Query 002359
Match_columns 931
No_of_seqs 464 out of 3552
Neff 8.6
Searched_HMMs 13730
Date Mon Mar 25 23:08:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002359.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/002359hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bmfa2 c.37.1.14 (A:178-482) 100.0 8.1E-33 5.9E-37 301.1 21.3 280 88-482 6-299 (305)
2 d1veca_ c.37.1.19 (A:) DEAD bo 100.0 2.3E-28 1.7E-32 248.7 20.8 172 70-243 18-205 (206)
3 d2j0sa1 c.37.1.19 (A:22-243) P 100.0 7.5E-29 5.4E-33 254.3 15.7 172 71-244 33-219 (222)
4 d2g9na1 c.37.1.19 (A:21-238) I 100.0 2.8E-28 2E-32 249.9 18.4 173 71-245 28-216 (218)
5 d1t6na_ c.37.1.19 (A:) Spliceo 100.0 3.8E-28 2.8E-32 247.3 17.6 172 71-244 17-206 (207)
6 d1hv8a1 c.37.1.19 (A:3-210) Pu 99.9 2.1E-27 1.5E-31 242.2 16.7 171 71-243 20-204 (208)
7 d1qdea_ c.37.1.19 (A:) Initiat 99.9 3.2E-27 2.3E-31 241.0 18.0 171 71-243 26-210 (212)
8 d2p6ra3 c.37.1.19 (A:1-202) He 99.9 6.8E-27 5E-31 237.8 16.3 167 68-234 16-193 (202)
9 d2p6ra4 c.37.1.19 (A:203-403) 99.9 4.4E-26 3.2E-30 230.0 16.8 172 316-498 28-199 (201)
10 d1wrba1 c.37.1.19 (A:164-401) 99.9 1.9E-25 1.4E-29 232.0 22.0 173 70-244 36-236 (238)
11 d1s2ma1 c.37.1.19 (A:46-251) P 99.9 6.8E-26 5E-30 230.7 18.2 172 70-243 16-202 (206)
12 d1q0ua_ c.37.1.19 (A:) Probabl 99.9 3.1E-25 2.2E-29 226.8 17.6 173 70-244 16-207 (209)
13 d1oywa2 c.37.1.19 (A:1-206) Re 99.9 1.3E-23 9.3E-28 214.1 11.4 166 67-235 15-198 (206)
14 d1wp9a1 c.37.1.19 (A:1-200) pu 99.9 4.8E-22 3.5E-26 201.3 19.6 163 73-236 6-180 (200)
15 d1gkub1 c.37.1.16 (B:1-250) He 99.9 1.8E-22 1.3E-26 210.3 14.1 146 76-227 43-218 (237)
16 d1oywa3 c.37.1.19 (A:207-406) 99.9 1.4E-21 1E-25 196.0 16.8 134 315-498 16-149 (200)
17 d1fuka_ c.37.1.19 (A:) Initiat 99.8 1.2E-21 9E-26 190.1 12.2 127 316-492 14-140 (162)
18 d2j0sa2 c.37.1.19 (A:244-411) 99.8 2.8E-21 2.1E-25 188.6 14.4 127 316-492 21-147 (168)
19 d1s2ma2 c.37.1.19 (A:252-422) 99.8 7E-21 5.1E-25 186.9 15.0 122 315-485 18-139 (171)
20 d1hv8a2 c.37.1.19 (A:211-365) 99.8 1.7E-20 1.3E-24 181.0 15.3 127 315-492 15-141 (155)
21 d1c4oa2 c.37.1.19 (A:410-583) 99.8 1.8E-20 1.3E-24 180.8 15.3 124 316-485 16-142 (174)
22 d1t5ia_ c.37.1.19 (A:) Spliceo 99.8 7.1E-21 5.2E-25 186.0 12.4 123 314-485 12-134 (168)
23 d2rb4a1 c.37.1.19 (A:307-474) 99.8 3.3E-20 2.4E-24 181.1 14.7 131 317-493 20-152 (168)
24 d1t5la2 c.37.1.19 (A:415-595) 99.8 5E-20 3.7E-24 180.8 14.9 124 316-485 16-142 (181)
25 d2fz4a1 c.37.1.19 (A:24-229) D 99.8 1.3E-18 9.5E-23 176.2 15.8 139 72-223 66-205 (206)
26 d1rifa_ c.37.1.23 (A:) DNA hel 99.8 1.2E-18 9E-23 184.6 15.3 147 74-227 111-266 (282)
27 d2eyqa3 c.37.1.19 (A:546-778) 99.8 4.6E-18 3.4E-22 172.4 18.0 152 65-226 44-216 (233)
28 d1yksa1 c.37.1.14 (A:185-324) 99.7 1.1E-18 8.3E-23 164.8 10.1 135 88-224 4-140 (140)
29 d1jr6a_ c.37.1.14 (A:) HCV hel 99.7 5.5E-19 4E-23 165.2 6.9 101 328-483 34-134 (138)
30 d1gm5a3 c.37.1.19 (A:286-549) 99.7 1.6E-18 1.2E-22 179.2 11.0 152 65-226 72-244 (264)
31 d1a1va1 c.37.1.14 (A:190-325) 99.7 3.6E-17 2.6E-21 154.0 12.8 127 90-223 7-136 (136)
32 d1wp9a2 c.37.1.19 (A:201-486) 99.6 7.7E-16 5.6E-20 164.1 12.3 118 326-485 158-275 (286)
33 d2fwra1 c.37.1.19 (A:257-456) 99.6 1.4E-15 1.1E-19 152.8 8.7 117 316-484 80-197 (200)
34 d1gm5a4 c.37.1.19 (A:550-755) 99.5 3.2E-15 2.3E-19 148.5 7.0 82 395-485 67-148 (206)
35 d1a1va2 c.37.1.14 (A:326-624) 99.5 1.4E-15 1E-19 155.9 3.7 99 329-475 36-147 (299)
36 d2eyqa5 c.37.1.19 (A:779-989) 99.5 1.8E-13 1.3E-17 134.2 14.8 112 328-485 30-141 (211)
37 d1gkub2 c.37.1.16 (B:251-498) 99.4 3.4E-14 2.5E-18 147.7 1.5 104 320-483 17-125 (248)
38 d1z63a1 c.37.1.19 (A:432-661) 99.2 5.9E-11 4.3E-15 121.3 16.4 153 76-235 12-176 (230)
39 d1z3ix2 c.37.1.19 (X:92-389) R 99.2 8.2E-11 6E-15 125.2 17.3 143 76-224 55-231 (298)
40 d1yksa2 c.37.1.14 (A:325-623) 99.1 7.4E-11 5.4E-15 123.6 10.1 100 329-472 36-146 (299)
41 d1z3ix1 c.37.1.19 (X:390-735) 99.1 3.5E-10 2.5E-14 121.8 15.5 120 319-485 108-230 (346)
42 d1z5za1 c.37.1.19 (A:663-906) 99.0 5.4E-10 3.9E-14 115.0 11.1 123 316-485 70-197 (244)
43 d1tf5a4 c.37.1.19 (A:396-570) 98.6 8E-08 5.8E-12 90.5 12.1 119 318-485 21-149 (175)
44 d1tf5a3 c.37.1.19 (A:1-226,A:3 98.1 4.6E-06 3.4E-10 83.3 9.3 127 69-197 73-216 (273)
45 d1w36d1 c.37.1.19 (D:2-360) Ex 98.0 2.1E-05 1.5E-09 84.1 13.3 138 77-220 149-295 (359)
46 d1nkta3 c.37.1.19 (A:-15-225,A 97.9 7.7E-06 5.6E-10 82.0 8.0 123 71-195 92-230 (288)
47 d1nkta4 c.37.1.19 (A:397-615) 97.7 0.00014 1E-08 69.1 13.0 77 316-434 19-98 (219)
48 d1uaaa1 c.37.1.19 (A:2-307) DE 97.3 0.00011 8E-09 76.6 6.8 84 76-171 1-88 (306)
49 d1pjra1 c.37.1.19 (A:1-318) DE 97.0 0.00051 3.7E-08 71.9 8.2 84 76-172 11-98 (318)
50 d1a5ta2 c.37.1.20 (A:1-207) de 96.3 0.0043 3.1E-07 60.3 8.9 133 76-222 2-147 (207)
51 d1t5la1 c.37.1.19 (A:2-414) Nu 96.3 0.0038 2.8E-07 66.9 8.7 73 70-145 5-82 (413)
52 g1qhh.1 c.37.1.19 (A:,B:,C:,D: 95.8 0.0065 4.7E-07 69.4 8.2 82 76-170 11-96 (623)
53 d2eyqa5 c.37.1.19 (A:779-989) 95.5 0.014 9.9E-07 55.9 8.0 80 110-195 22-114 (211)
54 d1l8qa2 c.37.1.20 (A:77-289) C 95.2 0.059 4.3E-06 52.1 11.8 99 93-224 38-141 (213)
55 d2gnoa2 c.37.1.20 (A:11-208) g 94.7 0.066 4.8E-06 51.0 10.5 108 81-223 2-119 (198)
56 d1gm5a3 c.37.1.19 (A:286-549) 94.6 0.1 7.4E-06 51.8 11.9 94 327-465 130-224 (264)
57 d1ls1a2 c.37.1.10 (A:89-295) G 94.5 0.09 6.5E-06 50.3 10.7 119 94-226 13-137 (207)
58 d1ofha_ c.37.1.20 (A:) HslU {H 94.2 0.027 1.9E-06 58.1 6.7 19 90-108 48-66 (309)
59 d2eyqa3 c.37.1.19 (A:546-778) 94.1 0.22 1.6E-05 48.3 12.7 94 327-465 102-196 (233)
60 d2b8ta1 c.37.1.24 (A:11-149) T 93.4 0.17 1.2E-05 45.0 9.7 89 94-196 5-93 (139)
61 d1j8yf2 c.37.1.10 (F:87-297) G 93.2 0.35 2.6E-05 46.0 12.3 117 94-224 15-139 (211)
62 d1sxjb2 c.37.1.20 (B:7-230) Re 93.2 0.044 3.2E-06 53.3 5.9 43 181-224 100-142 (224)
63 d1njfa_ c.37.1.20 (A:) delta p 93.1 0.12 8.6E-06 50.7 9.0 23 93-116 36-58 (239)
64 d1sxje2 c.37.1.20 (E:4-255) Re 92.9 0.059 4.3E-06 53.2 6.5 41 181-222 130-170 (252)
65 d2qy9a2 c.37.1.10 (A:285-495) 92.8 0.24 1.7E-05 47.2 10.4 117 94-225 12-141 (211)
66 d1sxja2 c.37.1.20 (A:295-547) 92.5 0.15 1.1E-05 50.2 8.9 42 182-224 123-165 (253)
67 d1d2na_ c.37.1.20 (A:) Hexamer 92.1 0.21 1.6E-05 49.0 9.3 17 92-108 41-57 (246)
68 d1ye8a1 c.37.1.11 (A:1-178) Hy 91.8 0.14 1E-05 47.2 7.1 54 180-234 97-150 (178)
69 d1sxjd2 c.37.1.20 (D:26-262) R 91.8 0.09 6.6E-06 51.2 6.1 17 92-108 34-50 (237)
70 d1sxjc2 c.37.1.20 (C:12-238) R 91.5 0.24 1.8E-05 47.7 8.9 40 180-220 97-136 (227)
71 d1jbka_ c.37.1.20 (A:) ClpB, A 91.4 0.73 5.3E-05 43.0 11.7 109 84-192 34-186 (195)
72 d1g6oa_ c.37.1.11 (A:) Hexamer 91.4 0.045 3.3E-06 56.5 3.3 90 81-192 155-245 (323)
73 d1c4oa1 c.37.1.19 (A:2-409) Nu 91.4 0.28 2E-05 51.9 9.8 67 76-145 8-79 (408)
74 d1xbta1 c.37.1.24 (A:18-150) T 91.3 0.34 2.5E-05 42.5 8.8 40 91-130 2-41 (133)
75 d1ixza_ c.37.1.20 (A:) AAA dom 91.3 0.1 7.6E-06 51.4 5.9 34 92-128 43-76 (247)
76 d1xx6a1 c.37.1.24 (A:2-142) Th 91.2 0.4 2.9E-05 42.4 9.2 88 91-196 7-94 (141)
77 d1okkd2 c.37.1.10 (D:97-303) G 90.1 0.14 9.9E-06 48.9 5.2 123 91-226 6-139 (207)
78 d1iqpa2 c.37.1.20 (A:2-232) Re 89.7 0.45 3.3E-05 45.8 9.1 18 92-109 46-63 (231)
79 d1p9ra_ c.37.1.11 (A:) Extrace 88.7 0.18 1.3E-05 53.6 5.4 40 77-117 142-183 (401)
80 d1tf7a2 c.37.1.11 (A:256-497) 88.6 0.18 1.3E-05 49.2 5.0 39 90-128 25-63 (242)
81 d1c4oa2 c.37.1.19 (A:410-583) 88.5 0.56 4.1E-05 43.0 8.0 75 112-192 24-109 (174)
82 d1ixsb2 c.37.1.20 (B:4-242) Ho 88.4 0.41 3E-05 46.4 7.6 17 92-108 36-52 (239)
83 d2i3ba1 c.37.1.11 (A:1-189) Ca 88.2 0.17 1.3E-05 46.5 4.4 31 92-122 2-32 (189)
84 d1w5sa2 c.37.1.20 (A:7-293) CD 87.7 0.22 1.6E-05 49.5 5.1 17 94-110 49-65 (287)
85 d1e9ra_ c.37.1.11 (A:) Bacteri 87.1 0.24 1.8E-05 52.9 5.4 43 90-132 49-91 (433)
86 d1vmaa2 c.37.1.10 (A:82-294) G 87.1 0.25 1.8E-05 47.2 4.8 116 93-224 13-142 (213)
87 d1fnna2 c.37.1.20 (A:1-276) CD 86.9 0.8 5.8E-05 44.7 9.0 92 92-196 44-138 (276)
88 d2p6ra2 a.289.1.2 (A:489-686) 85.1 0.44 3.2E-05 44.7 5.3 72 853-924 73-144 (198)
89 d1cr2a_ c.37.1.11 (A:) Gene 4 84.8 0.4 2.9E-05 47.7 5.3 41 88-128 32-73 (277)
90 d1r6bx2 c.37.1.20 (X:169-436) 84.6 1.1 7.8E-05 44.2 8.3 111 82-192 28-182 (268)
91 d1g41a_ c.37.1.20 (A:) HslU {H 83.4 0.21 1.6E-05 53.5 2.5 19 91-109 49-67 (443)
92 d1w44a_ c.37.1.11 (A:) NTPase 82.7 0.56 4.1E-05 47.6 5.3 16 93-108 125-140 (321)
93 d1u94a1 c.37.1.11 (A:6-268) Re 80.9 0.69 5.1E-05 45.6 5.1 53 84-136 41-99 (263)
94 d1tf7a1 c.37.1.11 (A:14-255) C 80.2 0.64 4.6E-05 44.5 4.6 39 90-128 25-64 (242)
95 d1kaga_ c.37.1.2 (A:) Shikimat 79.7 0.49 3.6E-05 42.2 3.3 20 91-110 2-21 (169)
96 d1pzna2 c.37.1.11 (A:96-349) D 78.7 0.79 5.8E-05 44.3 4.8 52 90-141 35-92 (254)
97 d1g5ta_ c.37.1.11 (A:) ATP:cor 78.5 2.7 0.0002 37.4 7.9 124 94-224 5-138 (157)
98 d1y63a_ c.37.1.1 (A:) Probable 78.4 0.49 3.6E-05 42.9 2.9 20 91-110 5-24 (174)
99 d1np6a_ c.37.1.10 (A:) Molybdo 78.1 0.94 6.9E-05 40.6 4.8 36 93-128 4-39 (170)
100 d1t5la2 c.37.1.19 (A:415-595) 77.7 2.1 0.00015 39.4 7.1 77 112-194 24-111 (181)
101 d1zp6a1 c.37.1.25 (A:6-181) Hy 77.4 0.38 2.8E-05 43.8 1.7 19 90-108 3-21 (176)
102 d1um8a_ c.37.1.20 (A:) ClpX {H 76.8 0.62 4.5E-05 48.4 3.4 18 91-108 68-85 (364)
103 d1rkba_ c.37.1.1 (A:) Adenylat 76.1 0.76 5.5E-05 41.4 3.5 20 92-111 5-24 (173)
104 d1khta_ c.37.1.1 (A:) Adenylat 76.1 1 7.4E-05 41.0 4.5 35 91-125 1-35 (190)
105 d2bdta1 c.37.1.25 (A:1-176) Hy 75.9 0.52 3.8E-05 42.5 2.2 17 93-109 4-20 (176)
106 d1mo6a1 c.37.1.11 (A:1-269) Re 75.7 1.5 0.00011 43.2 5.7 49 91-139 60-108 (269)
107 d1ly1a_ c.37.1.1 (A:) Polynucl 75.4 0.55 4E-05 41.6 2.2 17 93-109 4-20 (152)
108 d1in4a2 c.37.1.20 (A:17-254) H 75.0 0.83 6.1E-05 44.0 3.6 18 92-109 36-53 (238)
109 d1szpa2 c.37.1.11 (A:145-395) 74.7 0.67 4.9E-05 44.6 2.8 41 90-130 33-79 (251)
110 d1gvnb_ c.37.1.21 (B:) Plasmid 74.5 1 7.4E-05 44.1 4.2 32 93-127 34-65 (273)
111 d1byia_ c.37.1.10 (A:) Dethiob 74.3 1.1 8.1E-05 42.1 4.3 36 92-127 2-38 (224)
112 d1xp8a1 c.37.1.11 (A:15-282) R 73.7 1.4 0.00011 43.3 5.0 96 84-195 44-148 (268)
113 d1qvra2 c.37.1.20 (A:149-535) 73.5 8.6 0.00063 39.5 11.5 111 81-192 31-185 (387)
114 d1lv7a_ c.37.1.20 (A:) AAA dom 72.6 1.6 0.00012 42.7 5.1 34 91-127 45-78 (256)
115 d1lw7a2 c.37.1.1 (A:220-411) T 72.6 0.52 3.8E-05 43.0 1.3 18 92-109 8-25 (192)
116 d1v5wa_ c.37.1.11 (A:) Meiotic 72.3 1.5 0.00011 42.1 4.9 54 90-143 36-95 (258)
117 d1m8pa3 c.37.1.15 (A:391-573) 72.3 0.68 5E-05 42.0 2.1 20 89-108 4-23 (183)
118 d1w36b1 c.37.1.19 (B:1-485) Ex 72.0 2.5 0.00018 44.9 7.1 53 92-144 17-81 (485)
119 d1r7ra3 c.37.1.20 (A:471-735) 70.9 2.9 0.00021 40.9 6.7 34 91-127 41-74 (265)
120 d1viaa_ c.37.1.2 (A:) Shikimat 70.1 0.91 6.7E-05 40.9 2.4 19 92-110 1-19 (161)
121 d2hyda1 c.37.1.12 (A:324-578) 70.1 0.86 6.3E-05 44.6 2.3 19 89-107 42-60 (255)
122 d1qhxa_ c.37.1.3 (A:) Chloramp 69.9 0.92 6.7E-05 40.9 2.4 20 90-109 2-21 (178)
123 d2pmka1 c.37.1.12 (A:467-707) 69.9 1.2 8.7E-05 43.1 3.3 20 89-108 27-46 (241)
124 d1nksa_ c.37.1.1 (A:) Adenylat 69.5 1.7 0.00013 39.5 4.3 34 94-127 4-37 (194)
125 d1n0wa_ c.37.1.11 (A:) DNA rep 68.9 1.1 8.2E-05 41.8 2.9 26 90-115 22-47 (242)
126 d1ak2a1 c.37.1.1 (A:14-146,A:1 67.5 1.7 0.00012 40.0 3.8 22 90-111 2-23 (190)
127 d2i1qa2 c.37.1.11 (A:65-322) D 67.5 0.87 6.4E-05 43.7 1.7 27 90-116 33-59 (258)
128 d1e32a2 c.37.1.20 (A:201-458) 67.5 1.7 0.00013 42.4 4.0 35 91-128 38-72 (258)
129 d1gm5a4 c.37.1.19 (A:550-755) 67.1 0.83 6E-05 43.1 1.4 80 110-195 20-121 (206)
130 d1zaka1 c.37.1.1 (A:3-127,A:15 66.4 1.2 9.1E-05 41.0 2.5 19 92-110 4-22 (189)
131 d1knqa_ c.37.1.17 (A:) Glucona 66.0 1.1 7.9E-05 40.3 2.0 19 92-110 7-25 (171)
132 d1e6ca_ c.37.1.2 (A:) Shikimat 65.2 1.9 0.00014 38.8 3.6 21 92-112 3-23 (170)
133 d1rz3a_ c.37.1.6 (A:) Hypothet 65.2 2.6 0.00019 38.4 4.7 15 95-109 26-40 (198)
134 d1zina1 c.37.1.1 (A:1-125,A:16 64.7 1.8 0.00013 39.2 3.4 18 93-110 2-19 (182)
135 d2cdna1 c.37.1.1 (A:1-181) Ade 62.7 2.1 0.00015 38.9 3.4 19 93-111 2-20 (181)
136 d1x6va3 c.37.1.4 (A:34-228) Ad 62.6 1.8 0.00013 39.6 2.9 19 91-109 19-37 (195)
137 d1g8pa_ c.37.1.20 (A:) ATPase 62.5 1.3 9.8E-05 45.0 2.1 19 90-108 27-45 (333)
138 d1e4va1 c.37.1.1 (A:1-121,A:15 62.3 2.1 0.00015 38.8 3.3 19 93-111 2-20 (179)
139 d1s3ga1 c.37.1.1 (A:1-125,A:16 62.1 2.2 0.00016 38.9 3.4 20 93-112 2-21 (182)
140 d1fuka_ c.37.1.19 (A:) Initiat 61.3 10 0.00073 33.6 7.8 67 118-190 26-103 (162)
141 d3adka_ c.37.1.1 (A:) Adenylat 61.1 2.9 0.00021 38.5 4.1 22 88-109 5-26 (194)
142 d1znwa1 c.37.1.1 (A:20-201) Gu 61.0 2.5 0.00018 38.6 3.5 18 91-108 2-19 (182)
143 d1qf9a_ c.37.1.1 (A:) UMP/CMP 60.7 2.3 0.00017 39.1 3.3 20 93-112 8-27 (194)
144 d1gkya_ c.37.1.1 (A:) Guanylat 60.2 2.5 0.00018 38.8 3.4 17 92-108 2-18 (186)
145 d1ny5a2 c.37.1.20 (A:138-384) 60.0 4.2 0.00031 39.2 5.2 21 89-109 21-41 (247)
146 d1jr6a_ c.37.1.14 (A:) HCV hel 59.2 6.7 0.00049 33.9 5.9 64 117-187 33-100 (138)
147 d1ukza_ c.37.1.1 (A:) Uridylat 59.2 2.3 0.00016 39.3 2.9 19 93-111 10-28 (196)
148 d1s96a_ c.37.1.1 (A:) Guanylat 59.1 2.8 0.0002 39.3 3.6 19 90-108 1-19 (205)
149 d1yj5a2 c.37.1.1 (A:351-522) 5 58.7 1.9 0.00014 39.2 2.2 17 92-108 15-31 (172)
150 d1xjca_ c.37.1.10 (A:) Molybdo 58.2 4.6 0.00033 35.9 4.8 32 95-126 5-36 (165)
151 d1teva_ c.37.1.1 (A:) UMP/CMP 57.8 2.9 0.00021 38.4 3.4 18 93-110 3-20 (194)
152 d1svma_ c.37.1.20 (A:) Papillo 56.1 4.8 0.00035 41.2 5.1 33 91-126 154-186 (362)
153 d1nlfa_ c.37.1.11 (A:) Hexamer 55.5 4.9 0.00036 38.9 4.9 54 88-143 26-90 (274)
154 d1lvga_ c.37.1.1 (A:) Guanylat 55.2 3.6 0.00026 37.8 3.6 16 93-108 2-17 (190)
155 d2ak3a1 c.37.1.1 (A:0-124,A:16 55.0 3.6 0.00027 37.7 3.6 20 91-110 6-25 (189)
156 d2iyva1 c.37.1.2 (A:2-166) Shi 54.5 3.7 0.00027 36.6 3.5 19 93-111 3-21 (165)
157 d1akya1 c.37.1.1 (A:3-130,A:16 54.2 3.6 0.00026 37.3 3.4 20 92-111 3-22 (180)
158 d1oywa3 c.37.1.19 (A:207-406) 53.8 12 0.00085 34.5 7.1 65 117-187 28-103 (200)
159 d1bifa1 c.37.1.7 (A:37-249) 6- 52.7 5.9 0.00043 36.4 4.8 15 94-108 5-19 (213)
160 d1uj2a_ c.37.1.6 (A:) Uridine- 51.6 2.8 0.00021 39.1 2.2 15 94-108 5-19 (213)
161 d2j0sa2 c.37.1.19 (A:244-411) 51.1 15 0.0011 32.6 7.2 66 117-188 32-108 (168)
162 d1s2ma2 c.37.1.19 (A:252-422) 50.9 15 0.0011 32.6 7.3 66 117-188 30-106 (171)
163 d1hv8a2 c.37.1.19 (A:211-365) 50.7 16 0.0012 31.8 7.2 64 118-187 27-101 (155)
164 d1qvra3 c.37.1.20 (A:536-850) 49.4 4.6 0.00033 40.5 3.5 17 93-109 55-71 (315)
165 d1nn5a_ c.37.1.1 (A:) Thymidyl 49.2 8.1 0.00059 35.9 5.1 39 90-128 2-41 (209)
166 d1kgda_ c.37.1.1 (A:) Guanylat 48.8 3.7 0.00027 37.3 2.5 17 92-108 4-20 (178)
167 d1yrba1 c.37.1.10 (A:1-244) AT 47.3 7.4 0.00054 36.6 4.6 31 94-125 3-33 (244)
168 d1ihua1 c.37.1.10 (A:1-296) Ar 46.8 7.8 0.00057 37.8 4.9 35 92-126 9-43 (296)
169 d1ckea_ c.37.1.1 (A:) CMP kina 46.8 5.4 0.00039 37.1 3.4 20 94-113 6-25 (225)
170 d1r6bx3 c.37.1.20 (X:437-751) 46.5 3.7 0.00027 41.2 2.2 17 93-109 54-70 (315)
171 d1t5ia_ c.37.1.19 (A:) Spliceo 45.4 15 0.0011 32.6 6.1 66 118-189 26-102 (168)
172 d1yksa2 c.37.1.14 (A:325-623) 44.8 13 0.00096 36.6 6.1 49 118-166 35-90 (299)
173 d1xpua3 c.37.1.11 (A:129-417) 44.3 17 0.0012 35.5 6.7 31 80-110 29-62 (289)
174 d1m7ga_ c.37.1.4 (A:) Adenosin 44.1 8.1 0.00059 35.9 4.1 20 89-108 22-41 (208)
175 d1jj7a_ c.37.1.12 (A:) Peptide 44.0 4.1 0.0003 39.4 2.0 20 89-108 38-57 (251)
176 d4tmka_ c.37.1.1 (A:) Thymidyl 42.6 16 0.0011 33.5 6.1 35 90-124 1-35 (210)
177 d1q3ta_ c.37.1.1 (A:) CMP kina 42.5 6.9 0.0005 36.4 3.4 19 94-112 6-24 (223)
178 d1odfa_ c.37.1.6 (A:) Hypothet 41.5 9.3 0.00068 37.4 4.3 13 96-108 32-44 (286)
179 d1a7ja_ c.37.1.6 (A:) Phosphor 41.3 6.7 0.00048 38.5 3.1 15 94-108 7-21 (288)
180 d1rp3a2 a.4.13.2 (A:164-234) S 41.0 17 0.0013 26.7 4.9 46 851-896 22-68 (71)
181 d1nyta1 c.2.1.7 (A:102-271) Sh 40.3 21 0.0016 31.5 6.4 72 89-166 16-88 (170)
182 d3b60a1 c.37.1.12 (A:329-581) 40.0 5 0.00036 38.8 1.9 20 89-108 39-58 (253)
183 d2jdid3 c.37.1.11 (D:82-357) C 40.0 20 0.0014 34.7 6.4 33 83-115 57-92 (276)
184 d1gsia_ c.37.1.1 (A:) Thymidyl 39.9 13 0.00092 34.0 4.9 35 94-128 3-38 (208)
185 d1sgwa_ c.37.1.12 (A:) Putativ 39.8 6.5 0.00047 36.4 2.6 20 89-108 25-44 (200)
186 d1ihua2 c.37.1.10 (A:308-586) 39.2 12 0.00086 36.1 4.7 37 89-125 17-54 (279)
187 d2g7sa1 a.4.1.9 (A:3-76) Putat 38.8 8 0.00058 29.1 2.6 35 864-898 23-57 (74)
188 d1lnwa_ a.4.5.28 (A:) MexR rep 38.6 30 0.0022 29.3 6.9 62 822-891 15-76 (141)
189 d1l2ta_ c.37.1.12 (A:) MJ0796 38.6 6.7 0.00049 37.2 2.5 19 89-107 29-47 (230)
190 d1bg2a_ c.37.1.9 (A:) Kinesin 37.7 9.6 0.0007 38.1 3.8 23 86-108 69-93 (323)
191 d2fnaa2 c.37.1.20 (A:1-283) Ar 37.1 13 0.00095 35.3 4.7 20 90-109 28-47 (283)
192 d1knxa2 c.91.1.2 (A:133-309) H 37.1 7.7 0.00056 35.1 2.6 20 90-109 14-33 (177)
193 d1mv5a_ c.37.1.12 (A:) Multidr 36.9 6.9 0.0005 37.4 2.3 20 89-108 26-45 (242)
194 d1g2912 c.37.1.12 (1:1-240) Ma 36.5 7.6 0.00055 37.0 2.5 19 89-107 27-45 (240)
195 d1i9ga_ c.66.1.13 (A:) Probabl 36.0 1.5E+02 0.011 27.8 12.3 116 89-233 94-213 (264)
196 d3dhwc1 c.37.1.12 (C:1-240) Me 35.8 5.8 0.00042 37.9 1.5 19 89-107 29-47 (240)
197 d1r0wa_ c.37.1.12 (A:) Cystic 35.4 9.4 0.00069 37.3 3.1 20 89-108 60-79 (281)
198 d1ku9a_ a.4.5.36 (A:) DNA-bind 35.3 22 0.0016 30.5 5.4 57 826-891 11-67 (151)
199 d1kkma_ c.91.1.2 (A:) HPr kina 34.5 9.3 0.00068 34.5 2.7 20 90-109 13-32 (176)
200 d1hv8a1 c.37.1.19 (A:3-210) Pu 34.1 37 0.0027 30.9 7.2 76 327-442 70-151 (208)
201 d1uf9a_ c.37.1.1 (A:) Dephosph 33.9 8.6 0.00063 34.8 2.4 16 95-110 7-22 (191)
202 d1sq5a_ c.37.1.6 (A:) Pantothe 33.6 15 0.0011 36.2 4.4 16 94-109 83-98 (308)
203 d1p4xa2 a.4.5.28 (A:126-250) S 33.5 27 0.002 29.1 5.5 50 833-891 25-75 (125)
204 d1ko7a2 c.91.1.2 (A:130-298) H 33.4 9.8 0.00071 34.1 2.6 19 90-108 14-32 (169)
205 d1g3qa_ c.37.1.10 (A:) Cell di 33.4 16 0.0011 33.9 4.4 31 95-125 7-37 (237)
206 d1htwa_ c.37.1.18 (A:) Hypothe 33.3 5.8 0.00042 35.2 1.0 40 92-134 34-73 (158)
207 d2vp4a1 c.37.1.1 (A:12-208) De 32.8 8.5 0.00062 34.9 2.2 16 93-108 11-26 (197)
208 d2awna2 c.37.1.12 (A:4-235) Ma 32.7 9.5 0.00069 36.1 2.5 19 89-107 24-42 (232)
209 d1z5za1 c.37.1.19 (A:663-906) 31.3 40 0.0029 31.5 7.1 56 99-154 65-121 (244)
210 d1v8ka_ c.37.1.9 (A:) Kinesin 31.3 15 0.0011 37.3 3.9 32 77-108 90-131 (362)
211 d1goja_ c.37.1.9 (A:) Kinesin 31.2 14 0.00099 37.4 3.7 21 87-107 74-96 (354)
212 d1fmca_ c.2.1.2 (A:) 7-alpha-h 31.0 74 0.0054 29.8 9.1 62 89-154 9-70 (255)
213 d1p77a1 c.2.1.7 (A:102-272) Sh 31.0 41 0.003 29.6 6.7 72 89-166 16-87 (171)
214 d1vhta_ c.37.1.1 (A:) Dephosph 30.9 11 0.00077 34.9 2.5 17 94-110 6-22 (208)
215 d1jjva_ c.37.1.1 (A:) Dephosph 30.6 11 0.00079 34.7 2.5 16 94-109 5-20 (205)
216 d1x88a1 c.37.1.9 (A:18-362) Ki 30.2 13 0.00093 37.5 3.2 22 86-107 74-97 (345)
217 d2zfia1 c.37.1.9 (A:4-352) Kin 29.9 14 0.001 37.3 3.4 22 86-107 80-103 (349)
218 d1v43a3 c.37.1.12 (A:7-245) Hy 29.9 11 0.00082 35.7 2.5 20 89-108 30-49 (239)
219 d1hyqa_ c.37.1.10 (A:) Cell di 29.3 23 0.0017 32.6 4.8 32 94-125 5-36 (232)
220 d1ji0a_ c.37.1.12 (A:) Branche 29.3 12 0.00085 35.6 2.5 20 89-108 30-49 (240)
221 d1sdma_ c.37.1.9 (A:) Kinesin 29.0 14 0.001 37.5 3.3 24 85-108 67-92 (364)
222 d1hsja1 a.4.5.28 (A:373-487) S 29.0 14 0.00099 30.6 2.6 39 853-891 35-74 (115)
223 d2p6ra4 c.37.1.19 (A:203-403) 28.9 34 0.0025 31.1 5.8 55 113-167 34-129 (201)
224 d3d31a2 c.37.1.12 (A:1-229) Su 28.8 8.7 0.00063 36.3 1.4 19 89-107 24-42 (229)
225 d1f9va_ c.37.1.9 (A:) Kinesin 28.8 15 0.0011 37.0 3.4 20 89-108 79-100 (342)
226 d1or7a1 a.4.13.2 (A:120-187) S 28.7 37 0.0027 24.7 4.9 46 851-896 19-65 (68)
227 d2ncda_ c.37.1.9 (A:) Kinesin 28.3 15 0.0011 37.4 3.3 23 85-107 117-141 (368)
228 d1oxxk2 c.37.1.12 (K:1-242) Gl 28.1 5.6 0.00041 38.1 -0.1 19 89-107 29-47 (242)
229 d2rb4a1 c.37.1.19 (A:307-474) 28.0 44 0.0032 29.2 6.3 65 118-188 31-106 (168)
230 d1geea_ c.2.1.2 (A:) Glucose d 27.4 86 0.0062 29.4 8.9 60 89-153 5-66 (261)
231 d1yb1a_ c.2.1.2 (A:) 17-beta-h 27.3 68 0.0049 29.9 8.0 84 89-187 5-89 (244)
232 d2fh5b1 c.37.1.8 (B:63-269) Si 27.1 13 0.00092 34.0 2.3 16 92-107 1-16 (207)
233 d1lnwa_ a.4.5.28 (A:) MexR rep 27.0 23 0.0016 30.2 3.9 61 736-800 64-134 (141)
234 d1b0ua_ c.37.1.12 (A:) ATP-bin 26.8 14 0.00099 35.6 2.5 20 89-108 26-45 (258)
235 d1s3ja_ a.4.5.28 (A:) Putative 26.7 26 0.0019 29.7 4.3 71 725-800 53-133 (143)
236 d1lkxa_ c.37.1.9 (A:) Myosin S 26.5 18 0.0013 40.1 3.8 37 77-113 67-108 (684)
237 d1d0xa2 c.37.1.9 (A:2-33,A:80- 26.2 19 0.0014 40.0 4.0 37 76-112 105-146 (712)
238 d1yb2a1 c.66.1.13 (A:6-255) Hy 26.1 1.7E+02 0.013 27.0 10.8 105 90-224 84-190 (250)
239 d2c07a1 c.2.1.2 (A:54-304) bet 25.9 82 0.006 29.3 8.4 84 90-188 9-93 (251)
240 d2b8ea1 c.108.1.7 (A:416-434,A 25.8 1.4E+02 0.0099 24.8 8.9 62 313-418 22-83 (135)
241 d2p67a1 c.37.1.10 (A:1-327) LA 25.7 27 0.002 34.6 4.7 15 94-108 57-71 (327)
242 g1xew.1 c.37.1.12 (X:,Y:) Smc 25.3 13 0.00095 36.7 2.2 16 93-108 28-43 (329)
243 d1x1ta1 c.2.1.2 (A:1-260) D(-) 25.2 84 0.0061 29.4 8.3 84 89-187 2-88 (260)
244 d2b2na1 c.37.1.19 (A:26-333) T 25.1 80 0.0058 30.6 8.2 29 117-145 12-40 (308)
245 d2rhca1 c.2.1.2 (A:5-261) beta 25.0 1.1E+02 0.008 28.4 9.2 82 91-187 2-84 (257)
246 d1w7ja2 c.37.1.9 (A:63-792) My 24.6 21 0.0015 39.9 4.0 36 77-112 75-115 (730)
247 d2mysa2 c.37.1.9 (A:4-33,A:80- 24.5 20 0.0015 40.4 3.8 37 76-112 103-144 (794)
248 d1l7vc_ c.37.1.12 (C:) ABC tra 24.3 12 0.00089 35.2 1.6 20 89-108 23-42 (231)
249 d1w1wa_ c.37.1.12 (A:) Smc hea 24.1 14 0.001 37.9 2.1 15 94-108 28-42 (427)
250 d1nija1 c.37.1.10 (A:2-223) Hy 24.1 24 0.0018 32.7 3.8 32 94-127 6-37 (222)
251 d2qm8a1 c.37.1.10 (A:5-327) Me 24.1 27 0.002 34.6 4.3 14 94-107 54-67 (323)
252 d2i10a1 a.4.1.9 (A:10-78) Puta 24.0 31 0.0023 25.1 3.7 49 864-916 19-67 (69)
253 d1br2a2 c.37.1.9 (A:80-789) My 23.8 22 0.0016 39.5 4.0 31 82-112 79-112 (710)
254 d1u0sy_ c.23.1.1 (Y:) CheY pro 23.8 1.7E+02 0.012 23.3 9.3 82 119-223 1-84 (118)
255 d1p5zb_ c.37.1.1 (B:) Deoxycyt 23.1 15 0.0011 34.2 2.1 18 91-108 2-19 (241)
256 d1cp2a_ c.37.1.10 (A:) Nitroge 23.1 33 0.0024 32.5 4.7 32 94-125 4-35 (269)
257 d1g0oa_ c.2.1.2 (A:) 1,3,8-tri 22.5 1.2E+02 0.0087 28.4 8.9 84 89-187 16-101 (272)
258 d1c9ka_ c.37.1.11 (A:) Adenosy 22.4 29 0.0021 31.1 3.7 42 94-139 2-43 (180)
259 d1a1va2 c.37.1.14 (A:326-624) 21.9 58 0.0042 31.4 6.1 52 118-169 35-89 (299)
260 d1g6ha_ c.37.1.12 (A:) MJ1267 21.9 19 0.0014 34.3 2.5 20 89-108 28-47 (254)
261 d2eyqa2 c.37.1.19 (A:349-465) 21.6 28 0.0021 28.6 3.3 38 317-355 23-60 (117)
262 d1kk8a2 c.37.1.9 (A:1-28,A:77- 21.5 23 0.0017 39.9 3.4 38 76-113 101-143 (789)
263 d2frha1 a.4.5.28 (A:102-216) P 21.4 53 0.0039 26.6 5.1 38 854-891 37-75 (115)
264 d2c0ga1 a.71.1.1 (A:1146-1251) 21.3 42 0.003 27.1 4.1 35 716-750 64-98 (106)
265 d2afhe1 c.37.1.10 (E:1-289) Ni 21.3 37 0.0027 32.5 4.7 31 94-125 5-36 (289)
266 d1urha2 c.46.1.2 (A:149-268) 3 21.1 27 0.002 28.5 3.1 29 328-356 81-109 (120)
267 d1qxna_ c.46.1.3 (A:) Polysulf 21.0 17 0.0012 31.0 1.7 29 328-356 81-109 (137)
268 d1g7da_ a.71.1.1 (A:) Endoplas 20.9 40 0.0029 27.2 4.0 35 716-750 63-97 (106)
269 d1qhla_ c.37.1.12 (A:) Cell di 20.6 5.8 0.00043 35.9 -1.7 22 94-116 27-48 (222)
270 d1zk8a1 a.4.1.9 (A:6-77) Trans 20.6 19 0.0014 26.7 1.7 50 863-916 21-70 (72)
271 d2onka1 c.37.1.12 (A:1-240) Mo 20.4 21 0.0016 33.7 2.4 16 92-107 25-40 (240)
272 d1deka_ c.37.1.1 (A:) Deoxynuc 20.3 21 0.0016 33.2 2.5 18 94-111 4-21 (241)
273 d1vi0a1 a.4.1.9 (A:6-77) Hypot 20.3 32 0.0024 25.2 3.1 37 864-900 20-56 (72)
274 d1tmka_ c.37.1.1 (A:) Thymidyl 20.2 51 0.0037 30.0 5.3 37 90-128 2-38 (214)
275 d1u0la2 c.37.1.8 (A:69-293) Pr 20.2 30 0.0022 32.2 3.4 28 80-107 84-111 (225)
276 d2bv3a2 c.37.1.8 (A:7-282) Elo 20.2 24 0.0018 34.0 2.9 23 92-114 7-29 (276)
277 d1jt6a1 a.4.1.9 (A:2-72) Multi 20.1 56 0.0041 23.7 4.5 36 864-899 20-55 (71)
278 d1s7oa_ a.4.13.3 (A:) Hypothet 20.0 62 0.0045 26.0 5.0 40 858-897 25-64 (106)
No 1
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=100.00 E-value=8.1e-33 Score=301.13 Aligned_cols=280 Identities=17% Similarity=0.127 Sum_probs=191.6
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHH-HHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecH
Q 002359 88 LERNESVLVSAHTSAGKTAVAEYAIAM-AFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT 166 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~-~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp 166 (931)
+.+|++++|.||||||||++|+.+++. .+.++.++||++||++|++|++++|+.....+.....+........++++||
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~Ptr~La~q~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~t~ 85 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRYQTPAIRAEHTGREIVDLMCH 85 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHTTTSCCBCCC--------CCCSEEEEEH
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEEccHHHHHHHHHHHHhcCCcceeeeEEeecccCccccccCCc
Confidence 467899999999999999998777665 4567899999999999999999999887665444444445566788999999
Q ss_pred HHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHh--cCCCceEEEeccCCCChHHHHHHHHhhcCCCeEEE
Q 002359 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF--LPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 244 (931)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~--l~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~ 244 (931)
+.+..+.... ..+.++++||+||||++.++ +......+.. .....+++++|||+++... .
