BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002360
(931 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 183/679 (26%), Positives = 275/679 (40%), Gaps = 60/679 (8%)
Query: 218 SSLTTLDLSGNQFQGQIPS--RLGNLTSLKHLDLYSN--QFNSAVLGWLSKLNDLEVLSL 273
+SLT+LDLS N G + + LG+ + LK L++ SN F V G L KLN LEVL L
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 155
Query: 274 EDNRLQGD--ISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQD 331
N + G + + D ++ L +S N ++ G + S + L ++S S
Sbjct: 156 SANSISGANVVGWVLSDGCGELKHLAISGN-KISGDVDVS--RCVNLEFLDVSSNNFSTG 212
Query: 332 ISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQ 391
I C A L+ L + G ++ G + + L L +S+NQ G IP
Sbjct: 213 IP----FLGDCSA--LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--P 264
Query: 392 MANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRS 451
+ +L+ L L+ NK G + + L + N + P + L L L S
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 452 CHLGPRFPLWLQLQ-KKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKF 510
+ P+ L+ + L LD+S S ++P + N L++S N F
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN-------F 377
Query: 511 DSPSMP-LIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIP 569
P +P L P L ++ L NN +G I + N S+ + L LS N+ S IP
Sbjct: 378 SGPILPNLCQNPKNTLQELY-LQNNGFTGKIPPTL---SNCSELVS-LHLSFNYLSGTIP 432
Query: 570 DCWMNWPRLRTLNLGNNNFTGSLPMSIGXXXXXXXXXXXXXXXXGVIPTSFKNFSILEAL 629
+ +LR L L N G +P + G IP+ N + L +
Sbjct: 433 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 492
Query: 630 DVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTI 689
+ N L G IP WIG R L IL L +N F G+ P +L SL LD+ N GTI
Sbjct: 493 SLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 690 PRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTS--LVMKGFLVEYNSILNLVRSID 747
P + S A+ + G K L +G E + L+ +
Sbjct: 552 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 611
Query: 748 ISMNNFSGEIPVEVTNLQGLQSLNLSHNLF------------------------TGRIPD 783
I+ + G N + L++S+N+ +G IPD
Sbjct: 612 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 671
Query: 784 NIGVMRSIESLDFSANQLSGQIPQSMXXXXXXXXXXXXXXXXXGEIPSSTQLQSFDASSF 843
+G +R + LD S+N+L G+IPQ+M G IP Q ++F + F
Sbjct: 672 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 731
Query: 844 AGND-LCGAPLSSCTEKNA 861
N LCG PL C NA
Sbjct: 732 LNNPGLCGYPLPRCDPSNA 750
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 154/585 (26%), Positives = 243/585 (41%), Gaps = 134/585 (22%)
Query: 249 LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSL-GLDNLTSIQKLLLSWND-ELGG 306
L ++ N +V G+ + L L L N L G +++L L + + ++ L +S N + G
Sbjct: 81 LSNSHINGSVSGFKCSAS-LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 307 KIPTSFGKLCKLTSFSMASTKLSQDISEILG--IFSGCVAYELESLYLRGCQIFGHLTNQ 364
K+ KL L +++ +S + ++G + GC EL+ L + G +I G +
Sbjct: 140 KVSGGL-KLNSLEVLDLSANSISG--ANVVGWVLSDGC--GELKHLAISGNKISGDV--D 192
Query: 365 LGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSE-IHFVNLTKLVSF 423
+ + L FL +S+N IP LG + L+ LD+S NKL+G S I KL++
Sbjct: 193 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 251
Query: 424 LANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIP 483
+N +GP PL L K L L ++ + + +IP
Sbjct: 252 SSNQ-------------------------FVGPIPPLPL---KSLQYLSLAENKFTGEIP 283
Query: 484 RAFWNSIFQYYYLNVSGNQIYGGVPKFD----------------SPSMPLIITPSLLLGS 527
+ L++SGN YG VP F S +P+ +
Sbjct: 284 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 343
Query: 528 IFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGI-PDCWMNWPR--LRTLNLG 584
+ DLS N SG + + N S ++ L LS+N+FS I P+ N P+ L+ L L
Sbjct: 344 VLDLSFNEFSGELPESL---TNLSASLLTLDLSSNNFSGPILPNLCQN-PKNTLQELYLQ 399
Query: 585 NNNFTGSLPMSIGXXXXXXXXXXXXXXXXGVIPTSFKNFSILEALDVGENELVGSIPTWI 644
NN FTG IP + N S L +L + N L G+IP+ +
Sbjct: 400 NNGFTGK------------------------IPPTLSNCSELVSLHLSFNYLSGTIPSSL 435
Query: 645 GERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADS 704
G S+L L L N G+ P +L + +L+ L + +N L G IP ++N + +
Sbjct: 436 GS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL----- 489
Query: 705 SDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNL 764
I +S N +GEIP + L
Sbjct: 490 ---------------------------------------NWISLSNNRLTGEIPKWIGRL 510
Query: 765 QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSM 809
+ L L LS+N F+G IP +G RS+ LD + N +G IP +M
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 153/559 (27%), Positives = 231/559 (41%), Gaps = 112/559 (20%)
Query: 114 LASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELH-AETISWLSGLSLLEH 172
++ VNL +L++S F+ IP LG+ S LQ+LD+SG + IS + L LL
Sbjct: 193 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 251
Query: 173 LYISFVNLSKASDSLLVINSLH--SLKELKLSFCELHHFPLLSSANFSSLTTLDLSG--- 227
FV L + SL SL E K + P S +LT LDLSG
Sbjct: 252 SSNQFVGPIPP----LPLKSLQYLSLAENKFT----GEIPDFLSGACDTLTGLDLSGNHF 303
Query: 228 ----------------------------------------------NQFQGQIPSRLGNL 241
N+F G++P L NL
Sbjct: 304 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 363
Query: 242 T-SLKHLDLYSNQFNSAVLGWLSK--LNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLL 298
+ SL LDL SN F+ +L L + N L+ L L++N G I L N + + L L
Sbjct: 364 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHL 422
Query: 299 SWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIF 358
S+N L G IP+S G L KL + L +I + L LE+L L +
Sbjct: 423 SFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-----MYVKTLETLILDFNDLT 476
Query: 359 GHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLT 418
G + + L LN++ LSNN++ G IP +G++ NL L LSNN +G + +
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI-PAELGDCR 535
Query: 419 KLVSFLANAN-------SLIF----KINPNWVPPFQLTVLE----LRSCH-LGPRFPLWL 462
L+ N N + +F KI N++ + ++ + CH G
Sbjct: 536 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 595
Query: 463 QLQKKLNDLDISSTR----ISDKIPRAFWNSIFQ----YYYLNVSGNQIYGGVPKFDSPS 514
++LN L STR I+ ++ + F +L++S N + G +PK + S
Sbjct: 596 IRSEQLNRL---STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-EIGS 651
Query: 515 MPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMN 574
MP + I +L +N +SGSI + + + L LS+N IP
Sbjct: 652 MPYLF--------ILNLGHNDISGSIPDEVGD----LRGLNILDLSSNKLDGRIPQAMSA 699
Query: 575 WPRLRTLNLGNNNFTGSLP 593
L ++L NNN +G +P
Sbjct: 700 LTMLTEIDLSNNNLSGPIP 718
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 159/398 (39%), Gaps = 64/398 (16%)
Query: 54 NFTGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSXXXXXXXXXXXXSGNDFQGIQIPKY 113
NF+G +L QNP + Q + GKI P+ S N G IP
Sbjct: 376 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT-IPSS 434
Query: 114 LASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHL 173
L SL LR L L G IP +L + L+ L L + +L E S LS + L
Sbjct: 435 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD--FNDLTGEIPSGLSNCTNLN-- 490
Query: 174 YISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQ 233
+IS N + I L +L LK LS N F G
Sbjct: 491 WISLSNNRLTGEIPKWIGRLENLAILK------------------------LSNNSFSGN 526
Query: 234 IPSRLGNLTSLKHLDLYSNQFNSAVLGWLSK---------LNDLEVLSLEDNRLQGDISS 284
