPGEYTQMSGRAGRRGLDKVGTVIITYWKDIP 848
Query: 487 EMNTLKDMVLEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAE 546
E T++ M+L + +++ +PD KV + + + S + S + E+
Sbjct: 849 EQATIESMILGTPSRLNSQFRLTYNMILNLLRVPDF--KVEDMIKRSFS-EFSSQKELPG 905
Query: 547 YHKLKLDIAQLEKKLMSEI 565
K +++ Q ++K ++++
Sbjct: 906 IEK-QIEKLQQQQKQLAQV 923
Score = 373 (136.4 bits), Expect = 8.8e-135, Sum P(2) = 8.8e-135
Identities = 85/289 (29%), Positives = 165/289 (57%)
Query: 646 QSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVV---DLVNQIEELEHKLFAHPLNKSQ 702
Q +L ++E P G ++P+K +K++D + V D + IE+L + H +
Sbjct: 1094 QQLLRLIEEYP--LPLGPKSIDPIKQLKLKDVDFVSTYDHLQSIEKLIPESKCHKCPRLH 1151
Query: 703 DENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKG 762
D + +++ ++ + I+ K D + K + R +L +LG+ID + V LKG
Sbjct: 1152 DHYEQT--EKRYQLQYAIRDAKYTASDENL-KLMPQFNIRLDILHELGYIDDENTVTLKG 1208
Query: 763 RAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQ 822
R + I+T ++L++TEL+F F +L+ +V ++ SC I +K + Q +L L + Q
Sbjct: 1209 RVSREINTCEDLVITELIFENAFINLEPSEVVSVLSCLIFQEKDAVQPSLTPRLEEAKQN 1268
Query: 823 LQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSI 882
L ++A K +++++ L+V D+ +E+T++ LM V+Y W++G F ++ +T++ EGSI
Sbjct: 1269 LIKTAEKTYKVESDKGLDVVPDDKLETTLKFGLMQVVYEWARGTPFNDICTLTNVLEGSI 1328
Query: 883 IRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 931
+R+ R+ E ++R AA+ +G+ L +K A ++R I+F++SLY+
Sbjct: 1329 VRAITRIGETCQEVRNAARVIGDTKLLQKMEEAMRLIKRDIVFTSSLYV 1377
Score = 47 (21.6 bits), Expect = 2.3e-100, Sum P(2) = 2.3e-100
Identities = 12/48 (25%), Positives = 29/48 (60%)
Query: 803 VDKSSEQINLRMELA---KPLQQLQESARKIAEIQNECKL-EVNVDEY 846
+ +S + + + EL K +++LQ+ +++A++ +C L E ++D Y
Sbjct: 890 IKRSFSEFSSQKELPGIEKQIEKLQQQQKQLAQV--DCILGEPDIDHY 935
Score = 39 (18.8 bits), Expect = 1.6e-99, Sum P(2) = 1.6e-99
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 729 DSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRA 764
+ QI+K + + K ++V LG D D +L +A
Sbjct: 907 EKQIEKLQQQQKQLAQVDCILGEPDIDHYYKLFSQA 942
>TAIR|locus:2075566 [details] [associations]
symbol:AT3G46960 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0005773
"vacuole" evidence=IDA] [GO:0006813 "potassium ion transport"
evidence=IMP] [GO:0035864 "response to potassium ion" evidence=IMP]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0031048
"chromatin silencing by small RNA" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005773
EMBL:CP002686 GO:GO:0003676 GO:GO:0006813 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 KO:K12599 OMA:TRLDETC IPI:IPI00544785
RefSeq:NP_190280.5 UniGene:At.28750 UniGene:At.48743
ProteinModelPortal:F4JAA5 SMR:F4JAA5 PRIDE:F4JAA5
EnsemblPlants:AT3G46960.1 GeneID:823849 KEGG:ath:AT3G46960
GO:GO:0035864 Uniprot:F4JAA5
Length = 1347
Score = 581 (209.6 bits), Expect = 9.8e-127, Sum P(4) = 9.8e-127
Identities = 116/223 (52%), Positives = 154/223 (69%)
Query: 68 EMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127
+MA + FELD FQ+ ++ CLE+ ESV V+AHTSAGKT VAEYA A+A + R +YT+P
Sbjct: 352 DMAIEFPFELDNFQKEAICCLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAP 411
Query: 128 LKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVI 187
+K +SNQKYR+ +F DVGL+TGDV++ P ASCL+MTTEILR MLYRG+++++++ WVI
Sbjct: 412 IKTISNQKYRDFCGKF-DVGLLTGDVSIRPEASCLIMTTEILRSMLYRGADIIRDIEWVI 470
Query: 188 FDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTD 247
FDE+HY+ D ERGVVWEE II LP I V LSAT+ N +FA+WI ++ V T
Sbjct: 471 FDEVHYVNDVERGVVWEEVIIMLPRHINFVLLSATVPNTFEFADWIGRTKQKEIRVTGTT 530
Query: 248 FRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQ 290
RP PL+H +F G LY V E E F +D+ K+
Sbjct: 531 KRPVPLEHCLFYSGE--LYKVC-ENEVFLSKGIKDAKDSQKKK 570
Score = 419 (152.6 bits), Expect = 9.8e-127, Sum P(4) = 9.8e-127
Identities = 97/289 (33%), Positives = 172/289 (59%)
Query: 649 LLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIR 708
LL ++ ++FP P L+PVKD+K++D E+V+ + L K+ +NK ++
Sbjct: 1065 LLDLKSDGNKFP---PALDPVKDLKLKDAELVETYYKWTNLLQKM---SMNKCHGCVKL- 1117
Query: 709 CFQRKAEVNHEIQQLKSKMRDSQIQKFRDEL------KNRSRVLKKLGHIDADGVVQLKG 762
+ ++ EI++ K+ ++D + Q + L + R VLK +G ID D VVQ+KG
Sbjct: 1118 --EEHMKLAREIKKHKTDLKDLEFQMSDEALLQMPAFQGRIDVLKNIGCIDDDLVVQIKG 1175
Query: 763 RAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQ 822
R AC +++G+EL+ T +F F +L+ + A+ S F+ K++ L +LAK Q+
Sbjct: 1176 RVACEMNSGEELICTVCLFENQFEELEPEEAVAIMSAFVFQQKNTSAPTLTPKLAKAKQR 1235
Query: 823 LQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSI 882
L ++A ++ E+Q + L+++ +EY + ++ L++V+Y W+KG FAE+ ++TD+ EG I
Sbjct: 1236 LYDTAIRLGELQAQYNLQIDPEEYAQENLKFGLVEVVYEWAKGTPFAEICELTDVPEGLI 1295
Query: 883 IRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 931
+R+ RLDE + + AA +G L KK AAS +++R I+F+ SLY+
Sbjct: 1296 VRTIVRLDETCREFKNAAAIMGNSALHKKMDAASNAIKRDIVFAASLYV 1344
Score = 345 (126.5 bits), Expect = 9.8e-127, Sum P(4) = 9.8e-127
Identities = 72/194 (37%), Positives = 112/194 (57%)
Query: 320 IVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDR 379
++ + + PV+VF FS+ C++ A +++ D + EK + A L DR
Sbjct: 640 LINKLSKMSLLPVVVFCFSKNYCDRCADALTGTDLTSSSEKSEIRVFCDKAFSRLKGSDR 699
Query: 380 NLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTV 439
NLP + + LL RGI VHH+GLLP++KE+VE+LF G++K LF+TETFAMG+N PA+TV
Sbjct: 700 NLPQVLRLQSLLHRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTV 759
Query: 440 VFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMV-DEQMEMNTLKDMV--- 495
VF A++K+DG R + GEY QM+ ++M DE + + L+ ++
Sbjct: 760 VFDALRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVVVMCRDEVPDESDLRRVIVGS 819
Query: 496 ---LEGQFTAEHVI 506
LE QF +++
Sbjct: 820 ATRLESQFRLTYIM 833
Score = 66 (28.3 bits), Expect = 9.8e-127, Sum P(4) = 9.8e-127
Identities = 16/88 (18%), Positives = 41/88 (46%)
Query: 499 QFTAEHVIKNSFHQFQYEKALPDIGKKVS-KLEEEAASLDA-SGEAEVAEYHKLKLDIAQ 556
+ E ++K SF +F +K LP+ + + K ++ GE + +Y+ + ++ +
Sbjct: 842 ELKVEDMLKRSFAEFHAQKKLPEKQQLLMIKRSLPTKHIECIKGEPAIEDYYDMYMEANE 901
Query: 557 LEKKLMSEITRPERVLYYLGSGRLIKVR 584
K+ + + +L GR++ ++
Sbjct: 902 YNNKMSEAVMQSPYAQSFLVQGRVVVMK 929
Score = 47 (21.6 bits), Expect = 3.5e-53, Sum P(2) = 3.5e-53
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 340 RECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCL 374
RE ++H + L+F +E FQ +D L
Sbjct: 1125 REIKKHKTDLKDLEFQMSDEALLQMPAFQGRIDVL 1159
>POMBASE|SPCC550.03c [details] [associations]
symbol:SPCC550.03c "Ski complex RNA helicase Ski2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006402 "mRNA catabolic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0055087 "Ski complex" evidence=ISO]
[GO:0071276 "cellular response to cadmium ion" evidence=IMP]
[GO:0071585 "detoxification of cadmium ion" evidence=IMP]
[GO:2000765 "regulation of cytoplasmic translation" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC550.03c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:2000765
EMBL:CU329672 GO:GO:0071276 GO:GO:0071585 GO:GO:0003723
GO:GO:0006402 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0003724 eggNOG:COG4581 GO:GO:0055087 PIR:T41378
RefSeq:NP_588095.1 ProteinModelPortal:O59801 STRING:O59801
EnsemblFungi:SPCC550.03c.1 GeneID:2538841 KEGG:spo:SPCC550.03c
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
NextBio:20800023 Uniprot:O59801
Length = 1213
Score = 595 (214.5 bits), Expect = 4.6e-123, Sum P(4) = 4.6e-123
Identities = 112/222 (50%), Positives = 158/222 (71%)
Query: 68 EMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127
EMA + FELD FQ+ ++ LE +SV V+AHTSAGKT VAEYAIA+A + + IYTSP
Sbjct: 272 EMALDFPFELDNFQKEAIYHLEMGDSVFVAAHTSAGKTVVAEYAIALAQKHMTKAIYTSP 331
Query: 128 LKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVI 187
+KALSNQK+R+ +F+DVG++TGDV ++P SCL+MTTEILR MLYRG++++++V +VI
Sbjct: 332 IKALSNQKFRDFKHKFEDVGILTGDVQVNPEGSCLLMTTEILRSMLYRGADLIRDVEFVI 391
Query: 188 FDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTD 247
FDE+HY+ D ERGVVWEE II LPP + ++ LSAT+ N +FA W+ K+ +V+ T
Sbjct: 392 FDEVHYVNDLERGVVWEEVIIMLPPHVTLILLSATVPNTKEFASWVGRTKKKNIYVISTL 451
Query: 248 FRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLK 289
RP PL+HY++ ++ +VD+ +F D + D K
Sbjct: 452 KRPVPLEHYLWVK--QNMFKIVDQHGRFLMDGYKSANDALKK 491
Score = 383 (139.9 bits), Expect = 4.6e-123, Sum P(4) = 4.6e-123
Identities = 79/178 (44%), Positives = 113/178 (63%)
Query: 320 IVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDR 379
++ + ++ PVIVF FS++ CE++ +++ D N +EK V V + AV L +EDR
Sbjct: 541 LIGHLHKQNLLPVIVFVFSKKRCEEYVDTLTNRDLNNHQEKSEVHVVIEKAVARLKKEDR 600
Query: 380 NLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTV 439
LP I M +L RG+AVHH GLLP+IKE+VE+LFQ GLVK LFATETFAMG+NMPAK+V
Sbjct: 601 LLPQIGRMREMLSRGLAVHHGGLLPIIKEIVEILFQRGLVKVLFATETFAMGVNMPAKSV 660
Query: 440 VFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQM-EMNTLKDMVL 496
VF+ +K DG + R + GEY Q S II+ ++ + +L+ M++
Sbjct: 661 VFSGTQKHDGRNFRDLLPGEYTQCSGRAGRRGLDVTGTVIILSRSELPDTASLRHMIM 718
Score = 342 (125.4 bits), Expect = 4.6e-123, Sum P(4) = 4.6e-123
Identities = 83/261 (31%), Positives = 138/261 (52%)
Query: 673 KIEDPEVVDLVNQIEELEHKLFAHPLNKSQDE-NQIRCFQRKAEVNHEIQQLKSKMRDSQ 731
K+ D E + + L++KL +P+ + + ++ E+ I L S + D
Sbjct: 954 KVRDFEFCEAFEKRNFLQNKLSGNPIISTPNFLTHFALAYQEYELESNIDNLSSYISDQN 1013
Query: 732 IQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHH 791
++ D + R +VL++LG+IDA+ V LKGR AC I++ EL++TEL+ + D
Sbjct: 1014 LELLPD-YEQRIKVLQELGYIDAERTVLLKGRVACEINSTSELVLTELILENSLADFSCE 1072
Query: 792 QVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECK-LEVNVDEYVEST 850
+ AL S F+ +K+ + + L K + + A K+ +IQ + L N ES
Sbjct: 1073 ETIALLSAFVFDEKTEVEPTISPHLQKGKEMILSVAEKVNQIQEHYQVLYFNEGNDFESQ 1132
Query: 851 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEK 910
R LM+V Y W++G +F + +TD+ EGSI+R+ RLDE L + R AA+ VG+ ++
Sbjct: 1133 PRFGLMEVCYEWARGMSFNRITDLTDVLEGSIVRTIIRLDEVLRECRGAARVVGDSSMYT 1192
Query: 911 KFAAASESLRRGIMFSNSLYL 931
K +RR I+F SLY+
Sbjct: 1193 KMEECQNLIRRNIVFCPSLYM 1213
Score = 47 (21.6 bits), Expect = 4.6e-123, Sum P(4) = 4.6e-123
Identities = 11/52 (21%), Positives = 26/52 (50%)
Query: 485 QMEMNTLKDMVLEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASL 536
++ N + +++ E +IK SF + + +P +K+ EE+ ++L
Sbjct: 729 RLTYNMILNLLRVETLRIEDMIKRSFSENVNQTLVPQHEEKIKSFEEKLSAL 780
Score = 40 (19.1 bits), Expect = 7.3e-26, Sum P(3) = 7.3e-26
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 395 IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAM 430
+A H S V+ E L Q+ + KA++ + A+
Sbjct: 300 VAAHTSAGKTVVAEYAIALAQKHMTKAIYTSPIKAL 335
>ASPGD|ASPL0000004985 [details] [associations]
symbol:AN6007 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:BN001301 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000102 GO:GO:0008026 eggNOG:COG4581
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
RefSeq:XP_663611.1 ProteinModelPortal:Q5B0C3 STRING:Q5B0C3
EnsemblFungi:CADANIAT00007011 GeneID:2871132 KEGG:ani:AN6007.2
Uniprot:Q5B0C3
Length = 1293
Score = 604 (217.7 bits), Expect = 3.3e-121, Sum P(4) = 3.3e-121
Identities = 115/230 (50%), Positives = 162/230 (70%)
Query: 68 EMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127
+MA+ + FELD FQ+ +V LE +SV V+AHTSAGKT VAEYAIA+A + + IYTSP
Sbjct: 314 DMAREWPFELDTFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALAAKHMTKAIYTSP 373
Query: 128 LKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVI 187
+KALSNQK+R+ F DVG++TGDV ++P ASCL+MTTEILR MLYRG++++++V +VI
Sbjct: 374 IKALSNQKFRDFKNTFDDVGILTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVI 433
Query: 188 FDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTD 247
FDE+HY+ D ERGVVWEE II LP + ++ LSAT+ N +FA W+ K+ +V+ T
Sbjct: 434 FDEVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTQEFASWVGRTKKKDIYVISTA 493
Query: 248 FRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFL-KQKIGGRR 296
RP PL+HY++ G + +VD ++F E + + D K KI ++
Sbjct: 494 KRPVPLEHYLW--AGKDKFKIVDSNKRFLESGWKQADDIISGKDKIKAQK 541
Score = 374 (136.7 bits), Expect = 3.3e-121, Sum P(4) = 3.3e-121
Identities = 91/247 (36%), Positives = 139/247 (56%)
Query: 319 KIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEED 378
++V+ + + P +F FS++ CEQ+A S+S DF EK + + ++ L +ED
Sbjct: 617 QVVQHLRKENLLPACIFVFSKKRCEQNADSLSNQDFCNASEKSLIHITIEKSLTRLKQED 676
Query: 379 RNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKT 438
R LP I + LL RGIAVHH GLLP++KE+VE+LF + LVK LFATETFAMGLN+P +T
Sbjct: 677 RTLPQILRLRELLSRGIAVHHGGLLPIMKEIVEILFAKTLVKVLFATETFAMGLNLPTRT 736
Query: 439 VVFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIM---VDEQMEMNTLKDMV 495
VVF+ +K DG R + GEY QM+ I++ DE L+ M+
Sbjct: 737 VVFSGFRKHDGKGFRDLLPGEYTQMAGRAGRRGLDNVGYVIVVNSGKDEAPPAGALRKMI 796
Query: 496 LEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEE--EAASLDASGEAEVAEYHK-LKL 552
L G T +++ F + Y L + + K+EE + + + + +A + E+ K +++
Sbjct: 797 L-GDPTK---LRSQF-RLTYNMILNLLRVEALKIEEMIKRSFSENATQALLPEHEKQVQI 851
Query: 553 DIAQLEK 559
A LEK
Sbjct: 852 SEASLEK 858
Score = 331 (121.6 bits), Expect = 3.3e-121, Sum P(4) = 3.3e-121
Identities = 71/219 (32%), Positives = 124/219 (56%)
Query: 715 EVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDEL 774
++ I QLK M D +Q D + R +VLK LG +D VQLKG+ AC I + DEL
Sbjct: 1076 QIKENISQLKQLMSDQNLQLLPD-YEQRIQVLKDLGFVDEQSRVQLKGKVACEIHSADEL 1134
Query: 775 LVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQ 834
++TEL+ + + ++ AL S F+ +K+ L L K + + + K+ ++Q
Sbjct: 1135 VLTELILENVLAEYEPEEIVALLSAFVFQEKTENVPTLNPRLEKGKEAIIRISEKVNDVQ 1194
Query: 835 NECKLEVNVDEYVESTVRP-F-LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEF 892
+ ++ + ++ + +P F L +V+Y W+KG +F + +TD+ EG+I+R+ RLDE
Sbjct: 1195 IQHQVLQSTEDINDFASQPRFGLAEVVYEWAKGMSFNRITDLTDVMEGTIVRTITRLDET 1254
Query: 893 LNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 931
+++ AA+ VG+ L K A E ++R ++F+ SLY+
Sbjct: 1255 CREVKNAAKLVGDPTLYAKMQEAQEKIKRDVIFAASLYM 1293
Score = 40 (19.1 bits), Expect = 3.3e-121, Sum P(4) = 3.3e-121
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 7 AGKRKAPEEDLHVTGT-PEEEST-KKQRNLTRSCVHEVAVPSGYALTKDE 54
A ++A ++D V T EEES +++ T S V V + + ++DE
Sbjct: 212 AKSKEAADDDEEVEQTLQEEESNINPEQDETASDVGGVKIEDEESASEDE 261
>CGD|CAL0002171 [details] [associations]
symbol:orf19.6425 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0055087 "Ski complex" evidence=IEA]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=IEA] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
CGD:CAL0002171 GO:GO:0005524 GO:GO:0003676 EMBL:AACQ01000073
EMBL:AACQ01000072 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG4581 KO:K12599 RefSeq:XP_716180.1
RefSeq:XP_716263.1 ProteinModelPortal:Q5A337 STRING:Q5A337
GeneID:3642143 GeneID:3642220 KEGG:cal:CaO19.13783
KEGG:cal:CaO19.6425 Uniprot:Q5A337
Length = 1245
Score = 602 (217.0 bits), Expect = 2.8e-120, Sum P(3) = 2.8e-120
Identities = 121/232 (52%), Positives = 169/232 (72%)
Query: 69 MAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL 128
MA+T+ FELD FQ+ +V LE+ +SV V+AHTSAGKT VAEYAIAMA R+ + IYTSP+
Sbjct: 282 MARTWPFELDTFQKEAVFHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKCIYTSPI 341
Query: 129 KALSNQKYRELHQEFKD--VGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186
KALSNQK+R+ + FKD VGL+TGDV ++P A+CL+MTTEILR MLYRG++++++V +V
Sbjct: 342 KALSNQKFRDFKETFKDIDVGLITGDVQINPEANCLIMTTEILRSMLYRGADLIRDVEFV 401
Query: 187 IFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYT 246
IFDE+HY+ D +RGVVWEE II LP +K + LSAT+ N +FA W+ ++ +V+ T
Sbjct: 402 IFDEVHYVNDIDRGVVWEEVIIMLPDHVKYILLSATVPNTFEFANWVGRTKQKDIYVIST 461
Query: 247 DFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRREN 298
RP PL+ +F + L+ VVD +F+E+ F K +D L+ GG ++N
Sbjct: 462 PKRPVPLE--IFVSAKNQLFKVVDANRRFQENEFRKHKD-LLE---GGGKKN 507
Score = 384 (140.2 bits), Expect = 2.8e-120, Sum P(3) = 2.8e-120
Identities = 92/252 (36%), Positives = 140/252 (55%)
Query: 320 IVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDR 379
+V + P +VF FS++ CE++A S+ +DFN EK + AV L +EDR
Sbjct: 570 LVNYMKSNNLLPAVVFVFSKKRCEEYADSLRSVDFNNAREKSEIHMFIDRAVGRLKKEDR 629
Query: 380 NLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTV 439
LP I + +L RGIAVHH GLLP++KE +E+LF + LVK LFATETFAMGLN+P +TV
Sbjct: 630 ELPQILKIREMLGRGIAVHHGGLLPIVKECIEILFAKSLVKVLFATETFAMGLNLPTRTV 689
Query: 440 VFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMV-DEQMEMNTLKDMVLEG 498
+F++++K DG S R + GE+ QMS I+M D+ + K++VL G
Sbjct: 690 IFSSMRKHDGRSFRNLLPGEFTQMSGRAGRRGLDKTGTVIVMAYDDPLSPTDFKEVVL-G 748
Query: 499 QFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEE--EAASLDASGEAEVAEYHKLKLDIAQ 556
T + + F + Y L + + K+EE + + + S + + E K + D +
Sbjct: 749 TPTK---LSSQF-RLTYSMILNLLRIEALKVEEMIKHSFSENSTQVLLPENQK-RYD--E 801
Query: 557 LEKKLMSEITRP 568
++K+L S P
Sbjct: 802 IKKQLQSSTITP 813
Score = 315 (115.9 bits), Expect = 2.8e-120, Sum P(3) = 2.8e-120
Identities = 74/222 (33%), Positives = 130/222 (58%)
Query: 716 VNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELL 775
++ E+++L+ + D ++ D + R +VL+ +G+ID V LKGR AC +++G EL+
Sbjct: 1028 LSQEVEKLERLISDENLELLPD-YEQRLQVLEAMGYIDEQHNVVLKGRVACEVNSGWELI 1086
Query: 776 VTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQ----INLRMELAKPLQQLQESARKIA 831
+TEL+ N D + ++ AL SCF+ ++ E+ I R+E K ++ E A K+
Sbjct: 1087 ITELVLNNFLGDFEPAEIVALLSCFVYEGRTQEEEPPLITPRLEKGKA--KILEIAEKLL 1144
Query: 832 EIQNECKLEVNVDE--YVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRL 889
++ E ++ + +E +VES R L +V+Y W+ G +F E++Q++ EG+I+R RL
Sbjct: 1145 KVYVEKQVSLTSEEEDFVESK-RFALANVVYEWANGLSFNEIMQISVEAEGTIVRVITRL 1203
Query: 890 DEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 931
DE +++ AA +G+ L K A E ++R I+F SLYL
Sbjct: 1204 DEICREVKNAALIIGDSTLHLKMVEAQEKIKRDIVFCASLYL 1245
Score = 43 (20.2 bits), Expect = 3.7e-23, Sum P(2) = 3.7e-23
Identities = 26/113 (23%), Positives = 49/113 (43%)
Query: 618 VPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQ-GLPKLNPV-KDMKIE 675
VP PL+ + + PDL + RQ++ +L + P+ L+ V K ++I
Sbjct: 6 VPTNDPLVVDPTTVTTYECPDLNAEERRQNLKT---DLLNPSPEINWEILDLVNKPLEIN 62
Query: 676 DPEVVD-LVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKM 727
+++D LV E L F +S I +Q + +N E++ + +
Sbjct: 63 REKIIDKLVINPERLSRTQFR--FKRSGIHGHITGYQEEVNLN-ELENSNTSL 112
Score = 37 (18.1 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 17/73 (23%), Positives = 30/73 (41%)
Query: 669 VKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRC--FQRKAEVNHEIQQLKSK 726
++++ DP VVD + E LN + ++ E+N EI L +K
Sbjct: 3 IEEVPTNDPLVVDPTT-VTTYE----CPDLNAEERRQNLKTDLLNPSPEINWEILDLVNK 57
Query: 727 MRDSQIQKFRDEL 739
+ +K D+L
Sbjct: 58 PLEINREKIIDKL 70
>FB|FBgn0039117 [details] [associations]
symbol:tst "twister" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 EMBL:AJ276896
ProteinModelPortal:Q9BI21 SMR:Q9BI21 STRING:Q9BI21 PaxDb:Q9BI21
PRIDE:Q9BI21 FlyBase:FBgn0039117 InParanoid:Q9BI21
OrthoDB:EOG46HDRK ArrayExpress:Q9BI21 Bgee:Q9BI21 Uniprot:Q9BI21
Length = 1197
Score = 931 (332.8 bits), Expect = 1.2e-119, Sum P(2) = 1.2e-119
Identities = 188/432 (43%), Positives = 273/432 (63%)
Query: 70 AKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLK 129
A + FELD FQ+ ++ LE+ + V V+AHTSAGKT VAEYAIA++ RD R IYTSP+K
Sbjct: 256 AMDFPFELDVFQKQAILKLEQRQYVFVAAHTSAGKTVVAEYAIALSKRDLTRTIYTSPIK 315
Query: 130 ALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFD 189
ALSNQKYR+ + FKDVGL+TGD+ + P ASCL+MTTEILR MLY GS+V +++ WVIFD
Sbjct: 316 ALSNQKYRDFRKTFKDVGLITGDLQIEPTASCLIMTTEILRSMLYCGSDVTRDLEWVIFD 375
Query: 190 EIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFR 249
E+HY+ + ERG VWEE II LP + ++ LSAT+ N + A+W+ K+ +V+ T R
Sbjct: 376 EVHYINNPERGHVWEEVIILLPEHVNIIMLSATVPNTLELADWVGSTKKRKVYVISTLKR 435
Query: 250 PTPLQHYVFP-VGGSG---LYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENXXXXXXX 305
P PL H+++ GG ++L+VD + ++ + N+ K + K+++ G+ +
Sbjct: 436 PVPLTHFLYTGAGGKSRDDIFLLVDAQGKYLQGNYEKAVER--KKEMQGKAKGGGGGPRN 493
Query: 306 XXXXXXXXXXDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQ 365
I ++ + PV+ F+ SR C+ + ++ +D NT++EK V++
Sbjct: 494 HLNAKQEQYTWI-GLIDFLRRSNMMPVVAFTLSRNRCDSNLAALQSVDLNTEKEKGAVQK 552
Query: 366 VFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFAT 425
F + L DR +P + ++ L+RGI VHHSG+LP++KE+VE+LFQ GLVK LFAT
Sbjct: 553 FFLQCLAKLKPPDRTIPQVLVLKDALERGIGVHHSGILPILKEIVEMLFQNGLVKLLFAT 612
Query: 426 ETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQ 485
ETFAMG+NMPA+TVVF + KK+DG R + GEYIQM+ IIM
Sbjct: 613 ETFAMGVNMPARTVVFDSCKKFDGLEMRNLKPGEYIQMAGRAGRRGHDETGTAIIMCKGS 672
Query: 486 MEMNT-LKDMVL 496
+ + L+ M+L
Sbjct: 673 VPPSMELRPMIL 684
Score = 267 (99.0 bits), Expect = 1.2e-119, Sum P(2) = 1.2e-119
Identities = 90/340 (26%), Positives = 174/340 (51%)
Query: 613 GGGYIVPVQLPLISTLSKIRLSVPPD--LRPLDARQ-----------SILLAVQEL---- 655
GG ++ ++ I +++K L V D +R + RQ S++ AV EL
Sbjct: 862 GGHTVLDIKAIDIISITKSTLKVDADAIIRNWEQRQLERFKDSPPSGSVVKAVTELNQLN 921
Query: 656 ESRF--PQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKL--FAHPLNKSQDENQI-RCF 710
ES P + +N K++ + V ++N ++ L K+ F N + E + + +
Sbjct: 922 ESYIDNPDNIKYVNLSKEIIVNADSEVAMLNYVDHLLRKVGEFLPHTNIAGFEQEFAKVY 981
Query: 711 QRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDT 770
+R+ H I++L+ K + + D N+ +VL+ L +ID V LKG+ AC +
Sbjct: 982 ERRMLEIH-IEELRFKNSARNLTLYPDYC-NKLKVLRALKYIDELDEVTLKGKVACEMGQ 1039
Query: 771 GDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKI 830
+ELL+TEL+ FNDL+ ++AAL S + K ++ + L + + ++ I
Sbjct: 1040 -NELLITELILCNMFNDLEPAEIAALLSGLVFQAKMQDKPVIPEALKECVAAFEQINDTI 1098
Query: 831 AEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLD 890
+ E + + ++ ++ + L++V+Y W++ FAE++++T + EG I+R ++L+
Sbjct: 1099 --LAEEQRFQAAIE--TDNRLNFGLLEVVYEWARNKPFAEIMKLTTVQEGIIVRCIQQLN 1154
Query: 891 EFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLY 930
E + ++ AA +G L+ K AS +++R I+F+ SLY
Sbjct: 1155 ETVRDVKTAAIRIGNPGLQSKMEEASAAIKRDIVFTASLY 1194
>SGD|S000004390 [details] [associations]
symbol:SKI2 "Ski complex component and putative RNA helicase"
species:4932 "Saccharomyces cerevisiae" [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IGI;IMP] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0055087 "Ski
complex" evidence=IDA;IPI] [GO:0034427 "nuclear-transcribed mRNA
catabolic process, exonucleolytic, 3'-5'" evidence=IMP] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 SGD:S000004390 GO:GO:0005524
GO:GO:0006417 GO:GO:0003677 EMBL:BK006945 GO:GO:0051607
GO:GO:0003723 EMBL:U19729 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z18944 EMBL:L13469 GO:GO:0008026 GO:GO:0003724
GO:GO:0070478 GO:GO:0070481 eggNOG:COG4581 KO:K05544
RefSeq:NP_013505.4 GeneID:851117 KEGG:sce:YLR401C
InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087 HOGENOM:HOG000163048
KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R PIR:S55954
RefSeq:NP_013502.3 PDB:4A4K PDB:4A4Z PDBsum:4A4K PDBsum:4A4Z
ProteinModelPortal:P35207 SMR:P35207 DIP:DIP-5887N IntAct:P35207
MINT:MINT-662639 STRING:P35207 PaxDb:P35207 PeptideAtlas:P35207
EnsemblFungi:YLR398C GeneID:851114 KEGG:sce:YLR398C CYGD:YLR398c
GeneTree:ENSGT00690000102154 NextBio:967830 Genevestigator:P35207
GermOnline:YLR398C Uniprot:P35207
Length = 1287
Score = 574 (207.1 bits), Expect = 7.1e-117, Sum P(4) = 7.1e-117
Identities = 112/215 (52%), Positives = 158/215 (73%)
Query: 70 AKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLK 129
A+++ FELD FQ+ +V LE+ +SV V+AHTSAGKT VAEYAIAMA R+ + IYTSP+K
Sbjct: 323 ARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIK 382
Query: 130 ALSNQKYRELHQEFKDV--GLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVI 187
ALSNQK+R+ + F DV GL+TGDV ++P+A+CL+MTTEILR MLYRG++++++V +VI
Sbjct: 383 ALSNQKFRDFKETFDDVNIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVI 442
Query: 188 FDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTD 247
FDE+HY+ D++RGVVWEE II LP +K + LSAT+ N +FA WI ++ +V+ T
Sbjct: 443 FDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTP 502
Query: 248 FRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVK 282
RP PL+ ++ L V+++ +F E NF K
Sbjct: 503 KRPVPLEINIW--AKKELIPVINQNSEFLEANFRK 535
Score = 377 (137.8 bits), Expect = 7.1e-117, Sum P(4) = 7.1e-117
Identities = 70/179 (39%), Positives = 115/179 (64%)
Query: 319 KIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEED 378
+IV + +R+ P++VF FS++ CE++A + ++F +EK + + ++ L +ED
Sbjct: 616 EIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKED 675
Query: 379 RNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKT 438
R+LP I LL+RGIAVHH GLLP++KEL+E+LF +G +K LFATETFAMGLN+P +T
Sbjct: 676 RDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRT 735
Query: 439 VVFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMV-DEQMEMNTLKDMVL 496
V+F++++K DG+ R + GE+ QM+ I+M + + + T K++ +
Sbjct: 736 VIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTM 794
Score = 279 (103.3 bits), Expect = 7.1e-117, Sum P(4) = 7.1e-117
Identities = 72/223 (32%), Positives = 123/223 (55%)
Query: 713 KAEV-NHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTG 771
KA V +I++L M D + D K R VLK ID + V LKGR AC I++G
Sbjct: 1066 KAHVIKKKIEELYHLMSDQNLSLLPDYEK-RLAVLKDTEFIDQNHNVLLKGRVACEINSG 1124
Query: 772 DELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQIN--LRMELAKPLQQLQESARK 829
EL++TEL+ + + ++ AL S F+ K+ E+ + LAK Q+++E +K
Sbjct: 1125 YELVLTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIYKK 1184
Query: 830 IAEIQNECKLEVNVDEYVESTVRPF-LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARR 888
+ + N ++ + DE + F +M+V+Y W++G +F E+++M+ EG+++R
Sbjct: 1185 MLCVFNTHQIPLTQDEAEFLDRKRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITW 1244
Query: 889 LDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 931
LDE +++ A+ +G L K + A E ++R I+F+ SLYL
Sbjct: 1245 LDEICREVKTASIIIGNSTLHMKMSRAQELIKRDIVFAASLYL 1287
Score = 87 (35.7 bits), Expect = 7.1e-117, Sum P(4) = 7.1e-117
Identities = 23/105 (21%), Positives = 51/105 (48%)
Query: 485 QMEMNTLKDMVLEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASG---- 540
++ N + +++ E +IK SF + E P+ K++ L+EE +++
Sbjct: 805 RLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIKVLQEELQTIEYKSCEIC 864
Query: 541 EAEVAEYHKLKLDIAQLEKKLMSEITRPERVLYYLGSGRLIKVRE 585
+ ++ ++ +L L + LM E+ + +L+ L GRL+ R+
Sbjct: 865 DNDIEKFLELMLAYKEATVNLMQEMVKSPSILHILKEGRLVAFRD 909
Score = 42 (19.8 bits), Expect = 4.0e-19, Sum P(2) = 4.0e-19
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 516 EKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQ 556
EK+ I +++ + E + D + +AE+ E + +D +
Sbjct: 248 EKSAKSISEEIMEEATEETTADNADDAEIDELLPIGIDFGR 288
Score = 40 (19.1 bits), Expect = 7.7e-92, Sum P(4) = 7.7e-92
Identities = 17/66 (25%), Positives = 30/66 (45%)
Query: 683 VNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEI--QQLKSKMR-DSQIQKFRDEL 739
V IE + + FA PL K ++ + AE N+ + + LK + + Q K L
Sbjct: 977 VTAIEVITKRKFAAPLGKVIKKDVAALNEFNAETNNILDGKTLKEAINIEKQGLKIHQIL 1036
Query: 740 KNRSRV 745
+R+ +
Sbjct: 1037 LDRTNI 1042
Score = 38 (18.4 bits), Expect = 8.3e-23, Sum P(3) = 8.3e-23
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 350 SKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPL-LKRGIAVHHSGLLPVIKE 408
+KL + K E++ + A + ++ + I+ +LP+ + G S +PV KE
Sbjct: 242 AKLKEEEKSAKSISEEIMEEATEETTADNADDAEIDELLPIGIDFGRTKPVSKSVPVKKE 301
Score = 37 (18.1 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 660 PQGLPKLNPVKDMKIEDP-EVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNH 718
P+G+ + +K M + P E D Q +EL+ LN+ +E IR +A++
Sbjct: 197 PEGMNR--GIKPM--DSPAENEDQNGQFKELKQ------LNEIDNELDIRIEANEAKLKE 246
Query: 719 EIQQLKS 725
E + KS
Sbjct: 247 EEKSAKS 253
>WB|WBGene00008502 [details] [associations]
symbol:skih-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 EMBL:Z68341
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC
GeneTree:ENSGT00690000102154 PIR:T20487 RefSeq:NP_502084.2
ProteinModelPortal:Q19103 SMR:Q19103 STRING:Q19103 PaxDb:Q19103
EnsemblMetazoa:F01G4.3 GeneID:178017 KEGG:cel:CELE_F01G4.3
UCSC:F01G4.3 CTD:178017 WormBase:F01G4.3 InParanoid:Q19103
NextBio:899374 Uniprot:Q19103
Length = 1266
Score = 629 (226.5 bits), Expect = 1.7e-113, Sum P(3) = 1.7e-113
Identities = 120/235 (51%), Positives = 165/235 (70%)
Query: 69 MAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL 128
MA+ Y F LDPFQ+ SV C+ER ES+ V+AHTSAGKT VAEYAIA+ K R +YTSP+
Sbjct: 285 MARKYPFSLDPFQQSSVLCMERGESLFVAAHTSAGKTVVAEYAIALCQAHKTRAVYTSPI 344
Query: 129 KALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIF 188
KALSNQK+R+ Q F DVGL+TGD+ L P A+CL+MTTEILR MLY GSEV++++ WV+F
Sbjct: 345 KALSNQKFRDFKQIFGDVGLVTGDIQLHPEAACLIMTTEILRSMLYNGSEVIRDLEWVVF 404
Query: 189 DEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDF 248
DE+HY+ + ERG VWEE +I LP +K+V LSAT+ N +FA+W+ + + +V+ TD
Sbjct: 405 DEVHYINNEERGHVWEEVLIMLPAHVKIVMLSATVPNCVEFADWVGRIKNRKINVISTDR 464
Query: 249 RPTPLQHYVFPVGGSG-----LYLVVDEKEQFREDNFVKLQDT----FLKQKIGG 294
RP PL+H+++ G G L+ ++D QF + +D+ + K+K GG
Sbjct: 465 RPVPLEHFLY-TGQDGKTQKDLFKIIDRSGQFILKGYNDAKDSKAKIYEKEKAGG 518
Score = 359 (131.4 bits), Expect = 1.7e-113, Sum P(3) = 1.7e-113
Identities = 74/171 (43%), Positives = 105/171 (61%)
Query: 331 PVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPL 390
P++VF FSR+ C+++A ++ ++ T+ EK V F V L D+ LP + M L
Sbjct: 564 PMVVFVFSRKRCDENAQMLASMNLTTEVEKQHVRLFFSQCVQRLKGSDKELPQVLTMRDL 623
Query: 391 LKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGD 450
RG AVHHSG+LP++KE+VELLFQ+G VK LFATETFAMG+NMPA+ VVF ++ K DG
Sbjct: 624 CLRGFAVHHSGILPILKEVVELLFQKGYVKILFATETFAMGVNMPARCVVFDSIMKHDGT 683
Query: 451 SHRYIGSGEYIQMSXXXXXXXXXXX-XICIIMVDEQM-EMNTLKDMVLEGQ 499
R + GEY QM+ + II D + + + LK+++ GQ
Sbjct: 684 ERRMLNPGEYTQMAGRAGRRGLDLTGTVIIICKDSTVPQPDVLKNLI-SGQ 733
Score = 238 (88.8 bits), Expect = 1.7e-113, Sum P(3) = 1.7e-113
Identities = 68/250 (27%), Positives = 125/250 (50%)
Query: 686 IEELEHKLF---AHPLNK-SQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKN 741
+E+LE+ L + P ++ + + + + +I+ L+ ++ S +E N
Sbjct: 1019 LEKLEYNLNLPQSFPARHCTRFDEHFSVLRDRIRIERKIESLEYEL-SSDALLLSEEYHN 1077
Query: 742 RSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFI 801
R +VL+ L ++ +V LKGR C I ELL+TEL+ + F+ ++AAL S
Sbjct: 1078 RLKVLEALNFVEQK-MVSLKGRIGCEIHH-QELLITELILDYKFHQRSPAELAALLSTLT 1135
Query: 802 PVDKSSEQINLRMELAKPLQQLQESARKI-AEIQNECKLEVNVDEYVESTVRPFLMDVIY 860
S ++ + ++ ES + + +++ + + +R LM+V+Y
Sbjct: 1136 CQYNSGREMQFGGDTV--FGEISESVKSVLTRLESVASKHKSQISDLGCEIRFDLMEVVY 1193
Query: 861 CWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLR 920
W+ G F ++++MTD EG I++ +RLDE +R A + VG+ L +K S S+R
Sbjct: 1194 EWANGTPFYQIMEMTDCQEGLIVKCIQRLDEVCKDVRNAGRIVGDPALVEKMEEVSASIR 1253
Query: 921 RGIMFSNSLY 930
R I+F+ SLY
Sbjct: 1254 RDIVFAASLY 1263
Score = 49 (22.3 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 484 EQMEMNTLKDMVLEGQFTAEHV---IKNSFHQFQYEKALPDIGKKVSKLE 530
E+M+M L DMV ++ V +K S + E+ P+ KKVS+ E
Sbjct: 184 EEMDMFDLLDMVTSNEYIIHTVAAPVKKS-ESIESEET-PEDDKKVSENE 231
>RGD|1305984 [details] [associations]
symbol:Skiv2l2 "superkiller viralicidic activity 2-like 2 (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000460
"maturation of 5.8S rRNA" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0000178 "exosome (RNase complex)" evidence=ISO]
InterPro:IPR012961 Pfam:PF08148 RGD:1305984 GO:GO:0005524
GO:GO:0016818 eggNOG:COG4581 HOGENOM:HOG000163047
InterPro:IPR025696 Pfam:PF13234 OrthoDB:EOG4D52WW IPI:IPI00372914
EMBL:BC091305 UniGene:Rn.145315 STRING:Q5BJW0 InParanoid:Q5BJW0
Genevestigator:Q5BJW0 Uniprot:Q5BJW0
Length = 337
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 144/321 (44%), Positives = 220/321 (68%)
Query: 612 RGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKD 671
+G +VPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ D
Sbjct: 18 KGEMQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPIDD 77
Query: 672 MKIEDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDS 730
M I+D + ++ ++E EH++++HPL+ + E ++KA++ +I+ K +++ +
Sbjct: 78 MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKA 137
Query: 731 QIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH 790
+ DELK R RVL++LG + V+++KGR AC I + DELL+TE+MFNG FNDL
Sbjct: 138 RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSS 197
Query: 791 HQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVEST 850
Q AL SCF+ + SSE L +LA PL+Q+QE A++IA++ E KLE++ + Y+ S+
Sbjct: 198 EQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYL-SS 256
Query: 851 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEK 910
+P LMDV+Y W+ GATFA + +MTD+FEGSIIR RRL+E L Q+ AA+A+G LE
Sbjct: 257 FKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELEN 316
Query: 911 KFAAASESLRRGIMFSNSLYL 931
KFA ++R I+F+ SLYL
Sbjct: 317 KFAEGITKIKRDIVFAASLYL 337
>UNIPROTKB|F5H6Y7 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 EMBL:AL844853 EMBL:AL662849 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI00946735
SMR:F5H6Y7 Ensembl:ENST00000547025 Ensembl:ENST00000547224
Ensembl:ENST00000547296 Ensembl:ENST00000548561
Ensembl:ENST00000552010 Uniprot:F5H6Y7
Length = 880
Score = 381 (139.2 bits), Expect = 4.8e-66, Sum P(3) = 4.8e-66
Identities = 81/221 (36%), Positives = 122/221 (55%)
Query: 248 FRPTPLQHYVFPVGGS---G-LYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENXXXXX 303
++ L+HY+F S G L+L++D + F + + K+++ +
Sbjct: 116 YKEVLLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEA-KKERMSKHAQTFGAKQ 174
Query: 304 XXXXXXXXXXXXDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTV 363
++ + R PV+VF+FSR C++ A ++ LD T EK +
Sbjct: 175 PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI 234
Query: 364 EQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALF 423
Q + L DR LP + M LL RG+ VHHSG+LP++KE+VE+LF GLVK LF
Sbjct: 235 HLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLF 294
Query: 424 ATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMS 464
ATETFAMG+NMPA+TVVF +++K DG + R + GEY+QM+
Sbjct: 295 ATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMA 335
Score = 354 (129.7 bits), Expect = 4.8e-66, Sum P(3) = 4.8e-66
Identities = 94/291 (32%), Positives = 158/291 (54%)
Query: 647 SILLAVQEL---ESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF-AHPLNKSQ 702
++ AVQEL P G P L+PV D++++D VV+ + +LE + A ++ +
Sbjct: 594 AVTTAVQELLRLAQAHPAGPPTLDPVNDLQLKDMSVVEGGLRARKLEELIQGAQCVHSPR 653
Query: 703 DENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKG 762
Q + + ++ E+++L+ + D + E R VL+ LG++D G V+L G
Sbjct: 654 FPAQYLKLRERMQIQKEMERLRFLLSDQSLLLL-PEYHQRVEVLRTLGYVDEAGTVKLAG 712
Query: 763 RAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQINLRMELAKP 819
R AC + + ELL+TELMF+ + L ++AAL S C P D + N L +
Sbjct: 713 RVACAMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNT---LKQG 768
Query: 820 LQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFE 879
+++++ A++I E+Q C L V+E+V + L++V+Y W++G F+E+ ++ E
Sbjct: 769 IERVRAVAKRIGEVQVACGLNQTVEEFV-GELNFGLVEVVYEWARGMPFSELAGLSGTPE 827
Query: 880 GSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLY 930
G ++R +RL E LR AA+ VGE L K A+ LRR I+F+ SLY
Sbjct: 828 GLVVRCIQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLY 878
Score = 69 (29.3 bits), Expect = 4.8e-66, Sum P(3) = 4.8e-66
Identities = 22/90 (24%), Positives = 45/90 (50%)
Query: 503 EHVIKNSFHQFQ-------YEKALPDIGKKVSKLEEEAASLDASGE-AEVAEYHKLKLDI 554
E ++K SF +F +E+AL ++ K++ LEE D +G+ ++ EY+ ++
Sbjct: 397 EDMMKRSFSEFPSRKDSKAHEQALAELTKRLGALEEP----DMTGQLVDLPEYYSWGEEL 452
Query: 555 AQLEKKLMSEITRPERVLYYLGSGRLIKVR 584
+ + + I L L +GR++ V+
Sbjct: 453 TETQHMIQRRIMESVNGLKSLSAGRVVVVK 482
>UNIPROTKB|Q10701 [details] [associations]
symbol:helY "Probable helicase HelY" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842578 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 PIR:G70767 RefSeq:NP_216608.1 RefSeq:NP_336620.1
RefSeq:YP_006515507.1 ProteinModelPortal:Q10701 SMR:Q10701
PRIDE:Q10701 EnsemblBacteria:EBMYCT00000003887
EnsemblBacteria:EBMYCT00000069683 GeneID:13316898 GeneID:887736
GeneID:924573 KEGG:mtc:MT2153 KEGG:mtu:Rv2092c KEGG:mtv:RVBD_2092c
PATRIC:18126496 TubercuList:Rv2092c HOGENOM:HOG000245391 KO:K03727
OMA:ANESAWQ ProtClustDB:CLSK791623 Uniprot:Q10701
Length = 906
Score = 416 (151.5 bits), Expect = 7.9e-66, Sum P(4) = 7.9e-66
Identities = 88/189 (46%), Positives = 125/189 (66%)
Query: 75 FELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQ 134
F LD FQ+ + + LER VLV A T AGKT V E+A+ +A + YT+PLKALSNQ
Sbjct: 16 FSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFYTTPLKALSNQ 75
Query: 135 KYRELHQEF-KD-VGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192
K+ +L + +D +GL+TGD++++ NA +VMTTE+LR MLY S L+ +++V+ DE+H