T Consensus 86 ~~l~~~~~~~-~~~~~~~~vViDE~H~~~~~--~~~~~~~l~~~~~~~~~~~v~~SAT~~~~~~-----------~---- 147 (305)
T d2bmfa2 86 ATFTMRLLSP-IRVPNYNLIIMDEAHFTDPA--SIAARGYISTRVEMGEAAGIFMTATPPGSRD-----------P---- 147 (305)
T ss_dssp HHHHHHHTSS-SCCCCCSEEEEESTTCCSHH--HHHHHHHHHHHHHHTSCEEEEECSSCTTCCC-----------S----
T ss_pred HHHHHHHhcC-ccccceeEEEeeeeeecchh--hHHHHHHHHHhhccccceEEEeecCCCccee-----------e----
Confidence 9998776643 45789999999999999754 2223333322 2457899999999975431 0
Q ss_pred ecCCCCCcceeeeeccCCCceeEeeCccchhchhhHHHHHHHHHhhhcCCCcCCCCCCCCccCCCCCCCCCCHHHHHHHH
Q 002359 245 YTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMI 324 (931)
Q Consensus 245 ~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 324 (931)
......|....... .... ..... ...
T Consensus 148 -~~~~~~~~~~~~~~---------~~~~---------------------------------------~~~~~----~~~- 173 (305)
T d2bmfa2 148 -FPQSNAPIMDEERE---------IPER---------------------------------------SWNSG----HEW- 173 (305)
T ss_dssp -SCCCSSCEEEEECC---------CCCS---------------------------------------CCSSC----CHH-
T ss_pred -ecccCCcceEEEEe---------ccHH---------------------------------------HHHHH----HHH-
Confidence 00011111000000 0000 00000 011
Q ss_pred HHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCH
Q 002359 325 MERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLP 404 (931)
Q Consensus 325 ~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~ 404 (931)
......+++|||++++.|+.++..|.+.++. +..+||++.+
T Consensus 174 ~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~---------------------------------------~~~l~~~~~~ 214 (305)
T d2bmfa2 174 VTDFKGKTVWFVPSIKAGNDIAACLRKNGKK---------------------------------------VIQLSRKTFD 214 (305)
T ss_dssp HHSSCSCEEEECSCHHHHHHHHHHHHHHTCC---------------------------------------CEECCTTCHH
T ss_pred HHhhCCCEEEEeccHHHHHHHHHHHHhCCCC---------------------------------------EEEeCCcChH
Confidence 1234578999999999999999999875554 4778999866
Q ss_pred HHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEe-----cceecCCCCC------cccCHHHHHHhhhccCCCCCC
Q 002359 405 VIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFT-----AVKKWDGDSH------RYIGSGEYIQMSGRAGRRGKD 473 (931)
Q Consensus 405 ~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~-----~~~~~d~~~~------~~~s~~~y~Qr~GRaGR~G~~ 473 (931)
..+ ..|++|..+++|||+++++|+|++...+|.. ....||+..+ .|.|..+|+||+|||||.|..
T Consensus 215 ~~~----~~~~~~~~~~lvaT~~~~~G~~~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~ 290 (305)
T d2bmfa2 215 SEY----IKTRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKN 290 (305)
T ss_dssp HHG----GGGGTSCCSEEEECGGGGTTCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSC
T ss_pred HHH----hhhhccchhhhhhhHHHHhcCCCCccEEEEcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCC
Confidence 544 4688999999999999999999986665422 2224555432 478999999999999999987
Q ss_pred CceEEEEEe
Q 002359 474 DRGICIIMV 482 (931)
Q Consensus 474 ~~g~~ii~~ 482 (931)
+.+..+...
T Consensus 291 ~~~~~~~~~ 299 (305)
T d2bmfa2 291 ENDQYIYMG 299 (305)
T ss_dssp CCEEEEECS
T ss_pred ceEEEEECC
Confidence 666544433
No 2
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.96 E-value=2.3e-28 Score=248.67 Aligned_cols=172 Identities=18% Similarity=0.264 Sum_probs=149.7
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh---CCCEEEEEcCchhhHHHHHHHHHHhcC-
Q 002359 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEFK- 144 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~---~~~rvl~l~P~kaL~~Q~~~~l~~~~~- 144 (931)
...++|+ |+|+|++||+.+.+|+|++++||||||||++|++|++..+. ++.++++++|+++|+.|+++.+.....
T Consensus 18 l~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~ 97 (206)
T d1veca_ 18 IFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKH 97 (206)
T ss_dssp HHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTT
T ss_pred HHHCCCCCCCHHHHHHHHHHHcCCCEEeeccCccccccccccchhhcccccccCcceEEEeecchhhHHHHHHHHHHhhc
Confidence 3457997 99999999999999999999999999999999999998873 467899999999999999999987754
Q ss_pred ----CeEEEecccc-------cCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCC
Q 002359 145 ----DVGLMTGDVT-------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPA 213 (931)
Q Consensus 145 ----~vg~~tGd~~-------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~ 213 (931)
.+....|+.. ....++|+|+||+++.+++..+...+++++++|+||||.|.+.+|+..++.++..+|++
T Consensus 98 ~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~~~~~ 177 (206)
T d1veca_ 98 MGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 177 (206)
T ss_dssp SSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTT
T ss_pred ccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccchhccccccceEEEeccccccccchHHHHHHHHHhCCCC
Confidence 3445555553 35679999999999999999888889999999999999999999999999999999999
Q ss_pred ceEEEeccCCCChHHHHHHHHhhcCCCeEE
Q 002359 214 IKMVFLSATMSNATQFAEWICHLHKQPCHV 243 (931)
Q Consensus 214 ~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v 243 (931)
.|++++|||+++. +.++...+..+|+.+
T Consensus 178 ~Q~~l~SAT~~~~--v~~l~~~~l~~P~~I 205 (206)
T d1veca_ 178 RQILLYSATFPLS--VQKFMNSHLEKPYEI 205 (206)
T ss_dssp CEEEEEESCCCHH--HHHHHHHHCSSCEEE
T ss_pred CEEEEEEecCCHH--HHHHHHHHCCCCEEE
Confidence 9999999999855 446777766666543
No 3
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.96 E-value=7.5e-29 Score=254.29 Aligned_cols=172 Identities=18% Similarity=0.271 Sum_probs=150.2
Q ss_pred ccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh---CCCEEEEEcCchhhHHHHHHHHHHhcC--
Q 002359 71 KTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEFK-- 144 (931)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~---~~~rvl~l~P~kaL~~Q~~~~l~~~~~-- 144 (931)
...+|+ |+|+|.+|||.+.+|+|++++||||||||++|.+|++..+. .+.+++|++||++|+.|+++.+..+..
T Consensus 33 ~~~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~ 112 (222)
T d2j0sa1 33 YAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM 112 (222)
T ss_dssp HHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTT
T ss_pred HHCCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhcccccccccccccCceeEEecchHHHHHHHHHHHHHHhCcc
Confidence 346888 99999999999999999999999999999999999999873 456899999999999999999988765
Q ss_pred --CeEEEecccccC-------CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCce
Q 002359 145 --DVGLMTGDVTLS-------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIK 215 (931)
Q Consensus 145 --~vg~~tGd~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q 215 (931)
.+..+.|+...+ .+++|+|+||+++.+++.++...+++++++|+||||+|.+.+|+..+..++..+|+..|
T Consensus 113 ~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~l~~~~Q 192 (222)
T d2j0sa1 113 NVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 192 (222)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCE
T ss_pred ceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccccccccccceeeeecchhHhhhcCcHHHHHHHHHhCCCCCE
Confidence 567778877532 46899999999999999888888999999999999999999999999999999999999
Q ss_pred EEEeccCCCChHHHHHHHHhhcCCCeEEE
Q 002359 216 MVFLSATMSNATQFAEWICHLHKQPCHVV 244 (931)
Q Consensus 216 ~v~lSAT~~n~~e~~~~l~~~~~~~~~v~ 244 (931)
++++|||+++.. .++...+..+|+.+.
T Consensus 193 ~ilfSAT~~~~v--~~l~~~~l~~Pv~I~ 219 (222)
T d2j0sa1 193 VVLISATLPHEI--LEMTNKFMTDPIRIL 219 (222)
T ss_dssp EEEEESCCCHHH--HTTGGGTCSSCEEEC
T ss_pred EEEEEEeCCHHH--HHHHHHHCCCCEEEE
Confidence 999999998643 355555556666553
No 4
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.95 E-value=2.8e-28 Score=249.87 Aligned_cols=173 Identities=20% Similarity=0.200 Sum_probs=149.0
Q ss_pred ccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh---CCCEEEEEcCchhhHHHHHHHHHHhcC--
Q 002359 71 KTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEFK-- 144 (931)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~---~~~rvl~l~P~kaL~~Q~~~~l~~~~~-- 144 (931)
...+|+ |+|+|++||+.+..|+|++++||||||||++|++|++..+. .+.+++|++||++|+.|+++.+..+..
T Consensus 28 ~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~~~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~ 107 (218)
T d2g9na1 28 YAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM 107 (218)
T ss_dssp HHHTCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHHTTT
T ss_pred HHCCCCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhhhhhhhhheecccccCccEEEEcccchhhhhHHHHHhhhcccc
Confidence 456887 99999999999999999999999999999999999999874 467899999999999999999998866
Q ss_pred --CeEEEeccccc--------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCc
Q 002359 145 --DVGLMTGDVTL--------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAI 214 (931)
Q Consensus 145 --~vg~~tGd~~~--------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~ 214 (931)
.+..+.|+... ...++|+|+||+++.+++.++...+++++++|+||||.|.+.+|+..+..++..+|++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlDEaD~ll~~~f~~~~~~Il~~~~~~~ 187 (218)
T d2g9na1 108 GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 187 (218)
T ss_dssp TCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred ceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcCCcccccceEEEeeecchhhcCchHHHHHHHHHhCCCCC
Confidence 34445544332 23589999999999999999888899999999999999999999999999999999999
Q ss_pred eEEEeccCCCChHHHHHHHHhhcCCCeEEEe
Q 002359 215 KMVFLSATMSNATQFAEWICHLHKQPCHVVY 245 (931)
Q Consensus 215 q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~~ 245 (931)
|++++|||+++. +.++...+..+|+.+..
T Consensus 188 Q~il~SAT~~~~--v~~~~~~~l~~pv~i~v 216 (218)
T d2g9na1 188 QVVLLSATMPSD--VLEVTKKFMRDPIRILV 216 (218)
T ss_dssp EEEEEESCCCHH--HHHHHHHHCSSCEEEEC
T ss_pred eEEEEEecCCHH--HHHHHHHHCCCCEEEEE
Confidence 999999999865 44666666667766643
No 5
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.95 E-value=3.8e-28 Score=247.28 Aligned_cols=172 Identities=20% Similarity=0.212 Sum_probs=148.1
Q ss_pred ccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC---CCEEEEEcCchhhHHHHHHHHHHhcC--
Q 002359 71 KTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYRELHQEFK-- 144 (931)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~---~~rvl~l~P~kaL~~Q~~~~l~~~~~-- 144 (931)
...+|+ |+|+|++|||.+.+|+|++++||||||||++|++|++..+.. +.+++|++||++|+.|+++.++.+..
T Consensus 17 ~~~g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~ 96 (207)
T d1t6na_ 17 VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYM 96 (207)
T ss_dssp HHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTS
T ss_pred HHCCCCCCCHHHHHHHHHHHcCCCeEEEeccccccccccccceeeeecccCCCceEEEEeccchhhHHHHHHHHHHHhhC
Confidence 357998 999999999999999999999999999999999999988743 56899999999999999999988765
Q ss_pred ---CeEEEecccccC--------CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCC-CchHHHHHHHHhcCC
Q 002359 145 ---DVGLMTGDVTLS--------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDR-ERGVVWEESIIFLPP 212 (931)
Q Consensus 145 ---~vg~~tGd~~~~--------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~-~~g~~~~~ii~~l~~ 212 (931)
.+++++|+.+.+ ..++|+|+||+++.+++.++...++++.++|+||||.|.+. ++...++.++..+++
T Consensus 97 ~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD~ll~~~~~~~~i~~I~~~~~~ 176 (207)
T d1t6na_ 97 PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 176 (207)
T ss_dssp TTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCS
T ss_pred CCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccCCceeccccceeehhhhhhhhhcCCcHHHHHHHHHhCCC
Confidence 467777876532 46899999999999999988888999999999999999874 677778899999999
Q ss_pred CceEEEeccCCCChHHHHHHHHhhcCCCeEEE
Q 002359 213 AIKMVFLSATMSNATQFAEWICHLHKQPCHVV 244 (931)
Q Consensus 213 ~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~ 244 (931)
..|++++|||+++..+ ++...+.++|+.+.
T Consensus 177 ~~Q~il~SAT~~~~v~--~l~~~~l~~P~~I~ 206 (207)
T d1t6na_ 177 EKQVMMFSATLSKEIR--PVCRKFMQDPMEIF 206 (207)
T ss_dssp SSEEEEEESCCCTTTH--HHHHTTCSSCEEEE
T ss_pred CCEEEEEeeeCCHHHH--HHHHHHCCCCEEEe
Confidence 9999999999986643 55555566676654
No 6
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.94 E-value=2.1e-27 Score=242.25 Aligned_cols=171 Identities=19% Similarity=0.191 Sum_probs=146.9
Q ss_pred ccCCCC-CCHHHHHHHHHHhcC-CcEEEEcCCCCCcHHHHHHHHHHHH--hCCCEEEEEcCchhhHHHHHHHHHHhcC--
Q 002359 71 KTYSFE-LDPFQRVSVACLERN-ESVLVSAHTSAGKTAVAEYAIAMAF--RDKQRVIYTSPLKALSNQKYRELHQEFK-- 144 (931)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~~g-~~vlv~apTGsGKTl~~~l~i~~~l--~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-- 144 (931)
..++|+ |+|+|.++|+.+.+| .|++++||||+|||++|.+++.... ..+.+++|++||++|+.|+++.+..++.
T Consensus 20 ~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~~~~~~~lil~pt~~l~~q~~~~~~~~~~~~ 99 (208)
T d1hv8a1 20 RNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNK 99 (208)
T ss_dssp HHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSS
T ss_pred HHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeecccccccccccCcceEEEeeccccchhhhhhhhhhcccC
Confidence 357887 999999999998877 4999999999999999999998875 3567999999999999999999998875
Q ss_pred --CeEEEecccccC------CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceE
Q 002359 145 --DVGLMTGDVTLS------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKM 216 (931)
Q Consensus 145 --~vg~~tGd~~~~------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~ 216 (931)
.+...+|+.+.. .+++|+|+||++|.+++.++...+++++++|+||||++.+.+++..+..++..++++.|+
T Consensus 100 ~~~v~~~~g~~~~~~~~~~l~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~I~~~~~~~~Q~ 179 (208)
T d1hv8a1 100 NLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRI 179 (208)
T ss_dssp CCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEE
T ss_pred CeEEEEeeCCCChHHHHHhcCCCCEEEEChHHHHHHHHcCCCCcccCcEEEEEChHHhhcCCChHHHHHHHHhCCCCCeE
Confidence 677788876533 268999999999999998888889999999999999999999999999999999999999
Q ss_pred EEeccCCCChHHHHHHHHhhcCCCeEE
Q 002359 217 VFLSATMSNATQFAEWICHLHKQPCHV 243 (931)
Q Consensus 217 v~lSAT~~n~~e~~~~l~~~~~~~~~v 243 (931)
+++|||+++. +.++...+.+++..+
T Consensus 180 i~~SAT~~~~--v~~~~~~~l~~~~~I 204 (208)
T d1hv8a1 180 LLFSATMPRE--ILNLAKKYMGDYSFI 204 (208)
T ss_dssp EEECSSCCHH--HHHHHHHHCCSEEEE
T ss_pred EEEEccCCHH--HHHHHHHHCCCCeEE
Confidence 9999999865 335555555544433
No 7
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.94 E-value=3.2e-27 Score=240.99 Aligned_cols=171 Identities=21% Similarity=0.240 Sum_probs=145.6
Q ss_pred ccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh---CCCEEEEEcCchhhHHHHHHHHHHhcC--
Q 002359 71 KTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEFK-- 144 (931)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~---~~~rvl~l~P~kaL~~Q~~~~l~~~~~-- 144 (931)
..+||+ |+|+|++||+.+..|+|++++||||||||++|++|++..+. .+.++++++||++|+.|.+..+.....
T Consensus 26 ~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~ 105 (212)
T d1qdea_ 26 FGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM 105 (212)
T ss_dssp HHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred HHCCCCCCCHHHHHHHHHHHcCCCEEeecccccchhhhhHhhhHhhhhccCCCcceEEEcccHHHhhhhhhhhccccccc
Confidence 357898 99999999999999999999999999999999999999874 467899999999999999999987755
Q ss_pred --CeEEEeccccc------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceE
Q 002359 145 --DVGLMTGDVTL------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKM 216 (931)
Q Consensus 145 --~vg~~tGd~~~------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~ 216 (931)
.+....|+... ..+++|+|+||+++.+++..+...+.+++++|+||||.+.+.+|+..+..++..+++..|+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDEad~lld~~f~~~v~~I~~~~~~~~Q~ 185 (212)
T d1qdea_ 106 DIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQV 185 (212)
T ss_dssp CCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEE
T ss_pred ccceeeEeeccchhHHHHHhcCCcEEEECCCccccccccCceecCcceEEeehhhhhhcccchHHHHHHHHHhCCCCCeE
Confidence 33444444332 2368999999999999999998899999999999999999999999999999999999999
Q ss_pred EEeccCCCChHHHHHHHHhhcCCCeEE
Q 002359 217 VFLSATMSNATQFAEWICHLHKQPCHV 243 (931)
Q Consensus 217 v~lSAT~~n~~e~~~~l~~~~~~~~~v 243 (931)
+++|||+++. +.++...+..+|+.+
T Consensus 186 vl~SAT~~~~--v~~l~~~~l~~Pv~i 210 (212)
T d1qdea_ 186 VLLSATMPND--VLEVTTKFMRNPVRI 210 (212)
T ss_dssp EEEESSCCHH--HHHHHHHHCSSCEEE
T ss_pred EEEEeeCCHH--HHHHHHHHCCCCEEE
Confidence 9999999865 334555555666655
No 8
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.94 E-value=6.8e-27 Score=237.83 Aligned_cols=167 Identities=29% Similarity=0.431 Sum_probs=145.6
Q ss_pred hhhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC--
Q 002359 68 EMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-- 144 (931)
Q Consensus 68 ~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-- 144 (931)
...+..+|+ |+|+|.+|++.+.+|++++++||||+|||.+|.++++..+.++.+++|++|+++|++|++++++++++
T Consensus 16 ~~l~~~g~~~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~~~~~~~~vl~l~P~~~L~~q~~~~~~~~~~~~ 95 (202)
T d2p6ra3 16 GILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIG 95 (202)
T ss_dssp HHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTT
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCchhHHHHHHHHHHhhccCcceeecccHHHHHHHHHHHHHHhhcc
Confidence 334456775 99999999999999999999999999999999999999998999999999999999999999998876
Q ss_pred -CeEEEecccccCC----CCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHH---hcCCCceE
Q 002359 145 -DVGLMTGDVTLSP----NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII---FLPPAIKM 216 (931)
Q Consensus 145 -~vg~~tGd~~~~~----~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~---~l~~~~q~ 216 (931)
.++..+|+..... .++++++||..+..++.+....+..+++||+||+|.+.+..++..++.++. .++++.|+
T Consensus 96 ~~v~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~~~~~~ 175 (202)
T d2p6ra3 96 LRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRV 175 (202)
T ss_dssp CCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEE
T ss_pred ccceeeccCcccccccccccceeeeccHHHHHHHhccchhhhhhhhccccHHHHhcccccchHHHHHHHHHHhcCCCCcE
Confidence 6777777765433 588999999999999888877889999999999999999888888776654 45778999
Q ss_pred EEeccCCCChHHHHHHHH
Q 002359 217 VFLSATMSNATQFAEWIC 234 (931)
Q Consensus 217 v~lSAT~~n~~e~~~~l~ 234 (931)
++||||++|..++++|++
T Consensus 176 l~lSATl~n~~~~~~~l~ 193 (202)
T d2p6ra3 176 IGLSATAPNVTEIAEWLD 193 (202)
T ss_dssp EEEECCCTTHHHHHHHTT
T ss_pred EEEcCCCCcHHHHHHHcC
Confidence 999999999999999995
No 9
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.93 E-value=4.4e-26 Score=229.96 Aligned_cols=172 Identities=31% Similarity=0.499 Sum_probs=133.0
Q ss_pred CHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccc
Q 002359 316 DIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGI 395 (931)
Q Consensus 316 ~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi 395 (931)
....++..+.. .+.|+||||+||+.|+.+|..|........... . +...+ ...........|.+++.+||
T Consensus 28 ~~~~l~~~~i~-~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~-~----~~~~~----~~~~~~~~~~~L~~~l~~GI 97 (201)
T d2p6ra4 28 KFEELVEECVA-ENGGVLVFESTRRGAEKTAVKLSAITAKYVENE-G----LEKAI----LEENEGEMSRKLAECVRKGA 97 (201)
T ss_dssp CHHHHHHHHHH-TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCS-S----HHHHH----HTTCCSHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHH-cCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchh-H----HHHHH----HHhhhhhhhHHHHHHHhccH
Confidence 34455554444 347999999999999999999865211100000 0 00000 01112234456889999999
Q ss_pred eeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCc
Q 002359 396 AVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDR 475 (931)
Q Consensus 396 ~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~ 475 (931)
++|||||++.+|+.+++.|++|.++|||||+++++|||+|+.++||++..+||+.. .|.++.+|+||+|||||.|.+..
T Consensus 98 a~hh~~l~~~~r~~ie~~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~-~~~~~~~~~q~~GRAGR~g~~~~ 176 (201)
T d2p6ra4 98 AFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYS-KRIKVSEYKQMAGRAGRPGMDER 176 (201)
T ss_dssp CEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSE-EECCHHHHHHHHTTBSCTTTCSC
T ss_pred HHHHHHhhhhhHHHHHHHHhCCCceEEEechHHHhhcCCCCceEEEecceeccCCc-CCCCHHHHHHHhcccCCCCCCCe
Confidence 99999999999999999999999999999999999999999999999999998743 46899999999999999999999
Q ss_pred eEEEEEeCCccCHHHHHhhhhcc
Q 002359 476 GICIIMVDEQMEMNTLKDMVLEG 498 (931)
Q Consensus 476 g~~ii~~~~~~~~~~l~~l~~~~ 498 (931)
|.+++++.+......+++++.|.
T Consensus 177 G~~~l~~~~~~~~~~~k~~~~~~ 199 (201)
T d2p6ra4 177 GEAIIIVGKRDREIAVKRYIFGE 199 (201)
T ss_dssp EEEEEECCGGGHHHHHHTTTSSC
T ss_pred eEEEEEeCCCChHHHHHHHhccC
Confidence 99999988775555678888764
No 10
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Probab=99.93 E-value=1.9e-25 Score=232.02 Aligned_cols=173 Identities=16% Similarity=0.151 Sum_probs=146.5
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh------------CCCEEEEEcCchhhHHHHH
Q 002359 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR------------DKQRVIYTSPLKALSNQKY 136 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~------------~~~rvl~l~P~kaL~~Q~~ 136 (931)
....+|+ |+|+|..||+.+.+|+|++++||||||||++|++|++..+. .+.+++|++||++|+.|++
T Consensus 36 L~~~g~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~~alil~pt~el~~q~~ 115 (238)
T d1wrba1 36 ILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQIL 115 (238)
T ss_dssp TTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHHhcccccccccCCCCceEEEeccchhhhcchh
Confidence 3467898 99999999999999999999999999999999999998872 2467999999999999999
Q ss_pred HHHHHhcC----CeEEEeccccc-------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHH
Q 002359 137 RELHQEFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEE 205 (931)
Q Consensus 137 ~~l~~~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ 205 (931)
+.+..... .+..++|+... ...++|+|+||++|.+++..+...+.++.++|+||||.+.+.+|+..++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~~lViDEaD~ll~~~f~~~i~~ 195 (238)
T d1wrba1 116 SESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRK 195 (238)
T ss_dssp HHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHH
T ss_pred eeeeecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHccCceeccccceeeeehhhhhhhhccHHHHHH
Confidence 99888755 56667777643 34689999999999999988888899999999999999999999999999
Q ss_pred HHHhcC----CCceEEEeccCCCChHHHHHHHHhhcCCCeEEE
Q 002359 206 SIIFLP----PAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 244 (931)
Q Consensus 206 ii~~l~----~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~ 244 (931)
++..+. .+.|++++|||+++.. .+....+.++|+++.
T Consensus 196 Il~~~~~~~~~~~Q~il~SAT~~~~v--~~l~~~~~~~p~~i~ 236 (238)
T d1wrba1 196 IIEESNMPSGINRQTLMFSATFPKEI--QKLAADFLYNYIFMT 236 (238)
T ss_dssp HHHSSCCCCGGGCEEEEEESSCCHHH--HHHHHHHCSSCEEEE
T ss_pred HHHHhcCCCCCCCEEEEEeeeCCHHH--HHHHHHHCCCCEEEE
Confidence 988654 2679999999998543 355555556666553
No 11
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.93 E-value=6.8e-26 Score=230.74 Aligned_cols=172 Identities=22% Similarity=0.282 Sum_probs=150.5
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHH---hCCCEEEEEcCchhhHHHHHHHHHHhcC-
Q 002359 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF---RDKQRVIYTSPLKALSNQKYRELHQEFK- 144 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l---~~~~rvl~l~P~kaL~~Q~~~~l~~~~~- 144 (931)
....+|+ |+|+|++|||.+.+|+|++++||||||||++|++|+...+ ..+.++++++|+.+++.|.+..+.....
T Consensus 16 L~~~g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (206)
T d1s2ma1 16 IFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKH 95 (206)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred HHHCCCCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhhhccccccccccccccccceeeccchhhhhhhhhhhhhcccc
Confidence 3457898 9999999999999999999999999999999999999887 3467899999999999999988887765
Q ss_pred ---CeEEEecccc-------cCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCc
Q 002359 145 ---DVGLMTGDVT-------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAI 214 (931)
Q Consensus 145 ---~vg~~tGd~~-------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~ 214 (931)
.+...+|+.. ++..++|+|+||++|.+++..+...+.+++++|+||||.|.+.+|+..++.++..+++..
T Consensus 96 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DEaD~l~~~~f~~~v~~I~~~l~~~~ 175 (206)
T d1s2ma1 96 CGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH 175 (206)
T ss_dssp TTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSC
T ss_pred cCeeEEeecCccchhhHHHHhcccceEEEECCcccccccccceeecccceEEEeechhhhhhhhhHHHHHHHHHhCCCCC
Confidence 6777888765 346799999999999999998888899999999999999999999999999999999999
Q ss_pred eEEEeccCCCChHHHHHHHHhhcCCCeEE
Q 002359 215 KMVFLSATMSNATQFAEWICHLHKQPCHV 243 (931)
Q Consensus 215 q~v~lSAT~~n~~e~~~~l~~~~~~~~~v 243 (931)
|++++|||+++. +.++...+..+|..+
T Consensus 176 Q~il~SATl~~~--v~~~~~~~l~~P~~I 202 (206)
T d1s2ma1 176 QSLLFSATFPLT--VKEFMVKHLHKPYEI 202 (206)
T ss_dssp EEEEEESCCCHH--HHHHHHHHCSSCEEE
T ss_pred EEEEEEEeCCHH--HHHHHHHHCCCCEEE
Confidence 999999999744 445666666666554
No 12
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.92 E-value=3.1e-25 Score=226.81 Aligned_cols=173 Identities=19% Similarity=0.226 Sum_probs=146.4
Q ss_pred hccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh---CCCEEEEEcCchhhHHHHHHHHHHhcC-
Q 002359 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEFK- 144 (931)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~---~~~rvl~l~P~kaL~~Q~~~~l~~~~~- 144 (931)
...++|+ |+|+|++||+.+.+|+|++++||||||||++|++|++..+. ....+++++|++.++.|.+..+.....
T Consensus 16 l~~~g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (209)
T d1q0ua_ 16 IKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKF 95 (209)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCCCHHHHHHHHHHHCCCCeEeecccccccceeeeeeeccccccccccccccccccccchhHHHHHHHHhhhcc
Confidence 3457997 99999999999999999999999999999999999998874 346789999999999999988876543
Q ss_pred -------CeEEEecccc-------cCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc
Q 002359 145 -------DVGLMTGDVT-------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL 210 (931)
Q Consensus 145 -------~vg~~tGd~~-------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l 210 (931)
.+....|+.+ .+.+++|+|+||+++.+++.+....+.++.++|+||||++.+++|+..++.++..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViDEad~ll~~~f~~~v~~I~~~~ 175 (209)
T d1q0ua_ 96 CPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARM 175 (209)
T ss_dssp SCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhhccccccceEEEEeecccccccccHHHHHHHHHHC
Confidence 2444445443 34568999999999999999888889999999999999999999999999999999
Q ss_pred CCCceEEEeccCCCChHHHHHHHHhhcCCCeEEE
Q 002359 211 PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 244 (931)
Q Consensus 211 ~~~~q~v~lSAT~~n~~e~~~~l~~~~~~~~~v~ 244 (931)
+++.|++++|||+|+.. .+++..+.++|..+.
T Consensus 176 ~~~~Q~il~SATl~~~v--~~l~~~~l~~p~~i~ 207 (209)
T d1q0ua_ 176 PKDLQMLVFSATIPEKL--KPFLKKYMENPTFVH 207 (209)
T ss_dssp CTTCEEEEEESCCCGGG--HHHHHHHCSSCEEEE
T ss_pred CCCCEEEEEEccCCHHH--HHHHHHHCCCCEEEE
Confidence 99999999999997653 356665666665553
No 13
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=99.89 E-value=1.3e-23 Score=214.12 Aligned_cols=166 Identities=16% Similarity=0.153 Sum_probs=130.9
Q ss_pred hhhhccCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCC
Q 002359 67 GEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKD 145 (931)
Q Consensus 67 ~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~ 145 (931)
..+...|||+ |+|+|.+|++++.+|+|++|++|||||||++|.+++.. ...+++|++|+++|++|+.++++..+..
T Consensus 15 ~~l~~~fg~~~~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~---~~~~~~~v~P~~~L~~q~~~~l~~~~~~ 91 (206)
T d1oywa2 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL---LNGLTVVVSPLISLMKDQVDQLQANGVA 91 (206)
T ss_dssp HHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH---SSSEEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCCCcchhhhhhhh---ccCceEEeccchhhhhhHHHHHHhhccc
Confidence 4455677997 99999999999999999999999999999999988764 5889999999999999999999999876
Q ss_pred eEEEecccc-----------cCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHH----HHHHhc
Q 002359 146 VGLMTGDVT-----------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWE----ESIIFL 210 (931)
Q Consensus 146 vg~~tGd~~-----------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~----~ii~~l 210 (931)
.+...+... .....+++++||+.+............+++++|+||||.+.+++++..++ ..+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~lviDEaH~~~~~~~~~~~~~~~~~~l~~~ 171 (206)
T d1oywa2 92 AACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR 171 (206)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHH
T ss_pred ccccccccccccchhHHHHHhcCCceEEEEechhhhchhhcccchhheeeeeeeeeeeeeeccccchHHHHHHHHHHHHh
Confidence 665544332 22368899999998876554445557789999999999999876654333 112223
Q ss_pred CCCceEEEeccCCCChH--HHHHHHHh
Q 002359 211 PPAIKMVFLSATMSNAT--QFAEWICH 235 (931)
Q Consensus 211 ~~~~q~v~lSAT~~n~~--e~~~~l~~ 235 (931)
.+++|+++||||+++.. ++.+|++.
T Consensus 172 ~~~~~ii~lSATl~~~v~~di~~~L~l 198 (206)
T d1oywa2 172 FPTLPFMALTATADDTTRQDIVRLLGL 198 (206)
T ss_dssp CTTSCEEEEESCCCHHHHHHHHHHHTC
T ss_pred CCCCceEEEEeCCCHHHHHHHHHHcCC
Confidence 35799999999998763 56777753
No 14
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.88 E-value=4.8e-22 Score=201.32 Aligned_cols=163 Identities=21% Similarity=0.235 Sum_probs=130.8
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHH-hCCCEEEEEcCchhhHHHHHHHHHHhcC----CeE
Q 002359 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFK----DVG 147 (931)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l-~~~~rvl~l~P~kaL~~Q~~~~l~~~~~----~vg 147 (931)
..++|++||.+++..+. ++|+++++|||+|||++|.+++...+ ..+.+++|++|+++|+.|+++++.++++ .++
T Consensus 6 ~~~~pr~~Q~~~~~~~~-~~n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P~~~L~~q~~~~~~~~~~~~~~~v~ 84 (200)
T d1wp9a1 6 DLIQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIV 84 (200)
T ss_dssp HHHCCCHHHHHHHHHGG-GSCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEE
T ss_pred CCCCCCHHHHHHHHHHh-cCCeEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcCchHHHHHHHHHHHHhhccccccee
Confidence 34579999999998875 46799999999999999988776555 4678999999999999999999999986 456
Q ss_pred EEecccccC------CCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEecc
Q 002359 148 LMTGDVTLS------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSA 221 (931)
Q Consensus 148 ~~tGd~~~~------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSA 221 (931)
..+++.... ...+++++||+.+.+++......++++++||+||||++.+..........+.....+.+++++||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~l~~SA 164 (200)
T d1wp9a1 85 ALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTA 164 (200)
T ss_dssp EECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEES
T ss_pred eeecccchhHHHHhhhcccccccccchhHHHHhhhhhhccccceEEEEehhhhhcchhHHHHHHHHHhcCCCCcEEEEEe
Confidence 666654431 24689999999999998888778889999999999999876555555555555667889999999
Q ss_pred CCCCh-HHHHHHHHhh
Q 002359 222 TMSNA-TQFAEWICHL 236 (931)
Q Consensus 222 T~~n~-~e~~~~l~~~ 236 (931)
|+++. ..+.+++...
T Consensus 165 Tp~~~~~~~~~~~~~l 180 (200)
T d1wp9a1 165 SPGSTPEKIMEVINNL 180 (200)
T ss_dssp CSCSSHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHhcC
Confidence 99654 4466666554
No 15
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.87 E-value=1.8e-22 Score=210.29 Aligned_cols=146 Identities=16% Similarity=0.164 Sum_probs=116.3
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCe--------E
Q 002359 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDV--------G 147 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~v--------g 147 (931)
+|+++|+++++.+..|+|++++||||+|||+++.++++....++.+++|++|+++|++|+++++++++... +
T Consensus 43 ~p~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~ 122 (237)
T d1gkub1 43 EPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIG 122 (237)
T ss_dssp SCCHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEE
T ss_pred CCCHHHHHHHHHHHCCCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEeccHHHHHHHHHHHHHHHHHcCCceEEEEe
Confidence 69999999999999999999999999999999999998888899999999999999999999999886532 2
Q ss_pred EEecccc---------cCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHh---------
Q 002359 148 LMTGDVT---------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF--------- 209 (931)
Q Consensus 148 ~~tGd~~---------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~--------- 209 (931)
...++.. ...+++|+|+||+.|.+. ...+.++++||+||||.+.+..++ ...+...
T Consensus 123 ~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~----~~~~~~~~~vVvDE~d~~l~~~~~--~~~~~~~~g~~~~~~~ 196 (237)
T d1gkub1 123 YYHGRIPKREKENFMQNLRNFKIVITTTQFLSKH----YRELGHFDFIFVDDVDAILKASKN--VDKLLHLLGFHYDLKT 196 (237)
T ss_dssp ECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHC----STTSCCCSEEEESCHHHHHTSTHH--HHHHHHHTTEEEETTT
T ss_pred eeecccchhhhhhhhccccccceeccChHHHHHh----hhhcCCCCEEEEEChhhhhhcccc--hhHHHHhcCChHHHHH
Confidence 2333322 123578999999987543 344678999999999999876443 3333322
Q ss_pred ----cCCCceEEEeccCCCChH
Q 002359 210 ----LPPAIKMVFLSATMSNAT 227 (931)
Q Consensus 210 ----l~~~~q~v~lSAT~~n~~ 227 (931)
.+...|++++|||+++..
T Consensus 197 ~~~~~~~~~~~i~~SAT~~~~~ 218 (237)
T d1gkub1 197 KSWVGEARGCLMVSTATAKKGK 218 (237)
T ss_dssp TEEEECCSSEEEECCCCSCCCT
T ss_pred HHhhCCCCCeEEEEeCCCCccc
Confidence 245778999999998653
No 16
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=99.86 E-value=1.4e-21 Score=195.99 Aligned_cols=134 Identities=25% Similarity=0.369 Sum_probs=118.2
Q ss_pred CCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhcc
Q 002359 315 SDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRG 394 (931)
Q Consensus 315 ~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 394 (931)
.++..|++.+......++||||+|++.|+.++..|...++.