IP+ LG+ SL LDL +N FN + + K + + ++++ ++ +
Sbjct: 527 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 586
Query: 285 LGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTS----------FSMASTKLSQDISE 334
G NL Q + + L + P C +TS F + + D+S
Sbjct: 587 AG--NLLEFQGIRSEQLNRLSTRNP------CNITSRVYGGHTSPTFDNNGSMMFLDMS- 637
Query: 335 ILGIFSGCVAYELES------LYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLS 388
+ SG + E+ S L L I G + +++G + LN L LS+N++DG IP +
Sbjct: 638 -YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 696
Query: 389 LGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLAN 426
+ + L +DLSNN L+G + E+ FL N
Sbjct: 697 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 734
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 183/679 (26%), Positives = 275/679 (40%), Gaps = 60/679 (8%)
Query: 218 SSLTTLDLSGNQFQGQIPS--RLGNLTSLKHLDLYSN--QFNSAVLGWLSKLNDLEVLSL 273
+SLT+LDLS N G + + LG+ + LK L++ SN F V G L KLN LEVL L
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 158
Query: 274 EDNRLQGD--ISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQD 331
N + G + + D ++ L +S N ++ G + S + L ++S S
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGN-KISGDVDVS--RCVNLEFLDVSSNNFSTG 215
Query: 332 ISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQ 391
I C A L+ L + G ++ G + + L L +S+NQ G IP
Sbjct: 216 IP----FLGDCSA--LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--P 267
Query: 392 MANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRS 451
+ +L+ L L+ NK G + + L + N + P + L L L S
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 452 CHLGPRFPLWLQLQ-KKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKF 510
+ P+ L+ + L LD+S S ++P + N L++S N F
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN-------F 380
Query: 511 DSPSMP-LIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIP 569
P +P L P L ++ L NN +G I + N S+ + L LS N+ S IP
Sbjct: 381 SGPILPNLCQNPKNTLQELY-LQNNGFTGKIPPTL---SNCSELVS-LHLSFNYLSGTIP 435
Query: 570 DCWMNWPRLRTLNLGNNNFTGSLPMSIGXXXXXXXXXXXXXXXXGVIPTSFKNFSILEAL 629
+ +LR L L N G +P + G IP+ N + L +
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495
Query: 630 DVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTI 689
+ N L G IP WIG R L IL L +N F G+ P +L SL LD+ N GTI
Sbjct: 496 SLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 690 PRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTS--LVMKGFLVEYNSILNLVRSID 747
P + S A+ + G K L +G E + L+ +
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614
Query: 748 ISMNNFSGEIPVEVTNLQGLQSLNLSHNLF------------------------TGRIPD 783
I+ + G N + L++S+N+ +G IPD
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674
Query: 784 NIGVMRSIESLDFSANQLSGQIPQSMXXXXXXXXXXXXXXXXXGEIPSSTQLQSFDASSF 843
+G +R + LD S+N+L G+IPQ+M G IP Q ++F + F
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 734
Query: 844 AGND-LCGAPLSSCTEKNA 861
N LCG PL C NA
Sbjct: 735 LNNPGLCGYPLPRCDPSNA 753
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 154/585 (26%), Positives = 243/585 (41%), Gaps = 134/585 (22%)
Query: 249 LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSL-GLDNLTSIQKLLLSWND-ELGG 306
L ++ N +V G+ + L L L N L G +++L L + + ++ L +S N + G
Sbjct: 84 LSNSHINGSVSGFKCSAS-LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 307 KIPTSFGKLCKLTSFSMASTKLSQDISEILG--IFSGCVAYELESLYLRGCQIFGHLTNQ 364
K+ KL L +++ +S + ++G + GC EL+ L + G +I G +
Sbjct: 143 KVSGGL-KLNSLEVLDLSANSISG--ANVVGWVLSDGC--GELKHLAISGNKISGDV--D 195
Query: 365 LGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSE-IHFVNLTKLVSF 423
+ + L FL +S+N IP LG + L+ LD+S NKL+G S I KL++
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254
Query: 424 LANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIP 483
+N +GP PL L K L L ++ + + +IP
Sbjct: 255 SSNQ-------------------------FVGPIPPLPL---KSLQYLSLAENKFTGEIP 286
Query: 484 RAFWNSIFQYYYLNVSGNQIYGGVPKFD----------------SPSMPLIITPSLLLGS 527
+ L++SGN YG VP F S +P+ +
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346
Query: 528 IFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGI-PDCWMNWPR--LRTLNLG 584
+ DLS N SG + + N S ++ L LS+N+FS I P+ N P+ L+ L L
Sbjct: 347 VLDLSFNEFSGELPESL---TNLSASLLTLDLSSNNFSGPILPNLCQN-PKNTLQELYLQ 402
Query: 585 NNNFTGSLPMSIGXXXXXXXXXXXXXXXXGVIPTSFKNFSILEALDVGENELVGSIPTWI 644
NN FTG IP + N S L +L + N L G+IP+ +
Sbjct: 403 NNGFTGK------------------------IPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Query: 645 GERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADS 704
G S+L L L N G+ P +L + +L+ L + +N L G IP ++N + +
Sbjct: 439 GS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL----- 492
Query: 705 SDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNL 764
I +S N +GEIP + L
Sbjct: 493 ---------------------------------------NWISLSNNRLTGEIPKWIGRL 513
Query: 765 QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSM 809
+ L L LS+N F+G IP +G RS+ LD + N +G IP +M
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 154/562 (27%), Positives = 233/562 (41%), Gaps = 118/562 (20%)
Query: 114 LASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELH-AETISWLSGLSLLEH 172
++ VNL +L++S F+ IP LG+ S LQ+LD+SG + IS + L LL
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254
Query: 173 LYISFVNLSKASDSLLVINSLH--SLKELKLSFCELHHFPLLSSANFSSLTTLDLSG--- 227
FV L + SL SL E K + P S +LT LDLSG
Sbjct: 255 SSNQFVGPIPP----LPLKSLQYLSLAENKFT----GEIPDFLSGACDTLTGLDLSGNHF 306
Query: 228 ----------------------------------------------NQFQGQIPSRLGNL 241
N+F G++P L NL
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366
Query: 242 T-SLKHLDLYSNQFNSAVLGWLSK--LNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLL 298
+ SL LDL SN F+ +L L + N L+ L L++N G I L N + + L L
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHL 425
Query: 299 SWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIF 358
S+N L G IP+S G L KL + L +I + L LE+L L +
Sbjct: 426 SFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-----MYVKTLETLILDFNDLT 479
Query: 359 GHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLT 418
G + + L LN++ LSNN++ G IP +G++ NL L LSNN +G + +
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI-PAELGDCR 538
Query: 419 KLVSFLANAN-------SLIF----KINPNWVPPFQLTVLE----LRSCHLGPRFPLWLQ 463
L+ N N + +F KI N++ + ++ + CH L+
Sbjct: 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL---LE 595
Query: 464 LQ----KKLNDLDISSTR----ISDKIPRAFWNSIFQ----YYYLNVSGNQIYGGVPKFD 511
Q ++LN L STR I+ ++ + F +L++S N + G +PK +
Sbjct: 596 FQGIRSEQLNRL---STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-E 651
Query: 512 SPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDC 571
SMP + I +L +N +SGSI + + + L LS+N IP
Sbjct: 652 IGSMPYLF--------ILNLGHNDISGSIPDEVGD----LRGLNILDLSSNKLDGRIPQA 699
Query: 572 WMNWPRLRTLNLGNNNFTGSLP 593
L ++L NNN +G +P
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIP 721
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 159/398 (39%), Gaps = 64/398 (16%)