Sbjct: 76 KHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQGLSYVVMDEVH 135
Query: 193 YMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTP 252
++ DR RG VWEE I+ LP +++V LSAT+SNA +F WI + VV + RP P
Sbjct: 136 FLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTT-VVVDEHRPVP 194
Query: 253 LQHYVFPVG 261
L +V VG
Sbjct: 195 LWQHVL-VG 202
Score = 242 (90.2 bits), Expect = 7.9e-66, Sum P(4) = 7.9e-66
Identities = 53/136 (38%), Positives = 77/136 (56%)
Query: 331 PVIVFSFSRRECEQHAMSM--SKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELML 388
P I F FSR C+ S L ++EE+ + +V + L + D +
Sbjct: 274 PAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWR 333
Query: 389 PLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448
L RG+A HH+G+LP + VE LF GLVKA+FATET A+G+NMPA+TVV + K++
Sbjct: 334 EGLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFN 393
Query: 449 GDSHRYIGSGEYIQMS 464
G+ H + GEY Q++
Sbjct: 394 GEQHMPLTPGEYTQLT 409
Score = 114 (45.2 bits), Expect = 7.9e-66, Sum P(4) = 7.9e-66
Identities = 56/253 (22%), Positives = 103/253 (40%)
Query: 685 QIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRS 743
++E +L HP++ S E+QIR +R + + QL+ K+ + R
Sbjct: 654 ELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLART-FDRFV 712
Query: 744 RVLKKLGHIDA---DGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 800
+L + ID D VV GR I + +LLV E + G + L ++A + S
Sbjct: 713 GLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAV 772
Query: 801 IPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPF--LMDV 858
+ + + P +L+++ + + + + + S P + V
Sbjct: 773 VYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSR-EPDDGFVRV 831
Query: 859 IYCWSKGATFAEVIQMTDI-------FEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKK 911
IY WS+ A + D+ G +R R++ + L+Q+R AA E+ K
Sbjct: 832 IYRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNP-ELRATAK 890
Query: 912 FAAASESLRRGIM 924
A +RRG++
Sbjct: 891 RAIGD--IRRGVV 901
Score = 69 (29.3 bits), Expect = 7.9e-66, Sum P(4) = 7.9e-66
Identities = 18/66 (27%), Positives = 38/66 (57%)
Query: 498 GQFTAEHVIKNSFHQFQYEKALPDIGKKVSK----LEEEAASLDASGEAEVAEYHKLKLD 553
G A +++ SF Q+Q ++++ + + + + L E AA L S +A + EY +L+
Sbjct: 466 GPQQAHRLLEQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGS-DAPILEYARLRAR 524
Query: 554 IAQLEK 559
+++LE+
Sbjct: 525 VSELER 530
Score = 49 (22.3 bits), Expect = 3.8e-56, Sum P(3) = 3.8e-56
Identities = 41/169 (24%), Positives = 71/169 (42%)
Query: 676 DPEVVDLVNQIEELEHKL--FAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 733
D VV LV IE L A L S D + + +A V+ E++ +++ R S++Q
Sbjct: 484 DRSVVGLVRGIERGNRILGEIAAELGGS-DAPILEYARLRARVS-ELE--RAQARASRLQ 539
Query: 734 KFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDE-----LLVTELMFNGTFNDL 788
+ R + L++ G I + G A L D L++TE + G +
Sbjct: 540 R-RQAATDALAALRR-GDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSA 597
Query: 789 DHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQE-----SARKIAE 832
D+ + S +P Q +R +LA L+ +AR+++E
Sbjct: 598 DYSGTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSE 646
Score = 37 (18.1 bits), Expect = 6.9e-55, Sum P(3) = 6.9e-55
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 543 EVAEYHKLKLDIAQLEKKL 561
+ Y +++ D AQLE+K+
Sbjct: 679 QAERYLRIERDNAQLERKV 697
>TAIR|locus:2020573 [details] [associations]
symbol:EMB25 "EMBRYO DEFECTIVE 25" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=IMP] [GO:0010497 "plasmodesmata-mediated intercellular
transport" evidence=NAS;IMP] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0016441 "posttranscriptional gene silencing"
evidence=IMP] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0016556 "mRNA modification" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0009570 GO:GO:0003676
GO:GO:0009793 GO:GO:0031047 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0008026 EMBL:AC002062
GO:GO:0003724 GO:GO:0010497 eggNOG:COG4581 GO:GO:0016441
HOGENOM:HOG000245391 EMBL:AK316759 EMBL:AF387007 IPI:IPI00538730
PIR:D96723 RefSeq:NP_177164.1 UniGene:At.35348
ProteinModelPortal:B9DFG3 SMR:B9DFG3 PaxDb:B9DFG3 PRIDE:B9DFG3
EnsemblPlants:AT1G70070.1 GeneID:843343 KEGG:ath:AT1G70070
GeneFarm:2280 TAIR:At1g70070 InParanoid:Q94EZ6 OMA:PSYGMVL
PhylomeDB:B9DFG3 ProtClustDB:CLSN2682754 Genevestigator:B9DFG3
Uniprot:B9DFG3
Length = 1171
Score = 409 (149.0 bits), Expect = 1.7e-52, Sum P(4) = 1.7e-52
Identities = 91/213 (42%), Positives = 130/213 (61%)
Query: 68 EMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127
E+ Y F +D FQR+++ R SV+VSA TS+GKT +AE A +R+ YT+P
Sbjct: 146 ELISIYDFRIDKFQRLAIEAFLRGSSVVVSAPTSSGKTLIAEAAAVSTVAKGRRLFYTTP 205
Query: 128 LKALSNQKYRELHQEFKD--VGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEV------ 179
LKALSNQK+RE + F D VGL+TGD ++ +A ++MTTEILR MLY+ +
Sbjct: 206 LKALSNQKFREFRETFGDDNVGLLTGDSAINKDAQIVIMTTEILRNMLYQSVGMASSGTG 265
Query: 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQ 239
L V ++ DE+HY+ D RG VWEE +I+ P ++++ LSAT++N + A WI +H +
Sbjct: 266 LFHVDAIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGEIHGK 325
Query: 240 PCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEK 272
+V + RP PL Y F S L L+ DEK
Sbjct: 326 T-ELVTSTRRPVPLTWY-FSTKHSLLPLL-DEK 355
Score = 204 (76.9 bits), Expect = 1.7e-52, Sum P(4) = 1.7e-52
Identities = 50/134 (37%), Positives = 68/134 (50%)
Query: 331 PVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPL 390
P I F F+RR C+ + EK VE + + R L+
Sbjct: 439 PAIWFIFNRRGCDAAVQYVENFQLLDDCEKSEVELALKKFRVLYPDAVRESAEKGLL--- 495
Query: 391 LKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGD 450
RGIA HH+G LP+ K +E LFQ GLVK +FATET A G+NMPA+T V +++ K G+
Sbjct: 496 --RGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKKAGN 553
Query: 451 SHRYIGSGEYIQMS 464
+G E QM+
Sbjct: 554 ERIELGPNELYQMA 567
Score = 63 (27.2 bits), Expect = 1.7e-52, Sum P(4) = 1.7e-52
Identities = 37/169 (21%), Positives = 74/169 (43%)
Query: 762 GRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQ 821
G A I +EL + ++ N DL Q+A + + + SE I +R +
Sbjct: 1005 GETAAAIRGENELWLAMVLRNKALVDLKPPQLAGVCASLV-----SEGIKVRPW--RDNN 1057
Query: 822 QLQESARKIAEIQNECKLE----VNVDEYVESTVRPFLMDV-----IYCWSKGATFAEVI 872
+ E + + ++ N + + + + E E + P +DV + W+ G ++ E++
Sbjct: 1058 YIYEPSDTVVDMVNFLEDQRSSLIKLQEKHEVMI-PCCLDVQFSGMVEAWASGLSWKEMM 1116
Query: 873 QMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRR 921
+ EG + R RR + L Q+ + V L++ AAA++ + R
Sbjct: 1117 MECAMDEGDLARLLRRTIDLLAQIPKLPD-IDPV-LQRSAAAAADIMDR 1163
Score = 49 (22.3 bits), Expect = 4.7e-51, Sum P(4) = 4.7e-51
Identities = 36/139 (25%), Positives = 65/139 (46%)
Query: 803 VDKSSEQI-NLR--MELAKPLQQLQESARKIAEIQNECKLEVNVD-----EYVESTVRPF 854
+DK S ++ + R E+ ++L+E RK AE + +LE + + +E PF
Sbjct: 690 IDKKSRKLLSARDYKEITVLKEELREEKRKRAEQRRRMELERFLALKPLLKGMEEGNLPF 749
Query: 855 LMDVIYCWSKG---ATFAEVIQMTDIFEGSIIRSARRLDE-F-LNQLR--AAAQAVGEVN 907
+ + + S+G + A + D F+GS ++ LDE F LN + AA G+ N
Sbjct: 750 IC-LEFKDSEGREQSVPAVYLGHIDSFQGSKLQKMMSLDESFALNLIEDELAADEPGKPN 808
Query: 908 LEKKFAAASESLRRGIMFS 926
++ + A S +F+
Sbjct: 809 VKPSYYVALGSDNSWYLFT 827
Score = 47 (21.6 bits), Expect = 1.7e-52, Sum P(4) = 1.7e-52
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 670 KDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDEN-QIRCFQRKAEVNHEIQQLKSKMR 728
K E +V+ +EE + KL N + Q AE++++I+ L S++
Sbjct: 628 KSSGTEAGKVLQAGRSLEEAK-KLVEKSFGNYVSSNVTVAAKQELAEIDNKIEILSSEIS 686
Query: 729 DSQIQK 734
D I K
Sbjct: 687 DEAIDK 692
Score = 40 (19.1 bits), Expect = 8.8e-52, Sum P(4) = 8.8e-52
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 725 SKMRDSQIQKFRDELKNRSRVLKKL 749
S+ D+ QK++++ SR+ KK+
Sbjct: 909 SEEYDNAAQKYKEQRSKISRLKKKM 933
Score = 38 (18.4 bits), Expect = 1.4e-51, Sum P(4) = 1.4e-51
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 526 VSKLEEEAASLDASGEAEVA--EYHKLKLDIAQLEKKL 561
+S L +E L S E + A +Y + + I++L+KK+
Sbjct: 896 LSSLSDEDEVLHMSEEYDNAAQKYKEQRSKISRLKKKM 933
>POMBASE|SPAC694.02 [details] [associations]
symbol:SPAC694.02 "DEAD/DEAH box helicase" species:4896
"Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC694.02
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 PIR:T50247 RefSeq:NP_594482.1
ProteinModelPortal:Q9P7T8 PRIDE:Q9P7T8 EnsemblFungi:SPAC694.02.1
GeneID:2543333 KEGG:spo:SPAC694.02 HOGENOM:HOG000194492 OMA:HTRDYRI
OrthoDB:EOG4S4SQ7 NextBio:20804349 Uniprot:Q9P7T8
Length = 1717
Score = 216 (81.1 bits), Expect = 3.8e-22, Sum P(2) = 3.8e-22
Identities = 62/188 (32%), Positives = 100/188 (53%)
Query: 74 SFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQR--VIYTSPLKAL 131
+F+ D +QR ++ L+R+ESV V A TS+GKT ++ YA+ RD VIY +P KAL
Sbjct: 733 AFDPDEWQRETLDILDRDESVFVVAPTSSGKTFISFYAMEKVLRDNDDGVVIYVAPTKAL 792
Query: 132 SNQKYRELHQEFKD----VG-----LMTGDVTLSPNASCLVMTT--EILRGMLYR---GS 177
NQ E++ F G + T D ++ +C V+ T +L+ ML + +
Sbjct: 793 VNQLSAEVYARFNKHYPHAGQTVWSVYTRDYRINNPTNCQVLITVPHVLQSMLLQPALAN 852
Query: 178 EVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLH 237
++ +IFDEIH + E G+V EE ++ L P +V LSAT+ N +F W+ L
Sbjct: 853 AWCPKIRRIIFDEIHCIGQMEDGLV-EEQLLLLAPC-PIVALSATVGNPQEFQVWLSALQ 910
Query: 238 KQPCHVVY 245
+ + ++
Sbjct: 911 RAHSYPIH 918
Score = 161 (61.7 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 52/177 (29%), Positives = 88/177 (49%)
Query: 122 VIYTSPLKALSNQKYRELHQEFKD----VG-----LMTGDVTLSPNASCLVMTT--EILR 170
VIY +P KAL NQ E++ F G + T D ++ +C V+ T +L+
Sbjct: 783 VIYVAPTKALVNQLSAEVYARFNKHYPHAGQTVWSVYTRDYRINNPTNCQVLITVPHVLQ 842
Query: 171 GMLYR---GSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNAT 227
ML + + ++ +IFDEIH + E G+V EE ++ L P +V LSAT+ N
Sbjct: 843 SMLLQPALANAWCPKIRRIIFDEIHCIGQMEDGLV-EEQLLLLAPC-PIVALSATVGNPQ 900
Query: 228 QFAEWICHL---HKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFV 281
+F W+ L H P H++ + R + L+ +V+ GG+ + + E+ + F+
Sbjct: 901 EFQVWLSALQRAHSYPIHLIVHEHRYSDLRKFVY--GGAKEFNGLQEEGDLGQIAFI 955
Score = 139 (54.0 bits), Expect = 3.8e-22, Sum P(2) = 3.8e-22
Identities = 38/112 (33%), Positives = 61/112 (54%)
Query: 339 RRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEED--RNLPAI-------ELMLP 389
+ + + A +S ++F EE E F A +E+ R+L A+ E +
Sbjct: 1161 KEQALKEAGDISWIEFFDPEEPSP-EFSFAGAKSTYGKEELYRDLEALRRRQAVPEWYVD 1219
Query: 390 LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVF 441
L RGI +HHSGL +++VE+LF+ G + + AT T ++G+NMP +TVVF
Sbjct: 1220 ALYRGIGIHHSGLNRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVVF 1271
Score = 58 (25.5 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 316 DIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKD 361
++ ++K + ++ P I F++ R+ECE ++++ F T EK+
Sbjct: 1077 NLLPMLKDLHSKELLPAICFNYDRQECEY----LAEIVFKTLVEKE 1118
>WB|WBGene00016194 [details] [associations]
symbol:C28H8.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0004427 "inorganic diphosphatase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006796 "phosphate-containing compound metabolic process"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 GO:GO:0008026 EMBL:FO080703
eggNOG:COG4581 GeneTree:ENSGT00690000102154 PIR:A88470
RefSeq:NP_498283.1 ProteinModelPortal:Q09475 SMR:Q09475
STRING:Q09475 PaxDb:Q09475 EnsemblMetazoa:C28H8.3.1
EnsemblMetazoa:C28H8.3.2 GeneID:175834 KEGG:cel:CELE_C28H8.3
UCSC:C28H8.3.1 CTD:175834 WormBase:C28H8.3 HOGENOM:HOG000018763
InParanoid:Q09475 OMA:YARFRNK NextBio:889866 Uniprot:Q09475
Length = 1714
Score = 196 (74.1 bits), Expect = 7.2e-20, Sum P(4) = 7.2e-20
Identities = 60/175 (34%), Positives = 91/175 (52%)
Query: 75 FELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR--DKQRVIYTSPLKALS 132
F D +QR + ++R S L+ A TSAGKT V+ Y I R D V+Y +P KAL
Sbjct: 783 FAPDGWQRKMLDSVDRGNSALIIAPTSAGKTFVSYYCIEKVLRSSDNDVVVYVAPSKALI 842
Query: 133 NQKYRELHQEFKDVGL-----MTGDVT--LSPNA-SCLVMTT--EILRG-MLYRGSEVLK 181
NQ ++ F++ + + G +T S NA C V+ T E L+ ML R V K
Sbjct: 843 NQVCGSVYARFRNKSMKRGISLFGTLTQEYSQNAMQCQVLITVPECLQELMLSRTPAVQK 902
Query: 182 EVA---WVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWI 233
V+ +V+FDE+H + E +WE+ ++ + + LSAT+ NA + EW+
Sbjct: 903 FVSHIKYVVFDEVHSIGASEESHIWEQLLLLIQ--CPFLALSATIGNANKLHEWL 955
Score = 149 (57.5 bits), Expect = 7.2e-20, Sum P(4) = 7.2e-20
Identities = 28/76 (36%), Positives = 49/76 (64%)
Query: 366 VFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFAT 425
++ V+ + + + + +++L L +RGI HH+GL V + VE+LF+ G + LF+T
Sbjct: 1253 IYAKMVERMQKGAKTRESTQVLLKLFERGIGYHHAGLNTVERGAVEVLFRSGNLAVLFST 1312
Query: 426 ETFAMGLNMPAKTVVF 441
T ++G+NMP KTV+F
Sbjct: 1313 STLSLGVNMPCKTVMF 1328
Score = 48 (22.0 bits), Expect = 7.2e-20, Sum P(4) = 7.2e-20
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 317 IFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMS-KLDFNTQEEKDTVEQVFQN 369
I +V + E+ P I F+ R CE+ A++++ +L+ E +T E F+N
Sbjct: 1131 IVTLVDDLKEKGELPAICFNDDRHVCEKLAVTLANELERRELEYMETDE--FKN 1182
Score = 37 (18.1 bits), Expect = 7.2e-20, Sum P(4) = 7.2e-20
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 44 VPSGYALTKDE 54
VP GYA+ ++E
Sbjct: 569 VPKGYAVVEEE 579
Score = 37 (18.1 bits), Expect = 7.2e-20, Sum P(4) = 7.2e-20
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 35 TRS-CVHEVAVPSG 47
TR+ CV+E+AV G
Sbjct: 665 TRALCVYEIAVREG 678
>UNIPROTKB|G4N3Z7 [details] [associations]
symbol:MGG_05900 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR003583 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00278 SMART:SM00382 SMART:SM00490 GO:GO:0005524
EMBL:CM001233 GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 KO:K15271 RefSeq:XP_003711726.1
ProteinModelPortal:G4N3Z7 EnsemblFungi:MGG_05900T0 GeneID:2684075
KEGG:mgr:MGG_05900 Uniprot:G4N3Z7
Length = 1508
Score = 186 (70.5 bits), Expect = 7.2e-19, Sum P(2) = 7.2e-19
Identities = 71/233 (30%), Positives = 114/233 (48%)
Query: 23 PEEESTKKQRNLTRSCVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFEL-DPFQ 81
P + ST + T V + + G+A +H V + + FEL + Q
Sbjct: 203 PAQPSTPPSQ--TEQTVRHLDL--GHAPPIANGVHLISPRDVLPDRLRVVFPFELFNAVQ 258
Query: 82 RVSVACLER-NESVLVSAHTSAGKTAVAEYAIAMAFR---DKQ-RVIYTSPLKALSNQKY 136
S A + + N++V+VSA T +GKTA+ E AI D+ +VIY +P KAL +++
Sbjct: 259 SKSFASVYKTNDNVVVSAPTGSGKTAIFELAICKLLSQNTDQNFKVIYVAPTKALCSERA 318
Query: 137 RELHQEFKDVGL----MTGDVTLSPN------ASCLVMTTEILRGMLYRGSE---VLKEV 183
R+ +F+ + L +TGD T S + A +V T E L + R + +L V
Sbjct: 319 RDWESKFRHLNLTSAELTGD-TFSTDMSRVRAAQIIVTTPEKLDSITRRWEDYRKLLDLV 377
Query: 184 AWVIFDEIHYMKDRERGVVWEESIIFLPPA---IKMVFLSATMSNATQFAEWI 233
V+ DE+H++KD RG E I + I++V LSAT+ N+ A+W+
Sbjct: 378 QLVLIDEVHFLKDT-RGATLEVLICRMKTQVSNIRVVALSATVPNSEDVAKWL 429
Score = 137 (53.3 bits), Expect = 7.2e-19, Sum P(2) = 7.2e-19
Identities = 48/195 (24%), Positives = 83/195 (42%)
Query: 330 QPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLP 389
+P+IVF F+R+ CE A +S+L + ++K QN + N+ +
Sbjct: 489 KPIIVFCFTRKSCELTAKKLSQLWISMADDKKPWPGPGQN-MKVTNDG---------LQQ 538
Query: 390 LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKW-D 448
++++G+A HH+GL + VE + EG + + T T ++G+N+P TV+ + D
Sbjct: 539 VMQQGVAFHHAGLEQQDRLAVEKAYLEGKLHVICCTSTLSVGVNLPCHTVILKGTMGFQD 598
Query: 449 GDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTLKDMVLEGQFTAEHVIK- 507
G Y E +QM + II+ + E + + G E +
Sbjct: 599 GKLLEY-SDLEVVQMLGRAGRPQFDNSAVAIILT--RSETKARYEAMASGTQVLESTLHH 655
Query: 508 NSFHQFQYEKALPDI 522
N H E L I
Sbjct: 656 NLIHHLNSEICLGTI 670
Score = 104 (41.7 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 41/143 (28%), Positives = 69/143 (48%)
Query: 135 KYRELHQEFKDV--GLMTGDVTLSPNASCLVMTTEILRGMLYRGSE---VLKEVAWVIFD 189
K+R L+ ++ + D++ A +V T E L + R + +L V V+ D
Sbjct: 324 KFRHLNLTSAELTGDTFSTDMSRVRAAQIIVTTPEKLDSITRRWEDYRKLLDLVQLVLID 383
Query: 190 EIHYMKDRERGVVWEESIIFLPPA---IKMVFLSATMSNATQFAEWICHLHK---QPCHV 243
E+H++KD RG E I + I++V LSAT+ N+ A+W+ + QP +
Sbjct: 384 EVHFLKDT-RGATLEVLICRMKTQVSNIRVVALSATVPNSEDVAKWLGRGNTDNHQPARL 442
Query: 244 VY--TDFRPTPLQHYVFPVGGSG 264
+FRP LQ +V+ + SG
Sbjct: 443 ETFGEEFRPVRLQKHVYGLHCSG 465
>UNIPROTKB|J9P0M0 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102154 EMBL:AAEX03010133 EMBL:AAEX03010134
EMBL:AAEX03010135 Ensembl:ENSCAFT00000044956 Uniprot:J9P0M0
Length = 1708
Score = 175 (66.7 bits), Expect = 7.5e-17, Sum P(3) = 7.5e-17
Identities = 54/178 (30%), Positives = 86/178 (48%)
Query: 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQR--VIYTSPL 128
+ +F D +QR + ++ NES ++ A TS+GKT + Y + ++ V+Y +P
Sbjct: 754 RVQNFIPDTWQRELLDVVDNNESAVIVAPTSSGKTYASYYCMEKVLKESNEGVVVYVAPT 813
Query: 129 KALSNQKYRELHQEF-KDV-------GLMTGDVTLSPNASCLVMTT-----EILRGMLYR 175
KAL NQ +H F K + G+ T D +C V+ T EIL +R
Sbjct: 814 KALVNQVAATVHNRFTKSLPNGEALCGVFTRDYRHDA-LNCQVLITVPACFEILLLSPHR 872
Query: 176 GSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWI 233
+ V K + +VIFDE+H + VWE ++ + + LSAT+SN EW+
Sbjct: 873 QAWV-KRIRYVIFDEVHCLGGEIGAEVWEHLLVMI--RCPFLALSATISNPEHLTEWL 927
Score = 139 (54.0 bits), Expect = 7.5e-17, Sum P(3) = 7.5e-17
Identities = 27/52 (51%), Positives = 38/52 (73%)
Query: 390 LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVF 441
L +RGI HHS L K+LVE+LF++G ++ + AT T A+G+NMP K+VVF
Sbjct: 1252 LARRGIGYHHSSLSFKDKQLVEVLFRKGFIRVVTATGTLALGINMPCKSVVF 1303
Score = 41 (19.5 bits), Expect = 7.5e-17, Sum P(3) = 7.5e-17
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 233 ICHLHKQPCHVVYTDFRPTPLQHYVFP 259
+C H PC + TD ++ Y FP
Sbjct: 994 VCFEHFHPCAALTTDH----IEKYGFP 1016
Score = 37 (18.1 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 676 DPEVVDLVNQIEELEHKLFAHPLNKSQDENQIR 708
D E DL+N+I ++ + K+ DE ++
Sbjct: 1159 DKEAHDLINKIRKIRKSI---ERQKTIDERSLK 1188
>UNIPROTKB|E2QSY2 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IEA] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003727
GO:GO:0051607 GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 OMA:QDCTYAD
GO:GO:1900245 GO:GO:1900246 GeneTree:ENSGT00690000102154
EMBL:AAEX03010133 EMBL:AAEX03010134 EMBL:AAEX03010135
Ensembl:ENSCAFT00000014321 Uniprot:E2QSY2
Length = 1711
Score = 175 (66.7 bits), Expect = 7.5e-17, Sum P(3) = 7.5e-17
Identities = 54/178 (30%), Positives = 86/178 (48%)
Query: 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQR--VIYTSPL 128
+ +F D +QR + ++ NES ++ A TS+GKT + Y + ++ V+Y +P
Sbjct: 757 RVQNFIPDTWQRELLDVVDNNESAVIVAPTSSGKTYASYYCMEKVLKESNEGVVVYVAPT 816
Query: 129 KALSNQKYRELHQEF-KDV-------GLMTGDVTLSPNASCLVMTT-----EILRGMLYR 175
KAL NQ +H F K + G+ T D +C V+ T EIL +R
Sbjct: 817 KALVNQVAATVHNRFTKSLPNGEALCGVFTRDYRHDA-LNCQVLITVPACFEILLLSPHR 875
Query: 176 GSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWI 233
+ V K + +VIFDE+H + VWE ++ + + LSAT+SN EW+
Sbjct: 876 QAWV-KRIRYVIFDEVHCLGGEIGAEVWEHLLVMI--RCPFLALSATISNPEHLTEWL 930
Score = 139 (54.0 bits), Expect = 7.5e-17, Sum P(3) = 7.5e-17
Identities = 27/52 (51%), Positives = 38/52 (73%)
Query: 390 LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVF 441
L +RGI HHS L K+LVE+LF++G ++ + AT T A+G+NMP K+VVF
Sbjct: 1255 LARRGIGYHHSSLSFKDKQLVEVLFRKGFIRVVTATGTLALGINMPCKSVVF 1306
Score = 41 (19.5 bits), Expect = 7.5e-17, Sum P(3) = 7.5e-17
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 233 ICHLHKQPCHVVYTDFRPTPLQHYVFP 259
+C H PC + TD ++ Y FP
Sbjct: 997 VCFEHFHPCAALTTDH----IEKYGFP 1019
Score = 37 (18.1 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 676 DPEVVDLVNQIEELEHKLFAHPLNKSQDENQIR 708
D E DL+N+I ++ + K+ DE ++
Sbjct: 1162 DKEAHDLINKIRKIRKSI---ERQKTIDERSLK 1191
>UNIPROTKB|Q8IY21 [details] [associations]
symbol:DDX60 "Probable ATP-dependent RNA helicase DDX60"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0009615 "response to
virus" evidence=IDA] [GO:0003725 "double-stranded RNA binding"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:1900245 "positive regulation of MDA-5 signaling
pathway" evidence=IMP] [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003727 GO:GO:0045087 GO:GO:0051607 GO:GO:0009615
GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AC068989 EMBL:BC007820
EMBL:BC038115 EMBL:AK001649 IPI:IPI00217606 RefSeq:NP_060101.3
UniGene:Hs.591710 ProteinModelPortal:Q8IY21 SMR:Q8IY21
IntAct:Q8IY21 STRING:Q8IY21 PhosphoSite:Q8IY21 DMDM:296439377
PaxDb:Q8IY21 PRIDE:Q8IY21 Ensembl:ENST00000393743 GeneID:55601
KEGG:hsa:55601 UCSC:uc003irp.3 CTD:55601 GeneCards:GC04M169137
HGNC:HGNC:25942 HPA:HPA046952 MIM:613974 neXtProt:NX_Q8IY21
PharmGKB:PA162383444 eggNOG:COG4581 HOGENOM:HOG000169263
HOVERGEN:HBG107797 InParanoid:Q8IY21 OMA:QDCTYAD OrthoDB:EOG4XSKP0
PhylomeDB:Q8IY21 GenomeRNAi:55601 NextBio:60142 ArrayExpress:Q8IY21
Bgee:Q8IY21 CleanEx:HS_DDX60 Genevestigator:Q8IY21 GO:GO:1900245
GO:GO:1900246 Uniprot:Q8IY21
Length = 1712
Score = 165 (63.1 bits), Expect = 3.5e-16, Sum P(2) = 3.5e-16
Identities = 52/178 (29%), Positives = 87/178 (48%)
Query: 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQR--VIYTSPL 128
+ F D +QR + +++NES ++ A TS+GKT + Y + ++ V+Y +P
Sbjct: 758 RVQDFIPDTWQRELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLKESDDGVVVYVAPT 817
Query: 129 KALSNQKYRELHQEFKDVGLMTGDVTLSP-------NA-SCLVMTT-----EILRGMLYR 175
KAL NQ + F L +G+V +A +C V+ T EIL +R
Sbjct: 818 KALVNQVAATVQNRFTK-NLPSGEVLCGVFTREYRHDALNCQVLITVPACFEILLLAPHR 876
Query: 176 GSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWI 233
+ V K++ +VIFDE+H + +WE ++ + + LSAT+SN EW+
Sbjct: 877 QNWV-KKIRYVIFDEVHCLGGEIGAEIWEHLLVMI--RCPFLALSATISNPEHLTEWL 931
Score = 134 (52.2 bits), Expect = 3.5e-16, Sum P(2) = 3.5e-16
Identities = 27/57 (47%), Positives = 40/57 (70%)
Query: 385 ELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVF 441
E + L +RGI HHS + K+LVE+LF++G ++ + AT T A+G+NMP K+VVF
Sbjct: 1251 EELKALAERGIGYHHSAMSFKEKQLVEILFRKGYLRVVTATGTLALGVNMPCKSVVF 1307
Score = 61 (26.5 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 2 EESLMAGKRKAPEEDLHVTGTPEEESTKKQRNLTRSCVHE 41
E +MA K + ++ + +E+S KK RN+ +S +HE
Sbjct: 1165 EAHVMANKLRKVKKSIEKQKIIDEKSQKKTRNVDQSLIHE 1204
Score = 57 (25.1 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 19/88 (21%), Positives = 43/88 (48%)
Query: 665 KLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLK 724
KL VK IE +++D +Q + + +++++ +N ++C ++ E+ +
Sbjct: 1172 KLRKVKK-SIEKQKIIDEKSQ--KKTRNVDQSLIHEAEHDNLVKCLEKNLEIPQDCTYAD 1228
Query: 725 SKMRDSQ-IQKF--RDELKNRSRVLKKL 749
K D++ +QK R + + + LK L
Sbjct: 1229 QKAVDTETLQKVFGRVKFERKGEELKAL 1256
>DICTYBASE|DDB_G0290389 [details] [associations]
symbol:ascc3 "activating signal cointegrator 1
complex subunit" species:44689 "Dictyostelium discoideum"
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 dictyBase:DDB_G0290389 GO:GO:0005524
GO:GO:0006355 GO:GO:0006351 GenomeReviews:CM000154_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0008026 EMBL:AAFI02000163 RefSeq:XP_635715.1
ProteinModelPortal:Q54G57 EnsemblProtists:DDB0233132 GeneID:8627633
KEGG:ddi:DDB_G0290389 InParanoid:Q54G57 KO:K15271
ProtClustDB:CLSZ2429672 Uniprot:Q54G57
Length = 2195
Score = 162 (62.1 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 63/222 (28%), Positives = 103/222 (46%)
Query: 82 RVSVACLERNESVLVSAHTSAGKTAVAEYAIA---------MAFRDKQ--RVIYTSPLKA 130
RV + + NE++L+SA T AGKT +A I + DK ++IY +PLKA
Sbjct: 489 RVFESAYKSNENILISAPTGAGKTNIALLTILHEIESNINPYGYLDKDNFKIIYIAPLKA 548
Query: 131 LSNQKYRELHQEFKDVGL----MTGDVTLSPN----ASCLVMTTEILRGMLYRGSEVL-- 180
L+++ + K +G+ +TGD+ L+ +V T E + + S+V
Sbjct: 549 LASEMVEKFSNSLKYLGIVSKELTGDMQLTQKELKETQIIVTTPEKWDVITRKSSDVALT 608
Query: 181 KEVAWVIFDEIHYMKDRERGVVWE-------ESIIFLPPAIKMVFLSATMSNATQFAEWI 233
K V +I DEIH + + ERG V E + I++V LSAT+ N A +I
Sbjct: 609 KLVRLIIIDEIHLLHE-ERGPVLECIVARTLRQVETTQEMIRIVGLSATLPNYKDVARFI 667
Query: 234 CHLHKQPCHVVYTDFRPTPL-QHYVFPVGGSGLYLVVDEKEQ 274
H + +RP PL Q+++ G+ ++ + Q
Sbjct: 668 -RAPASGTHFFDSSYRPVPLTQNFIGVKDNQGIMVMKNNMNQ 708
Score = 139 (54.0 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 46/184 (25%), Positives = 80/184 (43%)
Query: 330 QPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLP 389
+PV++F SRR+ A+ + + +++ F +D++L
Sbjct: 1556 KPVLIFVSSRRQTRLTALDLISYLVVDNDPLQWIQKGFDIEPTLARVKDQHLRHT----- 1610
Query: 390 LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDG 449
L GI +HH+GL + +VE LF E ++ L +T T A G+N+PA V+ + +DG
Sbjct: 1611 -LSFGIGMHHAGLNDGDRTIVESLFGENKIQILISTSTLAWGVNLPAHLVIIKGTEYFDG 1669
Query: 450 DSHRYIGSG--EYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTLKDMVLEGQFTAEHVIK 507
+ RY+ + +QM ++MV E + K L F E +K
Sbjct: 1670 KTKRYVDFPLTDVLQMIGRAGRPQFDKEGKAMVMVHEPKKQFYKK--FLYDPFPVESHLK 1727
Query: 508 NSFH 511
+ H
Sbjct: 1728 DFLH 1731
Score = 131 (51.2 bits), Expect = 4.3e-12, Sum P(3) = 4.3e-12
Identities = 45/154 (29%), Positives = 77/154 (50%)
Query: 66 NGEMAKTYSFE-LDPFQ-RVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK--QR 121
N + + F +P Q +V N +VL+ + T +GKT AE A+ FRD+ +
Sbjct: 1315 NKDFESLFKFSHFNPIQTQVFHTLYYTNNNVLLGSPTGSGKTICAELAMFKVFRDEPHMK 1374
Query: 122 VIYTSPLKALSNQKYRELHQEFKD-VGL----MTGDVTLS----PNASCLVMTTEILRGM 172
V+Y +PLKAL ++ + +F++ +G +TGD T + NA + T E G+
Sbjct: 1375 VVYIAPLKALVRERMNDWKVKFQEKLGKKLVELTGDYTPNMIALQNADIVTTTPEKWDGI 1434
Query: 173 L--YRGSEVLKEVAWVIFDEIHYMKDRERGVVWE 204
++ + V+ +I DEIH + + RG + E
Sbjct: 1435 SRNWKNRSYVTSVSLLIIDEIHLIGEL-RGPILE 1467
Score = 127 (49.8 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 390 LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDG 449
L + GI+VHH+GLL + +VE F G +K L T T A G+N+PA TV+ + ++
Sbjct: 776 LFQHGISVHHAGLLRSDRNVVEKYFANGTIKVLVCTATLAWGVNLPAHTVIIKGTQVYNA 835
Query: 450 DSHRYIGSG 458
+ ++ G
Sbjct: 836 KNGGFMDLG 844
Score = 68 (29.0 bits), Expect = 9.1e-06, Sum P(3) = 9.1e-06
Identities = 30/122 (24%), Positives = 55/122 (45%)
Query: 149 MTGDVTLS----PNASCLVMTTEILRGML--YRGSEVLKEVAWVIFDEIHYMKDRERGVV 202
+TGD T + NA + T E G+ ++ + V+ +I DEIH + + RG +
Sbjct: 1407 LTGDYTPNMIALQNADIVTTTPEKWDGISRNWKNRSYVTSVSLLIIDEIHLIGEL-RGPI 1465
Query: 203 WEESIIFLPPA-------IKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQH 255
E + + I++V LS M+NA +EW+ + + RP P++
Sbjct: 1466 LEVIVSRMKLISKQTGVNIRVVGLSTAMANAIDLSEWM-GIDRVGLFNFRPSCRPVPIEV 1524
Query: 256 YV 257
++
Sbjct: 1525 HI 1526
Score = 43 (20.2 bits), Expect = 4.3e-12, Sum P(3) = 4.3e-12
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 24 EEESTKKQRNLTRSCVHEVAVPSGYALTK 52
EEEST+ + C +E+ V ++ K
Sbjct: 1030 EEESTELDKLAENQCYYELTVLDSHSKVK 1058
Score = 43 (20.2 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 414 FQEGLVKALFA-TETFAMGL-NMPAKTVVFTAVKKWDGDSHRY 454
FQE L K L T + + + +V T +KWDG S +
Sbjct: 1396 FQEKLGKKLVELTGDYTPNMIALQNADIVTTTPEKWDGISRNW 1438
Score = 37 (18.1 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 650 LAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELE 690
L ++ L++ G+P KD ++E+ + ++ ++LE
Sbjct: 924 LFIRMLQNPLVYGIPSSQRSKDPQLEEFKREIIIRAAKKLE 964
>UNIPROTKB|F1P0I1 [details] [associations]
symbol:F1P0I1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:QDCTYAD GeneTree:ENSGT00690000102154 EMBL:AADN02016399
IPI:IPI00595626 Ensembl:ENSGALT00000015699 Uniprot:F1P0I1
Length = 1313
Score = 167 (63.8 bits), Expect = 7.8e-16, Sum P(2) = 7.8e-16
Identities = 50/169 (29%), Positives = 81/169 (47%)
Query: 78 DPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR--DKQRVIYTSPLKALSNQK 135
D +QR + ++ NES ++ A TS+GKT + Y + + D+ V+Y +P KAL NQ
Sbjct: 744 DTWQRELLDAVDNNESAVIVAPTSSGKTYASYYCMEKVLKMSDEGVVVYVAPTKALVNQV 803
Query: 136 YRELHQEF-KDV-------GLMTGDVTLSP-NASCLVMTTEILRGMLY--RGSEVLKEVA 184
++ F K + G+ T D N+ LV + L ++ R K +
Sbjct: 804 VGSVYSRFTKKLPDGLVVCGVFTRDYRHDVMNSQILVTVPQCLEILMLSPRCQSWTKRIQ 863
Query: 185 WVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWI 233
++IFDEIH + VWE ++ + + LSAT+SN EW+
Sbjct: 864 YIIFDEIHCLGGEIGAEVWEHLLVTI--RCPFLALSATISNPDHLTEWL 910
Score = 126 (49.4 bits), Expect = 7.8e-16, Sum P(2) = 7.8e-16
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 390 LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVF 441
L +RGI HH + ++ VE+LF+ G +K + AT T A+G+NMP ++VVF
Sbjct: 1245 LARRGIGYHHGAMAMKERQTVEMLFRLGYIKVVTATSTLALGINMPCRSVVF 1296
Score = 47 (21.6 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 728 RDSQIQKFRDELKNRSRVLKK 748
RD +++K ++++KN+ R L K
Sbjct: 1139 RDPKMEKEKEDIKNKLRKLNK 1159
Score = 42 (19.8 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 800 FIPVD----KSSEQINLRMELAKPLQQLQESARKIAEIQNEC 837
F P D K S+ N+ M L +QLQE +K+ I + C
Sbjct: 1164 FEPTDIKKVKPSKVENMVMLLTMK-KQLQERLKKLTVIHSMC 1204
>CGD|CAL0001532 [details] [associations]
symbol:orf19.3098 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000388 "spliceosome conformational change to
release U4 (or U4atac) and U1 (or U11)" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001532 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 KO:K12854 GO:GO:0008026 EMBL:AACQ01000086
EMBL:AACQ01000085 RefSeq:XP_715407.1 RefSeq:XP_715477.1
ProteinModelPortal:Q5A0Z8 STRING:Q5A0Z8 GeneID:3642881
GeneID:3642903 KEGG:cal:CaO19.10610 KEGG:cal:CaO19.3098
Uniprot:Q5A0Z8
Length = 1987
Score = 146 (56.5 bits), Expect = 1.3e-15, Sum P(3) = 1.3e-15
Identities = 40/127 (31%), Positives = 68/127 (53%)
Query: 332 VIVFSFSRRECEQHAMS-MSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNL--PAIELML 388
+I+F SR+E A M KLD D VEQ + + L +E ++ P ++ ++
Sbjct: 612 LIIFVHSRKETFTTAKYLMEKLDI------DIVEQ--EGVKEILKQEGESMSNPKLKEVI 663
Query: 389 PLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448
P RG +HH+GL + +VE LF +G ++ L +T T A G+N+PA TV+ + +
Sbjct: 664 P---RGFGIHHAGLTKKDRGVVEDLFAQGYLRVLVSTATLAWGVNLPAHTVIIKGTETYS 720
Query: 449 GDSHRYI 455
+S ++
Sbjct: 721 PESGAWV 727
Score = 141 (54.7 bits), Expect = 1.3e-15, Sum P(3) = 1.3e-15
Identities = 61/198 (30%), Positives = 95/198 (47%)
Query: 89 ERNESVLVSAHTSAGKTAVAEYAIAMA---FRDKQ-------RVIYTSPLKALSNQKYRE 138
E + ++L+ A T AGKT VA I FR+ +++Y +PLKAL ++ RE
Sbjct: 387 ETDNNLLICAPTGAGKTNVAMLTILRTIENFRNNGHIQLKNFKIVYIAPLKALVQEQMRE 446
Query: 139 LHQEFKDV-GL----MTGDVTLSPNASC---LVMTTEILRGMLYRGS-EVLKEVAWVIFD 189
+ V G+ +TGD +LS +++TT ++ R +K V +I D
Sbjct: 447 FQRRLTSVYGVVVNELTGDSSLSKQQIAETQIIVTTPEKWDIITRKDPSYVKLVKLMIID 506
Query: 190 EIHYMKDRERGVVWEESII-------FLPPAIKMVFLSATMSNATQFAEWICHLHKQPCH 242
EIH + D ERG V E + I++V LSAT+ N A++I +P
Sbjct: 507 EIHLLHD-ERGPVLESLVSRAIRKSETTGSDIRIVGLSATLPNYADVAKFI---RAKPEG 562
Query: 243 VVYTD--FRPTPLQH-YV 257
+ Y D +RP PL+ Y+
Sbjct: 563 LFYFDASYRPCPLEQVYI 580
Score = 98 (39.6 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 41/148 (27%), Positives = 63/148 (42%)
Query: 370 AVDCLNEEDRNLPAIE--LMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFAT-E 426
+VD L E + + I+ L+ LL +GIAV +SG+ V + +VE LF+ + LF T +
Sbjct: 1457 SVDLLKLE-KYISKIQNPLLKNLLPKGIAVFYSGMARVDRLIVERLFESKSIGVLFCTMD 1515
Query: 427 TFAMGLNMPAKTVVFTA-VKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQ 485
T P VF A + +DG HR++ +Y + I Q
Sbjct: 1516 TSKFA---PTANNVFVAGTRVYDGHEHRFL---DYPLNDLYEMVGCCQDGGVVHIYTTSQ 1569
Query: 486 MEMNTLKDMVLEGQFTAEHVIKNSFHQF 513
M L E ++ NS H+F
Sbjct: 1570 MV--EFYSSFLNSGLAVESLLSNSLHEF 1595
Score = 97 (39.2 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 34/157 (21%), Positives = 77/157 (49%)
Query: 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQ-RVIYTSPLKALSNQKYRELHQEF----KDVG 147
+V + + GKT +AE AI + +K+ R++Y +P + L ++ +++ F K++
Sbjct: 1224 NVFIGSSKGDGKTVLAELAILNHWNNKKGRIVYINPCQELVDKLFKKWSTFFSSYEKEIN 1283
Query: 148 LMTGDV---TLSPNASCLVMTTEILRGML---YRGSEVLKEVAWVIFDEIHYMKDRERGV 201
+++G++ + S N S L++ T L ++ + + + I+D++H +
Sbjct: 1284 VLSGNLREDSASVNQSHLILATPEQFNCLSKRWKTRKAFRSIDLFIWDDLHLVGSDVHYE 1343
Query: 202 VWEESIIFLPPA-----IKMVFLSATMSNATQFAEWI 233
+ + L +++V LS+ + N+ AEWI
Sbjct: 1344 MLVTRVRMLTSQWDDYKLRIVALSSPVLNSRDIAEWI 1380
Score = 59 (25.8 bits), Expect = 1.3e-15, Sum P(3) = 1.3e-15
Identities = 50/239 (20%), Positives = 102/239 (42%)
Query: 632 RLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEH 691
R+S+P DLR D ++S+L V ++ + L + + D + +V + ++
Sbjct: 1761 RISIPFDLRQ-D-QKSVLTRVLQILNAAIDILSSDGSLNVLLAMDLSQM-IVQAVWSSDN 1817
Query: 692 KLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGH 751
L P + +E RC Q E ++I L+ + R+ +Q EL + + +
Sbjct: 1818 PLRQVP--RFTNEILARCTQHNVETVYDIMSLEDEERNEILQLPDQELNEVASFVNSYPN 1875
Query: 752 IDAD-----GVVQLKGRAACL-IDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDK 805
I+ GV + + + ID +E+ E++ N F V + +I V
Sbjct: 1876 IELSYEMKGGVTSNESKFVTVTIDRDEEIESLEVVKNENF------PVTKQENWWIVVGD 1929
Query: 806 SSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNV----DEYVESTVR-PFLMDVI 859
S + ++ +Q++ +S I N+ K E+ + D Y+++ F++DV+
Sbjct: 1930 SKTRHLYGIKKVN-IQKISQSFEIEFTIPNKGKHELTIYLICDSYLDADKEMEFVIDVV 1987
Score = 40 (19.1 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 784 TFNDLDHHQVAALASCFIPVDKSSEQINLRMELAK 818
TFN H + + + V+ S + + +LAK
Sbjct: 1387 TFNFAPHSRENRITEIKLSVESSDNTVKIYKDLAK 1421
Score = 38 (18.4 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 397 VHHSGLLPVIKELVELLFQE 416
V +SG+ + EL+E +F +
Sbjct: 1636 VSNSGISTYLSELIESVFDD 1655
Score = 38 (18.4 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 545 AEYHKLKLDIAQLEKKLMSEITRPE 569
A+Y KLDI +E++ + EI + E
Sbjct: 626 AKYLMEKLDIDIVEQEGVKEILKQE 650
>WB|WBGene00013189 [details] [associations]
symbol:Y54E2A.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AL032646 RefSeq:NP_497060.2
ProteinModelPortal:Q9XWI1 SMR:Q9XWI1 PaxDb:Q9XWI1
EnsemblMetazoa:Y54E2A.4 GeneID:190256 KEGG:cel:CELE_Y54E2A.4
UCSC:Y54E2A.4 CTD:190256 WormBase:Y54E2A.4 Uniprot:Q9XWI1
Length = 2017
Score = 152 (58.6 bits), Expect = 2.6e-15, Sum P(3) = 2.6e-15
Identities = 46/154 (29%), Positives = 80/154 (51%)
Query: 66 NGEMAKTYSFE-LDPFQRVSVACLERNE-SVLVSAHTSAGKTAVAEYAIAMAFRDK--QR 121
N + Y+F+ +P Q CL + + S L+ A T +GKT AE A+ +D +
Sbjct: 1168 NSKFEAIYNFDYFNPIQAQVFFCLYKTDKSALIGAPTGSGKTLCAELAMFRLLQDHPGMK 1227
Query: 122 VIYTSPLKALSNQKYRELHQEFKD-VGL----MTGDVTLSPN----ASCLVMTTEILRGM 172
V+Y +PLK+L ++ + ++F+D +G ++GDVT P +S L+ T E G+
Sbjct: 1228 VVYIAPLKSLVRERVDDWKKKFEDGMGYRVVEVSGDVTPDPEELAASSILITTPEKWDGI 1287
Query: 173 L--YRGSEVLKEVAWVIFDEIHYMKDRERGVVWE 204
+ E ++ V ++ DE+H + +RG V E
Sbjct: 1288 SRSWATREYVRRVGLIVLDEVHLL-GVDRGAVLE 1320
Score = 150 (57.9 bits), Expect = 2.6e-15, Sum P(3) = 2.6e-15
Identities = 47/170 (27%), Positives = 75/170 (44%)
Query: 318 FKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNE- 376
+K + RK PV++F SRR+ A++ L K + D +
Sbjct: 1402 YKAILTYSPRK--PVLIFVSSRRQTRLTALAFVNLLIADHNPKQWLNMDMLELEDLMAAI 1459
Query: 377 EDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPA 436
+D NL +L LP GI +HH+GL + +VE LF E ++ L AT T A G+N PA
Sbjct: 1460 KDENL---KLTLPF---GIGMHHAGLSAHERAIVEQLFIEKKIQVLIATATLAWGINCPA 1513
Query: 437 KTVVFTAVKKWDGDSHRYIGSG--EYIQMSXXXXXXXXXXXXICIIMVDE 484
V+ + +DG +Y+ + +QM + +I V +
Sbjct: 1514 HLVIVKGTEYFDGKKGKYVDFPVTDVLQMMGRAGRPQFDDSAVAVIYVQD 1563
Score = 129 (50.5 bits), Expect = 3.8e-09, Sum P(3) = 3.8e-09
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 389 PLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448
PL +RG+ +HH+GL + L+E F EG V LF T T A G+N+PA VV +D
Sbjct: 613 PLFQRGMGIHHAGLCRQDRILMERCFAEGHVSVLFCTATLAWGVNLPAHAVVIKGTDVFD 672
Query: 449 GD 450
+
Sbjct: 673 AE 674
Score = 113 (44.8 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 40/135 (29%), Positives = 63/135 (46%)
Query: 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQ-----------RVIYTSPLKALSNQKYRELH 140
E++L+ A T AGKT +A I + Q ++IY +P+KAL+ +
Sbjct: 328 ENLLICAPTGAGKTNIAMLTILNTIHEHQNSRGDIMKDDFKIIYIAPMKALATEMTESFG 387
Query: 141 QEFKDVGL----MTGDVTLSPN----ASCLVMTTE---ILRGMLYRGSEVLKEVAWVIFD 189
+ +GL +TGD LS N LV+T E ++ + ++ V +I D
Sbjct: 388 KRLAPLGLKVKELTGDTQLSRNEVADTQMLVLTPEKWDVITRKSTSDNSLINVVRLLIID 447
Query: 190 EIHYMKDRERGVVWE 204
E+H + D ERG V E
Sbjct: 448 EVHLLHD-ERGPVIE 461
Score = 92 (37.4 bits), Expect = 1.5e-08, Sum P(4) = 1.5e-08
Identities = 34/129 (26%), Positives = 62/129 (48%)
Query: 149 MTGDVTLSPN---ASCLVMTT-EILRGML--YRGSEVLKEVAWVIFDEIHYMKDRERGVV 202
++GDVT P AS +++TT E G+ + E ++ V ++ DE+H + +RG V
Sbjct: 1260 VSGDVTPDPEELAASSILITTPEKWDGISRSWATREYVRRVGLIVLDEVHLL-GVDRGAV 1318
Query: 203 WEESIIFLP----------PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTP 252
E + L ++++ LS ++NA AEW+ + + C+ RP P
Sbjct: 1319 LEAIVSRLKMITRRSHVTEEPVRLLGLSTALANAGDVAEWL-GIPDEACYNFRPSVRPVP 1377
Query: 253 LQHYV--FP 259
+ ++ FP
Sbjct: 1378 ISVHIQGFP 1386
Score = 80 (33.2 bits), Expect = 5.2e-08, Sum P(3) = 5.2e-08
Identities = 38/127 (29%), Positives = 57/127 (44%)
Query: 149 MTGDVTLSPN----ASCLVMTTE---ILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGV 201
+TGD LS N LV+T E ++ + ++ V +I DE+H + D ERG
Sbjct: 400 LTGDTQLSRNEVADTQMLVLTPEKWDVITRKSTSDNSLINVVRLLIIDEVHLLHD-ERGP 458
Query: 202 VWE-------ESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCH-VVYTD--FRPT 251
V E + I++V LSAT+ N A + L P + + D FRP