T Consensus 16 ~k~~~L~~~l~~~~~~~~IIF~~t~~~~~~l~~~l~~~~~~--------------------------------------- 56 (200)
T d1oywa3 16 KPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGIS--------------------------------------- 56 (200)
T ss_dssp SHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCC---------------------------------------
T ss_pred cHHHHHHHHHHhcCCCCEEEEEeeehhhHHhhhhhccCCce---------------------------------------
Confidence 45677888887777789999999999999999999887665
Q ss_pred ceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCC
Q 002359 395 IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDD 474 (931)
Q Consensus 395 i~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~ 474 (931)
+..+||++++.+|..+++.|++|.++|||||+++++|||+|++++|| +||. |.++.+|+||+|||||.|.
T Consensus 57 ~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd~~~~GiD~p~v~~VI----~~~~----P~~~~~y~qr~GR~gR~g~-- 126 (200)
T d1oywa3 57 AAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV----HFDI----PRNIESYYQETGRAGRDGL-- 126 (200)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEE----ESSC----CSSHHHHHHHHTTSCTTSS--
T ss_pred eEEecCCCcHHHHHHHHHHHhcccceEEEecchhhhccCCCCCCEEE----ECCC----ccchHHHHHHhhhhhcCCC--
Confidence 58899999999999999999999999999999999999999999999 8888 9999999999999999997
Q ss_pred ceEEEEEeCCccCHHHHHhhhhcc
Q 002359 475 RGICIIMVDEQMEMNTLKDMVLEG 498 (931)
Q Consensus 475 ~g~~ii~~~~~~~~~~l~~l~~~~ 498 (931)
.|.+++++++. +...+++++...
T Consensus 127 ~g~ai~~~~~~-d~~~l~~~i~~~ 149 (200)
T d1oywa3 127 PAEAMLFYDPA-DMAWLRRCLEEK 149 (200)
T ss_dssp CEEEEEEECHH-HHHHHHHHHHTS
T ss_pred CceEEEecCHH-HHHHHHhhhhcc
Confidence 48888888765 556666665544
No 17
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.85 E-value=1.2e-21 Score=190.10 Aligned_cols=127 Identities=20% Similarity=0.376 Sum_probs=106.3
Q ss_pred CHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccc
Q 002359 316 DIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGI 395 (931)
Q Consensus 316 ~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi 395 (931)
++..|.+.+......++||||+|+..|+.++..|...++. +
T Consensus 14 K~~~L~~ll~~~~~~k~iIF~~s~~~~~~l~~~L~~~~~~---------------------------------------~ 54 (162)
T d1fuka_ 14 KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFT---------------------------------------V 54 (162)
T ss_dssp HHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCC---------------------------------------E
T ss_pred HHHHHHHHHHhCCCCcEEEEEEEEchHHHHHHHHhhcCce---------------------------------------E
Confidence 4445556666667789999999999999999999887765 5
Q ss_pred eeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCc
Q 002359 396 AVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDR 475 (931)
Q Consensus 396 ~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~ 475 (931)
..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++|| +||. |.++..|+||+||+||.|..
T Consensus 55 ~~~~~~~~~~~r~~~l~~f~~~~~~iLv~Tdv~~rGiDi~~v~~VI----~~d~----P~~~~~yihR~GR~gR~g~~-- 124 (162)
T d1fuka_ 55 SAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI----NYDL----PANKENYIHRIGRGGRFGRK-- 124 (162)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEE----ESSC----CSSGGGGGGSSCSCC-------
T ss_pred EEeccCCchhhHHHHHHHHhhcccceeeccccccccccCCCceEEE----Eecc----chhHHHHHhhccccccCCCc--
Confidence 8899999999999999999999999999999999999999999999 8888 99999999999999999985
Q ss_pred eEEEEEeCCccCHHHHH
Q 002359 476 GICIIMVDEQMEMNTLK 492 (931)
Q Consensus 476 g~~ii~~~~~~~~~~l~ 492 (931)
|.++.++++. +...+.
T Consensus 125 g~~i~~~~~~-d~~~~~ 140 (162)
T d1fuka_ 125 GVAINFVTNE-DVGAMR 140 (162)
T ss_dssp CEEEEEEETT-THHHHH
T ss_pred cEEEEEcCHH-HHHHHH
Confidence 7777777655 444333
No 18
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.85 E-value=2.8e-21 Score=188.57 Aligned_cols=127 Identities=20% Similarity=0.422 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccc
Q 002359 316 DIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGI 395 (931)
Q Consensus 316 ~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi 395 (931)
++..|.+.+......++||||++++.|+.++..|...++. +
T Consensus 21 K~~~L~~ll~~~~~~k~iiF~~~~~~~~~~~~~l~~~~~~---------------------------------------~ 61 (168)
T d2j0sa2 21 KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFT---------------------------------------V 61 (168)
T ss_dssp HHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCC---------------------------------------C
T ss_pred HHHHHHHHHHhCCCCceEEEeeeHHHHHHHHHHhhhcccc---------------------------------------h
Confidence 4556666776667789999999999999999999887765 4
Q ss_pred eeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCc
Q 002359 396 AVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDR 475 (931)
Q Consensus 396 ~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~ 475 (931)
..+||++++.+|..+++.|++|.+++||||+++++|||+|++++|| +||. |.++..|+||+||+||.|..
T Consensus 62 ~~~~~~~~~~~r~~~~~~fk~g~~~iLv~Td~~~rGiDi~~v~~VI----n~d~----P~~~~~yihR~GR~gR~g~~-- 131 (168)
T d2j0sa2 62 SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII----NYDL----PNNRELYIHRIGRSGRYGRK-- 131 (168)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEE----ESSC----CSSHHHHHHHHTTSSGGGCC--
T ss_pred hhhhhhhhHHHHHHHHHHHhcCCccEEeccchhcccccccCcceEE----EecC----CcCHHHHHhhhccccccCCC--
Confidence 7899999999999999999999999999999999999999999999 8888 99999999999999999985
Q ss_pred eEEEEEeCCccCHHHHH
Q 002359 476 GICIIMVDEQMEMNTLK 492 (931)
Q Consensus 476 g~~ii~~~~~~~~~~l~ 492 (931)
|.++.++.+. +...++
T Consensus 132 G~~i~~~~~~-d~~~~~ 147 (168)
T d2j0sa2 132 GVAINFVKND-DIRILR 147 (168)
T ss_dssp EEEEEEEEGG-GHHHHH
T ss_pred cEEEEEECHH-HHHHHH
Confidence 7788777655 443333
No 19
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.84 E-value=7e-21 Score=186.91 Aligned_cols=122 Identities=20% Similarity=0.350 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhcc
Q 002359 315 SDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRG 394 (931)
Q Consensus 315 ~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 394 (931)
.+...|.+.+......++||||++++.|+.++..|...++.
T Consensus 18 ~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~g~~--------------------------------------- 58 (171)
T d1s2ma2 18 QKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYS--------------------------------------- 58 (171)
T ss_dssp GHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCC---------------------------------------
T ss_pred HHHHHHHHHHHhCCCCceEEEEeeeehhhHhHHhhhccccc---------------------------------------
Confidence 45667777777777889999999999999999999876655
Q ss_pred ceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCC
Q 002359 395 IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDD 474 (931)
Q Consensus 395 i~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~ 474 (931)
+..+||++++.+|+.++..|++|..++||||+++++|+|+|++++|| +||. |.++.+|+||+||+||.|..
T Consensus 59 ~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~Td~~~~Gid~~~v~~VI----~~d~----p~~~~~y~qr~GR~gR~g~~- 129 (171)
T d1s2ma2 59 CYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVI----NFDF----PKTAETYLHRIGRSGRFGHL- 129 (171)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEE----ESSC----CSSHHHHHHHHCBSSCTTCC-
T ss_pred ccccccccchhhhhhhhhhcccCccccccchhHhhhccccceeEEEE----ecCC----cchHHHHHHHhhhcccCCCc-
Confidence 57899999999999999999999999999999999999999999999 8888 99999999999999999974
Q ss_pred ceEEEEEeCCc
Q 002359 475 RGICIIMVDEQ 485 (931)
Q Consensus 475 ~g~~ii~~~~~ 485 (931)
|.++.++++.
T Consensus 130 -g~~i~~v~~~ 139 (171)
T d1s2ma2 130 -GLAINLINWN 139 (171)
T ss_dssp -EEEEEEECGG
T ss_pred -cEEEEEeCHH
Confidence 7888888765
No 20
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.83 E-value=1.7e-20 Score=181.02 Aligned_cols=127 Identities=22% Similarity=0.389 Sum_probs=109.5
Q ss_pred CCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhcc
Q 002359 315 SDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRG 394 (931)
Q Consensus 315 ~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 394 (931)
.++..|.+.+.. ...++||||+|++.|+.++..|...++.
T Consensus 15 ~K~~~L~~ll~~-~~~k~IIF~~s~~~~~~l~~~L~~~g~~--------------------------------------- 54 (155)
T d1hv8a2 15 ERFEALCRLLKN-KEFYGLVFCKTKRDTKELASMLRDIGFK--------------------------------------- 54 (155)
T ss_dssp GHHHHHHHHHCS-TTCCEEEECSSHHHHHHHHHHHHHTTCC---------------------------------------
T ss_pred HHHHHHHHHHcc-CCCCEEEEECchHHHHHHHhhhcccccc---------------------------------------
Confidence 455566665543 4568999999999999999999887765
Q ss_pred ceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCC
Q 002359 395 IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDD 474 (931)
Q Consensus 395 i~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~ 474 (931)
+..+||++++.+|..+++.|++|..+|||||+++++|||+|++++|| +||. |.++.+|+||+||+||.|..
T Consensus 55 ~~~~~~~~~~~~r~~~~~~f~~~~~~ilv~T~~~~~Gid~~~v~~Vi----~~d~----p~~~~~y~qr~GR~gR~g~~- 125 (155)
T d1hv8a2 55 AGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI----NYHL----PQNPESYMHRIGRTGRAGKK- 125 (155)
T ss_dssp EEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEE----ESSC----CSCHHHHHHHSTTTCCSSSC-
T ss_pred cccccccchhhhhhhhhhhhhcccceeeeehhHHhhhhhhccCcEEE----EecC----CCCHHHHHHHHHhcCcCCCC-
Confidence 57899999999999999999999999999999999999999999999 8888 99999999999999999975
Q ss_pred ceEEEEEeCCccCHHHHH
Q 002359 475 RGICIIMVDEQMEMNTLK 492 (931)
Q Consensus 475 ~g~~ii~~~~~~~~~~l~ 492 (931)
|.++.++++. +...++
T Consensus 126 -g~~i~~~~~~-d~~~~~ 141 (155)
T d1hv8a2 126 -GKAISIINRR-EYKKLR 141 (155)
T ss_dssp -CEEEEEECTT-SHHHHH
T ss_pred -ceEEEEEchH-HHHHHH
Confidence 7777777765 544444
No 21
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=99.83 E-value=1.8e-20 Score=180.77 Aligned_cols=124 Identities=20% Similarity=0.255 Sum_probs=105.8
Q ss_pred CHHHHHHHHHHc--CCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhc
Q 002359 316 DIFKIVKMIMER--KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKR 393 (931)
Q Consensus 316 ~~~~ll~~l~~~--~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 393 (931)
.+.+++..+.+. .+.++||||+|++.|+.++..|.+.|+.
T Consensus 16 qv~dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~-------------------------------------- 57 (174)
T d1c4oa2 16 QILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIR-------------------------------------- 57 (174)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCC--------------------------------------
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCc--------------------------------------
Confidence 345566666543 5679999999999999999999998887
Q ss_pred cceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCC-cccCHHHHHHhhhccCCCCC
Q 002359 394 GIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSH-RYIGSGEYIQMSGRAGRRGK 472 (931)
Q Consensus 394 gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~-~~~s~~~y~Qr~GRaGR~G~ 472 (931)
+.++||+|++.+|+.+++.|++|+++|||||+++++|||+|++++|| +||+... -+.+...|+||+|||||.|.
T Consensus 58 -a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v~~~GiDip~V~~Vi----~~~~~~~~~~~~~~~~iq~~GR~gR~~~ 132 (174)
T d1c4oa2 58 -ARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVA----ILDADKEGFLRSERSLIQTIGRAARNAR 132 (174)
T ss_dssp -EEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEE----ETTTTSCSGGGSHHHHHHHHGGGTTSTT
T ss_pred -eEEEecccchHHHHHHHHHHHCCCeEEEEeeeeeeeeccCCCCcEEE----EeccccccccchhHHHHHHhhhhhhcCC
Confidence 47899999999999999999999999999999999999999999999 6665432 25678899999999999875
Q ss_pred CCceEEEEEeCCc
Q 002359 473 DDRGICIIMVDEQ 485 (931)
Q Consensus 473 ~~~g~~ii~~~~~ 485 (931)
|.+++++...
T Consensus 133 ---g~~~~~~~~~ 142 (174)
T d1c4oa2 133 ---GEVWLYADRV 142 (174)
T ss_dssp ---CEEEEECSSC
T ss_pred ---CeeEEeecCC
Confidence 7777777543
No 22
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.83 E-value=7.1e-21 Score=185.98 Aligned_cols=123 Identities=23% Similarity=0.364 Sum_probs=110.9
Q ss_pred CCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhc
Q 002359 314 GSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKR 393 (931)
Q Consensus 314 ~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 393 (931)
..+...|++.+......++||||++++.++.++..|.+.++.
T Consensus 12 ~~K~~~L~~ll~~~~~~k~iIF~~~~~~~~~l~~~L~~~~~~-------------------------------------- 53 (168)
T d1t5ia_ 12 NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFP-------------------------------------- 53 (168)
T ss_dssp GGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCC--------------------------------------
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEeeeecchhhhhhhcccccc--------------------------------------
Confidence 445667777777777789999999999999999999887765
Q ss_pred cceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCC
Q 002359 394 GIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKD 473 (931)
Q Consensus 394 gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~ 473 (931)
+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|.+++|| +||. |.++..|+||+||+||.|.
T Consensus 54 -~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T~~~~~Gid~~~~~~vi----~~~~----p~~~~~yiqr~GR~gR~g~- 123 (168)
T d1t5ia_ 54 -AIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF----NYDM----PEDSDTYLHRVARAGRFGT- 123 (168)
T ss_dssp -EEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEE----ESSC----CSSHHHHHHHHHHHTGGGC-
T ss_pred -ccccccccchhhhhhhhhhhccccceeeeccccccchhhcccchhhh----hhhc----ccchhhHhhhhhhcccCCC-
Confidence 57899999999999999999999999999999999999999999999 7888 9999999999999999997
Q ss_pred CceEEEEEeCCc
Q 002359 474 DRGICIIMVDEQ 485 (931)
Q Consensus 474 ~~g~~ii~~~~~ 485 (931)
.|.++.++++.
T Consensus 124 -~g~~i~l~~~~ 134 (168)
T d1t5ia_ 124 -KGLAITFVSDE 134 (168)
T ss_dssp -CCEEEEEECSH
T ss_pred -ccEEEEEECch
Confidence 47888888764
No 23
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.82 E-value=3.3e-20 Score=181.09 Aligned_cols=131 Identities=21% Similarity=0.325 Sum_probs=105.1
Q ss_pred HHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccce
Q 002359 317 IFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIA 396 (931)
Q Consensus 317 ~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~ 396 (931)
+..+++.+......++||||++++.++.++..|...++. +.
T Consensus 20 ~~~L~~ll~~~~~~~~lIF~~~~~~~~~l~~~l~~~~~~---------------------------------------~~ 60 (168)
T d2rb4a1 20 YQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQ---------------------------------------VS 60 (168)
T ss_dssp HHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCC---------------------------------------EE
T ss_pred HHHHHHHHHhCCCCcEEEEcCHHHHHHHHHHHHHhcCCc---------------------------------------ce
Confidence 344555555556789999999999999999999887765 58
Q ss_pred eccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCC--cccCHHHHHHhhhccCCCCCCC
Q 002359 397 VHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSH--RYIGSGEYIQMSGRAGRRGKDD 474 (931)
Q Consensus 397 ~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~--~~~s~~~y~Qr~GRaGR~G~~~ 474 (931)
.+||+|++.+|..+++.|++|..++||||+++++|+|+|++++|| +||.... ...++.+|+||+||+||.|+
T Consensus 61 ~~hg~~~~~~R~~~~~~F~~g~~~ilv~Td~~~~Gid~~~v~~Vi----~yd~P~~~~~~~~~~~yihR~GR~gR~g~-- 134 (168)
T d2rb4a1 61 LLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVV----NFDLPVKQGEEPDYETYLHRIGRTGRFGK-- 134 (168)
T ss_dssp EECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEE----ESSCCC--CCSCCHHHHHHHHCBC----C--
T ss_pred ecccchhhHHHHHHhhhhcCCceeeeechhhhhhhhccccccEEE----eecCCCcccccCCHHHHHHHhhhcccCCC--
Confidence 899999999999999999999999999999999999999999999 6776221 12367899999999999998
Q ss_pred ceEEEEEeCCccCHHHHHh
Q 002359 475 RGICIIMVDEQMEMNTLKD 493 (931)
Q Consensus 475 ~g~~ii~~~~~~~~~~l~~ 493 (931)
.|.++.++++. +...+..
T Consensus 135 ~g~~i~~~~~~-d~~~l~~ 152 (168)
T d2rb4a1 135 KGLAFNMIEVD-ELPSLMK 152 (168)
T ss_dssp CEEEEEEECGG-GHHHHHH
T ss_pred ceEEEEEEcHH-HHHHHHH
Confidence 48888888765 4444443
No 24
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=99.82 E-value=5e-20 Score=180.81 Aligned_cols=124 Identities=21% Similarity=0.285 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHc--CCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhc
Q 002359 316 DIFKIVKMIMER--KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKR 393 (931)
Q Consensus 316 ~~~~ll~~l~~~--~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 393 (931)
.+..++..+.+. .+.++||||+++..++.++..|...|+.
T Consensus 16 qvd~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~-------------------------------------- 57 (181)
T d1t5la2 16 QIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIK-------------------------------------- 57 (181)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCC--------------------------------------
T ss_pred cHHHHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcc--------------------------------------
Confidence 345566666543 5678999999999999999999998876
Q ss_pred cceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCC-cccCHHHHHHhhhccCCCCC
Q 002359 394 GIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSH-RYIGSGEYIQMSGRAGRRGK 472 (931)
Q Consensus 394 gi~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~-~~~s~~~y~Qr~GRaGR~G~ 472 (931)
+.++||+|++.+|..+++.|++|+++|||||+++++|||+|++++|| +||.... -+.+...|+||+|||||.|.
T Consensus 58 -~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTdv~~rGiDip~v~~VI----~~d~p~~~~~~s~~~yi~R~GRagR~g~ 132 (181)
T d1t5la2 58 -VAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVA----ILDADKEGFLRSERSLIQTIGRAARNAN 132 (181)
T ss_dssp -EEEECSSCCHHHHHHHHHHHHHTSCSEEEESCCCSSSCCCTTEEEEE----ETTTTSCSGGGSHHHHHHHHGGGTTSTT
T ss_pred -eeEecCCccHHHHHHHHHHHHCCCCCEEEehhHHHccCCCCCCCEEE----EecCCcccccccHHHHHHHHHhhccccC
Confidence 58999999999999999999999999999999999999999999999 7777321 13578899999999999886
Q ss_pred CCceEEEEEeCCc
Q 002359 473 DDRGICIIMVDEQ 485 (931)
Q Consensus 473 ~~~g~~ii~~~~~ 485 (931)
|.++++....
T Consensus 133 ---~~~~~~~~~~ 142 (181)
T d1t5la2 133 ---GHVIMYADTI 142 (181)
T ss_dssp ---CEEEEECSSC
T ss_pred ---ceeEeecchh
Confidence 5666655443
No 25
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.77 E-value=1.3e-18 Score=176.23 Aligned_cols=139 Identities=21% Similarity=0.131 Sum_probs=110.9
Q ss_pred cCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC-CeEEEe
Q 002359 72 TYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMT 150 (931)
Q Consensus 72 ~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~vg~~t 150 (931)
...++|++||.+|+..+.++++.++.+|||+|||+++...+.. .+.++||++|+++|++|+.+++..++. .++...
T Consensus 66 ~~~~~Lr~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~Liv~p~~~L~~q~~~~~~~~~~~~~~~~~ 142 (206)
T d2fz4a1 66 DAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE---LSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFS 142 (206)
T ss_dssp CCCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHH---SCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEES
T ss_pred CCCCCcCHHHHHHHHHHHhCCCcEEEeCCCCCceehHHhHHHH---hcCceeEEEcccchHHHHHHHHHhhcccchhhcc
Confidence 3467899999999999999899999999999999987655543 367899999999999999999988766 567777
Q ss_pred cccccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCC
Q 002359 151 GDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATM 223 (931)
Q Consensus 151 Gd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~ 223 (931)
|+.. ...+++|+|++.+...... ..+++++||+||||++... .+..++..++ ....++||||+
T Consensus 143 ~~~~--~~~~i~i~t~~~~~~~~~~---~~~~~~lvIiDEaH~~~a~----~~~~i~~~~~-~~~~lgLTATl 205 (206)
T d2fz4a1 143 GRIK--ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAE----SYVQIAQMSI-APFRLGLTATF 205 (206)
T ss_dssp SSCB--CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTT----THHHHHHTCC-CSEEEEEEESC
T ss_pred cccc--cccccccceehhhhhhhHh---hCCcCCEEEEECCeeCCcH----HHHHHHhccC-CCcEEEEecCC
Confidence 6543 4567999999988755432 3457899999999999643 4566665554 45678999997
No 26
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}
Probab=99.77 E-value=1.2e-18 Score=184.59 Aligned_cols=147 Identities=17% Similarity=0.142 Sum_probs=116.8
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHH-hCCCEEEEEcCchhhHHHHHHHHHHhcC----CeEE
Q 002359 74 SFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFK----DVGL 148 (931)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l-~~~~rvl~l~P~kaL~~Q~~~~l~~~~~----~vg~ 148 (931)
+|+|+++|.+|+..+.++++.++.+|||+|||+++...+.... ..+.++||++|+++|++|++++|.+++. .++.
T Consensus 111 ~~~~rdyQ~~av~~~l~~~~~il~~pTGsGKT~i~~~i~~~~~~~~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~~~~~~~ 190 (282)
T d1rifa_ 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp ECCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred ccccchHHHHHHHHHHhcCCceeEEEcccCccHHHHHHHHHhhhcccceEEEEEcCchhHHHHHHHHHHhhcccccccee
Confidence 6889999999999998888999999999999999866554443 3467999999999999999999999865 3455
Q ss_pred Eeccccc----CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCC
Q 002359 149 MTGDVTL----SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 149 ~tGd~~~----~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~ 224 (931)
+.++... ....+++|+|++.+.++ ....++++++||+||||++. +..+..++..+.+....+|||||++
T Consensus 191 ~~~g~~~~~~~~~~~~i~i~t~qs~~~~---~~~~~~~f~~VIvDEaH~~~----a~~~~~il~~~~~~~~rlGlTaT~~ 263 (282)
T d1rifa_ 191 IGGGASKDDKYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCMFKFGLSGSLR 263 (282)
T ss_dssp CSTTCSSTTCCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCCEEEEECSSCC
T ss_pred ecceecccccccccceEEEEeeehhhhh---cccccCCCCEEEEECCCCCC----chhHHHHHHhccCCCeEEEEEeecC
Confidence 5554433 23578999999876543 23457789999999999986 6677777777765555699999997
Q ss_pred ChH
Q 002359 225 NAT 227 (931)
Q Consensus 225 n~~ 227 (931)
+..
T Consensus 264 ~~~ 266 (282)
T d1rifa_ 264 DGK 266 (282)
T ss_dssp TTS
T ss_pred CCC
Confidence 654
No 27
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=99.76 E-value=4.6e-18 Score=172.44 Aligned_cols=152 Identities=22% Similarity=0.313 Sum_probs=128.0
Q ss_pred CchhhhccCCCCCCHHHHHHHHHH----hcC--CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHH
Q 002359 65 YNGEMAKTYSFELDPFQRVSVACL----ERN--ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRE 138 (931)
Q Consensus 65 ~~~~~~~~~~f~l~~~Q~~ai~~l----~~g--~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~ 138 (931)
....+...+||++++-|.+++..+ .++ .+.+++|.||||||.+|+.++..++..|.++++++|+..|+.|.++.
T Consensus 44 ~~~~~~~~lP~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~ 123 (233)
T d2eyqa3 44 QYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDN 123 (233)
T ss_dssp HHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHH
T ss_pred HHHhhhhccccccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHHH
Confidence 456777889999999999999876 333 47899999999999999999999999999999999999999999999
Q ss_pred HHHhcC----CeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHH
Q 002359 139 LHQEFK----DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVW 203 (931)
Q Consensus 139 l~~~~~----~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~ 203 (931)
|++.|+ ++.+++|..+. +...+|+|+|--.+. ....++++++||+||-|+. |..-
T Consensus 124 ~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l~-----~~~~f~~LgLiIiDEeH~f-----g~kQ 193 (233)
T d2eyqa3 124 FRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRF-----GVRH 193 (233)
T ss_dssp HHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGS-----CHHH
T ss_pred HHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhhc-----cCCccccccceeeechhhh-----hhHH
Confidence 999876 67788887763 457899999987664 3345789999999999965 5556
Q ss_pred HHHHHhcCCCceEEEeccCCCCh
Q 002359 204 EESIIFLPPAIKMVFLSATMSNA 226 (931)
Q Consensus 204 ~~ii~~l~~~~q~v~lSAT~~n~ 226 (931)
.+.+.....++.++++|||+...
T Consensus 194 ~~~l~~~~~~~~~l~~SATPipr 216 (233)
T d2eyqa3 194 KERIKAMRANVDILTLTATPIPR 216 (233)
T ss_dssp HHHHHHHHTTSEEEEEESSCCCH
T ss_pred HHHHHhhCCCCCEEEEecchhHH
Confidence 66677667789999999998643
No 28
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=99.75 E-value=1.1e-18 Score=164.82 Aligned_cols=135 Identities=16% Similarity=0.156 Sum_probs=101.0
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHH-HhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecH
Q 002359 88 LERNESVLVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT 166 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~-l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp 166 (931)
+.+|++++++||||||||.++..++... ...+.++++++|+++|++|+++.+......+....+......+..+.+.|.
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKFHTQAFSAHGSGREVIDAMCH 83 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEEEESSCCCCCCCSSCCEEEEEH
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeeecchhHHHHHHHHhhhhhhhhcccccccccccccchhhhhH
Confidence 4678999999999999999887666544 467889999999999999999888666545555555555566778888998
Q ss_pred HHHHHHHhcCccccCcccEEEEeccccCCCCCchHH-HHHHHHhcCCCceEEEeccCCC
Q 002359 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVV-WEESIIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~-~~~ii~~l~~~~q~v~lSAT~~ 224 (931)
..+.+.... ...+.++++||+||||++.....+.. +...+. ..++.++++||||+|
T Consensus 84 ~~l~~~~~~-~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~-~~~~~~~l~lTATPp 140 (140)
T d1yksa1 84 ATLTYRMLE-PTRVVNWEVIIMDEAHFLDPASIAARGWAAHRA-RANESATILMTATPP 140 (140)
T ss_dssp HHHHHHHTS-SSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHH-HTTSCEEEEECSSCT
T ss_pred HHHHHHHhc-cccccceeEEEEccccccChhhHHHHHHHHHHh-hCCCCCEEEEEcCCC
Confidence 888765543 34578999999999999864322211 112222 246899999999997
No 29
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.74 E-value=5.5e-19 Score=165.24 Aligned_cols=101 Identities=23% Similarity=0.269 Sum_probs=87.1
Q ss_pred CCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHH
Q 002359 328 KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK 407 (931)
Q Consensus 328 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R 407 (931)
..+++||||+|++.|+.++..|...++. +..+||+|...
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~G~~---------------------------------------~~~~H~~~~~~-- 72 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVALGIN---------------------------------------AVAYYRGLDVS-- 72 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHHTCE---------------------------------------EEEECTTCCSC--
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhccccc---------------------------------------hhhhhccchhh--
Confidence 5578999999999999999999886665 57899999855
Q ss_pred HHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeC
Q 002359 408 ELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVD 483 (931)
Q Consensus 408 ~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~ 483 (931)
.|++|..+|||||+++++||| |+++.||+.+..|+. |.+..+|+||+||||| |.. |. +.+..
T Consensus 73 -----~~~~~~~~vlvaTd~~~~GiD-~~v~~Vi~~~~~~~~----P~~~~~y~qr~GR~gR-g~~--G~-~~~i~ 134 (138)
T d1jr6a_ 73 -----VIPTNGDVVVVATDALMTGFT-GDFDSVIDCNTSDGK----PQDAVSRTQRRGRTGR-GKP--GI-YRFVA 134 (138)
T ss_dssp -----CCTTSSCEEEEESSSSCSSSC-CCBSEEEECSEETTE----ECCHHHHHHHHTTBCS-SSC--EE-EEECC
T ss_pred -----hhhhhhcceeehhHHHHhccc-cccceEEEEEecCCC----CCCHHHHHhHhccccC-CCC--cE-EEEEc
Confidence 478999999999999999999 999999977777777 9999999999999999 875 64 33443
No 30
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.74 E-value=1.6e-18 Score=179.22 Aligned_cols=152 Identities=22% Similarity=0.325 Sum_probs=123.6
Q ss_pred CchhhhccCCCCCCHHHHHHHHHHh------cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHH
Q 002359 65 YNGEMAKTYSFELDPFQRVSVACLE------RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRE 138 (931)
Q Consensus 65 ~~~~~~~~~~f~l~~~Q~~ai~~l~------~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~ 138 (931)
+...+...+||+||+-|++|+..+. ...+.+++|.||||||.+|+.++..++..|.++++++||..|+.|.++.
T Consensus 72 l~~~f~~~LPFeLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~~La~Qh~~~ 151 (264)
T d1gm5a3 72 LAEEFIKSLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRR 151 (264)
T ss_dssp HHHHHHHHSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHH
T ss_pred HHHHHHhhccccCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhcccceeEEeehHhhhHHHHHH
Confidence 5678888999999999999998873 2347899999999999999999999999999999999999999999999
Q ss_pred HHHhcC----CeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHH
Q 002359 139 LHQEFK----DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVW 203 (931)
Q Consensus 139 l~~~~~----~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~ 203 (931)
|+++|+ .+.+++|+.+. +++++|+|||...+.. ...++++++||+||-|+.+-..|.
T Consensus 152 ~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~~-----~~~f~~LglviiDEqH~fgv~Qr~--- 223 (264)
T d1gm5a3 152 TVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQRE--- 223 (264)
T ss_dssp HHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC-----C---
T ss_pred HHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhcC-----CCCccccceeeeccccccchhhHH---
Confidence 999996 67889988763 4579999999875542 334779999999999988654432
Q ss_pred HHHHHhcCCCceEEEeccCCCCh
Q 002359 204 EESIIFLPPAIKMVFLSATMSNA 226 (931)
Q Consensus 204 ~~ii~~l~~~~q~v~lSAT~~n~ 226 (931)
.+..-..++.++++|||+...
T Consensus 224 --~l~~~~~~~~~l~~SATPipr 244 (264)
T d1gm5a3 224 --ALMNKGKMVDTLVMSATPIPR 244 (264)
T ss_dssp --CCCSSSSCCCEEEEESSCCCH
T ss_pred --HHHHhCcCCCEEEEECCCCHH
Confidence 233334578899999998543
No 31
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.70 E-value=3.6e-17 Score=154.01 Aligned_cols=127 Identities=17% Similarity=0.052 Sum_probs=99.4
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC-CeEEEecccccCCCCCeeEecHHH
Q 002359 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDVTLSPNASCLVMTTEI 168 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (931)
..+..++.||||||||+++...+ ...+.+++|++|+++|++|+++.+.+.++ ..+...++........+.++|++.
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~~~---~~~~~~vli~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPAAY---AAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTITTGSPITYSTYGK 83 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHH---HTTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEECCCCSEEEEEHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHH---HHcCCcEEEEcChHHHHHHHHHHHHHHhhccccccccccccccccceEEEeeee
Confidence 45678999999999998764433 46788999999999999999999999887 677777777777788899999987
Q ss_pred HHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcC--CCceEEEeccCC
Q 002359 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP--PAIKMVFLSATM 223 (931)
Q Consensus 169 L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~--~~~q~v~lSAT~ 223 (931)
+... ....++++++||+||+|++... ....+..++..+. ...+++++|||+
T Consensus 84 ~~~~---~~~~~~~~~~vIiDE~H~~~~~-~~~~~~~~l~~~~~~~~~~~l~~TATP 136 (136)
T d1a1va1 84 FLAD---GGCSGGAYDIIICDECHSTDAT-SILGIGTVLDQAETAGARLVVLATATP 136 (136)
T ss_dssp HHHT---TGGGGCCCSEEEEETTTCCSHH-HHHHHHHHHHHTTTTTCSEEEEEESSC
T ss_pred eccc---cchhhhcCCEEEEecccccCHH-HHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 7544 3345789999999999987532 2334555555543 467899999996
No 32
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.61 E-value=7.7e-16 Score=164.09 Aligned_cols=118 Identities=22% Similarity=0.286 Sum_probs=92.4
Q ss_pred HcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHH
Q 002359 326 ERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPV 405 (931)
Q Consensus 326 ~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~ 405 (931)
.....++||||+++..|+.++..|.+.++.... +. .......|++++..
T Consensus 158 ~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~---------------~~----------------g~~~~~~~~~~~~~ 206 (286)
T d1wp9a2 158 RKQNSKIIVFTNYRETAKKIVNELVKDGIKAKR---------------FV----------------GQASKENDRGLSQR 206 (286)
T ss_dssp HCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEE---------------EC----------------CSSCC-------CC
T ss_pred hCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEE---------------ee----------------ccccccccchhchH
Confidence 456679999999999999999999876665310 00 00123347788899
Q ss_pred HHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002359 406 IKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 406 ~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
+|..+++.|++|.++|||||+++++|||+|++++|| .||. |.++..|+||+||+||.+. |.+++++.+.
T Consensus 207 ~~~~~~~~F~~g~~~vLv~T~~~~~Gld~~~~~~Vi----~~d~----~~~~~~~~Qr~GR~gR~~~---~~~~~l~~~~ 275 (286)
T d1wp9a2 207 EQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVV----FYEP----VPSAIRSIQRRGRTGRHMP---GRVIILMAKG 275 (286)
T ss_dssp HHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEE----ESSC----CHHHHHHHHHHTTSCSCCC---SEEEEEEETT
T ss_pred HHHHHHHHHHcCCCcEEEEccceeccccCCCCCEEE----EeCC----CCCHHHHHHHHHhCCCCCC---CEEEEEEeCC
Confidence 999999999999999999999999999999999999 7888 8899999999999999764 6677777655
No 33
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.57 E-value=1.4e-15 Score=152.83 Aligned_cols=117 Identities=18% Similarity=0.244 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccc
Q 002359 316 DIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGI 395 (931)
Q Consensus 316 ~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi 395 (931)
++..+.+.+....+.++||||.++..++.+++.|. +
T Consensus 80 K~~~l~~ll~~~~~~k~lvf~~~~~~~~~l~~~l~--------------------------------------------~ 115 (200)
T d2fwra1 80 KIRKLREILERHRKDKIIIFTRHNELVYRISKVFL--------------------------------------------I 115 (200)
T ss_dssp HHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------------------------------------------C
T ss_pred HHHHHHHHHHhCCCCcEEEEeCcHHHHHHHHhhcC--------------------------------------------c
Confidence 45667777777777899999999999999887763 3
Q ss_pred eeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCC-
Q 002359 396 AVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDD- 474 (931)
Q Consensus 396 ~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~- 474 (931)
..+||++++.+|+.+++.|++|.++|||||+++++|||+|.+++|| .||+ |.++..|+||+||++|.|+++
T Consensus 116 ~~i~g~~~~~~R~~~l~~F~~~~~~vLv~~~~~~~Gidl~~~~~vi----~~~~----~~s~~~~~Q~iGR~~R~~~~k~ 187 (200)
T d2fwra1 116 PAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGV----IMSG----SGSAREYIQRLGRILRPSKGKK 187 (200)
T ss_dssp CBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEE----EECC----SSCCHHHHHHHHHSBCCCTTTC
T ss_pred ceeeCCCCHHHHHHHHHHhhcCCeeeeeecchhhcccCCCCCCEEE----EeCC----CCCHHHHHHHHHhcCCCCCCCc
Confidence 5689999999999999999999999999999999999999999999 6676 889999999999999999864
Q ss_pred ceEEEEEeCC
Q 002359 475 RGICIIMVDE 484 (931)
Q Consensus 475 ~g~~ii~~~~ 484 (931)
.++++-++..
T Consensus 188 ~~~i~~~v~~ 197 (200)
T d2fwra1 188 EAVLYELISR 197 (200)
T ss_dssp CEEEEEEEEC
T ss_pred EEEEEEEecC
Confidence 3555555543
No 34
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.53 E-value=3.2e-15 Score=148.51 Aligned_cols=82 Identities=27% Similarity=0.485 Sum_probs=73.1
Q ss_pred ceeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCC
Q 002359 395 IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDD 474 (931)
Q Consensus 395 i~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~ 474 (931)
++++||.|++.+|+.++..|++|+++|||||+++++|||+|++++|| .||.. ....+.|.|..||+||.|.
T Consensus 67 v~~lHG~m~~~eke~~m~~F~~g~~~iLVaTtViE~GIDip~a~~ii----i~~a~---~fglsqlhQlrGRvGR~~~-- 137 (206)
T d1gm5a4 67 LGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMV----IENPE---RFGLAQLHQLRGRVGRGGQ-- 137 (206)
T ss_dssp BCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEE----BCSCS---SSCTTHHHHHHHTSCCSST--
T ss_pred EEEEeecccHHHHHHHHHHHHCCCEEEEEEehhhhccccccCCcEEE----EEccC---CccHHHHHhhhhheeeccc--
Confidence 78999999999999999999999999999999999999999999888 55552 3467788999999999998
Q ss_pred ceEEEEEeCCc
Q 002359 475 RGICIIMVDEQ 485 (931)
Q Consensus 475 ~g~~ii~~~~~ 485 (931)
.|.|++++++.
T Consensus 138 ~~~~~l~~~~~ 148 (206)
T d1gm5a4 138 EAYCFLVVGDV 148 (206)
T ss_dssp TCEEECCCCSC
T ss_pred cceeEeeeccc
Confidence 58999988764
No 35
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.52 E-value=1.4e-15 Score=155.93 Aligned_cols=99 Identities=17% Similarity=0.169 Sum_probs=84.5
Q ss_pred CCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHH-
Q 002359 329 FQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK- 407 (931)
Q Consensus 329 ~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R- 407 (931)
++++||||+|++.|+.++..|++.|++ +..+||++++..|
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~~Gi~---------------------------------------a~~~Hgglsq~~R~ 76 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVALGIN---------------------------------------AVAYYRGLDVSVIP 76 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCC---------------------------------------EEEECTTSCGGGSC
T ss_pred CCCEEEECCcHHHHHHHHHHHHHCCCC---------------------------------------EEEEeCCchHHHHH
Confidence 568999999999999999999988876 4789999999876
Q ss_pred ---------HHHHHHHhcCCceEEEecchhhc---ccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCc
Q 002359 408 ---------ELVELLFQEGLVKALFATETFAM---GLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDR 475 (931)
Q Consensus 408 ---------~~v~~~F~~g~i~vLvaT~~la~---GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~ 475 (931)
..+++.|.+|.+++||+|+++++ |+|++.+.+|| +||. |.|+++|+||+||+|| |++|.