Query: 54 NFTGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSXXXXXXXXXXXXSGNDFQGIQIPKY 113
NF+G +L QNP + Q + GKI P+ S N G IP
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG-TIPSS 437
Query: 114 LASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHL 173
L SL LR L L G IP +L + L+ L L + +L E S LS + L
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD--FNDLTGEIPSGLSNCTNLN-- 493
Query: 174 YISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQ 233
+IS N + I L +L LK LS N F G
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILK------------------------LSNNSFSGN 529
Query: 234 IPSRLGNLTSLKHLDLYSNQFNSAVLGWLSK---------LNDLEVLSLEDNRLQGDISS 284
IP+ LG+ SL LDL +N FN + + K + + ++++ ++ +
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589
Query: 285 LGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTS----------FSMASTKLSQDISE 334
G NL Q + + L + P C +TS F + + D+S
Sbjct: 590 AG--NLLEFQGIRSEQLNRLSTRNP------CNITSRVYGGHTSPTFDNNGSMMFLDMS- 640
Query: 335 ILGIFSGCVAYELES------LYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLS 388
+ SG + E+ S L L I G + +++G + LN L LS+N++DG IP +
Sbjct: 641 -YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699
Query: 389 LGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLAN 426
+ + L +DLSNN L+G + E+ FL N
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 737
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 103/400 (25%), Positives = 157/400 (39%), Gaps = 107/400 (26%)
Query: 12 CIESEREALLKLKHDLRDPSHRLASWIGDNGDCCK--WGGVLCGNFTGHVLELNLQNPFS 69
C +++ALL++K DL +P+ L+SW+ DCC W GVLC
Sbjct: 3 CNPQDKQALLQIKKDLGNPT-TLSSWL-PTTDCCNRTWLGVLCDT--------------- 45
Query: 70 PDDNEAYQRSMLVGKINPSXXXXXXXXXXXXSGNDFQGIQIPKYLASLVNLRYLNLSQAR 129
D + Y+ + L D G+ +PK
Sbjct: 46 --DTQTYRVNNL----------------------DLSGLNLPKPYP-------------- 67
Query: 130 FTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLV 189
IP L NL L +L + G+ L ++ L+ L +LYI+ N+S A L
Sbjct: 68 ----IPSSLANLPYLNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL- 121
Query: 190 INSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSL-KHLD 248
+ + +L L S+ L S ++ +L + GN+ G IP G+ + L +
Sbjct: 122 -SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180
Query: 249 LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSL-GLDNLTSIQKLLLSWNDELGGK 307
+ N+ + + LN L + L N L+GD S L G D T QK+ L+ N
Sbjct: 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT--QKIHLAKNS----- 232
Query: 308 IPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQ 367
+F + LS++ L L LR +I+G L L Q
Sbjct: 233 -----------LAFDLGKVGLSKN---------------LNGLDLRNNRIYGTLPQGLTQ 266
Query: 368 FKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLS---NNK 404
K L+ L +S N + G IP Q NL+ D+S NNK
Sbjct: 267 LKFLHSLNVSFNNLCGEIP----QGGNLQRFDVSAYANNK 302
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 116/272 (42%), Gaps = 56/272 (20%)
Query: 616 IPTSFKNFSILEALDVGE-NELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLAS 674
IP+S N L L +G N LVG IP I + ++L L + G P L ++ +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 675 LQILDVAYNSLLGTIPRCINNFSAMA--TADSSDQSSDILYAFSGDNKIVEDTSLV---M 729
L LD +YN+L GT+P I++ + T D + S I ++ +K+ ++ +
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 730 KGFLVEYNSILNLVRSIDISMNNFSGEIPV-----------------------EVTNLQG 766
G + + LNL +D+S N G+ V +V +
Sbjct: 187 TGKIPPTFANLNLAF-VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN 245
Query: 767 LQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMXXXXXXXXXXXXXXXXX 826
L L+L +N G +P + ++ + SL+ S N L G+IPQ
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ------------------- 286
Query: 827 GEIPSSTQLQSFDASSFAGND-LCGAPLSSCT 857
LQ FD S++A N LCG+PL +CT
Sbjct: 287 -----GGNLQRFDVSAYANNKCLCGSPLPACT 313
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 110/268 (41%), Gaps = 39/268 (14%)
Query: 147 LDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCEL 206
LDLSG+ S L+ L L LYI +N N + + +L
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-----------NLVGPIPPAIAKLTQL 103
Query: 207 HHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLN 266
H+ L ++ G IP L + +L LD N + + +S L
Sbjct: 104 HY--------------LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149
Query: 267 DLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN---DELGGKIPTSFGKLCKLTSFSM 323
+L ++ + NR+ G I D+ S KL S + L GKIP +F L L +
Sbjct: 150 NLVGITFDGNRISGAIP----DSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDL 204
Query: 324 ASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDG 383
+ L D S + G + ++L + L ++G K LN L L NN++ G
Sbjct: 205 SRNMLEGDASVLFG-----SDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYG 258
Query: 384 SIPLSLGQMANLESLDLSNNKLNGTVSE 411
++P L Q+ L SL++S N L G + +
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 114/283 (40%), Gaps = 38/283 (13%)
Query: 233 QIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLD---- 288
QI LGN T+L ++ N WL L D + + N L D+S L L
Sbjct: 13 QIKKDLGNPTTLSSWLPTTDCCNRT---WLGVLCDTDTQTYRVNNL--DLSGLNLPKPYP 67
Query: 289 ------NLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILG----- 337
NL + L + + L G IP + KL +L + T +S I + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 338 --------IFSGCVAYELESL------YLRGCQIFGHLTNQLGQFKRL-NFLGLSNNQMD 382
SG + + SL G +I G + + G F +L + +S N++
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 383 GSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPF 442
G IP + + NL +DLS N L G S + + LA NSL F + +
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA-KNSLAFDLGKVGLSK- 244
Query: 443 QLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRA 485
L L+LR+ + P L K L+ L++S + +IP+
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 68/184 (36%), Gaps = 46/184 (25%)
Query: 554 IEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGXXXXXXXXXXXXXXXX 613
+ +L ++ + S IPD L TL+ N +G+LP SI
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 614 GVIPTSFKNFS-ILEALDVGENELVGSIPTWIGE------RFSRLMI------------- 653
G IP S+ +FS + ++ + N L G IP SR M+
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 654 --------------------------LILRSNKFHGDFPIQLCRLASLQILDVAYNSLLG 687
L LR+N+ +G P L +L L L+V++N+L G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 688 TIPR 691
IP+
Sbjct: 283 EIPQ 286
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 95/248 (38%), Gaps = 41/248 (16%)
Query: 347 LESLYLRGCQ-IFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKL 405
L LY+ G + G + + + +L++L +++ + G+IP L Q+ L +LD S N L
Sbjct: 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137
Query: 406 NGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQ 465
+GT+ +L LV + N + I ++
Sbjct: 138 SGTLPP-SISSLPNLVGITFDGNRISGAIPDSYG-----------------------SFS 173
Query: 466 KKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLL 525
K + IS R++ KIP F N ++++S N + G S+L
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFAN--LNLAFVDLSRNMLEGDA--------------SVLF 217
Query: 526 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGN 585