Sbjct: 459 VIETLVARTLRQVEMSQSGIRIVGLSATLPNFIDVARF---LRVNPYKGLFFFDGRFRPV 515
Query: 252 PL-QHYV 257
PL Q ++
Sbjct: 516 PLTQKFI 522
Score = 41 (19.5 bits), Expect = 2.6e-15, Sum P(3) = 2.6e-15
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 823 LQESARKIAEIQNECKLEVNVDEYVESTVR 852
L +S ++N K+ +V EY E VR
Sbjct: 1688 LVKSLHSGCSVENMLKILTDVPEYAEIPVR 1717
Score = 39 (18.8 bits), Expect = 1.5e-08, Sum P(4) = 1.5e-08
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 88 LERNESVLVSAHTSAGKTAVAEYAIAMA 115
++R VLV HT G + E A A
Sbjct: 549 VKRGHQVLVFVHTRNGTAKLGEAFCARA 576
Score = 38 (18.4 bits), Expect = 7.7e-09, Sum P(3) = 7.7e-09
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 900 AQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 931
A G+VN+ + + S R + S LY+
Sbjct: 901 ASVAGKVNVLLQSLISRTSTRNSALMSEQLYV 932
>GENEDB_PFALCIPARUM|PF14_0370 [details] [associations]
symbol:PF14_0370 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 GO:GO:0004004 KO:K01509
RefSeq:XP_001348544.1 ProteinModelPortal:Q8IL78
EnsemblProtists:PF14_0370:mRNA GeneID:811952 KEGG:pfa:PF14_0370
EuPathDB:PlasmoDB:PF3D7_1439100 HOGENOM:HOG000282165 OMA:GVAIHHA
ProtClustDB:CLSZ2433245 Uniprot:Q8IL78
Length = 2472
Score = 153 (58.9 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 43/175 (24%), Positives = 83/175 (47%)
Query: 336 SFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGI 395
+F E + + + + +E K+ +FQN ++ + E+ +L I LK GI
Sbjct: 1764 NFCDNEIYDYNLLFNNSKLSEEERKNVANILFQNYLNLI--ENEHLKEI------LKYGI 1815
Query: 396 AVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRY- 454
+HH+GL K +VE LF +++ L T T A G+N+PA V+ + +D + +Y
Sbjct: 1816 GIHHAGLNENDKTIVEYLFLNKIIQILICTSTLAWGINLPAYLVIIKGNEFYDAKTKKYK 1875
Query: 455 -IGSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTLKDMVLEGQFTAEHVIKN 508
I + +QM + I++V E+ + N +K+ + ++++N
Sbjct: 1876 DIPYTDLLQMIGRAGRPQFDDKALAILLVQEKRK-NAIKNFLYHPMNIESNIMEN 1929
Score = 141 (54.7 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 43/149 (28%), Positives = 78/149 (52%)
Query: 71 KTYSFE-LDPFQ-RVSVACLERNESVLVSAHTSAGKTAVAEYAIAM-AFR-DKQRVIYTS 126
K +SF+ +P Q ++ A +E++L+ A T +GKT + E I R + Q+ +Y
Sbjct: 1364 KFFSFKYFNPIQTQMFHATFHTDENILLGAPTGSGKTVIGELCILRNLLRCEGQKSVYIC 1423
Query: 127 PLKALSNQKYRELHQEFK-----DVGLMTGDVTLSPN----ASCLVMTTEILRGML--YR 175
P+KA+ N++Y+ +FK +V +TGD + ++ ++ T E L + ++
Sbjct: 1424 PMKAIVNERYKSWKSKFKSLFNKNVIELTGDKNENKENIAESNIIICTPEKLDVITRNWK 1483
Query: 176 GSEVLKEVAWVIFDEIHYMKDRERGVVWE 204
+ +K + +IFDEIH + RG V E
Sbjct: 1484 NKKFVKNINLIIFDEIHLLGQENRGGVIE 1512
Score = 50 (22.7 bits), Expect = 9.4e-06, Sum P(3) = 9.4e-06
Identities = 34/163 (20%), Positives = 70/163 (42%)
Query: 121 RVIYTSPLKALSNQKYRELHQEFKDVGL----MTGDVTLSPN----ASCLVMTTE----I 168
++IY +P+K+L + ++ K L T + +LS +V E +
Sbjct: 506 KIIYIAPMKSLVFEITNLFRKKLKIFNLNVCEYTKEYSLSSKELEQVHIIVTVPEKLDIL 565
Query: 169 LRGMLYRGS----EVLKEVAWVIFDEIHYMKDRERGVVWEESII-FLP-----PAIKMVF 218
LR Y + ++K + +I DE+H + + +RG V E + FL +I+ +
Sbjct: 566 LRNSSYSTTVSDESLIKYIKCLILDEVHLL-NTDRGDVIETIVSRFLQYSETSQSIRRIM 624
Query: 219 -LSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPV 260
+SAT+ N +++ + C+ +R L ++ +
Sbjct: 625 AMSATLPNYKDVRDFL-KVENDMCYYFNEKYRSIQLDKTLYGI 666
Score = 50 (22.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 347 MSMSKLDFNTQEEKDTV--EQVFQNAVDCLNEE 377
M+ +K+D NT + D++ + +N VD LN E
Sbjct: 2064 MNSTKIDDNTMDHVDSINGDDDKENHVDSLNVE 2096
Score = 50 (22.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 17/80 (21%), Positives = 35/80 (43%)
Query: 665 KLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVN-HEIQQL 723
K+N KDM D + + +N E E+K+ + + N + + + + + H I Q
Sbjct: 1659 KINN-KDMNEGDNNIAENINTFEYTEYKMNINRKDNIASYNNMSYYHKSSVTDEHNINQC 1717
Query: 724 KSKMRDSQIQKFRDELKNRS 743
+ D + F +K ++
Sbjct: 1718 NNN--DDNNKGFFGYMKKKT 1735
Score = 48 (22.0 bits), Expect = 9.4e-06, Sum P(3) = 9.4e-06
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 73 YSFELDPFQ----RVSVACLERNESVLVSAHTSAGKTAVA 108
Y F+ + F +V + N+++LV A T GKT +A
Sbjct: 333 YIFDFEYFNYVQSKVFNSAFRSNKNLLVCAPTGCGKTNIA 372
>UNIPROTKB|Q8IL78 [details] [associations]
symbol:PF14_0370 "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0004004
KO:K01509 RefSeq:XP_001348544.1 ProteinModelPortal:Q8IL78
EnsemblProtists:PF14_0370:mRNA GeneID:811952 KEGG:pfa:PF14_0370
EuPathDB:PlasmoDB:PF3D7_1439100 HOGENOM:HOG000282165 OMA:GVAIHHA
ProtClustDB:CLSZ2433245 Uniprot:Q8IL78
Length = 2472
Score = 153 (58.9 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 43/175 (24%), Positives = 83/175 (47%)
Query: 336 SFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGI 395
+F E + + + + +E K+ +FQN ++ + E+ +L I LK GI
Sbjct: 1764 NFCDNEIYDYNLLFNNSKLSEEERKNVANILFQNYLNLI--ENEHLKEI------LKYGI 1815
Query: 396 AVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRY- 454
+HH+GL K +VE LF +++ L T T A G+N+PA V+ + +D + +Y
Sbjct: 1816 GIHHAGLNENDKTIVEYLFLNKIIQILICTSTLAWGINLPAYLVIIKGNEFYDAKTKKYK 1875
Query: 455 -IGSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTLKDMVLEGQFTAEHVIKN 508
I + +QM + I++V E+ + N +K+ + ++++N
Sbjct: 1876 DIPYTDLLQMIGRAGRPQFDDKALAILLVQEKRK-NAIKNFLYHPMNIESNIMEN 1929
Score = 141 (54.7 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 43/149 (28%), Positives = 78/149 (52%)
Query: 71 KTYSFE-LDPFQ-RVSVACLERNESVLVSAHTSAGKTAVAEYAIAM-AFR-DKQRVIYTS 126
K +SF+ +P Q ++ A +E++L+ A T +GKT + E I R + Q+ +Y
Sbjct: 1364 KFFSFKYFNPIQTQMFHATFHTDENILLGAPTGSGKTVIGELCILRNLLRCEGQKSVYIC 1423
Query: 127 PLKALSNQKYRELHQEFK-----DVGLMTGDVTLSPN----ASCLVMTTEILRGML--YR 175
P+KA+ N++Y+ +FK +V +TGD + ++ ++ T E L + ++
Sbjct: 1424 PMKAIVNERYKSWKSKFKSLFNKNVIELTGDKNENKENIAESNIIICTPEKLDVITRNWK 1483
Query: 176 GSEVLKEVAWVIFDEIHYMKDRERGVVWE 204
+ +K + +IFDEIH + RG V E
Sbjct: 1484 NKKFVKNINLIIFDEIHLLGQENRGGVIE 1512
Score = 50 (22.7 bits), Expect = 9.4e-06, Sum P(3) = 9.4e-06
Identities = 34/163 (20%), Positives = 70/163 (42%)
Query: 121 RVIYTSPLKALSNQKYRELHQEFKDVGL----MTGDVTLSPN----ASCLVMTTE----I 168
++IY +P+K+L + ++ K L T + +LS +V E +
Sbjct: 506 KIIYIAPMKSLVFEITNLFRKKLKIFNLNVCEYTKEYSLSSKELEQVHIIVTVPEKLDIL 565
Query: 169 LRGMLYRGS----EVLKEVAWVIFDEIHYMKDRERGVVWEESII-FLP-----PAIKMVF 218
LR Y + ++K + +I DE+H + + +RG V E + FL +I+ +
Sbjct: 566 LRNSSYSTTVSDESLIKYIKCLILDEVHLL-NTDRGDVIETIVSRFLQYSETSQSIRRIM 624
Query: 219 -LSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPV 260
+SAT+ N +++ + C+ +R L ++ +
Sbjct: 625 AMSATLPNYKDVRDFL-KVENDMCYYFNEKYRSIQLDKTLYGI 666
Score = 50 (22.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 347 MSMSKLDFNTQEEKDTV--EQVFQNAVDCLNEE 377
M+ +K+D NT + D++ + +N VD LN E
Sbjct: 2064 MNSTKIDDNTMDHVDSINGDDDKENHVDSLNVE 2096
Score = 50 (22.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 17/80 (21%), Positives = 35/80 (43%)
Query: 665 KLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVN-HEIQQL 723
K+N KDM D + + +N E E+K+ + + N + + + + + H I Q
Sbjct: 1659 KINN-KDMNEGDNNIAENINTFEYTEYKMNINRKDNIASYNNMSYYHKSSVTDEHNINQC 1717
Query: 724 KSKMRDSQIQKFRDELKNRS 743
+ D + F +K ++
Sbjct: 1718 NNN--DDNNKGFFGYMKKKT 1735
Score = 48 (22.0 bits), Expect = 9.4e-06, Sum P(3) = 9.4e-06
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 73 YSFELDPFQ----RVSVACLERNESVLVSAHTSAGKTAVA 108
Y F+ + F +V + N+++LV A T GKT +A
Sbjct: 333 YIFDFEYFNYVQSKVFNSAFRSNKNLLVCAPTGCGKTNIA 372
>RGD|1560014 [details] [associations]
symbol:Ddx60 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 60"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0003725
"double-stranded RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0009615 "response to virus" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=ISO] [GO:1900246 "positive
regulation of RIG-I signaling pathway" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1560014 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00690000102154 IPI:IPI00358301
Ensembl:ENSRNOT00000019667 Uniprot:F1M4N8
Length = 1304
Score = 159 (61.0 bits), Expect = 3.8e-15, Sum P(6) = 3.8e-15
Identities = 50/177 (28%), Positives = 85/177 (48%)
Query: 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQR--VIYTSPL 128
+ F D +QR + ++ ES ++ A TS+GKT + Y + ++ V+Y +P
Sbjct: 350 RVQDFIPDTWQRELLDVVDNYESAVIVAPTSSGKTYASYYCMEKVLKESNEGVVVYVAPT 409
Query: 129 KALSNQKYRELHQEF-KDV-------GLMTGDVTLSPNASCLVMTT----EILRGMLYRG 176
KAL NQ + + K++ G+ T D S +++T EIL +R
Sbjct: 410 KALVNQVAATVQNRYTKNMPAGEVLCGVFTSDYHHEALNSQVLITMPACFEILLLAPHRQ 469
Query: 177 SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWI 233
+ V K + +VIFDE+H + R +WE ++ + + LSAT+SN EW+
Sbjct: 470 NWV-KRIRYVIFDEVHCIGGEIRAEIWEHLLVMI--RCPFLALSATISNPQHLTEWL 523
Score = 140 (54.3 bits), Expect = 3.8e-15, Sum P(6) = 3.8e-15
Identities = 25/52 (48%), Positives = 38/52 (73%)
Query: 390 LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVF 441
L +RGI HHS + K+LVE+LF++G ++ + AT T ++G+NMP K+VVF
Sbjct: 848 LARRGIGYHHSSMTNKEKQLVEILFRKGFIRVVTATRTLSLGINMPCKSVVF 899
Score = 51 (23.0 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 225 NATQFAEWICHLH-KQPCHVVYTDFRPTPLQH 255
N T FA + HLH +P ++V+ F L H
Sbjct: 1023 NPTGFAGLVTHLHYHEPSNLVFVSFLVKGLFH 1054
Score = 45 (20.9 bits), Expect = 3.8e-15, Sum P(6) = 3.8e-15
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 316 DIFK-IVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEK 360
D F +V+ + + + P + F FS E+ A S+ + QEEK
Sbjct: 704 DFFPCLVEKLRKMEKLPAVFFLFSLDTVEECAESVCEFLEEKQEEK 749
Score = 40 (19.1 bits), Expect = 3.8e-15, Sum P(6) = 3.8e-15
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 233 ICHLHKQPCHVVYTDFRPTPLQHYVFP 259
+C H PC + TD ++ Y FP
Sbjct: 590 VCFDHFHPCAALTTDH----IEKYGFP 612
Score = 39 (18.8 bits), Expect = 3.8e-15, Sum P(6) = 3.8e-15
Identities = 11/63 (17%), Positives = 28/63 (44%)
Query: 801 IPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYV--ESTVRPFLMDV 858
+P D S + M++ + ++A+++ E +L ++ E+ E P + +
Sbjct: 1109 LPQDFSDALLEYNMQVTRDFASFLLIVSRLADMKQEYQLPLSKIEFAGKECEDSPLVSHL 1168
Query: 859 IYC 861
+ C
Sbjct: 1169 MSC 1171
Score = 38 (18.4 bits), Expect = 3.8e-15, Sum P(6) = 3.8e-15
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 477 ICIIMVDEQMEMNTLKDMVLEGQFTAEHVIKNSFHQFQYEKA 518
+ I ++ M + T D + +G+ A V+K+S F+ +A
Sbjct: 956 LSITLILRLMLLATKADDLEDGKAKALSVLKHSLLSFKQPRA 997
>TAIR|locus:2125677 [details] [associations]
symbol:AT4G32700 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006260 "DNA replication"
evidence=IEA;IGI] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IGI]
[GO:0009640 "photomorphogenesis" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IGI] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00476 PRINTS:PR00868
PROSITE:PS51194 SMART:SM00482 SMART:SM00490 GO:GO:0005524
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0006260
GO:GO:0009640 GO:GO:0006310 GO:GO:0010468 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003887 KO:K02349
OMA:EASIPEI EMBL:AB192295 IPI:IPI00570534 RefSeq:NP_001078482.1
UniGene:At.48069 ProteinModelPortal:Q588V7 SMR:Q588V7 STRING:Q588V7
PRIDE:Q588V7 EnsemblPlants:AT4G32700.2 GeneID:829406
KEGG:ath:AT4G32700 TAIR:At4g32700 HOGENOM:HOG000030860
PhylomeDB:Q588V7 ProtClustDB:CLSN2698843 Genevestigator:Q588V7
Uniprot:Q588V7
Length = 2154
Score = 180 (68.4 bits), Expect = 6.1e-15, Sum P(5) = 6.1e-15
Identities = 43/114 (37%), Positives = 64/114 (56%)
Query: 332 VIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVF---QNAVDCLNEEDRNL-PAIELM 387
V++F SR+ CE A +SKL N D F ++A+D L + P +E
Sbjct: 772 VLIFCSSRKGCESTARHISKLIKNVPVNVDGENSEFMDIRSAIDALRRSPSGVDPVLEET 831
Query: 388 LPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVF 441
LP G+A HH+GL +E+VE +++GLV+ L AT T A G+N+PA+ V+F
Sbjct: 832 LP---SGVAYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVNLPARRVIF 882
Score = 102 (41.0 bits), Expect = 6.1e-15, Sum P(5) = 6.1e-15
Identities = 41/152 (26%), Positives = 70/152 (46%)
Query: 64 VYNGE-MAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYA-IAMAFRDKQR 121
VYN + ++K Y ++++ Q V +RN ++ A TSAGK+ VAE + R +
Sbjct: 506 VYNKKGISKLYPWQVECLQ-VDGVLQKRN--LVYCASTSAGKSFVAEVLMLRRVIRTGKM 562
Query: 122 VIYTSPLKALSNQKYRELHQEFKDVGLMT-------GDVTLSPNASCLVMTTEILRGMLY 174
+ P ++ +K L + +G G TL + S V T E ++
Sbjct: 563 ALLVLPYVSICAEKAEHLEVLLEPLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLIN 622
Query: 175 RGSEV--LKEVAWVIFDEIHYMKDRERGVVWE 204
R E L E+ ++ DE+H + D+ RG + E
Sbjct: 623 RLLEEGRLSELGIIVIDELHMVGDQHRGYLLE 654
Score = 72 (30.4 bits), Expect = 6.1e-15, Sum P(5) = 6.1e-15
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 214 IKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLY 266
+++V +SATM N A+W+ + T+FRP PL+ Y+ VG S +Y
Sbjct: 690 LQIVGMSATMPNVGAVADWL------QAALYQTEFRPVPLEEYI-KVG-STIY 734
Score = 39 (18.8 bits), Expect = 6.1e-15, Sum P(5) = 6.1e-15
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 760 LKGRAACLIDTGDELLV 776
LKGR L+ DEL++
Sbjct: 2091 LKGRCRILLQVHDELVL 2107
Score = 37 (18.1 bits), Expect = 6.1e-15, Sum P(5) = 6.1e-15
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 550 LKLDIAQLEKKLMSEITRPERVL 572
L D +Q+E +LM+ +R ++
Sbjct: 1905 LTADYSQIELRLMAHFSRDSSLI 1927
>FB|FBgn0038344 [details] [associations]
symbol:CG5205 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005682 "U5 snRNP"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0006200 GO:GO:0005682 GO:GO:0003676
GO:GO:0004386 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104562 KO:K01529 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
GO:GO:0008026 GO:GO:0016779 FlyBase:FBgn0038344 RefSeq:NP_650472.2
UniGene:Dm.1213 ProteinModelPortal:Q9VF56 SMR:Q9VF56
EnsemblMetazoa:FBtr0083147 GeneID:41891 KEGG:dme:Dmel_CG5205
UCSC:CG5205-RA InParanoid:Q9VF56 PhylomeDB:Q9VF56 GenomeRNAi:41891
NextBio:826131 ArrayExpress:Q9VF56 Bgee:Q9VF56 Uniprot:Q9VF56
Length = 2183
Score = 157 (60.3 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 53/148 (35%), Positives = 80/148 (54%)
Query: 73 YSF-ELDPFQRVSVACLERNES-VLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPL 128
Y F +P Q CL ++ VL+ A T +GKT VAE AI A K +V+Y +PL
Sbjct: 1332 YKFTHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIVAEIAIFRALNQNPKCKVVYIAPL 1391
Query: 129 KALSNQKYRELHQEFK--DVGL----MTGDVTLSPNA---SCLVMTT-EILRGML--YRG 176
KAL ++ + Q F+ +GL +TGDVT A S L++TT E G+ ++
Sbjct: 1392 KALVKERIADWEQRFQRSSLGLKVVELTGDVTPDIQAIRESQLIVTTPEKWDGISRSWQT 1451
Query: 177 SEVLKEVAWVIFDEIHYMKDRERGVVWE 204
E ++ V+ ++ DEIH + + +RG V E
Sbjct: 1452 REYVQHVSLIVIDEIHLLGE-DRGPVIE 1478
Score = 130 (50.8 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 40/160 (25%), Positives = 73/160 (45%)
Query: 330 QPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCL--NEEDRNLPAIELM 387
+P IVF SRR+ A+ + K + + ++ ++ + N ++NL
Sbjct: 1567 EPTIVFVSSRRQTRLTALDLITFVAGESNPKQFLH-IPEDEIELILQNIREQNLKFC--- 1622
Query: 388 LPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKW 447
L GI +HH+GL ++ VE LF ++ L AT T A G+N+PA VV + +
Sbjct: 1623 ---LAFGIGLHHAGLQEQDRKCVEELFLNRKIQILVATATLAWGVNLPAHLVVIKGTEYF 1679
Query: 448 DGDSHRYIGSG--EYIQMSXXXXXXXXXXXXICIIMVDEQ 485
DG +Y+ + +QM + +++V ++
Sbjct: 1680 DGKVKKYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDE 1719
Score = 121 (47.7 bits), Expect = 3.6e-09, Sum P(4) = 3.6e-09
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 387 MLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKK 446
++ L G+A+HH+G+L +++VE F EG + L T T A G+N+PA V+
Sbjct: 781 LVELFSCGLAMHHAGMLRADRQMVEKYFVEGHISVLVCTATLAWGVNLPAHAVIIRGTDI 840
Query: 447 WDGDSHRYIGSG 458
+D ++ G
Sbjct: 841 YDAKHGSFVDLG 852
Score = 107 (42.7 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 44/141 (31%), Positives = 72/141 (51%)
Query: 134 QKYRELHQEFKDVGLMTGDVTLSPNA---SCLVMTT-EILRGML--YRGSEVLKEVAWVI 187
Q+++ K V L TGDVT A S L++TT E G+ ++ E ++ V+ ++
Sbjct: 1404 QRFQRSSLGLKVVEL-TGDVTPDIQAIRESQLIVTTPEKWDGISRSWQTREYVQHVSLIV 1462
Query: 188 FDEIHYMKDRERGVVWEESII---FLPP----AIKMVFLSATMSNATQFAEWICHLHKQP 240
DEIH + + +RG V E + F+ AI++V LS ++NA A W+ ++K
Sbjct: 1463 IDEIHLLGE-DRGPVIEVIVSRTNFISSHTGRAIRIVGLSTALANAQDLANWL-GINKMG 1520
Query: 241 CHVVYTDFRPTPLQHYV--FP 259
+ RP PLQ ++ FP
Sbjct: 1521 LYNFKPSVRPVPLQVHINGFP 1541
Score = 91 (37.1 bits), Expect = 3.6e-09, Sum P(4) = 3.6e-09
Identities = 31/105 (29%), Positives = 50/105 (47%)
Query: 67 GEMAKTYSFELDPFQRVSV-ACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-------- 117
G +A EL+ Q V NE++LV A T AGKT VA +I R
Sbjct: 477 GRLAFANCKELNRIQSVVFPVAYHSNENMLVCAPTGAGKTNVAMLSIVHTIRCHLEQGVI 536
Query: 118 --DKQRVIYTSPLKALSNQKYRELHQEFKDVGL----MTGDVTLS 156
D+ +++Y +P+KAL+ + + K + + +TGD+ L+
Sbjct: 537 NRDEFKIVYIAPMKALAAEMVDNFSKRLKSLQIAVRELTGDIQLT 581
Score = 67 (28.6 bits), Expect = 3.6e-09, Sum P(4) = 3.6e-09
Identities = 38/122 (31%), Positives = 56/122 (45%)
Query: 149 MTGDVTLSPN----ASCLVMTTEILRGMLYRGS---EVLKEVAWVIFDEIHYMKDRERGV 201
+TGD+ L+ LV T E + +GS ++ V +I DE+H + ERG
Sbjct: 574 LTGDIQLTKAEMAATQILVTTPEKWDVVTRKGSGDVALISLVELLIIDEVHLLHG-ERGP 632
Query: 202 VWEESI---IFLPPA----IKMVFLSATMSNATQFAEWICHLHKQPCH-VVYTD--FRPT 251
V E + + L + I++V LSAT+ N A + L P + Y D FRP
Sbjct: 633 VVEALVARTLRLVESSQSMIRIVGLSATLPNYIDVAHF---LRVNPMKGLFYFDSRFRPV 689
Query: 252 PL 253
PL
Sbjct: 690 PL 691
Score = 52 (23.4 bits), Expect = 3.6e-09, Sum P(4) = 3.6e-09
Identities = 25/98 (25%), Positives = 41/98 (41%)
Query: 752 IDADGVVQLKGRAACLIDTGDELLVTELM-FNGTFNDLDHHQVAALASCFIPVDKSSEQI 810
++ D ++ + R A ++ L +M FN D++ + AS F + E
Sbjct: 950 LEKDPTLEAR-RRALIMSAAMSLDKARMMRFNQRTMDMNITDLGRTASYFYIKYDTVETF 1008
Query: 811 NLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVE 848
N EL KP E I++ Q +L+V DE E
Sbjct: 1009 N---ELMKPFMTQAEILAMISQAQEFQQLKVRDDEMEE 1043
>UNIPROTKB|H7C4L3 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] InterPro:IPR012961 Pfam:PF08148
GO:GO:0005524 EMBL:AL645922 GO:GO:0016818 HGNC:HGNC:10898
ChiTaRS:SKIV2L ProteinModelPortal:H7C4L3 PRIDE:H7C4L3
Ensembl:ENST00000491994 Uniprot:H7C4L3
Length = 182
Score = 198 (74.8 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 49/158 (31%), Positives = 88/158 (55%)
Query: 711 QRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDT 770
+ + ++ E+++L+ + D + E R VL+ LG++D G V+L GR AC + +
Sbjct: 27 RERMQIQKEMERLRFLLSDQSLLLL-PEYHQRVEVLRTLGYVDEAGTVKLAGRVACAMSS 85
Query: 771 GDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQINLRMELAKPLQQLQESA 827
ELL+TELMF+ + L ++AAL S C P D + N L + +++++ A
Sbjct: 86 -HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNT---LKQGIERVRAVA 141
Query: 828 RKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKG 865
++I E+Q C L V+E+V + L++V+Y W++G
Sbjct: 142 KRIGEVQVACGLNQTVEEFV-GELNFGLVEVVYEWARG 178
>UNIPROTKB|Q5H9U9 [details] [associations]
symbol:DDX60L "Probable ATP-dependent RNA helicase
DDX60-like" species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 HOGENOM:HOG000169263 HOVERGEN:HBG107797
EMBL:AL832950 EMBL:CR933601 EMBL:AC079926 EMBL:AC093888
EMBL:AK055595 IPI:IPI00853133 IPI:IPI00935252 RefSeq:NP_001012985.1
UniGene:Hs.535011 ProteinModelPortal:Q5H9U9 STRING:Q5H9U9
PhosphoSite:Q5H9U9 DMDM:74755482 PaxDb:Q5H9U9 PRIDE:Q5H9U9
Ensembl:ENST00000260184 Ensembl:ENST00000505890
Ensembl:ENST00000511577 GeneID:91351 KEGG:hsa:91351 UCSC:uc003irq.4
CTD:91351 GeneCards:GC04M169277 HGNC:HGNC:26429 HPA:HPA043211
neXtProt:NX_Q5H9U9 PharmGKB:PA162383445 InParanoid:Q5H9U9
OMA:AQDSVYL GenomeRNAi:91351 NextBio:77184 ArrayExpress:Q5H9U9
Bgee:Q5H9U9 CleanEx:HS_DDX60L Genevestigator:Q5H9U9 Uniprot:Q5H9U9
Length = 1706
Score = 141 (54.7 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 34/75 (45%), Positives = 47/75 (62%)
Query: 390 LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDG 449
L +RGI HHS + KE VE+LF +GL++ + ATET A+G++MP K+VVF
Sbjct: 1240 LAQRGIGYHHSSMYFKEKEFVEILFVKGLIRVVTATETLALGIHMPCKSVVFAQ------ 1293
Query: 450 DSHRYIGSGEYIQMS 464
DS Y+ + Y QMS
Sbjct: 1294 DSV-YLDALNYRQMS 1307
Score = 141 (54.7 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 45/177 (25%), Positives = 81/177 (45%)
Query: 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQR--VIYTSPL 128
+ F + +Q+ + +++NES ++ A TS+GKT + Y + R+ V+Y +P
Sbjct: 738 RVQDFIPNAWQQELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLRESDVGVVVYVAPA 797
Query: 129 KALSNQKYRELHQEFKDV--------GLMTGDVTLSP-NASCLVMTTEILRGMLY--RGS 177
K+L Q + F G T D + N L+ E +L
Sbjct: 798 KSLVGQVAATVENRFTKTLPAGRTLCGAFTRDYCHNVLNCQVLITVPECFEILLLAPHRQ 857
Query: 178 EVLKEVAWVIFDEIHYMKDRERGV-VWEESIIFLPPAIKMVFLSATMSNATQFAEWI 233
+ ++ + +VIFDE+HY+ RE G WE ++ + + LSAT++N +W+
Sbjct: 858 KWVERIRYVIFDEVHYL-GREVGAKFWELLLVII--RCPFLVLSATINNPNLLTKWL 911
Score = 52 (23.4 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 35/170 (20%), Positives = 70/170 (41%)
Query: 214 IKMVFLSATMSNATQFAEWICHLH-KQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEK 272
IK +L+ N +FA +LH +P ++V+ +F L H + G
Sbjct: 1405 IKEDYLNKK-GNPKKFAGLASYLHGHEPSNLVFVNFLKRGLFHNLCKPAWKG-------S 1456
Query: 273 EQFREDNFVKL----QDTFLKQKIGGRRENXXXXXXXXXXXXXXXXXDIFKIV----KMI 324
+QF +D KL + F ++ I + +N D FK +
Sbjct: 1457 QQFSQDVMEKLVLVLANLFGRKYIPAKFQNANLSFSQSKVILAELPED-FKAALYEYNLA 1515
Query: 325 MERKFQP-VIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDC 373
+ + F +++ S S ++H + +S++ F +E +D+ Q+ + + C
Sbjct: 1516 VMKDFASFLLIASKSVNMKKEHQLPLSRIKFTGKECEDS--QLVSHLMSC 1563
Score = 40 (19.1 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 712 RKAEVNHEIQQLKSKMRDSQIQKFRDELKNRS 743
RK E N + + L + +++ Q++K + LKN S
Sbjct: 1050 RKYEENLKAE-LTNWIKNGQVKKVKRVLKNLS 1080
>UNIPROTKB|H0YAC4 [details] [associations]
symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] InterPro:IPR012961
Pfam:PF08148 GO:GO:0005524 GO:GO:0016818 HGNC:HGNC:18734
ChiTaRS:SKIV2L2 EMBL:AC010480 EMBL:AC020728 Ensembl:ENST00000508716
Uniprot:H0YAC4
Length = 72
Score = 192 (72.6 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 36/59 (61%), Positives = 45/59 (76%)
Query: 855 LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFA 913
LMDV+Y W+ GATFA + +MTD+FEGSIIR RRL+E L Q+ AA+A+G LE KFA
Sbjct: 2 LMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFA 60
>UNIPROTKB|G4MUH1 [details] [associations]
symbol:MGG_07250 "DEAD/DEAH box helicase" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM001232
GO:GO:0008026 RefSeq:XP_003715470.1 EnsemblFungi:MGG_07250T0
GeneID:2682996 KEGG:mgr:MGG_07250 Uniprot:G4MUH1
Length = 1771
Score = 136 (52.9 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 40/137 (29%), Positives = 68/137 (49%)
Query: 134 QKYRELHQEFKDV-GLMTGDVTLSPNASCLVMTT--EILRGMLYRGSEVLKEVAW----- 185
+K+R ++E + V + T D ++ C ++ T IL+ ML V K +W
Sbjct: 785 KKFR--YEESRSVWAIHTRDYRVNNPTGCQILVTVPHILQIMLLSPPNVEKANSWAHRIK 842
Query: 186 -VIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCH-- 242
+IFDE+H + + GVVWE+ ++ P I + LSAT+ N +F W+ K H
Sbjct: 843 RIIFDEVHCIGQAQEGVVWEQLLLLAPCPI--IALSATVGNPQEFVAWLSESQKTKGHDL 900
Query: 243 -VVYTDFRPTPLQHYVF 258
+V R + L+ Y++
Sbjct: 901 ELVEHKARYSDLRKYIY 917
Score = 135 (52.6 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 33/109 (30%), Positives = 57/109 (52%)
Query: 337 FSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIEL---MLPLLKR 393
F R E ++ + D K + + + L E R+L + L + L+R
Sbjct: 1156 FVREEGQEEVSNWQSFDPQAPLAKFSFSDSRKCQREDLEELIRSLNWVNLDPVFIEALRR 1215
Query: 394 GIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFT 442
G+ VHH+G+ +++VE+L + G + + AT T A+G+N+P KTVVF+
Sbjct: 1216 GVGVHHAGMNRKYRQVVEMLCRRGFLTVVIATGTLALGINVPCKTVVFS 1264
Score = 116 (45.9 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 39/126 (30%), Positives = 59/126 (46%)
Query: 74 SFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAI--AMAFRDKQRVIYTSPLKAL 131
SF D +QR + ++ +S+ V A TSAGKT ++ YA+ M D ++Y +P KAL
Sbjct: 712 SFNPDAWQRKVLDAIDAKKSLCVIAPTSAGKTFISFYAMKKVMQSSDNDVLVYVAPTKAL 771
Query: 132 SNQKYRELHQEFKDV----------GLMTGDVTLSPNASCLVMTT--EILRGMLYRGSEV 179
NQ E+ FK + T D ++ C ++ T IL+ ML V
Sbjct: 772 VNQIAAEVQGRFKKKFRYEESRSVWAIHTRDYRVNNPTGCQILVTVPHILQIMLLSPPNV 831
Query: 180 LKEVAW 185
K +W
Sbjct: 832 EKANSW 837
Score = 57 (25.1 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 318 FKIVKMIMERKFQPVIVFSFSRRECEQHAMSM-SKLDFNTQEEKDTVEQ 365
F+++ + +R+ P I+F++ R +CE S+ S+L + E K T ++
Sbjct: 1067 FQLLLDLHQRQGLPAIIFNYDRMKCESIMKSVISELKRHELEWKKTSKE 1115
>RGD|1584010 [details] [associations]
symbol:Hfm1 "HFM1, ATP-dependent DNA helicase homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1584010 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0008026
GeneTree:ENSGT00550000074822 IPI:IPI00766186
Ensembl:ENSRNOT00000033794 UCSC:RGD:1584010 Uniprot:F1LWY1
Length = 954
Score = 135 (52.6 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 44/158 (27%), Positives = 78/158 (49%)
Query: 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRD------KQRVIYTSPLKALSNQKYRELHQ 141
L + + ++ A T +GKT V E AI + +V+Y +P+KAL +Q++ + +
Sbjct: 24 LYTDRNFVICAPTGSGKTVVFELAITRLLMEAPLPWLNMKVVYMAPIKALCSQRFDDWKE 83
Query: 142 EFKDVGL----MTGDVTLSP-----NASCLVMTTEILRGML--YRGSEVLKEVAWVIFDE 190
+F +GL +TGD + +A+ ++ T E M +R + ++ V + DE
Sbjct: 84 KFGPIGLTCKELTGDTVMDDLFEIQHANIIMTTPEKWDSMTRKWRDNSFIQLVRLFLIDE 143
Query: 191 IHYMKDRERGVVWEESIIFLPPAIKMV-FLSATMSNAT 227
+H +KD RG E + +K V LS T+ NA+
Sbjct: 144 VHVIKDENRGPTLEVVV----SRMKTVQSLSKTLENAS 177
Score = 130 (50.8 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 40/147 (27%), Positives = 68/147 (46%)
Query: 317 IFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNE 376
++ +++ ++K P +VF +R+ +Q A + K + TVEQ + +
Sbjct: 247 VYSVIRTYSDQK--PTLVFCATRKGVQQAASVLVK----DAKFIITVEQKLRLQKSAYSI 300
Query: 377 EDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPA 436
D L L G+ HH+G+ ++LVE LF G + LF T T AMG+N+PA
Sbjct: 301 RDSKLK------DTLVYGVGYHHAGMELSDRKLVEELFTSGDLPVLFTTSTLAMGVNLPA 354
Query: 437 KTVVFTAVKKWDGDSHRYIGSGEYIQM 463
VV + + G + + +QM
Sbjct: 355 HLVVIKSTMHYTGGAFEEYSETDILQM 381
Score = 83 (34.3 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 33/121 (27%), Positives = 54/121 (44%)
Query: 158 NASCLVMTTEILRGML--YRGSEVLKEVAWVIFDEIHYMKDRERGVVWE------ESIIF 209
+A+ ++ T E M +R + ++ V + DE+H +KD RG E +++
Sbjct: 109 HANIIMTTPEKWDSMTRKWRDNSFIQLVRLFLIDEVHVIKDENRGPTLEVVVSRMKTVQS 168
Query: 210 L--------PPAIKMVFLSATMSNATQFAEWICHLHKQP-CHVVYTDFRPTPLQHYV--F 258
L P ++ V +SAT+ NA AEW+ + C + RP LQ V F
Sbjct: 169 LSKTLENASPAPVRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVVLGF 228
Query: 259 P 259
P
Sbjct: 229 P 229
>DICTYBASE|DDB_G0278827 [details] [associations]
symbol:DDB_G0278827 "Probable ATP-dependent RNA
helicase DDX60" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0278827 GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
EMBL:AAFI02000024 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG4581 RefSeq:XP_641993.1
ProteinModelPortal:Q54XN7 EnsemblProtists:DDB0206223 GeneID:8621725
KEGG:ddi:DDB_G0278827 InParanoid:Q54XN7 OMA:RESALIC Uniprot:Q54XN7
Length = 1816
Score = 116 (45.9 bits), Expect = 3.8e-13, Sum P(4) = 3.8e-13
Identities = 37/125 (29%), Positives = 64/125 (51%)
Query: 319 KIVKMIMERKFQPVIVFSFSRREC-EQHAMSMSKLDFNTQEEKDTVEQVFQNAVDC-LNE 376
K + +++ER FQ + + + E + M + +L + D ++ F N + ++E
Sbjct: 1197 KQLDLVIER-FQKSLGRALADLEPNDPEKMELERLKAK-RASLDYLKPQFGNLLSSDIDE 1254
Query: 377 EDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPA 436
+ + P + P L +GIA HH G VE LF+ ++ +FAT T A+G+N PA
Sbjct: 1255 KVKKDP----LAPALTQGIAAHHGGCDKNYLRNVEYLFRSKKIQVVFATSTLAVGVNAPA 1310
Query: 437 KTVVF 441
K+ VF
Sbjct: 1311 KSSVF 1315
Score = 104 (41.7 bits), Expect = 3.8e-13, Sum P(4) = 3.8e-13
Identities = 25/93 (26%), Positives = 46/93 (49%)
Query: 144 KDVGLMTGDVTLSPNASCLVMTTEILRGMLY---RGSEVLKEVAWVIFDEIHYMKDRERG 200
K VG+ T D L+ +++T +L+ + ++ ++IFDE+H + G
Sbjct: 901 KMVGVFTRDFRLNIETCQILITVPQCLEILFLSIMNTHFIQRCRYIIFDEVHQIASSVDG 960
Query: 201 VVWEESIIFLPPAIKMVFLSATMSNATQFAEWI 233
+WE ++F P + LSAT+ N T F ++
Sbjct: 961 AIWERLLVFNPAPF--LALSATLGNLTDFHNFL 991
Score = 100 (40.3 bits), Expect = 3.8e-13, Sum P(4) = 3.8e-13
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 68 EMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQR--VIYT 125
E ++ F+ D +Q + +++ ES L+ A TS+GKT ++ Y ++ V++
Sbjct: 809 EDSRVRHFKPDAWQVELLDIVDKRESALICASTSSGKTFISFYCFEQILKESNDGIVVFV 868
Query: 126 SPLKALSNQKYREL 139
P KAL NQ Y E+
Sbjct: 869 CPTKALVNQMYAEV 882
Score = 48 (22.0 bits), Expect = 3.8e-13, Sum P(4) = 3.8e-13
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 699 NKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQ 731
NKS +EN+++ + + E E ++ K K ++ +
Sbjct: 1393 NKSNEENKVQVKENEKEREKEKEKEKEKEKEKE 1425
Score = 46 (21.3 bits), Expect = 3.3e-06, Sum P(4) = 3.3e-06
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 316 DIFKIVKMIMERKFQPVIVFSFSRRECEQHA 346
+I IV + ++ P + FSF+R C + A
Sbjct: 1146 EITNIVLELQKQDLLPALFFSFNRSLCSRLA 1176
>POMBASE|SPBC13G1.10c [details] [associations]
symbol:mug81 "ATP-dependent RNA helicase Slh1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:2000765 "regulation of
cytoplasmic translation" evidence=ISS] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 PomBase:SPBC13G1.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0007126 GO:GO:2000765
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 HOGENOM:HOG000157749 GO:GO:0004004 PIR:T39411
RefSeq:NP_596560.1 ProteinModelPortal:O60072 PRIDE:O60072
EnsemblFungi:SPBC13G1.10c.1 GeneID:2539673 KEGG:spo:SPBC13G1.10c
OMA:RKPTGEG OrthoDB:EOG4H75KM NextBio:20800827 Uniprot:O60072
Length = 1935
Score = 143 (55.4 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
Identities = 46/157 (29%), Positives = 82/157 (52%)
Query: 62 NPVYNGEMAKTYSFELDPFQRVSVACLERNES-VLVSAHTSAGKTAVAEYAIAMAFRD-- 118
+PV G AK +SF + Q + ++ + V A T +GKT AE A A +
Sbjct: 1121 DPVLEGICAKRFSF-FNAVQTQFFHTIYHTDTNIFVGAPTGSGKTMAAELATWRALHNYP 1179
Query: 119 KQRVIYTSPLKALSNQKYREL-HQEFKDVGL----MTGD----VTLSPNASCLVMTTEIL 169
K +V+Y +P+KAL ++ ++ H+ + +G+ +TGD V NA+ ++ T E
Sbjct: 1180 KSKVVYIAPMKALVKERVKDWGHRLVEPMGISMIELTGDTNPDVKAVTNANIIITTPEKW 1239
Query: 170 RGML--YRGSEVLKEVAWVIFDEIHYMKDRERGVVWE 204
G+ ++ + +++V+ +I DEIH + +RG V E
Sbjct: 1240 DGITRSWKSRKYVQDVSLIILDEIHLLGS-DRGPVLE 1275
Score = 138 (53.6 bits), Expect = 9.0e-09, Sum P(4) = 9.0e-09
Identities = 38/140 (27%), Positives = 70/140 (50%)
Query: 319 KIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEED 378
K++K+I E V++F SR+E A + + F+ + E D ++ Q+ L + D
Sbjct: 516 KVLKLIQEG--HQVMIFVHSRKETINSAKKLREQFFH-EGEADLLDNS-QHEKYSLAQRD 571
Query: 379 RNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKT 438
+ + + L K + +H++G+L + L E LF G++K L T T A G+N+PA
Sbjct: 572 VSKSKNKELKELFKYSMGIHNAGMLRSDRHLTERLFSMGILKILCCTATLAWGVNLPAYA 631
Query: 439 VVFTAVKKWDGDSHRYIGSG 458
V+ + +D ++ G
Sbjct: 632 VLIKGTQLYDPQKGSFVDLG 651
Score = 126 (49.4 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
Identities = 40/122 (32%), Positives = 62/122 (50%)
Query: 330 QPVIVFSFSRRECEQHA---MSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIEL 386
QPV++F SRR+ A ++ L+ N + E+ + V ED++L +L
Sbjct: 1363 QPVLIFVSSRRQTRLTAKDLIAFCGLEDNPRRFLYMDEEELEMIVS--EVEDKSL---KL 1417
Query: 387 MLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKK 446
LP GIA+HH+GL +++ E LF V+ L AT T A G+N PA V+ +
Sbjct: 1418 ALPF---GIALHHAGLTENDRKISEELFVNNKVQILIATSTLAWGVNTPAHLVIVKGTEY 1474
Query: 447 WD 448
+D
Sbjct: 1475 YD 1476
Score = 95 (38.5 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 29/102 (28%), Positives = 53/102 (51%)
Query: 117 RDKQRVIYTSPLKALSNQKYRELHQEFKDVGL----MTGDVTLSPN----ASCLVMTTE- 167
RD +++Y +P+KAL+ + ++ + +GL +TGD+ L+ LV T E
Sbjct: 338 RDDFKIVYIAPMKALAAEVVEKMGKRLAWLGLKTRELTGDMQLTKTEIAETQILVTTPEK 397
Query: 168 --ILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESI 207
++ +++ ++V VI DE+H + D ERG V E +
Sbjct: 398 WDVVTRKSVGDTQLAEKVRLVIIDEVHMLHD-ERGAVIESLV 438
Score = 87 (35.7 bits), Expect = 9.0e-09, Sum P(4) = 9.0e-09
Identities = 40/151 (26%), Positives = 69/151 (45%)
Query: 149 MTGDVTLSPN----ASCLVMTTE---ILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGV 201
+TGD+ L+ LV T E ++ +++ ++V VI DE+H + D ERG
Sbjct: 374 LTGDMQLTKTEIAETQILVTTPEKWDVVTRKSVGDTQLAEKVRLVIIDEVHMLHD-ERGA 432
Query: 202 VWEESIIFLP-------PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPL- 253
V E + I++V LSAT+ N A+++ + + FRP P+
Sbjct: 433 VIESLVARTQRLVETSQQMIRIVGLSATLPNYLDVADFLGVNRYKGLFYFSSAFRPCPIE 492
Query: 254 QHYVFPVGGSGLYLVVDEK-EQFREDNFVKL 283
QH++ G G +V+ ++ D +KL
Sbjct: 493 QHFI---GAKGSPKIVNSNIDEACFDKVLKL 520
Score = 86 (35.3 bits), Expect = 8.7e-08, Sum P(3) = 8.7e-08
Identities = 30/119 (25%), Positives = 60/119 (50%)
Query: 152 DVTLSPNASCLVMTTEILRGML--YRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF 209
DV NA+ ++ T E G+ ++ + +++V+ +I DEIH + +RG V E +
Sbjct: 1222 DVKAVTNANIIITTPEKWDGITRSWKSRKYVQDVSLIILDEIHLLGS-DRGPVLEMIVSR 1280
Query: 210 LP-------PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYV--FP 259
+ ++++ LS ++NA A W+ ++ + ++ RP PL+ Y+ FP
Sbjct: 1281 MNYVASQTNKKVRVLGLSTAVANANDLANWL-NIRDGLFNFRHS-VRPVPLEIYIDGFP 1337
Score = 57 (25.1 bits), Expect = 9.0e-09, Sum P(4) = 9.0e-09
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE-FKDV 146
NE++L+ A T AGKT VA A+ + Y + + + ++H++ FK V
Sbjct: 293 NENMLICAPTGAGKTDVALLAMLQTISN-----YVESMNLMDESEPLDVHRDDFKIV 344
Score = 42 (19.8 bits), Expect = 9.0e-09, Sum P(4) = 9.0e-09
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 711 QRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRS 743
Q K+ N E ++L+S M +S + RD + N S
Sbjct: 832 QIKSREN-EHRELESLMENSSPCQLRDSISNTS 863
>SGD|S000000974 [details] [associations]
symbol:BRR2 "RNA-dependent ATPase RNA helicase (DEIH box)"
species:4932 "Saccharomyces cerevisiae" [GO:0005682 "U5 snRNP"
evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA;IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000388 "spliceosome
conformational change to release U4 (or U4atac) and U1 (or U11)"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 SGD:S000000974
GO:GO:0005524 GO:GO:0005681 GO:GO:0005682 GO:GO:0003676
EMBL:BK006939 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104562 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
EMBL:U18922 KO:K12854 OrthoDB:EOG4MD17F GO:GO:0046540 GO:GO:0004004
PIR:S50675 RefSeq:NP_011099.1 PDB:3HIB PDB:3IM1 PDB:3IM2
PDBsum:3HIB PDBsum:3IM1 PDBsum:3IM2 ProteinModelPortal:P32639
SMR:P32639 DIP:DIP-850N IntAct:P32639 MINT:MINT-606933
STRING:P32639 PaxDb:P32639 EnsemblFungi:YER172C GeneID:856919
KEGG:sce:YER172C CYGD:YER172c OMA:RDTHESS EvolutionaryTrace:P32639
NextBio:983377 Genevestigator:P32639 GermOnline:YER172C
GO:GO:0000388 Uniprot:P32639
Length = 2163
Score = 137 (53.3 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 53/197 (26%), Positives = 92/197 (46%)
Query: 319 KIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEED 378
K+++ I E +IVF SR+E + A + N E++ ++ +N D +++
Sbjct: 729 KVLESINEGN--QIIVFVHSRKETSRTATWLK----NKFAEENITHKLTKN--DAGSKQI 780
Query: 379 RNLPAIELMLPLLKR----GIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNM 434
A ++ P L++ GI HH+GL + L E LF +GL++ L T T A G+N+
Sbjct: 781 LKTEAANVLDPSLRKLIESGIGTHHAGLTRSDRSLSEDLFADGLLQVLVCTATLAWGVNL 840
Query: 435 PAKTVVF--TAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDE---QMEMN 489
PA TV+ T V + S + + +QM II+ D+ Q ++
Sbjct: 841 PAHTVIIKGTDVYSPEKGSWEQLSPQDVLQMLGRAGRPRYDTFGEGIIITDQSNVQYYLS 900
Query: 490 TLKDMV-LEGQFTAEHV 505
L + +E QF ++ V
Sbjct: 901 VLNQQLPIESQFVSKLV 917
Score = 127 (49.8 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 59/208 (28%), Positives = 96/208 (46%)
Query: 77 LDPFQ-RVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF------RDKQ------RVI 123
L+P Q +V A E + ++L+ A T +GKT +A + A + K+ +++
Sbjct: 499 LNPIQSKVFHAAFEGDSNMLICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIV 558
Query: 124 YTSPLKALSNQKYRELHQEFKDVGL----MTGDVTLS----PNASCLVMTTEILRGMLYR 175
Y +PLKAL ++ RE + +G+ +TGD LS LV T E + R
Sbjct: 559 YIAPLKALVQEQVREFQRRLAFLGIKVAELTGDSRLSRKQIDETQVLVSTPEKW-DITTR 617
Query: 176 GSE---VLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIK-------MVFLSATMSN 225
S +++ V +I DEIH + D +RG V E + A K ++ LSAT+ N
Sbjct: 618 NSNNLAIVELVRLLIIDEIHLLHD-DRGPVLESIVARTFWASKYGQEYPRIIGLSATLPN 676
Query: 226 ATQFAEWICHLHKQPCHVVYTDFRPTPL 253
++ + K+ + FRP PL
Sbjct: 677 YEDVGRFL-RVPKEGLFYFDSSFRPCPL 703
Score = 78 (32.5 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 26/98 (26%), Positives = 46/98 (46%)
Query: 367 FQNAV--DCLN-EEDRNLPAIE------LMLPLLKRGIAVHHSGLLPVIKELVELLFQEG 417
F A+ D LN EE++ +P IE L PL K G+ + + G+ + +V+ L++ G
Sbjct: 1601 FSKAIEWDMLNVEEEQIVPYIEKLTDGHLRAPL-KHGVGILYKGMASNDERIVKRLYEYG 1659
Query: 418 LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYI 455
V L ++ + V+ +DG H+Y+