T Consensus 77 ~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giDid~V~~VI----~~d~----P~SvesyIQRiGRTGR-Gr~G~ 147 (299)
T d1a1va2 77 TSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIE----TTTL----PQDAVSRTQRRGRTGR-GKPGI 147 (299)
T ss_dssp SSSSEEEEECTTC---CCCCBSEEEECCEEEEEEEECCCSSSCEEE----EEEE----ECBHHHHHHHHTTBCS-SSCEE
T ss_pred hccchHHHHHHHHHHHhcCCCcEEEEEeehhccCCCCCCCcceEEE----eCCC----CCCHHHHHhhccccCC-CCCce
Confidence 45778899999999999999998 67888888899 6776 9999999999999999 87643
No 36
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=99.47 E-value=1.8e-13 Score=134.22 Aligned_cols=112 Identities=18% Similarity=0.227 Sum_probs=93.7
Q ss_pred CCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHH
Q 002359 328 KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK 407 (931)
Q Consensus 328 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R 407 (931)
.++++.+.|+..+..+.++..+.+.-.. ..|+++||.|++.++
T Consensus 30 rGgQvy~V~p~I~~~e~~~~~l~~~~p~-------------------------------------~~i~~lHGkm~~~ek 72 (211)
T d2eyqa5 30 RGGQVYYLYNDVENIQKAAERLAELVPE-------------------------------------ARIAIGHGQMREREL 72 (211)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTT-------------------------------------SCEEECCSSCCHHHH
T ss_pred cCCeEEEEEcCccchhhHHHHHHHhCCc-------------------------------------eEEEEEEeccCHHHH
Confidence 5678999999998888888777552111 138999999999999
Q ss_pred HHHHHHHhcCCceEEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCceEEEEEeCCc
Q 002359 408 ELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 408 ~~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~g~~ii~~~~~ 485 (931)
+.++..|.+|+++|||||.+++.|||+|+++++|. +|.. ....+++.|..||+||.+. .|.|+++.+..
T Consensus 73 e~im~~F~~g~~~ILv~TtvIEvGiDvpnA~~iiI----~~a~---rfGLaQLhQLRGRVGR~~~--~s~c~l~~~~~ 141 (211)
T d2eyqa5 73 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII----ERAD---HFGLAQLHQLRGRVGRSHH--QAYAWLLTPHP 141 (211)
T ss_dssp HHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE----TTTT---SSCHHHHHHHHTTCCBTTB--CEEEEEEECCG
T ss_pred HHHHHHHHcCCcceEEEehhhhhccCCCCCcEEEE----ecch---hccccccccccceeeecCc--cceEEEEecCC
Confidence 99999999999999999999999999999998773 3332 4567889999999999987 59999998653
No 37
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.37 E-value=3.4e-14 Score=147.68 Aligned_cols=104 Identities=14% Similarity=0.122 Sum_probs=83.0
Q ss_pred HHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceecc
Q 002359 320 IVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHH 399 (931)
Q Consensus 320 ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~h 399 (931)
+...+... +.++||||++++.|+.++..|.. .+|
T Consensus 17 l~~~l~~~-~~~~iif~~~~~~~~~l~~~l~~---------------------------------------------~~h 50 (248)
T d1gkub2 17 LSSILEKL-GTGGIIYARTGEEAEEIYESLKN---------------------------------------------KFR 50 (248)
T ss_dssp THHHHTTS-CSCEEEEESSHHHHHHHHHTTTT---------------------------------------------SSC
T ss_pred HHHHHHHh-CCCEEEEECCHHHHHHHHHHHHH---------------------------------------------hcc
Confidence 34444333 46899999999999999999864 269
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEec----chhhcccCCCC-cEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCC
Q 002359 400 SGLLPVIKELVELLFQEGLVKALFAT----ETFAMGLNMPA-KTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDD 474 (931)
Q Consensus 400 g~l~~~~R~~v~~~F~~g~i~vLvaT----~~la~GIdip~-~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~ 474 (931)
|++++.+|..+++.|++|.++||||| +++++|||+|. +++|| +||. |. |.|++||+||.|..
T Consensus 51 g~~~~~~R~~~~~~f~~g~~~vLVaT~a~~~v~~rGlDip~~v~~VI----~~d~----P~----~~~r~gR~~R~g~~- 117 (248)
T d1gkub2 51 IGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAV----FVGC----PS----FRVTIEDIDSLSPQ- 117 (248)
T ss_dssp EEECTTSSSHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEE----EESC----CE----EEEECSCGGGSCHH-
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEeccccchhhhccCccccccEEE----EeCC----Cc----chhhhhhhhccCcc-
Confidence 99999999999999999999999999 77899999996 99999 7887 53 88999999999974
Q ss_pred ceEEEEEeC
Q 002359 475 RGICIIMVD 483 (931)
Q Consensus 475 ~g~~ii~~~ 483 (931)
|.++++..
T Consensus 118 -~~~~~~~~ 125 (248)
T d1gkub2 118 -MVKLLAYL 125 (248)
T ss_dssp -HHHHHHTT
T ss_pred -eEeeeecc
Confidence 44444433
No 38
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=99.23 E-value=5.9e-11 Score=121.29 Aligned_cols=153 Identities=14% Similarity=0.125 Sum_probs=104.7
Q ss_pred CCCHHHHHHHHHH----hcCCcEEEEcCCCCCcHHHHHHHHHHHHhC--CCEEEEEcCchhhHHHHHHHHHHhcCCe--E
Q 002359 76 ELDPFQRVSVACL----ERNESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSNQKYRELHQEFKDV--G 147 (931)
Q Consensus 76 ~l~~~Q~~ai~~l----~~g~~vlv~apTGsGKTl~~~l~i~~~l~~--~~rvl~l~P~kaL~~Q~~~~l~~~~~~v--g 147 (931)
+|.|||.+++..+ ..+..++++.++|.|||+.+...+...... ..++||++|. .+..|+.+++.+++... .
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~~~~~~~~LIv~p~-~l~~~W~~e~~~~~~~~~~~ 90 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL-SVLKNWEEELSKFAPHLRFA 90 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHHHCTTSCEE
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhhhcccccccceecch-hhhhHHHHHHHhhcccccce
Confidence 5899999999754 456679999999999999986555444433 3689999994 78899999999887733 2
Q ss_pred EEecccc--cCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCC-
Q 002359 148 LMTGDVT--LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMS- 224 (931)
Q Consensus 148 ~~tGd~~--~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~- 224 (931)
...+... ...+.+++++|++.+.+.-. ..--.+++||+||+|++.+.. ......+..+. ....++||||+-
T Consensus 91 ~~~~~~~~~~~~~~~vvi~~~~~~~~~~~---l~~~~~~~vI~DEah~~k~~~--s~~~~~~~~l~-a~~r~~LTgTPi~ 164 (230)
T d1z63a1 91 VFHEDRSKIKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SKYRIALTGTPIE 164 (230)
T ss_dssp ECSSSTTSCCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EEEEEEECSSCST
T ss_pred eeccccchhhccCcCEEEeeHHHHHhHHH---HhcccceEEEEEhhhcccccc--hhhhhhhhhhc-cceEEEEecchHH
Confidence 2222211 12357999999998764321 111257889999999998653 33334455554 455789999983
Q ss_pred -ChHHHHHHHHh
Q 002359 225 -NATQFAEWICH 235 (931)
Q Consensus 225 -n~~e~~~~l~~ 235 (931)
+..++...+..
T Consensus 165 n~~~dl~~ll~~ 176 (230)
T d1z63a1 165 NKVDDLWSIMTF 176 (230)
T ss_dssp TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 44455555543
No 39
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=99.21 E-value=8.2e-11 Score=125.18 Aligned_cols=143 Identities=23% Similarity=0.209 Sum_probs=100.1
Q ss_pred CCCHHHHHHHHHH---------hcCCcEEEEcCCCCCcHHHHHHHHHHHHhC-------CCEEEEEcCchhhHHHHHHHH
Q 002359 76 ELDPFQRVSVACL---------ERNESVLVSAHTSAGKTAVAEYAIAMAFRD-------KQRVIYTSPLKALSNQKYREL 139 (931)
Q Consensus 76 ~l~~~Q~~ai~~l---------~~g~~vlv~apTGsGKTl~~~l~i~~~l~~-------~~rvl~l~P~kaL~~Q~~~~l 139 (931)
.|.|||.+++..+ ..+..++++-.+|.|||+.+.-.+...+.. ..++||++|. .|..||.+++
T Consensus 55 ~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~-sl~~qW~~Ei 133 (298)
T d1z3ix2 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (298)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhcccccCCCCcEEEEccc-hhhHHHHHHH
Confidence 5899999999865 235578999999999998765444333322 2469999998 5889999999
Q ss_pred HHhcC---CeEEEecccc---------------cCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchH
Q 002359 140 HQEFK---DVGLMTGDVT---------------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGV 201 (931)
Q Consensus 140 ~~~~~---~vg~~tGd~~---------------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~ 201 (931)
.++++ .+..++|+.. .....+++|+|++.+......- .-.++++||+||+|++.+. ..
T Consensus 134 ~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~~l--~~~~~~~vI~DEaH~ikn~--~s 209 (298)
T d1z3ix2 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVL--HKGKVGLVICDEGHRLKNS--DN 209 (298)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTT--TTSCCCEEEETTGGGCCTT--CH
T ss_pred HhhcCCceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchhcc--cccceeeeecccccccccc--cc
Confidence 99876 2334444331 1224679999999887654321 1236789999999999865 33
Q ss_pred HHHHHHHhcCCCceEEEeccCCC
Q 002359 202 VWEESIIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 202 ~~~~ii~~l~~~~q~v~lSAT~~ 224 (931)
.....+..+. ....++||||+-
T Consensus 210 ~~~~a~~~l~-~~~rllLTGTPi 231 (298)
T d1z3ix2 210 QTYLALNSMN-AQRRVLISGTPI 231 (298)
T ss_dssp HHHHHHHHHC-CSEEEEECSSCS
T ss_pred hhhhhhhccc-cceeeeecchHH
Confidence 3344444453 456799999983
No 40
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=99.10 E-value=7.4e-11 Score=123.55 Aligned_cols=100 Identities=21% Similarity=0.158 Sum_probs=78.1
Q ss_pred CCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHHHH
Q 002359 329 FQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKE 408 (931)
Q Consensus 329 ~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~R~ 408 (931)
.++++|||+|...++.++..|.+.|+. |.++||.+...+++
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~g~~---------------------------------------V~~l~~~~~~~e~~ 76 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKAGKS---------------------------------------VVVLNRKTFEREYP 76 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCC---------------------------------------EEECCSSSCC----
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCCe---------------------------------------EEEEcCcCcHhHHh
Confidence 578999999999999999999886654 78999999987765
Q ss_pred HHHHHHhcCCceEEEecchhhcccCCCCcEEEEecc-----eecCCCC------CcccCHHHHHHhhhccCCCCC
Q 002359 409 LVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAV-----KKWDGDS------HRYIGSGEYIQMSGRAGRRGK 472 (931)
Q Consensus 409 ~v~~~F~~g~i~vLvaT~~la~GIdip~~~vVI~~~-----~~~d~~~------~~~~s~~~y~Qr~GRaGR~G~ 472 (931)
.|++|..++||||+++++|+|++ +..||... ..||+.. ..|++.++..||.||+||.+.
T Consensus 77 ----~~~~~~~~~~~~t~~~~~~~~~~-~~~vid~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~ 146 (299)
T d1yksa2 77 ----TIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPN 146 (299)
T ss_dssp --------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred ----hhhcCCcCEEEEechhhhceecC-ceEEEecCceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccCC
Confidence 47889999999999999999995 88887543 2466642 346899999999999999864
No 41
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=99.10 E-value=3.5e-10 Score=121.83 Aligned_cols=120 Identities=11% Similarity=0.059 Sum_probs=100.7
Q ss_pred HHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceec
Q 002359 319 KIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVH 398 (931)
Q Consensus 319 ~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~ 398 (931)
.++..+....+.++|||++.+...+.+...|...++. ...+
T Consensus 108 ~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~---------------------------------------~~~l 148 (346)
T d1z3ix1 108 YILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYL---------------------------------------YVRL 148 (346)
T ss_dssp HHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCC---------------------------------------EEEE
T ss_pred HHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhcc---------------------------------------cccc
Confidence 4444444456789999999999999988888765544 4678
Q ss_pred cCCCCHHHHHHHHHHHhcCCce---EEEecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCCCCCCc
Q 002359 399 HSGLLPVIKELVELLFQEGLVK---ALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDR 475 (931)
Q Consensus 399 hg~l~~~~R~~v~~~F~~g~i~---vLvaT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~G~~~~ 475 (931)
||+++..+|..+++.|+++... +|++|.+.+.|+|++.++.|| .||+ ++++..+.|++||+.|.|+...
T Consensus 149 ~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi----~~d~----~wnp~~~~Qa~~R~~R~GQ~~~ 220 (346)
T d1z3ix1 149 DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLV----MFDP----DWNPANDEQAMARVWRDGQKKT 220 (346)
T ss_dssp CSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEE----ECSC----CSSHHHHHHHHTTSSSTTCCSC
T ss_pred ccchhHHHHHHHHHhhhcccccceeeeecchhhhhccccccceEEE----EecC----CCccchHhHhhhcccccCCCCc
Confidence 9999999999999999976543 677999999999999999999 6777 8899999999999999999887
Q ss_pred eEEEEEeCCc
Q 002359 476 GICIIMVDEQ 485 (931)
Q Consensus 476 g~~ii~~~~~ 485 (931)
..++.+....
T Consensus 221 V~v~rli~~~ 230 (346)
T d1z3ix1 221 CYIYRLLSTG 230 (346)
T ss_dssp EEEEEEEETT
T ss_pred eEEEEEEeCC
Confidence 7777777655
No 42
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=98.99 E-value=5.4e-10 Score=115.04 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=83.4
Q ss_pred CHHHHHHHHHH--cCCCcEEEEecCHHHHHHHHHHhccC-CCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhh
Q 002359 316 DIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKL-DFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLK 392 (931)
Q Consensus 316 ~~~~ll~~l~~--~~~~~~IVF~~sr~~~~~la~~L~~~-~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~ 392 (931)
++..+++.+.. .++.++||||+.+...+.+...+... +.
T Consensus 70 K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~-------------------------------------- 111 (244)
T d1z5za1 70 KMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNT-------------------------------------- 111 (244)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCS--------------------------------------
T ss_pred HHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccc--------------------------------------
Confidence 45555555543 35679999999999998887776431 22
Q ss_pred ccceeccCCCCHHHHHHHHHHHhcC-CceEEE-ecchhhcccCCCCcEEEEecceecCCCCCcccCHHHHHHhhhccCCC
Q 002359 393 RGIAVHHSGLLPVIKELVELLFQEG-LVKALF-ATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRR 470 (931)
Q Consensus 393 ~gi~~~hg~l~~~~R~~v~~~F~~g-~i~vLv-aT~~la~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRaGR~ 470 (931)
.+..+||++++.+|+.+.+.|+++ ..++|+ +|.+.+.|+|++.+++|| .||. ++++..+.|+.||+.|.
T Consensus 112 -~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~~~g~Glnl~~a~~vi----~~~~----~wn~~~~~Qa~~R~~R~ 182 (244)
T d1z5za1 112 -EVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI----HFDR----WWNPAVEDQATDRVYRI 182 (244)
T ss_dssp -CCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEE----ECSC----CSCTTTC----------
T ss_pred -eEEEEecccchhccchhhhhhhccccchhccccccccccccccchhhhhh----hcCc----hhhhHHHhhhcceeeec
Confidence 256789999999999999999876 467665 557899999999999999 6666 78888899999999999
Q ss_pred CCCCceEEEEEeCCc
Q 002359 471 GKDDRGICIIMVDEQ 485 (931)
Q Consensus 471 G~~~~g~~ii~~~~~ 485 (931)
|+.....++.+....
T Consensus 183 Gq~~~v~i~~l~~~~ 197 (244)
T d1z5za1 183 GQTRNVIVHKLISVG 197 (244)
T ss_dssp ----CCEEEEEEETT
T ss_pred CCCCceEEEEEeeCC
Confidence 987777777666554
No 43
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=98.64 E-value=8e-08 Score=90.46 Aligned_cols=119 Identities=17% Similarity=0.160 Sum_probs=83.3
Q ss_pred HHHHHHHHH--cCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccc
Q 002359 318 FKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGI 395 (931)
Q Consensus 318 ~~ll~~l~~--~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi 395 (931)
..+++.+.+ ..+.|+||++.|...++.++..|.+.++..
T Consensus 21 ~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h--------------------------------------- 61 (175)
T d1tf5a4 21 KAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPH--------------------------------------- 61 (175)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCC---------------------------------------
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCc---------------------------------------
Confidence 344444432 356899999999999999999999877764
Q ss_pred eeccCCCCHHHHHHHHHHHhcCCceEEEecchhhcccCCCC--------cEEEEecceecCCCCCcccCHHHHHHhhhcc
Q 002359 396 AVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPA--------KTVVFTAVKKWDGDSHRYIGSGEYIQMSGRA 467 (931)
Q Consensus 396 ~~~hg~l~~~~R~~v~~~F~~g~i~vLvaT~~la~GIdip~--------~~vVI~~~~~~d~~~~~~~s~~~y~Qr~GRa 467 (931)
.++++.....+-+.+-+.-..| .|.|||++++||.|+.- =-+||. ++++-+.....|..||+
T Consensus 62 ~vLnAk~~~~Ea~II~~Ag~~g--~VtIATNmAGRGtDikl~~~v~~~GGLhVI~--------t~~~~s~Rid~Ql~GR~ 131 (175)
T d1tf5a4 62 QVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVG--------TERHESRRIDNQLRGRS 131 (175)
T ss_dssp EEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEE--------SSCCSSHHHHHHHHTTS
T ss_pred eeehhhhHHHHHHHHHhccCCC--ceeehhhHHHcCCCccchHHHHhCCCcEEEE--------eccCcchhHHHHHhcch
Confidence 4566665433333333332333 69999999999999852 114552 34477888999999999
Q ss_pred CCCCCCCceEEEEEeCCc
Q 002359 468 GRRGKDDRGICIIMVDEQ 485 (931)
Q Consensus 468 GR~G~~~~g~~ii~~~~~ 485 (931)
||.|..|....|+-.++.
T Consensus 132 gRQGdpGs~~~~~sleD~ 149 (175)
T d1tf5a4 132 GRQGDPGITQFYLSMEDE 149 (175)
T ss_dssp SGGGCCEEEEEEEETTSS
T ss_pred hhhCCCcccEEEEEcCHH
Confidence 999998766666655543
No 44
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=98.06 E-value=4.6e-06 Score=83.27 Aligned_cols=127 Identities=16% Similarity=0.175 Sum_probs=95.3
Q ss_pred hhccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhc---C-
Q 002359 69 MAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEF---K- 144 (931)
Q Consensus 69 ~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~---~- 144 (931)
....++..+++.|.-.--.+.+|+ +....||-|||+++.+|+...--.|+.|-+++..--||.-=++++...| |
T Consensus 73 akRtlG~RhyDVQLiGgi~L~~G~--iaem~TGEGKTL~a~l~a~l~al~g~~vhvvTvNdyLA~RDae~m~~iy~~lGl 150 (273)
T d1tf5a3 73 SRRVTGMFPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGL 150 (273)
T ss_dssp HHHHHSCCCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhceEEehhHHHHHHHHHhhh--heeecCCCcchhHHHHHHHHHHhcCCCceEEecCccccchhhhHHhHHHHHcCC
Confidence 334568889999988877777775 8999999999999999888777788889999999999987666665554 4
Q ss_pred CeEEEecccccCC-----CCCeeEecHHHHH-HHHh------cCccccCcccEEEEeccccCC-CC
Q 002359 145 DVGLMTGDVTLSP-----NASCLVMTTEILR-GMLY------RGSEVLKEVAWVIFDEIHYMK-DR 197 (931)
Q Consensus 145 ~vg~~tGd~~~~~-----~~~IlV~Tpe~L~-~~l~------~~~~~l~~l~~vViDEaH~l~-~~ 197 (931)
.||+.+.+.+... .++|+.+|...+- +.|. ......+.+.+.|+||||.++ |.
T Consensus 151 svg~~~~~~~~~~r~~~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiliDe 216 (273)
T d1tf5a3 151 TVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDE 216 (273)
T ss_dssp CEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTT
T ss_pred CccccccccCHHHHHHHhhCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhhhhc
Confidence 7777776654322 5899999996553 2221 222346789999999999664 44
No 45
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
Probab=97.97 E-value=2.1e-05 Score=84.10 Aligned_cols=138 Identities=14% Similarity=0.164 Sum_probs=83.5
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHH--HHHH--hCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecc
Q 002359 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAI--AMAF--RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGD 152 (931)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i--~~~l--~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd 152 (931)
..+.|++|+..+..++-+++.||.|+|||.+....+ +... ..+.++++++||-.-+....+........++.....
T Consensus 149 ~~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~~~~~~~~ 228 (359)
T d1w36d1 149 EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 228 (359)
T ss_dssp SCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCC
T ss_pred cccHHHHHHHHHHcCCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcHHHHHHHHHHHHHHHhhcCchhhh
Confidence 788999999999888999999999999998753322 2222 356799999999988887766654433222111100
Q ss_pred ccc-CC---C-CCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEec
Q 002359 153 VTL-SP---N-ASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLS 220 (931)
Q Consensus 153 ~~~-~~---~-~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lS 220 (931)
... .. . ...+-.+++. ..+.........+++||+||+-++. ...+..++..++++.++|++.
T Consensus 229 ~~~~~~~~~t~~~ll~~~~~~--~~~~~~~~~~l~~d~lIIDEaSmv~----~~l~~~ll~~~~~~~~lILvG 295 (359)
T d1w36d1 229 KKRIPEDASTLHRLLGAQPGS--QRLRHHAGNPLHLDVLVVDEASMID----LPMMSRLIDALPDHARVIFLG 295 (359)
T ss_dssp CCSCSCCCBTTTSCC-------------CTTSCCSCSEEEECSGGGCB----HHHHHHHHHTCCTTCEEEEEE
T ss_pred hhhhhhhhhHHHHHHhhhhcc--hHHHHhhhcccccceeeehhhhccC----HHHHHHHHHHhcCCCEEEEEC
Confidence 000 00 0 1111111111 0111222334578999999999875 345667777788888888764
No 46
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.92 E-value=7.7e-06 Score=81.98 Aligned_cols=123 Identities=16% Similarity=0.112 Sum_probs=92.7
Q ss_pred ccCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhc---C-Ce
Q 002359 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEF---K-DV 146 (931)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~---~-~v 146 (931)
...+..+++.|.-.--.+.+ .-+....||-|||+++.+|++...-.|+.|-+++..--|+.-=++++...| + .|
T Consensus 92 RtlGmRhyDVQLiGgi~l~~--g~iaem~TGEGKTL~a~l~a~l~al~g~~vhvvTvNdyLA~RDa~~m~~~y~~lGlsv 169 (288)
T d1nkta3 92 RVLDQRPFDVQVMGAAALHL--GNVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQV 169 (288)
T ss_dssp HHHSCCCCHHHHHHHHHHHT--TEEEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCE
T ss_pred hhccceeeeehhHHHHHHhh--hhhhcccCCCchhHHHHHHHHHHHhcCCCeEEEecCchhhhhhHHHHHHHHHHhCCCc
Confidence 45577788999877666655 458999999999999999988877788899999999999987666665554 4 78
Q ss_pred EEEecccccCC-----CCCeeEecHHHHH-HHHh------cCccccCcccEEEEeccccCC
Q 002359 147 GLMTGDVTLSP-----NASCLVMTTEILR-GMLY------RGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 147 g~~tGd~~~~~-----~~~IlV~Tpe~L~-~~l~------~~~~~l~~l~~vViDEaH~l~ 195 (931)
|+++.+.+... .++|+.+|...+- +.|. ......+.+.+.|+||||.++
T Consensus 170 g~~~~~~~~~~~~~~Y~~di~Y~t~~e~gfDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiL 230 (288)
T d1nkta3 170 GVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSIL 230 (288)
T ss_dssp EECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHH
T ss_pred CcccccCChHHHHHHhhcccccccHHHHhhhhhhhhhccChhhhcccCCcEEEEEcccccc
Confidence 88877665322 5899999996543 2221 223346788999999999664
No 47
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.73 E-value=0.00014 Score=69.06 Aligned_cols=77 Identities=19% Similarity=0.151 Sum_probs=53.9
Q ss_pred CHHHHHHHHHH--cCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhc
Q 002359 316 DIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKR 393 (931)
Q Consensus 316 ~~~~ll~~l~~--~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 393 (931)
++..+++.+.. ..+.|+||.+.|...++.++..|.+.++..
T Consensus 19 K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h------------------------------------- 61 (219)
T d1nkta4 19 KYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPH------------------------------------- 61 (219)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC-------------------------------------
T ss_pred HHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccch-------------------------------------
Confidence 34445554432 367899999999999999999998887764
Q ss_pred cceeccCCCCHHHHHHHHHHHhcCC-ceEEEecchhhcccCC
Q 002359 394 GIAVHHSGLLPVIKELVELLFQEGL-VKALFATETFAMGLNM 434 (931)
Q Consensus 394 gi~~~hg~l~~~~R~~v~~~F~~g~-i~vLvaT~~la~GIdi 434 (931)
.++++.-. +|+.-+. -+.|. -.|-|||++++||.|+
T Consensus 62 --~vLNAK~h--erEAeII-AqAG~~GaVTIATNMAGRGTDI 98 (219)
T d1nkta4 62 --NVLNAKYH--EQEATII-AVAGRRGGVTVATNMAGRGTDI 98 (219)
T ss_dssp --EEECSSCH--HHHHHHH-HTTTSTTCEEEEETTCSTTCCC
T ss_pred --hccchhhH--HHHHHHH-HhcccCCcEEeeccccCCCCce
Confidence 35555432 3333222 23443 3588999999999999
No 48
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}
Probab=97.32 E-value=0.00011 Score=76.63 Aligned_cols=84 Identities=20% Similarity=0.188 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHh----CCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEec
Q 002359 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR----DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTG 151 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~----~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tG 151 (931)
+|+|-|.+|+.. ...+++|.|+.|||||.+...-+...+. +..+++|+++|+++++.+...+.+.++.
T Consensus 1 ~L~~eQ~~av~~--~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~tn~a~~~i~~~~~~~~~~------ 72 (306)
T d1uaaa1 1 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR------ 72 (306)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCT------
T ss_pred CcCHHHHHHHhC--CCCCEEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCcHHHHHHHHHHHHHhcCc------
Confidence 478999999975 3467999999999999987665555543 2358999999999999998888876542
Q ss_pred ccccCCCCCeeEecHHHHHH
Q 002359 152 DVTLSPNASCLVMTTEILRG 171 (931)
Q Consensus 152 d~~~~~~~~IlV~Tpe~L~~ 171 (931)
.....+-+.|...+..
T Consensus 73 ----~~~~~~~~~t~~~~~~ 88 (306)
T d1uaaa1 73 ----KEARGLMISTFHTLGL 88 (306)
T ss_dssp ----TTTTTSEEEEHHHHHH
T ss_pred ----cccccceeeehHHHHH
Confidence 2234556778776643
No 49
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=97.01 E-value=0.00051 Score=71.93 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCC----CEEEEEcCchhhHHHHHHHHHHhcCCeEEEec
Q 002359 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK----QRVIYTSPLKALSNQKYRELHQEFKDVGLMTG 151 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~----~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tG 151 (931)
.|++-|.+++.. .+..++|.|+.|||||.+....++..+..+ .+++++++++.+++.....+......
T Consensus 11 ~L~~eQ~~~v~~--~~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t~~aa~~~~~~~~~~~~~------ 82 (318)
T d1pjra1 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGG------ 82 (318)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGG------
T ss_pred hCCHHHHHHHhC--CCCCEEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEeccHHHHHHHHHHHHhhccc------
Confidence 489999999985 345699999999999999877777666543 48999999999999999888776431
Q ss_pred ccccCCCCCeeEecHHHHHHH
Q 002359 152 DVTLSPNASCLVMTTEILRGM 172 (931)
Q Consensus 152 d~~~~~~~~IlV~Tpe~L~~~ 172 (931)
......|.|...+...
T Consensus 83 -----~~~~~~i~T~hs~~~~ 98 (318)
T d1pjra1 83 -----AAEDVWISTFHSMCVR 98 (318)
T ss_dssp -----GGTTSEEEEHHHHHHH
T ss_pred -----ccccceeecHHHHHHH
Confidence 1123467888777543
No 50
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=96.34 E-value=0.0043 Score=60.27 Aligned_cols=133 Identities=10% Similarity=0.064 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHH----hcC---CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHh-cCCeE
Q 002359 76 ELDPFQRVSVACL----ERN---ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE-FKDVG 147 (931)
Q Consensus 76 ~l~~~Q~~ai~~l----~~g---~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~-~~~vg 147 (931)
.++|||..++..+ ..+ +.+++.||.|+|||..+...+...+.......- |.. . ..-+..+... .+++-
T Consensus 2 ~~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~--~~~-~-~~~~~~i~~~~~~~~~ 77 (207)
T d1a5ta2 2 RWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHK--SCG-H-CRGCQLMQAGTHPDYY 77 (207)
T ss_dssp CCCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTB--CCS-C-SHHHHHHHHTCCTTEE
T ss_pred CCCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcccccccccc--ccc-c-cchhhhhhhccccccc
Confidence 3568888888765 333 348999999999999775443333211110000 000 0 0112222222 22444
Q ss_pred EEecccccCCCCCeeEecHHHHHHHHhc--CccccCcccEEEEeccccCCCCCchHHHHHHHHh---cCCCceEEEeccC
Q 002359 148 LMTGDVTLSPNASCLVMTTEILRGMLYR--GSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF---LPPAIKMVFLSAT 222 (931)
Q Consensus 148 ~~tGd~~~~~~~~IlV~Tpe~L~~~l~~--~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~---l~~~~q~v~lSAT 222 (931)
.+..+.. ...+- .+.++.+... .........++|+||+|.|.. .....++.. -+++..+++.|-.
T Consensus 78 ~~~~~~~---~~~i~---~~~ir~l~~~~~~~~~~~~~kviIide~d~l~~----~a~n~Llk~lEep~~~~~fIl~t~~ 147 (207)
T d1a5ta2 78 TLAPEKG---KNTLG---VDAVREVTEKLNEHARLGGAKVVWVTDAALLTD----AAANALLKTLEEPPAETWFFLATRE 147 (207)
T ss_dssp EECCCTT---CSSBC---HHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH----HHHHHHHHHHTSCCTTEEEEEEESC
T ss_pred hhhhhhc---ccccc---cchhhHHhhhhhhccccCccceEEechhhhhhh----hhhHHHHHHHHhhcccceeeeeecC
Confidence 4432211 11222 2333333322 112345678999999999973 333444433 3456666665543
No 51
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=96.26 E-value=0.0038 Score=66.91 Aligned_cols=73 Identities=22% Similarity=0.221 Sum_probs=56.9
Q ss_pred hccCCCCCCHHHHHHHHHH----hcC-CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC
Q 002359 70 AKTYSFELDPFQRVSVACL----ERN-ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK 144 (931)
Q Consensus 70 ~~~~~f~l~~~Q~~ai~~l----~~g-~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~ 144 (931)
...-+|.|.--|=+||..+ .+| +..++.|-||||||++..- ++.. .++.+||++|+..+|.|++++++.+++
T Consensus 5 ~~~~~~~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~-l~~~--~~rp~LVVt~n~~~A~qL~~dL~~~l~ 81 (413)
T d1t5la1 5 QLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISN-VIAQ--VNKPTLVIAHNKTLAGQLYSELKEFFP 81 (413)
T ss_dssp CCCCSSCCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHH-HHHH--HTCCEEEECSSHHHHHHHHHHHHHHCT
T ss_pred EEecCCCCCCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHHH-HHHH--hCCCEEEEeCCHHHHHHHHHHHHHHcC
Confidence 3445788888888888765 344 5689999999999976432 2222 367899999999999999999999998
Q ss_pred C
Q 002359 145 D 145 (931)
Q Consensus 145 ~ 145 (931)
+
T Consensus 82 ~ 82 (413)
T d1t5la1 82 H 82 (413)
T ss_dssp T
T ss_pred C
Confidence 4
No 52
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=95.76 E-value=0.0065 Score=69.41 Aligned_cols=82 Identities=15% Similarity=0.153 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhC----CCEEEEEcCchhhHHHHHHHHHHhcCCeEEEec
Q 002359 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTG 151 (931)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~----~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tG 151 (931)
.|++-|++++.. ...+++|.|..|||||.+..--+...+.+ ..++++++.|++.++++..++++.++.
T Consensus 11 ~L~~eQ~~~v~~--~~~~~lV~A~AGSGKT~~lv~ri~~ll~~~~~~p~~Il~ltft~~Aa~ei~~Ri~~~l~~------ 82 (623)
T g1qhh.1 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGG------ 82 (623)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGG------
T ss_pred hcCHHHHHHHcC--CCCCEEEEEeCchHHHHHHHHHHHHHHHcCCCCcccEEEEeccHHHHHHHHHHHHHhccc------
Confidence 489999999973 35679999999999999987766666543 257999999999999999999887642
Q ss_pred ccccCCCCCeeEecHHHHH
Q 002359 152 DVTLSPNASCLVMTTEILR 170 (931)
Q Consensus 152 d~~~~~~~~IlV~Tpe~L~ 170 (931)
...++-|.|-..|.
T Consensus 83 -----~~~~~~v~TfHs~~ 96 (623)
T g1qhh.1 83 -----AAEDVWISTFHSMC 96 (623)
T ss_dssp -----GGTTSEEEEHHHHH
T ss_pred -----ccCCCEEEcHHHHH
Confidence 11246788987775
No 53
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=95.52 E-value=0.014 Score=55.90 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=68.0
Q ss_pred HHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC--CeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcC
Q 002359 110 YAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK--DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRG 176 (931)
Q Consensus 110 l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~--~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~ 176 (931)
-+|...+.+|.+|.|++|..+=+...+..+++.|+ ++++++|..+. +...+|+|+|+ .+..+
T Consensus 22 ~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~Tt-----vIEvG 96 (211)
T d2eyqa5 22 EAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIETG 96 (211)
T ss_dssp HHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTGGG
T ss_pred HHHHHHHHcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEeh-----hhhhc
Confidence 46777889999999999999999999999999999 79999998863 45799999998 34444
Q ss_pred ccccCcccEEEEeccccCC
Q 002359 177 SEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 177 ~~~l~~l~~vViDEaH~l~ 195 (931)
..+.+..++|+..||++.
T Consensus 97 -iDvpnA~~iiI~~a~rfG 114 (211)
T d2eyqa5 97 -IDIPTANTIIIERADHFG 114 (211)
T ss_dssp -SCCTTEEEEEETTTTSSC
T ss_pred -cCCCCCcEEEEecchhcc
Confidence 347899999999999875
No 54
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Probab=95.21 E-value=0.059 Score=52.05 Aligned_cols=99 Identities=16% Similarity=0.249 Sum_probs=58.0
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHHHH
Q 002359 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGM 172 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~~ 172 (931)
.+++.||+|+|||-...-........+.+++|+ +...+.++....+... ....+..
T Consensus 38 ~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------------------~~~~~~~- 93 (213)
T d1l8qa2 38 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYS-SADDFAQAMVEHLKKG----------------------TINEFRN- 93 (213)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEE-EHHHHHHHHHHHHHHT----------------------CHHHHHH-
T ss_pred cEEEECCCCCcHHHHHHHHHHHhccCccceEEe-chHHHHHHHHHHHHcc----------------------chhhHHH-
Confidence 389999999999976543333444566666665 4445555554444321 1122221
Q ss_pred HhcCccccCcccEEEEeccccCCCCCchHHHHH----HHHh-cCCCceEEEeccCCC
Q 002359 173 LYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEE----SIIF-LPPAIKMVFLSATMS 224 (931)
Q Consensus 173 l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~----ii~~-l~~~~q~v~lSAT~~ 224 (931)
.+...+++++|++|.+... ..|++ ++.. .....++|+.|-..|
T Consensus 94 ------~~~~~dll~iDDi~~i~~~---~~~~~~lf~lin~~~~~~~~iiits~~~p 141 (213)
T d1l8qa2 94 ------MYKSVDLLLLDDVQFLSGK---ERTQIEFFHIFNTLYLLEKQIILASDRHP 141 (213)
T ss_dssp ------HHHTCSEEEEECGGGGTTC---HHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred ------HHhhccchhhhhhhhhcCc---hHHHHHHHHHHHHHhhccceEEEecCCcc
Confidence 2447899999999999753 23333 2222 235566666665544
No 55
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}
Probab=94.74 E-value=0.066 Score=51.02 Aligned_cols=108 Identities=14% Similarity=0.094 Sum_probs=59.4
Q ss_pred HHHHHHHH-h--cCCcEEEEcCCCCCcHHHHHHHHHHHHhC----CCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccc
Q 002359 81 QRVSVACL-E--RNESVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDV 153 (931)
Q Consensus 81 Q~~ai~~l-~--~g~~vlv~apTGsGKTl~~~l~i~~~l~~----~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~ 153 (931)
|.+.+..+ . .+.++++.+|.|+|||..+.... ..+.. ..-++++.|..
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~-~~i~~~~~~h~D~~~i~~~~------------------------ 56 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELP-EYVEKFPPKASDVLEIDPEG------------------------ 56 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHH-HHHHTSCCCTTTEEEECCSS------------------------
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHH-HHHhccccCCCCEEEEeCCc------------------------
Confidence 56666655 2 34689999999999998764222 22111 11233333321
Q ss_pred ccCCCCCeeEecHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhc---CCCceEEEeccCC
Q 002359 154 TLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLSATM 223 (931)
Q Consensus 154 ~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l---~~~~q~v~lSAT~ 223 (931)
..|-|-..-.+.+.+...+ ......++|+||||+|. ......++..+ |++..+++.|..+
T Consensus 57 -----~~I~Id~IR~i~~~~~~~~-~~~~~KviIId~ad~l~----~~aqNaLLK~LEEPp~~t~fiLit~~~ 119 (198)
T d2gnoa2 57 -----ENIGIDDIRTIKDFLNYSP-ELYTRKYVIVHDCERMT----QQAANAFLKALEEPPEYAVIVLNTRRW 119 (198)
T ss_dssp -----SCBCHHHHHHHHHHHTSCC-SSSSSEEEEETTGGGBC----HHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred -----CCCCHHHHHHHHHHHhhCc-ccCCCEEEEEeCccccc----hhhhhHHHHHHhCCCCCceeeeccCCh
Confidence 1111111112223333322 34677899999999997 34444444444 5677777776554
No 56
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=94.64 E-value=0.1 Score=51.85 Aligned_cols=94 Identities=12% Similarity=0.023 Sum_probs=67.8
Q ss_pred cCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHH
Q 002359 327 RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVI 406 (931)
Q Consensus 327 ~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~ 406 (931)
..+.++++-+++..-+.+....+.+.-. .+...++.+||+++..+
T Consensus 130 ~~g~q~~~m~Pt~~La~Qh~~~~~~~f~-----------------------------------~~~~~v~~l~~~~~~~~ 174 (264)
T d1gm5a3 130 EAGFQTAFMVPTSILAIQHYRRTVESFS-----------------------------------KFNIHVALLIGATTPSE 174 (264)
T ss_dssp HHTSCEEEECSCHHHHHHHHHHHHHHHT-----------------------------------CSSCCEEECCSSSCHHH
T ss_pred hcccceeEEeehHhhhHHHHHHHHHhhh-----------------------------------hccccceeeccccchHH
Confidence 3567899999999888887777654110 01123789999999999
Q ss_pred HHHHHHHHhcCCceEEEecchhh-cccCCCCcEEEEecceecCCCCCcccCHHHHHHhhh
Q 002359 407 KELVELLFQEGLVKALFATETFA-MGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSG 465 (931)
Q Consensus 407 R~~v~~~F~~g~i~vLvaT~~la-~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~G 465 (931)
|..+.....+|+++|+|+|-.+- ..+.+.+..+||....+--| |.||.+
T Consensus 175 r~~~~~~~~~g~~~iiIGThsl~~~~~~f~~LglviiDEqH~fg----------v~Qr~~ 224 (264)
T d1gm5a3 175 KEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFG----------VKQREA 224 (264)
T ss_dssp HHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC---------------CC
T ss_pred HHHHHHHHHCCCCCEEEeehHHhcCCCCccccceeeeccccccc----------hhhHHH
Confidence 99999999999999999998765 46888888887765544333 677754
No 57
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=94.46 E-value=0.09 Score=50.30 Aligned_cols=119 Identities=16% Similarity=0.099 Sum_probs=67.1
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcC--chhhHHHHHHHHHHhcC-CeEEEecccccCCCCCeeEecHHHHH
Q 002359 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP--LKALSNQKYRELHQEFK-DVGLMTGDVTLSPNASCLVMTTEILR 170 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P--~kaL~~Q~~~~l~~~~~-~vg~~tGd~~~~~~~~IlV~Tpe~L~ 170 (931)
+++++|||+|||....=-......++.++.+++- .|.-+.++.+.+.+..+ ++- .+.+++.+.