GS + L+ + SKN+ L L N +P L +LN+
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 586 NNFTGSLP 593
NN G +P
Sbjct: 278 NNLCGEIP 285
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 77/173 (44%), Gaps = 9/173 (5%)
Query: 104 DFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISW 163
D + +Q +YL N+RYL L + + L L+NL YL L+G +L +
Sbjct: 52 DIKSVQGIQYLP---NVRYLALGGNKLHDI--SALKELTNLTYLILTG--NQLQSLPNGV 104
Query: 164 LSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTL 223
L+ L+ L + L D V + L +L L L+ +L P ++LT L
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDG--VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162
Query: 224 DLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDN 276
DLS NQ Q LT LK L LY NQ S G +L L+ + L DN
Sbjct: 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 77/161 (47%), Gaps = 7/161 (4%)
Query: 141 LSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELK 200
L N++YL L G +LH IS L L+ L +L ++ L + V + L +LKEL
Sbjct: 62 LPNVRYLALGG--NKLH--DISALKELTNLTYLILTGNQLQSLPNG--VFDKLTNLKELV 115
Query: 201 LSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLG 260
L +L P ++LT L+L+ NQ Q LT+L LDL NQ S G
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175
Query: 261 WLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
KL L+ L L N+L+ + D LTS+Q + L N
Sbjct: 176 VFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 215
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 7/158 (4%)
Query: 141 LSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELK 200
L N++YL L G +LH IS L L+ L +L ++ L + V + L +LKEL
Sbjct: 62 LPNVRYLALGG--NKLH--DISALKELTNLTYLILTGNQLQSLPNG--VFDKLTNLKELV 115
Query: 201 LSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLG 260
L +L P ++LT L L NQ Q LT+L LDL +NQ S G
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG 175
Query: 261 WLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLL 298
KL L+ LSL DN+L+ + D LTS+ + L
Sbjct: 176 VFDKLTQLKQLSLNDNQLKS-VPDGVFDRLTSLTHIWL 212
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 69/165 (41%), Gaps = 9/165 (5%)
Query: 104 DFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISW 163
D + +Q +YL N+RYL L + + L L+NL YL L+G +L +
Sbjct: 52 DIKSVQGIQYLP---NVRYLALGGNKLHDI--SALKELTNLTYLILTG--NQLQSLPNGV 104
Query: 164 LSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTL 223
L+ L+ L + L D V + L +L L L +L P ++LT L
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDG--VFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRL 162
Query: 224 DLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDL 268
DL NQ Q LT LK L L NQ S G +L L
Sbjct: 163 DLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSL 207
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 4/144 (2%)
Query: 114 LASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHL 173
L L NL YL L+ + + L+NL+ L L V +L + L+ L +L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL--VENQLQSLPDGVFDKLTNLTYL 138
Query: 174 YISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQ 233
Y+ L V + L +L L L +L P + L L L+ NQ +
Sbjct: 139 YLYHNQLQSLPKG--VFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196
Query: 234 IPSRLGNLTSLKHLDLYSNQFNSA 257
LTSL H+ L +N ++ A
Sbjct: 197 PDGVFDRLTSLTHIWLLNNPWDCA 220
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 189 VINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLD 248
V + L +L EL+L +L P + + LT L L N+ Q LTSLK L
Sbjct: 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR 163
Query: 249 LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
LY+NQ G KL +L+ L L++N+L+ + D+L ++ L L N
Sbjct: 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQEN 215
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 9/194 (4%)
Query: 223 LDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDI 282
LDL N+ LT L+ L L N+ + G +L +LE L + DN+LQ
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-- 99
Query: 283 SSLGL-DNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSG 341
+G+ D L ++ +L L N +L P F L KLT S+ +L S G+F
Sbjct: 100 LPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQ---SLPKGVFDK 155
Query: 342 CVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLS 401
+ L+ L L Q+ + L L L NNQ+ + + L+ L L
Sbjct: 156 LTS--LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213
Query: 402 NNKLNGTVSEIHFV 415
N + T + I ++
Sbjct: 214 ENPWDCTCNGIIYM 227
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 65/173 (37%), Gaps = 35/173 (20%)
Query: 101 SGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAET 160
+ N Q + I + LVNL L L + + + P +L+ L YL L Y EL +
Sbjct: 93 TDNKLQALPIGVF-DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG--YNELQS-- 147
Query: 161 ISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSL 220
L K V + L SLKEL+L +L P + + L
Sbjct: 148 -------------------LPKG-----VFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL 183
Query: 221 TTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLG------WLSKLND 267
TL L NQ + +L LK L L N ++ G WL K D
Sbjct: 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKAD 236
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 5/148 (3%)
Query: 186 SLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLD---LSGNQFQGQIPSRLGNLT 242
S L + H L +L+L + + L + F L L+ ++ N+ Q L
Sbjct: 50 SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV 109
Query: 243 SLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWND 302
+L L L NQ S L L LSL N LQ + D LTS+++L L +N+
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRL-YNN 167
Query: 303 ELGGKIPTSFGKLCKLTSFSMASTKLSQ 330
+L +F KL +L + + + +L +
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQLKR 195
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 103/492 (20%), Positives = 186/492 (37%), Gaps = 86/492 (17%)
Query: 222 TLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGD 281
L LS N + L+ L+ L L N+ S DLE L + NRLQ
Sbjct: 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN- 114
Query: 282 ISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQ-DISEILGIFS 340
+ + S++ L LS+ND + FG L KLT +++ K Q D+ + +
Sbjct: 115 ---ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL 171
Query: 341 GCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDL 400
C+ +L S +++G + + Q+ L+ + N+ + +S+ + +L+ L
Sbjct: 172 SCILLDLVSYHIKGGET---ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ---L 225
Query: 401 SNNKLNGTVSEIHFVNLTKLVSFLANA-------NSLIFKINPNW---VPPFQLTVLELR 450
SN KLN N +L++FL+ N + I W V FQ
Sbjct: 226 SNIKLNDE-------NCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF------ 272
Query: 451 SCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKF 510
W + + LN +++ T D+ + + + + NQ++
Sbjct: 273 ---------FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF------ 317
Query: 511 DSPSMPLIITPSLLLGSIFDLSNNALSGS---IFHLICQGENFSKNIEFLKLSTNHFSEG 567
+ + L +++ LS S H++C + FL + N F++
Sbjct: 318 -------LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS--PSSFTFLNFTQNVFTDS 368
Query: 568 IPDCWMNWPRLRTLNLGNNNFTGSLPMSIGXXXXXXXXXXXXXXXXGVIPTSFKNFSILE 627