Sbjct: 1660 AVSVLLISKDCS-AFACKTDEVIILGTNLYDGAEHKYM 1696
Score = 54 (24.1 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 29/119 (24%), Positives = 52/119 (43%)
Query: 729 DSQIQKFRDELKNRSR-VLKK--LGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTF 785
D Q++KFR+ L + + +LK+ L DA+ V A L + + +
Sbjct: 963 DGQLKKFRESLVHSALCILKEQELVLYDAENDVI---EATDLGNIASSFYINHASMDVYN 1019
Query: 786 NDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESAR-KIAEIQNECKLEVNV 843
+LD H + + + +++R E + L+QL E A I E ++ +VNV
Sbjct: 1020 RELDEHTTQIDLFRIFSMSEEFKYVSVRYEEKRELKQLLEKAPIPIREDIDDPLAKVNV 1078
Score = 41 (19.5 bits), Expect = 9.8e-11, Sum P(4) = 9.8e-11
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 815 ELAKPLQQLQESARKIAEIQNECKLEVNVD 844
++ PL+Q+ KI E +CK E+NV+
Sbjct: 1989 DVDNPLRQIPHFNNKILE---KCK-EINVE 2014
Score = 41 (19.5 bits), Expect = 9.8e-11, Sum P(4) = 9.8e-11
Identities = 18/91 (19%), Positives = 38/91 (41%)
Query: 489 NTLKDMVLEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYH 548
N ++ E + +E I SF+ F+ K P LE + S G + +E
Sbjct: 1287 NFFLTLISENWWHSEFEIPVSFNGFKLPKKFPP---PTPLLENISISTSELGNDDFSEVF 1343
Query: 549 KLKLDIAQLEKKLMSEITRPERVLYYLGSGR 579
+ K +++ ++ + ++ +GSG+
Sbjct: 1344 EFKT-FNKIQSQVFESLYNSNDSVF-VGSGK 1372
>UNIPROTKB|E2QVY0 [details] [associations]
symbol:ASCC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005794
GO:GO:0006307 GO:GO:0008283 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 Ensembl:ENSCAFT00000005717
Uniprot:E2QVY0
Length = 1925
Score = 144 (55.7 bits), Expect = 3.4e-12, Sum P(3) = 3.4e-12
Identities = 41/129 (31%), Positives = 65/129 (50%)
Query: 330 QPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTV---EQVFQNAVDCLNEEDRNLPAIEL 386
+PV++F SRR+ A+ + ++ K + E+ +N + L D NL +L
Sbjct: 1556 KPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEREMENIIGTLR--DSNL---KL 1610
Query: 387 MLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKK 446
L GI +HH+GL ++ VE LF V+ L AT T A G+N PA V+ +
Sbjct: 1611 TLAF---GIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEY 1667
Query: 447 WDGDSHRYI 455
+DG + RY+
Sbjct: 1668 YDGKTRRYV 1676
Score = 126 (49.4 bits), Expect = 3.4e-12, Sum P(3) = 3.4e-12
Identities = 47/147 (31%), Positives = 72/147 (48%)
Query: 73 YSFE-LDPFQRVSVACLERNE-SVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPL 128
Y+F +P Q L + +VL+ A T +GKT AE AI F + +Y +PL
Sbjct: 1322 YNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPL 1381
Query: 129 KALSNQKYRE----LHQEF-KDVGLMTGDVTLS----PNASCLVMTTEILRGML--YRGS 177
KAL ++ + + ++ K V +TGDVT A +V T E G+ ++
Sbjct: 1382 KALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNR 1441
Query: 178 EVLKEVAWVIFDEIHYMKDRERGVVWE 204
+K+V +I DEIH + + ERG V E
Sbjct: 1442 NYVKQVTILIIDEIHLLGE-ERGPVLE 1467
Score = 114 (45.2 bits), Expect = 4.5e-05, Sum P(3) = 4.5e-05
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 390 LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDG 449
L G ++HH+G+L + LVE LF G +K L T T A G+N+PA V+ + +
Sbjct: 774 LFPDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAA 833
Query: 450 DSHRYIGSG 458
++ G
Sbjct: 834 KRGSFVDLG 842
Score = 105 (42.0 bits), Expect = 4.6e-10, Sum P(3) = 4.6e-10
Identities = 39/131 (29%), Positives = 64/131 (48%)
Query: 144 KDVGLMTGDVTLS----PNASCLVMTTEILRGML--YRGSEVLKEVAWVIFDEIHYMKDR 197
K V +TGDVT A +V T E G+ ++ +K+V +I DEIH + +
Sbjct: 1402 KKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGE- 1460
Query: 198 ERGVVWEESII---FLPP----AIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP 250
ERG V E + F+ +++V LS ++NA A+W+ ++H+ RP
Sbjct: 1461 ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWL-NIHQMGLFNFRPSVRP 1519
Query: 251 TPLQHYV--FP 259
PL+ ++ FP
Sbjct: 1520 VPLEVHIQGFP 1530
Score = 86 (35.3 bits), Expect = 3.7e-08, Sum P(3) = 3.7e-08
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 91 NESVLVSAHTSAGKTAVAEYAIAMAFRD--KQ--------RVIYTSPLKALSNQKYRELH 140
NE++L+ A T AGKT +A + R +Q +++Y +P+KAL+ +
Sbjct: 492 NENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTNYFS 551
Query: 141 QEFKDVGL----MTGDVTLSPNASCLVMTTEIL 169
+ + +G+ +TGD+ LS N ++ T++L
Sbjct: 552 KRLEPLGIVVKELTGDMQLSKNE---ILRTQML 581
Score = 42 (19.8 bits), Expect = 3.4e-12, Sum P(3) = 3.4e-12
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 504 HVIKNSFHQFQYEKALPDIGKKVS-KLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLM 562
H N F EK+L ++ ++ E+ S++ +A Y+ LK ++ K+ +
Sbjct: 1777 HDSVNKFLSSLVEKSLVELEHSYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFKERL 1836
Query: 563 SEITRPERVLYYL 575
E +L L
Sbjct: 1837 KPECGTEELLSIL 1849
>MGI|MGI:1925237 [details] [associations]
symbol:Ascc3 "activating signal cointegrator 1 complex
subunit 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0032508 "DNA duplex unwinding" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 MGI:MGI:1925237 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:10973 GeneTree:ENSGT00700000104562 KO:K01529
OMA:FPGKHYC GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AC137877 EMBL:AC153529
EMBL:AC159114 EMBL:BC032189 EMBL:BC059917 EMBL:AK021027
EMBL:AK052745 IPI:IPI00553687 RefSeq:NP_932124.2 UniGene:Mm.222497
PRIDE:E9PZJ8 Ensembl:ENSMUST00000035606 GeneID:77987 KEGG:mmu:77987
HOGENOM:HOG000157749 NextBio:347945 Bgee:E9PZJ8 Uniprot:E9PZJ8
Length = 2198
Score = 143 (55.4 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 41/129 (31%), Positives = 64/129 (49%)
Query: 330 QPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTV---EQVFQNAVDCLNEEDRNLPAIEL 386
+PV++F SRR+ A+ + ++ K + EQ N + + D NL +L
Sbjct: 1557 KPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEQEMDNIIGTVR--DSNL---KL 1611
Query: 387 MLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKK 446
L GI +HH+GL ++ VE LF V+ L AT T A G+N PA V+ +
Sbjct: 1612 TLAF---GIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEY 1668
Query: 447 WDGDSHRYI 455
+DG + RY+
Sbjct: 1669 YDGKTRRYV 1677
Score = 120 (47.3 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 46/147 (31%), Positives = 72/147 (48%)
Query: 73 YSFE-LDPFQRVSVACLERNE-SVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPL 128
Y+F +P Q L + +VL+ A T +GKT AE AI F + +Y +PL
Sbjct: 1323 YNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPL 1382
Query: 129 KALSNQKYRE----LHQEF-KDVGLMTGDVTLS----PNASCLVMTTEILRGML--YRGS 177
KAL ++ + + ++ K V +TGDVT A +V T E G+ ++
Sbjct: 1383 KALVRERMDDWKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNR 1442
Query: 178 EVLKEVAWVIFDEIHYMKDRERGVVWE 204
+++V +I DEIH + + ERG V E
Sbjct: 1443 SYVQQVNILIIDEIHLLGE-ERGPVLE 1468
Score = 117 (46.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 37/130 (28%), Positives = 62/130 (47%)
Query: 332 VIVFSFSRRECEQHAMSMSKLDFNTQEEK---DTVEQVFQNAVDCLNEEDRNLPAIELML 388
V+VF +R + AMS+ + N+ + T + +A+ + ++ RN EL
Sbjct: 719 VMVFVHARNATVRTAMSLIERAKNSGQISCFLPTEGPEYGHALKQV-QKSRNKQVRELF- 776
Query: 389 PLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448
G ++HH+G+L + LVE LF G +K L T T A G+N+PA VV + +
Sbjct: 777 ---SDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYA 833
Query: 449 GDSHRYIGSG 458
++ G
Sbjct: 834 AKRGSFVDLG 843
Score = 90 (36.7 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 37/131 (28%), Positives = 63/131 (48%)
Query: 144 KDVGLMTGDVTLS----PNASCLVMTTEILRGML--YRGSEVLKEVAWVIFDEIHYMKDR 197
K V +TGDVT A +V T E G+ ++ +++V +I DEIH + +
Sbjct: 1403 KKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGE- 1461
Query: 198 ERGVVWEESII---FLPP----AIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP 250
ERG V E + F+ +++V LS ++NA A+W+ ++ + RP
Sbjct: 1462 ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWL-NIKQMGLFNFRPSVRP 1520
Query: 251 TPLQHYV--FP 259
PL+ ++ FP
Sbjct: 1521 VPLEVHIQGFP 1531
Score = 83 (34.3 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 38/157 (24%), Positives = 74/157 (47%)
Query: 31 QRNLTRSCVHEVAVPSGYALT---KDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSV-A 86
QR T+ EV +P G + +++ ++ + V G++A L+ Q +
Sbjct: 432 QRENTK-LYEEVRIPYGEPMPVGFEEKPVYIKDLDEV--GQLAFKGMKRLNRIQSIVFET 488
Query: 87 CLERNESVLVSAHTSAGKTAVAEYAIAMAFRD-------KQ---RVIYTSPLKALSNQKY 136
NE++L+ A T AGKT +A I R K+ +++Y +P+KAL+ +
Sbjct: 489 AYNTNENMLICAPTGAGKTNIAMLTILHEIRQHFHQGVIKKNEFKIVYVAPMKALAAEMT 548
Query: 137 RELHQEFKDVGL----MTGDVTLSPNASCLVMTTEIL 169
+ + +G+ +TGD+ LS + ++ T++L
Sbjct: 549 NYFSKRLEPLGIVVKELTGDMQLSKSE---ILRTQML 582
>UNIPROTKB|F1NTD6 [details] [associations]
symbol:ascc3 "Activating signal cointegrator 1 complex
subunit 3" species:9031 "Gallus gallus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006307 "DNA dealkylation involved in
DNA repair" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:10973 KO:K01529 GO:GO:0043140
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
EMBL:AADN02002229 EMBL:AADN02002230 EMBL:AADN02002231
EMBL:AADN02002232 EMBL:AADN02002233 EMBL:AADN02002234
IPI:IPI00590520 RefSeq:XP_419816.1 UniGene:Gga.31679
ProteinModelPortal:F1NTD6 PRIDE:F1NTD6 GeneID:421790
KEGG:gga:421790 Uniprot:F1NTD6
Length = 2211
Score = 134 (52.2 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 37/127 (29%), Positives = 62/127 (48%)
Query: 330 QPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNE-EDRNLPAIELML 388
+PV++F SRR+ ++ + + K ++ + D + D NL +L L
Sbjct: 1565 KPVLIFVSSRRQTRLTSLDLIAFLATEDDPKQWLKMDEREMNDIIGTVRDSNL---KLTL 1621
Query: 389 PLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448
GI +HH+GL ++ VE LF ++ L AT T A G+N PA V+ + +D
Sbjct: 1622 AF---GIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIVKGTEYYD 1678
Query: 449 GDSHRYI 455
G + RY+
Sbjct: 1679 GKTRRYV 1685
Score = 129 (50.5 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 48/147 (32%), Positives = 74/147 (50%)
Query: 73 YSF-ELDPFQRVSVACLERNE-SVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPL 128
Y F +P Q L + +VL+ A T +GKT AE AI F + +Y +PL
Sbjct: 1331 YKFTHFNPIQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPL 1390
Query: 129 KALSNQKYRE----LHQEF-KDVGLMTGDVTLSPNASC---LVMTT-EILRGML--YRGS 177
KAL ++ + + ++ K V +TGDVT A L++TT E G+ ++
Sbjct: 1391 KALVRERIEDWKVRIEEKLGKKVVELTGDVTPDMRAIAQADLIVTTPEKWDGVSRSWQNR 1450
Query: 178 EVLKEVAWVIFDEIHYMKDRERGVVWE 204
+++V+ +I DEIH + D ERG V E
Sbjct: 1451 SYVQKVSILIIDEIHLLGD-ERGPVLE 1476
Score = 115 (45.5 bits), Expect = 7.1e-07, Sum P(3) = 7.1e-07
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 390 LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDG 449
L G ++HH+G+L + LVE LF G +K L T T A G+N+PA VV + +
Sbjct: 783 LFPDGFSIHHAGMLRQDRSLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAA 842
Query: 450 DSHRYIGSG 458
++ G
Sbjct: 843 KRGSFVDLG 851
Score = 106 (42.4 bits), Expect = 7.1e-07, Sum P(3) = 7.1e-07
Identities = 53/232 (22%), Positives = 101/232 (43%)
Query: 91 NESVLVSAHTSAGKTAVAEYAIAMAFR----------DKQRVIYTSPLKALSNQKYRELH 140
NE++L+ A T AGKT +A + R D+ +++Y +P+KAL+ +
Sbjct: 501 NENMLICAPTGAGKTNIAMLTVLHEIRQHVQHGVIKKDEFKIVYVAPMKALAAEMTNYFS 560
Query: 141 QEFKDVGL----MTGDVTLSPNA---SCLVMTTEILRGMLYR---GSEVLKE-VAWVIFD 189
+ + +G+ +TGD+ LS + +++TT ++ R G L + V +I D
Sbjct: 561 KRLEPLGITVKELTGDMQLSKGEILRTQMLVTTPEKWDVVTRKSVGDVALSQLVKLLILD 620
Query: 190 EIHYMKDRERGVVWEESIIFLPPAIK----MVFLSATMSNATQFAEWICHLHKQP-CHVV 244
E+H + + +RG V E + ++ M+ + + + + LH P +
Sbjct: 621 EVHLLHE-DRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLF 679
Query: 245 YTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRR 296
Y D R P+ P+G + + + K Q + LKQ + G +
Sbjct: 680 YFDSRFRPV-----PLGQTFIGIKTTNKVQQLNHMDEVCYENVLKQIMAGHQ 726
Score = 99 (39.9 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 39/131 (29%), Positives = 67/131 (51%)
Query: 144 KDVGLMTGDVTLSPNASC---LVMTT-EILRGML--YRGSEVLKEVAWVIFDEIHYMKDR 197
K V +TGDVT A L++TT E G+ ++ +++V+ +I DEIH + D
Sbjct: 1411 KKVVELTGDVTPDMRAIAQADLIVTTPEKWDGVSRSWQNRSYVQKVSILIIDEIHLLGD- 1469
Query: 198 ERGVVWEESII---FLPP----AIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP 250
ERG V E + F+ +++V LS ++NA A+W+ ++++ RP
Sbjct: 1470 ERGPVLEVIVSRTNFISSHTEKPVRVVGLSTALANARDLADWL-NINQMGLFNFRPSVRP 1528
Query: 251 TPLQHYV--FP 259
PL+ ++ FP
Sbjct: 1529 VPLEVHIQGFP 1539
Score = 41 (19.5 bits), Expect = 7.1e-07, Sum P(3) = 7.1e-07
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 623 PLISTLSKIRLSVPPD 638
P+ T+ ++RL++ PD
Sbjct: 1199 PITRTVLRVRLNITPD 1214
>UNIPROTKB|Q8N3C0 [details] [associations]
symbol:ASCC3 "Activating signal cointegrator 1 complex
subunit 3" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006307 "DNA dealkylation
involved in DNA repair" evidence=IDA] [GO:0032508 "DNA duplex
unwinding" evidence=IDA] [GO:0008283 "cell proliferation"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005622 "intracellular" evidence=IDA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0006307
GO:GO:0008283 EMBL:CH471051 GO:GO:0006351 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:10973
KO:K01529 OMA:FPGKHYC GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AL834463 EMBL:AK315197
EMBL:AL591585 EMBL:AL121965 EMBL:AL133338 EMBL:AL356122 EMBL:Z86062
EMBL:BC050681 EMBL:BC125211 EMBL:BC125212 EMBL:BC026066
EMBL:AY013288 EMBL:AJ223948 IPI:IPI00430472 RefSeq:NP_006819.2
RefSeq:NP_071374.1 UniGene:Hs.486031 ProteinModelPortal:Q8N3C0
SMR:Q8N3C0 IntAct:Q8N3C0 MINT:MINT-1183138 STRING:Q8N3C0
PhosphoSite:Q8N3C0 DMDM:158518649 PaxDb:Q8N3C0 PRIDE:Q8N3C0
DNASU:10973 Ensembl:ENST00000369143 Ensembl:ENST00000369162
Ensembl:ENST00000522650 GeneID:10973 KEGG:hsa:10973 UCSC:uc003pqk.3
GeneCards:GC06M100956 H-InvDB:HIX0021958 HGNC:HGNC:18697
HPA:HPA031608 HPA:HPA031609 HPA:HPA031610 MIM:614217
neXtProt:NX_Q8N3C0 PharmGKB:PA134890913 eggNOG:COG1204
HOGENOM:HOG000152625 HOVERGEN:HBG051896 InParanoid:Q8N3C0
PhylomeDB:Q8N3C0 ChiTaRS:ASCC3 GenomeRNAi:10973 NextBio:41694
ArrayExpress:Q8N3C0 Bgee:Q8N3C0 CleanEx:HS_ASCC3
Genevestigator:Q8N3C0 GermOnline:ENSG00000112249 Uniprot:Q8N3C0
Length = 2202
Score = 140 (54.3 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 40/129 (31%), Positives = 65/129 (50%)
Query: 330 QPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTV---EQVFQNAVDCLNEEDRNLPAIEL 386
+PV++F SRR+ A+ + ++ K + E+ +N + + D NL +L
Sbjct: 1556 KPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEREMENIIATVR--DSNL---KL 1610
Query: 387 MLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKK 446
L GI +HH+GL ++ VE LF V+ L AT T A G+N PA V+ +
Sbjct: 1611 TLAF---GIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEY 1667
Query: 447 WDGDSHRYI 455
+DG + RY+
Sbjct: 1668 YDGKTRRYV 1676
Score = 122 (48.0 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 46/147 (31%), Positives = 72/147 (48%)
Query: 73 YSFE-LDPFQRVSVACLERNE-SVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPL 128
Y+F +P Q L + +VL+ A T +GKT AE AI F + +Y +PL
Sbjct: 1322 YNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPL 1381
Query: 129 KALSNQKYRE----LHQEF-KDVGLMTGDVTLS----PNASCLVMTTEILRGML--YRGS 177
KAL ++ + + ++ K V +TGDVT A +V T E G+ ++
Sbjct: 1382 KALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNR 1441
Query: 178 EVLKEVAWVIFDEIHYMKDRERGVVWE 204
+++V +I DEIH + + ERG V E
Sbjct: 1442 NYVQQVTILIIDEIHLLGE-ERGPVLE 1467
Score = 114 (45.2 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 390 LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDG 449
L G ++HH+G+L + LVE LF G +K L T T A G+N+PA V+ + +
Sbjct: 774 LFPDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAA 833
Query: 450 DSHRYIGSG 458
++ G
Sbjct: 834 KRGSFVDLG 842
Score = 92 (37.4 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 37/131 (28%), Positives = 63/131 (48%)
Query: 144 KDVGLMTGDVTLS----PNASCLVMTTEILRGML--YRGSEVLKEVAWVIFDEIHYMKDR 197
K V +TGDVT A +V T E G+ ++ +++V +I DEIH + +
Sbjct: 1402 KKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVQQVTILIIDEIHLLGE- 1460
Query: 198 ERGVVWEESII---FLPP----AIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP 250
ERG V E + F+ +++V LS ++NA A+W+ ++ + RP
Sbjct: 1461 ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWL-NIKQMGLFNFRPSVRP 1519
Query: 251 TPLQHYV--FP 259
PL+ ++ FP
Sbjct: 1520 VPLEVHIQGFP 1530
Score = 79 (32.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 25/93 (26%), Positives = 49/93 (52%)
Query: 91 NESVLVSAHTSAGKTAVAEYAIAMAFRD--KQ--------RVIYTSPLKALSNQKYRELH 140
NE++L+ A T AGKT +A + R +Q +++Y +P+KAL+ +
Sbjct: 492 NENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTDYFS 551
Query: 141 QEFKDVGL----MTGDVTLSPNASCLVMTTEIL 169
+ + +G+ +TGD+ LS + ++ T++L
Sbjct: 552 RRLEPLGIIVKELTGDMQLSKSE---ILRTQML 581
>UNIPROTKB|F6Y2F0 [details] [associations]
symbol:ASCC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:10973 GeneTree:ENSGT00700000104562 KO:K01529 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 GO:GO:0008026
Ensembl:ENSCAFT00000005717 EMBL:AAEX03008562 RefSeq:XP_854167.1
ProteinModelPortal:F6Y2F0 GeneID:475008 KEGG:cfa:475008 OMA:XAVYIAP
Uniprot:F6Y2F0
Length = 2202
Score = 144 (55.7 bits), Expect = 5.3e-12, Sum P(3) = 5.3e-12
Identities = 41/129 (31%), Positives = 65/129 (50%)
Query: 330 QPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTV---EQVFQNAVDCLNEEDRNLPAIEL 386
+PV++F SRR+ A+ + ++ K + E+ +N + L D NL +L
Sbjct: 1556 KPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEREMENIIGTLR--DSNL---KL 1610
Query: 387 MLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKK 446
L GI +HH+GL ++ VE LF V+ L AT T A G+N PA V+ +
Sbjct: 1611 TLAF---GIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEY 1667
Query: 447 WDGDSHRYI 455
+DG + RY+
Sbjct: 1668 YDGKTRRYV 1676
Score = 126 (49.4 bits), Expect = 5.3e-12, Sum P(3) = 5.3e-12
Identities = 47/147 (31%), Positives = 72/147 (48%)
Query: 73 YSFE-LDPFQRVSVACLERNE-SVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPL 128
Y+F +P Q L + +VL+ A T +GKT AE AI F + +Y +PL
Sbjct: 1322 YNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPL 1381
Query: 129 KALSNQKYRE----LHQEF-KDVGLMTGDVTLS----PNASCLVMTTEILRGML--YRGS 177
KAL ++ + + ++ K V +TGDVT A +V T E G+ ++
Sbjct: 1382 KALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNR 1441
Query: 178 EVLKEVAWVIFDEIHYMKDRERGVVWE 204
+K+V +I DEIH + + ERG V E
Sbjct: 1442 NYVKQVTILIIDEIHLLGE-ERGPVLE 1467
Score = 114 (45.2 bits), Expect = 6.8e-05, Sum P(3) = 6.8e-05
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 390 LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDG 449
L G ++HH+G+L + LVE LF G +K L T T A G+N+PA V+ + +
Sbjct: 774 LFPDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAA 833
Query: 450 DSHRYIGSG 458
++ G
Sbjct: 834 KRGSFVDLG 842
Score = 105 (42.0 bits), Expect = 7.0e-10, Sum P(3) = 7.0e-10
Identities = 39/131 (29%), Positives = 64/131 (48%)
Query: 144 KDVGLMTGDVTLS----PNASCLVMTTEILRGML--YRGSEVLKEVAWVIFDEIHYMKDR 197
K V +TGDVT A +V T E G+ ++ +K+V +I DEIH + +
Sbjct: 1402 KKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGE- 1460
Query: 198 ERGVVWEESII---FLPP----AIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP 250
ERG V E + F+ +++V LS ++NA A+W+ ++H+ RP
Sbjct: 1461 ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWL-NIHQMGLFNFRPSVRP 1519
Query: 251 TPLQHYV--FP 259
PL+ ++ FP
Sbjct: 1520 VPLEVHIQGFP 1530
Score = 86 (35.3 bits), Expect = 5.7e-08, Sum P(3) = 5.7e-08
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 91 NESVLVSAHTSAGKTAVAEYAIAMAFRD--KQ--------RVIYTSPLKALSNQKYRELH 140
NE++L+ A T AGKT +A + R +Q +++Y +P+KAL+ +
Sbjct: 492 NENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTNYFS 551
Query: 141 QEFKDVGL----MTGDVTLSPNASCLVMTTEIL 169
+ + +G+ +TGD+ LS N ++ T++L
Sbjct: 552 KRLEPLGIVVKELTGDMQLSKNE---ILRTQML 581
Score = 42 (19.8 bits), Expect = 5.3e-12, Sum P(3) = 5.3e-12
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 504 HVIKNSFHQFQYEKALPDIGKKVS-KLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLM 562
H N F EK+L ++ ++ E+ S++ +A Y+ LK ++ K+ +
Sbjct: 1777 HDSVNKFLSSLVEKSLVELEHSYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFKERL 1836
Query: 563 SEITRPERVLYYL 575
E +L L
Sbjct: 1837 KPECGTEELLSIL 1849
>WB|WBGene00012896 [details] [associations]
symbol:snrp-200 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018991
"oviposition" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0018991 GO:GO:0016477 GO:GO:0008406
GO:GO:0002119 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 GO:GO:0042127 GO:GO:0007281 GO:GO:0040020
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272 KO:K12854
OMA:KWDVLSR GO:GO:0008026 EMBL:AL110485 RefSeq:NP_496710.1
ProteinModelPortal:Q9U2G0 SMR:Q9U2G0 IntAct:Q9U2G0
MINT:MINT-1062451 STRING:Q9U2G0 PaxDb:Q9U2G0
EnsemblMetazoa:Y46G5A.4 GeneID:174901 KEGG:cel:CELE_Y46G5A.4
UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4 InParanoid:Q9U2G0
NextBio:885976 Uniprot:Q9U2G0
Length = 2145
Score = 151 (58.2 bits), Expect = 5.8e-12, Sum P(3) = 5.8e-12
Identities = 47/147 (31%), Positives = 78/147 (53%)
Query: 324 IMER--KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQN---AVDCLNEED 378
IME K Q V+VF SR+E + A ++ EKDT+ + + + L E
Sbjct: 705 IMEHAGKSQ-VLVFVHSRKETAKTAKAIRDACL----EKDTLSAFMREGSASTEILRTEA 759
Query: 379 RNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKT 438
++L LL G A+HH+G+ V + LVE LF + ++ LF+T T A G+N+PA T
Sbjct: 760 EQAKNLDLK-DLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHT 818
Query: 439 VVFTAVKKWDGDSHRY--IGSGEYIQM 463
V+ + ++ + R+ +G+ + +QM
Sbjct: 819 VIIKGTQIYNPEKGRWTELGALDIMQM 845
Score = 122 (48.0 bits), Expect = 5.8e-12, Sum P(3) = 5.8e-12
Identities = 62/230 (26%), Positives = 101/230 (43%)
Query: 60 FANPVYNGEMAKTYSFELDPFQ-RVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR- 117
+A P ++G Y L+ Q R+ + L E +L+ A T AGKT VA +
Sbjct: 464 WAQPAFDG-----YK-SLNRIQSRLCDSALRSKEHLLLCAPTGAGKTNVALLTMLQEIGN 517
Query: 118 ----------DKQRVIYTSPLKALSNQKYRELHQEFKDVGL----MTGDVTLSPN----A 159
D+ +++Y +P+K+L + + G+ MTGD +S
Sbjct: 518 HLAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRLAPFGITVGEMTGDAQMSKEQFMAT 577
Query: 160 SCLVMTTEILRGMLYRGSEVL--KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAI--- 214
+V T E + +G E + V +I DEIH + D +RG V E ++ +
Sbjct: 578 QVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDEIHLLHD-DRGPVLESIVVRTIRQMEQN 636
Query: 215 ----KMVFLSATMSNATQFAEWICHLHKQPCHVVYTD--FRPTPL-QHYV 257
++V LSAT+ N A + L +P H+ + D +RP PL Q Y+
Sbjct: 637 HDECRLVGLSATLPNYQDVATF---LRVKPEHLHFFDNSYRPVPLEQQYI 683
Score = 38 (18.4 bits), Expect = 5.8e-12, Sum P(3) = 5.8e-12
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 623 PLISTLSKIRLSVPPDLR 640
P+ T +I L++ PD +
Sbjct: 1185 PITRTTMRIELTITPDFK 1202
>UNIPROTKB|Q9U2G0 [details] [associations]
symbol:Y46G5A.4 "Putative U5 small nuclear
ribonucleoprotein 200 kDa helicase" species:6239 "Caenorhabditis
elegans" [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0018991 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0008380 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0042127 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
EMBL:AL110485 RefSeq:NP_496710.1 ProteinModelPortal:Q9U2G0
SMR:Q9U2G0 IntAct:Q9U2G0 MINT:MINT-1062451 STRING:Q9U2G0
PaxDb:Q9U2G0 EnsemblMetazoa:Y46G5A.4 GeneID:174901
KEGG:cel:CELE_Y46G5A.4 UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4
InParanoid:Q9U2G0 NextBio:885976 Uniprot:Q9U2G0
Length = 2145
Score = 151 (58.2 bits), Expect = 5.8e-12, Sum P(3) = 5.8e-12
Identities = 47/147 (31%), Positives = 78/147 (53%)
Query: 324 IMER--KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQN---AVDCLNEED 378
IME K Q V+VF SR+E + A ++ EKDT+ + + + L E
Sbjct: 705 IMEHAGKSQ-VLVFVHSRKETAKTAKAIRDACL----EKDTLSAFMREGSASTEILRTEA 759
Query: 379 RNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKT 438
++L LL G A+HH+G+ V + LVE LF + ++ LF+T T A G+N+PA T
Sbjct: 760 EQAKNLDLK-DLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHT 818
Query: 439 VVFTAVKKWDGDSHRY--IGSGEYIQM 463
V+ + ++ + R+ +G+ + +QM
Sbjct: 819 VIIKGTQIYNPEKGRWTELGALDIMQM 845
Score = 122 (48.0 bits), Expect = 5.8e-12, Sum P(3) = 5.8e-12
Identities = 62/230 (26%), Positives = 101/230 (43%)
Query: 60 FANPVYNGEMAKTYSFELDPFQ-RVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR- 117
+A P ++G Y L+ Q R+ + L E +L+ A T AGKT VA +
Sbjct: 464 WAQPAFDG-----YK-SLNRIQSRLCDSALRSKEHLLLCAPTGAGKTNVALLTMLQEIGN 517
Query: 118 ----------DKQRVIYTSPLKALSNQKYRELHQEFKDVGL----MTGDVTLSPN----A 159
D+ +++Y +P+K+L + + G+ MTGD +S
Sbjct: 518 HLAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRLAPFGITVGEMTGDAQMSKEQFMAT 577
Query: 160 SCLVMTTEILRGMLYRGSEVL--KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAI--- 214
+V T E + +G E + V +I DEIH + D +RG V E ++ +
Sbjct: 578 QVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDEIHLLHD-DRGPVLESIVVRTIRQMEQN 636
Query: 215 ----KMVFLSATMSNATQFAEWICHLHKQPCHVVYTD--FRPTPL-QHYV 257
++V LSAT+ N A + L +P H+ + D +RP PL Q Y+
Sbjct: 637 HDECRLVGLSATLPNYQDVATF---LRVKPEHLHFFDNSYRPVPLEQQYI 683
Score = 38 (18.4 bits), Expect = 5.8e-12, Sum P(3) = 5.8e-12
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 623 PLISTLSKIRLSVPPDLR 640
P+ T +I L++ PD +
Sbjct: 1185 PITRTTMRIELTITPDFK 1202
>CGD|CAL0003134 [details] [associations]
symbol:orf19.3980 species:5476 "Candida albicans" [GO:0042788
"polysomal ribosome" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0002181 "cytoplasmic translation" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 CGD:CAL0003134 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0008026 EMBL:AACQ01000012 EMBL:AACQ01000011
RefSeq:XP_721889.1 RefSeq:XP_722050.1 ProteinModelPortal:Q5AK41
STRING:Q5AK41 GeneID:3636313 GeneID:3636419 KEGG:cal:CaO19.11463
KEGG:cal:CaO19.3980 Uniprot:Q5AK41
Length = 1929
Score = 133 (51.9 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 47/158 (29%), Positives = 82/158 (51%)
Query: 64 VYNGEMAKTYS--FE-LDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMAFRD- 118
++N ++ + YS F+ +P Q + L N SV V + T +GKT VAE AI AF +
Sbjct: 1098 LHNPDVEQIYSSKFKYFNPMQTMVFHSLYNTNSSVFVGSPTGSGKTVVAELAIWHAFNEF 1157
Query: 119 -KQRVIYTSPLKALSNQKYRELHQEF-KDVGL----MTGDV--TLSP--NASCLVMTTEI 168
+V+Y +P+KAL ++ + + K+ +TGD T+ A ++ T E
Sbjct: 1158 PSSKVVYIAPMKALVRERVDDWRERICKNTSHRLVELTGDSLPTIQEVKEADIIITTPEK 1217
Query: 169 LRGML--YRGSEVLKEVAWVIFDEIHYMKDRERGVVWE 204
G+ ++ + +++V+ VI DEIH + +RG + E
Sbjct: 1218 FDGISRNWQTRKFVQQVSLVIMDEIHLLAS-DRGPILE 1254
Score = 132 (51.5 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 40/161 (24%), Positives = 78/161 (48%)
Query: 330 QPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLP 389
+PV++F SRR+ A+ + L E + + + + D L + N+ L L
Sbjct: 1343 KPVLIFVASRRQTRLTALDLIHL---CGMESNP-RRFLKISDDELQDILENVKDDTLRLS 1398
Query: 390 LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDG 449
L + G+ +HH+GL+ +++ LF++G ++ L AT T A G+N+PA V+ + +D
Sbjct: 1399 L-QFGMGLHHAGLVESDRQISHKLFEQGKIQILIATSTLAWGVNLPAHLVIIKGTQFFDA 1457
Query: 450 --DSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEM 488
+++R + + +QM I I+ E ++
Sbjct: 1458 KIEAYRDMDLTDILQMMGRAGRPAYDTSGIAIVYTKESKKV 1498
Score = 127 (49.8 bits), Expect = 5.2e-08, Sum P(5) = 5.2e-08
Identities = 34/134 (25%), Positives = 62/134 (46%)
Query: 332 VIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLL 391
V+VF SR++ A + ++ E + ++ + E N + + L
Sbjct: 506 VMVFVHSRKDTVNTARTFIRMAVE-YGESEIFNCSEADSYEKYKREASNKNRSKELKELF 564
Query: 392 KRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDS 451
G VHH+G+L + L E +F+ G +K L T T A G+N+PA V+ + +D +
Sbjct: 565 VHGFGVHHAGMLRSDRNLTEKMFESGAIKVLCCTATLAWGVNLPAAVVIVKGTQVYDSKA 624
Query: 452 HRYI--GSGEYIQM 463
++ G + IQ+
Sbjct: 625 GGFVDLGISDVIQI 638
Score = 93 (37.8 bits), Expect = 5.2e-08, Sum P(5) = 5.2e-08
Identities = 44/159 (27%), Positives = 77/159 (48%)
Query: 149 MTGDVTLSP----NASCLVMTTE---ILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGV 201
+TGD+ L+ N +V T E ++ SE++ +V +I DE+H + + +RG
Sbjct: 351 LTGDMQLTRQEIINTQIIVTTPEKWDVVTRKSTGDSELVAKVKLLIIDEVHLLHE-DRGS 409
Query: 202 VWE-------ESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTD--FRPTP 252
V E + I++V LSAT+ N A+++ +++ + Y D FRP P
Sbjct: 410 VIETLVARTLRQVESTQSMIRVVGLSATLPNYMDVADFL-GVNRS-VGMFYFDQSFRPVP 467
Query: 253 LQHYVFPVGG-SGLYLVVDEKEQFREDNFVKLQDTFLKQ 290
LQ + V G +G L +E + ++ KL D ++ Q
Sbjct: 468 LQQQILGVRGKAGSKLA---RENIDKVSYEKLAD-YINQ 502
Score = 92 (37.4 bits), Expect = 6.5e-08, Sum P(5) = 6.5e-08
Identities = 28/98 (28%), Positives = 54/98 (55%)
Query: 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGL----MTGDVTLSP----NASCLVMTTE-- 167
D+ +++Y +PLKAL+ + + ++ K +G+ +TGD+ L+ N +V T E
Sbjct: 316 DEFKIVYVAPLKALAAEIVEKYSKKLKWLGINVRELTGDMQLTRQEIINTQIIVTTPEKW 375
Query: 168 -ILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWE 204
++ SE++ +V +I DE+H + + +RG V E
Sbjct: 376 DVVTRKSTGDSELVAKVKLLIIDEVHLLHE-DRGSVIE 412
Score = 77 (32.2 bits), Expect = 8.5e-07, Sum P(4) = 8.5e-07
Identities = 34/126 (26%), Positives = 58/126 (46%)
Query: 149 MTGDV--TLSP--NASCLVMTTEILRGML--YRGSEVLKEVAWVIFDEIHYMKDRERGVV 202
+TGD T+ A ++ T E G+ ++ + +++V+ VI DEIH + +RG +
Sbjct: 1194 LTGDSLPTIQEVKEADIIITTPEKFDGISRNWQTRKFVQQVSLVIMDEIHLLAS-DRGPI 1252
Query: 203 WEESIIFL-------PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQH 255
E + + I+++ +S +SNA A W+ K RP PLQ
Sbjct: 1253 LEMIVSRMNYISSQTKKPIRLLGMSTAVSNAFDMAGWLGV--KNGLFNFPQSVRPVPLQM 1310
Query: 256 YV--FP 259
Y+ FP
Sbjct: 1311 YIDGFP 1316
Score = 53 (23.7 bits), Expect = 5.2e-08, Sum P(5) = 5.2e-08
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 91 NESVLVSAHTSAGKTAVA 108
NE++LV A T AGKT VA
Sbjct: 270 NENMLVCAPTGAGKTDVA 287
Score = 44 (20.5 bits), Expect = 5.2e-08, Sum P(5) = 5.2e-08
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 667 NPVKDMKIEDPEVVDLVNQIEE 688
NP + +KI D E+ D++ +++
Sbjct: 1371 NPRRFLKISDDELQDILENVKD 1392
Score = 42 (19.8 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 761 KGRAACLIDTGDELLVTELMFNGTFNDLD 789
KG AC +D D+L EL + LD
Sbjct: 1891 KGIVACDLDIPDDLFGKELYLECVNDGLD 1919
>WB|WBGene00021905 [details] [associations]
symbol:helq-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IGI] [GO:0051117 "ATPase
binding" evidence=IPI] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 GO:GO:0000712 GO:GO:0017116
OMA:SRPLENC EMBL:FO080183 RefSeq:NP_001022911.1
ProteinModelPortal:H2KY86 SMR:H2KY86 EnsemblMetazoa:Y55B1AL.3a
GeneID:175210 KEGG:cel:CELE_Y55B1AL.3 CTD:175210
WormBase:Y55B1AL.3a Uniprot:H2KY86
Length = 923
Score = 156 (60.0 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 41/164 (25%), Positives = 78/164 (47%)
Query: 333 IVFSFSRRECEQHAMSMSK-LDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLL 391
++F +++ CE A+ ++K L + ++ K F + N+++R + A+ + +
Sbjct: 407 VIFCPNKKNCENVAVLIAKTLPAHIRQAKRAESDAFLQSYLSDNDDER-MDAV--LKQCI 463
Query: 392 KRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDS 451
G+A HHSGL ++ VE F EGL+ + AT T A G+N+P + V+ A
Sbjct: 464 LSGVAYHHSGLTQDERKCVEAAFMEGLIYVVCATSTLAAGVNLPVRRVIIKAPMV----G 519
Query: 452 HRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTLKDMV 495
+G +Y+QM+ CI ++ E ++M+
Sbjct: 520 RERLGKAQYLQMAGRAGRAGFDTKGDCITIIKAGEEERWFREML 563
Score = 93 (37.8 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 49/184 (26%), Positives = 79/184 (42%)
Query: 92 ESVLVSAHTSAGKTAVAEYAIAM-AFRDKQRVIYTSPLKALSNQKYRELHQEFKDV-GLM 149
E+ ++S T AGKT +AE + A K+ I P A+ +K L F+D G+
Sbjct: 185 ENCILSLPTGAGKTLIAEVLMLREAIVRKRNAILVLPYVAIVQEKISAL-APFEDAFGIN 243
Query: 150 TGDVTLS----P------NASCLVMTTE----ILRGMLYRGSEVLKEVAWVIFDEIHYMK 195
+ + P S V T E ++ ++ +G L V V+ DE+H +
Sbjct: 244 IEEYASNKGRFPPIKRRKRVSVYVATIEKANMLINSLITQGQ--LDRVGMVVVDELHMIG 301
Query: 196 DRERGVVWEESII-FLPPAI-KMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPL 253
D RG + E+ + FL ++V +SAT+ N + V T+FRP L
Sbjct: 302 DGGRGAILEQLLAKFLYKGTGQIVGMSATLPNIDDLKFAL------RAFVYSTNFRPVEL 355
Query: 254 QHYV 257
+V
Sbjct: 356 TEFV 359
>UNIPROTKB|E1BNG3 [details] [associations]
symbol:ascc3 "Activating signal cointegrator 1 complex
subunit 3" species:9913 "Bos taurus" [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:DAAA02026160 EMBL:DAAA02026161
EMBL:DAAA02026162 EMBL:DAAA02026163 EMBL:DAAA02026164
EMBL:DAAA02026165 EMBL:DAAA02026166 EMBL:DAAA02026167
EMBL:DAAA02026168 EMBL:DAAA02026169 EMBL:DAAA02026170
EMBL:DAAA02026171 EMBL:DAAA02026172 EMBL:DAAA02026173
EMBL:DAAA02026174 EMBL:DAAA02026175 EMBL:DAAA02026176
EMBL:DAAA02026177 EMBL:DAAA02026178 EMBL:DAAA02026179
EMBL:DAAA02026180 EMBL:DAAA02026181 EMBL:DAAA02026182
EMBL:DAAA02026183 EMBL:DAAA02026184 EMBL:DAAA02026185
EMBL:DAAA02026186 EMBL:DAAA02026187 EMBL:DAAA02026188
EMBL:DAAA02026189 EMBL:DAAA02026190 EMBL:DAAA02026191
EMBL:DAAA02026192 EMBL:DAAA02026193 EMBL:DAAA02026194
EMBL:DAAA02026195 EMBL:DAAA02026196 EMBL:DAAA02026197
EMBL:DAAA02026198 EMBL:DAAA02026199 IPI:IPI00689177
RefSeq:NP_001193047.1 UniGene:Bt.26262 PRIDE:E1BNG3
Ensembl:ENSBTAT00000027294 GeneID:538416 KEGG:bta:538416 CTD:10973
GeneTree:ENSGT00700000104562 KO:K01529 OMA:FPGKHYC NextBio:20877349
GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 Uniprot:E1BNG3
Length = 2201
Score = 141 (54.7 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 39/129 (30%), Positives = 65/129 (50%)
Query: 330 QPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTV---EQVFQNAVDCLNEEDRNLPAIEL 386
+PV++F SRR+ A+ + ++ K + E+ +N + + D NL +L
Sbjct: 1556 KPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEREMENIIGTIR--DSNL---KL 1610
Query: 387 MLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKK 446
L GI +HH+GL ++ VE LF ++ L AT T A G+N PA V+ +
Sbjct: 1611 TLAF---GIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIIKGTEY 1667
Query: 447 WDGDSHRYI 455
+DG + RY+
Sbjct: 1668 YDGKTRRYV 1676
Score = 126 (49.4 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 47/147 (31%), Positives = 72/147 (48%)
Query: 73 YSFE-LDPFQRVSVACLERNE-SVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPL 128
Y+F +P Q L + +VL+ A T +GKT AE AI F + +Y +PL
Sbjct: 1322 YNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPL 1381
Query: 129 KALSNQKYRE----LHQEF-KDVGLMTGDVTLS----PNASCLVMTTEILRGML--YRGS 177
KAL ++ + + ++ K V +TGDVT A +V T E G+ ++
Sbjct: 1382 KALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNR 1441
Query: 178 EVLKEVAWVIFDEIHYMKDRERGVVWE 204
+K+V +I DEIH + + ERG V E
Sbjct: 1442 NYVKQVTILIIDEIHLLGE-ERGPVLE 1467
Score = 115 (45.5 bits), Expect = 6.8e-05, Sum P(3) = 6.8e-05
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 390 LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDG 449
L G ++HH+G+L + LVE LF G +K L T T A G+N+PA V+ + +
Sbjct: 774 LFPDGFSIHHAGMLRQDRNLVESLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAA 833
Query: 450 DSHRYIGSG 458
++ G
Sbjct: 834 KRGSFVDLG 842
Score = 97 (39.2 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 38/131 (29%), Positives = 63/131 (48%)
Query: 144 KDVGLMTGDVTLS----PNASCLVMTTEILRGML--YRGSEVLKEVAWVIFDEIHYMKDR 197
K V +TGDVT A +V T E G+ ++ +K+V +I DEIH + +
Sbjct: 1402 KKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGE- 1460
Query: 198 ERGVVWEESII---FLPP----AIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP 250
ERG V E + F+ +++V LS ++NA A+W+ ++ + RP
Sbjct: 1461 ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWL-NIRQMGLFNFRPSVRP 1519
Query: 251 TPLQHYV--FP 259
PL+ ++ FP
Sbjct: 1520 VPLEVHIQGFP 1530
Score = 86 (35.3 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 91 NESVLVSAHTSAGKTAVAEYAIAMAFRD--KQ--------RVIYTSPLKALSNQKYRELH 140
NE++L+ A T AGKT +A + R +Q +++Y +P+KAL+ +
Sbjct: 492 NENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTNYFS 551
Query: 141 QEFKDVGL----MTGDVTLSPNASCLVMTTEIL 169
+ + +G+ +TGD+ LS N ++ T++L
Sbjct: 552 KRLEPLGIVVKELTGDMQLSKNE---ILRTQML 581
Score = 41 (19.5 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 504 HVIKNSFHQFQYEKALPDIGKKVS-KLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLM 562
H N F EK+L ++ ++ E+ S++ +A Y+ LK ++ K+ +
Sbjct: 1777 HDSVNKFLSNLVEKSLVELEHSYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFKERL 1836
Query: 563 SEITRPERVLYYL 575
E +L L
Sbjct: 1837 KPECGTEELLSIL 1849
Score = 38 (18.4 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 623 PLISTLSKIRLSVPPD 638
P+ T+ ++ LS+ PD
Sbjct: 1190 PITRTVLRVTLSISPD 1205
>FB|FBgn0002899 [details] [associations]
symbol:mus301 "mutagen-sensitive 301" species:7227
"Drosophila melanogaster" [GO:0007294 "germarium-derived oocyte
fate determination" evidence=IGI;IMP] [GO:0008298 "intracellular
mRNA localization" evidence=IMP;TAS] [GO:0048477 "oogenesis"
evidence=IGI;TAS] [GO:0009949 "polarity specification of
anterior/posterior axis" evidence=IMP] [GO:0030717 "karyosome
formation" evidence=IMP] [GO:0009951 "polarity specification of