T Consensus 13 i~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~--------------~~~~~~~~~ 78 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVL--------------EVMDGESPE 78 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEE--------------ECCTTCCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCccc--------------cccccchhh
Confidence 4669999999997644323333456777766654 66777777777776653 211 112222222
Q ss_pred HHHhcC--ccccCcccEEEEeccccCCCCC-chHHHHHHHHhcCCCceEEEeccCCCCh
Q 002359 171 GMLYRG--SEVLKEVAWVIFDEIHYMKDRE-RGVVWEESIIFLPPAIKMVFLSATMSNA 226 (931)
Q Consensus 171 ~~l~~~--~~~l~~l~~vViDEaH~l~~~~-~g~~~~~ii~~l~~~~q~v~lSAT~~n~ 226 (931)
...... ...+++.++|++|=+=+..... .-..+..+....++..-++.++||.+..
T Consensus 79 ~~~~~~~~~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~ 137 (207)
T d1ls1a2 79 SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE 137 (207)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHH
T ss_pred HHHHHHHHHHhhccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchh
Confidence 111100 0124577899999988765321 1222333444456667788888887643
No 58
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=94.21 E-value=0.027 Score=58.06 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCCCcHHHH
Q 002359 90 RNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~ 108 (931)
...++++.+|||+|||..+
T Consensus 48 ~~~~iLl~GPpG~GKT~lA 66 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIA 66 (309)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4588999999999999976
No 59
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=94.08 E-value=0.22 Score=48.31 Aligned_cols=94 Identities=12% Similarity=0.020 Sum_probs=73.4
Q ss_pred cCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHH
Q 002359 327 RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVI 406 (931)
Q Consensus 327 ~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~ 406 (931)
..+.++++-+++..-+......+.+..-. +...|..+||+++..+
T Consensus 102 ~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~-----------------------------------~~~~v~~l~~~~~~~~ 146 (233)
T d2eyqa3 102 DNHKQVAVLVPTTLLAQQHYDNFRDRFAN-----------------------------------WPVRIEMISRFRSAKE 146 (233)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTT-----------------------------------TTCCEEEESTTSCHHH
T ss_pred HcCCceEEEccHHHhHHHHHHHHHHHHhh-----------------------------------CCCEEEeccCcccchh
Confidence 46678999999999999888888652100 1113788999999999
Q ss_pred HHHHHHHHhcCCceEEEecchhh-cccCCCCcEEEEecceecCCCCCcccCHHHHHHhhh
Q 002359 407 KELVELLFQEGLVKALFATETFA-MGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSG 465 (931)
Q Consensus 407 R~~v~~~F~~g~i~vLvaT~~la-~GIdip~~~vVI~~~~~~d~~~~~~~s~~~y~Qr~G 465 (931)
|..+...+.+|.++|||.|-.+- ..+.+++..+||....+--+ |.|+.+
T Consensus 147 ~~~~~~~~~~g~~~iviGths~l~~~~~f~~LgLiIiDEeH~fg----------~kQ~~~ 196 (233)
T d2eyqa3 147 QTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFG----------VRHKER 196 (233)
T ss_dssp HHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGSC----------HHHHHH
T ss_pred HHHHHHHHhCCCCCEEEeehhhhccCCccccccceeeechhhhh----------hHHHHH
Confidence 99999999999999999998655 47889999988866554334 777765
No 60
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}
Probab=93.41 E-value=0.17 Score=44.95 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=54.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHHHHH
Q 002359 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGML 173 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l 173 (931)
-++.+|..||||.-.+-.+.+....+.+++++-|...=- ....+-...|. . -..+.+.+...+.+.+
T Consensus 5 ~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~~D~R---------~~~~i~s~~g~---~-~~~~~~~~~~~~~~~~ 71 (139)
T d2b8ta1 5 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR---------SIRNIQSRTGT---S-LPSVEVESAPEILNYI 71 (139)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG---------GCSSCCCCCCC---S-SCCEEESSTHHHHHHH
T ss_pred EEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEccccc---------ccceEEcccCc---e-eeeEEeccchhhHHHH
Confidence 478899999999876656666667789999999985510 11121111111 1 1234455544444444
Q ss_pred hcCccccCcccEEEEeccccCCC
Q 002359 174 YRGSEVLKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 174 ~~~~~~l~~l~~vViDEaH~l~~ 196 (931)
... ....++++|.+||++.+.+
T Consensus 72 ~~~-~~~~~~dvI~IDE~QFf~d 93 (139)
T d2b8ta1 72 MSN-SFNDETKVIGIDEVQFFDD 93 (139)
T ss_dssp HST-TSCTTCCEEEECSGGGSCT
T ss_pred Hhh-ccccCcCEEEechhhhcch
Confidence 432 2346889999999998853
No 61
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=93.21 E-value=0.35 Score=46.03 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=57.3
Q ss_pred EEEEcCCCCCcHHHHH-HHHHHHHhCCCEEE-EEcC-chhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHH
Q 002359 94 VLVSAHTSAGKTAVAE-YAIAMAFRDKQRVI-YTSP-LKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILR 170 (931)
Q Consensus 94 vlv~apTGsGKTl~~~-l~i~~~l~~~~rvl-~l~P-~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~ 170 (931)
+++++|||+|||.... +| .....++.++. +.+- .|.=+.++.+.+.+..+ +.+.. +.+++.+.
T Consensus 15 i~lvGptGvGKTTTiAKLA-~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~-v~~~~------------~~~~~~~~ 80 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLA-YFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIG-VPVYG------------EPGEKDVV 80 (211)
T ss_dssp EEEECSCCC----HHHHHH-HHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHT-CCEEC------------CTTCCCHH
T ss_pred EEEECCCCCCHHHHHHHHH-HHHHHCCCceEEEEeeccccchhHHHHHhccccC-cceee------------cccchhhh
Confidence 5678999999997643 44 33334555554 4443 35555555566655543 11111 11222222
Q ss_pred HHHhcC--ccccCcccEEEEeccccCCCCCchHHHH---HHHHhcCCCceEEEeccCCC
Q 002359 171 GMLYRG--SEVLKEVAWVIFDEIHYMKDRERGVVWE---ESIIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 171 ~~l~~~--~~~l~~l~~vViDEaH~l~~~~~g~~~~---~ii~~l~~~~q~v~lSAT~~ 224 (931)
..+.+. .....+.++|++|=+=+.........++ .+.....+.-.++.++||..
T Consensus 81 ~~~~~a~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~ 139 (211)
T d1j8yf2 81 GIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG 139 (211)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred HHHHHHHHHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccC
Confidence 222111 0124578999999886543222222233 33444555666788888875
No 62
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=93.19 E-value=0.044 Score=53.28 Aligned_cols=43 Identities=14% Similarity=0.214 Sum_probs=26.1
Q ss_pred CcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCC
Q 002359 181 KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 181 ~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~ 224 (931)
....++|+||+|.+.+... ..+...+...+....+++.+....
T Consensus 100 ~~~kviiiDe~d~~~~~~~-~~ll~~~e~~~~~~~~i~~~~~~~ 142 (224)
T d1sxjb2 100 GKHKIVILDEADSMTAGAQ-QALRRTMELYSNSTRFAFACNQSN 142 (224)
T ss_dssp TCCEEEEEESGGGSCHHHH-HTTHHHHHHTTTTEEEEEEESCGG
T ss_pred cceEEEEEecccccchhHH-HHHhhhccccccceeeeeccCchh
Confidence 3567999999999985321 112233444455666777665543
No 63
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=93.06 E-value=0.12 Score=50.70 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=17.5
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHH
Q 002359 93 SVLVSAHTSAGKTAVAEYAIAMAF 116 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l 116 (931)
.+++.||+|+|||..+.. ++..+
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~-~~~~l 58 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARL-LAKGL 58 (239)
T ss_dssp EEEEECSTTSSHHHHHHH-HHHHH
T ss_pred eEEEECCCCCcHHHHHHH-HHHHh
Confidence 489999999999998754 34343
No 64
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=92.93 E-value=0.059 Score=53.19 Aligned_cols=41 Identities=10% Similarity=0.233 Sum_probs=24.1
Q ss_pred CcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccC
Q 002359 181 KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSAT 222 (931)
Q Consensus 181 ~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT 222 (931)
....++|+||+|.+.... -..+..++...+.++.+++.+-.
T Consensus 130 ~~~~iiiide~d~l~~~~-~~~l~~~~e~~~~~~~~Il~tn~ 170 (252)
T d1sxje2 130 HRYKCVIINEANSLTKDA-QAALRRTMEKYSKNIRLIMVCDS 170 (252)
T ss_dssp -CCEEEEEECTTSSCHHH-HHHHHHHHHHSTTTEEEEEEESC
T ss_pred CCceEEEecccccccccc-chhhhcccccccccccceeeecc
Confidence 456799999999986331 12233344445566666665433
No 65
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}
Probab=92.84 E-value=0.24 Score=47.24 Aligned_cols=117 Identities=13% Similarity=0.178 Sum_probs=61.6
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE-cCc-hhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHHH
Q 002359 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT-SPL-KALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRG 171 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l-~P~-kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~ 171 (931)
+++++|||+|||....=-.....+.+.+|.++ +-| |.=+.++.+.+.+..+ +.+.. +-+++.+..
T Consensus 12 i~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~-v~~~~------------~~~~~d~~~ 78 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNN-IPVIA------------QHTGADSAS 78 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTT-CCEEC------------CSTTCCHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcC-Ccccc------------cccCCCHHH
Confidence 56799999999986442223333555555444 444 5656666666666653 11111 122222333
Q ss_pred HHhcCc--cccCcccEEEEeccccCCCCCchHHHHH---HHHhc------CCCceEEEeccCCCC
Q 002359 172 MLYRGS--EVLKEVAWVIFDEIHYMKDRERGVVWEE---SIIFL------PPAIKMVFLSATMSN 225 (931)
Q Consensus 172 ~l~~~~--~~l~~l~~vViDEaH~l~~~~~g~~~~~---ii~~l------~~~~q~v~lSAT~~n 225 (931)
.+++.. ...++.++|++|=+=+.... ...+++ +.... .+.-.++.++||...
T Consensus 79 ~l~~~~~~a~~~~~d~ilIDTaGr~~~d--~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~ 141 (211)
T d2qy9a2 79 VIFDAIQAAKARNIDVLIADTAGRLQNK--SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ 141 (211)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCCGGGH--HHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTH
T ss_pred HHHHHHHHHHHcCCCEEEeccCCCcccc--HHHHHHHHHHHHHHhhhcccCcceeeeehhcccCc
Confidence 322211 12457899999988654321 222222 22222 134567888898753
No 66
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=92.54 E-value=0.15 Score=50.21 Aligned_cols=42 Identities=19% Similarity=0.311 Sum_probs=25.6
Q ss_pred cccEEEEeccccCCCCCchHHHHHHHHhc-CCCceEEEeccCCC
Q 002359 182 EVAWVIFDEIHYMKDRERGVVWEESIIFL-PPAIKMVFLSATMS 224 (931)
Q Consensus 182 ~l~~vViDEaH~l~~~~~g~~~~~ii~~l-~~~~q~v~lSAT~~ 224 (931)
...++++||+|.+....++.. ..++... ....++++.++|..
T Consensus 123 ~~~vi~ide~~~~~~~~~~~~-~~~~~~~~~~~~~ii~i~~~~~ 165 (253)
T d1sxja2 123 KHFVIIMDEVDGMSGGDRGGV-GQLAQFCRKTSTPLILICNERN 165 (253)
T ss_dssp TSEEEEECSGGGCCTTSTTHH-HHHHHHHHHCSSCEEEEESCTT
T ss_pred cceEEEeeeccccccchhhhh-HHHhhhhccccccccccccccc
Confidence 566899999999987655433 3333322 33455666666543
No 67
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=92.07 E-value=0.21 Score=49.04 Aligned_cols=17 Identities=47% Similarity=0.569 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCCcHHHH
Q 002359 92 ESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~ 108 (931)
+++|+.||+|+|||..+
T Consensus 41 ~~vLL~GppGtGKT~la 57 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALA 57 (246)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 46999999999999876
No 68
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Probab=91.80 E-value=0.14 Score=47.25 Aligned_cols=54 Identities=13% Similarity=0.022 Sum_probs=30.7
Q ss_pred cCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCCChHHHHHHHH
Q 002359 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWIC 234 (931)
Q Consensus 180 l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n~~e~~~~l~ 234 (931)
..+.+++++||++...... ...++.+...+......++++........+.+-+.
T Consensus 97 ~~~~~vlllDE~~~~~~~~-~~~~~~l~~~l~~~~~~il~~~h~~~~~~~~~~i~ 150 (178)
T d1ye8a1 97 KDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIR 150 (178)
T ss_dssp HCTTCEEEECCCSTTGGGC-HHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHH
T ss_pred hcCCCceeecCCCccchhh-HHHHHHHHHHhccCCCEEEEEEccHHHHHhhceEE
Confidence 4578999999998665432 33344455555554455555554444344444443
No 69
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=91.80 E-value=0.09 Score=51.22 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCCcHHHH
Q 002359 92 ESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~ 108 (931)
.++++.||+|+|||..+
T Consensus 34 ~~lll~Gp~G~GKTtl~ 50 (237)
T d1sxjd2 34 PHMLFYGPPGTGKTSTI 50 (237)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCChHHHH
Confidence 46899999999999875
No 70
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=91.52 E-value=0.24 Score=47.72 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=23.5
Q ss_pred cCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEec
Q 002359 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLS 220 (931)
Q Consensus 180 l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lS 220 (931)
.....++|+||+|.+.... ...+..++...++...+++.+
T Consensus 97 ~~~~kiiiiDe~d~~~~~~-~~~Ll~~le~~~~~~~~~~~~ 136 (227)
T d1sxjc2 97 SKGFKLIILDEADAMTNAA-QNALRRVIERYTKNTRFCVLA 136 (227)
T ss_dssp SCSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEEeccccchhhH-HHHHHHHhhhcccceeecccc
Confidence 4456799999999987432 222333444445555555544
No 71
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=91.40 E-value=0.73 Score=43.01 Aligned_cols=109 Identities=15% Similarity=0.177 Sum_probs=64.1
Q ss_pred HHHHHh--cCCcEEEEcCCCCCcHHHHHHHHHHHHh-------CCCEEEEEcCchhhHH-----HHHHHHHHh-------
Q 002359 84 SVACLE--RNESVLVSAHTSAGKTAVAEYAIAMAFR-------DKQRVIYTSPLKALSN-----QKYRELHQE------- 142 (931)
Q Consensus 84 ai~~l~--~g~~vlv~apTGsGKTl~~~l~i~~~l~-------~~~rvl~l~P~kaL~~-----Q~~~~l~~~------- 142 (931)
.+..+. ...|+++.+|+|.|||.+..-.+..... .+.+++-+.+..-++. |+.++++..
T Consensus 34 l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~ 113 (195)
T d1jbka_ 34 TIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQ 113 (195)
T ss_dssp HHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcC
Confidence 344453 4468999999999999887544333332 2456555555543332 333333322
Q ss_pred cCCeEEEeccc-------------cc---------CCCCCee-EecHHHHHHHHhcCccccCcccEEEEeccc
Q 002359 143 FKDVGLMTGDV-------------TL---------SPNASCL-VMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192 (931)
Q Consensus 143 ~~~vg~~tGd~-------------~~---------~~~~~Il-V~Tpe~L~~~l~~~~~~l~~l~~vViDEaH 192 (931)
-+++-++..+. +. .++..|+ -+||+.++.++.+.....+.+..|-++|-.
T Consensus 114 ~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT~eey~~~~e~d~aL~rrF~~I~V~Ep~ 186 (195)
T d1jbka_ 114 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPS 186 (195)
T ss_dssp TTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCC
T ss_pred CCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCCHHHHHHHHHcCHHHHhcCCEeecCCCC
Confidence 22333322111 10 1234444 478899998888888788889999998853
No 72
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}
Probab=91.38 E-value=0.045 Score=56.49 Aligned_cols=90 Identities=16% Similarity=0.170 Sum_probs=56.5
Q ss_pred HHHHHH-HHhcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCC
Q 002359 81 QRVSVA-CLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNA 159 (931)
Q Consensus 81 Q~~ai~-~l~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~ 159 (931)
+...+. ++..+.+++|+|+||||||... .+++..+....|++.+--+.+|.-. ...++..+.++ .
T Consensus 155 ~~~~l~~~v~~~~nili~G~tgSGKTT~l-~al~~~i~~~~rivtiEd~~El~l~-------~~~~~~~~~~~------~ 220 (323)
T d1g6oa_ 155 AISAIKDGIAIGKNVIVCGGTGSGKTTYI-KSIMEFIPKEERIISIEDTEEIVFK-------HHKNYTQLFFG------G 220 (323)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSSHHHHH-HHHGGGSCTTCCEEEEESSCCCCCS-------SCSSEEEEECB------T
T ss_pred HHHHHHHHHHhCCCEEEEeeccccchHHH-HHHhhhcccccceeeccchhhhhcc-------cccccceeccc------c
Confidence 344443 4477899999999999999863 5666666778899999888887311 01122222221 1
Q ss_pred CeeEecHHHHHHHHhcCccccCcccEEEEeccc
Q 002359 160 SCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192 (931)
Q Consensus 160 ~IlV~Tpe~L~~~l~~~~~~l~~l~~vViDEaH 192 (931)
+ .|...+.....+ .+.++||+.|+=
T Consensus 221 ~---~~~~~ll~~~lR-----~~pd~iivgEiR 245 (323)
T d1g6oa_ 221 N---ITSADCLKSCLR-----MRPDRIILGELR 245 (323)
T ss_dssp T---BCHHHHHHHHTT-----SCCSEEEESCCC
T ss_pred c---hhHHHHHHHHhc-----cCCCcccCCccC
Confidence 2 155555433322 357899999984
No 73
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=91.36 E-value=0.28 Score=51.91 Aligned_cols=67 Identities=24% Similarity=0.225 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHH----HhcCCc-EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCC
Q 002359 76 ELDPFQRVSVAC----LERNES-VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKD 145 (931)
Q Consensus 76 ~l~~~Q~~ai~~----l~~g~~-vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~ 145 (931)
+|.--|-+||.. +.+|.. +.+.+.||||||++.. ++... .++.+||++|+...|.+.++++..++++
T Consensus 8 ~p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A-~l~~~--~~rp~LvVt~~~~~A~~l~~dL~~~l~~ 79 (408)
T d1c4oa1 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMA-KVIEA--LGRPALVLAPNKILAAQLAAEFRELFPE 79 (408)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHH--HTCCEEEEESSHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH-HHHHH--hCCCEEEEeCCHHHHHHHHHHHHHhcCc
Confidence 455556666654 466654 6899999999997632 22222 3667999999999999999999999874
No 74
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.35 E-value=0.34 Score=42.51 Aligned_cols=40 Identities=8% Similarity=-0.009 Sum_probs=30.8
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchh
Q 002359 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKA 130 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~ka 130 (931)
|.=-++.+|..||||.-.+-.+......+.+++++-|...
T Consensus 2 G~L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ikp~~D 41 (133)
T d1xbta1 2 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 41 (133)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred cEEEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEecccc
Confidence 3445789999999998665556666667889999998855
No 75
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}
Probab=91.27 E-value=0.1 Score=51.42 Aligned_cols=34 Identities=26% Similarity=0.237 Sum_probs=24.2
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCc
Q 002359 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL 128 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~ 128 (931)
+.+|+.||+|+|||..+-.. ... -+..++++.+.
T Consensus 43 ~giLl~GppGtGKT~la~ai-a~~--~~~~~~~i~~~ 76 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAV-AGE--ARVPFITASGS 76 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHH-HHH--TTCCEEEEEHH
T ss_pred ceEEEecCCCCChhHHHHHH-HHH--cCCCEEEEEhH
Confidence 46999999999999986433 332 25667777654
No 76
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}
Probab=91.17 E-value=0.4 Score=42.43 Aligned_cols=88 Identities=11% Similarity=0.141 Sum_probs=50.9
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHHH
Q 002359 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILR 170 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~ 170 (931)
|.=-++.+|..||||.-.+-.+.+....+.+++++-|... . .++.-.+.+-+ ... ...+.+.+...+.
T Consensus 7 G~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~~~~D---~-------Ry~~~~i~sh~-g~~-~~a~~~~~~~~~~ 74 (141)
T d1xx6a1 7 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEID---N-------RYSKEDVVSHM-GEK-EQAVAIKNSREIL 74 (141)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-----------------CEEECTT-SCE-EECEEESSSTHHH
T ss_pred eeEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEEeccc---c-------ccccceeeecc-cce-EEEEEecchhhhh
Confidence 3445789999999998766566666667899999999854 1 11111111111 001 1123333433333
Q ss_pred HHHhcCccccCcccEEEEeccccCCC
Q 002359 171 GMLYRGSEVLKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 171 ~~l~~~~~~l~~l~~vViDEaH~l~~ 196 (931)
..+ ..+.++|.+||+|.+.+
T Consensus 75 ~~~------~~~~dvI~IDE~QFf~d 94 (141)
T d1xx6a1 75 KYF------EEDTEVIAIDEVQFFDD 94 (141)
T ss_dssp HHC------CTTCSEEEECSGGGSCT
T ss_pred hhh------cccccEEEEeehhhccc
Confidence 322 35689999999998864
No 77
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}
Probab=90.05 E-value=0.14 Score=48.94 Aligned_cols=123 Identities=13% Similarity=0.132 Sum_probs=64.2
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc-C-chhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHH
Q 002359 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS-P-LKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~-P-~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (931)
++-+++++|||+|||....=-.......+.+|.+++ - .|+=+.++.+.+.+..+ +.++..... .+. ...
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~-i~~~~~~~~----~d~----~~~ 76 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLS-IPVIQGPEG----TDP----AAL 76 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHT-CCEECCCTT----CCH----HHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccC-ceEEeccCC----ccH----HHH
Confidence 455788999999999864422233345566654444 4 36777777777777653 111111100 000 112
Q ss_pred HHHHHhcCccccCcccEEEEeccccCCCCCchHHHHH---HHHh---c---CCCceEEEeccCCCCh
Q 002359 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEE---SIIF---L---PPAIKMVFLSATMSNA 226 (931)
Q Consensus 169 L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~---ii~~---l---~~~~q~v~lSAT~~n~ 226 (931)
+.+.+.. ...++.++|++|=+=+.... ....++ +... . .+.-.++.+|||....
T Consensus 77 ~~~~~~~--~~~~~~d~ilIDTaGr~~~d--~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~ 139 (207)
T d1okkd2 77 AYDAVQA--MKARGYDLLFVDTAGRLHTK--HNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN 139 (207)
T ss_dssp HHHHHHH--HHHHTCSEEEECCCCCCTTC--HHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH
T ss_pred HHHHHHH--HHHCCCCEEEcCccccchhh--HHHHHHHHHHHHHhhhcccCCCceEEEEeecccCch
Confidence 2222111 11346789999988766532 222222 2211 1 2344578889998643
No 78
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=89.73 E-value=0.45 Score=45.82 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCCcHHHHH
Q 002359 92 ESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (931)
.++++.||+|+|||..+-
T Consensus 46 ~~lll~Gp~G~GKTtla~ 63 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAAL 63 (231)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 579999999999998764
No 79
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}
Probab=88.68 E-value=0.18 Score=53.56 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHhcC--CcEEEEcCCCCCcHHHHHHHHHHHHh
Q 002359 77 LDPFQRVSVACLERN--ESVLVSAHTSAGKTAVAEYAIAMAFR 117 (931)
Q Consensus 77 l~~~Q~~ai~~l~~g--~~vlv~apTGsGKTl~~~l~i~~~l~ 117 (931)
+.+.|.+.+..+... .-++++||||||||... ++++..+.
T Consensus 142 ~~~~~~~~l~~l~~~~~GliLvtGpTGSGKSTTl-~~~l~~~~ 183 (401)
T d1p9ra_ 142 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQELN 183 (401)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHHC
T ss_pred ccHHHHHHHHHHHhhhhceEEEEcCCCCCccHHH-HHHhhhhc
Confidence 678888888877543 34789999999999874 44555553
No 80
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}
Probab=88.61 E-value=0.18 Score=49.19 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=33.5
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCc
Q 002359 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL 128 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~ 128 (931)
.|.-+++.|++|+|||..+.-.+.....++.+++|++-.
T Consensus 25 ~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e 63 (242)
T d1tf7a2 25 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE 63 (242)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeecc
Confidence 457899999999999999888888888889999998754
No 81
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=88.46 E-value=0.56 Score=43.04 Aligned_cols=75 Identities=16% Similarity=0.124 Sum_probs=60.0
Q ss_pred HHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCcccc
Q 002359 112 IAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVL 180 (931)
Q Consensus 112 i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l 180 (931)
+......+.++||.|+++.-+....+.|.+.+-.+..++|+.+. +...+|+|+|. ++.+| ..+
T Consensus 24 i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~-----v~~~G-iDi 97 (174)
T d1c4oa2 24 IRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLREG-LDI 97 (174)
T ss_dssp HHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCCTT-CCC
T ss_pred HHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeEEEEeee-----eeeee-ccC
Confidence 44455789999999999999999999999988899999999863 45789999996 34444 347
Q ss_pred CcccEEEEeccc
Q 002359 181 KEVAWVIFDEIH 192 (931)
Q Consensus 181 ~~l~~vViDEaH 192 (931)
.++++||+=.++
T Consensus 98 p~V~~Vi~~~~~ 109 (174)
T d1c4oa2 98 PEVSLVAILDAD 109 (174)
T ss_dssp TTEEEEEETTTT
T ss_pred CCCcEEEEeccc
Confidence 788888875544
No 82
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=88.35 E-value=0.41 Score=46.40 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCCcHHHH
Q 002359 92 ESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~ 108 (931)
.++++.||+|+|||..+
T Consensus 36 ~~~Ll~GPpG~GKTtla 52 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLA 52 (239)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 58999999999999876
No 83
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}
Probab=88.23 E-value=0.17 Score=46.51 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=22.2
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEE
Q 002359 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRV 122 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rv 122 (931)
++|++.+|+|+|||..+...+......+.++
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v 32 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence 6799999999999997654444444455443
No 84
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}
Probab=87.73 E-value=0.22 Score=49.52 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=13.7
Q ss_pred EEEEcCCCCCcHHHHHH
Q 002359 94 VLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l 110 (931)
+++.||+|+|||.++-.
T Consensus 49 l~l~GppGtGKT~l~~~ 65 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKF 65 (287)
T ss_dssp EECTTCCSSSHHHHHHH
T ss_pred EEeECCCCCCHHHHHHH
Confidence 45689999999998643
No 85
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}
Probab=87.12 E-value=0.24 Score=52.95 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=35.6
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhH
Q 002359 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALS 132 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~ 132 (931)
..++++|.|+||||||......+.+.+..+..++|+=|--++.
T Consensus 49 ~~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~kge~~ 91 (433)
T d1e9ra_ 49 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDML 91 (433)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHH
T ss_pred ccceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeCChhHH
Confidence 3468999999999999876666777788899999999987653
No 86
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}
Probab=87.09 E-value=0.25 Score=47.21 Aligned_cols=116 Identities=14% Similarity=0.202 Sum_probs=60.5
Q ss_pred cEEEEcCCCCCcHHHHH-HHHHHHHhCCCEE-EEEcC-chhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHH
Q 002359 93 SVLVSAHTSAGKTAVAE-YAIAMAFRDKQRV-IYTSP-LKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEIL 169 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~-l~i~~~l~~~~rv-l~l~P-~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L 169 (931)
-+++++|||+|||.... +| .....++.+| ++.+- .|.=+.++.+.+.+..+ +-+.... +++-+
T Consensus 13 vi~lvGptGvGKTTTiAKLA-a~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~-i~~~~~~------------~~~d~ 78 (213)
T d1vmaa2 13 VIMVVGVNGTGKTTSCGKLA-KMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVG-ATVISHS------------EGADP 78 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHT-CEEECCS------------TTCCH
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHHCCCceEEEeecccccchhHHHHHHhhhcC-ccccccC------------CCCcH
Confidence 46789999999998643 44 3334455554 55555 45556666666655543 2222211 11111
Q ss_pred HHHHhcC--ccccCcccEEEEeccccCCCCCchHHHHHHH---HhcC------CCceEEEeccCCC
Q 002359 170 RGMLYRG--SEVLKEVAWVIFDEIHYMKDRERGVVWEESI---IFLP------PAIKMVFLSATMS 224 (931)
Q Consensus 170 ~~~l~~~--~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii---~~l~------~~~q~v~lSAT~~ 224 (931)
...++.. ....++.++|++|=+=+.... ...++++. .... +...++.++||..
T Consensus 79 ~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d--~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~ 142 (213)
T d1vmaa2 79 AAVAFDAVAHALARNKDVVIIDTAGRLHTK--KNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG 142 (213)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECCCCSCH--HHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccccccch--HHHHHHHHHHHhhhhhccccccceeEEeeccccC
Confidence 1111110 112457899999988765432 22233322 2111 2446788999875
No 87
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=86.92 E-value=0.8 Score=44.72 Aligned_cols=92 Identities=11% Similarity=0.150 Sum_probs=46.6
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhC--CCEEEEEc-CchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHH
Q 002359 92 ESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTS-PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~--~~rvl~l~-P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (931)
.++++.||+|+|||.++- .++..+.. +.+++++. .......+.+..+....+......+ .+...
T Consensus 44 ~~lll~GppGtGKT~l~~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 110 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLR-KLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRG------------LSRDE 110 (276)
T ss_dssp CEEEEECCTTSSHHHHHH-HHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSC------------CCHHH
T ss_pred CceEEECCCCCCHHHHHH-HHHHHHhcccCCcEEEecchhhhhhhhhhhhhHHhhhhhhhhhc------------cchhH
Confidence 589999999999998863 35555533 33444442 2333444444444443321100000 11122
Q ss_pred HHHHHhcCccccCcccEEEEeccccCCC
Q 002359 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 169 L~~~l~~~~~~l~~l~~vViDEaH~l~~ 196 (931)
+...+............+++|+++.+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 138 (276)
T d1fnna2 111 FLALLVEHLRERDLYMFLVLDDAFNLAP 138 (276)
T ss_dssp HHHHHHHHHHHTTCCEEEEEETGGGSCH
T ss_pred HHHHHHHHHhhcccccccchhHHHHhhh
Confidence 2222221112233566788999998764
No 88
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=85.07 E-value=0.44 Score=44.68 Aligned_cols=72 Identities=13% Similarity=0.154 Sum_probs=58.2
Q ss_pred ccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhhcCCcc
Q 002359 853 PFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIM 924 (931)
Q Consensus 853 ~~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ell~qi~~aa~~iG~~~L~~k~~~a~~~i~RdiV 924 (931)
+.-.-+++.|.++.|..+|++..++..|||=+......=++..+...++.+|..+|.+--.+...-++.|++
T Consensus 73 ~KtAl~L~dwi~E~~~~~I~~~y~v~~Gdl~~~~~~a~wl~~~~~~~~~~~~~~~l~~L~~Rl~~Gv~~ell 144 (198)
T d2p6ra2 73 VKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNTSVSGLTERIKHGVKEELL 144 (198)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSTTHHHHHHHTCCGGGH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHccCCHHHH
Confidence 345568899999999999999999999999988888888999999999999987766544444445555543
No 89
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}
Probab=84.85 E-value=0.4 Score=47.66 Aligned_cols=41 Identities=12% Similarity=0.094 Sum_probs=31.4
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHH-HHhCCCEEEEEcCc
Q 002359 88 LERNESVLVSAHTSAGKTAVAEYAIAM-AFRDKQRVIYTSPL 128 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~-~l~~~~rvl~l~P~ 128 (931)
+..|+-+++.|+||+|||..+...+.. +...+.+|+|++.-
T Consensus 32 ~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E 73 (277)
T d1cr2a_ 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (277)
T ss_dssp BCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeec
Confidence 356788999999999999765554444 45678899999865
No 90
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=84.63 E-value=1.1 Score=44.22 Aligned_cols=111 Identities=13% Similarity=0.133 Sum_probs=64.0
Q ss_pred HHHHHHHh--cCCcEEEEcCCCCCcHHHHHHHHHHHHh-------CCCEEEEEcCchhhHH-----HHHHHHHHhc----
Q 002359 82 RVSVACLE--RNESVLVSAHTSAGKTAVAEYAIAMAFR-------DKQRVIYTSPLKALSN-----QKYRELHQEF---- 143 (931)
Q Consensus 82 ~~ai~~l~--~g~~vlv~apTGsGKTl~~~l~i~~~l~-------~~~rvl~l~P~kaL~~-----Q~~~~l~~~~---- 143 (931)
.+.+..+. ...|+++.||.|.|||.+..-.+..... .+.+++.+.+..-++. ++.+.++..+
T Consensus 28 ~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~ 107 (268)
T d1r6bx2 28 ERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE 107 (268)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhccCccchhHHHHHHHHHHHhh
Confidence 34455553 3468999999999999876544333332 3456777666654442 2222333222
Q ss_pred --CCeEEEeccc--------------c----c-----CCCCCee-EecHHHHHHHHhcCccccCcccEEEEeccc
Q 002359 144 --KDVGLMTGDV--------------T----L-----SPNASCL-VMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192 (931)
Q Consensus 144 --~~vg~~tGd~--------------~----~-----~~~~~Il-V~Tpe~L~~~l~~~~~~l~~l~~vViDEaH 192 (931)
+++-++..+. + + .++..|+ -+||+.+...+.+.....+.+..|-++|-+
T Consensus 108 ~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg~i~vIgatT~eey~~~~e~d~al~rrF~~I~V~Eps 182 (268)
T d1r6bx2 108 QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPS 182 (268)
T ss_dssp SSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCC
T ss_pred ccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhCCCCeEEEeCCHHHHHHHHhhcHHHHhhhcccccCCCC
Confidence 2333322111 0 0 1133444 578888887777777778889999999876
No 91
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=83.43 E-value=0.21 Score=53.51 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCCcHHHHH
Q 002359 91 NESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~ 109 (931)
..|+|+.+|||+|||+.+-
T Consensus 49 ksNILliGPTGvGKTlLAr 67 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIAR 67 (443)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred cccEEEECCCCCCHHHHHH
Confidence 4699999999999999763
No 92
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}
Probab=82.74 E-value=0.56 Score=47.58 Aligned_cols=16 Identities=31% Similarity=0.547 Sum_probs=13.3
Q ss_pred cEEEEcCCCCCcHHHH
Q 002359 93 SVLVSAHTSAGKTAVA 108 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~ 108 (931)
++++.+|+|+|||+.+
T Consensus 125 ~~l~~G~pG~GKT~la 140 (321)
T d1w44a_ 125 MVIVTGKGNSGKTPLV 140 (321)
T ss_dssp EEEEECSSSSCHHHHH
T ss_pred eEEEECCCCccHHHHH
Confidence 3556899999999986
No 93
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}
Probab=80.91 E-value=0.69 Score=45.58 Aligned_cols=53 Identities=23% Similarity=0.172 Sum_probs=41.8
Q ss_pred HHHHHhc------CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHH
Q 002359 84 SVACLER------NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKY 136 (931)
Q Consensus 84 ai~~l~~------g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~ 136 (931)
+++.++. |+-+.+.+|+|+|||..++..+..+.+++..++|+----++..+..
T Consensus 41 ~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~a 99 (263)
T d1u94a1 41 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA 99 (263)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHH
T ss_pred HHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHHH
Confidence 5666553 3678899999999999998888888889999999877666655443
No 94
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}
Probab=80.22 E-value=0.64 Score=44.46 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=29.2
Q ss_pred cCCcEEEEcCCCCCcHHHHH-HHHHHHHhCCCEEEEEcCc
Q 002359 90 RNESVLVSAHTSAGKTAVAE-YAIAMAFRDKQRVIYTSPL 128 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~-l~i~~~l~~~~rvl~l~P~ 128 (931)
.|.-+++.|++|+|||..+. ++...+...+..++|++.-
T Consensus 25 ~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e 64 (242)
T d1tf7a1 25 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 64 (242)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCccccccc
Confidence 56789999999999998764 4444455566788888754
No 95
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}
Probab=79.69 E-value=0.49 Score=42.16 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCCcHHHHHH
Q 002359 91 NESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l 110 (931)
.+++++.||+|+|||.++-.
T Consensus 2 ~k~I~l~G~~GsGKSTvak~ 21 (169)
T d1kaga_ 2 KRNIFLVGPMGAGKSTIGRQ 21 (169)
T ss_dssp CCCEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46899999999999998643
No 96
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=78.74 E-value=0.79 Score=44.35 Aligned_cols=52 Identities=21% Similarity=0.210 Sum_probs=32.6
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHh------CCCEEEEEcCchhhHHHHHHHHHH
Q 002359 90 RNESVLVSAHTSAGKTAVAEYAIAMAFR------DKQRVIYTSPLKALSNQKYRELHQ 141 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~------~~~rvl~l~P~kaL~~Q~~~~l~~ 141 (931)
.|+-++|.+|+|+|||..++-.+..... .+..++|+.-..+-..+..+....
T Consensus 35 ~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (254)
T d1pzna2 35 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ 92 (254)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhHHHHHHHHHH
Confidence 3467899999999999987655555442 245666665444443444444433
No 97
>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}
Probab=78.48 E-value=2.7 Score=37.44 Aligned_cols=124 Identities=16% Similarity=0.046 Sum_probs=67.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecH--HHHH-
Q 002359 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT--EILR- 170 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp--e~L~- 170 (931)
+.|--..|=|||.+|+=-+++++..|.+|+++.=.|--...=...+.+.. .+.....+.. ....+. +.-.
T Consensus 5 i~vytG~GKGKTTAAlG~alRA~G~G~rV~ivQFlKg~~~~ge~~~~~~~-~~~~~~~~~~------~~~~~~~~e~~~~ 77 (157)
T d1g5ta_ 5 IIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH-GVEFQVMATG------FTWETQNREADTA 77 (157)
T ss_dssp EEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG-TCEEEECCTT------CCCCGGGHHHHHH
T ss_pred EEEEeCCCCCcHHHHHHHHHHHhcCCCEEEEEEEecCCcccchhhhhccc-CcEEEEecCC------CcccCCChHHHHH
Confidence 55666679999999988889999999999999766532111111222222 2222222111 111111 1111
Q ss_pred ---HHHhc--CccccCcccEEEEeccccCCCCCch--HHHHHHHHhcCCCceEEEeccCCC
Q 002359 171 ---GMLYR--GSEVLKEVAWVIFDEIHYMKDRERG--VVWEESIIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 171 ---~~l~~--~~~~l~~l~~vViDEaH~l~~~~~g--~~~~~ii~~l~~~~q~v~lSAT~~ 224 (931)
..+.. ....-..+++||+||+-+..+.+.- ..+..++...|.+.-+|+..-.+|
T Consensus 78 ~a~~~~~~a~~~~~~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~p 138 (157)
T d1g5ta_ 78 ACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 138 (157)
T ss_dssp HHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHhhcCccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 11111 1122346899999999877654332 223334455677777777666665
No 98
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}
Probab=78.37 E-value=0.49 Score=42.89 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCCcHHHHHH
Q 002359 91 NESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l 110 (931)
+.++++.||+|||||.++-.