+ RL+TL L N +++ KN S LE
Sbjct: 369 VFQGCSTLKRLQTLILQRNGLKNFFKVALMT----------------------KNMSSLE 406
Query: 628 ALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLG 687
LDV N L +++L L SN G + C +++LD+ +N+ +
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS--VFRCLPPKVKVLDL-HNNRIM 463
Query: 688 TIPRCINNFSAM 699
+IP+ + + A+
Sbjct: 464 SIPKDVTHLQAL 475
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 27/151 (17%)
Query: 648 FSRLMILILRSNKFHGDFPIQLCR--LASLQILDVAYNSLLGTIPRCINNFSAMATADSS 705
RL LIL+ N F + L ++SL+ LDV+ NSL +
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL-------------------N 416
Query: 706 DQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQ 765
+ D A++ ++ +S ++ G + + + V+ +D+ NN IP +VT+LQ
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSV--FRCLPPKVKVLDLH-NNRIMSIPKDVTHLQ 473
Query: 766 GLQSLNLSHNLFTGRIPDNIGVMRSIESLDF 796
LQ LN++ N +PD GV + SL +
Sbjct: 474 ALQELNVASNQLKS-VPD--GVFDRLTSLQY 501
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 220 LTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDN 276
+ LDL N+ IP + +L +L+ L++ SNQ S G +L L+ + L DN
Sbjct: 452 VKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 119/270 (44%), Gaps = 32/270 (11%)
Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
L++L ++ S +L L N + L + ++ NQ P L NLT+L L L++N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 253 QFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSF 312
Q + L L +L L L N + DIS+L LTS+Q+L S N K
Sbjct: 118 QITD--IDPLKNLTNLNRLELSSNTI-SDISALS--GLTSLQQLSFSSNQVTDLK---PL 169
Query: 313 GKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLN 372
L L ++S K+S DIS + + LESL QI +T LG L+
Sbjct: 170 ANLTTLERLDISSNKVS-DISVLAKL------TNLESLIATNNQI-SDIT-PLGILTNLD 220
Query: 373 FLGLSNNQMD--GSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSL 430
L L+ NQ+ G+ L + NL LDL+NN+++ LTKL AN
Sbjct: 221 ELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQ- 272
Query: 431 IFKINPNWVPPFQLTVLELRSCHLGPRFPL 460
I I+P LT LEL L P+
Sbjct: 273 ISNISP-LAGLTALTNLELNENQLEDISPI 301
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 119/270 (44%), Gaps = 32/270 (11%)
Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
L++L ++ S +L L N + L + ++ NQ P L NLT+L L L++N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 253 QFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSF 312
Q + L L +L L L N + DIS+L LTS+Q+L S N K
Sbjct: 118 QITD--IDPLKNLTNLNRLELSSNTI-SDISALS--GLTSLQQLSFSSNQVTDLK---PL 169
Query: 313 GKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLN 372
L L ++S K+S DIS + + LESL QI +T LG L+
Sbjct: 170 ANLTTLERLDISSNKVS-DISVLAKL------TNLESLIATNNQI-SDIT-PLGILTNLD 220
Query: 373 FLGLSNNQMD--GSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSL 430
L L+ NQ+ G+ L + NL LDL+NN+++ LTKL AN
Sbjct: 221 ELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQ- 272
Query: 431 IFKINPNWVPPFQLTVLELRSCHLGPRFPL 460
I I+P LT LEL L P+
Sbjct: 273 ISNISP-LAGLTALTNLELNENQLEDISPI 301
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 119/270 (44%), Gaps = 32/270 (11%)
Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
L++L ++ S +L L N + L + ++ NQ P L NLT+L L L++N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 253 QFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSF 312
Q + L L +L L L N + DIS+L LTS+Q+L S N K
Sbjct: 118 QITD--IDPLKNLTNLNRLELSSNTI-SDISALS--GLTSLQQLNFSSNQVTDLK---PL 169
Query: 313 GKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLN 372
L L ++S K+S DIS + + LESL QI +T LG L+
Sbjct: 170 ANLTTLERLDISSNKVS-DISVLAKL------TNLESLIATNNQI-SDIT-PLGILTNLD 220
Query: 373 FLGLSNNQMD--GSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSL 430
L L+ NQ+ G+ L + NL LDL+NN+++ LTKL AN
Sbjct: 221 ELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQ- 272
Query: 431 IFKINPNWVPPFQLTVLELRSCHLGPRFPL 460
I I+P LT LEL L P+
Sbjct: 273 ISNISP-LAGLTALTNLELNENQLEDISPI 301
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 166 GLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDL 225
GL+ L L + + L S V + L L L L+ +L PL + + L L L
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAG--VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 226 SGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSL 285
GNQ + LT LK L L +NQ S G KL +L+ LSL N+LQ +
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHG 173
Query: 286 GLDNLTSIQKLLLSWN 301
D L +Q + L N
Sbjct: 174 AFDRLGKLQTITLFGN 189
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 4/141 (2%)
Query: 117 LVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYIS 176
L L +LNL + + +L+ L L L+ +L + + L+ L+ LY+
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN--NQLASLPLGVFDHLTQLDKLYLG 115
Query: 177 FVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPS 236
L V + L LKEL+L+ +L P + ++L TL LS NQ Q
Sbjct: 116 GNQLKSLPSG--VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
Query: 237 RLGNLTSLKHLDLYSNQFNSA 257
L L+ + L+ NQF+ +
Sbjct: 174 AFDRLGKLQTITLFGNQFDCS 194
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 59/153 (38%), Gaps = 12/153 (7%)
Query: 125 LSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKAS 184
LS A F G+ NL Q LS F+ L E + N AS
Sbjct: 50 LSDATFRGLTKLTWLNLDYNQLQTLSAGVFD------------DLTELGTLGLANNQLAS 97
Query: 185 DSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSL 244
L V + L L +L L +L P + L L L+ NQ Q LT+L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 245 KHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNR 277
+ L L +NQ S G +L L+ ++L N+
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 10/155 (6%)
Query: 267 DLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMAST 326
D E L L+ L +S LT + L L +N +L F L +L + +A+
Sbjct: 36 DTEKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANN 93
Query: 327 KLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIP 386
+L+ S LG+F +L+ LYL G Q+ + + +L L L+ NQ+ SIP
Sbjct: 94 QLA---SLPLGVFDHLT--QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIP 147
Query: 387 L-SLGQMANLESLDLSNNKLNGTVSEIHFVNLTKL 420
+ ++ NL++L LS N+L +V F L KL
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKL 181
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 166 GLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDL 225
GL+ L L + + L S V + L L L L+ +L PL + + L L L
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAG--VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 226 SGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSL 285
GNQ + LT LK L L +NQ S G KL +L+ LSL N+LQ +
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHG 173
Query: 286 GLDNLTSIQKLLLSWN 301
D L +Q + L N
Sbjct: 174 AFDRLGKLQTITLFGN 189
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 4/141 (2%)
Query: 117 LVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYIS 176
L L +LNL + + +L+ L L L+ +L + + L+ L+ LY+
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN--NQLASLPLGVFDHLTQLDKLYLG 115
Query: 177 FVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPS 236
L V + L LKEL+L+ +L P + ++L TL LS NQ Q