dorsal/ventral axis" evidence=IMP] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5 snRNP"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0009994 "oocyte differentiation" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016321 "female meiosis chromosome segregation"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009949 GO:GO:0007294 EMBL:AE014296 GO:GO:0006417
GO:GO:0006200 GO:GO:0003676 GO:GO:0004386 GO:GO:0008298
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1204
GeneTree:ENSGT00640000091272 GO:GO:0030717 GO:GO:0016321
GO:GO:0008026 OMA:SRPLENC GO:GO:0009951 EMBL:BT011090
RefSeq:NP_648178.1 UniGene:Dm.15493 SMR:Q9VSE2 IntAct:Q9VSE2
STRING:Q9VSE2 EnsemblMetazoa:FBtr0076689 GeneID:38905
KEGG:dme:Dmel_CG7972 UCSC:CG7972-RA CTD:38905 FlyBase:FBgn0002899
InParanoid:Q9VSE2 OrthoDB:EOG4MKKXB GenomeRNAi:38905 NextBio:810944
Uniprot:Q9VSE2
Length = 1051
Score = 129 (50.5 bits), Expect = 1.8e-11, Sum P(3) = 1.8e-11
Identities = 35/112 (31%), Positives = 58/112 (51%)
Query: 333 IVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLP-LL 391
+VF SR+ CE A+ +S++ + K E +D ++ D+ + +L L
Sbjct: 512 LVFCPSRKNCENVALLLSRI---VPKHK-FFEHRRSEKLDLMDALDKMCGILSPVLAKTL 567
Query: 392 KRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA 443
GIA HHSGL ++ +E ++ G+V + T T A G+N+PAK V+ A
Sbjct: 568 PYGIAYHHSGLTTDERKYIETAYRFGVVTVICCTSTLAAGVNLPAKRVIIRA 619
Score = 109 (43.4 bits), Expect = 1.8e-11, Sum P(3) = 1.8e-11
Identities = 51/217 (23%), Positives = 100/217 (46%)
Query: 83 VSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQR-VIYTSPLKALSNQKYRELHQ 141
+++ + + ++++ + TS GKT VAE + ++R V++ P ++ +K +
Sbjct: 272 LNLPAIRQRKNLIYALPTSGGKTLVAEILMLRELLCRERNVLFILPYVSIVQEKVSAMSP 331
Query: 142 EFKDVGLMTGDVTLSPNASC---------LVMTTEILRGMLYRGS--EVLK--EVAWVIF 188
D+ + + T C + I +G + S +V + E+ V+
Sbjct: 332 FAIDLDFIVEEYTAG-KGKCPPQPRRKRRSLFIASIEKGAVLMDSLIDVQRPHEIGLVVV 390
Query: 189 DEIHYMKDRERGVVWEE---SIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVY 245
DE+H + ++ RG E ++FL I++V +SAT+ N ++ + + L+ VY
Sbjct: 391 DELHLIGEKGRGATLEAFLTKVMFLNANIQIVGMSATIGNLSEISSF---LNAD----VY 443
Query: 246 T-DFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFV 281
T FRP L+ Y+ G L L ++ Q E+ FV
Sbjct: 444 TRGFRPVELKEYI--KCGPDL-LEINSAGQTLEEIFV 477
Score = 59 (25.8 bits), Expect = 1.8e-11, Sum P(3) = 1.8e-11
Identities = 30/130 (23%), Positives = 57/130 (43%)
Query: 762 GRAACLIDTGDELLVTELMFNG---TFNDLDHHQVAALASCFIPVDKSSEQINLRMELAK 818
G + + + D LLV +++F+ + LD ++ L S + V +NL E +
Sbjct: 648 GESILIAQSKDNLLVGQMLFSPMDKALSSLDQNEAVGLQSLILSV----VGLNLA-ECRR 702
Query: 819 PLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIF 878
L +L S + +Q + LEV V+E V +R + + ++ ++ I +DI
Sbjct: 703 DLNRLVNST--LLSVQAK-SLEVAVNEIVLRILREMFKNKVLQLAEPQAKSK-INSSDII 758
Query: 879 EGSIIRSARR 888
+ A R
Sbjct: 759 TSQDVSQANR 768
>ZFIN|ZDB-GENE-081105-64 [details] [associations]
symbol:si:ch211-251j10.5 "si:ch211-251j10.5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 ZFIN:ZDB-GENE-081105-64 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
HOVERGEN:HBG051896 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 KO:K12854 GO:GO:0008026 EMBL:BX640472
EMBL:CR376723 IPI:IPI00608684 RefSeq:NP_001116729.1
UniGene:Dr.32574 SMR:B0S754 Ensembl:ENSDART00000109885
GeneID:799690 KEGG:dre:799690 NextBio:20933935 Uniprot:B0S754
Length = 2134
Score = 150 (57.9 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 45/150 (30%), Positives = 78/150 (52%)
Query: 320 IVKMIMERKFQ-PVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQN---AVDCLN 375
+ + IME + V+VF SR+E + A ++ + EKDT+ + + + L
Sbjct: 705 VYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCL----EKDTLGLFLREGSASTEVLR 760
Query: 376 EEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMP 435
E +EL LL G A+HH+G+ V + LVE LF + ++ L +T T A G+N+P
Sbjct: 761 TEAEQCKNLELK-DLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLP 819
Query: 436 AKTVVFTAVKKWDGDSHRY--IGSGEYIQM 463
A TV+ + + + R+ +G+ + +QM
Sbjct: 820 AHTVIIKGTQVYSPEKGRWTELGALDILQM 849
Score = 130 (50.8 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 56/216 (25%), Positives = 101/216 (46%)
Query: 66 NGEMAKTY-SFEL-DPFQ-RVSVACLERNESVLVSAHTSAGKTAVAEYAIA-MAFRDKQ- 120
NG Y +F +P Q +V A +++V V A T +GKT AE+AI M + +
Sbjct: 1311 NGAFESLYQNFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEG 1370
Query: 121 RVIYTSPLKALSNQKYRELHQEF-----KDVGLMTG----DVTLSPNASCLVMTTEI--L 169
R +Y +P++AL+ Q + + HQ+F K V L+TG D+ L +V T + +
Sbjct: 1371 RCVYITPMEALAEQVFLDWHQKFQENLNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDI 1430
Query: 170 RGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWE---ESIIFLPPAIKMVFLSATMSNA 226
++ + ++ V+ I DE+H + + G V E + ++ I+ +S++
Sbjct: 1431 LSRRWKQRKNVQNVSLFIIDEVHLIGG-DNGPVLEVICSRMRYISSQIERPIRIVALSSS 1489
Query: 227 TQFAEWICHLHKQPCHVVYT-----DFRPTPLQHYV 257
A+ + H C T + RP PL+ ++
Sbjct: 1490 LSNAKDVAHW--LGCSTTATFNFHPNVRPVPLELHI 1523
Score = 125 (49.1 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 42/155 (27%), Positives = 68/155 (43%)
Query: 330 QPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDC-LNEEDRNLPAIELML 388
+PV+VF SRR+ ++ +D T D V Q F ++ + L NL + L
Sbjct: 1553 KPVLVFVPSRRQTR-----LTAIDILTFCAADVVPQRFLHSTEKDLVPFMENLSDVTLK- 1606
Query: 389 PLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448
L G+ H GL P + +VE LF G ++ + A+ + G N+ A V+ + ++
Sbjct: 1607 ETLSNGVGYLHEGLSPTERRIVEHLFTSGAIQVVVASRSLCWGTNISAHLVIVMDTQYYN 1666
Query: 449 GDSHRYIGSGEY--IQMSXXXXXXXXXXXXICIIM 481
G H Y+ Y +QM C+IM
Sbjct: 1667 GKIHAYVDYPIYDVLQMVGKANRPLQDDEGRCVIM 1701
Score = 95 (38.5 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 46/158 (29%), Positives = 72/158 (45%)
Query: 121 RVIYTSPLKALSNQKYRELHQEFKDVGL----MTGDVTLSP---NASCLVMTTEILRGML 173
++IY +P+++L + + G+ +TGD L NA+ +++ T ++
Sbjct: 534 KIIYIAPMRSLVQEMVGSFGKRLASYGIIVSELTGDHQLCKEEINATQIIVCTPEKWDII 593
Query: 174 YR-GSE--VLKEVAWVIFDEIHYMKDRERGVVWEESII-------FLPPAIKMVFLSATM 223
R G E + V +I DEIH + D +RG V E I ++++ LSAT+
Sbjct: 594 TRKGGERTYTQLVRLIIIDEIHLLHD-DRGPVLESLIARTIRNVELTQEDVRLIGLSATL 652
Query: 224 SNATQFAEWICHLHKQPCH-VVYTD--FRPTPL-QHYV 257
N A C L P + Y D FRP PL Q YV
Sbjct: 653 PNYEDVAT--C-LRVDPSKGLFYFDNSFRPVPLEQTYV 687
Score = 61 (26.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 36/142 (25%), Positives = 62/142 (43%)
Query: 27 STKKQRNLTRSCVHEVAV-PSGYALTKDEAIHGTFANPVYNGEMAKTYSFE-LDPFQ-RV 83
S +KQR VH A+ P + +E + G P Y A F+ L+ Q ++
Sbjct: 431 SFRKQRKGYEE-VHVPALKPKPFG--DEETLVGIEKLPKY--AQAGFEGFKSLNRIQSKL 485
Query: 84 SVACLERNESVLVSAHTSAGKTAVAEYAIAMAF-----RDKQ------RVIYTSPLKALS 132
+E +E++LV A T AGKT VA A+ D ++IY +P+++L
Sbjct: 486 FKTTMETDENLLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVADFKIIYIAPMRSLV 545
Query: 133 NQKYRELHQEFKDVGLMTGDVT 154
+ + G++ ++T
Sbjct: 546 QEMVGSFGKRLASYGIIVSELT 567
>ASPGD|ASPL0000044033 [details] [associations]
symbol:AN2482 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
EMBL:BN001307 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 OMA:FPGKHYC InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 GO:GO:0008026 OrthoDB:EOG4H75KM
EMBL:AACD01000041 RefSeq:XP_660086.1 ProteinModelPortal:Q5BAE8
EnsemblFungi:CADANIAT00009203 GeneID:2875191 KEGG:ani:AN2482.2
Uniprot:Q5BAE8
Length = 2015
Score = 131 (51.2 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 40/127 (31%), Positives = 63/127 (49%)
Query: 330 QPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAI--ELM 387
+PVIVF SRR+ A + ++F E D + + + D L NL + + +
Sbjct: 1362 KPVIVFVASRRQTRLTAKDL--INFCGME--DNPRRFVRMSEDDLQ---LNLERVKDDAL 1414
Query: 388 LPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKW 447
L GI +HH+GL+ ++L E LF ++ L AT T A G+N+PA VV + +
Sbjct: 1415 REALSFGIGLHHAGLVESDRQLAEELFANNKIQILVATSTLAWGVNLPAHLVVVKGTQFF 1474
Query: 448 DGDSHRY 454
D + Y
Sbjct: 1475 DAKTEGY 1481
Score = 123 (48.4 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 43/157 (27%), Positives = 79/157 (50%)
Query: 62 NPVYNGEMAKTYSFELDPFQRVSVACLERNES-VLVSAHTSAGKTAVAEYAIAMAFRDK- 119
NP+ + + + +P Q L + VL+ + T +GKT AE A+ AFR++
Sbjct: 1119 NPILEELYGQRFQY-FNPMQTQLFHVLYHTAANVLLGSPTGSGKTVAAELAMWWAFRERP 1177
Query: 120 -QRVIYTSPLKALSNQKYRELHQEFK-DVGL----MTGDVTLSP----NASCLVMTTEIL 169
+V+Y +P+KAL ++ + + +GL +TGD T +A ++ T E
Sbjct: 1178 GSKVVYIAPMKALVRERVMDWGRRLTAPMGLKLVELTGDNTPDTRTIRDADIIITTPEKW 1237
Query: 170 RGML--YRGSEVLKEVAWVIFDEIHYMKDRERGVVWE 204
G+ ++ + +++V+ VI DEIH + +RG + E
Sbjct: 1238 DGISRSWQTRDYVRKVSLVIIDEIHLLGG-DRGPILE 1273
Score = 97 (39.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 35/135 (25%), Positives = 70/135 (51%)
Query: 90 RNESVLVSAHTSAGKTAV---AEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEF 143
+ ++ +++ + GK V AE A F D +++Y +P+KAL+ + +L +
Sbjct: 314 KTDAAMLTILNAVGKNTVPNPAEQPGATEFSVLVDDFKIVYVAPMKALAAEVTEKLGKRL 373
Query: 144 KDVGL----MTGDVTLSPNA---SCLVMTTEILRGMLYRGS----EVLKEVAWVIFDEIH 192
+G+ +TGD+ L+ + +++TT ++ R S E++++V +I DE+H
Sbjct: 374 AWLGIKVRELTGDMQLTKREIVETQIIVTTPEKWDVVTRKSTGDTELVQKVRLLIIDEVH 433
Query: 193 YMKDRERGVVWEESI 207
+ D ERG V E +
Sbjct: 434 MLHD-ERGAVIESLV 447
Score = 96 (38.9 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 38/132 (28%), Positives = 67/132 (50%)
Query: 149 MTGDVTLSPNA---SCLVMTTEILRGMLYRGS----EVLKEVAWVIFDEIHYMKDRERGV 201
+TGD+ L+ + +++TT ++ R S E++++V +I DE+H + D ERG
Sbjct: 383 LTGDMQLTKREIVETQIIVTTPEKWDVVTRKSTGDTELVQKVRLLIIDEVHMLHD-ERGA 441
Query: 202 VWEESII-------FLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVY-TDFRPTPL 253
V E + I++V LSAT+ N A+++ ++K + + FRP PL
Sbjct: 442 VIESLVARTQRQVESTQSLIRIVGLSATLPNYVDVADFL-KVNKMAGLFFFDSSFRPVPL 500
Query: 254 -QHYVFPVGGSG 264
QH++ G G
Sbjct: 501 EQHFIGVKGKPG 512
Score = 78 (32.5 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 29/121 (23%), Positives = 59/121 (48%)
Query: 150 TGDVTLSPNASCLVMTTEILRGML--YRGSEVLKEVAWVIFDEIHYMKDRERGVVWE--- 204
T D +A ++ T E G+ ++ + +++V+ VI DEIH + +RG + E
Sbjct: 1218 TPDTRTIRDADIIITTPEKWDGISRSWQTRDYVRKVSLVIIDEIHLLGG-DRGPILEIIV 1276
Query: 205 ESIIFLPP----AIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYV--F 258
+ ++ +++++ +S +NA+ A W+ K+ + RP PL+ Y+ F
Sbjct: 1277 SRMNYIASQSKGSVRLMGMSTACANASDLANWLGV--KEGLYNFRHSVRPVPLEIYIDGF 1334
Query: 259 P 259
P
Sbjct: 1335 P 1335
Score = 47 (21.6 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDV 146
+E++L+ A T AGKT A I A K V +P + ++ L +FK V
Sbjct: 301 SENMLICAPTGAGKTDAAMLTILNAV-GKNTV--PNPAEQPGATEFSVLVDDFKIV 353
Score = 45 (20.9 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 18/72 (25%), Positives = 30/72 (41%)
Query: 80 FQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVI--------YTSPLKAL 131
F++V LER V+V H+ A MA +D + Y++ L+ +
Sbjct: 525 FEKVR-DMLERGHQVMVFVHSRKDTVLTARMLKQMAVQDGCEALFSCHEHENYSNALRDM 583
Query: 132 SNQKYRELHQEF 143
+ + REL F
Sbjct: 584 KHARARELRDLF 595
Score = 41 (19.5 bits), Expect = 7.4e-06, Sum P(3) = 7.4e-06
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 64 VYNGEMAKTYSFELDPFQRVSV 85
V+N +M KT + LD F +SV
Sbjct: 970 VHNHKMGKTLAKLLDNFPTLSV 991
>UNIPROTKB|A2PYH4 [details] [associations]
symbol:HFM1 "Probable ATP-dependent DNA helicase HFM1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 eggNOG:COG1204 GO:GO:0008026 KO:K15271
EMBL:AB204867 EMBL:AK094079 EMBL:BX323048 EMBL:AC098691
IPI:IPI00374013 IPI:IPI00852603 RefSeq:NP_001017975.3
UniGene:Hs.454818 ProteinModelPortal:A2PYH4 SMR:A2PYH4
STRING:A2PYH4 PhosphoSite:A2PYH4 PaxDb:A2PYH4 PRIDE:A2PYH4
Ensembl:ENST00000294696 Ensembl:ENST00000370425 GeneID:164045
KEGG:hsa:164045 UCSC:uc001doa.4 CTD:164045 GeneCards:GC01M091726
HGNC:HGNC:20193 HPA:HPA035557 neXtProt:NX_A2PYH4
PharmGKB:PA142671690 HOGENOM:HOG000293238 HOVERGEN:HBG103774
InParanoid:A2PYH4 OMA:EADEMKS OrthoDB:EOG44XJHC ChiTaRS:HFM1
GenomeRNAi:164045 NextBio:88429 ArrayExpress:A2PYH4 Bgee:A2PYH4
CleanEx:HS_HFM1 Genevestigator:A2PYH4 Uniprot:A2PYH4
Length = 1435
Score = 127 (49.8 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 50/186 (26%), Positives = 83/186 (44%)
Query: 317 IFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSK-LDF-NTQEEKDTVEQVFQNAVDCL 374
I +++M ++K P +VF +R+ +Q A + K F T E+K +++ + +V
Sbjct: 517 IASVIQMYSDQK--PTLVFCATRKGVQQAASVLVKDAKFIMTVEQKQRLQK-YAYSV--- 570
Query: 375 NEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNM 434
D L I LK G A HH+G+ +++VE F G + LF T T AMG+N+
Sbjct: 571 --RDSKLRDI------LKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNL 622
Query: 435 PAKTVVFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMV-----DEQMEMN 489
PA VV + + G + +QM +IM D+ ++M
Sbjct: 623 PAHLVVIKSTMHYAGGLFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTRDKYIQML 682
Query: 490 TLKDMV 495
+D V
Sbjct: 683 ACRDTV 688
Score = 126 (49.4 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 40/157 (25%), Positives = 77/157 (49%)
Query: 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ------RVIYTSPLKALSNQKYRELHQ 141
L + + ++ A T +GKT V E AI + +++Y +P+KAL +Q++ + +
Sbjct: 293 LYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNIKIVYMAPIKALCSQRFDDWKE 352
Query: 142 EFKDVGL----MTGDVTLSP-----NASCLVMTTEILRGML--YRGSEVLKEVAWVIFDE 190
+F +GL +TGD + +A ++ T E M +R + +++ V + DE
Sbjct: 353 KFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDE 412
Query: 191 IHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNAT 227
+H +KD RG E ++ ++ V S T+ N +
Sbjct: 413 VHIVKDENRGPTLEV-VVSRMKTVQSV--SQTLKNTS 446
Score = 75 (31.5 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 30/104 (28%), Positives = 46/104 (44%)
Query: 174 YRGSEVLKEVAWVIFDEIHYMKDRERGVVWE-------------ESIIFLPPAIKMVFL- 219
+R + +++ V + DE+H +KD RG E +++ AI M F+
Sbjct: 396 WRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTAIPMRFVA 455
Query: 220 -SATMSNATQFAEWICHLHKQP-CHVVYTDFRPTPLQHYV--FP 259
SAT+ NA AEW+ + C + RP LQ V FP
Sbjct: 456 VSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVVLGFP 499
Score = 46 (21.3 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 724 KSKMRDSQIQKFRDELKNRSRV 745
KS++++S I + +L+NR+ V
Sbjct: 1165 KSEIKESTISSYLSDLRNRNAV 1186
>UNIPROTKB|G4N5J1 [details] [associations]
symbol:MGG_06124 "Activating signal cointegrator 1 complex
subunit 3" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0043581 "mycelium development" evidence=IEP]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 EMBL:CM001233 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K01529 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 GO:GO:0008026 RefSeq:XP_003711991.1
ProteinModelPortal:G4N5J1 EnsemblFungi:MGG_06124T0 GeneID:2684274
KEGG:mgr:MGG_06124 Uniprot:G4N5J1
Length = 1998
Score = 151 (58.2 bits), Expect = 1.7e-10, Sum P(5) = 1.7e-10
Identities = 41/141 (29%), Positives = 70/141 (49%)
Query: 318 FKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEE 377
F V+ ++E+ Q V+VF SRR+ Q A + + + Q D + D +
Sbjct: 531 FDKVREMLEKDHQ-VMVFVHSRRDTLQTAKMLHERAVD-QACLDLFDPSMHPKYDAAIRD 588
Query: 378 DRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAK 437
+ A EL L+ +G+ +HH+G+ + L+E LF EG++K L T T A G+N+PA
Sbjct: 589 MKTCKARELR-DLVPKGMGIHHAGMTRSDRNLMERLFAEGVLKVLCCTATLAWGVNLPAA 647
Query: 438 TVVFTAVKKWDGDSHRYIGSG 458
VV + + +++ G
Sbjct: 648 AVVIKGTQVYSAQEGKFVDLG 668
Score = 139 (54.0 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
Identities = 52/187 (27%), Positives = 94/187 (50%)
Query: 58 GTFANPVYNGEMAKTYSFELDPFQ-RVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF 116
G NP+ A+ + + +P Q ++ +VL+ + T +GKT AE A+ AF
Sbjct: 1136 GALKNPILEHVYAQRFQY-FNPMQTQIFHTLYHTPANVLLGSPTGSGKTVAAELAMWWAF 1194
Query: 117 RDK--QRVIYTSPLKALSNQKYRELHQEF-KDVGL----MTGDVTLSP----NASCLVMT 165
R++ +V+Y +P+KAL ++ ++ + +GL +TGD T +A ++ T
Sbjct: 1195 RERPGSKVVYIAPMKALVRERVKDWGARLAQPMGLKLVELTGDNTPDTRTIKDADVIITT 1254
Query: 166 TE----ILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSA 221
E I R RG +++V+ VI DEIH + +RG + E II +M +++A
Sbjct: 1255 PEKWDGISRSWQTRG--YVRQVSLVIIDEIHLLAG-DRGPILE--II----VSRMNYIAA 1305
Query: 222 TMSNATQ 228
+ N+ +
Sbjct: 1306 STKNSVR 1312
Score = 123 (48.4 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
Identities = 41/129 (31%), Positives = 61/129 (47%)
Query: 330 QPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLP 389
+PVIVF SRR+ A + N +D + F N ++E+D L +
Sbjct: 1383 KPVIVFVPSRRQTRLTAKDL----INMCGMEDNPRR-FLN----MDEDDLQLNLTRVKDD 1433
Query: 390 LLKR----GIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVK 445
LK GI +HH+GL+ ++L E LF ++ L AT T A G+N+PA VV +
Sbjct: 1434 ALKEAISFGIGLHHAGLVESDRQLAEELFLNNKIQILVATSTLAWGVNLPAHLVVVKGTQ 1493
Query: 446 KWDGDSHRY 454
+D Y
Sbjct: 1494 FYDAKIEGY 1502
Score = 101 (40.6 bits), Expect = 1.7e-10, Sum P(5) = 1.7e-10
Identities = 43/155 (27%), Positives = 70/155 (45%)
Query: 150 TGDVTLSPN----ASCLVMTTEILRGMLYRGS---EVLKEVAWVIFDEIHYMKDRERGVV 202
TGD+ L+ +V T E + +G+ E++++V +I DE+H + D ERG V
Sbjct: 390 TGDMHLTKTEIVQTQIIVTTPEKWDVVTRKGTGDTELVQKVRLLIIDEVHMLHD-ERGAV 448
Query: 203 WEESII-------FLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPL-Q 254
E + I++V LSAT+ N A+++ Q FRP PL Q
Sbjct: 449 LESLVARTERQVESTQSLIRIVGLSATLPNFIDVADFLKVNRMQGLFYFDASFRPVPLEQ 508
Query: 255 HYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLK 289
H++ G +G +E E F K+++ K
Sbjct: 509 HFIGVKGKAG---TKQSRENLDEVAFDKVREMLEK 540
Score = 86 (35.3 bits), Expect = 5.5e-08, Sum P(4) = 5.5e-08
Identities = 27/98 (27%), Positives = 52/98 (53%)
Query: 121 RVIYTSPLKALSNQKYRELHQEFKDVGLM----TGDVTLSPN----ASCLVMTTEILRGM 172
+++Y +P+KAL+ + +L + +G+ TGD+ L+ +V T E +
Sbjct: 357 KIVYVAPMKALAAEITEKLGKRLAWLGIRCREYTGDMHLTKTEIVQTQIIVTTPEKWDVV 416
Query: 173 LYRGS---EVLKEVAWVIFDEIHYMKDRERGVVWEESI 207
+G+ E++++V +I DE+H + D ERG V E +
Sbjct: 417 TRKGTGDTELVQKVRLLIIDEVHMLHD-ERGAVLESLV 453
Score = 76 (31.8 bits), Expect = 9.8e-06, Sum P(4) = 9.8e-06
Identities = 32/123 (26%), Positives = 56/123 (45%)
Query: 150 TGDVTLSPNASCLVMTTE----ILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWE- 204
T D +A ++ T E I R RG +++V+ VI DEIH + +RG + E
Sbjct: 1239 TPDTRTIKDADVIITTPEKWDGISRSWQTRG--YVRQVSLVIIDEIHLLAG-DRGPILEI 1295
Query: 205 --ESIIFLPPA----IKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYV- 257
+ ++ + ++++ +S +NAT W+ K+ RP PL+ Y+
Sbjct: 1296 IVSRMNYIAASTKNSVRLLGMSTACANATDLGNWLGV--KEGLFNFRHSVRPVPLELYID 1353
Query: 258 -FP 259
FP
Sbjct: 1354 GFP 1356
Score = 54 (24.1 bits), Expect = 1.7e-10, Sum P(5) = 1.7e-10
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDV 146
NE++LV A T AGKT A I A + + +PL+ + + ++FK V
Sbjct: 307 NENMLVCAPTGAGKTDAAMLTILHAIG---QYVTPNPLQNTTATDFAVHTEDFKIV 359
Score = 43 (20.2 bits), Expect = 0.00011, Sum P(4) = 0.00011
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 60 FANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSA--HTSAGKTAVA 108
F +P++ E+ K +LD +SV + E+ + A H T +A
Sbjct: 951 FQHPLHQFELPKPILNQLDAKDSLSVEAMRDMEAAEIGALVHNHGAGTKLA 1001
Score = 41 (19.5 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 775 LVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPL 820
LV TF D+ A+ +PV + + IN+ + A P+
Sbjct: 1666 LVKNAKAGATFADVLSWMCRAIEYDELPVRHNEDLINIELSKALPI 1711
Score = 38 (18.4 bits), Expect = 1.7e-10, Sum P(5) = 1.7e-10
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 623 PLISTLSKIRLSVPPDLR 640
PL + +IRL + PD R
Sbjct: 1018 PLNRDVLRIRLFITPDFR 1035
>UNIPROTKB|F1S4E9 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:CU179709
Ensembl:ENSSSCT00000007570 Uniprot:F1S4E9
Length = 1438
Score = 129 (50.5 bits), Expect = 8.0e-11, Sum P(3) = 8.0e-11
Identities = 43/156 (27%), Positives = 77/156 (49%)
Query: 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ------RVIYTSPLKALSNQKYRELHQ 141
L + +V+V A T +GKT + E AI + +++Y +P+KAL +Q++ + +
Sbjct: 295 LYTDRNVVVCAPTGSGKTVMFELAITRLLMEVPLPWSNIKIVYMAPIKALCSQRFDDWKE 354
Query: 142 EFKDVGL----MTGDVTLSP-----NASCLVMTTEILRGML--YRGSEVLKEVAWVIFDE 190
+F +GL +TGD + +A ++ T E M +R + +++ V + DE
Sbjct: 355 KFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDE 414
Query: 191 IHYMKDRERGVVWEESIIFLPPAIKMV-FLSATMSN 225
+H +KD RG E + +K V FLS + N
Sbjct: 415 VHVVKDENRGPTLEVVV----SRMKTVQFLSHAVEN 446
Score = 121 (47.7 bits), Expect = 8.0e-11, Sum P(3) = 8.0e-11
Identities = 51/201 (25%), Positives = 83/201 (41%)
Query: 318 FKIVKMIMERKFQ-PVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNE 376
+KI ++ Q P +VF +R+ +Q A + K + TVEQ Q C
Sbjct: 517 YKIASVVQTYSDQKPTLVFCATRKGVQQAASILVK----DAKFIMTVEQK-QRLHKCAYS 571
Query: 377 -EDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMP 435
D L LL G+A HH+G+ +++VE F G + LF T T AMG+N+P
Sbjct: 572 IRDSKLR------DLLIHGVAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLP 625
Query: 436 AKTVVFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTLKDMV 495
A VV + + G + +QM +IM ++T K+
Sbjct: 626 AHLVVIKSTMHYAGGMFEEYSETDILQMIGRAGRPQFDTTATAVIMT----RLST-KEKY 680
Query: 496 LEGQFTAEHVIKNSFHQFQYE 516
++ +++S H+ E
Sbjct: 681 IQ-MLACSDTVESSLHRHLIE 700
Score = 80 (33.2 bits), Expect = 7.0e-06, Sum P(3) = 7.0e-06
Identities = 29/104 (27%), Positives = 48/104 (46%)
Query: 174 YRGSEVLKEVAWVIFDEIHYMKDRERGVVWE------ESIIFLPPAI---------KMVF 218
+R + +++ V + DE+H +KD RG E +++ FL A+ + V
Sbjct: 398 WRDNSLVQLVRLFLIDEVHVVKDENRGPTLEVVVSRMKTVQFLSHAVENPRNIIPMRFVA 457
Query: 219 LSATMSNATQFAEWICHLHKQP-CHVVYTDFRPTPLQHYV--FP 259
+SAT+ NA AEW+ + C + RP L+ V FP
Sbjct: 458 VSATIPNAEDIAEWLSDGERSAICLKMDEKHRPVKLRKVVLGFP 501
Score = 45 (20.9 bits), Expect = 8.0e-11, Sum P(3) = 8.0e-11
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 724 KSKMRDSQIQKFRDELKNRSRV 745
K +M++S I + +L+NR+ V
Sbjct: 1166 KPEMKESTISSYLSDLRNRNAV 1187
>UNIPROTKB|F1SU44 [details] [associations]
symbol:F1SU44 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
GeneTree:ENSGT00640000091272 GO:GO:0008026 EMBL:CU896688
Ensembl:ENSSSCT00000008903 OMA:NETIATY Uniprot:F1SU44
Length = 1027
Score = 150 (57.9 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 45/150 (30%), Positives = 78/150 (52%)
Query: 320 IVKMIMERKFQ-PVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQN---AVDCLN 375
+ + IME + V+VF SR+E + A ++ + EKDT+ + + + L
Sbjct: 708 VYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCL----EKDTLGLFLREGSASTEVLR 763
Query: 376 EEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMP 435
E +EL LL G A+HH+G+ V + LVE LF + ++ L +T T A G+N+P
Sbjct: 764 TEAEQCKNLELK-DLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLP 822
Query: 436 AKTVVFTAVKKWDGDSHRY--IGSGEYIQM 463
A TV+ + + + R+ +G+ + +QM
Sbjct: 823 AHTVIIKGTQVYSPEKGRWTELGALDILQM 852
Score = 92 (37.4 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 45/161 (27%), Positives = 70/161 (43%)
Query: 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGL----MTGDVTLSPN----ASCLVMTTEIL 169
D ++IY +P+++L + + G+ +TGD L +V T E
Sbjct: 534 DDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKW 593
Query: 170 RGMLYRGSE--VLKEVAWVIFDEIHYMKDRERGVVWE-------ESIIFLPPAIKMVFLS 220
+ +G E + V +I DEIH + D +RG V E +I ++++ LS
Sbjct: 594 DIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLS 652
Query: 221 ATMSNATQFAEWICHLHKQPCH-VVYTD--FRPTPL-QHYV 257
AT+ N A + L P + Y D FRP PL Q YV
Sbjct: 653 ATLPNYEDVATF---LRVDPAKGLFYFDNSFRPVPLEQTYV 690
Score = 61 (26.5 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 86 ACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-----------DKQRVIYTSPLKALSNQ 134
A LE +E++L+ A T AGKT VA + D ++IY +P+++L +
Sbjct: 491 AALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 550
Query: 135 KYRELHQEFKDVGLMTGDVT 154
+ G+ ++T
Sbjct: 551 MVGSFGKRLATYGITVAELT 570
>SGD|S000003220 [details] [associations]
symbol:HFM1 "Meiosis specific DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0007129 "synapsis" evidence=IGI;IMP]
[GO:0003678 "DNA helicase activity" evidence=IDA] [GO:0007126
"meiosis" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 SGD:S000003220 GO:GO:0005524
GO:GO:0005634 EMBL:BK006941 GO:GO:0046872 GO:GO:0003677 EMBL:X94357
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0007131 GO:GO:0008026 GO:GO:0007129
GO:GO:0006268 KO:K15271 EMBL:Z72773 EMBL:U22156 RefSeq:NP_011263.2
ProteinModelPortal:P51979 SMR:P51979 DIP:DIP-2604N IntAct:P51979
MINT:MINT-426642 STRING:P51979 PaxDb:P51979 PeptideAtlas:P51979
EnsemblFungi:YGL251C GeneID:852641 KEGG:sce:YGL251C CYGD:YGL251c
GeneTree:ENSGT00550000074822 HOGENOM:HOG000093662 OMA:GNYECNH
OrthoDB:EOG4WWVSR NextBio:971894 Genevestigator:P51979
GermOnline:YGL251C Uniprot:P51979
Length = 1187
Score = 132 (51.5 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 41/171 (23%), Positives = 80/171 (46%)
Query: 329 FQPVIVFSFSRREC-EQHAMSMSKLDF-NTQEEK-DTVEQVFQNAVDCLNEEDRNL-PAI 384
FQ +++ E E+HA + L F T+ T + + N + +++ N P+
Sbjct: 351 FQKDAIYNSKLIEIIEKHADNRPVLIFCPTRASTISTAKFLLNNHIFSKSKKRCNHNPSD 410
Query: 385 ELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAV 444
+++ +++GIA HH+G+ + VE F G + L +T T A+G+N+PA V+
Sbjct: 411 KILNECMQQGIAFHHAGISLEDRTAVEKEFLAGSINILCSTSTLAVGVNLPAYLVIIKGT 470
Query: 445 KKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTLKDMV 495
K W+ + + +QM +IM D +M+ T ++++
Sbjct: 471 KSWNSSEIQEYSDLDVLQMIGRAGRPQFETHGCAVIMTDSKMKQ-TYENLI 520
Score = 117 (46.2 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 39/132 (29%), Positives = 68/132 (51%)
Query: 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ------RVIYTSPLKALSNQKYRELHQE 142
E NE+ ++S+ T +GKT + E AI ++ ++IY +P K+L + Y+
Sbjct: 152 ESNENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNWFPS 211
Query: 143 FKD--VGLMTGDVTL--SPNAS-C-LVMTTEILRGMLYRG----SEVLKEVAWVIFDEIH 192
F + VG++T D + + A C +++TT +L R S + + V V+ DEIH
Sbjct: 212 FVNLSVGMLTSDTSFLETEKAKKCNIIITTPEKWDLLTRRWSDYSRLFELVKLVLVDEIH 271
Query: 193 YMKDRERGVVWE 204
+K++ RG E
Sbjct: 272 TIKEK-RGASLE 282
Score = 115 (45.5 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 42/153 (27%), Positives = 76/153 (49%)
Query: 121 RVIYTSPLKALSNQKYRELHQEFKD--VGLMTGDVTL--SPNAS-C-LVMTTEILRGMLY 174
++IY +P K+L + Y+ F + VG++T D + + A C +++TT +L
Sbjct: 190 KIIYIAPTKSLCYEMYKNWFPSFVNLSVGMLTSDTSFLETEKAKKCNIIITTPEKWDLLT 249
Query: 175 RG----SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPA---IKMVFLSATMSNAT 227
R S + + V V+ DEIH +K++ RG E + + I+ V LSAT+ N
Sbjct: 250 RRWSDYSRLFELVKLVLVDEIHTIKEK-RGASLEVILTRMNTMCQNIRFVALSATVPNIE 308
Query: 228 QFAEWICHLHKQPCHVVYTD--FRPTPLQHYVF 258
A W+ ++ P +++ D +R L +V+
Sbjct: 309 DLALWLKTNNELPANILSFDESYRQVQLTKFVY 341
Score = 41 (19.5 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 668 PVKDMKIEDPEVVDLVNQIEELEHKLFAHPLN 699
PVK +K + P + V++ +++ L A +N
Sbjct: 1059 PVKYIKEKGPSSIKPVSKPDQIRQPLLAKNIN 1090
>RGD|1309795 [details] [associations]
symbol:Polq "polymerase (DNA directed), theta" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=ISO] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 RGD:1309795 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0003887 OMA:CFSDESI IPI:IPI00362354
Ensembl:ENSRNOT00000034841 UCSC:RGD:1309795 Uniprot:D4ABI8
Length = 2540
Score = 120 (47.3 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
Identities = 34/133 (25%), Positives = 73/133 (54%)
Query: 320 IVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTV--EQVF-------Q 368
IV + E R V+VF S++ CE+ A +++ +N + + + F +
Sbjct: 327 IVSLCYETVRDNHSVLVFCPSKKWCEKVADIIAREFYNLHHQPEGLVKSSEFPPVILDQK 386
Query: 369 NAVDCLNEEDRNLPAIELMLP-LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATET 427
+ ++ +++ R+ ++ +L + G+A HH+GL ++++E F++GL++ L AT T
Sbjct: 387 SLLEVIDQLKRSPSGLDSVLKNTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATST 446
Query: 428 FAMGLNMPAKTVV 440
+ G+N+PA+ V+
Sbjct: 447 LSSGVNLPARRVI 459
Score = 109 (43.4 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
Identities = 38/123 (30%), Positives = 64/123 (52%)
Query: 92 ESVLVSAHTSAGKTAVAEYAIAM-AFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGL-M 149
++++ SA TSAGKT VAE I +++ ++ P +++ +K L F++VG+ +
Sbjct: 110 KNLVYSAPTSAGKTLVAELLILKRVLETRKKALFILPFVSVAKEKKYYLQSLFQEVGIKV 169
Query: 150 TGDV-TLSPNA--SCL---VMTTEILRGMLYRGSEVLKE--VAWVIFDEIHYMKDRERGV 201
G + + SP S L V T E G++ R E K + V+ DE+H + D RG
Sbjct: 170 DGYMGSTSPTGRFSSLDVAVCTIERANGLINRLIEENKMDLLGTVVVDELHMLGDSHRGY 229
Query: 202 VWE 204
+ E
Sbjct: 230 LLE 232
Score = 69 (29.3 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 205 ESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGS 263
+S L A+++V +SAT+ N A W+ + +TDFRP PL + VG S
Sbjct: 251 DSASALACAVQIVGMSATLPNLQLVASWL------NAELYHTDFRPVPLLESI-KVGNS 302
Score = 50 (22.7 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 550 LKLDIAQLEKKLMSEITRPERVLYYLGSG 578
L D +QLE ++++ ++R R++ L SG
Sbjct: 2277 LAADYSQLELRILAHLSRDCRLIQVLNSG 2305
Score = 48 (22.0 bits), Expect = 1.2e-09, Sum P(5) = 1.2e-09
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 707 IRCFQRKAEVNHEIQQLKSKMRDSQIQKF--RDELKNRSRVLK-KLGHIDADGVVQLKGR 763
+ CF+ + +HE Q + S + Q F + +K+R+ L+ K H A + K
Sbjct: 1625 LSCFEENSTESHERQDMNSDLGTVQRTSFLPSNGVKSRTEGLESKAKHGGASSALPHKAA 1684
Query: 764 A 764
A
Sbjct: 1685 A 1685
Score = 37 (18.1 bits), Expect = 1.2e-09, Sum P(5) = 1.2e-09
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 547 YHKLKLDIAQLEKKLMSEITR 567
+H ++L ++Q +K+L I R
Sbjct: 772 WHNMELLLSQFQKRLTFGIQR 792
>UNIPROTKB|D4A628 [details] [associations]
symbol:Polq "Polymerase (DNA directed), theta (Predicted),
isoform CRA_a" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 RGD:1309795 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00640000091272 GO:GO:0008026
GO:GO:0003887 GO:GO:0043142 CTD:10721 KO:K02349 OrthoDB:EOG42RD6C
EMBL:CH473967 IPI:IPI00949142 RefSeq:NP_001099348.1
UniGene:Rn.131176 Ensembl:ENSRNOT00000063995 GeneID:288079
KEGG:rno:288079 NextBio:627549 Uniprot:D4A628
Length = 2547
Score = 120 (47.3 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
Identities = 34/133 (25%), Positives = 73/133 (54%)
Query: 320 IVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTV--EQVF-------Q 368
IV + E R V+VF S++ CE+ A +++ +N + + + F +
Sbjct: 327 IVSLCYETVRDNHSVLVFCPSKKWCEKVADIIAREFYNLHHQPEGLVKSSEFPPVILDQK 386
Query: 369 NAVDCLNEEDRNLPAIELMLP-LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATET 427
+ ++ +++ R+ ++ +L + G+A HH+GL ++++E F++GL++ L AT T
Sbjct: 387 SLLEVIDQLKRSPSGLDSVLKNTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATST 446
Query: 428 FAMGLNMPAKTVV 440
+ G+N+PA+ V+
Sbjct: 447 LSSGVNLPARRVI 459
Score = 109 (43.4 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
Identities = 38/123 (30%), Positives = 64/123 (52%)
Query: 92 ESVLVSAHTSAGKTAVAEYAIAM-AFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGL-M 149
++++ SA TSAGKT VAE I +++ ++ P +++ +K L F++VG+ +
Sbjct: 110 KNLVYSAPTSAGKTLVAELLILKRVLETRKKALFILPFVSVAKEKKYYLQSLFQEVGIKV 169
Query: 150 TGDV-TLSPNA--SCL---VMTTEILRGMLYRGSEVLKE--VAWVIFDEIHYMKDRERGV 201
G + + SP S L V T E G++ R E K + V+ DE+H + D RG
Sbjct: 170 DGYMGSTSPTGRFSSLDVAVCTIERANGLINRLIEENKMDLLGTVVVDELHMLGDSHRGY 229
Query: 202 VWE 204
+ E
Sbjct: 230 LLE 232
Score = 69 (29.3 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 205 ESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGS 263
+S L A+++V +SAT+ N A W+ + +TDFRP PL + VG S
Sbjct: 251 DSASALACAVQIVGMSATLPNLQLVASWL------NAELYHTDFRPVPLLESI-KVGNS 302
Score = 50 (22.7 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 550 LKLDIAQLEKKLMSEITRPERVLYYLGSG 578
L D +QLE ++++ ++R R++ L SG
Sbjct: 2284 LAADYSQLELRILAHLSRDCRLIQVLNSG 2312
Score = 48 (22.0 bits), Expect = 1.2e-09, Sum P(5) = 1.2e-09
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 707 IRCFQRKAEVNHEIQQLKSKMRDSQIQKF--RDELKNRSRVLK-KLGHIDADGVVQLKGR 763
+ CF+ + +HE Q + S + Q F + +K+R+ L+ K H A + K
Sbjct: 1632 LSCFEENSTESHERQDMNSDLGTVQRTSFLPSNGVKSRTEGLESKAKHGGASSALPHKAA 1691
Query: 764 A 764
A
Sbjct: 1692 A 1692
Score = 37 (18.1 bits), Expect = 1.2e-09, Sum P(5) = 1.2e-09
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 547 YHKLKLDIAQLEKKLMSEITR 567
+H ++L ++Q +K+L I R
Sbjct: 770 WHNMELLLSQFQKRLTFGIQR 790
>UNIPROTKB|F1NYH9 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
OMA:SRPLENC EMBL:AADN02009041 IPI:IPI00596471
Ensembl:ENSGALT00000018274 Uniprot:F1NYH9
Length = 995
Score = 144 (55.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 70/300 (23%), Positives = 127/300 (42%)
Query: 280 FVKLQDTFLKQKIGGRRENXXXXXXXXXXXXXXXX--XDIFKIVKMIME--RKFQPVIVF 335
++K++DT + + + EN D IV ++ E K+ ++F
Sbjct: 434 YIKIRDTIYE--VDSKAENGFTFSRLLNFKYSSSLEKADPDHIVALVTEVIPKYS-CLIF 490
Query: 336 SFSRRECEQHAMSMSKL---DFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLK 392
+++ CE A + K +F EK+ + + +N D N P + +P
Sbjct: 491 CPTKKNCENVATMVCKYLNKEFRAHREKEK-QDLIKNLKDIGNGSI--CPVLRQTIPF-- 545
Query: 393 RGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSH 452
G+A HHSGL ++ +E + G++ L T T A G+N+PA+ V+ A +
Sbjct: 546 -GVAYHHSGLTNDERKSIEEAYSRGVLCLLACTATLAAGVNLPARRVILRAPYV----AS 600
Query: 453 RYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTLKDMV---LEGQFTAEHVIKNS 509
++ +Y QM I++V E+ + + ++D++ LE ++ +++
Sbjct: 601 EFLKKNQYKQMIGRAGRAGIDNAGESILVVQEK-DKHLVRDLITSPLENCYS--NLLPEI 657
Query: 510 FHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLMSEITRPE 569
QY L +G K++ +EE S V + LK EK L SEI R E
Sbjct: 658 TKGMQY-LLLSLVGLKIAVTQEEVYSFMCHTLLGVQQQLLLK------EKSL-SEIVRDE 709
Score = 96 (38.9 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 46/192 (23%), Positives = 88/192 (45%)
Query: 83 VSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQR-VIYTSPLKALSNQKYRELHQ 141
+++ L++ ++++ S TS GKT VAE I +Q+ V+ P A+ +K L
Sbjct: 251 LTLKSLQQRKNLIYSLPTSGGKTLVAEILILQELLCRQKDVLMILPYVAIVQEKVWGLSS 310
Query: 142 EFKDVGLMTGDVTLS----P------NASCLVMTTEILRGMLYRGSEV--LKEVAWVIFD 189
++G + + S P S + T E ++ E + ++ V+ D
Sbjct: 311 FGIELGFLVEEYAGSKGRFPPIKRRIKKSLYIATIEKGHALVNSLIETDRIDDLGLVVVD 370
Query: 190 EIHYMKDRERGVVWEES---IIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYT 246
E+H + + RG V E + I++ +V +SAT++N +++ Q + YT
Sbjct: 371 ELHMIGEGSRGAVLEMTLAKILYASKNTHVVGMSATLNNVGDLQKFL-----QAEY--YT 423
Query: 247 -DFRPTPLQHYV 257
+FRP L+ Y+
Sbjct: 424 KNFRPVELKEYI 435
>TAIR|locus:2037375 [details] [associations]
symbol:emb1507 "embryo defective 1507" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=NAS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] [GO:0033044 "regulation of chromosome
organization" evidence=RCA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 EMBL:CP002684 GO:GO:0005829
GO:GO:0005524 GO:GO:0005730 GO:GO:0016020 GO:GO:0003676
GO:GO:0030529 EMBL:AC007369 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 KO:K12854 OMA:KWDVLSR
GO:GO:0008026 ProtClustDB:CLSN2679454 IPI:IPI00536616 PIR:E86342
RefSeq:NP_001185050.1 RefSeq:NP_173520.1 UniGene:At.11196
UniGene:At.21273 ProteinModelPortal:Q9SYP1 SMR:Q9SYP1 IntAct:Q9SYP1
STRING:Q9SYP1 PRIDE:Q9SYP1 ProMEX:Q9SYP1 EnsemblPlants:AT1G20960.1
EnsemblPlants:AT1G20960.2 GeneID:838690 KEGG:ath:AT1G20960
TAIR:At1g20960 InParanoid:Q9SYP1 PhylomeDB:Q9SYP1
Genevestigator:Q9SYP1 Uniprot:Q9SYP1
Length = 2171
Score = 139 (54.0 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 37/120 (30%), Positives = 67/120 (55%)
Query: 332 VIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVF-QNAV--DCLNEEDRNLPAIELML 388
V++F SR+E + A ++ +T DT+ + +++V D L+ + + +L
Sbjct: 745 VLIFVHSRKETSKTARAIR----DTAMANDTLSRFLKEDSVTRDVLHSHEDIVKNSDLK- 799
Query: 389 PLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448
+L G A+HH+GL +E+VE LF +G V+ L +T T A G+N+PA TV+ + ++
Sbjct: 800 DILPYGFAIHHAGLSRGDREIVETLFSQGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYN 859
Score = 120 (47.3 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 42/143 (29%), Positives = 73/143 (51%)
Query: 78 DPFQ-RVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYTSPLKALS 132
+P Q +V N++VLV+A T +GKT AE+AI + RV+Y +PL+A++
Sbjct: 1352 NPVQTQVFTVLYNTNDNVLVAAPTGSGKTICAEFAILRNHHEGPDATMRVVYIAPLEAIA 1411
Query: 133 NQKYRELHQEF-KDVGL----MTG----DVTLSPNASCLVMTTEILRGMLYRGSE--VLK 181
+++R +F K +GL +TG D+ L ++ T E + R + ++
Sbjct: 1412 KEQFRIWEGKFGKGLGLRVVELTGETALDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQ 1471
Query: 182 EVAWVIFDEIHYMKDRERGVVWE 204
+V+ I DE+H + + G V E
Sbjct: 1472 QVSLFIVDELHLIGG-QHGPVLE 1493
Score = 107 (42.7 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 54/200 (27%), Positives = 87/200 (43%)
Query: 82 RVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ-----------RVIYTSPLKA 130
+V L + E++L+ A T AGKT VA I + +++Y +P+KA
Sbjct: 511 KVYDTALFKAENILLCAPTGAGKTNVAMLTILQQLEMNRNTDGTYNHGDYKIVYVAPMKA 570
Query: 131 LSNQKYRELHQEFKDVGL----MTGDVTLSPNA---SCLVMTTEILRGMLYR--GSEVLK 181
L + L KD G+ ++GD +L+ + +++TT ++ R G
Sbjct: 571 LVAEVVGNLSNRLKDYGVIVRELSGDQSLTGREIEETQIIVTTPEKWDIITRKSGDRTYT 630