T Consensus 5 ~~~I~i~G~~GsGKTT~~~~ 24 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMAEM 24 (174)
T ss_dssp SCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHH
Confidence 46799999999999998643
No 99
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}
Probab=78.08 E-value=0.94 Score=40.60 Aligned_cols=36 Identities=17% Similarity=0.080 Sum_probs=25.0
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCc
Q 002359 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL 128 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~ 128 (931)
-+.++++.|||||....--+.....+|.++.++...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d 39 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 39 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEeccc
Confidence 367899999999987654444444567777666543
No 100
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=77.75 E-value=2.1 Score=39.38 Aligned_cols=77 Identities=17% Similarity=0.156 Sum_probs=62.2
Q ss_pred HHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCcccc
Q 002359 112 IAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVL 180 (931)
Q Consensus 112 i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l 180 (931)
+.....++.+++|.++++.-+...+..+....-.+..++|+.+. +...+|+|+|. .+.+| ..+
T Consensus 24 i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTd-----v~~rG-iDi 97 (181)
T d1t5la2 24 IRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLREG-LDI 97 (181)
T ss_dssp HHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESC-----CCSSS-CCC
T ss_pred HHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCCEEEehh-----HHHcc-CCC
Confidence 44555678899999999999999999999887799999999874 34789999995 34444 457
Q ss_pred CcccEEEEeccccC
Q 002359 181 KEVAWVIFDEIHYM 194 (931)
Q Consensus 181 ~~l~~vViDEaH~l 194 (931)
.++++||.-.+...
T Consensus 98 p~v~~VI~~d~p~~ 111 (181)
T d1t5la2 98 PEVSLVAILDADKE 111 (181)
T ss_dssp TTEEEEEETTTTSC
T ss_pred CCCCEEEEecCCcc
Confidence 89999998877753
No 101
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=77.39 E-value=0.38 Score=43.76 Aligned_cols=19 Identities=32% Similarity=0.594 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCCCcHHHH
Q 002359 90 RNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~ 108 (931)
.|+-+++.||+|||||.++
T Consensus 3 ~g~iI~l~G~~GsGKSTia 21 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIA 21 (176)
T ss_dssp TTEEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4667889999999999975
No 102
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Probab=76.78 E-value=0.62 Score=48.39 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCCcHHHH
Q 002359 91 NESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~ 108 (931)
-.|+|..+|||.|||.++
T Consensus 68 ~~niLfiGPTGvGKTElA 85 (364)
T d1um8a_ 68 KSNILLIGPTGSGKTLMA 85 (364)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CcceeeeCCCCccHHHHH
Confidence 367999999999999875
No 103
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}
Probab=76.11 E-value=0.76 Score=41.39 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=16.6
Q ss_pred CcEEEEcCCCCCcHHHHHHH
Q 002359 92 ESVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~ 111 (931)
.++++.||+|||||.++...
T Consensus 5 ~~I~i~G~pGsGKTTia~~L 24 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKEL 24 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 47899999999999976433
No 104
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=76.08 E-value=1 Score=40.98 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=22.7
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE
Q 002359 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l 125 (931)
++-+++.|++|||||.+.-......-..+..+.++
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 35 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMV 35 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 35688999999999987644333322345555554
No 105
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}
Probab=75.92 E-value=0.52 Score=42.53 Aligned_cols=17 Identities=12% Similarity=0.360 Sum_probs=14.6
Q ss_pred cEEEEcCCCCCcHHHHH
Q 002359 93 SVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~ 109 (931)
-+++.||+|||||.++-
T Consensus 4 lI~i~G~~GsGKTTva~ 20 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCK 20 (176)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999863
No 106
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=75.66 E-value=1.5 Score=43.20 Aligned_cols=49 Identities=24% Similarity=0.213 Sum_probs=41.3
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHH
Q 002359 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYREL 139 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l 139 (931)
|+-+.+.+|.|+|||..++..+..+...+..++|+-.-..+..+..+.+
T Consensus 60 g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~a~~~ 108 (269)
T d1mo6a1 60 GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKL 108 (269)
T ss_dssp SSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHHHHHH
T ss_pred ceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHHHHHh
Confidence 5678899999999999998888888899999999988887876654444
No 107
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=75.39 E-value=0.55 Score=41.58 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.2
Q ss_pred cEEEEcCCCCCcHHHHH
Q 002359 93 SVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~ 109 (931)
-+++.|++|||||..+-
T Consensus 4 lIii~G~pGsGKTTla~ 20 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAR 20 (152)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47789999999998753
No 108
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=75.01 E-value=0.83 Score=43.98 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCCcHHHHH
Q 002359 92 ESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (931)
.++|+.||+|+|||.++-
T Consensus 36 ~~~L~~GPpGtGKT~lA~ 53 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLAH 53 (238)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 579999999999999763
No 109
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=74.71 E-value=0.67 Score=44.57 Aligned_cols=41 Identities=7% Similarity=0.076 Sum_probs=27.6
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHh------CCCEEEEEcCchh
Q 002359 90 RNESVLVSAHTSAGKTAVAEYAIAMAFR------DKQRVIYTSPLKA 130 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~------~~~rvl~l~P~ka 130 (931)
.|+.+++.+|+|+|||..+.-.+..+.. .+..++|+.-..+
T Consensus 33 ~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~ 79 (251)
T d1szpa2 33 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 79 (251)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecch
Confidence 4578999999999999876554443321 3456777654433
No 110
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}
Probab=74.45 E-value=1 Score=44.07 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=20.8
Q ss_pred cEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcC
Q 002359 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P 127 (931)
.+++.||+|+|||..+ -+++..+ +...+.+.+
T Consensus 34 ~ilL~GpPGtGKT~la-~~la~~~--~~~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLR-SAIFEET--QGNVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHH-HHHHHHT--TTCCEEECT
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh--hcceEEEec
Confidence 4899999999999976 3333333 333444443
No 111
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}
Probab=74.32 E-value=1.1 Score=42.13 Aligned_cols=36 Identities=22% Similarity=0.187 Sum_probs=25.5
Q ss_pred CcEEEEcC-CCCCcHHHHHHHHHHHHhCCCEEEEEcC
Q 002359 92 ESVLVSAH-TSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (931)
Q Consensus 92 ~~vlv~ap-TGsGKTl~~~l~i~~~l~~~~rvl~l~P 127 (931)
+.++|++- ||.|||.+...-+....+.|.+|+++=|
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~ 38 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECc
Confidence 35677776 7999999875544444467889988743
No 112
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=73.67 E-value=1.4 Score=43.26 Aligned_cols=96 Identities=18% Similarity=0.080 Sum_probs=61.0
Q ss_pred HHHHHhc------CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCC
Q 002359 84 SVACLER------NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSP 157 (931)
Q Consensus 84 ai~~l~~------g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~ 157 (931)
+++.++. |+-+.+.+|.|+|||..++..+..+.+.+..++|+----++..+..+.+ .-+ .
T Consensus 44 ~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~a~~~---Gvd---------~-- 109 (268)
T d1xp8a1 44 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARAL---GVN---------T-- 109 (268)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHT---TCC---------G--
T ss_pred HHHHHhcCCCccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHHHHHh---CCC---------c--
Confidence 5666653 3567899999999999988888888888999999987777766543333 111 0
Q ss_pred CCCeeEe---cHHHHHHHHhcCccccCcccEEEEeccccCC
Q 002359 158 NASCLVM---TTEILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 158 ~~~IlV~---Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
..++|. |.|...+++..- ..-..+++||+|=+-.+.
T Consensus 110 -d~i~~~~~~~~E~~~~~~~~l-~~~~~~~liIiDSi~al~ 148 (268)
T d1xp8a1 110 -DELLVSQPDNGEQALEIMELL-VRSGAIDVVVVDSVAALT 148 (268)
T ss_dssp -GGCEEECCSSHHHHHHHHHHH-HTTTCCSEEEEECTTTCC
T ss_pred -hhEEEEcCCCHHHHHHHHHHH-HhcCCCcEEEEecccccc
Confidence 123443 334444333211 011357788988887655
No 113
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=73.48 E-value=8.6 Score=39.53 Aligned_cols=111 Identities=18% Similarity=0.180 Sum_probs=59.9
Q ss_pred HHHHHHHHh--cCCcEEEEcCCCCCcHHHHHHHHHHHHh-------CCCEEEEEcCchhhHHHH-----HHHHHHhc---
Q 002359 81 QRVSVACLE--RNESVLVSAHTSAGKTAVAEYAIAMAFR-------DKQRVIYTSPLKALSNQK-----YRELHQEF--- 143 (931)
Q Consensus 81 Q~~ai~~l~--~g~~vlv~apTGsGKTl~~~l~i~~~l~-------~~~rvl~l~P~kaL~~Q~-----~~~l~~~~--- 143 (931)
=.+.+..+. ...|+++.|+.|.|||.+..-.+..... .+.+++.+.+..-++.-. ..++....
T Consensus 31 i~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~ 110 (387)
T d1qvra2 31 IRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEV 110 (387)
T ss_dssp HHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcccCcchhHHHHHHHHHHHh
Confidence 345566663 3457999999999999987533333222 245777777766665433 23333221
Q ss_pred ----CCeEEEe-------------ccccc---------CCCCCee-EecHHHHHHHHhcCccccCcccEEEEeccc
Q 002359 144 ----KDVGLMT-------------GDVTL---------SPNASCL-VMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192 (931)
Q Consensus 144 ----~~vg~~t-------------Gd~~~---------~~~~~Il-V~Tpe~L~~~l~~~~~~l~~l~~vViDEaH 192 (931)
+++-++. |+.+. .++..|+ -+||+-+.. +.+.....+.+..|-++|-+
T Consensus 111 ~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT~~ey~~-~e~d~al~rrF~~v~v~ep~ 185 (387)
T d1qvra2 111 VQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYRE-IEKDPALERRFQPVYVDEPT 185 (387)
T ss_dssp HTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHH-HTTCTTTCSCCCCEEECCCC
T ss_pred ccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCCCcceeeecCHHHHHH-hcccHHHHHhcccccCCCCc
Confidence 1232221 11111 1234444 577788875 46667777888999998876
No 114
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}
Probab=72.65 E-value=1.6 Score=42.67 Aligned_cols=34 Identities=24% Similarity=0.160 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcC
Q 002359 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P 127 (931)
.+.+++.+|+|+|||.++-..+ ..+ +..++++.+
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA-~~~--~~~~~~i~~ 78 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIA-GEA--KVPFFTISG 78 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH-HHH--TCCEEEECS
T ss_pred CCeEEeeCCCCCCccHHHHHHH-HHc--CCCEEEEEh
Confidence 3679999999999999864333 222 444555544
No 115
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}
Probab=72.56 E-value=0.52 Score=43.02 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=15.7
Q ss_pred CcEEEEcCCCCCcHHHHH
Q 002359 92 ESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (931)
+.+++.||+|+|||..+-
T Consensus 8 K~I~i~G~~GsGKTTla~ 25 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVN 25 (192)
T ss_dssp EEEEEECCTTSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 579999999999998763
No 116
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.33 E-value=1.5 Score=42.10 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=37.9
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHh------CCCEEEEEcCchhhHHHHHHHHHHhc
Q 002359 90 RNESVLVSAHTSAGKTAVAEYAIAMAFR------DKQRVIYTSPLKALSNQKYRELHQEF 143 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~------~~~rvl~l~P~kaL~~Q~~~~l~~~~ 143 (931)
.|.-+++++|+|+|||..+.-.+..... ....++++.....+..+....+....
T Consensus 36 ~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (258)
T d1v5wa_ 36 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 95 (258)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHHHHHHHHHhhh
Confidence 4567899999999999987666655442 23467888877776666666555443
No 117
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Probab=72.29 E-value=0.68 Score=41.96 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002359 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
.+|..|++.|++|||||.++
T Consensus 4 ~~g~~I~l~G~~GsGKTTia 23 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIA 23 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 45677889999999999986
No 118
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=72.03 E-value=2.5 Score=44.89 Aligned_cols=53 Identities=11% Similarity=0.104 Sum_probs=40.6
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCC------------CEEEEEcCchhhHHHHHHHHHHhcC
Q 002359 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDK------------QRVIYTSPLKALSNQKYRELHQEFK 144 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~------------~rvl~l~P~kaL~~Q~~~~l~~~~~ 144 (931)
.++||.|.-|||||.+..--++..+..+ ..+|+++=|+.-++++.+++.+..+
T Consensus 17 g~~lv~A~AGsGKT~~l~~r~~~ll~~~~~~~~~~~~~~~~~IL~lTFT~kAA~Emk~RI~~~L~ 81 (485)
T d1w36b1 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (485)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEcCchHHHHHHHHHHHHHHhhCcccccccCCCCcccEeEeccHHHHHHHHHHHHHHHHH
Confidence 5699999999999988666565555321 3589999999999998888766654
No 119
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=70.91 E-value=2.9 Score=40.88 Aligned_cols=34 Identities=26% Similarity=0.252 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcC
Q 002359 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P 127 (931)
.+.+|+.||+|+|||..+-. ++.. -+..++++.+
T Consensus 41 ~~giLL~Gp~GtGKT~l~~a-la~~--~~~~~~~~~~ 74 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKA-IANE--CQANFISIKG 74 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHH-HHHH--TTCEEEEECH
T ss_pred CCeEEEECCCCCcchhHHHH-HHHH--hCCcEEEEEH
Confidence 36799999999999987633 3333 2566677664
No 120
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}
Probab=70.15 E-value=0.91 Score=40.87 Aligned_cols=19 Identities=16% Similarity=0.368 Sum_probs=16.1
Q ss_pred CcEEEEcCCCCCcHHHHHH
Q 002359 92 ESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l 110 (931)
+++++.|++|||||.++-.
T Consensus 1 k~I~liG~~GsGKsTi~k~ 19 (161)
T d1viaa_ 1 KNIVFIGFMGSGKSTLARA 19 (161)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 4789999999999998643
No 121
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=70.09 E-value=0.86 Score=44.60 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=17.3
Q ss_pred hcCCcEEEEcCCCCCcHHH
Q 002359 89 ERNESVLVSAHTSAGKTAV 107 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~ 107 (931)
..|+.+.+.+|+|||||..
T Consensus 42 ~~Ge~vaivG~sGsGKSTL 60 (255)
T d2hyda1 42 EKGETVAFVGMSGGGKSTL 60 (255)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 6788999999999999986
No 122
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}
Probab=69.94 E-value=0.92 Score=40.90 Aligned_cols=20 Identities=20% Similarity=0.476 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCCcHHHHH
Q 002359 90 RNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~ 109 (931)
..+-|++.|++|||||.++-
T Consensus 2 ~~kiI~l~G~~GsGKsTva~ 21 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34668899999999999863
No 123
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}
Probab=69.93 E-value=1.2 Score=43.13 Aligned_cols=20 Identities=15% Similarity=0.416 Sum_probs=17.6
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002359 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
..|+.+.+.+|+|||||...
T Consensus 27 ~~Ge~vaIvG~sGsGKSTLl 46 (241)
T d2pmka1 27 KQGEVIGIVGRSGSGKSTLT 46 (241)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 67889999999999999853
No 124
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=69.51 E-value=1.7 Score=39.51 Aligned_cols=34 Identities=12% Similarity=0.010 Sum_probs=22.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcC
Q 002359 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P 127 (931)
+++.|+.|||||.++....-..-.++..+.++.+
T Consensus 4 ivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~ 37 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 5679999999999875543333345666666654
No 125
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.86 E-value=1.1 Score=41.78 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=19.9
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHH
Q 002359 90 RNESVLVSAHTSAGKTAVAEYAIAMA 115 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~ 115 (931)
.|+-+++.||+|+|||..++-.+...
T Consensus 22 ~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 22 TGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45789999999999998765544444
No 126
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Probab=67.54 E-value=1.7 Score=40.03 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=18.0
Q ss_pred cCCcEEEEcCCCCCcHHHHHHH
Q 002359 90 RNESVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~ 111 (931)
+|-.+++.||+|||||.++-+.
T Consensus 2 ~~~riil~G~pGSGKsT~a~~L 23 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKL 23 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHH
Confidence 3567889999999999987543
No 127
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=67.53 E-value=0.87 Score=43.73 Aligned_cols=27 Identities=11% Similarity=0.042 Sum_probs=21.6
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHH
Q 002359 90 RNESVLVSAHTSAGKTAVAEYAIAMAF 116 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l 116 (931)
.|+-++|.|++|+|||..+.-.+....
T Consensus 33 ~G~l~~i~G~~G~GKT~~~l~~a~~~~ 59 (258)
T d2i1qa2 33 SQSVTEFAGVFGSGKTQIMHQSCVNLQ 59 (258)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 457889999999999988766665554
No 128
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=67.52 E-value=1.7 Score=42.44 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCc
Q 002359 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL 128 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~ 128 (931)
.+.+|+.+|+|+|||..+- +++.. -+..++++.+.
T Consensus 38 ~~giLL~GppGtGKT~l~~-ala~~--~~~~~~~i~~~ 72 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIAR-AVANE--TGAFFFLINGP 72 (258)
T ss_dssp CCEEEEECCTTSSHHHHHH-HHHHH--TTCEEEEECHH
T ss_pred CceeEEecCCCCCchHHHH-HHHHH--hCCeEEEEEch
Confidence 3679999999999998753 22222 35666666554
No 129
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=67.09 E-value=0.83 Score=43.14 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=55.0
Q ss_pred HHHHHHHhCCCEEEEEcCchhhHH--------HHHHHHHH-hcC--CeEEEeccccc-----------CCCCCeeEecHH
Q 002359 110 YAIAMAFRDKQRVIYTSPLKALSN--------QKYRELHQ-EFK--DVGLMTGDVTL-----------SPNASCLVMTTE 167 (931)
Q Consensus 110 l~i~~~l~~~~rvl~l~P~kaL~~--------Q~~~~l~~-~~~--~vg~~tGd~~~-----------~~~~~IlV~Tpe 167 (931)
-.|...+.++.++.|++|..+=+. +.++.+.+ .++ .+++++|..+. +...+|+|+|+
T Consensus 20 ~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~iLVaTt- 98 (206)
T d1gm5a4 20 EFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT- 98 (206)
T ss_dssp HHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSS-
T ss_pred HHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEEEEEEeh-
Confidence 355666788999999999864322 33344433 344 68899999874 34689999998
Q ss_pred HHHHHHhcCccccCcccEEEEeccccCC
Q 002359 168 ILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (931)
Q Consensus 168 ~L~~~l~~~~~~l~~l~~vViDEaH~l~ 195 (931)
.+..+ ..+.++.++|+..++...
T Consensus 99 ----ViE~G-IDip~a~~iii~~a~~fg 121 (206)
T d1gm5a4 99 ----VIEVG-IDVPRANVMVIENPERFG 121 (206)
T ss_dssp ----CCCSC-SCCTTCCEEEBCSCSSSC
T ss_pred ----hhhcc-ccccCCcEEEEEccCCcc
Confidence 34444 357899999999999765
No 130
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}
Probab=66.40 E-value=1.2 Score=40.98 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=16.3
Q ss_pred CcEEEEcCCCCCcHHHHHH
Q 002359 92 ESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l 110 (931)
..+++.||+|||||.++.+
T Consensus 4 m~I~i~GppGsGKsT~a~~ 22 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCEL 22 (189)
T ss_dssp CCEEEEESTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4689999999999998754
No 131
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}
Probab=66.01 E-value=1.1 Score=40.29 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCCcHHHHHH
Q 002359 92 ESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l 110 (931)
+-+++.||+|||||.++-.
T Consensus 7 ~iivl~G~~GsGKsT~a~~ 25 (171)
T d1knqa_ 7 HIYVLMGVSGSGKSAVASE 25 (171)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4477899999999998643
No 132
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}
Probab=65.19 E-value=1.9 Score=38.82 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=17.0
Q ss_pred CcEEEEcCCCCCcHHHHHHHH
Q 002359 92 ESVLVSAHTSAGKTAVAEYAI 112 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i 112 (931)
+.+++.|++|||||.++-...
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHH
Confidence 568899999999999875443
No 133
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=65.18 E-value=2.6 Score=38.42 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=12.7
Q ss_pred EEEcCCCCCcHHHHH
Q 002359 95 LVSAHTSAGKTAVAE 109 (931)
Q Consensus 95 lv~apTGsGKTl~~~ 109 (931)
-|+||+|||||..+-
T Consensus 26 gI~G~~GSGKSTla~ 40 (198)
T d1rz3a_ 26 GIDGLSRSGKTTLAN 40 (198)
T ss_dssp EEEECTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 389999999998753
No 134
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=64.74 E-value=1.8 Score=39.23 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=15.7
Q ss_pred cEEEEcCCCCCcHHHHHH
Q 002359 93 SVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l 110 (931)
++++.||+|||||.++..
T Consensus 2 ~I~i~G~pGSGKsT~a~~ 19 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEK 19 (182)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 589999999999998754
No 135
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=62.73 E-value=2.1 Score=38.95 Aligned_cols=19 Identities=32% Similarity=0.251 Sum_probs=16.3
Q ss_pred cEEEEcCCCCCcHHHHHHH
Q 002359 93 SVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~ 111 (931)
++++.||+|||||.++..-
T Consensus 2 ~I~i~G~pGsGKsT~a~~L 20 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKL 20 (181)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999987653
No 136
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.61 E-value=1.8 Score=39.60 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCCcHHHHH
Q 002359 91 NESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~ 109 (931)
|..++++|++|||||.++-
T Consensus 19 g~vI~L~G~pGSGKTTiAk 37 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSM 37 (195)
T ss_dssp CEEEEEESSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4467789999999999763
No 137
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}
Probab=62.45 E-value=1.3 Score=45.01 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=17.0
Q ss_pred cCCcEEEEcCCCCCcHHHH
Q 002359 90 RNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~ 108 (931)
.++++|+.+|+|+|||..+
T Consensus 27 ~~h~vLl~G~pG~GKT~la 45 (333)
T d1g8pa_ 27 GIGGVLVFGDRGTGKSTAV 45 (333)
T ss_dssp GGCCEEEECCGGGCTTHHH
T ss_pred CCCeEEEECCCCccHHHHH
Confidence 5678999999999999875
No 138
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}
Probab=62.26 E-value=2.1 Score=38.83 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=15.8
Q ss_pred cEEEEcCCCCCcHHHHHHH
Q 002359 93 SVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~ 111 (931)
++++.+|+|||||.++.+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~L 20 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFI 20 (179)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999987443
No 139
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}
Probab=62.11 E-value=2.2 Score=38.87 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=16.3
Q ss_pred cEEEEcCCCCCcHHHHHHHH
Q 002359 93 SVLVSAHTSAGKTAVAEYAI 112 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i 112 (931)
.+++.+|+|||||.++..-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La 21 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIV 21 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999875443
No 140
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=61.31 E-value=10 Score=33.65 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=53.3
Q ss_pred CCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEE
Q 002359 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (931)
Q Consensus 118 ~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (931)
...++|+.|.++.-+.+.++.+......+..++|+.+. +....|+|+|. .+.+|- .+.++++|
T Consensus 26 ~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~Td-----v~~rGi-Di~~v~~V 99 (162)
T d1fuka_ 26 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLARGI-DVQQVSLV 99 (162)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGTTTC-CCCSCSEE
T ss_pred CCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcccceeeccc-----cccccc-cCCCceEE
Confidence 46789999999999999999998888899999998763 34678999986 344554 47788888
Q ss_pred EEec
Q 002359 187 IFDE 190 (931)
Q Consensus 187 ViDE 190 (931)
|.=.
T Consensus 100 I~~d 103 (162)
T d1fuka_ 100 INYD 103 (162)
T ss_dssp EESS
T ss_pred EEec
Confidence 8643
No 141
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=61.09 E-value=2.9 Score=38.52 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=18.4
Q ss_pred HhcCCcEEEEcCCCCCcHHHHH
Q 002359 88 LERNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~ 109 (931)
+.++.-+++.||+|||||.++.
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~ 26 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCE 26 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHH
Confidence 4566778999999999999764
No 142
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=61.05 E-value=2.5 Score=38.57 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCCcHHHH
Q 002359 91 NESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~ 108 (931)
|+-++++||+|+|||.+.
T Consensus 2 G~iivl~GpsG~GK~tl~ 19 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVV 19 (182)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567899999999999864
No 143
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}
Probab=60.75 E-value=2.3 Score=39.09 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=16.1
Q ss_pred cEEEEcCCCCCcHHHHHHHH
Q 002359 93 SVLVSAHTSAGKTAVAEYAI 112 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~i 112 (931)
-+++.||+|||||.++....
T Consensus 8 iI~i~G~pGSGKsT~a~~La 27 (194)
T d1qf9a_ 8 VVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47889999999999865443
No 144
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=60.24 E-value=2.5 Score=38.75 Aligned_cols=17 Identities=18% Similarity=0.499 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCCcHHHH
Q 002359 92 ESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~ 108 (931)
+-++++||+|+|||.+.
T Consensus 2 rpIvl~GpsG~GK~tl~ 18 (186)
T d1gkya_ 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999864
No 145
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=59.95 E-value=4.2 Score=39.18 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=18.0
Q ss_pred hcCCcEEEEcCCCCCcHHHHH
Q 002359 89 ERNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~ 109 (931)
..+..|++.|++|+|||.+|-
T Consensus 21 ~~~~pvlI~Ge~GtGK~~~A~ 41 (247)
T d1ny5a2 21 CAECPVLITGESGVGKEVVAR 41 (247)
T ss_dssp TCCSCEEEECSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCcCHHHHHH
Confidence 567789999999999998763
No 146
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=59.21 E-value=6.7 Score=33.89 Aligned_cols=64 Identities=16% Similarity=0.034 Sum_probs=49.4
Q ss_pred hCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccC----CCCCeeEecHHHHHHHHhcCccccCcccEEE
Q 002359 117 RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLS----PNASCLVMTTEILRGMLYRGSEVLKEVAWVI 187 (931)
Q Consensus 117 ~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~----~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vV 187 (931)
.++.++||.|+|+.-+++.++.|++..-.+..++|+.+.. ...+|+|+|. .+.++-. .++++||
T Consensus 33 ~~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~~~~~~~~~vlvaTd-----~~~~GiD--~~v~~Vi 100 (138)
T d1jr6a_ 33 IKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTNGDVVVVATD-----ALMTGFT--GDFDSVI 100 (138)
T ss_dssp HTTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSCCCTTSSCEEEEESS-----SSCSSSC--CCBSEEE
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchhhhhhhhhcceeehhH-----HHHhccc--cccceEE
Confidence 3567899999999999999999998877888899988754 3578899985 4444433 4677764
No 147
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=59.17 E-value=2.3 Score=39.30 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=15.4
Q ss_pred cEEEEcCCCCCcHHHHHHH
Q 002359 93 SVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~ 111 (931)
-+++.||+|||||.++...
T Consensus 10 iI~i~GppGSGKsT~a~~L 28 (196)
T d1ukza_ 10 VIFVLGGPGAGKGTQCEKL 28 (196)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999986433
No 148
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}
Probab=59.11 E-value=2.8 Score=39.26 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCCCcHHHH
Q 002359 90 RNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~ 108 (931)
+|.-++++||+|+|||.+.
T Consensus 1 ~G~livi~GPSG~GK~tl~ 19 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLI 19 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4677899999999999864
No 149
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=58.69 E-value=1.9 Score=39.18 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCCcHHHH
Q 002359 92 ESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~ 108 (931)
.-++++|++|||||..+
T Consensus 15 ~liil~G~pGsGKST~a 31 (172)
T d1yj5a2 15 EVVVAVGFPGAGKSTFI 31 (172)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45789999999999854
No 150
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}
Probab=58.18 E-value=4.6 Score=35.88 Aligned_cols=32 Identities=31% Similarity=0.259 Sum_probs=21.7
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002359 95 LVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 95 lv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
-|+++.|||||....--+...-.+|.++-++-
T Consensus 5 ~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik 36 (165)
T d1xjca_ 5 QVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 36 (165)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 48999999999875444433335666666653
No 151
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.84 E-value=2.9 Score=38.39 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=15.2
Q ss_pred cEEEEcCCCCCcHHHHHH
Q 002359 93 SVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l 110 (931)
-+++.+|+|||||+++..
T Consensus 3 iI~i~GppGSGKsT~a~~ 20 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCAR 20 (194)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999998743
No 152
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}
Probab=56.14 E-value=4.8 Score=41.22 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=22.3
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002359 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
++.+++.||+|+|||..+. +++..+ +..++.+.
T Consensus 154 ~~~~~~~g~~~~gk~~~~~-~~~~~~--~~~~i~in 186 (362)
T d1svma_ 154 KRYWLFKGPIDSGKTTLAA-ALLELC--GGKALNVN 186 (362)
T ss_dssp CCEEEEECSTTSSHHHHHH-HHHHHH--CCEEECCS
T ss_pred cCeEEEECCCCCCHHHHHH-HHHHHc--CCCEEEEE
Confidence 3578999999999998763 333332 45566553
No 153
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}
Probab=55.46 E-value=4.9 Score=38.93 Aligned_cols=54 Identities=19% Similarity=0.096 Sum_probs=33.5
Q ss_pred HhcCCcEEEEcCCCCCcHHHHHHHHHHHHh-----------CCCEEEEEcCchhhHHHHHHHHHHhc
Q 002359 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFR-----------DKQRVIYTSPLKALSNQKYRELHQEF 143 (931)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~l~i~~~l~-----------~~~rvl~l~P~kaL~~Q~~~~l~~~~ 143 (931)
+..|.-+++.|++|+|||..+...+. ++. .+.+|+|+.--- -..++.+++....
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~-~ia~g~~~~~~~~~~~~~vl~~~~E~-~~~~~~~Rl~~~~ 90 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAA-QIAGGPDLLEVGELPTGPVIYLPAED-PPTAIHHRLHALG 90 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH-HHHTCCCTTCCCCCCCCCEEEEESSS-CHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHH-HHHcCCCcccccccCCCceEEEeccc-hHHHHHHHHHHHh
Confidence 45577889999999999976644332 222 234788876442 2444555555543
No 154
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=55.23 E-value=3.6 Score=37.79 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=14.0
Q ss_pred cEEEEcCCCCCcHHHH
Q 002359 93 SVLVSAHTSAGKTAVA 108 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~ 108 (931)
-++++||+|+|||.++
T Consensus 2 pIvl~GPsGsGK~tl~ 17 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLL 17 (190)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999864
No 155
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Probab=55.01 E-value=3.6 Score=37.74 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCCcHHHHHH
Q 002359 91 NESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l 110 (931)
.-.+++.||+|||||.++..
T Consensus 6 ~mrIiliG~PGSGKtT~a~~ 25 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSR 25 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceeEEEECCCCCCHHHHHHH
Confidence 34689999999999998654
No 156
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=54.48 E-value=3.7 Score=36.55 Aligned_cols=19 Identities=11% Similarity=0.281 Sum_probs=15.6
Q ss_pred cEEEEcCCCCCcHHHHHHH
Q 002359 93 SVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~l~ 111 (931)
++++.|++|+|||.++-..
T Consensus 3 ~IvliG~~G~GKSTig~~L 21 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRL 21 (165)
T ss_dssp SEEEECSTTSSHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHH
Confidence 5778899999999987543
No 157
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=54.25 E-value=3.6 Score=37.27 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=16.3
Q ss_pred CcEEEEcCCCCCcHHHHHHH
Q 002359 92 ESVLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~ 111 (931)
..+++.||.|||||.++...
T Consensus 3 mrIvl~G~pGSGKtT~a~~L 22 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNL 22 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35789999999999987544
No 158
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=53.81 E-value=12 Score=34.54 Aligned_cols=65 Identities=12% Similarity=0.057 Sum_probs=48.9
Q ss_pred hCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccE
Q 002359 117 RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAW 185 (931)
Q Consensus 117 ~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~ 185 (931)
..+.++||.++|+.-+...+..+....-.+..++|+.+. +...+|+|+|. .+.+| ..+.++++
T Consensus 28 ~~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd-----~~~~G-iD~p~v~~ 101 (200)
T d1oywa3 28 QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-----AFGMG-INKPNVRF 101 (200)
T ss_dssp TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----TSCTT-TCCTTCCE
T ss_pred cCCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcccceEEEecc-----hhhhc-cCCCCCCE
Confidence 356789999999999999999999887789999998763 34678888886 23333 23556666
Q ss_pred EE
Q 002359 186 VI 187 (931)
Q Consensus 186 vV 187 (931)
||
T Consensus 102 VI 103 (200)
T d1oywa3 102 VV 103 (200)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 159
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=52.66 E-value=5.9 Score=36.36 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=13.3
Q ss_pred EEEEcCCCCCcHHHH
Q 002359 94 VLVSAHTSAGKTAVA 108 (931)
Q Consensus 94 vlv~apTGsGKTl~~ 108 (931)
++++|.+|||||..|
T Consensus 5 i~l~GlpgsGKSTla 19 (213)
T d1bifa1 5 IVMVGLPARGKTYIS 19 (213)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999875
No 160
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.64 E-value=2.8 Score=39.14 Aligned_cols=15 Identities=40% Similarity=0.543 Sum_probs=12.6
Q ss_pred EEEEcCCCCCcHHHH
Q 002359 94 VLVSAHTSAGKTAVA 108 (931)
Q Consensus 94 vlv~apTGsGKTl~~ 108 (931)
|-++|++|||||.++
T Consensus 5 IgI~G~~gSGKSTla 19 (213)
T d1uj2a_ 5 IGVSGGTASGKSSVC 19 (213)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 347899999999876
No 161
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.12 E-value=15 Score=32.57 Aligned_cols=66 Identities=18% Similarity=0.165 Sum_probs=52.2
Q ss_pred hCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccE
Q 002359 117 RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAW 185 (931)
Q Consensus 117 ~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~ 185 (931)
..+.++|+.++++.-+...+..+......+..++|+.+. +...+|+|+|. .+.+| ..+.++++
T Consensus 32 ~~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g~~~iLv~Td-----~~~rG-iDi~~v~~ 105 (168)
T d2j0sa2 32 LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWARG-LDVPQVSL 105 (168)
T ss_dssp HTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGSSS-CCCTTEEE
T ss_pred CCCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhcCCccEEeccc-----hhccc-ccccCcce
Confidence 356799999999999999999999888889999998863 24678999996 34444 34677888
Q ss_pred EEE
Q 002359 186 VIF 188 (931)
Q Consensus 186 vVi 188 (931)
||.
T Consensus 106 VIn 108 (168)
T d2j0sa2 106 IIN 108 (168)
T ss_dssp EEE
T ss_pred EEE
Confidence 773
No 162
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=50.93 E-value=15 Score=32.58 Aligned_cols=66 Identities=14% Similarity=0.012 Sum_probs=51.1
Q ss_pred hCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccE
Q 002359 117 RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAW 185 (931)
Q Consensus 117 ~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~ 185 (931)
..+.++||.|+++.-+...+..|....-.+..++|+.+. +...+|+|+|.- +.+| ..+.++++
T Consensus 30 ~~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~Td~-----~~~G-id~~~v~~ 103 (171)
T d1s2ma2 30 LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDL-----LTRG-IDIQAVNV 103 (171)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSC-----SSSS-CCCTTEEE
T ss_pred CCCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccCccccccchhH-----hhhc-cccceeEE
Confidence 356799999999999999999999887788889998763 346788888862 3333 34677888
Q ss_pred EEE
Q 002359 186 VIF 188 (931)
Q Consensus 186 vVi 188 (931)
||.
T Consensus 104 VI~ 106 (171)
T d1s2ma2 104 VIN 106 (171)
T ss_dssp EEE
T ss_pred EEe
Confidence 873
No 163
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=50.69 E-value=16 Score=31.81 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=48.8
Q ss_pred CCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEE
Q 002359 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (931)
Q Consensus 118 ~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (931)
.+.++||.++++.-+.+.++.|.+....+..++|+.+. ++...|+|+|.- +.+| ..+..+++|
T Consensus 27 ~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~ilv~T~~-----~~~G-id~~~v~~V 100 (155)
T d1hv8a2 27 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDV-----MSRG-IDVNDLNCV 100 (155)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTT-----HHHH-CCCSCCSEE
T ss_pred CCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhcccceeeeehhH-----Hhhh-hhhccCcEE
Confidence 35689999999999999999999887799999998753 346788888852 2233 236677777
Q ss_pred E
Q 002359 187 I 187 (931)
Q Consensus 187 V 187 (931)
|
T Consensus 101 i 101 (155)
T d1hv8a2 101 I 101 (155)
T ss_dssp E
T ss_pred E
Confidence 7
No 164
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=49.44 E-value=4.6 Score=40.48 Aligned_cols=17 Identities=41% Similarity=0.479 Sum_probs=14.4
Q ss_pred cEEEEcCCCCCcHHHHH
Q 002359 93 SVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~ 109 (931)
+++.++|||+|||..+-
T Consensus 55 ~~lf~Gp~G~GKt~lak 71 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAK 71 (315)
T ss_dssp EEEEBSCSSSSHHHHHH
T ss_pred EEEEECCCcchHHHHHH
Confidence 56889999999998763
No 165
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.20 E-value=8.1 Score=35.89 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=25.8
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE-cCc
Q 002359 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT-SPL 128 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l-~P~ 128 (931)
+|.=+++.|+-|||||..+-...-..-..|.+++++ -|.
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p~ 41 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPE 41 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 455567779999999998755433333566667665 354
No 166
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.76 E-value=3.7 Score=37.31 Aligned_cols=17 Identities=6% Similarity=0.333 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCCcHHHH
Q 002359 92 ESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~ 108 (931)
+-++++||+|+|||.+.
T Consensus 4 k~ivl~Gpsg~GK~tl~ 20 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIK 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 46889999999999864
No 167
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}
Probab=47.26 E-value=7.4 Score=36.57 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=20.6
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE
Q 002359 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l 125 (931)
++|.+|.|||||... -.+...+..+.++.++
T Consensus 3 i~v~G~~GsGKTTLl-~~ll~~~~~~~~~~iv 33 (244)
T d1yrba1 3 VVFVGTAGSGKTTLT-GEFGRYLEDNYKVAYV 33 (244)
T ss_dssp EEEECSTTSSHHHHH-HHHHHHHTTTSCEEEE
T ss_pred EEEEcCCCCcHHHHH-HHHHHHHhhCCeEEEE
Confidence 689999999999753 2344444455555544
No 168
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=46.85 E-value=7.8 Score=37.77 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=26.7
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEc
Q 002359 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~ 126 (931)
+-+++++.=|.|||.++........+.|.||+++.
T Consensus 9 ~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD 43 (296)
T d1ihua1 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS 43 (296)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEe
Confidence 45788999999999987654444446788888776
No 169
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Probab=46.76 E-value=5.4 Score=37.07 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=15.2
Q ss_pred EEEEcCCCCCcHHHHHHHHH
Q 002359 94 VLVSAHTSAGKTAVAEYAIA 113 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~ 113 (931)
+.+.||.|||||.++-...-
T Consensus 6 I~I~GppGSGKgT~ak~La~ 25 (225)
T d1ckea_ 6 ITIDGPSGAGKGTLCKAMAE 25 (225)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56779999999998754433
No 170
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=46.49 E-value=3.7 Score=41.24 Aligned_cols=17 Identities=41% Similarity=0.477 Sum_probs=14.7
Q ss_pred cEEEEcCCCCCcHHHHH
Q 002359 93 SVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~~ 109 (931)
+++.++|||+|||..+-
T Consensus 54 ~~lf~Gp~GvGKT~lak 70 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTV 70 (315)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCcchhHHHHH
Confidence 58899999999998763
No 171
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.37 E-value=15 Score=32.61 Aligned_cols=66 Identities=12% Similarity=-0.016 Sum_probs=48.8
Q ss_pred CCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEE
Q 002359 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (931)
Q Consensus 118 ~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (931)
.+.++||.|+++.-+...++.|.+....+..++|+.+. ++..+|+|+|. ++.+| ..+..+++|
T Consensus 26 ~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T~-----~~~~G-id~~~~~~v 99 (168)
T d1t5ia_ 26 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFGRG-MDIERVNIA 99 (168)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CCSTT-CCGGGCSEE
T ss_pred CCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhccccceeeeccc-----cccch-hhcccchhh
Confidence 45689999999999999999999887799999998863 34678888884 22222 235566666
Q ss_pred EEe
Q 002359 187 IFD 189 (931)
Q Consensus 187 ViD 189 (931)
|+=
T Consensus 100 i~~ 102 (168)
T d1t5ia_ 100 FNY 102 (168)
T ss_dssp EES
T ss_pred hhh
Confidence 543
No 172
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=44.80 E-value=13 Score=36.55 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=41.0
Q ss_pred CCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc-------CCCCCeeEecH
Q 002359 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-------SPNASCLVMTT 166 (931)
Q Consensus 118 ~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~-------~~~~~IlV~Tp 166 (931)
.+++++|.+|+..-+++.+..+++....|..++|...- +...+|+|+|.