Sbjct: 116 GNQLKSLPSG--VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
Query: 237 RLGNLTSLKHLDLYSNQFNSA 257
L L+ + L+ NQF+ +
Sbjct: 174 AFDRLGKLQTITLFGNQFDCS 194
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 59/153 (38%), Gaps = 12/153 (7%)
Query: 125 LSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKAS 184
LS A F G+ NL Q LS F+ L E + N AS
Sbjct: 50 LSDATFRGLTKLTWLNLDYNQLQTLSAGVFD------------DLTELGTLGLANNQLAS 97
Query: 185 DSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSL 244
L V + L L +L L +L P + L L L+ NQ Q LT+L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 245 KHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNR 277
+ L L +NQ S G +L L+ ++L N+
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 10/155 (6%)
Query: 267 DLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMAST 326
D E L L+ L +S LT + L L +N +L F L +L + +A+
Sbjct: 36 DTEKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANN 93
Query: 327 KLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIP 386
+L+ S LG+F +L+ LYL G Q+ + + +L L L+ NQ+ SIP
Sbjct: 94 QLA---SLPLGVFDHLT--QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIP 147
Query: 387 L-SLGQMANLESLDLSNNKLNGTVSEIHFVNLTKL 420
+ ++ NL++L LS N+L +V F L KL
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKL 181
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 121/268 (45%), Gaps = 29/268 (10%)
Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
L++L ++ S +L L N + L + ++ NQ P L NLT+L L L++N
Sbjct: 67 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122
Query: 253 QFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSF 312
Q + L L +L L L N + DIS+L LTS+Q+L S+ +++ P
Sbjct: 123 QITD--IDPLKNLTNLNRLELSSNTI-SDISALS--GLTSLQQL--SFGNQVTDLKP--L 173
Query: 313 GKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLN 372
L L ++S K+S DIS + + LESL QI +T LG L+
Sbjct: 174 ANLTTLERLDISSNKVS-DISVLAKL------TNLESLIATNNQI-SDIT-PLGILTNLD 224
Query: 373 FLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIF 432
L L+ NQ+ +L + NL LDL+NN+++ LTKL AN I
Sbjct: 225 ELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQ-IS 278
Query: 433 KINPNWVPPFQLTVLELRSCHLGPRFPL 460
I+P LT LEL L P+
Sbjct: 279 NISP-LAGLTALTNLELNENQLEDISPI 305
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 121/268 (45%), Gaps = 29/268 (10%)
Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
L++L ++ S +L L N + L + ++ NQ P L NLT+L L L++N
Sbjct: 66 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121
Query: 253 QFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSF 312
Q + L L +L L L N + DIS+L LTS+Q+L S+ +++ P
Sbjct: 122 QITD--IDPLKNLTNLNRLELSSNTI-SDISALS--GLTSLQQL--SFGNQVTDLKP--L 172
Query: 313 GKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLN 372
L L ++S K+S DIS + + LESL QI +T LG L+
Sbjct: 173 ANLTTLERLDISSNKVS-DISVLAKL------TNLESLIATNNQI-SDIT-PLGILTNLD 223
Query: 373 FLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIF 432
L L+ NQ+ +L + NL LDL+NN+++ LTKL AN I
Sbjct: 224 ELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQ-IS 277
Query: 433 KINPNWVPPFQLTVLELRSCHLGPRFPL 460
I+P LT LEL L P+
Sbjct: 278 NISP-LAGLTALTNLELNENQLEDISPI 304
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 189 VINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLD 248
V + L SL +L L +L P +SLT L+LS NQ Q LT LK L
Sbjct: 47 VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106
Query: 249 LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLL 298
L +NQ S G KL L+ L L N+L+ + D LTS+Q + L
Sbjct: 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWL 155
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 52/130 (40%), Gaps = 7/130 (5%)
Query: 152 VYFELHAETISWLSG-----LSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCEL 206
Y +L ++ L L+ L LY+ L + V N L SL L LS +L
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG--VFNKLTSLTYLNLSTNQL 88
Query: 207 HHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLN 266
P + L L L+ NQ Q LT LK L LY NQ S G +L
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148
Query: 267 DLEVLSLEDN 276
L+ + L DN
Sbjct: 149 SLQYIWLHDN 158
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 221 TTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQG 280
T LDL N + LTSL L L N+ S G +KL L L+L N+LQ
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 281 DISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKL 328
+ + D LT +++L L+ N +L F KL +L + +L
Sbjct: 91 LPNGV-FDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQL 136
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 122/270 (45%), Gaps = 33/270 (12%)
Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
L++L ++ S +L L N + L + ++ NQ P L NLT+L L L++N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 253 QFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSF 312
Q + L L +L L L N + DIS+L LTS+Q+L ++ +++ P
Sbjct: 118 QITD--IDPLKNLTNLNRLELSSNTI-SDISALS--GLTSLQQL--NFGNQVTDLKP--L 168
Query: 313 GKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLN 372
L L ++S K+S DIS + + LESL QI +T LG L+
Sbjct: 169 ANLTTLERLDISSNKVS-DISVLAKL------TNLESLIATNNQI-SDIT-PLGILTNLD 219
Query: 373 FLGLSNNQMD--GSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSL 430
L L+ NQ+ G+ L + NL LDL+NN+++ LTKL AN
Sbjct: 220 ELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQ- 271
Query: 431 IFKINPNWVPPFQLTVLELRSCHLGPRFPL 460
I I+P LT LEL L P+
Sbjct: 272 ISNISP-LAGLTALTNLELNENQLEDISPI 300
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 121/268 (45%), Gaps = 29/268 (10%)
Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
L++L ++ S +L L N + L + ++ NQ P L NLT+L L L++N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 253 QFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSF 312
Q + L L +L L L N + DIS+L LTS+Q+L ++ +++ P
Sbjct: 118 QITD--IDPLKNLTNLNRLELSSNTI-SDISALS--GLTSLQQL--NFGNQVTDLKP--L 168
Query: 313 GKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLN 372
L L ++S K+S DIS + + LESL QI +T LG L+
Sbjct: 169 ANLTTLERLDISSNKVS-DISVLAKL------TNLESLIATNNQI-SDIT-PLGILTNLD 219
Query: 373 FLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIF 432
L L+ NQ+ +L + NL LDL+NN+++ LTKL AN I
Sbjct: 220 ELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQ-IS 273
Query: 433 KINPNWVPPFQLTVLELRSCHLGPRFPL 460
I+P LT LEL L P+
Sbjct: 274 NISP-LAGLTALTNLELNENQLEDISPI 300
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 92/212 (43%), Gaps = 54/212 (25%)
Query: 118 VNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISF 177
+++ LNL + RF+ + + LQ LDL+ + + S + GL+LL+ L +S
Sbjct: 251 MSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLK---GLPSGMKGLNLLKKLVLSV 307
Query: 178 VNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSR 237
+ + C+ +S+ANF SLT L + GN
Sbjct: 308 NHFDQ--------------------LCQ------ISAANFPSLTHLYIRGN--------- 332
Query: 238 LGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQG-DISSLGLDNLTSIQKL 296
+K L L +G L KL +L+ L L N ++ D SL L NL+ +Q L