Query: 182 E-VAWVIFDEIHYMKDRERGVVWEE-------SIIFLPPAIKMVFLSATMSNATQFAEWI 233
+ V +I DEIH + D RG V E I I++V LSAT+ N A ++
Sbjct: 631 QLVRLLIIDEIHLLHDN-RGPVLESIVARTLRQIETTKENIRLVGLSATLPNYEDVALFL 689
Query: 234 CHLHKQPCHVVYTDFRPTPL 253
K+ +RP PL
Sbjct: 690 RVDLKKGLFKFDRSYRPVPL 709
Score = 85 (35.0 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 43/187 (22%), Positives = 75/187 (40%)
Query: 330 QPVIVFSFSRRECEQHA---MSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIEL 386
+P IVF +R+ A M+ S +D N Q + ++ + +D E+ R E
Sbjct: 1583 KPAIVFVPTRKHVRLTAVDLMAYSHMD-NPQSPDFLLGKLEE--LDPFVEQIRE----ET 1635
Query: 387 MLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKK 446
+ L GI H GL + +E+V LF+ G ++ + + G + A VV +
Sbjct: 1636 LKETLCHGIGYLHEGLSSLDQEIVTQLFEAGRIQVCVMSSSLCWGTPLTAHLVVVMGTQY 1695
Query: 447 WDG--DSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTLKDMVLEGQFTAEH 504
+DG +SH + +QM C+I + K + E F E
Sbjct: 1696 YDGRENSHSDYPVPDLLQMMGRASRPLLDNAGKCVIFCHAPRK-EYYKKFLYEA-FPVES 1753
Query: 505 VIKNSFH 511
+++ H
Sbjct: 1754 QLQHFLH 1760
>UNIPROTKB|F1MFR1 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:DAAA02007913 EMBL:DAAA02007914
EMBL:DAAA02007915 EMBL:DAAA02007916 IPI:IPI00839892
Ensembl:ENSBTAT00000027789 Uniprot:F1MFR1
Length = 1438
Score = 133 (51.9 bits), Expect = 2.3e-10, Sum P(5) = 2.3e-10
Identities = 51/200 (25%), Positives = 86/200 (43%)
Query: 318 FKIVKMIMERKFQ-PVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNE 376
+KI +I Q P +VF +R+ +Q A + K + TVEQ Q C
Sbjct: 517 YKIASIIQTYSDQKPTLVFCATRKGVQQAASVLVK----DAKFIMTVEQK-QRLQKCAY- 570
Query: 377 EDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPA 436
++ +L + +L G+A HH+G+ +++VE F G + LF T T AMG+N+PA
Sbjct: 571 ---SIKDSKLRVDILIHGVAYHHAGMELSDRKVVEGAFTVGDIPVLFTTSTLAMGVNLPA 627
Query: 437 KTVVFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTLKDMVL 496
VV + + G + +QM +IM ++T K+ +
Sbjct: 628 HLVVIKSTMHYAGGMFEEYSETDILQMIGRAGRPQFDTTATAVIMT----RLST-KEKYI 682
Query: 497 EGQFTAEHVIKNSFHQFQYE 516
+ I++S H+ E
Sbjct: 683 Q-MLACSDTIESSLHRHLIE 701
Score = 122 (48.0 bits), Expect = 2.3e-10, Sum P(5) = 2.3e-10
Identities = 36/134 (26%), Positives = 66/134 (49%)
Query: 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ------RVIYTSPLKALSNQKYRELHQ 141
L + + ++ A T +GKT V E AI + +++Y +P+KAL +Q++ + +
Sbjct: 295 LYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWSNIKIVYMAPIKALCSQRFDDWKK 354
Query: 142 EFKDVGL----MTGDVTLSP-----NASCLVMTTEILRGML--YRGSEVLKEVAWVIFDE 190
+F +GL +TGD + +A ++ T E M +R + ++ V + DE
Sbjct: 355 KFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVHLVRLFLIDE 414
Query: 191 IHYMKDRERGVVWE 204
+H +KD RG E
Sbjct: 415 VHVVKDENRGPTLE 428
Score = 80 (33.2 bits), Expect = 2.1e-06, Sum P(5) = 2.1e-06
Identities = 29/104 (27%), Positives = 47/104 (45%)
Query: 174 YRGSEVLKEVAWVIFDEIHYMKDRERGVVWE------ESIIFLPPAI---------KMVF 218
+R + ++ V + DE+H +KD RG E +++ L PA+ + V
Sbjct: 398 WRDNSLVHLVRLFLIDEVHVVKDENRGPTLEVVVSRMKTVQILSPAVENTNSIIPMRFVA 457
Query: 219 LSATMSNATQFAEWICHLHKQP-CHVVYTDFRPTPLQHYV--FP 259
+SAT+ NA AEW+ + C + RP L+ V FP
Sbjct: 458 VSATIPNAEDIAEWLSDGERSAVCLKMDERHRPVKLRKVVLGFP 501
Score = 43 (20.2 bits), Expect = 2.3e-10, Sum P(5) = 2.3e-10
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 833 IQNECKLEVNVDEY 846
I+NECK E++ Y
Sbjct: 1405 IRNECKKEIDFSRY 1418
Score = 42 (19.8 bits), Expect = 2.3e-10, Sum P(5) = 2.3e-10
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 724 KSKMRDSQIQKFRDELKNRSRV 745
KS+ ++S I + +L+NR+ V
Sbjct: 1167 KSEGKESTISSYLSDLRNRNAV 1188
Score = 37 (18.1 bits), Expect = 2.3e-10, Sum P(5) = 2.3e-10
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 2 EESLMAGKRKAPEEDLHVTGTPEEESTKKQRN 33
E+ L G A DLHV G S++K +N
Sbjct: 101 EDDLNLGG--AGNNDLHVAGKLTCGSSQKWKN 130
>ZFIN|ZDB-GENE-061207-43 [details] [associations]
symbol:hfm1 "HFM1, ATP-dependent DNA helicase
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-061207-43 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 GO:GO:0008026
GeneTree:ENSGT00550000074822 EMBL:BX927353 EMBL:CABZ01046504
IPI:IPI00897259 ProteinModelPortal:F1QWJ0
Ensembl:ENSDART00000099851 Bgee:F1QWJ0 Uniprot:F1QWJ0
Length = 1049
Score = 126 (49.4 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 39/134 (29%), Positives = 63/134 (47%)
Query: 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ------RVIYTSPLKALSNQKYRELHQ 141
L N++ + A T +GKT + E AI + R +Y +P+KAL +Q+Y Q
Sbjct: 24 LYSNKNFVACAPTGSGKTVLFELAIVRLLIEASEPWHNVRAVYMAPIKALCSQQYDNWKQ 83
Query: 142 EFKDVGL----MTGDVTLSP-----NASCLVMTTEILRGMLYRGSE--VLKEVAWVIFDE 190
+F +GL +TGD + +A + T E M R + +L + + DE
Sbjct: 84 KFGPLGLKCKELTGDTEIDDFFEIQDAHLIFTTAEKWDSMTRRWKDNCLLTSIRLFLVDE 143
Query: 191 IHYMKDRERGVVWE 204
+H +KD+ RG E
Sbjct: 144 VHVVKDKTRGATLE 157
Score = 122 (48.0 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 43/169 (25%), Positives = 72/169 (42%)
Query: 318 FKIVKMIMERKFQ-PVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNE 376
+K+ +I Q P +VF +R+ +Q A ++K D D +++ + A L+
Sbjct: 245 YKLANIIQTYSDQKPTLVFCSTRKGVQQSASVLAK-DARFIMSIDHKQRLVKYANSLLDA 303
Query: 377 EDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPA 436
+ R+L GI HH+G+ +++ E F G + LF T T AMG+NMPA
Sbjct: 304 KLRDL---------FVYGIGYHHAGMDVSDRKITENAFTVGDLPVLFTTSTLAMGVNMPA 354
Query: 437 KTVVFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQ 485
VV + + G + + +QM +IM Q
Sbjct: 355 HLVVIKSTMHYVGGACEEYSEADLLQMIGRAGRPQFDTTATAVIMTRPQ 403
Score = 73 (30.8 bits), Expect = 6.0e-05, Sum P(3) = 6.0e-05
Identities = 38/154 (24%), Positives = 63/154 (40%)
Query: 158 NASCLVMTTEILRGMLYRGSE--VLKEVAWVIFDEIHYMKDRERGVVWE------ESIIF 209
+A + T E M R + +L + + DE+H +KD+ RG E +++ F
Sbjct: 109 DAHLIFTTAEKWDSMTRRWKDNCLLTSIRLFLVDEVHVVKDKTRGATLEVVVSRMKTMHF 168
Query: 210 LPPAI--------KMVFLSATMSNATQFAEWICHLHKQPCHVVYTD--FRPTPLQHYV-- 257
AI + V +SAT+ N +EW+ P + D RP L+ V
Sbjct: 169 YRQAINPESKASVRFVAVSATIPNIQDVSEWLSD-ESGPATCLEMDESHRPVKLRKVVLG 227
Query: 258 FPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQK 291
FP G + D ++ N ++ T+ QK
Sbjct: 228 FPCGSNQNEFKFDLSLNYKLANIIQ---TYSDQK 258
Score = 37 (18.1 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 10/53 (18%), Positives = 23/53 (43%)
Query: 479 IIMVDEQMEMNTLKDMVLEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEE 531
+I +DE + + + L ++ F + LP++ + +SK +E
Sbjct: 496 LITMDEDINIKPTETGKLMARYCVAFDTVKQFSMVTGTETLPELIEMISKAKE 548
>UNIPROTKB|E1BH78 [details] [associations]
symbol:LOC100850262 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005682 "U5
snRNP" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
CTD:23020 EMBL:DAAA02030116 IPI:IPI00695338 RefSeq:NP_001193092.1
UniGene:Bt.7486 ProteinModelPortal:E1BH78 PRIDE:E1BH78
Ensembl:ENSBTAT00000001130 GeneID:510529 KEGG:bta:510529
NextBio:20869492 Uniprot:E1BH78
Length = 2136
Score = 150 (57.9 bits), Expect = 6.2e-09, Sum P(3) = 6.2e-09
Identities = 45/150 (30%), Positives = 78/150 (52%)
Query: 320 IVKMIMERKFQ-PVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQN---AVDCLN 375
+ + IME + V+VF SR+E + A ++ + EKDT+ + + + L
Sbjct: 708 VYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCL----EKDTLGLFLREGSASTEVLR 763
Query: 376 EEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMP 435
E +EL LL G A+HH+G+ V + LVE LF + ++ L +T T A G+N+P
Sbjct: 764 TEAEQCKNLELK-DLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLP 822
Query: 436 AKTVVFTAVKKWDGDSHRY--IGSGEYIQM 463
A TV+ + + + R+ +G+ + +QM
Sbjct: 823 AHTVIIKGTQVYSPEKGRWTELGALDILQM 852
Score = 129 (50.5 bits), Expect = 3.6e-10, Sum P(3) = 3.6e-10
Identities = 46/159 (28%), Positives = 73/159 (45%)
Query: 330 QPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIE-LML 388
+PVIVF SR++ ++ +D T D Q F + C E+D +P +E L
Sbjct: 1557 KPVIVFVPSRKQTR-----LTAIDILTTCAADIQRQRF---LHC-TEKDL-IPYLEKLSD 1606
Query: 389 PLLKR----GIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAV 444
LK G+ H GL P+ + LVE LF G ++ + A+ + GLN+ A V+
Sbjct: 1607 STLKETLLNGVGYLHEGLSPLERRLVEQLFSSGAIQVVVASRSLCWGLNVAAHLVIIMDT 1666
Query: 445 KKWDGDSHRYIGSGEY--IQMSXXXXXXXXXXXXICIIM 481
+ ++G +H Y+ Y +QM C+IM
Sbjct: 1667 QYYNGKTHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIM 1705
Score = 127 (49.8 bits), Expect = 3.6e-10, Sum P(3) = 3.6e-10
Identities = 51/202 (25%), Positives = 97/202 (48%)
Query: 78 DPFQ-RVSVACLERNESVLVSAHTSAGKTAVAEYAIA-MAFRDKQ-RVIYTSPLKALSNQ 134
+P Q +V +++V V A T +GKT AE+AI M ++ + R +Y +P++AL+ Q
Sbjct: 1329 NPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQ 1388
Query: 135 KYRELHQEFKD-----VGLMTG----DVTLSPNASCLVMTTEI--LRGMLYRGSEVLKEV 183
Y + +++F+D V L+TG D+ L S +V T E + ++ + ++ +
Sbjct: 1389 VYMDWYEKFQDRLSKKVVLLTGETSTDLKLLGKGSVIVSTPEKWDILSRRWKQRKNVQNI 1448
Query: 184 AWVIFDEIHYMKDRERGVVWE---ESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQP 240
+ DE+H + E G V E + ++ I+ +S++ A+ + H
Sbjct: 1449 NLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHW--LG 1505
Query: 241 CHVVYT-----DFRPTPLQHYV 257
C T + RP PL+ ++
Sbjct: 1506 CSATSTFNFHPNVRPVPLELHI 1527
Score = 93 (37.8 bits), Expect = 6.2e-09, Sum P(3) = 6.2e-09
Identities = 46/161 (28%), Positives = 70/161 (43%)
Query: 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGL----MTGDVTLSPN----ASCLVMTTEIL 169
D ++IY +P+++L + + G+ +TGD L +V T E
Sbjct: 534 DDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKW 593
Query: 170 RGMLYRGSE--VLKEVAWVIFDEIHYMKDRERGVVWE-------ESIIFLPPAIKMVFLS 220
+ +G E + V VI DEIH + D +RG V E +I ++++ LS
Sbjct: 594 DIITRKGGERTYTQLVRLVILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLS 652
Query: 221 ATMSNATQFAEWICHLHKQPCH-VVYTD--FRPTPL-QHYV 257
AT+ N A + L P + Y D FRP PL Q YV
Sbjct: 653 ATLPNYEDVATF---LRVDPAKGLFYFDNSFRPVPLEQTYV 690
Score = 61 (26.5 bits), Expect = 9.7e-06, Sum P(3) = 9.7e-06
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 86 ACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-----------DKQRVIYTSPLKALSNQ 134
A LE +E++L+ A T AGKT VA + D ++IY +P+++L +
Sbjct: 491 AALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 550
Query: 135 KYRELHQEFKDVGLMTGDVT 154
+ G+ ++T
Sbjct: 551 MVGSFGKRLATYGITVAELT 570
Score = 38 (18.4 bits), Expect = 3.6e-10, Sum P(3) = 3.6e-10
Identities = 8/46 (17%), Positives = 24/46 (52%)
Query: 708 RCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHID 753
RC + E +I +++ + R++ +Q ++ + +R + +I+
Sbjct: 1973 RCTDKGVESVFDIMEMEDEERNALLQLSDSQIADVARFCNRYPNIE 2018
>RGD|1307995 [details] [associations]
symbol:Ascc3 "activating signal cointegrator 1 complex subunit
3" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 RGD:1307995 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 IPI:IPI01016410 UniGene:Rn.24209
Ensembl:ENSRNOT00000057016 UCSC:RGD:1307995
GeneTree:ENSGT00640000091272 ArrayExpress:F1LPQ2 Uniprot:F1LPQ2
Length = 2197
Score = 124 (48.7 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 41/121 (33%), Positives = 62/121 (51%)
Query: 343 EQHAMSMSKLDF----NTQEE-KDTV---EQVFQNAVDCLNEEDRNLPAIELMLPLLKRG 394
E+ SM+KL+ T+E+ K + EQ +N + + D NL +L L G
Sbjct: 1564 ERMLSSMTKLELIAFLATEEDPKQWLNMDEQEMENIIATVR--DSNL---KLTLAF---G 1615
Query: 395 IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRY 454
I +HH+GL ++ VE LF V+ L AT T A G+N PA V+ + +DG + RY
Sbjct: 1616 IGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRY 1675
Query: 455 I 455
+
Sbjct: 1676 V 1676
Score = 120 (47.3 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 46/147 (31%), Positives = 72/147 (48%)
Query: 73 YSFE-LDPFQRVSVACLERNE-SVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPL 128
Y+F +P Q L + +VL+ A T +GKT AE AI F + +Y +PL
Sbjct: 1323 YNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPL 1382
Query: 129 KALSNQKYRE----LHQEF-KDVGLMTGDVTLS----PNASCLVMTTEILRGML--YRGS 177
KAL ++ + + ++ K V +TGDVT A +V T E G+ ++
Sbjct: 1383 KALVRERMDDWKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNR 1442
Query: 178 EVLKEVAWVIFDEIHYMKDRERGVVWE 204
+++V +I DEIH + + ERG V E
Sbjct: 1443 SYVQQVNILIIDEIHLLGE-ERGPVLE 1468
Score = 116 (45.9 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 36/130 (27%), Positives = 62/130 (47%)
Query: 332 VIVFSFSRRECEQHAMSMSKLDFNTQEEK---DTVEQVFQNAVDCLNEEDRNLPAIELML 388
V+VF +R + AMS+ + N+ + T + +A+ + ++ RN EL
Sbjct: 719 VMVFVHARNATVRTAMSLIERAKNSGQISCFLPTQGPEYGHALKQV-QKSRNKQVRELF- 776
Query: 389 PLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448
G ++HH+G+L + LVE LF G +K L T T A G+N+PA V+ + +
Sbjct: 777 ---SDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYA 833
Query: 449 GDSHRYIGSG 458
++ G
Sbjct: 834 AKRGSFVDLG 843
Score = 90 (36.7 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 37/131 (28%), Positives = 63/131 (48%)
Query: 144 KDVGLMTGDVTLS----PNASCLVMTTEILRGML--YRGSEVLKEVAWVIFDEIHYMKDR 197
K V +TGDVT A +V T E G+ ++ +++V +I DEIH + +
Sbjct: 1403 KKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGE- 1461
Query: 198 ERGVVWEESII---FLPP----AIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP 250
ERG V E + F+ +++V LS ++NA A+W+ ++ + RP
Sbjct: 1462 ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWL-NIKQMGLFNFRPSVRP 1520
Query: 251 TPLQHYV--FP 259
PL+ ++ FP
Sbjct: 1521 VPLEVHIQGFP 1531
Score = 81 (33.6 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 25/93 (26%), Positives = 49/93 (52%)
Query: 91 NESVLVSAHTSAGKTAVAEYAIAMAFRD-------KQ---RVIYTSPLKALSNQKYRELH 140
NE++L+ A T AGKT +A + R K+ +++Y +P+KAL+ +
Sbjct: 493 NENMLICAPTGAGKTNIAMLTVLHEIRQHFHQGVLKKNEFKIVYVAPMKALAAEMTNYFS 552
Query: 141 QEFKDVGL----MTGDVTLSPNASCLVMTTEIL 169
+ + +G+ +TGD+ LS + ++ T++L
Sbjct: 553 KRLEPLGIVVKELTGDMQLSKSE---ILRTQML 582
>SGD|S000003503 [details] [associations]
symbol:SLH1 "Putative RNA helicase related to Ski2p"
species:4932 "Saccharomyces cerevisiae" [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA;IGI;IMP] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042788 "polysomal ribosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0002181
"cytoplasmic translation" evidence=IGI] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 SGD:S000003503 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 EMBL:BK006941 GO:GO:0003676 GO:GO:0051607
GO:GO:0002181 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K01529 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003724 KO:K02201
RefSeq:NP_011793.3 GeneID:853194 KEGG:sce:YGR277C OMA:RKPTGEG
OrthoDB:EOG4H75KM RefSeq:NP_011787.4 GeneID:853187 KEGG:sce:YGR271W
EMBL:U35242 EMBL:Z73056 PIR:S64604 DIP:DIP-5563N IntAct:P53327
MINT:MINT-516762 STRING:P53327 PaxDb:P53327 PeptideAtlas:P53327
EnsemblFungi:YGR271W CYGD:YGR271w NextBio:973332
Genevestigator:P53327 GermOnline:YGR271W Uniprot:P53327
Length = 1967
Score = 137 (53.3 bits), Expect = 2.8e-07, Sum P(4) = 2.8e-07
Identities = 42/151 (27%), Positives = 76/151 (50%)
Query: 319 KIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQE----EKDTVEQVFQNAVDCL 374
K+ +MI +R +Q V+VF SR+E + A + KL + E D +E+ + + +
Sbjct: 524 KLSEMI-QRGYQ-VMVFVHSRKETVKSARNFIKLAESNHEVDLFAPDPIEKD-KYSRSLV 580
Query: 375 NEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNM 434
D+++ I + G +HH+G+ + L E +F++G +K L T T A G+N+
Sbjct: 581 KNRDKDMKEI------FQFGFGIHHAGMARSDRNLTEKMFKDGAIKVLCCTATLAWGVNL 634
Query: 435 PAKTVVFTAVKKWDGDSHRYI--GSGEYIQM 463
PA V+ + +D +I G + IQ+
Sbjct: 635 PADCVIIKGTQVYDSKKGGFIDLGISDVIQI 665
Score = 133 (51.9 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 43/147 (29%), Positives = 79/147 (53%)
Query: 73 YSFE-LDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPL 128
Y F+ +P Q ++ L NE+ V + T +GKT VAE AI AF+ ++++Y +P+
Sbjct: 1135 YPFKYFNPMQTMTFYTLYNTNENAFVGSPTGSGKTIVAELAIWHAFKTFPGKKIVYIAPM 1194
Query: 129 KALSNQKYRELHQEFKDV-G----LMTGDVTLSP----NASCLVMTTEILRGML--YRGS 177
KAL ++ + ++ V G +TGD P +A+ ++ T E G+ ++
Sbjct: 1195 KALVRERVDDWRKKITPVTGDKVVELTGDSLPDPKDVHDATIVITTPEKFDGISRNWQTR 1254
Query: 178 EVLKEVAWVIFDEIHYMKDRERGVVWE 204
+ +++V+ +I DEIH + +RG + E
Sbjct: 1255 KFVQDVSLIIMDEIHLLAS-DRGPILE 1280
Score = 120 (47.3 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 45/176 (25%), Positives = 78/176 (44%)
Query: 317 IFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNE 376
+F +K K P ++F SRR+ A+ + L +D + F N +D E
Sbjct: 1359 VFMAIKQHSPDK--PALIFVASRRQTRLTALDLIHLC----GMEDNPRR-FLN-IDDEEE 1410
Query: 377 EDRNLPAI-ELMLPL-LKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNM 434
L + + L L L+ GI +HH+GL+ + + LFQ+ ++ L AT T A G+N+
Sbjct: 1411 LQYYLSQVTDDTLKLSLQFGIGLHHAGLVQKDRSISHQLFQKNKIQILIATSTLAWGVNL 1470
Query: 435 PAKTVVFTAVKKWDG--DSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEM 488
PA V+ + +D + +R + + +QM I+ E +M
Sbjct: 1471 PAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTTGTAIVYTKESKKM 1526
Score = 81 (33.6 bits), Expect = 3.9e-06, Sum P(4) = 3.9e-06
Identities = 30/126 (23%), Positives = 61/126 (48%)
Query: 149 MTGDVTLSP----NASCLVMTTEILRGML--YRGSEVLKEVAWVIFDEIHYMKDRERGVV 202
+TGD P +A+ ++ T E G+ ++ + +++V+ +I DEIH + +RG +
Sbjct: 1220 LTGDSLPDPKDVHDATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEIHLLAS-DRGPI 1278
Query: 203 WEESIIFL-------PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQH 255
E + + ++++ +S +SNA A W+ + + + RP PL+
Sbjct: 1279 LEMIVSRMNYISSQTKQPVRLLGMSTAVSNAYDMAGWL-GVKDHGLYNFPSSVRPVPLKM 1337
Query: 256 YV--FP 259
Y+ FP
Sbjct: 1338 YIDGFP 1343
Score = 75 (31.5 bits), Expect = 2.8e-07, Sum P(4) = 2.8e-07
Identities = 32/130 (24%), Positives = 66/130 (50%)
Query: 149 MTGDVTLSPN---ASCLVMTT----EILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGV 201
+TGD+ L+ A+ +++TT +++ ++++ +V +I DE+H + + +RG
Sbjct: 380 LTGDMQLTKAEILATQVIVTTPEKWDVVTRKANGDNDLVSKVKLLIIDEVHLLHE-DRGS 438
Query: 202 VWE-------ESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTD--FRPTP 252
V E + I+++ LSAT+ N A+++ +++Q + Y D FRP P
Sbjct: 439 VIETLVARTLRQVESSQSMIRIIGLSATLPNFMDVADFL-GVNRQ-IGMFYFDQSFRPKP 496
Query: 253 LQHYVFPVGG 262
L+ + G
Sbjct: 497 LEQQLLGCRG 506
Score = 59 (25.8 bits), Expect = 2.8e-07, Sum P(4) = 2.8e-07
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 91 NESVLVSAHTSAGKTAVAEYAIAMAFR---------------DKQRVIYTSPLKALSNQK 135
NE++L+ A T AGKT +A I + D +VIY +PLKAL+ +
Sbjct: 303 NENMLICAPTGAGKTDIALLTIINTIKQFSVVNGENEIDIQYDDFKVIYVAPLKALAAEI 362
Query: 136 YRELHQEFKDVGLMTGDVT 154
+ ++ + ++T
Sbjct: 363 VDKFSKKLAPFNIQVRELT 381
Score = 38 (18.4 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 22/97 (22%), Positives = 42/97 (43%)
Query: 755 DGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLR- 813
D ++ + C++ GD+++ T + ++ + H + L D ++ Q LR
Sbjct: 1605 DSTLENLRESQCVLLHGDDIVATPFLSISSYYYISHLTIRQLLKQIH--DHATFQEVLRW 1662
Query: 814 MELAKPLQQLQESARKIAEIQNECKLEVNVDEYVEST 850
+ LA +L +I I NE ++ VEST
Sbjct: 1663 LSLAVEYNELPVRGGEI--IMNE-EMSQQSRYSVEST 1696
>GENEDB_PFALCIPARUM|PFD1060w [details] [associations]
symbol:PFD1060w "u5 small nuclear
ribonucleoprotein-specific protein, putative" species:5833
"Plasmodium falciparum" [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005681
GO:GO:0003676 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 GO:GO:0004004 KO:K01509
RefSeq:XP_001351528.1 ProteinModelPortal:Q8IFP1 IntAct:Q8IFP1
MINT:MINT-1569750 PRIDE:Q8IFP1 EnsemblProtists:PFD1060w:mRNA
GeneID:812456 KEGG:pfa:PFD1060w EuPathDB:PlasmoDB:PF3D7_0422500
ProtClustDB:CLSZ2515128 Uniprot:Q8IFP1
Length = 2874
Score = 127 (49.8 bits), Expect = 5.6e-10, Sum P(3) = 5.6e-10
Identities = 46/156 (29%), Positives = 83/156 (53%)
Query: 76 ELDPFQ-RV-SVACLERNESVLVSAHTSAGKTAVA---------EYAIAMAFRDKQ--RV 122
+L+P Q +V VA + E++L+ A T +GKT +A Y + +++ ++
Sbjct: 714 KLNPIQSKVYDVAFNKYEENMLICAPTGSGKTNIALLCILNVINSYRLTSGNINRKDFKI 773
Query: 123 IYTSPLKALSNQKYRELHQEFKDVGL----MTGDVTLSP----NASCLVMTTEILRGMLY 174
+Y SP+KAL N++ + + K + + +TGDV LS ++ +VMT E +
Sbjct: 774 VYISPMKALVNEQVQSFNLRLKCMNIKVSELTGDVNLSTKELDDSQIIVMTPEKFDVISR 833
Query: 175 RGSE--VLKEVAWVIFDEIHYMKDRERGVVWEESII 208
+ +E +L ++ +IFDEIH + + V+ ESII
Sbjct: 834 KWNEKILLHKIKLIIFDEIHLLNEMRGNVL--ESII 867
Score = 123 (48.4 bits), Expect = 5.6e-10, Sum P(3) = 5.6e-10
Identities = 36/146 (24%), Positives = 75/146 (51%)
Query: 322 KMIMERKFQPVIVFSFSRRECEQHA-MSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRN 380
K++ E +++F SR+E + + + + + + K +++ + + L+E++
Sbjct: 1032 KVLEEAGKNQILIFVHSRKETYRTSKLLIDRFMKSDNLSKFLIDKKISSEI-LLSEKEHV 1090
Query: 381 LPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440
+ E + +L G +HH+GL + ++LVE LF + ++ L T T A G+N+PA TV+
Sbjct: 1091 IN--EELKEILPFGFGIHHAGLKRLDRKLVEDLFSDRHIQVLVCTSTLAWGINLPAHTVI 1148
Query: 441 FTAVKKWD---GDSHRYIGSGEYIQM 463
++ GD + S + +QM
Sbjct: 1149 IKGTSVYNINIGDFDE-LSSMDVLQM 1173
Score = 78 (32.5 bits), Expect = 1.5e-05, Sum P(5) = 1.5e-05
Identities = 14/56 (25%), Positives = 32/56 (57%)
Query: 385 ELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440
+++ +K+GI H+ + + K++VE+LF + ++ L + + LN+ A V+
Sbjct: 2297 KMLRQFMKKGICYLHNNMTEIEKKIVEILFDKKTIQILIVSYDYIYSLNVYANNVI 2352
Score = 48 (22.0 bits), Expect = 1.5e-05, Sum P(5) = 1.5e-05
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 220 SATMSNATQFAEWI-CHLHKQPCHVVYTDFRPTPLQHYVFPV 260
S ++ N+ FAEWI C K + + R P++ Y+ V
Sbjct: 2029 SCSLYNSKDFAEWIGCK--KNDYYNFLSTVRDIPIEIYLHAV 2068
Score = 46 (21.3 bits), Expect = 5.6e-10, Sum P(3) = 5.6e-10
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 666 LNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDE--NQIRCFQRKAEVNHEIQQL 723
+ D++I D V DL+N +E L H K + E N F EV +EI
Sbjct: 2712 IKKANDLEILD--VYDLINAEDEPRDILLKHLNEKQRSEIANVCNIFPI-IEVQYEIDLD 2768
Query: 724 KS 725
KS
Sbjct: 2769 KS 2770
Score = 45 (20.9 bits), Expect = 7.1e-10, Sum P(3) = 7.1e-10
Identities = 10/53 (18%), Positives = 29/53 (54%)
Query: 681 DLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 733
+ ++ + ++ +++ H +N +N+ QR +V I++LK+ + ++Q
Sbjct: 2051 NFLSTVRDIPIEIYLHAVNIMNKQNRYISMQR--QVYQNIRKLKNIPKKKKMQ 2101
Score = 43 (20.2 bits), Expect = 1.5e-05, Sum P(5) = 1.5e-05
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 316 DIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFN 355
+I K+ + ++K Q VI+F ++ C+ A+ + +N
Sbjct: 2087 NIRKLKNIPKKKKMQNVIIFVTDQKLCKTLALDLILSAYN 2126
>UNIPROTKB|Q8IFP1 [details] [associations]
symbol:PFD1060w "U5 small nuclear
ribonucleoprotein-specific protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005681
GO:GO:0003676 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 GO:GO:0004004 KO:K01509
RefSeq:XP_001351528.1 ProteinModelPortal:Q8IFP1 IntAct:Q8IFP1
MINT:MINT-1569750 PRIDE:Q8IFP1 EnsemblProtists:PFD1060w:mRNA
GeneID:812456 KEGG:pfa:PFD1060w EuPathDB:PlasmoDB:PF3D7_0422500
ProtClustDB:CLSZ2515128 Uniprot:Q8IFP1
Length = 2874
Score = 127 (49.8 bits), Expect = 5.6e-10, Sum P(3) = 5.6e-10
Identities = 46/156 (29%), Positives = 83/156 (53%)
Query: 76 ELDPFQ-RV-SVACLERNESVLVSAHTSAGKTAVA---------EYAIAMAFRDKQ--RV 122
+L+P Q +V VA + E++L+ A T +GKT +A Y + +++ ++
Sbjct: 714 KLNPIQSKVYDVAFNKYEENMLICAPTGSGKTNIALLCILNVINSYRLTSGNINRKDFKI 773
Query: 123 IYTSPLKALSNQKYRELHQEFKDVGL----MTGDVTLSP----NASCLVMTTEILRGMLY 174
+Y SP+KAL N++ + + K + + +TGDV LS ++ +VMT E +
Sbjct: 774 VYISPMKALVNEQVQSFNLRLKCMNIKVSELTGDVNLSTKELDDSQIIVMTPEKFDVISR 833
Query: 175 RGSE--VLKEVAWVIFDEIHYMKDRERGVVWEESII 208
+ +E +L ++ +IFDEIH + + V+ ESII
Sbjct: 834 KWNEKILLHKIKLIIFDEIHLLNEMRGNVL--ESII 867
Score = 123 (48.4 bits), Expect = 5.6e-10, Sum P(3) = 5.6e-10
Identities = 36/146 (24%), Positives = 75/146 (51%)
Query: 322 KMIMERKFQPVIVFSFSRRECEQHA-MSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRN 380
K++ E +++F SR+E + + + + + + K +++ + + L+E++
Sbjct: 1032 KVLEEAGKNQILIFVHSRKETYRTSKLLIDRFMKSDNLSKFLIDKKISSEI-LLSEKEHV 1090
Query: 381 LPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440
+ E + +L G +HH+GL + ++LVE LF + ++ L T T A G+N+PA TV+
Sbjct: 1091 IN--EELKEILPFGFGIHHAGLKRLDRKLVEDLFSDRHIQVLVCTSTLAWGINLPAHTVI 1148
Query: 441 FTAVKKWD---GDSHRYIGSGEYIQM 463
++ GD + S + +QM
Sbjct: 1149 IKGTSVYNINIGDFDE-LSSMDVLQM 1173
Score = 78 (32.5 bits), Expect = 1.5e-05, Sum P(5) = 1.5e-05
Identities = 14/56 (25%), Positives = 32/56 (57%)
Query: 385 ELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440
+++ +K+GI H+ + + K++VE+LF + ++ L + + LN+ A V+
Sbjct: 2297 KMLRQFMKKGICYLHNNMTEIEKKIVEILFDKKTIQILIVSYDYIYSLNVYANNVI 2352
Score = 48 (22.0 bits), Expect = 1.5e-05, Sum P(5) = 1.5e-05
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 220 SATMSNATQFAEWI-CHLHKQPCHVVYTDFRPTPLQHYVFPV 260
S ++ N+ FAEWI C K + + R P++ Y+ V
Sbjct: 2029 SCSLYNSKDFAEWIGCK--KNDYYNFLSTVRDIPIEIYLHAV 2068
Score = 46 (21.3 bits), Expect = 5.6e-10, Sum P(3) = 5.6e-10
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 666 LNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDE--NQIRCFQRKAEVNHEIQQL 723
+ D++I D V DL+N +E L H K + E N F EV +EI
Sbjct: 2712 IKKANDLEILD--VYDLINAEDEPRDILLKHLNEKQRSEIANVCNIFPI-IEVQYEIDLD 2768
Query: 724 KS 725
KS
Sbjct: 2769 KS 2770
Score = 45 (20.9 bits), Expect = 7.1e-10, Sum P(3) = 7.1e-10
Identities = 10/53 (18%), Positives = 29/53 (54%)
Query: 681 DLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 733
+ ++ + ++ +++ H +N +N+ QR +V I++LK+ + ++Q
Sbjct: 2051 NFLSTVRDIPIEIYLHAVNIMNKQNRYISMQR--QVYQNIRKLKNIPKKKKMQ 2101
Score = 43 (20.2 bits), Expect = 1.5e-05, Sum P(5) = 1.5e-05
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 316 DIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFN 355
+I K+ + ++K Q VI+F ++ C+ A+ + +N
Sbjct: 2087 NIRKLKNIPKKKKMQNVIIFVTDQKLCKTLALDLILSAYN 2126
>UNIPROTKB|A6NGI5 [details] [associations]
symbol:HFM1 "Probable ATP-dependent DNA helicase HFM1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00973
GO:GO:0008026 EMBL:BX323048 EMBL:AC098691 HGNC:HGNC:20193
HOGENOM:HOG000293238 HOVERGEN:HBG103774 ChiTaRS:HFM1
IPI:IPI00852573 ProteinModelPortal:A6NGI5 STRING:A6NGI5
Ensembl:ENST00000370424 ArrayExpress:A6NGI5 Bgee:A6NGI5
Uniprot:A6NGI5
Length = 1114
Score = 127 (49.8 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 50/186 (26%), Positives = 83/186 (44%)
Query: 317 IFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSK-LDF-NTQEEKDTVEQVFQNAVDCL 374
I +++M ++K P +VF +R+ +Q A + K F T E+K +++ + +V
Sbjct: 196 IASVIQMYSDQK--PTLVFCATRKGVQQAASVLVKDAKFIMTVEQKQRLQK-YAYSV--- 249
Query: 375 NEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNM 434
D L I LK G A HH+G+ +++VE F G + LF T T AMG+N+
Sbjct: 250 --RDSKLRDI------LKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNL 301
Query: 435 PAKTVVFTAVKKWDGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMV-----DEQMEMN 489
PA VV + + G + +QM +IM D+ ++M
Sbjct: 302 PAHLVVIKSTMHYAGGLFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTRDKYIQML 361
Query: 490 TLKDMV 495
+D V
Sbjct: 362 ACRDTV 367
Score = 106 (42.4 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 30/118 (25%), Positives = 61/118 (51%)
Query: 121 RVIYTSPLKALSNQKYRELHQEFKDVGL----MTGDVTLSP-----NASCLVMTTEILRG 171
+++Y +P+KAL +Q++ + ++F +GL +TGD + +A ++ T E
Sbjct: 11 KIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDS 70
Query: 172 ML--YRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNAT 227
M +R + +++ V + DE+H +KD RG E ++ ++ V S T+ N +
Sbjct: 71 MTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLEV-VVSRMKTVQSV--SQTLKNTS 125
Score = 75 (31.5 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 30/104 (28%), Positives = 46/104 (44%)
Query: 174 YRGSEVLKEVAWVIFDEIHYMKDRERGVVWE-------------ESIIFLPPAIKMVFL- 219
+R + +++ V + DE+H +KD RG E +++ AI M F+
Sbjct: 75 WRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTAIPMRFVA 134
Query: 220 -SATMSNATQFAEWICHLHKQP-CHVVYTDFRPTPLQHYV--FP 259
SAT+ NA AEW+ + C + RP LQ V FP
Sbjct: 135 VSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVVLGFP 178
Score = 46 (21.3 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 724 KSKMRDSQIQKFRDELKNRSRV 745
KS++++S I + +L+NR+ V
Sbjct: 844 KSEIKESTISSYLSDLRNRNAV 865
>TAIR|locus:2059969 [details] [associations]
symbol:AT2G42270 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0009506 GO:GO:0005524 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003676 EMBL:AC002561 GO:GO:0030529
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 UniGene:At.12448 UniGene:At.43726 KO:K12854
OMA:RDTHESS GO:GO:0008026 IPI:IPI00539463 PIR:T00936
RefSeq:NP_181756.1 ProteinModelPortal:O48534 SMR:O48534
STRING:O48534 PaxDb:O48534 PRIDE:O48534 EnsemblPlants:AT2G42270.1
GeneID:818828 KEGG:ath:AT2G42270 TAIR:At2g42270 InParanoid:O48534
PhylomeDB:O48534 ProtClustDB:CLSN2679454 ArrayExpress:O48534
Genevestigator:O48534 Uniprot:O48534
Length = 2172
Score = 121 (47.7 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 39/137 (28%), Positives = 70/137 (51%)
Query: 332 VIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIEL----M 387
V++F SR+E + A ++ +T DT+ + + D + E A L +
Sbjct: 746 VLIFVHSRKETAKTARAIR----DTAMANDTLSRFLKE--DSQSREILKCLAGLLKNNDL 799
Query: 388 LPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKW 447
LL G A+HH+GL +E+VE F+ G ++ L +T T A G+N+PA TV+ + +
Sbjct: 800 KELLPYGFAIHHAGLTRTDREIVENQFRWGNLQVLISTATLAWGVNLPAHTVIIKGTQVY 859
Query: 448 DGDSHRYIGSGEYIQMS 464
+ + GE++++S
Sbjct: 860 NPER------GEWMELS 870
Score = 120 (47.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 40/147 (27%), Positives = 76/147 (51%)
Query: 62 NPVYNGEMAKTYSFELDPFQ-RVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD-- 118
NP Y + + + +P Q +V +++V+V+A T +GKT AE+AI +
Sbjct: 1339 NPSYE-TLYQDFK-HFNPVQTQVFTVLYNTSDNVVVAAPTGSGKTICAEFAILRNHLEGP 1396
Query: 119 --KQRVIYTSPLKALSNQKYRELHQEF-KDVGL----MTG----DVTLSPNASCLVMTTE 167
RV+Y +PL+A++ +++R+ ++F K +GL +TG D+ L ++ T E
Sbjct: 1397 DSAMRVVYIAPLEAIAKEQFRDWEKKFGKGLGLRVVELTGETLLDLKLLEKGQIIISTPE 1456
Query: 168 ILRGMLYRGSE--VLKEVAWVIFDEIH 192
+ R + +++V+ I DE+H
Sbjct: 1457 KWDALSRRWKQRKYIQQVSLFIVDELH 1483
Score = 117 (46.2 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 55/200 (27%), Positives = 90/200 (45%)
Query: 82 RVSVACLERNESVLVSAHTSAGKTAVA------EYAIAM----AFRD-KQRVIYTSPLKA 130
+V L + +++L+ A T AGKT VA + + M F +++Y +P+KA
Sbjct: 512 KVYGTALFKADNILLCAPTGAGKTNVAVLTILHQLGLNMNPGGTFNHGNYKIVYVAPMKA 571
Query: 131 LSNQKYRELHQEFKDVGL----MTGDVTLSPNA---SCLVMTTEILRGMLYR--GSEVLK 181
L + L Q KD G+ ++GD +L+ + +++TT ++ R G
Sbjct: 572 LVAEVVDSLSQRLKDFGVTVKELSGDQSLTGQEIKETQIIVTTPEKWDIITRKSGDRTYT 631
Query: 182 E-VAWVIFDEIHYMKDRERGVVWEE-------SIIFLPPAIKMVFLSATMSNATQFAEWI 233
+ V +I DEIH + D RG V E I I++V LSAT+ N A ++
Sbjct: 632 QLVRLLIIDEIHLLDDN-RGPVLESIVARTLRQIESTKEHIRLVGLSATLPNCDDVASFL 690
Query: 234 CHLHKQPCHVVYTDFRPTPL 253
K + +RP PL
Sbjct: 691 RVDLKNGLFIFDRSYRPVPL 710
Score = 80 (33.2 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 35/155 (22%), Positives = 63/155 (40%)
Query: 330 QPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAI--ELM 387
+P IVF +R+ A+ + + ++ + + + + N L E + L I E +
Sbjct: 1584 KPAIVFVPTRKHVRLTAVDL--IAYSHMDNMKSPDFLLGN----LEELEPFLIQICEETL 1637
Query: 388 LPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKW 447
L+ GI H GL + +E+V LF+ G ++ + + G + A VV +
Sbjct: 1638 KETLRHGIGYLHEGLSNLDQEIVTQLFEAGRIQVCVMSSSLCWGTPLKAHLVVVMGTHFY 1697
Query: 448 DG--DSHRYIGSGEYIQMSXXXXXXXXXXXXICII 480
DG +SH +QM C+I
Sbjct: 1698 DGRENSHSDYPISNLLQMMGRGSRPLLDDAGKCVI 1732
>DICTYBASE|DDB_G0279107 [details] [associations]
symbol:DDB_G0279107 "Helicase POLQ-like"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0279107 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000027 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG1204 SUPFAM:SSF47794 GO:GO:0008026 RefSeq:XP_641869.1
ProteinModelPortal:Q54X98 EnsemblProtists:DDB0205039 GeneID:8621875
KEGG:ddi:DDB_G0279107 InParanoid:Q54X98 OMA:LTNDERE
ProtClustDB:CLSZ2430718 Uniprot:Q54X98
Length = 1238
Score = 130 (50.8 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 72/297 (24%), Positives = 129/297 (43%)
Query: 12 APEEDLHVTGTPEEESTKKQRNLTRSCVHEVAVPSGYALTKD--EAIHGTFANPVYNGEM 69
+P + L + +++ K++ + +++ + ++ D E F P G +
Sbjct: 388 SPSKSLVINKNNQQQQQKQKEQ--QKIEYKIICDNPKLISNDIEECCVKIFGLPKSVGTI 445
Query: 70 AKTYSF-ELDPFQR--VSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK-QRVIYT 125
K +L +Q+ +S + L E+++ S TS GKT VAE + K ++ ++
Sbjct: 446 YKRRGMKQLYDWQKECLSDSNLLLGENLIYSLPTSGGKTLVAEIILFRNLLIKNKKSLFI 505
Query: 126 SPLKALSNQKYRELHQEFKDV------GL--MTGDVTLSPNASCLVMTTE---ILRGMLY 174
P ++ +K +H EF G G + + P L+ T E I+ L
Sbjct: 506 FPFVSIVCEKTESMH-EFSSALQIPVEGYHGCNGTIPVLPGKRLLICTIEKANIIVNQLI 564
Query: 175 RGSEVLKEVAWVIFDEIHYMKDRERGVVWE---ESIIFLPPA-IKMVFLSATMSNATQFA 230
+L ++ V+ DEIH + D ERG + E ++++ I+++ +SAT+ N
Sbjct: 565 EDGRLL-DIGCVVVDEIHMIGDGERGQLLEVLISKLLYMSKGQIQIIGMSATIPNIDNLQ 623
Query: 231 EWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVK-LQDT 286
+W V FRP PL Y+ +G LY D +E+N VK LQ T
Sbjct: 624 KWFRG------GVYQGTFRPVPLTEYI-KIGDK-LY---D-----KENNLVKSLQGT 664
Score = 101 (40.6 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 31/115 (26%), Positives = 61/115 (53%)
Query: 332 VIVFSFSRRECEQHAMSMSK------LDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIE 385
V++F S+ A+ ++K LD N ++E++ + Q+ +++ C EED
Sbjct: 684 VLIFCASKLLTVSLALQLAKSFPQAILD-NRRDEREILIQLIESSNGCKVEED------- 735
Query: 386 LMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440
++ G+A H++ L +E++E F+E + L AT T + G+N+PA+ V+
Sbjct: 736 -FKRMIMAGVAYHNADLTNDEREVIERGFKERSLLVLCATSTLSTGVNLPARRVI 789
Score = 47 (21.6 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 858 VIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQL 896
+I+C SK T + +Q+ F +I+ + R E L QL
Sbjct: 685 LIFCASKLLTVSLALQLAKSFPQAILDNRRDEREILIQL 723
>FB|FBgn0263599 [details] [associations]
symbol:l(3)72Ab "lethal (3) 72Ab" species:7227 "Drosophila
melanogaster" [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS] [GO:0005682 "U5 snRNP" evidence=ISS] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0007067 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR
GO:GO:0004004 GO:GO:0000381 EMBL:BT016121 EMBL:AY069270
RefSeq:NP_648818.3 UniGene:Dm.973 ProteinModelPortal:Q9VUV9
SMR:Q9VUV9 IntAct:Q9VUV9 STRING:Q9VUV9 PaxDb:Q9VUV9 PRIDE:Q9VUV9
EnsemblMetazoa:FBtr0075527 GeneID:39737 KEGG:dme:Dmel_CG5931
FlyBase:FBgn0036548 InParanoid:Q9VUV9 OrthoDB:EOG4S4MWW
PhylomeDB:Q9VUV9 GenomeRNAi:39737 NextBio:815125 Bgee:Q9VUV9
GermOnline:CG5931 Uniprot:Q9VUV9
Length = 2142
Score = 142 (55.0 bits), Expect = 2.4e-09, Sum P(6) = 2.4e-09
Identities = 38/127 (29%), Positives = 68/127 (53%)
Query: 332 VIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQN---AVDCLNEEDRNLPAIELML 388
V+VF SR+E + A ++ + E+DT+ + +++ L E + EL
Sbjct: 721 VLVFVHSRKETGKTARAVRDMCL----EQDTLGSFLKEGSASMEVLRTEAEQVKNTELK- 775
Query: 389 PLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448
LL G A+HH+G+ V + LVE LF + ++ L +T T A G+N+PA TV+ + ++
Sbjct: 776 ELLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYN 835
Query: 449 GDSHRYI 455
+ R++
Sbjct: 836 PEKGRWV 842
Score = 103 (41.3 bits), Expect = 4.7e-05, Sum P(4) = 4.7e-05
Identities = 48/203 (23%), Positives = 77/203 (37%)
Query: 330 QPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLP 389
+PVIVF SR++ ++ +D T D F +A EED P +E M
Sbjct: 1556 KPVIVFVSSRKQAR-----LTAIDVLTYAASDLQPNRFFHA----EEEDIK-PFLERMTD 1605
Query: 390 -----LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAV 444
L +G+A H GL LVE LF G V+ + G+++ A V+
Sbjct: 1606 KTLKETLAQGVAYLHEGLSASDHRLVEQLFDSGAVQVAVISRDLCWGMSISAHLVIIMDT 1665
Query: 445 KKWDGDSHRY--IGSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTLKDMVLEGQFTA 502
+ ++G +H Y + +QM C++M + + + K + E
Sbjct: 1666 QFYNGKNHSYEDYPITDVLQMIGRANRPNEDADAKCVLMC-QSSKKDFFKKFINEPLPIE 1724
Query: 503 EHVIKNSFHQFQYEKALPDIGKK 525
H+ F E I K
Sbjct: 1725 SHLDHRMHDHFNAEVVTKTIENK 1747
Score = 92 (37.4 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 42/143 (29%), Positives = 67/143 (46%)
Query: 76 ELDPFQ-RVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ--RVIYTSPLKALS 132
+ +P Q +V A +E+V V A T +GK +AE+AI F + R +Y +AL+
Sbjct: 1327 QFNPIQTQVFNAVYNSDENVFVGAPTGSGKMTIAEFAIMRLFTTQSDARCVYLVSEEALA 1386
Query: 133 NQKYRELHQEFKDVGL----MTG----DVTLSPNASCLVMTTEILRGMLYRGSEVLKEVA 184
+ + + H +F + + +TG D+ L LV+TT +L R + K V
Sbjct: 1387 DLVFADWHSKFGSLDIKVVKLTGETGTDLKLIAKGQ-LVITTADKWDVLSRRWKQRKNVQ 1445
Query: 185 WV---IFDEIHYMKDRERGVVWE 204
V I DE+ + E G V E
Sbjct: 1446 LVNLFIVDELQLVGGEE-GPVLE 1467
Score = 83 (34.3 bits), Expect = 2.4e-09, Sum P(6) = 2.4e-09
Identities = 46/157 (29%), Positives = 69/157 (43%)
Query: 121 RVIYTSPLKALSNQKY----RELHQEFKDVGLMTGDVTLSPN----ASCLVMTTEILRGM 172
++IY +P+K+L + R L V +TGD L+ +V T E +
Sbjct: 537 KIIYVAPMKSLVQEMVGNFGRRLACYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDII 596
Query: 173 LYRGSE--VLKEVAWVIFDEIHYMKDRERGVVWE-------ESIIFLPPAIKMVFLSATM 223