T Consensus 35 ~~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~~~~~~~~~~~~~t~ 90 (299)
T d1yksa2 35 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATD 90 (299)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------CCCSEEEESS
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHhhhhcCCcCEEEEec
Confidence 57789999999999999999999988899999997652 34578999986
No 173
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}
Probab=44.33 E-value=17 Score=35.49 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=25.4
Q ss_pred HHHHHHHHH---hcCCcEEEEcCCCCCcHHHHHH
Q 002359 80 FQRVSVACL---ERNESVLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 80 ~Q~~ai~~l---~~g~~vlv~apTGsGKTl~~~l 110 (931)
.=.++|+.+ .+|+.+++.|+.|+|||....-
T Consensus 29 ~~~r~ID~l~PigrGQr~~I~g~~g~GKT~l~~~ 62 (289)
T d1xpua3 29 LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQN 62 (289)
T ss_dssp HHHHHHHHHSCCBTTCEEEEEECSSSSHHHHHHH
T ss_pred ccceeeeecccccCCCeeeEeCCCCCCHHHHHHH
Confidence 334788887 7899999999999999987533
No 174
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Probab=44.10 E-value=8.1 Score=35.91 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002359 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
.+|.-+.+.|.+|||||.++
T Consensus 22 ~kg~vIwltGlsGsGKTTia 41 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLA 41 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34556889999999999865
No 175
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.98 E-value=4.1 Score=39.38 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=17.8
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002359 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
..|+.+.+.+|+|||||...
T Consensus 38 ~~Ge~vaivG~sGsGKSTLl 57 (251)
T d1jj7a_ 38 RPGEVTALVGPNGSGKSTVA 57 (251)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 67889999999999999863
No 176
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}
Probab=42.60 E-value=16 Score=33.54 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=23.4
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEE
Q 002359 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIY 124 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~ 124 (931)
+|+=+++.|+-|||||.......-..-..|.+.++
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~ 35 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMV 35 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEE
Confidence 36668889999999999876544333345544333
No 177
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=42.46 E-value=6.9 Score=36.37 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=14.6
Q ss_pred EEEEcCCCCCcHHHHHHHH
Q 002359 94 VLVSAHTSAGKTAVAEYAI 112 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i 112 (931)
+.+.||.|||||.++..-.
T Consensus 6 IaIdGp~GsGKgT~ak~La 24 (223)
T d1q3ta_ 6 IAIDGPASSGKSTVAKIIA 24 (223)
T ss_dssp EEEECSSCSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4567999999999875433
No 178
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=41.49 E-value=9.3 Score=37.41 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=11.3
Q ss_pred EEcCCCCCcHHHH
Q 002359 96 VSAHTSAGKTAVA 108 (931)
Q Consensus 96 v~apTGsGKTl~~ 108 (931)
++|++|||||..+
T Consensus 32 i~G~qGSGKSTl~ 44 (286)
T d1odfa_ 32 FSGPQGSGKSFTS 44 (286)
T ss_dssp EECCTTSSHHHHH
T ss_pred eECCCCCCHHHHH
Confidence 6999999999754
No 179
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=41.34 E-value=6.7 Score=38.54 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=10.1
Q ss_pred EEEEcCCCCCcHHHH
Q 002359 94 VLVSAHTSAGKTAVA 108 (931)
Q Consensus 94 vlv~apTGsGKTl~~ 108 (931)
+-|+|++|||||.++
T Consensus 7 IgIaG~SGSGKTTva 21 (288)
T d1a7ja_ 7 ISVTGSSGAGTSTVK 21 (288)
T ss_dssp EEEESCC---CCTHH
T ss_pred EEEECCCCCcHHHHH
Confidence 568999999999875
No 180
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=40.98 E-value=17 Score=26.73 Aligned_cols=46 Identities=13% Similarity=0.049 Sum_probs=36.7
Q ss_pred CCccHHHHH-HHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 002359 851 VRPFLMDVI-YCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQL 896 (931)
Q Consensus 851 ~~~~l~~~v-~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ell~qi 896 (931)
+.+.--.++ ..|-.|.|+.+|.+..+++++.+=+.+.|.-.-||++
T Consensus 22 L~~~~r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~~~ra~~~Lr~~ 68 (71)
T d1rp3a2 22 LPEREKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAKALERLREM 68 (71)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhHhCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 444544555 4468999999999999999999988888887777764
No 181
>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}
Probab=40.31 E-value=21 Score=31.49 Aligned_cols=72 Identities=8% Similarity=0.014 Sum_probs=44.8
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeE-ecH
Q 002359 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLV-MTT 166 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV-~Tp 166 (931)
..|++++|.+.=|++|+++|.+. . .+.++.++.-+.+-+.+..+.+...+ .+-...-+......++++| +||
T Consensus 16 ~~~k~vlIlGaGGaarai~~al~--~---~g~~i~I~nRt~~ka~~l~~~~~~~~-~~~~~~~~~~~~~~~dliIN~Tp 88 (170)
T d1nyta1 16 RPGLRILLIGAGGASRGVLLPLL--S---LDCAVTITNRTVSRAEELAKLFAHTG-SIQALSMDELEGHEFDLIINATS 88 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHH--H---TTCEEEEECSSHHHHHHHHHHTGGGS-SEEECCSGGGTTCCCSEEEECCS
T ss_pred CCCCEEEEECCcHHHHHHHHHhc--c---cceEEEeccchHHHHHHHHHHHhhcc-cccccccccccccccceeecccc
Confidence 46789999999999999886432 2 35676777777666666555554443 2322333333345678888 454
No 182
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=39.97 E-value=5 Score=38.80 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=17.7
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002359 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
..|+.+.+.+|+|||||..+
T Consensus 39 ~~Ge~iaivG~sGsGKSTLl 58 (253)
T d3b60a1 39 PAGKTVALVGRSGSGKSTIA 58 (253)
T ss_dssp CTTCEEEEEECTTSSHHHHH
T ss_pred cCCCEEEEECCCCChHHHHH
Confidence 57889999999999999864
No 183
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=39.96 E-value=20 Score=34.69 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=26.2
Q ss_pred HHHHHH---hcCCcEEEEcCCCCCcHHHHHHHHHHH
Q 002359 83 VSVACL---ERNESVLVSAHTSAGKTAVAEYAIAMA 115 (931)
Q Consensus 83 ~ai~~l---~~g~~vlv~apTGsGKTl~~~l~i~~~ 115 (931)
++|+.+ -+|+.+.+.|+.|+|||....-.+...
T Consensus 57 raID~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~ 92 (276)
T d2jdid3 57 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 92 (276)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eeeeeeccccCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence 678776 689999999999999998765544443
No 184
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=39.87 E-value=13 Score=33.98 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=23.1
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE-cCc
Q 002359 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT-SPL 128 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l-~P~ 128 (931)
+.+.|.-|||||..........-..|..|+++ -|.
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P~ 38 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPR 38 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCC
Confidence 57889999999998655443333456666554 353
No 185
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}
Probab=39.78 E-value=6.5 Score=36.41 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=17.7
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002359 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
.+|+-+.+.+|.|+|||..+
T Consensus 25 ~~Gei~~l~G~NGsGKSTLl 44 (200)
T d1sgwa_ 25 EKGNVVNFHGPNGIGKTTLL 44 (200)
T ss_dssp ETTCCEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCChHHHHH
Confidence 57888999999999999864
No 186
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=39.18 E-value=12 Score=36.12 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=23.4
Q ss_pred hcCCc-EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE
Q 002359 89 ERNES-VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (931)
Q Consensus 89 ~~g~~-vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l 125 (931)
..++. +++++.=|.|||.++..-.......|.+|+++
T Consensus 17 ~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllv 54 (279)
T d1ihua2 17 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLT 54 (279)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 34444 55689999999987654333333456676654
No 187
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=38.85 E-value=8 Score=29.14 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=32.7
Q ss_pred CCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHH
Q 002359 864 KGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRA 898 (931)
Q Consensus 864 ~G~~f~~i~~~t~~~EG~ivR~~rRl~ell~qi~~ 898 (931)
.|.|+.+|++.+++..|+|-|.+.--++|+..+..
T Consensus 23 ~~~s~~~Ia~~agvs~~~iY~~F~sK~~L~~~~~~ 57 (74)
T d2g7sa1 23 NSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVS 57 (74)
T ss_dssp GGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHH
T ss_pred cccCHHHHHHHHCcCcchHHHHCcCHHHHHHHHHH
Confidence 56899999999999999999999999999999865
No 188
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=38.62 E-value=30 Score=29.30 Aligned_cols=62 Identities=15% Similarity=0.187 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCChhhhhhccCCccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 002359 822 QLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 891 (931)
Q Consensus 822 ~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~e 891 (931)
.+..+..++.......+.+++..+ +.++.+++. ..|.+..+|.+...+.-|++-|.+.+|++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~lt~~q-------~~vL~~l~~-~~~~t~~~la~~l~~~~~~vsr~l~~L~~ 76 (141)
T d1lnwa_ 15 VFQHVRTRIQSELDCQRLDLTPPD-------VHVLKLIDE-QRGLNLQDLGRQMCRDKALITRKIRELEG 76 (141)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHH-------HHHHHHHHS-STTCBHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCHHH-------HHHHHHHHH-CCCCCHHHHHHHHCccHhHHHHHHHHHHH
Confidence 334555566555544455566543 344444433 56799999999999999999999999976
No 189
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=38.59 E-value=6.7 Score=37.16 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=17.2
Q ss_pred hcCCcEEEEcCCCCCcHHH
Q 002359 89 ERNESVLVSAHTSAGKTAV 107 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~ 107 (931)
.+|+.+.+.+|+|||||..
T Consensus 29 ~~Ge~~~iiG~sGsGKSTL 47 (230)
T d1l2ta_ 29 KEGEFVSIMGPSGSGKSTM 47 (230)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCcchh
Confidence 5788999999999999976
No 190
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.73 E-value=9.6 Score=38.08 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=17.5
Q ss_pred HHHhcCCc--EEEEcCCCCCcHHHH
Q 002359 86 ACLERNES--VLVSAHTSAGKTAVA 108 (931)
Q Consensus 86 ~~l~~g~~--vlv~apTGsGKTl~~ 108 (931)
+.+.+|.+ ++.-|+||||||...
T Consensus 69 ~~~l~G~n~~i~aYGqtgSGKTyT~ 93 (323)
T d1bg2a_ 69 KDVLEGYNGTIFAYGQTSSGKTHTM 93 (323)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHcCCCcceeeecccCCCCceec
Confidence 33467765 678999999999763
No 191
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=37.15 E-value=13 Score=35.26 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCCCcHHHHH
Q 002359 90 RNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~ 109 (931)
.++.++|.||.|+|||....
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~ 47 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIK 47 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHH
Confidence 45678899999999998754
No 192
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=37.14 E-value=7.7 Score=35.06 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCCCcHHHHH
Q 002359 90 RNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~ 109 (931)
.|.-+++.++.|+|||..+.
T Consensus 14 ~g~gvli~G~sG~GKS~lal 33 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECAL 33 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHH
Confidence 56779999999999997653
No 193
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Probab=36.89 E-value=6.9 Score=37.42 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=17.3
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002359 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
..|+-+.+.+|+|||||..+
T Consensus 26 ~~Ge~vaivG~sGsGKSTLl 45 (242)
T d1mv5a_ 26 QPNSIIAFAGPSGGGKSTIF 45 (242)
T ss_dssp CTTEEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 56788999999999999853
No 194
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=36.49 E-value=7.6 Score=37.03 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCCcHHH
Q 002359 89 ERNESVLVSAHTSAGKTAV 107 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~ 107 (931)
.+|+-+-+.+|+|||||..
T Consensus 27 ~~Ge~~~liG~sGaGKSTl 45 (240)
T d1g2912 27 KDGEFMILLGPSGCGKTTT 45 (240)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCChHHHH
Confidence 5788899999999999976
No 195
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=36.02 E-value=1.5e+02 Score=27.79 Aligned_cols=116 Identities=15% Similarity=0.106 Sum_probs=76.6
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC----CeEEEecccccCCCCCeeEe
Q 002359 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----DVGLMTGDVTLSPNASCLVM 164 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~----~vg~~tGd~~~~~~~~IlV~ 164 (931)
.+..+.++-+.||||=-. ++++.++..+.+++-+=...+-+....+.++.... ++....+|....+
T Consensus 94 i~PG~~VLE~G~GsG~lt---~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~------- 163 (264)
T d1i9ga_ 94 IFPGARVLEAGAGSGALT---LSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE------- 163 (264)
T ss_dssp CCTTCEEEEECCTTSHHH---HHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC-------
T ss_pred CCCCCEEEecCcCCcHHH---HHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc-------
Confidence 345678899999999443 55666777778877777777766666666766532 5666666643211
Q ss_pred cHHHHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCCChHHHHHHH
Q 002359 165 TTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWI 233 (931)
Q Consensus 165 Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~n~~e~~~~l 233 (931)
..-..++.|++| +.++ -..++.+...|.+.-.++.++.|+.......+-+
T Consensus 164 -------------~~~~~fDaV~ld----lp~P--~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l 213 (264)
T d1i9ga_ 164 -------------LPDGSVDRAVLD----MLAP--WEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEAL 213 (264)
T ss_dssp -------------CCTTCEEEEEEE----SSCG--GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred -------------ccCCCcceEEEe----cCCH--HHHHHHHHhccCCCCEEEEEeCccChHHHHHHHH
Confidence 112357888886 5443 4556777788888888999988876554444444
No 196
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}
Probab=35.77 E-value=5.8 Score=37.91 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCCCcHHH
Q 002359 89 ERNESVLVSAHTSAGKTAV 107 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~ 107 (931)
.+|+-+-+.+|+|||||..
T Consensus 29 ~~Ge~~~iiG~sGsGKSTL 47 (240)
T d3dhwc1 29 PAGQIYGVIGASGAGKSTL 47 (240)
T ss_dssp CSSCEEEEEESTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 6788899999999999975
No 197
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.38 E-value=9.4 Score=37.32 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=17.2
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002359 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
.+|+-+.+.+|+|||||...
T Consensus 60 ~~Ge~vaivG~nGsGKSTLl 79 (281)
T d1r0wa_ 60 EKGEMLAITGSTGSGKTSLL 79 (281)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred cCCCEEEEECCCCChHHHHH
Confidence 56788999999999999863
No 198
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=35.29 E-value=22 Score=30.52 Aligned_cols=57 Identities=19% Similarity=0.308 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCCCCChhhhhhccCCccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 002359 826 SARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 891 (931)
Q Consensus 826 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~e 891 (931)
+...++.+.+.+|+..+. ..+..+.+.+-.+.|+.+|.+.++++-|++=|.+++|.+
T Consensus 11 ~~~~~~~~~~~~Gl~~~~---------~~i~~~L~~~~~plt~~ela~~l~vsk~~vs~~l~~L~~ 67 (151)
T d1ku9a_ 11 IIELFSELAKIHGLNKSV---------GAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEE 67 (151)
T ss_dssp HHHHHHHHHHHTTCCHHH---------HHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHH---------HHHHHHHHhCCCCcCHHHHHHHhCCCcchHHHHHHHHHH
Confidence 344556677788986543 234444555445579999999999999999999999887
No 199
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}
Probab=34.53 E-value=9.3 Score=34.46 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCCCcHHHHH
Q 002359 90 RNESVLVSAHTSAGKTAVAE 109 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~ 109 (931)
.|.-+++.++.|+|||..+.
T Consensus 13 ~g~gvl~~G~sG~GKStlal 32 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETAL 32 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHH
Confidence 46779999999999998653
No 200
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=34.08 E-value=37 Score=30.90 Aligned_cols=76 Identities=16% Similarity=0.002 Sum_probs=50.2
Q ss_pred cCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhhccceeccCCCCHHH
Q 002359 327 RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVI 406 (931)
Q Consensus 327 ~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~hg~l~~~~ 406 (931)
..+..++|.|+++..|..+...+...... ....+...+|+.....
T Consensus 70 ~~~~~~lil~pt~~l~~q~~~~~~~~~~~-----------------------------------~~~~v~~~~g~~~~~~ 114 (208)
T d1hv8a1 70 NNGIEAIILTPTRELAIQVADEIESLKGN-----------------------------------KNLKIAKIYGGKAIYP 114 (208)
T ss_dssp SSSCCEEEECSCHHHHHHHHHHHHHHHCS-----------------------------------SCCCEEEECTTSCHHH
T ss_pred ccCcceEEEeeccccchhhhhhhhhhccc-----------------------------------CCeEEEEeeCCCChHH
Confidence 34567999999999999988777542111 1123677888887666
Q ss_pred HHHHHHHHhcCCceEEEecch-----h-hcccCCCCcEEEEe
Q 002359 407 KELVELLFQEGLVKALFATET-----F-AMGLNMPAKTVVFT 442 (931)
Q Consensus 407 R~~v~~~F~~g~i~vLvaT~~-----l-a~GIdip~~~vVI~ 442 (931)
..... + ..+|||+|+- + ...+++..+.++|.
T Consensus 115 ~~~~l---~--~~~IlV~TP~~l~~~l~~~~~~~~~l~~lVi 151 (208)
T d1hv8a1 115 QIKAL---K--NANIVVGTPGRILDHINRGTLNLKNVKYFIL 151 (208)
T ss_dssp HHHHH---H--TCSEEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred HHHhc---C--CCCEEEEChHHHHHHHHcCCCCcccCcEEEE
Confidence 54433 2 2579999952 3 34668888876654
No 201
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}
Probab=33.87 E-value=8.6 Score=34.81 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=13.5
Q ss_pred EEEcCCCCCcHHHHHH
Q 002359 95 LVSAHTSAGKTAVAEY 110 (931)
Q Consensus 95 lv~apTGsGKTl~~~l 110 (931)
-++|+.|||||.++-+
T Consensus 7 gitG~~gSGKstva~~ 22 (191)
T d1uf9a_ 7 GITGNIGSGKSTVAAL 22 (191)
T ss_dssp EEEECTTSCHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 3789999999998764
No 202
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}
Probab=33.58 E-value=15 Score=36.22 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=13.2
Q ss_pred EEEEcCCCCCcHHHHH
Q 002359 94 VLVSAHTSAGKTAVAE 109 (931)
Q Consensus 94 vlv~apTGsGKTl~~~ 109 (931)
|-|+|+.|||||..+-
T Consensus 83 IGIaG~sgSGKSTla~ 98 (308)
T d1sq5a_ 83 ISIAGSVAVGKSTTAR 98 (308)
T ss_dssp EEEEECTTSSHHHHHH
T ss_pred EEEeCCCCCCCcHHHH
Confidence 4589999999998753
No 203
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=33.52 E-value=27 Score=29.15 Aligned_cols=50 Identities=16% Similarity=0.176 Sum_probs=38.3
Q ss_pred HHHHcCCCCChhhhhhccCCccHHHHHHHhhC-CCCHHHHHhhcCCCcchHHHHHHHHHH
Q 002359 833 IQNECKLEVNVDEYVESTVRPFLMDVIYCWSK-GATFAEVIQMTDIFEGSIIRSARRLDE 891 (931)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~l~~~v~~Wa~-G~~f~~i~~~t~~~EG~ivR~~rRl~e 891 (931)
+..++|+..+ + +..+..++.|-. |.+..+|.+...+.-+.+-|.+.||++
T Consensus 25 ~~k~~~Ls~~--q-------~~vL~~l~~~~~~~~~~~~ia~~l~~~~~~vs~~v~~L~~ 75 (125)
T d1p4xa2 25 IKKHLTLSFV--E-------FTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKK 75 (125)
T ss_dssp HHHHCSSCHH--H-------HHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHcCCCHH--H-------HHHHHHHHHccCCCccHHHHHHHHCCCcchHHHHHHHHHh
Confidence 4556776443 2 345566677765 579999999999999999999999986
No 204
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}
Probab=33.44 E-value=9.8 Score=34.06 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCCcHHHH
Q 002359 90 RNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~ 108 (931)
.|.-|++.++.|+|||..+
T Consensus 14 ~g~gvli~G~sg~GKS~la 32 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETA 32 (169)
T ss_dssp TTEEEEEEESTTSSHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHH
Confidence 4678999999999999765
No 205
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=33.40 E-value=16 Score=33.92 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=21.0
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE
Q 002359 95 LVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (931)
Q Consensus 95 lv~apTGsGKTl~~~l~i~~~l~~~~rvl~l 125 (931)
+.++.-|.|||.++.--.......|.+|+++
T Consensus 7 v~~~kGGvGKTtia~nLA~~la~~g~~Vlli 37 (237)
T d1g3qa_ 7 IVSGKGGTGKTTVTANLSVALGDRGRKVLAV 37 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 4457889999988754333333567788777
No 206
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}
Probab=33.25 E-value=5.8 Score=35.21 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=28.1
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHH
Q 002359 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQ 134 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q 134 (931)
.-+++.++-|+|||.-. -.+++.+.- .--|.+||=.|+++
T Consensus 34 ~ii~L~G~LGaGKTtfv-r~~~~~lg~--~~~V~SPTF~l~~~ 73 (158)
T d1htwa_ 34 IMVYLNGDLGAGKTTLT-RGMLQGIGH--QGNVKSPTYTLVEE 73 (158)
T ss_dssp EEEEEECSTTSSHHHHH-HHHHHHTTC--CSCCCCCTTTCEEE
T ss_pred eEEEEecCCCccHHHHH-HHHHhhccc--ccccCCCceEEEEe
Confidence 34778999999999743 455566533 33478999888764
No 207
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=32.78 E-value=8.5 Score=34.94 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=13.7
Q ss_pred cEEEEcCCCCCcHHHH
Q 002359 93 SVLVSAHTSAGKTAVA 108 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~ 108 (931)
-+++.|+.|||||..+
T Consensus 11 ~I~ieG~~GsGKTTl~ 26 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYL 26 (197)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3778999999999864
No 208
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=32.66 E-value=9.5 Score=36.10 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=16.8
Q ss_pred hcCCcEEEEcCCCCCcHHH
Q 002359 89 ERNESVLVSAHTSAGKTAV 107 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~ 107 (931)
.+|+-+.+.+|.|||||..
T Consensus 24 ~~Gei~~liGpsGsGKSTL 42 (232)
T d2awna2 24 HEGEFVVFVGPSGCGKSTL 42 (232)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCChHHHH
Confidence 5688899999999999975
No 209
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=31.28 E-value=40 Score=31.47 Aligned_cols=56 Identities=13% Similarity=0.234 Sum_probs=39.8
Q ss_pred CCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC-CeEEEecccc
Q 002359 99 HTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDVT 154 (931)
Q Consensus 99 pTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~-~vg~~tGd~~ 154 (931)
...|||.....-.+......|.++||.+..+.-.+-....+...++ .+..++|+++
T Consensus 65 ~~~S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~ 121 (244)
T d1z5za1 65 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELS 121 (244)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSC
T ss_pred hhhhhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccc
Confidence 3567887654444445556788999999998877766666665544 7888899875
No 210
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}
Probab=31.26 E-value=15 Score=37.32 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=21.3
Q ss_pred CCHHHHHHHH--------HHhcCCc--EEEEcCCCCCcHHHH
Q 002359 77 LDPFQRVSVA--------CLERNES--VLVSAHTSAGKTAVA 108 (931)
Q Consensus 77 l~~~Q~~ai~--------~l~~g~~--vlv~apTGsGKTl~~ 108 (931)
++.-|.+.+. .+.+|.+ ++.-++||||||...
T Consensus 90 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifaYGqTGSGKTyTm 131 (362)
T d1v8ka_ 90 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 131 (362)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccCceEEeeccCCCCCceee
Confidence 3444666543 3356765 566799999999763
No 211
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Probab=31.18 E-value=14 Score=37.42 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=16.4
Q ss_pred HHhcCCc--EEEEcCCCCCcHHH
Q 002359 87 CLERNES--VLVSAHTSAGKTAV 107 (931)
Q Consensus 87 ~l~~g~~--vlv~apTGsGKTl~ 107 (931)
.+.+|.+ ++.-|+||||||..
T Consensus 74 ~~l~G~n~ti~aYG~tgSGKT~T 96 (354)
T d1goja_ 74 DILNGYNGTVFAYGQTGAGKSYT 96 (354)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHH
T ss_pred HhhccCceeEEecccCCCCccee
Confidence 3367765 67789999999976
No 212
>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}
Probab=31.01 E-value=74 Score=29.78 Aligned_cols=62 Identities=19% Similarity=0.102 Sum_probs=43.0
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccc
Q 002359 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVT 154 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~ 154 (931)
++|+.+|| ||+++-+-..++. .....|.+|+++.-..+-..+..+++++..+++-.+..|.+
T Consensus 9 L~gK~alI---TGas~GIG~aia~-~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs 70 (255)
T d1fmca_ 9 LDGKCAII---TGAGAGIGKEIAI-TFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDIT 70 (255)
T ss_dssp CTTCEEEE---TTTTSHHHHHHHH-HHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCCEEEE---eCCCcHHHHHHHH-HHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 46788887 6666655533332 22366889888887777788888889887777766777654
No 213
>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}
Probab=30.98 E-value=41 Score=29.60 Aligned_cols=72 Identities=11% Similarity=0.090 Sum_probs=47.0
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecH
Q 002359 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT 166 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp 166 (931)
.++++++|.+.=|+||++++.+ .. .+.++.++.-+.+=+.+..+.+.... ++-.+.-+.....+++++|-|+
T Consensus 16 ~~~k~vlIlGaGGaarai~~aL--~~---~~~~i~I~nR~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~diiIN~t 87 (171)
T d1p77a1 16 RPNQHVLILGAGGATKGVLLPL--LQ---AQQNIVLANRTFSKTKELAERFQPYG-NIQAVSMDSIPLQTYDLVINAT 87 (171)
T ss_dssp CTTCEEEEECCSHHHHTTHHHH--HH---TTCEEEEEESSHHHHHHHHHHHGGGS-CEEEEEGGGCCCSCCSEEEECC
T ss_pred CCCCEEEEECCcHHHHHHHHHH--cc---cCceeeeccchHHHHHHHHHHHhhcc-ccchhhhccccccccceeeecc
Confidence 4578999998888888876543 22 45788888888777777777765443 3333333333345788888665
No 214
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}
Probab=30.91 E-value=11 Score=34.93 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=13.9
Q ss_pred EEEEcCCCCCcHHHHHH
Q 002359 94 VLVSAHTSAGKTAVAEY 110 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l 110 (931)
+-|+|+.|||||.++-+
T Consensus 6 IgitG~igSGKStv~~~ 22 (208)
T d1vhta_ 6 VALTGGIGSGKSTVANA 22 (208)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCcCCHHHHHHH
Confidence 34799999999998753
No 215
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}
Probab=30.61 E-value=11 Score=34.72 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.2
Q ss_pred EEEEcCCCCCcHHHHH
Q 002359 94 VLVSAHTSAGKTAVAE 109 (931)
Q Consensus 94 vlv~apTGsGKTl~~~ 109 (931)
+-++|+.|||||.++-
T Consensus 5 IgITG~igSGKStv~~ 20 (205)
T d1jjva_ 5 VGLTGGIGSGKTTIAN 20 (205)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3479999999999864
No 216
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}
Probab=30.20 E-value=13 Score=37.47 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=17.0
Q ss_pred HHHhcCCc--EEEEcCCCCCcHHH
Q 002359 86 ACLERNES--VLVSAHTSAGKTAV 107 (931)
Q Consensus 86 ~~l~~g~~--vlv~apTGsGKTl~ 107 (931)
+.+.+|.+ ++.-++||||||..
T Consensus 74 ~~~l~G~n~~i~aYGqtgSGKTyT 97 (345)
T d1x88a1 74 DEVIMGYNCTIFAYGQTGTGKTFT 97 (345)
T ss_dssp HHHHTTCEEEEEEEECTTSSHHHH
T ss_pred HHHhccCCceEEeeeeccccceEE
Confidence 34467765 56899999999975
No 217
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}
Probab=29.87 E-value=14 Score=37.26 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=16.9
Q ss_pred HHHhcCCc--EEEEcCCCCCcHHH
Q 002359 86 ACLERNES--VLVSAHTSAGKTAV 107 (931)
Q Consensus 86 ~~l~~g~~--vlv~apTGsGKTl~ 107 (931)
+.+.+|.+ ++..++||||||..
T Consensus 80 ~~~l~G~n~ti~aYGqTgSGKT~T 103 (349)
T d2zfia1 80 QHAFEGYNVCIFAYGQTGAGKSYT 103 (349)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhccCceeeeeccCCCCCcee
Confidence 33467765 67899999999976
No 218
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=29.86 E-value=11 Score=35.71 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=17.4
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002359 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
.+|+-+-+.+|.|||||...
T Consensus 30 ~~Ge~~~liGpsGaGKSTLl 49 (239)
T d1v43a3 30 KDGEFLVLLGPSGCGKTTTL 49 (239)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCChHHHHH
Confidence 56888999999999999863
No 219
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=29.34 E-value=23 Score=32.61 Aligned_cols=32 Identities=16% Similarity=0.105 Sum_probs=22.2
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE
Q 002359 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l 125 (931)
.+.++.=|.|||.++.-.....-+.|.+|+++
T Consensus 5 av~s~KGGvGKTtia~nlA~~la~~g~~Vlli 36 (232)
T d1hyqa_ 5 TVASGKGGTGKTTITANLGVALAQLGHDVTIV 36 (232)
T ss_dssp EEEESSSCSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEECCCCCChHHHHHHHHHHHHHhCCCCEEEE
Confidence 35678889999998764333333567888776
No 220
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}
Probab=29.26 E-value=12 Score=35.65 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002359 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
.+|+-+-+.+|.|+|||..+
T Consensus 30 ~~Gei~~liGpnGaGKSTl~ 49 (240)
T d1ji0a_ 30 PRGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHH
Confidence 57888999999999999864
No 221
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}
Probab=28.99 E-value=14 Score=37.45 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=17.9
Q ss_pred HHHHhcCCc--EEEEcCCCCCcHHHH
Q 002359 85 VACLERNES--VLVSAHTSAGKTAVA 108 (931)
Q Consensus 85 i~~l~~g~~--vlv~apTGsGKTl~~ 108 (931)
++.+.+|.+ ++.-|+||||||...
T Consensus 67 v~~~l~G~n~~i~aYGqTGSGKTyTm 92 (364)
T d1sdma_ 67 VQSAVDGYNVCIFAYGQTGSGKTFTI 92 (364)
T ss_dssp HHHHHTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCceeeeccccCCCCccccc
Confidence 444567765 577899999999763
No 222
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=28.98 E-value=14 Score=30.57 Aligned_cols=39 Identities=8% Similarity=0.196 Sum_probs=33.3
Q ss_pred ccHHHHHHHhh-CCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 002359 853 PFLMDVIYCWS-KGATFAEVIQMTDIFEGSIIRSARRLDE 891 (931)
Q Consensus 853 ~~l~~~v~~Wa-~G~~f~~i~~~t~~~EG~ivR~~rRl~e 891 (931)
+.++..++.|- .|.+-.+|.+...+..+++-|.+.||++
T Consensus 35 ~~vL~~l~~~~~~~~t~~ela~~l~~~~~~vs~~i~~Le~ 74 (115)
T d1hsja1 35 IYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKD 74 (115)
T ss_dssp HHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 35667778885 4699999999999999999999999975
No 223
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=28.93 E-value=34 Score=31.10 Aligned_cols=55 Identities=11% Similarity=0.059 Sum_probs=34.5
Q ss_pred HHHHhCCCEEEEEcCchhhHHHHHHHHHHhc------------------------------CCeEEEeccccc-------
Q 002359 113 AMAFRDKQRVIYTSPLKALSNQKYRELHQEF------------------------------KDVGLMTGDVTL------- 155 (931)
Q Consensus 113 ~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~------------------------------~~vg~~tGd~~~------- 155 (931)
...+..+..+|+.+|+|.-+...+..+.... ..++..+|+.+.
T Consensus 34 ~~~i~~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~~ie 113 (201)
T d2p6ra4 34 EECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVE 113 (201)
T ss_dssp HHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHH
T ss_pred HHHHHcCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhHHHHH
Confidence 3445556667777777666655555544321 137788888752
Q ss_pred ----CCCCCeeEecHH
Q 002359 156 ----SPNASCLVMTTE 167 (931)
Q Consensus 156 ----~~~~~IlV~Tpe 167 (931)
+...+|+|+|..
T Consensus 114 ~~f~~g~i~vlvaT~~ 129 (201)
T d2p6ra4 114 DAFRRGNIKVVVATPT 129 (201)
T ss_dssp HHHHTTSCCEEEECST
T ss_pred HHHhCCCceEEEechH
Confidence 446788999874
No 224
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=28.80 E-value=8.7 Score=36.29 Aligned_cols=19 Identities=37% Similarity=0.427 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCCcHHH
Q 002359 89 ERNESVLVSAHTSAGKTAV 107 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~ 107 (931)
.+|+-+.+.+|.|||||..
T Consensus 24 ~~Ge~~~liGpsGaGKSTl 42 (229)
T d3d31a2 24 ESGEYFVILGPTGAGKTLF 42 (229)
T ss_dssp CTTCEEEEECCCTHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHH
Confidence 5688899999999999986
No 225
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}
Probab=28.77 E-value=15 Score=36.95 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=15.8
Q ss_pred hcCCc--EEEEcCCCCCcHHHH
Q 002359 89 ERNES--VLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~--vlv~apTGsGKTl~~ 108 (931)
.+|.+ ++.-++||||||...
T Consensus 79 l~G~n~~i~aYGqtgSGKT~T~ 100 (342)
T d1f9va_ 79 LDGYNVCIFAYGQTGSGKTFTM 100 (342)
T ss_dssp GGTCCEEEEEECCTTSSHHHHH
T ss_pred hcccccceeeeeccCCcccccc
Confidence 55664 677999999999764
No 226
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=28.74 E-value=37 Score=24.65 Aligned_cols=46 Identities=17% Similarity=0.142 Sum_probs=35.0
Q ss_pred CCccHHHHHH-HhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 002359 851 VRPFLMDVIY-CWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQL 896 (931)
Q Consensus 851 ~~~~l~~~v~-~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ell~qi 896 (931)
+.+.--+++. .+-.|.|+.||.+..++.+|.+=..+.|--.-||..
T Consensus 19 Lp~~~r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~l~ra~~~Lr~~ 65 (68)
T d1or7a1 19 LPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 65 (68)
T ss_dssp SCHHHHHHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 3444445444 448999999999999999999988888877666653
No 227
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=28.32 E-value=15 Score=37.37 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=17.7
Q ss_pred HHHHhcCCc--EEEEcCCCCCcHHH
Q 002359 85 VACLERNES--VLVSAHTSAGKTAV 107 (931)
Q Consensus 85 i~~l~~g~~--vlv~apTGsGKTl~ 107 (931)
++.+.+|.| ++..|+||||||..
T Consensus 117 v~~vl~G~n~ti~aYGqtGSGKT~T 141 (368)
T d2ncda_ 117 IQSALDGYNICIFAYGQTGSGKTYT 141 (368)
T ss_dssp HHHHHTTCEEEEEEECSTTSSHHHH
T ss_pred HHHHhcccceeEEeeccCCCccceE
Confidence 444567765 67899999999976
No 228
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=28.05 E-value=5.6 Score=38.06 Aligned_cols=19 Identities=32% Similarity=0.372 Sum_probs=17.3
Q ss_pred hcCCcEEEEcCCCCCcHHH
Q 002359 89 ERNESVLVSAHTSAGKTAV 107 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~ 107 (931)
.+|+-+.+.+|+|||||..
T Consensus 29 ~~Ge~~~iiG~sGsGKSTl 47 (242)
T d1oxxk2 29 ENGERFGILGPSGAGKTTF 47 (242)
T ss_dssp CTTCEEEEECSCHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHH
Confidence 6788999999999999986
No 229
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.96 E-value=44 Score=29.21 Aligned_cols=65 Identities=22% Similarity=0.236 Sum_probs=49.4
Q ss_pred CCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEeccccc-----------CCCCCeeEecHHHHHHHHhcCccccCcccEE
Q 002359 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (931)
Q Consensus 118 ~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (931)
...++|+.+.++.-+...+..+....-.+..++|+.+. +....|+|+|.- +.+| ..+.++.+|
T Consensus 31 ~~~~~lIF~~~~~~~~~l~~~l~~~~~~~~~~hg~~~~~~R~~~~~~F~~g~~~ilv~Td~-----~~~G-id~~~v~~V 104 (168)
T d2rb4a1 31 TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-----CARG-IDVKQVTIV 104 (168)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-----CCTT-TCCTTEEEE
T ss_pred CCCcEEEEcCHHHHHHHHHHHHHhcCCcceecccchhhHHHHHHhhhhcCCceeeeechhh-----hhhh-hccccccEE
Confidence 45799999999999999999998877789999998863 346788888752 3333 346677777
Q ss_pred EE
Q 002359 187 IF 188 (931)
Q Consensus 187 Vi 188 (931)
|.
T Consensus 105 i~ 106 (168)
T d2rb4a1 105 VN 106 (168)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 230
>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}
Probab=27.40 E-value=86 Score=29.41 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=39.4
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHH-HhCCCEEEEEcCch-hhHHHHHHHHHHhcCCeEEEeccc
Q 002359 89 ERNESVLVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPLK-ALSNQKYRELHQEFKDVGLMTGDV 153 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~-l~~~~rvl~l~P~k-aL~~Q~~~~l~~~~~~vg~~tGd~ 153 (931)
++|+.+|| ||+++-+-.. +... .+.|.+|+++.-.. ...++..+++++..+++-.+..|.
T Consensus 5 L~gK~alI---TGas~GIG~a--ia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv 66 (261)
T d1geea_ 5 LEGKVVVI---TGSSTGLGKS--MAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDV 66 (261)
T ss_dssp GTTCEEEE---TTCSSHHHHH--HHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred CCCCEEEE---eCCCcHHHHH--HHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccC
Confidence 46787777 5666555432 3333 35688888887654 577888888888766666666664
No 231
>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.31 E-value=68 Score=29.88 Aligned_cols=84 Identities=13% Similarity=0.062 Sum_probs=53.5
Q ss_pred hcCCcEEEEcCCC-CCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHH
Q 002359 89 ERNESVLVSAHTS-AGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTE 167 (931)
Q Consensus 89 ~~g~~vlv~apTG-sGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe 167 (931)
..|+.++|.+.++ -|+.++.. ..+.|.+|+++.-..+=.++..+++....+++-.+..|.+ .++
T Consensus 5 l~Gkv~lITGas~GIG~~ia~~-----la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs----------~~~ 69 (244)
T d1yb1a_ 5 VTGEIVLITGAGHGIGRLTAYE-----FAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCS----------NRE 69 (244)
T ss_dssp CTTCEEEEETTTSHHHHHHHHH-----HHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT----------CHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHH-----HHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCC----------CHH
Confidence 3578888866554 56555432 2367899999999888888888888887767766666653 344
Q ss_pred HHHHHHhcCccccCcccEEE
Q 002359 168 ILRGMLYRGSEVLKEVAWVI 187 (931)
Q Consensus 168 ~L~~~l~~~~~~l~~l~~vV 187 (931)
.+.+++..-...+..++++|
T Consensus 70 ~v~~~~~~i~~~~g~idili 89 (244)
T d1yb1a_ 70 DIYSSAKKVKAEIGDVSILV 89 (244)
T ss_dssp HHHHHHHHHHHHTCCCSEEE
T ss_pred HHHHHHHHHHHHcCCCceeE
Confidence 44444433222344555554
No 232
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.14 E-value=13 Score=34.04 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCCcHHH
Q 002359 92 ESVLVSAHTSAGKTAV 107 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~ 107 (931)
++|++.|++|+|||..