Sbjct: 333 ------VKKLHLG--------VGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTL 378
Query: 297 LLSWNDELGGKIPTSFGKLCKLTSFSMASTKL 328
LS N+ LG + +F + +L +A T+L
Sbjct: 379 NLSHNEPLGLQ-SQAFKECPQLELLDLAFTRL 409
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 82/350 (23%), Positives = 136/350 (38%), Gaps = 61/350 (17%)
Query: 388 SLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKI------------- 434
+ ++ NL LDL+ ++N + E F + +L + + N LIF
Sbjct: 49 TFSRLMNLTFLDLTRCQINW-IHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHL 107
Query: 435 --------NPNWVPPFQLTVLE---LRSCHLGP-RFPLWLQLQKKLNDLDISSTRISDKI 482
N ++P L LE L S H+ +FP + L LD + I I
Sbjct: 108 FLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFP-ARNLKVLDFQNNAI-HYI 165
Query: 483 PRAFWNSIFQYY--YLNVSGNQIYG-GVPKFDS-----------PSMPLII-------TP 521
R S+ Q LN +GN + G + FDS P++ +I T
Sbjct: 166 SREDMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQ 225
Query: 522 SLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTL 581
SL LG+ D+ + +S ++ +C+ ++E L L + FS+ + + +L+ L
Sbjct: 226 SLWLGTFEDIDDEDISSAMLKGLCE-----MSVESLNLQEHRFSDISSTTFQCFTQLQEL 280
Query: 582 NLGNNNFTGSLPMSIGXXXXXXXXXXXXXXXXGVIPTSFKNFSILEALDVGENELVGSIP 641
+L + G LP + + S NF L L + N V +
Sbjct: 281 DLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN--VKKLH 337
Query: 642 TWIG--ERFSRLMILILRSNKFHGD--FPIQLCRLASLQILDVAYNSLLG 687
+G E+ L L L N +QL L+ LQ L++++N LG
Sbjct: 338 LGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLG 387
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 743 VRSIDISMNNFSGE--IPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQ 800
++++D+S N+ +++ NL LQ+LNLSHN G +E LD + +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 801 LSGQIPQS 808
L PQS
Sbjct: 409 LHINAPQS 416
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 144/323 (44%), Gaps = 53/323 (16%)
Query: 101 SGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAET 160
+G IQ +YL NL YLNL+ + T + P LSNL + L+ +Y + T
Sbjct: 52 AGEKVASIQGIEYLT---NLEYLNLNGNQITDISP-----LSNL--VKLTNLYIGTNKIT 101
Query: 161 -ISWLSGLSLLEHLYISFVNLSKAS--DSLLVINSL-----HSLKELK----------LS 202
IS L L+ L LY++ N+S S +L SL H+L +L L+
Sbjct: 102 DISALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLT 161
Query: 203 FCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAV-LGW 261
E + AN + L +L L+ NQ + P L +LTSL + Y NQ +
Sbjct: 162 VTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVAN 219
Query: 262 LSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIP--TSFGKLCKLT 319
++LN L++ +N++ D+S L NL+ L+W + +I + L KL
Sbjct: 220 XTRLNSLKI---GNNKIT-DLSPLA--NLSQ-----LTWLEIGTNQISDINAVKDLTKLK 268
Query: 320 SFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNN 379
++ S ++S DIS +L S +L SL+L Q+ +G L L LS N
Sbjct: 269 XLNVGSNQIS-DIS-VLNNLS-----QLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQN 321
Query: 380 QMDGSIPLSLGQMANLESLDLSN 402
+ P L ++ +S D +N
Sbjct: 322 HITDIRP--LASLSKXDSADFAN 342
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 133/284 (46%), Gaps = 36/284 (12%)
Query: 141 LSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELK 200
L+NL+YL+L+G IS LS L L +LYI ++ S + +L +L+EL
Sbjct: 65 LTNLEYLNLNGNQIT----DISPLSNLVKLTNLYIGTNKITDIS----ALQNLTNLRELY 116
Query: 201 LSFCELHHF-PLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVL 259
L+ + PL AN + +L+L N + S L N T L +L + ++
Sbjct: 117 LNEDNISDISPL---ANLTKXYSLNLGANHNLSDL-SPLSNXTGLNYLTVTESKVKDVT- 171
Query: 260 GWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLT 319
++ L DL LSL N+++ DIS L +LTS+ ++ +++ P +L
Sbjct: 172 -PIANLTDLYSLSLNYNQIE-DISPLA--SLTSLH-YFTAYVNQITDITP--VANXTRLN 224
Query: 320 SFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNN 379
S + + K++ D+S + + +L L + QI N + +L L + +N
Sbjct: 225 SLKIGNNKIT-DLSPLANL------SQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSN 275
Query: 380 QM-DGSIPLSLGQMANLESLDLSNNKLNGTVSEI--HFVNLTKL 420
Q+ D S+ L ++ L SL L+NN+L E+ NLT L
Sbjct: 276 QISDISV---LNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTL 316
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 190 INSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRL-GNLTSLKHLD 248
++ LH LK + + L H P + +L+ L+L N ++PS L +L +L+ ++
Sbjct: 119 LDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN--IEEMPSHLFDDLENLESIE 176
Query: 249 LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
SN+ G K+ L+ L+L N+L+ + D LTS+QK+ L N
Sbjct: 177 FGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGI-FDRLTSLQKIWLHTN 228
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 124/518 (23%), Positives = 193/518 (37%), Gaps = 57/518 (11%)
Query: 195 SLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQF 254
S K L LSF L H S +F L LDLS + Q +L+ L L L N
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 255 NSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGK 314
S LG S L+ L+ L + L + + + +L ++++L ++ N K+P F
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 315 LCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFK--RLN 372
L L ++S K+ L + L F Q G FK RL+
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI----QPGAFKEIRLH 203
Query: 373 FLGLSN-----NQMDGSIP---------LSLGQM---ANLESLDLS--NNKLNGTVSEIH 413
L L N N M I L LG+ NLE D S N T+ E
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263
Query: 414 FV-------NLTKLVSFLANANSL-IFKINPNWVPPFQLTV----LELRSCHLGPRFPLW 461
++ L + L N +S + + V F LEL +C G +FP
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG-QFPT- 321
Query: 462 LQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITP 521
L+L K L L +S + + S+ ++ L+ +G G + D + L
Sbjct: 322 LKL-KSLKRLTFTSNKGGNAFSEVDLPSL-EFLDLSRNGLSFKGCCSQSDFGTTSLKYL- 378
Query: 522 SLLLGSIFDLSNNALS-GSIFHLICQGENFS-----------KNIEFLKLSTNHFSEGIP 569
L + +S+N L + HL Q N +N+ +L +S H
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 570 DCWMNWPRLRTLNLGNNNFTGS-LPMSIGXXXXXXXXXXXXXXXXGVIPTSFKNFSILEA 628
+ L L + N+F + LP + PT+F + S L+
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Query: 629 LDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFP 666
L++ N+L S+P I +R + L + L +N + P
Sbjct: 499 LNMASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 101 SGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
+GN FQ +P L NL +L+LSQ + + P +LS+LQ L+++
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Query: 141 LSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLL--VINSLHSLKE 198
L NL YLD+S + + I +GLS LE L ++ + ++ L + L +L
Sbjct: 420 LRNLIYLDISHTHTRVAFNGI--FNGLSSLEVLKMAG---NSFQENFLPDIFTELRNLTF 474
Query: 199 LKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAV 258
L LS C+L + + SSL L+++ NQ + LTSL+ + L++N ++ +
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534
Query: 259 --LGWLSK 264
+ +LS+
Sbjct: 535 PRIDYLSR 542
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%)
Query: 192 SLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYS 251
S L+ L LS CE+ + + S L+TL L+GN Q L+SL+ L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 252 NQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