+G E + V VI DEIH + D ERG V E +I +++V LSAT+
Sbjct: 597 TRKGGERTFVSLVRLVIIDEIHLLHD-ERGPVLEALVARTIRNIETTQEEVRLVGLSATL 655
Query: 224 SNATQFAEWICHLHKQPCHVVYTD--FRPTPL-QHYV 257
N A ++ K + Y D +RP L Q Y+
Sbjct: 656 PNYQDVATFL--RVKPDKGLFYFDNSYRPVSLEQQYI 690
Score = 60 (26.2 bits), Expect = 2.4e-09, Sum P(6) = 2.4e-09
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 60 FANPVYNGEMAKTYSFELDPFQ-RVSVACLERNESVLVSAHTSAGKTAVA 108
+ PV+ G KT L+ Q R+ A L+ +E++L+ A T AGKT VA
Sbjct: 470 YVQPVFEG--FKT----LNRIQSRLYKAALDSDENMLLCAPTGAGKTNVA 513
Score = 44 (20.5 bits), Expect = 2.4e-09, Sum P(6) = 2.4e-09
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 689 LEHKLFAHPLNKSQDENQIRCF 710
L H+ F SQDE+Q++ F
Sbjct: 1234 LHHEFFLLKQKYSQDEHQLKFF 1255
Score = 44 (20.5 bits), Expect = 2.4e-09, Sum P(6) = 2.4e-09
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 624 LISTLSKIRL----SVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEV 679
L TLS+I L S+ + R + R+ L +Q+L R P P+K+ E
Sbjct: 1005 LKQTLSEIELFRVFSLSSEFRHISVREEEKLELQKLMERVPI------PIKESIEEHSAK 1058
Query: 680 VDLVNQ--IEELEHKLFA 695
V+++ Q I +L+ + FA
Sbjct: 1059 VNVLLQAYISQLKLEGFA 1076
Score = 43 (20.2 bits), Expect = 2.4e-09, Sum P(6) = 2.4e-09
Identities = 13/56 (23%), Positives = 28/56 (50%)
Query: 708 RCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGR 763
RC ++K E +I +L+ + R +Q ++ + +R + +I+ + V K R
Sbjct: 1977 RCTEKKIETVFDIMELEDEDRTRLLQLSDLQMADVARFCNRYPNIELNYEVVDKDR 2032
Score = 43 (20.2 bits), Expect = 5.3e-09, Sum P(5) = 5.3e-09
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 634 SVPP----DLRPLDARQSILLAVQELESRFPQGLPKLNPVK 670
++PP DL+PL L + ES + Q P+ NP++
Sbjct: 1295 NMPPTELLDLQPLPISA---LRQPKFESFYSQRFPQFNPIQ 1332
>ASPGD|ASPL0000051297 [details] [associations]
symbol:AN10194 species:162425 "Emericella nidulans"
[GO:0000393 "spliceosomal conformational changes to generate
catalytic conformation" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:BN001307
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
GO:GO:0046540 GO:GO:0000388 GO:GO:0008026
EnsemblFungi:CADANIAT00008099 OMA:AMNEACY Uniprot:C8VMF3
Length = 2208
Score = 130 (50.8 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 35/142 (24%), Positives = 74/142 (52%)
Query: 319 KIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQN-----AVDC 373
K+++ + + + Q +++F SR+E + A + + E +T+ Q+ ++ A+
Sbjct: 764 KVIEHVGQNRNQ-MLIFVHSRKETAKTAKYLR----DKALEMETIGQILKSDSASRAILA 818
Query: 374 LNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLN 433
E N A++ +LP G +HH+GL ++ V+ LF++G ++ L T T A G+N
Sbjct: 819 EEAESVNDAALKDILPY---GFGIHHAGLSLADRDSVQALFKDGSIQVLVCTATLAWGVN 875
Query: 434 MPAKTVVFTAVKKWDGDSHRYI 455
+PA TV+ + + + ++
Sbjct: 876 LPAHTVIIKGTQVYSPEKGSWV 897
Score = 114 (45.2 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 61/213 (28%), Positives = 95/213 (44%)
Query: 76 ELDPFQ-RVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF---RDKQ---------RV 122
EL+ Q + + + + ++LV A T +GKT VA +I R+ Q ++
Sbjct: 532 ELNRIQTKCYPSAFQDDGNMLVCAPTGSGKTNVAMLSILREVGKNRNSQTGEIMLDDFKI 591
Query: 123 IYTSPLKALSNQKYRELHQEFKDVGL----MTGDVTLSPN----ASCLVMTTEILRGMLY 174
+Y SPLKAL ++ + G+ +TGD L+ +V T E +
Sbjct: 592 VYISPLKALVQEQVENFGRRLAPYGIKVAELTGDRQLTKQQIAETQVIVTTPEKFDVITR 651
Query: 175 RGSEV--LKEVAWVIFDEIHYMKDRERGVVWEESIIFLP--------PAIKMVFLSATMS 224
+ SE K V +I DEIH + D ERG V E SI+ A+++V LSAT+
Sbjct: 652 KASETSYTKLVRLIIIDEIHLLHD-ERGPVIE-SIVSRTIRQVEQTGDAVRIVGLSATLP 709
Query: 225 NATQFAEWICHLHKQPCHVVYT---DFRPTPLQ 254
N A + L P ++ +RP PL+
Sbjct: 710 NYRDVASF---LRVDPAKGLFHFDGSYRPCPLK 739
Score = 91 (37.1 bits), Expect = 3.5e-05, Sum P(3) = 3.5e-05
Identities = 32/104 (30%), Positives = 47/104 (45%)
Query: 375 NEEDRNLPA-IELMLPLLKR------------GIAVHHSGLLPVIKELVELLFQEGLVKA 421
++EDR L A IE + PLL R GI +H L K +V L+ G ++
Sbjct: 1641 DDEDRFLHADIEELQPLLGRVHERTLAESLSHGIGYYHEALSQTDKRIVSHLYNIGAIQV 1700
Query: 422 LFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGS--GEYIQM 463
+ A+ LN+ VV + ++G HRYI E +QM
Sbjct: 1701 VIASRDVCWELNLTGHLVVVMGTQFFEGREHRYIDYPISEILQM 1744
Score = 42 (19.8 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 657 SRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKS 701
S F P++ + M V DLV++ LE + P+ +S
Sbjct: 1206 SYFDLDPPRMGELLGMPRAGKTVCDLVSKFPRLEVQAQVQPITRS 1250
Score = 40 (19.1 bits), Expect = 4.0e-09, Sum P(3) = 4.0e-09
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 516 EKALPDIGK-KVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLMSEITRPERVL 572
E L ++ + K+ L+EE S+ A + Y+ + Q +S T+ + +L
Sbjct: 1847 ENTLKELSEAKIIDLDEEDDSVSPLNAASIGAYYNISYITMQTFLLSLSARTKLKGIL 1904
>UNIPROTKB|F1LNJ2 [details] [associations]
symbol:Ascc3l1 "Protein Ascc3l1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 OMA:KWDVLSR GO:GO:0008026
IPI:IPI00562876 PRIDE:F1LNJ2 Ensembl:ENSRNOT00000043895
ArrayExpress:F1LNJ2 Uniprot:F1LNJ2
Length = 2139
Score = 150 (57.9 bits), Expect = 9.8e-09, Sum P(3) = 9.8e-09
Identities = 45/150 (30%), Positives = 78/150 (52%)
Query: 320 IVKMIMERKFQ-PVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQN---AVDCLN 375
+ + IME + V+VF SR+E + A ++ + EKDT+ + + + L
Sbjct: 708 VYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCL----EKDTLGLFLREGSASTEVLR 763
Query: 376 EEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMP 435
E +EL LL G A+HH+G+ V + LVE LF + ++ L +T T A G+N+P
Sbjct: 764 TEAEQCKNLELK-DLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLP 822
Query: 436 AKTVVFTAVKKWDGDSHRY--IGSGEYIQM 463
A TV+ + + + R+ +G+ + +QM
Sbjct: 823 AHTVIIKGTQVYSPEKGRWTELGALDILQM 852
Score = 124 (48.7 bits), Expect = 3.0e-09, Sum P(3) = 3.0e-09
Identities = 45/159 (28%), Positives = 72/159 (45%)
Query: 330 QPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIE-LML 388
+PVIVF SR++ ++ +D T D Q F + C E+D +P +E L
Sbjct: 1560 KPVIVFVPSRKQTR-----LTAIDILTTCAADIQRQRF---LHC-TEKDL-IPYLEKLSD 1609
Query: 389 PLLKR----GIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAV 444
LK G+ H GL P+ + LVE LF G ++ + A+ + G+N+ A V+
Sbjct: 1610 STLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDT 1669
Query: 445 KKWDGDSHRYIGSGEY--IQMSXXXXXXXXXXXXICIIM 481
+ ++G H Y+ Y +QM C+IM
Sbjct: 1670 QYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIM 1708
Score = 123 (48.4 bits), Expect = 3.0e-09, Sum P(3) = 3.0e-09
Identities = 49/202 (24%), Positives = 97/202 (48%)
Query: 78 DPFQ-RVSVACLERNESVLVSAHTSAGKTAVAEYAIA-MAFRDKQ-RVIYTSPLKALSNQ 134
+P Q +V +++V V A T +GKT AE+AI M ++ + R +Y +P++AL+ Q
Sbjct: 1332 NPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQ 1391
Query: 135 KYRELHQEFKD-----VGLMTG----DVTLSPNASCLVMTTEI--LRGMLYRGSEVLKEV 183
Y + +++F+D V L+TG D+ L + ++ T E + ++ + ++ +
Sbjct: 1392 VYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNI 1451
Query: 184 AWVIFDEIHYMKDRERGVVWE---ESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQP 240
+ DE+H + E G V E + ++ I+ +S++ A+ + H
Sbjct: 1452 NLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHW--LG 1508
Query: 241 CHVVYT-----DFRPTPLQHYV 257
C T + RP PL+ ++
Sbjct: 1509 CSATSTFNFHPNVRPVPLELHI 1530
Score = 91 (37.1 bits), Expect = 9.8e-09, Sum P(3) = 9.8e-09
Identities = 44/161 (27%), Positives = 70/161 (43%)
Query: 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGL----MTGDVTLSPN----ASCLVMTTEIL 169
D ++IY +P+++L + + G+ +TGD L +V T E
Sbjct: 534 DDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKW 593
Query: 170 RGMLYRGSE--VLKEVAWVIFDEIHYMKDRERGVVWE-------ESIIFLPPAIKMVFLS 220
+ +G E + V ++ DEIH + D +RG V E +I ++++ LS
Sbjct: 594 DIITRKGGERTYTQLVRLIVLDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLS 652
Query: 221 ATMSNATQFAEWICHLHKQPCH-VVYTD--FRPTPL-QHYV 257
AT+ N A + L P + Y D FRP PL Q YV
Sbjct: 653 ATLPNYEDVATF---LRVDPAKGLFYFDNSFRPVPLEQTYV 690
Score = 61 (26.5 bits), Expect = 9.7e-06, Sum P(3) = 9.7e-06
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 86 ACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-----------DKQRVIYTSPLKALSNQ 134
A LE +E++L+ A T AGKT VA + D ++IY +P+++L +
Sbjct: 491 AALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 550
Query: 135 KYRELHQEFKDVGLMTGDVT 154
+ G+ ++T
Sbjct: 551 MVGSFGKRLATYGITVAELT 570
Score = 38 (18.4 bits), Expect = 3.0e-09, Sum P(3) = 3.0e-09
Identities = 8/46 (17%), Positives = 24/46 (52%)
Query: 708 RCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHID 753
RC + E +I +++ + R++ +Q ++ + +R + +I+
Sbjct: 1976 RCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIE 2021
>ZFIN|ZDB-GENE-060503-421 [details] [associations]
symbol:helq "helicase, POLQ-like" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR010995 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060503-421 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
EMBL:BX649525 CTD:113510 IPI:IPI00799443 RefSeq:XP_691411.3
UniGene:Dr.86132 Ensembl:ENSDART00000109412 GeneID:562952
KEGG:dre:562952 NextBio:20884669 Uniprot:F1Q4P2
Length = 1010
Score = 116 (45.9 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 38/167 (22%), Positives = 76/167 (45%)
Query: 330 QPVIVFSFSRRECEQHAMSMSK-LDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELML 388
Q ++F +++ CE A + K L+ + K+ + + + P ++ +
Sbjct: 499 QSCLIFCATKKNCENLAGMICKYLNKEFIKHKEAEKAILLGELKSSGNGSL-CPVLQKTI 557
Query: 389 PLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448
P G+A HHSGL ++LVE + G++ L T T A G+N+PA+ V+ +
Sbjct: 558 PF---GLAYHHSGLTSDERKLVEEAYSSGVLCLLTCTSTLAAGINLPARRVILRSPYV-A 613
Query: 449 GDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTLKDMV 495
D ++ +Y QM I+++ ++ ++NT K ++
Sbjct: 614 AD---FLKRSQYKQMVGRAGRAGIDAMGESILILQDK-DINTAKKLL 656
Score = 112 (44.5 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 56/211 (26%), Positives = 98/211 (46%)
Query: 83 VSVACLERNESVLVSAHTSAGKTAVAEYAI--AMAFRDKQRVIYTSPLKALSNQKYRELH 140
+S+ +++ +++ S TS GKT VAE I + R K ++ P +L +K R L
Sbjct: 265 LSLDSIQQRRNLIYSLPTSGGKTLVAEILIFKELLCRKKDALLIL-PYISLVQEKVRGLS 323
Query: 141 QEFKDVGLMTGDVTLS----P-----NASCLVMTTEILRGMLYRGSEV----LKEVAWVI 187
++ + + S P N + L +TT I +G S + L + V+
Sbjct: 324 SFGIELDFLVEEYAGSKGKFPPVKRRNKNSLYITT-IEKGHSLVNSLIENDRLDNIGLVV 382
Query: 188 FDEIHYMKDRERGVVWE---ESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 244
DE+H + D RG + E I+++ + +++ +SAT+ N + L +
Sbjct: 383 VDELHMLGDGSRGAILEMTLSKILYMSKSTQVIGMSATLGNVKDLQSF---LRAEN---- 435
Query: 245 YTD-FRPTPLQHYVFPVGGSGLYLVVDEKEQ 274
YT+ FRP L+ YV + S +Y VD KE+
Sbjct: 436 YTNNFRPVELKEYV-KIKDS-IY-EVDPKEE 463
>ZFIN|ZDB-GENE-040724-232 [details] [associations]
symbol:si:rp71-1p14.5 "si:rp71-1p14.5" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 ZFIN:ZDB-GENE-040724-232 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00640000091272 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0003887 EMBL:CU928848
EMBL:CU695000 IPI:IPI00492363 Ensembl:ENSDART00000065556
Uniprot:F1Q4P4
Length = 2576
Score = 110 (43.8 bits), Expect = 3.3e-09, Sum P(5) = 3.3e-09
Identities = 29/116 (25%), Positives = 62/116 (53%)
Query: 333 IVFSFSRRECEQHAMSMSKLDFNTQEEK-------DTVEQVFQNAVDCLNEEDRNLPAIE 385
++F S+ CE+ A S+ + +N ++ ++ + +D L + R ++
Sbjct: 546 LLFCPSKNWCEKLADSIGREFYNLHHKEMQSGSGGQSISLNQEGLLDVLAQLKRTPAGLD 605
Query: 386 LMLP-LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440
+L + G+A HH+GL ++++E F++G ++ L AT T + G+N+PA+ V+
Sbjct: 606 HVLQRTVPWGVAFHHAGLTFDERDILEGAFRQGYIRVLAATSTLSSGVNLPARRVI 661
Score = 106 (42.4 bits), Expect = 3.3e-09, Sum P(5) = 3.3e-09
Identities = 34/123 (27%), Positives = 60/123 (48%)
Query: 92 ESVLVSAHTSAGKTAVAEYAIAM-AFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMT 150
++++ SA TSAGKT V+E I +Q+ ++ P +++ +K L F++ G+
Sbjct: 316 QNLVYSAPTSAGKTLVSELLILKRVLETRQKAMFILPFVSVAREKMFYLQNVFQEAGIRV 375
Query: 151 ----GDVTLSPNASCL---VMTTEILRGMLYR--GSEVLKEVAWVIFDEIHYMKDRERGV 201
G + + S L V T E G++ R + L + V+ DE+H + D RG
Sbjct: 376 EGYMGSTSAAGGFSALDVAVCTIEKANGLVNRLIEEDKLDLLGTVVVDELHMVGDSGRGY 435
Query: 202 VWE 204
+ E
Sbjct: 436 LLE 438
Score = 61 (26.5 bits), Expect = 3.3e-09, Sum P(5) = 3.3e-09
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 550 LKLDIAQLEKKLMSEITRPERVLYYLGSG 578
L +D +QLE ++++ ++R R+L+ L SG
Sbjct: 2321 LAVDYSQLELRILAHLSRDRRLLHVLNSG 2349
Score = 56 (24.8 bits), Expect = 3.3e-09, Sum P(5) = 3.3e-09
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 214 IKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYV 257
++++ +SAT+ N A W+ + T++RP PL +V
Sbjct: 464 VQIIGMSATLPNLDLLARWLS------AELYSTNYRPVPLMEWV 501
Score = 53 (23.7 bits), Expect = 2.9e-08, Sum P(4) = 2.9e-08
Identities = 44/197 (22%), Positives = 76/197 (38%)
Query: 653 QELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQR 712
+EL R Q KLN +K + L N EE+ + + ++++
Sbjct: 1281 EEL-CRIDQVKMKLNKDTGLKKDSRSCTPLPN--EEVTNVCVVSSGKGKKRTSKMKHLNI 1337
Query: 713 KAEVNHEIQQLKSKMRDSQIQKF--RDE----LKNRSRVLKKLGHIDADGVVQLKGRAAC 766
A++NHE Q K +M KF RD+ L +RV L +++ +
Sbjct: 1338 NADINHETQTEKEEMVAEIYGKFSNRDQNEGDLHVNTRVKNDLV-CNSEKLSSPDLYTNG 1396
Query: 767 LIDTGDELLV---TELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQL 823
L + GD + TE M +G +D H V + +K Q++ E
Sbjct: 1397 LEEFGDSFQLDTQTEKMLHG--HDFSHRNVELNV---VRENKQDNQVDSTSEKVVKQSSF 1451
Query: 824 QESARKIAEIQNECKLE 840
E ++++ QN+ E
Sbjct: 1452 LEKENRVSKEQNKGPFE 1468
Score = 48 (22.0 bits), Expect = 1.7e-07, Sum P(6) = 1.7e-07
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 647 SILLAVQELE--SRFPQGLPKLNPVKDMKIEDPEVVDL-VNQIEELEHKLFAHPLNKS 701
S+++ Q LE S+ G P+L K +D V +L V+Q E + K+ H LN S
Sbjct: 1611 SLIIGEQYLEKISKACDG-PRLGAEKPSYTDDI-VSELNVSQSNEYQQKVERHRLNSS 1666
Score = 46 (21.3 bits), Expect = 3.3e-09, Sum P(5) = 3.3e-09
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 497 EGQFTAEHVIKNSFHQ---FQYEKALPDIGKKVSKLEEEAASLDASG--EAEV 544
E +++HV NSF++ F ++ +L D + +EE A D G EAEV
Sbjct: 1519 ENNESSDHVTDNSFNRSSSFLFD-SLYD-NSILDAMEEAAIDQDNKGDQEAEV 1569
Score = 37 (18.1 bits), Expect = 1.7e-07, Sum P(6) = 1.7e-07
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 774 LLVTELMFNGTFND 787
LL EL GTF D
Sbjct: 1977 LLACELAVRGTFED 1990
>DICTYBASE|DDB_G0270042 [details] [associations]
symbol:ascc3l "U5 small nuclear ribonucleoprotein 200
kDa helicase" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 dictyBase:DDB_G0270042 GO:GO:0005524
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 KO:K12854 OMA:KWDVLSR GO:GO:0008026
RefSeq:XP_646493.1 ProteinModelPortal:Q55CI8 STRING:Q55CI8
EnsemblProtists:DDB0233131 GeneID:8617455 KEGG:ddi:DDB_G0270042
InParanoid:Q55CI8 ProtClustDB:CLSZ2431432 Uniprot:Q55CI8
Length = 2237
Score = 131 (51.2 bits), Expect = 3.6e-09, Sum P(4) = 3.6e-09
Identities = 57/206 (27%), Positives = 95/206 (46%)
Query: 91 NESVLVSAHTSAGKTAVAEYAIAMAF---RDKQ---------RVIYTSPLKALSNQKYRE 138
+ ++L+SA TS+GKT VA I RD+ +++Y +P+K+L +
Sbjct: 567 DNNLLLSAPTSSGKTNVAMLTILHEIGKNRDRDSGKIRLDAFKIVYIAPMKSLVQEMVGN 626
Query: 139 LHQEFKDVGL----MTGDVTLSP---NASCLVMTTEILRGMLYR--GSEVLKE-VAWVIF 188
+ K G+ +TGD +L+ + + +++TT ++ R G + V +I
Sbjct: 627 FSKRLKSYGIVVNELTGDQSLTNKQISETQIIVTTPEKWDIITRKSGDRAYTQLVKLIII 686
Query: 189 DEIHYMKDRERGVVWE-------ESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPC 241
DEIH + D ERG V E I +++V LSAT+ N A + L +P
Sbjct: 687 DEIHLLHD-ERGPVLECIVARTLRMIESTQQMVRLVGLSATLPNYEDVATF---LRVEPD 742
Query: 242 HVVYTD--FRPTPLQHYVFPVGGSGL 265
V Y D +RP PL+ + G+
Sbjct: 743 GVFYFDSSYRPIPLEQQYIGISDRGI 768
Score = 114 (45.2 bits), Expect = 3.6e-09, Sum P(4) = 3.6e-09
Identities = 32/112 (28%), Positives = 57/112 (50%)
Query: 332 VIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAV--DCLNEE-DRNLPAIELML 388
+++F SRRE + + + E ++++ ++ + L + + EL
Sbjct: 791 ILIFVHSRRETAKTGKDLR----DRAVEDQSIDRYIRDPASREILRATASKQIQNAELK- 845
Query: 389 PLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440
LL GI +HH+GL + LVE LF + ++ L +T T A G+N+PA TV+
Sbjct: 846 DLLPYGIGIHHAGLSRSDRSLVEDLFGDNRIQVLISTATLAWGVNLPAHTVI 897
Score = 105 (42.0 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 32/123 (26%), Positives = 67/123 (54%)
Query: 87 CL-ERNESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSNQKYRELHQEF 143
C+ + N++ +SA T++GKT AE A+ F+ K +V+Y +P++ L++ + ++ +F
Sbjct: 1408 CMYQSNDNAFISAPTNSGKTVCAEIALIRCFKQNPKAKVVYLAPMQDLASVRLKDWSNKF 1467
Query: 144 ---KDVGLMTGDVT---LSPNA----SCLVMTT----EILRGMLYRGSEVLKEVAWVIFD 189
GL+ D+T ++ N S +++T +IL ++ + L+ + +I D
Sbjct: 1468 GVKSPFGLVVSDLTGDAVTDNKILDRSNIIVTNCEKWDIL-SRKWKQRKALQSINLLIVD 1526
Query: 190 EIH 192
E+H
Sbjct: 1527 ELH 1529
Score = 102 (41.0 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 391 LKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGL-NMPAKTVVFTAVKKWDG 449
L+ G+A +H GL + +VE+LF+ G ++ L AT + A L N+ A+ VV + + G
Sbjct: 1686 LQMGVAFYHDGLTERERRVVEILFRSGSIRVLIATHSVAWLLDNVFAQLVVIMGTQLYQG 1745
Query: 450 DSHRYI 455
RYI
Sbjct: 1746 KDIRYI 1751
Score = 47 (21.6 bits), Expect = 3.6e-09, Sum P(4) = 3.6e-09
Identities = 16/69 (23%), Positives = 33/69 (47%)
Query: 493 DMVLEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKL 552
DM Q +A + + F + +K + KK+ L + S S ++ + ++HK+
Sbjct: 1149 DMFYIAQ-SASRITRALF-EIVLKKGWAQLAKKILNLAKMIDSKMWSSQSPLRQFHKISP 1206
Query: 553 DIA-QLEKK 560
+ QLE++
Sbjct: 1207 KVLNQLERR 1215
Score = 39 (18.8 bits), Expect = 3.6e-09, Sum P(4) = 3.6e-09
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 623 PLISTLSKIRLSVPPDLR 640
P++ L ++ LS+ PD +
Sbjct: 1261 PILHGLLRVELSITPDFQ 1278
>UNIPROTKB|O75643 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;IDA;TAS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0000354 "cis assembly of pre-catalytic
spliceosome" evidence=IC] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IDA] [GO:0005682 "U5 snRNP" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0005682 GO:GO:0003676
Orphanet:791 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOVERGEN:HBG051896 KO:K12854
OMA:KWDVLSR GO:GO:0008026 GO:GO:0000354 EMBL:AY572488 EMBL:AK024391
EMBL:AK090671 EMBL:AB018331 EMBL:Z70200 EMBL:BC065924 EMBL:BC007577
IPI:IPI00168235 IPI:IPI00420014 RefSeq:NP_054733.2
UniGene:Hs.246112 PDB:2Q0Z PDB:4F91 PDB:4F92 PDB:4F93 PDBsum:2Q0Z
PDBsum:4F91 PDBsum:4F92 PDBsum:4F93 ProteinModelPortal:O75643
SMR:O75643 IntAct:O75643 MINT:MINT-5003904 STRING:O75643
PhosphoSite:O75643 PaxDb:O75643 PeptideAtlas:O75643 PRIDE:O75643
Ensembl:ENST00000323853 GeneID:23020 KEGG:hsa:23020 UCSC:uc002svu.3
CTD:23020 GeneCards:GC02M096940 H-InvDB:HIX0002273 HGNC:HGNC:30859
HPA:HPA029321 MIM:601664 MIM:610359 neXtProt:NX_O75643
PharmGKB:PA164726004 InParanoid:O75643 OrthoDB:EOG4WM4SS
PhylomeDB:O75643 ChiTaRS:SNRNP200 EvolutionaryTrace:O75643
GenomeRNAi:23020 NextBio:43966 ArrayExpress:O75643 Bgee:O75643
CleanEx:HS_SNRNP200 Genevestigator:O75643
GermOnline:ENSG00000144028 Uniprot:O75643
Length = 2136
Score = 150 (57.9 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 45/150 (30%), Positives = 78/150 (52%)
Query: 320 IVKMIMERKFQ-PVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQN---AVDCLN 375
+ + IME + V+VF SR+E + A ++ + EKDT+ + + + L
Sbjct: 708 VYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCL----EKDTLGLFLREGSASTEVLR 763
Query: 376 EEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMP 435
E +EL LL G A+HH+G+ V + LVE LF + ++ L +T T A G+N+P
Sbjct: 764 TEAEQCKNLELK-DLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLP 822
Query: 436 AKTVVFTAVKKWDGDSHRY--IGSGEYIQM 463
A TV+ + + + R+ +G+ + +QM
Sbjct: 823 AHTVIIKGTQVYSPEKGRWTELGALDILQM 852
Score = 124 (48.7 bits), Expect = 3.7e-09, Sum P(3) = 3.7e-09
Identities = 45/159 (28%), Positives = 72/159 (45%)
Query: 330 QPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIE-LML 388
+PVIVF SR++ ++ +D T D Q F + C E+D +P +E L
Sbjct: 1557 KPVIVFVPSRKQTR-----LTAIDILTTCAADIQRQRF---LHC-TEKDL-IPYLEKLSD 1606
Query: 389 PLLKR----GIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAV 444
LK G+ H GL P+ + LVE LF G ++ + A+ + G+N+ A V+
Sbjct: 1607 STLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDT 1666
Query: 445 KKWDGDSHRYIGSGEY--IQMSXXXXXXXXXXXXICIIM 481
+ ++G H Y+ Y +QM C+IM
Sbjct: 1667 QYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIM 1705
Score = 122 (48.0 bits), Expect = 3.7e-09, Sum P(3) = 3.7e-09
Identities = 49/202 (24%), Positives = 96/202 (47%)
Query: 78 DPFQ-RVSVACLERNESVLVSAHTSAGKTAVAEYAIA-MAFRDKQ-RVIYTSPLKALSNQ 134
+P Q +V +++V V A T +GKT AE+AI M + + R +Y +P++AL+ Q
Sbjct: 1329 NPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQ 1388
Query: 135 KYRELHQEFKD-----VGLMTG----DVTLSPNASCLVMTTEI--LRGMLYRGSEVLKEV 183
Y + +++F+D V L+TG D+ L + ++ T E + ++ + ++ +
Sbjct: 1389 VYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNI 1448
Query: 184 AWVIFDEIHYMKDRERGVVWE---ESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQP 240
+ DE+H + E G V E + ++ I+ +S++ A+ + H
Sbjct: 1449 NLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHW--LG 1505
Query: 241 CHVVYT-----DFRPTPLQHYV 257
C T + RP PL+ ++
Sbjct: 1506 CSATSTFNFHPNVRPVPLELHI 1527
Score = 92 (37.4 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 45/161 (27%), Positives = 70/161 (43%)
Query: 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGL----MTGDVTLSPN----ASCLVMTTEIL 169
D ++IY +P+++L + + G+ +TGD L +V T E
Sbjct: 534 DDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKW 593
Query: 170 RGMLYRGSE--VLKEVAWVIFDEIHYMKDRERGVVWE-------ESIIFLPPAIKMVFLS 220
+ +G E + V +I DEIH + D +RG V E +I ++++ LS
Sbjct: 594 DIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLS 652
Query: 221 ATMSNATQFAEWICHLHKQPCH-VVYTD--FRPTPL-QHYV 257
AT+ N A + L P + Y D FRP PL Q YV
Sbjct: 653 ATLPNYEDVATF---LRVDPAKGLFYFDNSFRPVPLEQTYV 690
Score = 61 (26.5 bits), Expect = 9.7e-06, Sum P(3) = 9.7e-06
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 86 ACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-----------DKQRVIYTSPLKALSNQ 134
A LE +E++L+ A T AGKT VA + D ++IY +P+++L +
Sbjct: 491 AALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 550
Query: 135 KYRELHQEFKDVGLMTGDVT 154
+ G+ ++T
Sbjct: 551 MVGSFGKRLATYGITVAELT 570
Score = 38 (18.4 bits), Expect = 3.7e-09, Sum P(3) = 3.7e-09
Identities = 8/46 (17%), Positives = 24/46 (52%)
Query: 708 RCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHID 753
RC + E +I +++ + R++ +Q ++ + +R + +I+
Sbjct: 1973 RCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIE 2018
>UNIPROTKB|F1NMU1 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0006281 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 GO:GO:0003887 GO:GO:0043142 EMBL:AADN02037908
IPI:IPI00584654 Ensembl:ENSGALT00000024072 Uniprot:F1NMU1
Length = 904
Score = 119 (46.9 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 33/119 (27%), Positives = 68/119 (57%)
Query: 332 VIVFSFSRRECEQHAMSMSKLDFNTQE-EKDTVEQ-------VFQNAVD-CLNEEDRNLP 382
V++F S+ CE+ A +++ ++ Q+ EK + + V + +D L++ R+L
Sbjct: 305 VLLFCPSKNWCEKLADIIAREFYSLQQAEKGSAKNSSLSPVVVDREGIDEVLDQLRRSLS 364
Query: 383 AIELMLP-LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440
++ +L L G+A HH+GL ++++E F++ ++ L AT T + G+N+PA+ V+
Sbjct: 365 GLDSVLQRTLPWGVAFHHAGLTFDERDIIEGAFRQSTIRVLAATSTLSSGVNLPARRVI 423
Score = 107 (42.7 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 36/123 (29%), Positives = 62/123 (50%)
Query: 92 ESVLVSAHTSAGKTAVAEYAIAM-AFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMT 150
++++ SA TSAGKT VAE I +++ ++ P +++ +K L F++V +
Sbjct: 74 KNLVYSAPTSAGKTLVAELLILKRVLETRKKALFILPFVSVAKEKKCYLQALFQEVDMRV 133
Query: 151 GDV--TLSPNA--SCL---VMTTEILRGMLYRGSEV--LKEVAWVIFDEIHYMKDRERGV 201
G ++SP S L V T E G++ R E + + V+ DE+H + D RG
Sbjct: 134 GGYMGSISPAGRFSLLDVAVCTIEKANGLINRLIEENQMDSLGVVVVDELHMLGDSHRGY 193
Query: 202 VWE 204
+ E
Sbjct: 194 LLE 196
Score = 70 (29.7 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 31/115 (26%), Positives = 50/115 (43%)
Query: 163 VMTTEILRGMLYRGSEV--LKEVAWVIFDEIHYMKDRERGVVWE---ESIIFLP------ 211
V T E G++ R E + + V+ DE+H + D RG + E + ++
Sbjct: 153 VCTIEKANGLINRLIEENQMDSLGVVVVDELHMLGDSHRGYLLELLLTKVRYITEKAAKR 212
Query: 212 ------PA---IKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYV 257
P I++V +SAT+ N A W+ + TDFRP PL+ +V
Sbjct: 213 KTKMKSPGFGGIQVVGMSATLPNLGLLASWL------DAELYCTDFRPVPLKEWV 261
>UNIPROTKB|E2R5U9 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:AAEX03004823
Ensembl:ENSCAFT00000035369 Uniprot:E2R5U9
Length = 1466
Score = 125 (49.1 bits), Expect = 4.6e-09, Sum P(3) = 4.6e-09
Identities = 36/134 (26%), Positives = 67/134 (50%)
Query: 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ------RVIYTSPLKALSNQKYRELHQ 141
L + + ++ A T +GKT V E AI + +++Y +P+KAL +Q++ + +
Sbjct: 295 LYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWSNIKIVYMAPIKALCSQRFDDWKE 354
Query: 142 EFKDVGL----MTGDVTLSP-----NASCLVMTTEILRGML--YRGSEVLKEVAWVIFDE 190
+F +GL +TGD + +A ++ T E M +R + +++ V + DE
Sbjct: 355 KFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDE 414
Query: 191 IHYMKDRERGVVWE 204
+H +KD RG E
Sbjct: 415 VHVVKDENRGPTLE 428
Score = 114 (45.2 bits), Expect = 4.6e-09, Sum P(3) = 4.6e-09
Identities = 32/127 (25%), Positives = 56/127 (44%)
Query: 390 LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDG 449
+L G+A HH+G+ +++VE F G + LF T T AMG+N+PA VV + + G
Sbjct: 579 ILIHGVAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAG 638
Query: 450 DSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTLKDMVLEGQFTAEHVIKNS 509
+ +QM +IM ++T K+ ++ +++S
Sbjct: 639 GMFEEYSETDILQMIGRAGRPQFDTTATAVIMT----RLST-KEKYIQ-MLACSDTVESS 692
Query: 510 FHQFQYE 516
H+ E
Sbjct: 693 LHRHLIE 699
Score = 88 (36.0 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 31/107 (28%), Positives = 51/107 (47%)
Query: 174 YRGSEVLKEVAWVIFDEIHYMKDRERGVVWE------ESIIFL-PPA-------IKMVFL 219
+R + +++ V + DE+H +KD RG E +++ L PP+ ++ V +
Sbjct: 398 WRDNSLVQLVRLFLIDEVHVVKDENRGPTLEVVVSRMKTVQSLSPPSENSTVIPMRFVAV 457
Query: 220 SATMSNATQFAEWICHLHKQP-CHVVYTDFRPTPLQHYV--FPVGGS 263
SAT+ NA AEW+ + C + RP LQ V FP G +
Sbjct: 458 SATIPNAEDIAEWLSDGERPAVCLKMDEKHRPVKLQKVVLGFPCGSN 504
Score = 39 (18.8 bits), Expect = 4.6e-09, Sum P(3) = 4.6e-09
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 724 KSKMRDSQIQKFRDELKNRSRV 745
KS+ ++ I + +L+NR+ V
Sbjct: 1165 KSETKEPTISSYLSDLRNRNAV 1186
>UNIPROTKB|E2RA34 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 KO:K15271 CTD:164045
GeneTree:ENSGT00550000074822 EMBL:AAEX03004823 RefSeq:XP_537081.3
Ensembl:ENSCAFT00000032148 GeneID:479956 KEGG:cfa:479956
Uniprot:E2RA34
Length = 1437
Score = 125 (49.1 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 36/134 (26%), Positives = 67/134 (50%)
Query: 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ------RVIYTSPLKALSNQKYRELHQ 141
L + + ++ A T +GKT V E AI + +++Y +P+KAL +Q++ + +
Sbjct: 295 LYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWSNIKIVYMAPIKALCSQRFDDWKE 354
Query: 142 EFKDVGL----MTGDVTLSP-----NASCLVMTTEILRGML--YRGSEVLKEVAWVIFDE 190
+F +GL +TGD + +A ++ T E M +R + +++ V + DE
Sbjct: 355 KFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDE 414
Query: 191 IHYMKDRERGVVWE 204
+H +KD RG E
Sbjct: 415 VHVVKDENRGPTLE 428
Score = 114 (45.2 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 32/127 (25%), Positives = 56/127 (44%)
Query: 390 LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDG 449
+L G+A HH+G+ +++VE F G + LF T T AMG+N+PA VV + + G
Sbjct: 579 ILIHGVAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAG 638
Query: 450 DSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTLKDMVLEGQFTAEHVIKNS 509
+ +QM +IM ++T K+ ++ +++S
Sbjct: 639 GMFEEYSETDILQMIGRAGRPQFDTTATAVIMT----RLST-KEKYIQ-MLACSDTVESS 692
Query: 510 FHQFQYE 516
H+ E
Sbjct: 693 LHRHLIE 699
Score = 88 (36.0 bits), Expect = 9.8e-05, Sum P(4) = 9.8e-05
Identities = 31/107 (28%), Positives = 51/107 (47%)
Query: 174 YRGSEVLKEVAWVIFDEIHYMKDRERGVVWE------ESIIFL-PPA-------IKMVFL 219
+R + +++ V + DE+H +KD RG E +++ L PP+ ++ V +
Sbjct: 398 WRDNSLVQLVRLFLIDEVHVVKDENRGPTLEVVVSRMKTVQSLSPPSENSTVIPMRFVAV 457
Query: 220 SATMSNATQFAEWICHLHKQP-CHVVYTDFRPTPLQHYV--FPVGGS 263
SAT+ NA AEW+ + C + RP LQ V FP G +
Sbjct: 458 SATIPNAEDIAEWLSDGERPAVCLKMDEKHRPVKLQKVVLGFPCGSN 504
Score = 39 (18.8 bits), Expect = 2.3e-08, Sum P(4) = 2.3e-08
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 724 KSKMRDSQIQKFRDELKNRSRV 745
KS+ ++ I + +L+NR+ V
Sbjct: 1165 KSETKEPTISSYLSDLRNRNAV 1186
Score = 38 (18.4 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 513 FQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYH 548
F + K +P+ V K++ + + E + + YH
Sbjct: 1383 FTHSKKIPNSSHFVKKVDFFIRNNECKEEIDFSRYH 1418
Score = 37 (18.1 bits), Expect = 2.3e-08, Sum P(4) = 2.3e-08
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 835 NECKLEVNVDEY 846
NECK E++ Y
Sbjct: 1406 NECKEEIDFSRY 1417
>WB|WBGene00020964 [details] [associations]
symbol:polq-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1204
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003887 KO:K02349
EMBL:FO081687 EMBL:FO081686 RefSeq:NP_498250.3
ProteinModelPortal:A0FLQ6 PaxDb:A0FLQ6 EnsemblMetazoa:W03A3.2
GeneID:175810 KEGG:cel:CELE_W03A3.2 UCSC:W03A3.2 CTD:175810
WormBase:W03A3.2 InParanoid:A0FLQ6 OMA:EASIPEI NextBio:889766
Uniprot:A0FLQ6
Length = 1661
Score = 122 (48.0 bits), Expect = 5.5e-09, Sum P(3) = 5.5e-09
Identities = 52/214 (24%), Positives = 100/214 (46%)
Query: 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK--DVGL 148
++ ++ SA TSAGK+ VAE ++V++ P +++ +K ++ + ++ D+ +
Sbjct: 44 DQHLIFSAPTSAGKSIVAELLSWKVASTGRKVLFVLPYISVAREKLHQIQRCWRRDDISV 103
Query: 149 --MTGDVTLSPNASC-LVMTTEILRGMLYRG--SEVLKEVAWVIFDEIHYMKDRERGVVW 203
G +PN V T E + R + +E+ ++ DE+H + D RG
Sbjct: 104 CGFIGPQASNPNEWLGAVCTIEKAASLTNRALSEDWFEEIGMIVVDEMHMVFDSSRGAHI 163
Query: 204 EESI--IFL--PPA---IKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHY 256
E + + L A ++++ +SAT+ + +W+ V FRP LQ++
Sbjct: 164 EHMLSKVLLWNQSALEKVRIIGMSATIPELYRIGKWL-----DGAKVFEARFRPIVLQNH 218
Query: 257 VFPVGGSGLYLVVDEK--EQFREDNFVKL-QDTF 287
+ V GS L D K +F ED + L +++F
Sbjct: 219 I--VIGSELRKSGDNKVLREFSEDPLILLTEESF 250
Score = 111 (44.1 bits), Expect = 5.5e-09, Sum P(3) = 5.5e-09
Identities = 32/121 (26%), Positives = 63/121 (52%)
Query: 327 RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCL----NEEDRNLP 382
R Q +++ S S+ + E+ A++++ + ++ ++ + + L + +RN
Sbjct: 252 RNSQTLVMIS-SKLDAEKTALNIASRFHEINKTDSSLLEILKERANGLLFIKHGLERNGC 310
Query: 383 AIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFT 442
++ L G+A HH+GL +E +EL F+E + L AT T A G+N+PA+ V+
Sbjct: 311 KDRNVMSTLAWGVAYHHAGLTMEERECIELGFREKNIVILVATSTLASGVNLPAERVLIK 370
Query: 443 A 443
A
Sbjct: 371 A 371
Score = 46 (21.3 bits), Expect = 5.5e-09, Sum P(3) = 5.5e-09
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 643 DARQSILLAVQELESRFP-QGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKS 701
++R I+ + ++ S F + L P KI + V + N I + +H P+N S
Sbjct: 546 NSRAQIIQKIFKIYSIFILKKFKNLEPKFKKKISENITVHITNSIRKKQHFWHVTPINVS 605
>UNIPROTKB|F1RIW4 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:1900246 "positive regulation of RIG-I signaling
pathway" evidence=IEA] [GO:1900245 "positive regulation of MDA-5
signaling pathway" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003727 "single-stranded RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 GO:GO:0003727 GO:GO:0051607
GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 OMA:QDCTYAD GO:GO:1900245 GO:GO:1900246
GeneTree:ENSGT00690000102154 EMBL:AEMK01191618 EMBL:CU469408
Ensembl:ENSSSCT00000010657 Uniprot:F1RIW4
Length = 1705
Score = 135 (52.6 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 26/52 (50%), Positives = 37/52 (71%)
Query: 390 LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVF 441
L RG+ HHS L K+LVE+LF++G ++ + AT T A+G+NMP K+VVF
Sbjct: 1249 LAARGVGYHHSSLNFKEKQLVEILFRKGFIRVVTATGTLALGINMPCKSVVF 1300
Score = 89 (36.4 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWI 233
+K + +VIFDE+H + +WE ++ + + LSAT+SN EW+
Sbjct: 874 VKRIRYVIFDEVHCLGGEIGAEIWEHLLVMI--RCPFLALSATISNPEHLTEWL 925
Score = 58 (25.5 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 6 MAGKRKAPEEDLHVTGTPEEESTKKQRNLTRSCVHE 41
M K + + + T +E+S KK RN+ +S +HE
Sbjct: 1162 MENKLRKVRKSIEKQKTIDEKSLKKPRNMDQSLIHE 1197
>UNIPROTKB|O75417 [details] [associations]
symbol:POLQ "DNA polymerase theta" species:9606 "Homo
sapiens" [GO:0006260 "DNA replication" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IDA]
[GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271
Pfam:PF00476 PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194
SMART:SM00482 SMART:SM00490 GO:GO:0005524 GO:GO:0005654
GO:GO:0003684 GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098
EMBL:AC069239 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG1204 GO:GO:0008026 GO:GO:0003887 GO:GO:0043142
EMBL:AF052573 EMBL:AY338826 EMBL:AC079841 EMBL:AF043628
IPI:IPI00794779 IPI:IPI01012356 RefSeq:NP_955452.3
UniGene:Hs.241517 ProteinModelPortal:O75417 STRING:O75417
PhosphoSite:O75417 PaxDb:O75417 PRIDE:O75417 DNASU:10721
Ensembl:ENST00000264233 GeneID:10721 KEGG:hsa:10721 UCSC:uc003eed.3
UCSC:uc003eee.4 CTD:10721 GeneCards:GC03M121150 H-InvDB:HIX0030706
HGNC:HGNC:9186 HPA:HPA048931 MIM:604419 neXtProt:NX_O75417
PharmGKB:PA33506 HOGENOM:HOG000146444 HOVERGEN:HBG005525 KO:K02349
OrthoDB:EOG42RD6C ChEMBL:CHEMBL6025 GenomeRNAi:10721 NextBio:40701
ArrayExpress:O75417 Bgee:O75417 CleanEx:HS_POLH CleanEx:HS_POLQ
Genevestigator:O75417 GermOnline:ENSG00000051341 Uniprot:O75417
Length = 2590
Score = 120 (47.3 bits), Expect = 3.4e-08, Sum P(4) = 3.4e-08
Identities = 33/119 (27%), Positives = 67/119 (56%)
Query: 332 VIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQ------VFQNAVDCLNEED--RNLPA 383
V++F S++ CE+ A +++ +N + + + + V + L D R LP+
Sbjct: 340 VLLFCPSKKWCEKLADIIAREFYNLHHQAEGLVKPSECPPVILEQKELLEVMDQLRRLPS 399
Query: 384 -IELMLP-LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440
++ +L + G+A HH+GL ++++E F++GL++ L AT T + G+N+PA+ V+
Sbjct: 400 GLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVI 458
Score = 117 (46.2 bits), Expect = 3.4e-08, Sum P(4) = 3.4e-08
Identities = 44/152 (28%), Positives = 76/152 (50%)
Query: 92 ESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSPLKALSNQKYRELHQEFKDVGLMT 150
++++ SA TSAGKT VAE I + +++ ++ P +++ +K L F++VG+
Sbjct: 109 KNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEVGIKV 168
Query: 151 ----GDVTLSPNASCL---VMTTEILRGMLYRGSEVLKE--VAWVIFDEIHYMKDRERGV 201
G + S + S L V T E G++ R E K + V+ DE+H + D RG
Sbjct: 169 DGYMGSTSPSRHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHRGY 228
Query: 202 VWE---ESIIFLP--PAIKMVFLSATMSNATQ 228
+ E I ++ A L++++SNA Q
Sbjct: 229 LLELLLTKICYITRKSASCQADLASSLSNAVQ 260
Score = 46 (21.3 bits), Expect = 3.4e-08, Sum P(4) = 3.4e-08
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 550 LKLDIAQLEKKLMSEITRPERVLYYLGSG 578
L D +QLE ++++ ++ R++ L +G
Sbjct: 2327 LAADYSQLELRILAHLSHDRRLIQVLNTG 2355
Score = 41 (19.5 bits), Expect = 3.4e-08, Sum P(4) = 3.4e-08
Identities = 9/43 (20%), Positives = 22/43 (51%)
Query: 478 CIIMVDEQMEMNTLKDMVLEGQFTAEHVIKNSFHQFQYEKALP 520
C+ + + + M+ D +L F+ ++++K Q ++ LP
Sbjct: 1475 CLPVPETSLNMS---DSLLFDSFSDDYLVKEQLPDMQMKEPLP 1514
Score = 37 (18.1 bits), Expect = 7.0e-08, Sum P(3) = 7.0e-08
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 547 YHKLKLDIAQLEKKLMSEITR 567
+H ++L ++Q +K+L I R
Sbjct: 771 WHNMELLLSQFQKRLTFGIQR 791
>MGI|MGI:2176740 [details] [associations]
symbol:Helq "helicase, POLQ-like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006259 "DNA metabolic process" evidence=ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017116 "single-stranded
DNA-dependent ATP-dependent DNA helicase activity" evidence=ISO]
[GO:0017117 "single-stranded DNA-dependent ATP-dependent DNA
helicase complex" evidence=ISO] InterPro:IPR001650
InterPro:IPR010995 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2176740 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GeneTree:ENSGT00640000091272
SUPFAM:SSF47794 GO:GO:0017116 CTD:113510 OMA:SRPLENC
OrthoDB:EOG4THVSJ EMBL:BC082601 EMBL:BC109169 EMBL:BC109170
EMBL:AK052427 EMBL:AF436846 IPI:IPI00226287 IPI:IPI00886160
IPI:IPI00890018 RefSeq:NP_001074576.1 UniGene:Mm.21469
ProteinModelPortal:Q2VPA6 SMR:Q2VPA6 STRING:Q2VPA6
PhosphoSite:Q2VPA6 PRIDE:Q2VPA6 Ensembl:ENSMUST00000044684
GeneID:191578 KEGG:mmu:191578 UCSC:uc008yhz.1 UCSC:uc012dzs.1
HOGENOM:HOG000110747 InParanoid:Q2VPA6 NextBio:371088 Bgee:Q2VPA6
Genevestigator:Q2VPA6 GO:GO:0017117 Uniprot:Q2VPA6
Length = 1069
Score = 129 (50.5 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 42/163 (25%), Positives = 76/163 (46%)
Query: 333 IVFSFSRRECEQHAMSMSKL---DFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLP 389