T Consensus 1 k~V~ivG~~~~GKTsL 16 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLL 16 (207)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5799999999999985
No 233
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=27.01 E-value=23 Score=30.16 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhcCCccC-----CC-----ccchhhhhhhcccCCchhHHHHHHhhCCCCCCCHHHHHHHhhcc
Q 002359 736 RDELKNRSRVLKKLGHIDA-----DG-----VVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 800 (931)
Q Consensus 736 ~~e~~~~~~vL~~lgyid~-----~~-----~vt~kGrvA~ei~s~~eLlltEll~~g~f~~l~p~eiaAllS~~ 800 (931)
.+...+.++.|++.|||.. |. .+|.||+-+.+-. .-..+-..+.+|.+++++|...++.++
T Consensus 64 ~~~vsr~l~~L~~~G~v~r~~~~~D~R~~~l~lT~~G~~~~~~~----~~~~~~~~~~~~~~ls~~e~~~l~~~L 134 (141)
T d1lnwa_ 64 KALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHQHA----EAIMSRVHDELFAPLTPVEQATLVHLL 134 (141)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSSSSSEEEEECHHHHHHHHHH----HHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHhhceeeeccCCCCcchhhccCHHHHHHHHHH----HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4567889999999999952 22 5899999765433 335566778888999999998887654
No 234
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}
Probab=26.81 E-value=14 Score=35.60 Aligned_cols=20 Identities=10% Similarity=0.307 Sum_probs=17.4
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002359 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
.+|+-+-+.+|.|||||..+
T Consensus 26 ~~GEi~~iiG~sGsGKSTLl 45 (258)
T d1b0ua_ 26 RAGDVISIIGSSGSGKSTFL 45 (258)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 57888999999999999764
No 235
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=26.65 E-value=26 Score=29.73 Aligned_cols=71 Identities=10% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHhhcCCc----cCCC------ccchhhhhhhcccCCchhHHHHHHhhCCCCCCCHHHHH
Q 002359 725 SKMRDSQIQKFRDELKNRSRVLKKLGHI----DADG------VVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 794 (931)
Q Consensus 725 ~~~~~~~~~~~~~e~~~~~~vL~~lgyi----d~~~------~vt~kGrvA~ei~s~~eLlltEll~~g~f~~l~p~eia 794 (931)
.+|.+ .-..-.+...+.++-|.+.||| |.++ .+|.+|+-.++-. .-.-+-.+..+|.+|+++|+.
T Consensus 53 ~~la~-~~~i~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~lT~~G~~~~~~~----~~~~~~~~~~~~~~l~~~e~~ 127 (143)
T d1s3ja_ 53 SEIAE-RMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEV----LAGRKAIMARYLSFLTEEEML 127 (143)
T ss_dssp HHHHH-HHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHH----HHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHH-HHCcCHHHHHHHHHHHHHhhhheeeeecCCCCceEEEECHHHHHHHHHH----HHHHHHHHHHHHhCCCHHHHH
Q ss_pred HHhhcc
Q 002359 795 ALASCF 800 (931)
Q Consensus 795 AllS~~ 800 (931)
.+...|
T Consensus 128 ~l~~~l 133 (143)
T d1s3ja_ 128 QAAHIT 133 (143)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 236
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}
Probab=26.51 E-value=18 Score=40.12 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=25.6
Q ss_pred CCHHHH--HHHHHH---hcCCcEEEEcCCCCCcHHHHHHHHH
Q 002359 77 LDPFQR--VSVACL---ERNESVLVSAHTSAGKTAVAEYAIA 113 (931)
Q Consensus 77 l~~~Q~--~ai~~l---~~g~~vlv~apTGsGKTl~~~l~i~ 113 (931)
|..|.. .|...+ .+++.++++|.+|||||..+-..+-
T Consensus 67 PHif~iA~~Ay~~l~~~~~~QsIiisGeSGsGKTe~~k~il~ 108 (684)
T d1lkxa_ 67 PHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQ 108 (684)
T ss_dssp CCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHcCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 555533 555555 3457899999999999998754433
No 237
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}
Probab=26.16 E-value=19 Score=40.03 Aligned_cols=37 Identities=27% Similarity=0.423 Sum_probs=25.1
Q ss_pred CCCHHH--HHHHHHH---hcCCcEEEEcCCCCCcHHHHHHHH
Q 002359 76 ELDPFQ--RVSVACL---ERNESVLVSAHTSAGKTAVAEYAI 112 (931)
Q Consensus 76 ~l~~~Q--~~ai~~l---~~g~~vlv~apTGsGKTl~~~l~i 112 (931)
+|..|. ..|...+ .+++.++++|.+|||||...-+.+
T Consensus 105 ~PHifaiA~~Ay~~m~~~~~nQsIiisGeSGaGKTe~~k~il 146 (712)
T d1d0xa2 105 APHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 146 (712)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhCCCceEEEeCCCCCCHHHHHHHHH
Confidence 355543 2444444 346789999999999998865443
No 238
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=26.08 E-value=1.7e+02 Score=27.00 Aligned_cols=105 Identities=13% Similarity=0.084 Sum_probs=69.2
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHHHHhcC--CeEEEecccccCCCCCeeEecHH
Q 002359 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK--DVGLMTGDVTLSPNASCLVMTTE 167 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~--~vg~~tGd~~~~~~~~IlV~Tpe 167 (931)
+..+-++-+.||||= + ...++.++..+.++.-+=...+.+....+.+.+++. ++.+..+|..-..
T Consensus 84 ~pG~rVLEiG~GsG~-l--t~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~---------- 150 (250)
T d1yb2a1 84 RPGMDILEVGVGSGN-M--SSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI---------- 150 (250)
T ss_dssp CTTCEEEEECCTTSH-H--HHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC----------
T ss_pred CCcCEEEEeeeeCcH-H--HHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc----------
Confidence 334678889999992 2 244556666777888877777777777777777654 7777777753210
Q ss_pred HHHHHHhcCccccCcccEEEEeccccCCCCCchHHHHHHHHhcCCCceEEEeccCCC
Q 002359 168 ILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMS 224 (931)
Q Consensus 168 ~L~~~l~~~~~~l~~l~~vViDEaH~l~~~~~g~~~~~ii~~l~~~~q~v~lSAT~~ 224 (931)
.-..++.|++| +.+. -..+..+...|.+.-.+++.++|+.
T Consensus 151 -----------~~~~fD~V~ld----~p~p--~~~l~~~~~~LKpGG~lv~~~P~i~ 190 (250)
T d1yb2a1 151 -----------SDQMYDAVIAD----IPDP--WNHVQKIASMMKPGSVATFYLPNFD 190 (250)
T ss_dssp -----------CSCCEEEEEEC----CSCG--GGSHHHHHHTEEEEEEEEEEESSHH
T ss_pred -----------ccceeeeeeec----CCch--HHHHHHHHHhcCCCceEEEEeCCcC
Confidence 01246777776 3332 3446677778887888888888864
No 239
>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=25.92 E-value=82 Score=29.29 Aligned_cols=84 Identities=19% Similarity=0.166 Sum_probs=51.9
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHH-hCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHH
Q 002359 90 RNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l-~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (931)
+++.+||.+. ++-+- .++...+ +.|.+|+++.-..+-+.+..++++...+++-.+..|. +.++.
T Consensus 9 enKvalITGa---s~GIG--~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dv----------t~~~~ 73 (251)
T d2c07a1 9 ENKVALVTGA---GRGIG--REIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDV----------SKKEE 73 (251)
T ss_dssp SSCEEEEEST---TSHHH--HHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCT----------TCHHH
T ss_pred CCCEEEEeCC---CCHHH--HHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccC----------CCHHH
Confidence 5677778554 44333 2333333 6688998888888888888888877766666666664 34555
Q ss_pred HHHHHhcCccccCcccEEEE
Q 002359 169 LRGMLYRGSEVLKEVAWVIF 188 (931)
Q Consensus 169 L~~~l~~~~~~l~~l~~vVi 188 (931)
+..++..-...+..++.+|-
T Consensus 74 v~~~~~~~~~~~g~iDilvn 93 (251)
T d2c07a1 74 ISEVINKILTEHKNVDILVN 93 (251)
T ss_dssp HHHHHHHHHHHCSCCCEEEE
T ss_pred HHHHHHHHHHhcCCceeeee
Confidence 55554433333456666663
No 240
>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=25.80 E-value=1.4e+02 Score=24.81 Aligned_cols=62 Identities=11% Similarity=0.004 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhhcCcccCCChhHHhHHHHhh
Q 002359 313 GGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLK 392 (931)
Q Consensus 313 ~~~~~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~ 392 (931)
-.+.....++.|.+.+-...|+=-.+...+..+++.|
T Consensus 22 lr~~a~~~I~~L~~~Gi~v~ilTGD~~~~a~~ia~~l------------------------------------------- 58 (135)
T d2b8ea1 22 LKESAKPAVQELKRMGIKVGMITGDNWRSAEAISREL------------------------------------------- 58 (135)
T ss_dssp BCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHH-------------------------------------------
T ss_pred CCccHHHHHHHHHHcCCEEEEEcCcchhhhhHHHhhh-------------------------------------------
Confidence 3456777888888766544444444666777777766
Q ss_pred ccceeccCCCCHHHHHHHHHHHhcCC
Q 002359 393 RGIAVHHSGLLPVIKELVELLFQEGL 418 (931)
Q Consensus 393 ~gi~~~hg~l~~~~R~~v~~~F~~g~ 418 (931)
|+..+|++++|.++....+.++.|.
T Consensus 59 -gI~~v~~~~~p~~k~~~v~~~q~~~ 83 (135)
T d2b8ea1 59 -NLDLVIAEVLPHQKSEEVKKLQAKE 83 (135)
T ss_dssp -TCSEEECSCCHHHHHHHHHHHTTTS
T ss_pred -hhhhhccccchhHHHHHHHHHHcCC
Confidence 2445789999999999999998875
No 241
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}
Probab=25.66 E-value=27 Score=34.65 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=12.5
Q ss_pred EEEEcCCCCCcHHHH
Q 002359 94 VLVSAHTSAGKTAVA 108 (931)
Q Consensus 94 vlv~apTGsGKTl~~ 108 (931)
+=+.+|+|+|||...
T Consensus 57 IgitG~pGaGKSTLi 71 (327)
T d2p67a1 57 LGVTGTPGAGKSTFL 71 (327)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEeeCCCCCCHHHHH
Confidence 567899999999754
No 242
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus [TaxId: 2261]}
Probab=25.27 E-value=13 Score=36.69 Aligned_cols=16 Identities=13% Similarity=0.302 Sum_probs=13.5
Q ss_pred cEEEEcCCCCCcHHHH
Q 002359 93 SVLVSAHTSAGKTAVA 108 (931)
Q Consensus 93 ~vlv~apTGsGKTl~~ 108 (931)
-.++.||+|||||.+.
T Consensus 28 lnvi~G~NGsGKS~il 43 (329)
T g1xew.1 28 FTAIVGANGSGKSNIG 43 (329)
T ss_dssp EEEEEECTTSSSHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3478999999999874
No 243
>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}
Probab=25.24 E-value=84 Score=29.37 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=48.1
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHH-HhCCCEEEEEcCc-hhhHHHHHHHHHHhcC-CeEEEecccccCCCCCeeEec
Q 002359 89 ERNESVLVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPL-KALSNQKYRELHQEFK-DVGLMTGDVTLSPNASCLVMT 165 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~-l~~~~rvl~l~P~-kaL~~Q~~~~l~~~~~-~vg~~tGd~~~~~~~~IlV~T 165 (931)
++|+.+|| ||+++-+-. ++... .+.|.+|+++.-. .....+...++.+..+ ++-.+..|. +.
T Consensus 2 L~gK~alI---TGas~GIG~--aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv----------~~ 66 (260)
T d1x1ta1 2 LKGKVAVV---TGSTSGIGL--GIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADL----------SK 66 (260)
T ss_dssp CTTCEEEE---TTCSSHHHH--HHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCT----------TS
T ss_pred CCcCEEEE---eCCCCHHHH--HHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCC----------CC
Confidence 56787787 666665543 33333 3668888887754 5667777777766654 555555554 34
Q ss_pred HHHHHHHHhcCccccCcccEEE
Q 002359 166 TEILRGMLYRGSEVLKEVAWVI 187 (931)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vV 187 (931)
++.+..++..-...+..++.+|
T Consensus 67 ~~~v~~~~~~~~~~~G~iDiLV 88 (260)
T d1x1ta1 67 GEAVRGLVDNAVRQMGRIDILV 88 (260)
T ss_dssp HHHHHHHHHHHHHHHSCCSEEE
T ss_pred HHHHHHHHHHHHHHhCCCcEEE
Confidence 5555444433222334455554
No 244
>d2b2na1 c.37.1.19 (A:26-333) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=25.14 E-value=80 Score=30.60 Aligned_cols=29 Identities=17% Similarity=0.094 Sum_probs=25.0
Q ss_pred hCCCEEEEEcCchhhHHHHHHHHHHhcCC
Q 002359 117 RDKQRVIYTSPLKALSNQKYRELHQEFKD 145 (931)
Q Consensus 117 ~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~ 145 (931)
+..+.+|+++|....+.+.+++++.+.+.
T Consensus 12 ~~~~p~lvv~~~~~~A~~l~~~L~~~~~~ 40 (308)
T d2b2na1 12 RHAGPVVLIAPDMQNALRLHDEISQFTDQ 40 (308)
T ss_dssp HCSSCEEEEESSHHHHHHHHHHHHTTCSS
T ss_pred hhCCCEEEEcCCHHHHHHHHHHHHhcCCC
Confidence 45778999999999999999999877663
No 245
>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}
Probab=24.98 E-value=1.1e+02 Score=28.39 Aligned_cols=82 Identities=20% Similarity=0.103 Sum_probs=50.3
Q ss_pred CCcEEEEcCCCCCcHHHHHHHHHHH-HhCCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecHHHH
Q 002359 91 NESVLVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEIL 169 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~~l~i~~~-l~~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L 169 (931)
|+-+|| ||+++-+-. ++... .+.|.+|+++.-..+-..+..+++++..+++-.+..|.+ .++.+
T Consensus 2 gKValI---TGas~GIG~--aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs----------~~~~v 66 (257)
T d2rhca1 2 SEVALV---TGATSGIGL--EIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVR----------SVPEI 66 (257)
T ss_dssp CCEEEE---ESCSSHHHH--HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT----------CHHHH
T ss_pred CCEEEE---eCCCCHHHH--HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecC----------CHHHH
Confidence 455566 445554442 33333 367889999998888888888999887767766776653 34444
Q ss_pred HHHHhcCccccCcccEEE
Q 002359 170 RGMLYRGSEVLKEVAWVI 187 (931)
Q Consensus 170 ~~~l~~~~~~l~~l~~vV 187 (931)
..++..-...+..++.+|
T Consensus 67 ~~~~~~~~~~~g~iDilV 84 (257)
T d2rhca1 67 EALVAAVVERYGPVDVLV 84 (257)
T ss_dssp HHHHHHHHHHTCSCSEEE
T ss_pred HHHHHHHHHHhCCCCEEE
Confidence 444433323344555555
No 246
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}
Probab=24.62 E-value=21 Score=39.89 Aligned_cols=36 Identities=39% Similarity=0.567 Sum_probs=25.1
Q ss_pred CCHH--HHHHHHHH---hcCCcEEEEcCCCCCcHHHHHHHH
Q 002359 77 LDPF--QRVSVACL---ERNESVLVSAHTSAGKTAVAEYAI 112 (931)
Q Consensus 77 l~~~--Q~~ai~~l---~~g~~vlv~apTGsGKTl~~~l~i 112 (931)
|..| =..|...+ .+++.++++|.+|||||.+.-..+
T Consensus 75 PHif~vA~~Ay~~l~~~~~~Q~IiisGeSGsGKTe~~k~il 115 (730)
T d1w7ja2 75 PHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAM 115 (730)
T ss_dssp CCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 4444 34455554 446789999999999999865543
No 247
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=24.50 E-value=20 Score=40.39 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=25.1
Q ss_pred CCCHHH--HHHHHHH---hcCCcEEEEcCCCCCcHHHHHHHH
Q 002359 76 ELDPFQ--RVSVACL---ERNESVLVSAHTSAGKTAVAEYAI 112 (931)
Q Consensus 76 ~l~~~Q--~~ai~~l---~~g~~vlv~apTGsGKTl~~~l~i 112 (931)
+|..|- ..|...+ .+++.++++|.+|||||..+-..+
T Consensus 103 pPHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~K~il 144 (794)
T d2mysa2 103 PPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVI 144 (794)
T ss_dssp CSCHHHHHHHHHHHHHHHTCCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 354443 3455554 345689999999999998765444
No 248
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}
Probab=24.28 E-value=12 Score=35.25 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=17.7
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002359 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
.+|+-+-+.+|.|+|||..+
T Consensus 23 ~~Gei~~iiG~nGaGKSTLl 42 (231)
T d1l7vc_ 23 RAGEILHLVGPNGAGKSTLL 42 (231)
T ss_dssp ETTCEEECBCCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 67888999999999999863
No 249
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.11 E-value=14 Score=37.86 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=12.9
Q ss_pred EEEEcCCCCCcHHHH
Q 002359 94 VLVSAHTSAGKTAVA 108 (931)
Q Consensus 94 vlv~apTGsGKTl~~ 108 (931)
.++.||+|||||.+.
T Consensus 28 ~~i~G~NGsGKS~il 42 (427)
T d1w1wa_ 28 TSIIGPNGSGKSNMM 42 (427)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 478899999999874
No 250
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.09 E-value=24 Score=32.71 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=20.6
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcC
Q 002359 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P 127 (931)
.++++.-|||||... -.++.. .++.++.+++.
T Consensus 6 ~iitGFLGaGKTTll-~~lL~~-~~~~riaVI~N 37 (222)
T d1nija1 6 TLLTGFLGAGKTTLL-RHILNE-QHGYKIAVIEN 37 (222)
T ss_dssp EEEEESSSSSCHHHH-HHHHHS-CCCCCEEEECS
T ss_pred EEEeeCCCCCHHHHH-HHHHhc-CCCCcEEEEEe
Confidence 578999999999842 222222 34567766653
No 251
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}
Probab=24.08 E-value=27 Score=34.59 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=11.9
Q ss_pred EEEEcCCCCCcHHH
Q 002359 94 VLVSAHTSAGKTAV 107 (931)
Q Consensus 94 vlv~apTGsGKTl~ 107 (931)
+=+.+|.|+|||..
T Consensus 54 igitG~pGaGKSTl 67 (323)
T d2qm8a1 54 VGITGVPGVGKSTT 67 (323)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EeeeCCCCCCHHHH
Confidence 55799999999975
No 252
>d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=24.00 E-value=31 Score=25.14 Aligned_cols=49 Identities=8% Similarity=0.099 Sum_probs=39.6
Q ss_pred CCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHH
Q 002359 864 KGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAAS 916 (931)
Q Consensus 864 ~G~~f~~i~~~t~~~EG~ivR~~rRl~ell~qi~~aa~~iG~~~L~~k~~~a~ 916 (931)
.|.|..+|++.+++..|+|-+.+.=-++|+..+..-. -.++...+++|+
T Consensus 19 ~~~ti~~Ia~~agvs~~~~Y~~F~~K~~L~~~~~~~~----~~~~~~~~~~al 67 (69)
T d2i10a1 19 EGTSITDLTKALGINPPSLYAAFGSKRDLFEKTLDRY----MCERTLQLEEAM 67 (69)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHH----CSCCHHHHHHHH
T ss_pred ccCCHHHHHHHhCCChhHHHHHCcCHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 6799999999999999999999999999999986543 234555555554
No 253
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=23.83 E-value=22 Score=39.49 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=22.3
Q ss_pred HHHHHHH---hcCCcEEEEcCCCCCcHHHHHHHH
Q 002359 82 RVSVACL---ERNESVLVSAHTSAGKTAVAEYAI 112 (931)
Q Consensus 82 ~~ai~~l---~~g~~vlv~apTGsGKTl~~~l~i 112 (931)
..|...+ .+++.++++|.+|||||...-+.+
T Consensus 79 ~~Ay~~m~~~~~~Q~IiisGeSGaGKTe~~k~il 112 (710)
T d1br2a2 79 DTAYRSMLQDREDQSILCTGESGAGKTENTKKVI 112 (710)
T ss_dssp HHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3455555 345789999999999998864433
No 254
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}
Probab=23.78 E-value=1.7e+02 Score=23.29 Aligned_cols=82 Identities=15% Similarity=0.062 Sum_probs=50.6
Q ss_pred CCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCCCCCee-E-ecHHHHHHHHhcCccccCcccEEEEeccccCCC
Q 002359 119 KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCL-V-MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (931)
Q Consensus 119 ~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~Il-V-~Tpe~L~~~l~~~~~~l~~l~~vViDEaH~l~~ 196 (931)
|+|+|++=-..........-+.... ..++ + .+.+...+++.. ..+++||+| . .|.+
T Consensus 1 GkrILivDD~~~~~~~l~~~L~~~g---------------~~v~~~a~~~~~al~~~~~-----~~~dliilD-~-~mp~ 58 (118)
T d1u0sy_ 1 GKRVLIVDDAAFMRMMLKDIITKAG---------------YEVAGEATNGREAVEKYKE-----LKPDIVTMD-I-TMPE 58 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTT---------------CEEEEEESSHHHHHHHHHH-----HCCSEEEEE-C-SCGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcC---------------CceEEEECCHHHHHHHHHh-----ccCCEEEEe-c-CCCC
Confidence 5788888777666666555555432 2222 3 244555555543 257899999 3 4444
Q ss_pred CCchHHHHHHHHhcCCCceEEEeccCC
Q 002359 197 RERGVVWEESIIFLPPAIKMVFLSATM 223 (931)
Q Consensus 197 ~~~g~~~~~ii~~l~~~~q~v~lSAT~ 223 (931)
. -|..+-.-+....++.+++++|+.-
T Consensus 59 ~-~G~e~~~~ir~~~~~~pvi~ls~~~ 84 (118)
T d1u0sy_ 59 M-NGIDAIKEIMKIDPNAKIIVCSAMG 84 (118)
T ss_dssp G-CHHHHHHHHHHHCTTCCEEEEECTT
T ss_pred C-CHHHHHHHHHHhCCCCcEEEEEccC
Confidence 3 3655555556666788999999874
No 255
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.14 E-value=15 Score=34.20 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCCcHHHH
Q 002359 91 NESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 91 g~~vlv~apTGsGKTl~~ 108 (931)
.+-+++.|+.|||||..+
T Consensus 2 ~k~I~ieG~dGsGKST~~ 19 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFV 19 (241)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 356889999999999975
No 256
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}
Probab=23.10 E-value=33 Score=32.48 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=21.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEE
Q 002359 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l 125 (931)
+.|++.=|.|||.++.--.......|.+|+++
T Consensus 4 Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllI 35 (269)
T d1cp2a_ 4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEECCCcCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 45678889999998754333333557777654
No 257
>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Probab=22.46 E-value=1.2e+02 Score=28.35 Aligned_cols=84 Identities=14% Similarity=0.124 Sum_probs=49.9
Q ss_pred hcCCcEEEEcCCCCCcHHHHHHHHHHH-HhCCCEEEEEcC-chhhHHHHHHHHHHhcCCeEEEecccccCCCCCeeEecH
Q 002359 89 ERNESVLVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSP-LKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT 166 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~l~i~~~-l~~~~rvl~l~P-~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp 166 (931)
++|+.+||.+.+ +-+- .++.+. ...|.+|+++.- ..+.+.+..+.+++...++..+..|. +.+
T Consensus 16 L~gK~~lITGas---~GIG--~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~----------~~~ 80 (272)
T d1g0oa_ 16 LEGKVALVTGAG---RGIG--REMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANV----------GVV 80 (272)
T ss_dssp CTTCEEEETTTT---SHHH--HHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCT----------TCH
T ss_pred CCCCEEEEeCCC---CHHH--HHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCC----------CCH
Confidence 678888885543 3332 233333 356888877754 46788888888888877777776664 345
Q ss_pred HHHHHHHhcCccccCcccEEE
Q 002359 167 EILRGMLYRGSEVLKEVAWVI 187 (931)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vV 187 (931)
+.+..++..-...+..++.+|
T Consensus 81 ~~v~~~~~~~~~~~g~idilV 101 (272)
T d1g0oa_ 81 EDIVRMFEEAVKIFGKLDIVC 101 (272)
T ss_dssp HHHHHHHHHHHHHHSCCCEEE
T ss_pred HHHHHHHHHHHHHhCCCCccc
Confidence 555554433322334445444
No 258
>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}
Probab=22.39 E-value=29 Score=31.12 Aligned_cols=42 Identities=24% Similarity=0.399 Sum_probs=27.0
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCchhhHHHHHHHH
Q 002359 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYREL 139 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~kaL~~Q~~~~l 139 (931)
+||.++..||||--|+- ....+.+++|++..++.=..+.+++
T Consensus 2 iLVtGGarSGKS~~AE~----l~~~~~~~~YiAT~~~~D~em~~RI 43 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEA----LIGDAPQVLYIATSQILDDEMAARI 43 (180)
T ss_dssp EEEEECTTSSHHHHHHH----HHCSCSSEEEEECCCC------CHH
T ss_pred EEEECCCCccHHHHHHH----HHhcCCCcEEEEccCCCCHHHHHHH
Confidence 68999999999986653 2355778999998766544444333
No 259
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=21.94 E-value=58 Score=31.43 Aligned_cols=52 Identities=13% Similarity=0.048 Sum_probs=39.8
Q ss_pred CCCEEEEEcCchhhHHHHHHHHHHhcCCeEEEecccccCC---CCCeeEecHHHH
Q 002359 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSP---NASCLVMTTEIL 169 (931)
Q Consensus 118 ~~~rvl~l~P~kaL~~Q~~~~l~~~~~~vg~~tGd~~~~~---~~~IlV~Tpe~L 169 (931)
++.++||.++++.-+++.+..|++..-++..++|+.+... ..++.+...+.+
T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aL 89 (299)
T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDAL 89 (299)
T ss_dssp HSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC
T ss_pred cCCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHH
Confidence 4778999999999999999999988778888998766432 245555554443
No 260
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=21.93 E-value=19 Score=34.34 Aligned_cols=20 Identities=15% Similarity=0.423 Sum_probs=17.2
Q ss_pred hcCCcEEEEcCCCCCcHHHH
Q 002359 89 ERNESVLVSAHTSAGKTAVA 108 (931)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (931)
..|+-+-+.+|.|||||..+
T Consensus 28 ~~Gei~~liG~nGaGKSTLl 47 (254)
T d1g6ha_ 28 NKGDVTLIIGPNGSGKSTLI 47 (254)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHH
Confidence 56888899999999999763
No 261
>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=21.59 E-value=28 Score=28.63 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=29.2
Q ss_pred HHHHHHHHHHcCCCcEEEEecCHHHHHHHHHHhccCCCC
Q 002359 317 IFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFN 355 (931)
Q Consensus 317 ~~~ll~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~ 355 (931)
+..|...+.+ ...++|+.|.|....+.+.+.|...++.
T Consensus 23 ~~~L~~~i~~-~~~~Vli~a~s~g~~erl~e~L~~~~i~ 60 (117)
T d2eyqa2 23 LDALRKFLET-FDGPVVFSVESEGRREALGELLARIKIA 60 (117)
T ss_dssp THHHHHHHTT-CCSCCCEEESSHHHHHHHHHHHGGGTCC
T ss_pred HHHHHHHHHh-CCCeEEEEECCccHHHHHHHHHHHcCCC
Confidence 4455555543 4568999999999999999999887765
No 262
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=21.48 E-value=23 Score=39.88 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=25.4
Q ss_pred CCCHHH--HHHHHHH---hcCCcEEEEcCCCCCcHHHHHHHHH
Q 002359 76 ELDPFQ--RVSVACL---ERNESVLVSAHTSAGKTAVAEYAIA 113 (931)
Q Consensus 76 ~l~~~Q--~~ai~~l---~~g~~vlv~apTGsGKTl~~~l~i~ 113 (931)
+|..|. ..|+..+ .+++.++++|.+|||||...-+.+-
T Consensus 101 ~PHiyavA~~Ay~~m~~~~~nQ~IiisGESGaGKTe~~K~il~ 143 (789)
T d1kk8a2 101 PPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIM 143 (789)
T ss_dssp CCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 354443 3455544 3457899999999999987654443
No 263
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=21.38 E-value=53 Score=26.57 Aligned_cols=38 Identities=8% Similarity=0.155 Sum_probs=30.7
Q ss_pred cHHHHHHHhhCC-CCHHHHHhhcCCCcchHHHHHHHHHH
Q 002359 854 FLMDVIYCWSKG-ATFAEVIQMTDIFEGSIIRSARRLDE 891 (931)
Q Consensus 854 ~l~~~v~~Wa~G-~~f~~i~~~t~~~EG~ivR~~rRl~e 891 (931)
.++..++.+-.| .+..+|++...+.-+++-|.++||++
T Consensus 37 ~vL~~l~~~~~~~~t~~~la~~l~~~~~tvs~~i~~Le~ 75 (115)
T d2frha1 37 AVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQ 75 (115)
T ss_dssp HHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHCCCHhHHHHHHHHHHh
Confidence 344455555554 69999999999999999999999975
No 264
>d2c0ga1 a.71.1.1 (A:1146-1251) Windbeutel, C-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=21.35 E-value=42 Score=27.11 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhcC
Q 002359 716 VNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLG 750 (931)
Q Consensus 716 l~~~i~~l~~~~~~~~~~~~~~e~~~~~~vL~~lg 750 (931)
+..|+++|.+-+...-+..-.+||..+++||+.+.
T Consensus 64 v~~E~~RL~~ll~g~~s~~K~del~~r~NIL~~F~ 98 (106)
T d2c0ga1 64 LEEETKRLLRLKAGKVTEAKKEELLRKLNILEVFR 98 (106)
T ss_dssp HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 56788888888876444456789999999999874
No 265
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}
Probab=21.26 E-value=37 Score=32.52 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=20.9
Q ss_pred EEEEcCCCCCcHHHHHH-HHHHHHhCCCEEEEE
Q 002359 94 VLVSAHTSAGKTAVAEY-AIAMAFRDKQRVIYT 125 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l-~i~~~l~~~~rvl~l 125 (931)
+.+++.=|.|||.++.- +...+ ..|.+|+++
T Consensus 5 IaisgKGGVGKTT~a~NLA~~LA-~~G~rVLlI 36 (289)
T d2afhe1 5 CAIYGKGGIGKSTTTQNLVAALA-EMGKKVMIV 36 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-HCCCCEEEE
Confidence 45677889999997763 33333 457777654
No 266
>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}
Probab=21.08 E-value=27 Score=28.49 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=22.7
Q ss_pred CCCcEEEEecCHHHHHHHHHHhccCCCCC
Q 002359 328 KFQPVIVFSFSRRECEQHAMSMSKLDFNT 356 (931)
Q Consensus 328 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~ 356 (931)
...++|+||.|=..+-..+..|..+|+..
T Consensus 81 ~~~~ii~yC~sG~~A~~~~~~L~~lG~~~ 109 (120)
T d1urha2 81 YDKPIIVSCGSGVTAAVVLLALATLDVPN 109 (120)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHHTTCSS
T ss_pred ccCceEEEccchhHHHHHHHHHHHcCCCC
Confidence 45689999998777777777787778764
No 267
>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]}
Probab=21.04 E-value=17 Score=31.03 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=24.7
Q ss_pred CCCcEEEEecCHHHHHHHHHHhccCCCCC
Q 002359 328 KFQPVIVFSFSRRECEQHAMSMSKLDFNT 356 (931)
Q Consensus 328 ~~~~~IVF~~sr~~~~~la~~L~~~~~~~ 356 (931)
...++|+||.+-..+...+..|...|+..
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~n 109 (137)
T d1qxna_ 81 PEKPVVVFCKTAARAALAGKTLREYGFKT 109 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSC
T ss_pred cccceeeeecccchHHHHHHHHHHcCCCc
Confidence 45689999999888999999998888864
No 268
>d1g7da_ a.71.1.1 (A:) Endoplasmic reticulum protein ERP29, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.94 E-value=40 Score=27.23 Aligned_cols=35 Identities=11% Similarity=0.255 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhcC
Q 002359 716 VNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLG 750 (931)
Q Consensus 716 l~~~i~~l~~~~~~~~~~~~~~e~~~~~~vL~~lg 750 (931)
+..|+++|.+-++..-+..-.+||..|++||+.+-
T Consensus 63 ~~~E~~RL~~il~g~vs~~K~del~~r~NIL~sF~ 97 (106)
T d1g7da_ 63 PASELARISKLIENKMSEGKKEELQRSLNILTAFR 97 (106)
T ss_dssp HHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 56788888888876444456789999999999983
No 269
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}
Probab=20.63 E-value=5.8 Score=35.86 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=14.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHH
Q 002359 94 VLVSAHTSAGKTAVAEYAIAMAF 116 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~i~~~l 116 (931)
.++.||+|||||.+. -||...+
T Consensus 27 tvi~G~NGsGKStil-~Ai~~~L 48 (222)
T d1qhla_ 27 TTLSGGNGAGKSTTM-AAFVTAL 48 (222)
T ss_dssp HHHHSCCSHHHHHHH-HHHHHHH
T ss_pred EEEECCCCCCHHHHH-HHHHHHh
Confidence 456799999999874 3443333
No 270
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=20.59 E-value=19 Score=26.66 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=41.6
Q ss_pred hCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHH
Q 002359 863 SKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAAS 916 (931)
Q Consensus 863 a~G~~f~~i~~~t~~~EG~ivR~~rRl~ell~qi~~aa~~iG~~~L~~k~~~a~ 916 (931)
..|.|+.+|++..++..|+|=+-+.=-++|+..+..-. -..+.+++.++.
T Consensus 21 ~~~~t~~~Ia~~agvs~~slY~yF~~k~~L~~~~~~~~----~~~~~~~l~~a~ 70 (72)
T d1zk8a1 21 VQEVTLASLAQTLGVRSPSLYNHVKGLQDVRKNLGIYG----IKKLHNRLEEAA 70 (72)
T ss_dssp GGGCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred CCcccHHHHHHHhCCCHHHHHHHCcCHHHHHHHHHHHH----HHHHHHHHHHHc
Confidence 36799999999999999999999999999999987654 356666666654
No 271
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=20.40 E-value=21 Score=33.65 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=13.1
Q ss_pred CcEEEEcCCCCCcHHH
Q 002359 92 ESVLVSAHTSAGKTAV 107 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~ 107 (931)
.-+.+.+|.|||||..
T Consensus 25 e~~~liGpnGaGKSTl 40 (240)
T d2onka1 25 DYCVLLGPTGAGKSVF 40 (240)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred EEEEEECCCCChHHHH
Confidence 4456799999999985
No 272
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}
Probab=20.35 E-value=21 Score=33.24 Aligned_cols=18 Identities=22% Similarity=0.527 Sum_probs=14.7
Q ss_pred EEEEcCCCCCcHHHHHHH
Q 002359 94 VLVSAHTSAGKTAVAEYA 111 (931)
Q Consensus 94 vlv~apTGsGKTl~~~l~ 111 (931)
+-++|+.|||||+++-+-
T Consensus 4 IgiTG~igSGKsTva~~l 21 (241)
T d1deka_ 4 IFLSGVKRSGKDTTADFI 21 (241)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 567899999999987553
No 273
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=20.27 E-value=32 Score=25.19 Aligned_cols=37 Identities=11% Similarity=0.216 Sum_probs=33.5
Q ss_pred CCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhh
Q 002359 864 KGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAA 900 (931)
Q Consensus 864 ~G~~f~~i~~~t~~~EG~ivR~~rRl~ell~qi~~aa 900 (931)
.+.|..+|++.+++..|+|-+.+.=-++|+..+..-.
T Consensus 20 ~~~ti~~Ia~~agvs~~~~y~~F~~K~~L~~~~~~~~ 56 (72)
T d1vi0a1 20 HQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEK 56 (72)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHCcCHHHHHHHCcCHHHHHHHHHHHH
Confidence 5689999999999999999999999999999987554
No 274
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.21 E-value=51 Score=30.00 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=23.7
Q ss_pred cCCcEEEEcCCCCCcHHHHHHHHHHHHhCCCEEEEEcCc
Q 002359 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL 128 (931)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~l~i~~~l~~~~rvl~l~P~ 128 (931)
+|.=+.+.|+-|||||...-. +...+.... .++..|.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~-L~~~L~~~~-~~~~~p~ 38 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNI-LYKKLQPNC-KLLKFPE 38 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHH-HHHHTTTSE-EEEESSC
T ss_pred CeEEEEEECCCCCcHHHHHHH-HHHHHHhCC-EEEEECC
Confidence 466788999999999988643 334444333 3444453
No 275
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=20.18 E-value=30 Score=32.21 Aligned_cols=28 Identities=7% Similarity=0.119 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCCCcHHH
Q 002359 80 FQRVSVACLERNESVLVSAHTSAGKTAV 107 (931)
Q Consensus 80 ~Q~~ai~~l~~g~~vlv~apTGsGKTl~ 107 (931)
...+.+..+.+|+..++.+++|.|||..
T Consensus 84 ~g~~~L~~~l~~kt~~~~G~SGVGKSTL 111 (225)
T d1u0la2 84 MGIEELKEYLKGKISTMAGLSGVGKSSL 111 (225)
T ss_dssp TTHHHHHHHHSSSEEEEECSTTSSHHHH
T ss_pred hhHhhHHHHhcCCeEEEECCCCCCHHHH
Confidence 3455666667899999999999999974
No 276
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}
Probab=20.17 E-value=24 Score=34.03 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=18.2
Q ss_pred CcEEEEcCCCCCcHHHHHHHHHH
Q 002359 92 ESVLVSAHTSAGKTAVAEYAIAM 114 (931)
Q Consensus 92 ~~vlv~apTGsGKTl~~~l~i~~ 114 (931)
+|+.+.||.|+|||...+-.+..
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll~~ 29 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERILYY 29 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 68999999999999876544443
No 277
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=20.13 E-value=56 Score=23.70 Aligned_cols=36 Identities=8% Similarity=0.271 Sum_probs=33.0
Q ss_pred CCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHh
Q 002359 864 KGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAA 899 (931)
Q Consensus 864 ~G~~f~~i~~~t~~~EG~ivR~~rRl~ell~qi~~a 899 (931)
.|.|+.+|++.+++..|+|-+-+.=-++|+..+..-
T Consensus 20 ~~~s~~~Ia~~agvs~~~~y~~F~~K~~L~~~~~~~ 55 (71)
T d1jt6a1 20 NATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNI 55 (71)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHSSHHHHHHHHHHH
T ss_pred cccCHHHHHHHHCcCHhHHHHHCcCHHHHHHHHHHH
Confidence 579999999999999999999999999999987654
No 278
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=20.02 E-value=62 Score=25.98 Aligned_cols=40 Identities=10% Similarity=0.263 Sum_probs=34.4
Q ss_pred HHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHH
Q 002359 858 VIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLR 897 (931)
Q Consensus 858 ~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ell~qi~ 897 (931)
++..+-.|.|..+|.+..++++|.+=..+.|--..|++..
T Consensus 25 ~~L~y~~~ls~~EIA~~lgiS~~aV~~~l~RA~~~L~~~e 64 (106)
T d1s7oa_ 25 IELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKILETYE 64 (106)
T ss_dssp HHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 3444689999999999999999999999999888888753
Done!