+VF S++ CE A + K D+ EK+ E V ++ + N + P ++ +P
Sbjct: 540 LVFCPSKKNCENVAEMLCKFLSKDYLNHREKEKCE-VIKSLRNIGN--GKVCPVLKRTVP 596
Query: 390 LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDG 449
GIA HHSGL ++L+E + G++ L T T A G+N+PA+ V+ A
Sbjct: 597 F---GIAYHHSGLTSEERKLLEEAYSTGVLCLLTCTSTLAAGVNLPARRVILRAPYV--- 650
Query: 450 DSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTLK 492
++ ++ +Y QM I+++ E+ + L+
Sbjct: 651 -ANTFLKRNQYKQMVGRAGRAGIDTAGESILLLQEKDKQQVLE 692
Score = 88 (36.0 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 39/191 (20%), Positives = 83/191 (43%)
Query: 83 VSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQR-VIYTSPLKALSNQKYRELHQ 141
+++ ++ ++++ S TS GKT VAE + +Q+ V+ P A+ +K L
Sbjct: 303 LTLRSVQERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLMILPYVAIVQEKISSLSS 362
Query: 142 EFKDVGLMTGDVTLS----P------NASCLVMTTEILRGMLYRGSEV--LKEVAWVIFD 189
++G + S P S + T E ++ E L + V+ D
Sbjct: 363 FGIELGFFVEEYAGSKGRFPPIKRREKKSLYIATIEKAHSLVNALIETSRLSTLGLVVVD 422
Query: 190 EIHYMKDRERGVVWEES---IIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYT 246
E+H + + RG + E + +++ +++ +SAT++N ++ K + +
Sbjct: 423 ELHMIGEGSRGAILEMTLAKVLYTSKTTQIIGMSATLNNVEDLQAFL----KAEYYT--S 476
Query: 247 DFRPTPLQHYV 257
FRP L+ ++
Sbjct: 477 QFRPVELKEFL 487
>TAIR|locus:2089144 [details] [associations]
symbol:RCK "ROCK-N-ROLLERS" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA;IMP] [GO:0051026 "chiasma assembly"
evidence=IMP] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0006312 "mitotic recombination" evidence=RCA]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0007067
"mitosis" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0042138 "meiotic DNA double-strand break formation"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 eggNOG:COG1204 GO:GO:0007131
GO:GO:0008026 GO:GO:0051026 KO:K15271 EMBL:AY822649 EMBL:AY960701
IPI:IPI00517826 RefSeq:NP_189410.2 UniGene:At.53523
ProteinModelPortal:Q5D892 SMR:Q5D892 STRING:Q5D892 PRIDE:Q5D892
EnsemblPlants:AT3G27730.1 GeneID:822395 KEGG:ath:AT3G27730
TAIR:At3g27730 HOGENOM:HOG000029933 InParanoid:Q5D892 OMA:IMTRRET
PhylomeDB:Q5D892 ProtClustDB:CLSN2699173 Genevestigator:Q5D892
Uniprot:Q5D892
Length = 1133
Score = 112 (44.5 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 41/182 (22%), Positives = 82/182 (45%)
Query: 320 IVKMIME-RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEED 378
I ++M+ K + +VF +R+ ++ A +++ ++ + ++ L E
Sbjct: 264 IYDILMQYSKGKSALVFCSTRKGAQEAAQKLAQTAMTYGYSNPFIKS--REQLERLREAS 321
Query: 379 RNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKT 438
+ + + M + +G+ H+ GL + LVE LF G ++ + T T A G+N+PA T
Sbjct: 322 P-MCSDKQMQSYILQGVGYHNGGLCQKDRSLVEGLFLNGDIQVICTTNTLAHGINLPAHT 380
Query: 439 VVFTAVKKWDGDSHRYI--GSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTLKDMVL 496
VV + + ++ + Y+ +QMS + IIM + E L + +L
Sbjct: 381 VVIKSTQHFNKEKGHYMEYDRSTLLQMSGRAGRPPFDDTGMVIIMT--RRETVHLYENLL 438
Query: 497 EG 498
G
Sbjct: 439 NG 440
Score = 106 (42.4 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 42/145 (28%), Positives = 67/145 (46%)
Query: 87 CLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQ----------RVIYTSPLKALSN 133
C + ++++SA T +GKT + E I F K+ + +Y SP KAL
Sbjct: 36 CFHSDINMIISAPTGSGKTVLFELCILRLFSKSISKEGSFLHAKGALKTVYISPSKALVQ 95
Query: 134 QKYRELHQEFKDVGL----MTGD-VTLSP----NASCLVMTTEILRGML-YR----GSEV 179
+K R+ +Q+F G+ +TGD T S +A ++ T E + YR G
Sbjct: 96 EKLRDWNQKFNSWGISCLELTGDNETYSTKNIQDADIILTTPEKFDAVSRYRVTSGGLGF 155
Query: 180 LKEVAWVIFDEIHYMKDRERGVVWE 204
++A V+ DE+H + D RG E
Sbjct: 156 FSDIALVLIDEVHLLND-PRGAALE 179
>POMBASE|SPAC9.03c [details] [associations]
symbol:brr2 "U5 snRNP complex subunit Brr2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000393 "spliceosomal
conformational changes to generate catalytic conformation"
evidence=IGI] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005682 "U5 snRNP" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 PomBase:SPAC9.03c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005681
GO:GO:0005682 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749 PIR:T39188
RefSeq:NP_593346.1 ProteinModelPortal:Q9UT24 IntAct:Q9UT24
STRING:Q9UT24 EnsemblFungi:SPAC9.03c.1 GeneID:2543676
KEGG:spo:SPAC9.03c KO:K12854 OMA:KWDVLSR OrthoDB:EOG4MD17F
NextBio:20804682 GO:GO:0046540 GO:GO:0004004 GO:GO:0000393
Uniprot:Q9UT24
Length = 2176
Score = 117 (46.2 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 34/113 (30%), Positives = 61/113 (53%)
Query: 332 VIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEE----DRNLPAIELM 387
V++F SR+E + A + D +EE T+ + ++ D + E + + + E +
Sbjct: 760 VLIFVHSRKETAKTARFIR--DKALEEE--TIGHLLRS--DAASREILRAEADSTSDENL 813
Query: 388 LPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440
LL G A+HH+G+ ++ E LF +G ++ L +T T A G+N+PA TV+
Sbjct: 814 KDLLPYGFAIHHAGMRREDRQTSEDLFADGTIQVLVSTATLAWGVNLPAHTVI 866
Score = 106 (42.4 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 46/158 (29%), Positives = 75/158 (47%)
Query: 121 RVIYTSPLKALSNQKYRELHQEFKDVGL----MTGDVTLSP---NASCLVMTTEILRGML 173
+++Y +PLKAL + + + +TGD L+ + + +++TT ++
Sbjct: 576 KIVYIAPLKALVQEMVNNFSKRLTPYNIRVAELTGDSQLTKQQISETQIIVTTPEKWDII 635
Query: 174 YRGSEVLKEV---AWVIFDEIHYMKDRERGVVWEESI--IFLPPA-----IKMVFLSATM 223
R + L V VI DE+H + D ERG V E + IF +++V LSAT+
Sbjct: 636 TRKANDLSYVNLVRLVIIDEVHLLHD-ERGPVLESIVARIFRHQEETLEQVRLVGLSATL 694
Query: 224 SNATQFAEWICHLHKQPCH-VVYTD--FRPTPL-QHYV 257
N T A + LH P + Y D +RP PL Q ++
Sbjct: 695 PNYTDVASF---LHVDPKKGLFYFDSTYRPCPLKQEFI 729
Score = 106 (42.4 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 41/151 (27%), Positives = 70/151 (46%)
Query: 317 IFKIVK-MIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLN 375
I++ +K I +RK IVF+ R+ +Q A + + F+ +E + + + +N + N
Sbjct: 1584 IYRSLKNFISQRK--STIVFTPDRKVAKQLAFDL--VTFSMADEDEYLFSLMEN--EAFN 1637
Query: 376 E-EDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNM 434
+ ED L LK GIA + +V+ L++ GL+K L A+ L
Sbjct: 1638 KVEDAALQQS------LKHGIAYISEITSSNDQNIVQYLYRHGLIKVLIASRDVIYSLKA 1691
Query: 435 PAKTVVFTAVKKWDGDSHRYIGS--GEYIQM 463
+ V+ + +DG HRYI E +QM
Sbjct: 1692 KSNAVIVMGTQYYDGKEHRYIDYPISELLQM 1722
Score = 90 (36.7 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 91 NESVLVSAHTSAGKTAVAEYAIAMAF--RDKQRVIYTSPLKALSNQKYRELHQEFKDVG 147
N+SV + A +GKT AE A+ + D +Y +P++ + +++Y E + +F D+G
Sbjct: 1380 NDSVFIGAPNGSGKTVCAELALLHHWSQEDYGTAVYIAPIQEIVDRRYEEWYGKFSDLG 1438
Score = 46 (21.3 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 214 IKMVFLSATMSNATQFAEWI 233
I++V LS +++NA EW+
Sbjct: 1523 IRVVGLSVSVANARDLGEWL 1542
>GENEDB_PFALCIPARUM|PF14_0234 [details] [associations]
symbol:PF14_0234 "DNA-directed DNA polymerase,
putative" species:5833 "Plasmodium falciparum" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0003887 KO:K02349
RefSeq:XP_001348408.1 ProteinModelPortal:Q8ILK9
EnsemblProtists:PF14_0234:mRNA GeneID:811816 KEGG:pfa:PF14_0234
EuPathDB:PlasmoDB:PF3D7_1425400 HOGENOM:HOG000281276
ProtClustDB:CLSZ2432457 Uniprot:Q8ILK9
Length = 1236
Score = 104 (41.7 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
Identities = 33/115 (28%), Positives = 54/115 (46%)
Query: 50 LTKDEAIHGTFANPV----YNGEMAKT-YSFELDPFQRVSVACLERNESVLVSAHTSAGK 104
+ KD +IH NP+ Y E K Y ++ + + + E+ E+ + A TS GK
Sbjct: 37 IKKDYSIHHYVTNPIIIDNYKKEKIKELYEWQDECLRELRKVNWEKGENFICVAPTSGGK 96
Query: 105 TAVAEYAIAMAFRD-KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPN 158
T V E I ++ K+++ + PLK+L N+K L K + G V + N
Sbjct: 97 TLVTELFIFEEIKNGKKQIFFLFPLKSLINEKMTYLKNICKGTNIRIG-VEIEEN 150
Score = 82 (33.9 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
Identities = 24/113 (21%), Positives = 56/113 (49%)
Query: 333 IVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAI--ELMLPL 390
++F +++ CE + +++ NT + + + + L E+ N+ E M L
Sbjct: 643 LIFCCTKKMCEFYINLINEY-LNTLKSLPIPQYIDMKRKE-LKEKIYNIDKCIYEKMHKL 700
Query: 391 LKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA 443
+ G+ ++S + +K L+E+ ++E + L T T ++GLN+ V+ ++
Sbjct: 701 ISNGLCYYYSDISHSVKRLLEVAYKEKTLFLLTCTSTLSVGLNLFVDRVIISS 753
Score = 78 (32.5 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
Identities = 26/108 (24%), Positives = 52/108 (48%)
Query: 186 VIFDEIHYMKDRERGVVWEE---SIIFLPPA---IKMVFLSATMSNATQFAEWICHLHKQ 239
VI DE H++ ++ RG+ E I+++ IK++ +S T++N + +W+ K
Sbjct: 208 VIIDEFHHINEKGRGIYIENIVSKILYMNKKRSRIKIICMSGTLNNISILKKWM----KA 263
Query: 240 PCHVVYTDFRPTPL-QHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDT 286
++ + +RP + +HYV +Y V + + + N DT
Sbjct: 264 KFYI--STYRPQEIKEHYVC---NFNVYKKVQDGKFYNTCNVFSFNDT 306
>UNIPROTKB|Q8ILK9 [details] [associations]
symbol:PF14_0234 "DNA-directed DNA polymerase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0003887 KO:K02349
RefSeq:XP_001348408.1 ProteinModelPortal:Q8ILK9
EnsemblProtists:PF14_0234:mRNA GeneID:811816 KEGG:pfa:PF14_0234
EuPathDB:PlasmoDB:PF3D7_1425400 HOGENOM:HOG000281276
ProtClustDB:CLSZ2432457 Uniprot:Q8ILK9
Length = 1236
Score = 104 (41.7 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
Identities = 33/115 (28%), Positives = 54/115 (46%)
Query: 50 LTKDEAIHGTFANPV----YNGEMAKT-YSFELDPFQRVSVACLERNESVLVSAHTSAGK 104
+ KD +IH NP+ Y E K Y ++ + + + E+ E+ + A TS GK
Sbjct: 37 IKKDYSIHHYVTNPIIIDNYKKEKIKELYEWQDECLRELRKVNWEKGENFICVAPTSGGK 96
Query: 105 TAVAEYAIAMAFRD-KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPN 158
T V E I ++ K+++ + PLK+L N+K L K + G V + N
Sbjct: 97 TLVTELFIFEEIKNGKKQIFFLFPLKSLINEKMTYLKNICKGTNIRIG-VEIEEN 150
Score = 82 (33.9 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
Identities = 24/113 (21%), Positives = 56/113 (49%)
Query: 333 IVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAI--ELMLPL 390
++F +++ CE + +++ NT + + + + L E+ N+ E M L
Sbjct: 643 LIFCCTKKMCEFYINLINEY-LNTLKSLPIPQYIDMKRKE-LKEKIYNIDKCIYEKMHKL 700
Query: 391 LKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA 443
+ G+ ++S + +K L+E+ ++E + L T T ++GLN+ V+ ++
Sbjct: 701 ISNGLCYYYSDISHSVKRLLEVAYKEKTLFLLTCTSTLSVGLNLFVDRVIISS 753
Score = 78 (32.5 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
Identities = 26/108 (24%), Positives = 52/108 (48%)
Query: 186 VIFDEIHYMKDRERGVVWEE---SIIFLPPA---IKMVFLSATMSNATQFAEWICHLHKQ 239
VI DE H++ ++ RG+ E I+++ IK++ +S T++N + +W+ K
Sbjct: 208 VIIDEFHHINEKGRGIYIENIVSKILYMNKKRSRIKIICMSGTLNNISILKKWM----KA 263
Query: 240 PCHVVYTDFRPTPL-QHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDT 286
++ + +RP + +HYV +Y V + + + N DT
Sbjct: 264 KFYI--STYRPQEIKEHYVC---NFNVYKKVQDGKFYNTCNVFSFNDT 306
>DICTYBASE|DDB_G0278937 [details] [associations]
symbol:DDB_G0278937 "ATP-dependent RNA helicase
SUPV3L1, mitochondrial" species:44689 "Dictyostelium discoideum"
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR022192
Pfam:PF00271 Pfam:PF12513 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0278937 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000024 GO:GO:0004386 eggNOG:COG0513 RefSeq:XP_641977.1
EnsemblProtists:DDB0218122 GeneID:8621709 KEGG:ddi:DDB_G0278937
InParanoid:Q54XQ3 ProtClustDB:CLSZ2846828 Uniprot:Q54XQ3
Length = 904
Score = 117 (46.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 38/149 (25%), Positives = 74/149 (49%)
Query: 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGL 148
+RN +L T++GKT Y + + +Y PL+ L+++ Y ++++ D L
Sbjct: 402 KRN-IILHVGPTNSGKT----YNALKRLMESESGVYCGPLRLLAHEVYDKMNENGLDTSL 456
Query: 149 MTGDVTLS-PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESI 207
MTG + ++ PN++ T E++ ++ + EVA + DE M D RG W +I
Sbjct: 457 MTGQLRINNPNSTHSSCTIEMV------STDKMVEVA--VIDEFQLMSDTIRGQSWTRAI 508
Query: 208 IFLPPAIKMVFLSATMSNATQFAEWICHL 236
+ +P A+++ + A + + IC +
Sbjct: 509 LGIP-AVELHLCGD--NTAIELVKKICEI 534
Score = 92 (37.4 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 390 LLKRGI--AVHHSGLLPVIKELVELLFQ-EGLVKALFATETFAMGLNMPAKTVVFTAVKK 446
L K+G+ AV + L P + LF + V L AT+ MGLN+ V+F +KK
Sbjct: 584 LEKQGLKCAVVYGSLPPTTRVQQAKLFNTDESVDVLIATDAIGMGLNLNIGRVIFLTLKK 643
Query: 447 WDGDSHRYIGSGEYIQMS 464
+DG+ R + + E Q++
Sbjct: 644 YDGEVDRELYASEVKQIA 661
>UNIPROTKB|H9L343 [details] [associations]
symbol:H9L343 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0055087 "Ski complex" evidence=IEA]
InterPro:IPR025696 Pfam:PF13234 GeneTree:ENSGT00690000102154
EMBL:AADN02042840 Ensembl:ENSGALT00000036117 OMA:LLSCHEL
Uniprot:H9L343
Length = 131
Score = 130 (50.8 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 37/128 (28%), Positives = 61/128 (47%)
Query: 660 PQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRC-FQRKAEVNH 718
P GLP L+PV +++ DP V+ + L L Q+ F + +
Sbjct: 6 PGGLPLLDPVGALQLRDPPAVEAAARARSLGAALGGFRCVHGPRFPQLYSQFAARRRLQA 65
Query: 719 EIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTE 778
+++QL+ ++ D + E + R VL+ LG++ G VQL GR A L+ ELL+TE
Sbjct: 66 QVEQLQYELSDRSLLLL-PEYRQRLGVLRALGYVADGGAVQLPGRVAALLSC-HELLLTE 123
Query: 779 LMFNGTFN 786
L+ +
Sbjct: 124 LLLGNVLS 131
>ASPGD|ASPL0000030426 [details] [associations]
symbol:AN5514 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=IEA] [GO:0007129
"synapsis" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 EMBL:BN001305 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 eggNOG:COG1204 EMBL:AACD01000094 GO:GO:0008026
KO:K15271 OrthoDB:EOG4WWVSR RefSeq:XP_663118.1
ProteinModelPortal:Q5B1R6 EnsemblFungi:CADANIAT00003572
GeneID:2871792 KEGG:ani:AN5514.2 HOGENOM:HOG000216651
Uniprot:Q5B1R6
Length = 1385
Score = 165 (63.1 bits), Expect = 5.4e-07, Sum P(3) = 5.4e-07
Identities = 65/245 (26%), Positives = 109/245 (44%)
Query: 15 EDLHVTGTPEEESTKKQRNLTRSCV-HEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTY 73
E H T E + R T H++A P T D I E+ Y
Sbjct: 189 EIFHPQSTDRE--VQHDRTSTNPATSHDLAEPFKDVPTSDRGIALLSVR-----ELPDNY 241
Query: 74 S--FELDPFQRVSVACL----ERNESVLVSAHTSAGKTAVAEYAIAMAF---RDKQ-RVI 123
F F V C + +++V+++A T +GKT V E AI +DK+ +V+
Sbjct: 242 RPLFNFPVFNAVQSKCFHAIYKSDDNVVIAAPTGSGKTVVMELAICRLLNIRKDKKFKVV 301
Query: 124 YTSPLKALSNQKYRELHQEFKDVGL----MTGDVTLSP-----NASCLVMTTEILRGMLY 174
Y +P K+L ++++R+ +Q+F +GL +TGD S N +V T E M
Sbjct: 302 YQAPTKSLCSERFRDWNQKFHALGLQCAELTGDTDHSQLGNVQNRQIIVTTPEKWDSMTR 361
Query: 175 RGSE---VLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPA---IKMVFLSATMSNATQ 228
+ + +++ V + DE+H +K+ RG E + + ++ V LSAT+ N+
Sbjct: 362 KWKDHIRLMQPVKLFLIDEVHTLKEA-RGATLEAVVSRMKSIGSNVRFVALSATIPNSED 420
Query: 229 FAEWI 233
A W+
Sbjct: 421 IATWL 425
Score = 50 (22.7 bits), Expect = 5.4e-07, Sum P(3) = 5.4e-07
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 394 GIAVHHSGLLPVIKELVELLFQEGLVKAL 422
G+A HH+GL + LVE + +G + +
Sbjct: 536 GVAFHHAGLETEDRHLVENGYLQGKISVI 564
Score = 40 (19.1 bits), Expect = 5.4e-07, Sum P(3) = 5.4e-07
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 770 TGDELLVTELMFNGTFNDLDHHQV 793
T DELL E + +G +D D V
Sbjct: 1057 TTDELLFGEWLNSGLLDDWDDKDV 1080
>UNIPROTKB|J9P160 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 CTD:113510 EMBL:AAEX03016730 RefSeq:XP_544959.2
Ensembl:ENSCAFT00000044378 GeneID:487837 KEGG:cfa:487837
Uniprot:J9P160
Length = 1072
Score = 113 (44.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 31/112 (27%), Positives = 56/112 (50%)
Query: 333 IVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNL-PAIELMLPLL 391
+VF +++ CE A + + + Q K ++ + + N NL P ++ +P
Sbjct: 553 LVFCPTKKNCENVAEMICRF-LSKQYLKHREKEKHEVIKNLKNISSGNLCPILKRTIPF- 610
Query: 392 KRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA 443
G+A HHSGL ++L+E + G++ T T A G+N+PA+ V+ A
Sbjct: 611 --GVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRA 660
Score = 91 (37.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 53/274 (19%), Positives = 114/274 (41%)
Query: 3 ESLMAGKRKAPEEDLHVTGTPEEESTKKQRNLTRSCVHEVAVPSGYALTKDEAIHGTFAN 62
+S M G KA T +E ++ N+ + + + G + + +
Sbjct: 242 KSAMTGNAKAQTPVFSRTKQLKETLLSEEINVAKKAIESSSDDLGPFYSLPTKVRDLYVQ 301
Query: 63 PVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQR- 121
+ G + K Y ++ +++ ++ ++++ S TS GKT VAE + ++R
Sbjct: 302 --FKG-IEKLYEWQ---HTCLTLNSVQERKNLIYSLPTSGGKTLVAEILMLQELLCRRRD 355
Query: 122 VIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLS----P------NASCLVMTTE---- 167
V+ P A+ +K L ++G + S P S + T E
Sbjct: 356 VLMILPYVAIVQEKISGLSSFGIELGFFVEEYAGSKGKFPPIKRRGKKSLYIATIEKGNS 415
Query: 168 ILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES---IIFLPPAIKMVFLSATMS 224
++ ++ G + + V+ DE+H + + RG + E + +++ +++ +SAT++
Sbjct: 416 LVNSLIETGR--ISSLGLVVVDELHMIGEGSRGAILEMTLAKVLYTSKTTQIIGMSATLT 473
Query: 225 NATQFAEWICHLHKQPCHVVYTD-FRPTPLQHYV 257
N +++ Q + YT FRP L+ Y+
Sbjct: 474 NVEDLQKFL-----QAEY--YTSQFRPVELKEYL 500
>UNIPROTKB|E2RST3 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 OMA:SRPLENC EMBL:AAEX03016730
Ensembl:ENSCAFT00000014486 Uniprot:E2RST3
Length = 1106
Score = 113 (44.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 31/112 (27%), Positives = 56/112 (50%)
Query: 333 IVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNL-PAIELMLPLL 391
+VF +++ CE A + + + Q K ++ + + N NL P ++ +P
Sbjct: 587 LVFCPTKKNCENVAEMICRF-LSKQYLKHREKEKHEVIKNLKNISSGNLCPILKRTIPF- 644
Query: 392 KRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA 443
G+A HHSGL ++L+E + G++ T T A G+N+PA+ V+ A
Sbjct: 645 --GVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRA 694
Score = 91 (37.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 53/274 (19%), Positives = 114/274 (41%)
Query: 3 ESLMAGKRKAPEEDLHVTGTPEEESTKKQRNLTRSCVHEVAVPSGYALTKDEAIHGTFAN 62
+S M G KA T +E ++ N+ + + + G + + +
Sbjct: 276 KSAMTGNAKAQTPVFSRTKQLKETLLSEEINVAKKAIESSSDDLGPFYSLPTKVRDLYVQ 335
Query: 63 PVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQR- 121
+ G + K Y ++ +++ ++ ++++ S TS GKT VAE + ++R
Sbjct: 336 --FKG-IEKLYEWQ---HTCLTLNSVQERKNLIYSLPTSGGKTLVAEILMLQELLCRRRD 389
Query: 122 VIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLS----P------NASCLVMTTE---- 167
V+ P A+ +K L ++G + S P S + T E
Sbjct: 390 VLMILPYVAIVQEKISGLSSFGIELGFFVEEYAGSKGKFPPIKRRGKKSLYIATIEKGNS 449
Query: 168 ILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES---IIFLPPAIKMVFLSATMS 224
++ ++ G + + V+ DE+H + + RG + E + +++ +++ +SAT++
Sbjct: 450 LVNSLIETGR--ISSLGLVVVDELHMIGEGSRGAILEMTLAKVLYTSKTTQIIGMSATLT 507
Query: 225 NATQFAEWICHLHKQPCHVVYTD-FRPTPLQHYV 257
N +++ Q + YT FRP L+ Y+
Sbjct: 508 NVEDLQKFL-----QAEY--YTSQFRPVELKEYL 534
>UNIPROTKB|E1BMC0 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003887
GO:GO:0043142 EMBL:DAAA02001581 EMBL:DAAA02001582 EMBL:DAAA02001583
IPI:IPI00687324 Ensembl:ENSBTAT00000002501 OMA:CFSDESI
Uniprot:E1BMC0
Length = 2728
Score = 110 (43.8 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 43/152 (28%), Positives = 74/152 (48%)
Query: 92 ESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSPLKALSNQKYRELHQEFKDVGLMT 150
++++ SA TSAGKT VAE I + +++ ++ P +++ +K L F++VG+
Sbjct: 241 KNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEVGIKV 300
Query: 151 ----GDVTLSPNASCL---VMTTEILRGMLYRGSEVLKE--VAWVIFDEIHYMKDRERGV 201
G + + + S L V T E G++ R E K + V+ DE+H + D RG
Sbjct: 301 DGYMGSTSPTRHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHRGY 360
Query: 202 VWE---ESIIFLPP--AIKMVFLSATMSNATQ 228
+ E I ++ A L+ +SNA Q
Sbjct: 361 LLELLLTKICYITQKSASCQADLAIPLSNAVQ 392
Score = 106 (42.4 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 18/47 (38%), Positives = 33/47 (70%)
Query: 394 GIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440
G+A HH+GL ++++E F++G ++ L AT T + G+N+PA+ V+
Sbjct: 546 GVAFHHAGLTFEERDIIEGAFRQGQIRVLAATSTLSSGVNLPARRVI 592
Score = 46 (21.3 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 550 LKLDIAQLEKKLMSEITRPERVLYYLGSG 578
L D +QLE ++++ ++ R++ L +G
Sbjct: 2463 LAADYSQLELRILAHLSHDRRLIQVLNTG 2491
Score = 37 (18.1 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 547 YHKLKLDIAQLEKKLMSEITR 567
+H ++L ++Q +K+L I R
Sbjct: 908 WHNMELLLSQFQKRLTFGIQR 928
>FB|FBgn0002905 [details] [associations]
symbol:mus308 "mutagen-sensitive 308" species:7227
"Drosophila melanogaster" [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS;NAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IMP] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR003583 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00476 PRINTS:PR00868
PROSITE:PS51194 SMART:SM00278 SMART:SM00482 SMART:SM00490
EMBL:AE014297 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006200 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GeneTree:ENSGT00640000091272
GO:GO:0006303 GO:GO:0006289 GO:GO:0008026 GO:GO:0003887 KO:K02349
OMA:EASIPEI EMBL:L76559 EMBL:BT044169 PIR:T13858 RefSeq:NP_524333.1
UniGene:Dm.23677 HSSP:P00582 SMR:O18475 STRING:O18475
EnsemblMetazoa:FBtr0082662 GeneID:41571 KEGG:dme:Dmel_CG6019
UCSC:CG6019-RA CTD:41571 FlyBase:FBgn0002905 InParanoid:O18475
OrthoDB:EOG4FJ6QM GenomeRNAi:41571 NextBio:824448 Uniprot:O18475
Length = 2059
Score = 120 (47.3 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 34/117 (29%), Positives = 66/117 (56%)
Query: 332 VIVFSFSRRECEQHAMSMSKLDFNTQEEKDTV--EQVFQN----AVDCLNEEDRNLPA-I 384
VIVF S+ CE A+ ++ + Q + +TV +++ N A+ + ++ R++P +
Sbjct: 474 VIVFCPSKDWCENLAVQLATA-IHVQIKSETVLGQRLRTNLNPRAIAEVKQQLRDIPTGL 532
Query: 385 E-LMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440
+ +M + A HH+GL ++++E F+ G +K L AT T + G+N+PA+ V+
Sbjct: 533 DGVMSKAITYACAFHHAGLTTEERDIIEASFKAGALKVLVATSTLSSGVNLPARRVL 589
Score = 99 (39.9 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 41/185 (22%), Positives = 81/185 (43%)
Query: 93 SVLVSAHTSAGKTAVAEYAIAMAFRDK-QRVIYTSPLKALSNQKYRELHQEFKDVGLMT- 150
+++ SA TSAGKT V+E + ++ ++V+ P ++ +K + G
Sbjct: 251 NLVYSAPTSAGKTLVSEILMLKTVLERGKKVLLILPFISVVREKMFYMQDLLTPAGYRVE 310
Query: 151 ---GDVTLSPN-------ASCLV-MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRER 199
G T P A C + I+ ++ +G L+ + V+ DE+H + D+ R
Sbjct: 311 GFYGGYT-PPGGFESLHVAICTIEKANSIVNKLMEQGK--LETIGMVVVDEVHLISDKGR 367
Query: 200 GVVWE---ESIIFLPPA----IKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTP 252
G + E I+++ I+++ +SAT+ N W+ + T++RP
Sbjct: 368 GYILELLLAKILYMSRRNGLQIQVITMSATLENVQLLQSWL------DAELYITNYRPVA 421
Query: 253 LQHYV 257
L+ +
Sbjct: 422 LKEMI 426
Score = 38 (18.4 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 550 LKLDIAQLEKKLMSEITRPERVLYYLGSGR 579
L D QLE ++++ +++ + +L + S +
Sbjct: 1822 LSADFCQLEMRILAHMSQDKALLEVMKSSQ 1851
>UNIPROTKB|E9PSY5 [details] [associations]
symbol:Helq "Protein Helq" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1560216 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI01007603 Ensembl:ENSRNOT00000031633 ArrayExpress:E9PSY5
Uniprot:E9PSY5
Length = 805
Score = 116 (45.9 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 39/164 (23%), Positives = 74/164 (45%)
Query: 333 IVFSFSRRECEQHAMSMSKL---DF--NTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELM 387
+VF S++ CE A + K D+ + +EEK + + +N + P ++
Sbjct: 536 LVFCPSKKNCENVAEMLCKFLSRDYLNHREEEKGELIKSLRNV-----GHGKVCPVLKRT 590
Query: 388 LPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKW 447
+P G+A HHSGL ++L+E + G++ T T A G+N+PA+ V+ A
Sbjct: 591 IPF---GVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYV- 646
Query: 448 DGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTL 491
++ ++ +Y QM I+++ E+ + L
Sbjct: 647 ---ANTFLKRNQYKQMIGRAGRAGIDTAGESILLLQEKDKQQVL 687
Score = 82 (33.9 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 38/193 (19%), Positives = 85/193 (44%)
Query: 83 VSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQR-VIYTSPLKALSNQKYRELHQ 141
++++ ++ ++++ S TS GKT VAE + +Q+ V+ P A+ +K L
Sbjct: 299 LTLSSVQERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLLILPYVAIVQEKISSLSS 358
Query: 142 EFKDVGLMTGDVTLS----P------NASCLVMTTE----ILRGMLYRGSEVLKEVAWVI 187
++G + S P S + T E ++ ++ G + + V+
Sbjct: 359 FGIELGFFVEEYAGSKGRFPPIKRREKKSLYIATIEKGHSLVNALIETGR--MGTLGLVV 416
Query: 188 FDEIHYMKDRERGVVWEES---IIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 244
DE+H + + RG E + +++ +++ +SAT++N ++ K +
Sbjct: 417 VDELHMIGEGSRGATLEMTLAKVLYTSKTTQIIGMSATLNNVEDLQAFL----KAEYYT- 471
Query: 245 YTDFRPTPLQHYV 257
+ FRP L+ ++
Sbjct: 472 -SQFRPVELKEFL 483
>UNIPROTKB|E9PT19 [details] [associations]
symbol:Helq "Protein Helq" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1560216
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 IPI:IPI00958253 Ensembl:ENSRNOT00000002974
ArrayExpress:E9PT19 Uniprot:E9PT19
Length = 879
Score = 116 (45.9 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 39/164 (23%), Positives = 74/164 (45%)
Query: 333 IVFSFSRRECEQHAMSMSKL---DF--NTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELM 387
+VF S++ CE A + K D+ + +EEK + + +N + P ++
Sbjct: 536 LVFCPSKKNCENVAEMLCKFLSRDYLNHREEEKGELIKSLRNV-----GHGKVCPVLKRT 590
Query: 388 LPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKW 447
+P G+A HHSGL ++L+E + G++ T T A G+N+PA+ V+ A
Sbjct: 591 IPF---GVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYV- 646
Query: 448 DGDSHRYIGSGEYIQMSXXXXXXXXXXXXICIIMVDEQMEMNTL 491
++ ++ +Y QM I+++ E+ + L
Sbjct: 647 ---ANTFLKRNQYKQMIGRAGRAGIDTAGESILLLQEKDKQQVL 687
Score = 82 (33.9 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 38/193 (19%), Positives = 85/193 (44%)
Query: 83 VSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQR-VIYTSPLKALSNQKYRELHQ 141
++++ ++ ++++ S TS GKT VAE + +Q+ V+ P A+ +K L
Sbjct: 299 LTLSSVQERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLLILPYVAIVQEKISSLSS 358
Query: 142 EFKDVGLMTGDVTLS----P------NASCLVMTTE----ILRGMLYRGSEVLKEVAWVI 187
++G + S P S + T E ++ ++ G + + V+
Sbjct: 359 FGIELGFFVEEYAGSKGRFPPIKRREKKSLYIATIEKGHSLVNALIETGR--MGTLGLVV 416
Query: 188 FDEIHYMKDRERGVVWEES---IIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 244
DE+H + + RG E + +++ +++ +SAT++N ++ K +
Sbjct: 417 VDELHMIGEGSRGATLEMTLAKVLYTSKTTQIIGMSATLNNVEDLQAFL----KAEYYT- 471
Query: 245 YTDFRPTPLQHYV 257
+ FRP L+ ++
Sbjct: 472 -SQFRPVELKEFL 483
>UNIPROTKB|Q8TDG4 [details] [associations]
symbol:HELQ "Helicase POLQ-like" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AF436845 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GO:GO:0008026 EMBL:AK128665
EMBL:AC096768 EMBL:BC015428 EMBL:BC095473 EMBL:AL512702
IPI:IPI00152527 IPI:IPI00647582 IPI:IPI00807650 IPI:IPI00889496
RefSeq:NP_598375.2 UniGene:Hs.480101 ProteinModelPortal:Q8TDG4
SMR:Q8TDG4 IntAct:Q8TDG4 STRING:Q8TDG4 PhosphoSite:Q8TDG4
DMDM:296434521 PaxDb:Q8TDG4 PRIDE:Q8TDG4 DNASU:113510
Ensembl:ENST00000295488 GeneID:113510 KEGG:hsa:113510
UCSC:uc003hom.3 UCSC:uc003hoo.1 UCSC:uc003hop.1 CTD:113510
GeneCards:GC04M084328 HGNC:HGNC:18536 HPA:HPA036853 MIM:606769
neXtProt:NX_Q8TDG4 PharmGKB:PA164720529 InParanoid:Q8TDG4
OMA:SRPLENC OrthoDB:EOG4THVSJ PhylomeDB:Q8TDG4 GenomeRNAi:113510
NextBio:78853 ArrayExpress:Q8TDG4 Bgee:Q8TDG4 Genevestigator:Q8TDG4
Uniprot:Q8TDG4
Length = 1101
Score = 123 (48.4 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 36/115 (31%), Positives = 60/115 (52%)
Query: 333 IVFSFSRRECEQHAMSMSKL---DFNTQEEKDTVEQVFQNAVDCLNEEDRNL-PAIELML 388
+VF S++ CE A + K ++ +EK+ E V +N + N NL P ++ +
Sbjct: 581 LVFCPSKKNCENVAEMICKFLSKEYLKHKEKEKCE-VIKNLKNIGNG---NLCPVLKRTI 636
Query: 389 PLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA 443
P G+A HHSGL ++L+E + G++ T T A G+N+PA+ V+ A
Sbjct: 637 PF---GVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRA 688
Score = 77 (32.2 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 41/189 (21%), Positives = 82/189 (43%)
Query: 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSPLKALSNQKYRELHQEFKDV 146
++ ++++ S TS GKT VAE + ++ V+ P A+ +K L ++
Sbjct: 349 VQERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIEL 408
Query: 147 GLMTGDVTLS----P------NASCLVMTTE----ILRGMLYRGSEVLKEVAWVIFDEIH 192
G + S P S + T E ++ ++ G + + V+ DE+H
Sbjct: 409 GFFVEEYAGSKGRFPPTKRREKKSLYIATIEKGHSLVNSLIETGR--IDSLGLVVVDELH 466
Query: 193 YMKDRERGVVWEES---IIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTD-F 248
+ + RG E + I++ +++ +SAT++N +++ Q + YT F
Sbjct: 467 MIGEGSRGATLEMTLAKILYTSKTTQIIGMSATLNNVEDLQKFL-----QAEY--YTSQF 519
Query: 249 RPTPLQHYV 257
RP L+ Y+
Sbjct: 520 RPVELKEYL 528
>UNIPROTKB|F1PXD9 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AAEX03017021 Ensembl:ENSCAFT00000018256
OMA:NECHITF Uniprot:F1PXD9
Length = 1835
Score = 108 (43.1 bits), Expect = 5.3e-06, Sum P(3) = 5.3e-06
Identities = 43/152 (28%), Positives = 77/152 (50%)
Query: 92 ESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSPLKALSNQKYRELHQEFKDVGL-M 149
++++ SA TSAGKT VAE + + +++ ++ P +++ +K L F+++G+ +
Sbjct: 18 KNLVYSAPTSAGKTLVAELLMLKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEIGINV 77
Query: 150 TGDV-TLSPNA--SCL---VMTTEILRGMLYRGSEVLKE--VAWVIFDEIHYMKDRERGV 201
G + + SP S L V T E G++ R E K + V+ DE+H + D RG
Sbjct: 78 DGYMGSTSPTGHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHRGY 137
Query: 202 VWE---ESIIFLP--PAIKMVFLSATMSNATQ 228
+ E I ++ A L++ +SNA Q
Sbjct: 138 LLELLLTKICYITHKSASCQADLASPLSNAVQ 169
Score = 106 (42.4 bits), Expect = 5.3e-06, Sum P(3) = 5.3e-06
Identities = 18/47 (38%), Positives = 33/47 (70%)
Query: 394 GIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440
G+A HH+GL ++++E F++G ++ L AT T + G+N+PA+ V+
Sbjct: 321 GVAFHHAGLTFEERDIIEGAFRQGQIRVLAATSTLSSGVNLPARRVI 367
Score = 37 (18.1 bits), Expect = 5.3e-06, Sum P(3) = 5.3e-06
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 547 YHKLKLDIAQLEKKLMSEITR 567
+H ++L ++Q +K+L I R
Sbjct: 680 WHNMELLLSQFQKRLTFGIQR 700
>UNIPROTKB|H9L351 [details] [associations]
symbol:H9L351 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 GeneTree:ENSGT00640000091272 EMBL:AADN02064073
EMBL:AADN02064074 Ensembl:ENSGALT00000021750
Ensembl:ENSGALT00000036125 Uniprot:H9L351
Length = 254
Score = 135 (52.6 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 35/110 (31%), Positives = 59/110 (53%)
Query: 359 EKDTVEQVFQN---AVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQ 415
EKDT+ + + + L E +EL LL G A+HH+G+ V + LVE LF
Sbjct: 4 EKDTLGLFLREGSASTEVLRTEAEQCKNLELK-DLLPYGFAIHHAGMTRVDRTLVEDLFA 62
Query: 416 EGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRY--IGSGEYIQM 463
+ ++ L +T T A G+N+PA TV+ + + + R+ +G+ + +QM
Sbjct: 63 DKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQM 112
>UNIPROTKB|B4E0P5 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR001650
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0030529 GO:GO:0004386 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AC021188 UniGene:Hs.246112
HGNC:HGNC:30859 ChiTaRS:SNRNP200 EMBL:AK303465 IPI:IPI00927472
SMR:B4E0P5 STRING:B4E0P5 Ensembl:ENST00000429650
HOGENOM:HOG000031250 HOVERGEN:HBG078981 Uniprot:B4E0P5
Length = 595
Score = 124 (48.7 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 45/159 (28%), Positives = 72/159 (45%)
Query: 330 QPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIE-LML 388
+PVIVF SR++ ++ +D T D Q F + C E+D +P +E L
Sbjct: 84 KPVIVFVPSRKQTR-----LTAIDILTTCAADIQRQRF---LHC-TEKDL-IPYLEKLSD 133
Query: 389 PLLKR----GIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAV 444
LK G+ H GL P+ + LVE LF G ++ + A+ + G+N+ A V+
Sbjct: 134 STLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDT 193
Query: 445 KKWDGDSHRYIGSGEY--IQMSXXXXXXXXXXXXICIIM 481
+ ++G H Y+ Y +QM C+IM
Sbjct: 194 QYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIM 232
Score = 57 (25.1 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 214 IKMVFLSATMSNATQFAEWI-CHLHKQPCHVVYTDFRPTPLQHYV 257
I++V LS+++SNA A W+ C + + RP PL+ ++
Sbjct: 12 IRIVALSSSLSNAKDVAHWLGCSATST--FNFHPNVRPVPLELHI 54
Score = 38 (18.4 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 8/46 (17%), Positives = 24/46 (52%)
Query: 708 RCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHID 753
RC + E +I +++ + R++ +Q ++ + +R + +I+
Sbjct: 500 RCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIE 545
>UNIPROTKB|I3LAA7 [details] [associations]
symbol:I3LAA7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GeneTree:ENSGT00700000104562 GO:GO:0008026
Ensembl:ENSSSCT00000023674 OMA:ENDQDET Uniprot:I3LAA7
Length = 268
Score = 97 (39.2 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 38/131 (29%), Positives = 63/131 (48%)
Query: 144 KDVGLMTGDVTLS----PNASCLVMTTEILRGML--YRGSEVLKEVAWVIFDEIHYMKDR 197
K V +TGDVT A +V T E G+ ++ +K+V +I DEIH + +
Sbjct: 14 KKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGE- 72
Query: 198 ERGVVWEESII---FLPP----AIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP 250
ERG V E + F+ +++V LS ++NA A+W+ ++ + RP
Sbjct: 73 ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWL-NIRQMGLFNFRPSVRP 131
Query: 251 TPLQHYV--FP 259
PL+ ++ FP
Sbjct: 132 VPLEVHIQGFP 142
Score = 70 (29.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 27/97 (27%), Positives = 46/97 (47%)
Query: 330 QPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTV---EQVFQNAVDCLNEEDRNLPAIEL 386
+PV++F SRR+ A+ + ++ K + E+ +N + + D NL +L
Sbjct: 168 KPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEREMENIIGTIR--DSNL---KL 222
Query: 387 MLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALF 423
L GI +HH+GL ++ VE LF V+ F
Sbjct: 223 TLAF---GIGMHHAGLHERDRKTVEELFVNCKVQVYF 256
>UNIPROTKB|F1RVE2 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
OMA:SRPLENC EMBL:CU467102 EMBL:CU468150 Ensembl:ENSSSCT00000010115
Uniprot:F1RVE2
Length = 1103
Score = 105 (42.0 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 32/114 (28%), Positives = 59/114 (51%)
Query: 333 IVFSFSRRECEQHAMSMSKL---DFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLP 389
+VF +++ CE A + K+ ++ EK+ E + +N + ++ P ++ +P
Sbjct: 583 LVFCPTKKNCENVAEMICKILSKEYLKHREKEKHE-LLKN-LKAISGGSV-CPVLKHTIP 639
Query: 390 LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA 443
G+A HHSGL ++L+E G++ L T T A G+N+PA+ V+ A
Sbjct: 640 F---GVAYHHSGLTNDERKLLEEAHSAGVLCLLTCTSTLAAGVNLPAQRVILRA 690
Score = 77 (32.2 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 53/274 (19%), Positives = 112/274 (40%)
Query: 3 ESLMAGKRKAPEEDLHVTGTPEEESTKKQRNLTRSCVHEVAVPSGYALTKDEAIHGTFAN 62
+S MAG +A T +E ++ N+ + + + G + + +A
Sbjct: 272 KSAMAGNARAHTSVFSRTKQLKETLLSEEINVAKKTIASSSDDLGPFYSLPSKVRDLYAQ 331
Query: 63 PVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQR- 121
+ G + K Y ++ +++ ++ ++++ S TS GKT VAE + +++
Sbjct: 332 --FRG-IEKLYEWQ---HTCLTLKSVQERKNLIYSLPTSGGKTLVAEILMLQELLCRRKD 385
Query: 122 VIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLS----P------NASCLVMTTE---- 167
+ P A+ +K L ++G + S P S + T E
Sbjct: 386 ALMILPYVAIVQEKIAGLSSFGIELGFFVEEYAGSKGKFPPIKRREKKSLYIATIEKGHS 445
Query: 168 ILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES---IIFLPPAIKMVFLSATMS 224
++ ++ G + + V+ DE+H + + RG E + I++ ++V +SAT++
Sbjct: 446 LVNSLIETGR--IGGLGLVVVDELHMIGEGSRGATLEMTLAKILYTSKTTQIVGMSATLN 503
Query: 225 NATQFAEWICHLHKQPCHVVYTD-FRPTPLQHYV 257
N + L + Y+ FRP L+ Y+
Sbjct: 504 NVEDLQAF---LRAE----YYSSWFRPVELKEYL 530
>UNIPROTKB|I3LAH4 [details] [associations]
symbol:I3LAH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
GeneTree:ENSGT00640000091272 EMBL:CU104757
Ensembl:ENSSSCT00000025204 OMA:FMKEGSA Uniprot:I3LAH4
Length = 197
Score = 114 (45.2 bits), Expect = 0.00056, P = 0.00056
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 390 LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440
L G ++HH+G+L + LVE LF G +K L T T A G+N+PA V+
Sbjct: 134 LFPDGFSIHHAGMLRQDRNLVESLFSNGHIKVLVCTATLAWGVNLPAHAVI 184
>UNIPROTKB|I3LT20 [details] [associations]
symbol:LOC100525691 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
GeneTree:ENSGT00640000091272 GO:GO:0008026 EMBL:CU896688
Ensembl:ENSSSCT00000023488 Uniprot:I3LT20
Length = 354
Score = 119 (46.9 bits), Expect = 0.00075, P = 0.00075
Identities = 39/141 (27%), Positives = 74/141 (52%)
Query: 78 DPFQ-RVSVACLERNESVLVSAHTSAGKTAVAEYAIA-MAFRDKQ-RVIYTSPLKALSNQ 134
+P Q +V +++V V A T +GKT AE+AI M ++ + R +Y +P++AL+ Q
Sbjct: 163 NPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQ 222
Query: 135 KYRELHQEFKD-----VGLMTG----DVTLSPNASCLVMTTEI--LRGMLYRGSEVLKEV 183
Y + +++F+D V L+TG D+ L + ++ T E + ++ + ++ +
Sbjct: 223 VYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNI 282
Query: 184 AWVIFDEIHYMKDRERGVVWE 204
+ DE+H + E G V E
Sbjct: 283 NLFVVDEVHLIGG-ENGPVLE 302
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 931 881 0.00086 122 3 11 22 0.38 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 136
No. of states in DFA: 619 (66 KB)
Total size of DFA: 394 KB (2193 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 82.16u 0.07s 82.23t Elapsed: 00:00:26
Total cpu time: 82.23u 0.07s 82.30t Elapsed: 00:00:26
Start: Mon May 20 14:54:12 2013 End: Mon May 20 14:54:38 2013
WARNINGS ISSUED: 1