S + L L+ L++ N +Q NLT+++ L LS N
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 195 SLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQF 254
S K L LSF L H S +F L LDLS + Q +L+ L L L N
Sbjct: 30 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 89
Query: 255 NSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGK 314
S LG S L+ L+ L + L + + + +L ++++L ++ N K+P F
Sbjct: 90 QSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 148
Query: 315 LCKLTSFSMASTKL 328
L L ++S K+
Sbjct: 149 LTNLEHLDLSSNKI 162
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%)
Query: 192 SLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYS 251
S L+ L LS CE+ + + S L+TL L+GN Q L+SL+ L
Sbjct: 51 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 110
Query: 252 NQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
S + L L+ L++ N +Q NLT+++ L LS N
Sbjct: 111 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 195 SLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQF 254
S K L LSF L H S +F L LDLS + Q +L+ L L L N
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 255 NSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGK 314
S LG S L+ L+ L + L + + + +L ++++L ++ N K+P F
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 315 LCKLTSFSMASTKL 328
L L ++S K+
Sbjct: 148 LTNLEHLDLSSNKI 161
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%)
Query: 192 SLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYS 251
S L+ L LS CE+ + + S L+TL L+GN Q L+SL+ L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 252 NQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
S + L L+ L++ N +Q NLT+++ L LS N
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 3/135 (2%)
Query: 195 SLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQF 254
S K L LSF L H S +F L LDLS + Q +L+ L L L N
Sbjct: 31 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 90
Query: 255 NSAVLGWLSKLNDLEVL-SLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFG 313
S LG S L+ L+ L +LE N + + + +L ++++L ++ N K+P F
Sbjct: 91 QSLALGAFSGLSSLQKLVALETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 148
Query: 314 KLCKLTSFSMASTKL 328
L L ++S K+
Sbjct: 149 NLTNLEHLDLSSNKI 163
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%)
Query: 192 SLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYS 251
S L+ L LS CE+ + + S L+TL L+GN Q L+SL+ L
Sbjct: 52 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALE 111
Query: 252 NQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
S + L L+ L++ N +Q NLT+++ L LS N
Sbjct: 112 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 95/391 (24%), Positives = 156/391 (39%), Gaps = 66/391 (16%)
Query: 207 HHFPLLSSANFSSLT---TLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLS 263
H F LSS+ F T LDL+ G +PS + + SLK L L +N F+ +
Sbjct: 263 HRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAA 321
Query: 264 KLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSM 323
L L ++ N + D+ + L+ L ++QKL LS +D C L ++
Sbjct: 322 SFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSD-------IEASDCCNLQLKNL 374
Query: 324 ASTK-LSQDISEILGI----FSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNF---LG 375
+ L+ +E LG+ F C EL + H+ F+ L+ L
Sbjct: 375 RHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHL----HVKAPHSPFQNLHLLRVLN 430
Query: 376 LSNNQMDGSIPLSLGQMANLESLDLSNNKL-NGTVSEIHFVNLTKLVSFLANANSLIFKI 434
LS+ +D S L + +L L+L N +G++S+ NL ++V
Sbjct: 431 LSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISK---TNLLQMVG------------ 475
Query: 435 NPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYY 494
L +L L SC+L + +N LD+S ++ A S +
Sbjct: 476 --------SLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDAL--SHLKGL 525
Query: 495 YLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNI 554
YLN++ N I +P + P+L SI +LS+N L + C +F I
Sbjct: 526 YLNMASNNIR---------IIPPHLLPALSQQSIINLSHNPLDCT-----CSNIHF---I 568
Query: 555 EFLKLSTNHFSEGIPDCWMNWPRLRTLNLGN 585
+ K + + + N P LR + L +
Sbjct: 569 TWYKENLHKLEDSEETTCANPPSLRGVKLSD 599
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 117/308 (37%), Gaps = 86/308 (27%)
Query: 112 KYLASLVNLRYLNLSQARFTG--MIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSL 169
+ L L NL+ L+LS + QL NL +LQYL+LS Y E
Sbjct: 343 RCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLS--YNEPLGLEDQAFKECPQ 400
Query: 170 LEHLYISFVNLS-KASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGN 228
LE L ++F +L KA S +LH L+ L LS C LD S
Sbjct: 401 LELLDVAFTHLHVKAPHS--PFQNLHLLRVLNLSHC-----------------LLDTSNQ 441
Query: 229 QFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVL-SLEDNRLQGDISSLGL 287
L L L+HL+L N F G +SK N L+++ SLE I L
Sbjct: 442 HL-------LAGLQDLRHLNLQGNSFQD---GSISKTNLLQMVGSLE-------ILILSS 484
Query: 288 DNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYEL 347
NL SI + +F L + ++ L+ D + L
Sbjct: 485 CNLLSIDQ--------------QAFHGLRNVNHLDLSHNSLTGDSMDALS---------- 520
Query: 348 ESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNG 407
+L+G +L +++N + P L ++ ++LS+N L+
Sbjct: 521 ---HLKGL-----------------YLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDC 560
Query: 408 TVSEIHFV 415
T S IHF+
Sbjct: 561 TCSNIHFI 568
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 195 SLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQF 254
S K L LSF L H S +F L LDLS + Q +L+ L L L N
Sbjct: 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112
Query: 255 NSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGK 314
S LG S L+ L+ L + L + + + +L ++++L ++ N K+P F
Sbjct: 113 QSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 171
Query: 315 LCKLTSFSMASTKL 328
L L ++S K+
Sbjct: 172 LTNLEHLDLSSNKI 185
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 29/131 (22%)
Query: 101 SGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLS-GVYFELHAE 159
+GN FQ +P L NL +L+LSQ + + P +LS+LQ L++S +F L
Sbjct: 477 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 536
Query: 160 TISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSS 219
L+ L +L++ +N + + K+ EL HFP SS
Sbjct: 537 PYKCLNSLQVLDY----------------SLNHIMTSKKQ-----ELQHFP-------SS 568
Query: 220 LTTLDLSGNQF 230
L L+L+ N F
Sbjct: 569 LAFLNLTQNDF 579
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 110/468 (23%), Positives = 183/468 (39%), Gaps = 129/468 (27%)
Query: 190 INSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQG-QIPSRLGNLTSLKHLD 248
++SL L ++ + L +FP+ + +L L+++ N Q ++P NLT+L+HLD
Sbjct: 123 LSSLQKLVAVETNLASLENFPI---GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179
Query: 249 LYSNQ------------------------------------FNSAVLGWLSKLNDLEVLS 272
L SN+ F L L+ N+ + L+
Sbjct: 180 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLN 239
Query: 273 LEDNRLQG-----------------------DISSL-GLDNLTSIQKLLLSWNDELGGKI 308
+ +QG D S+L GL NLT I++ L++ D I
Sbjct: 240 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT-IEEFRLAYLDYYLDGI 298
Query: 309 PTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQF 368
F L ++SFS+ S + E + FS + + L L C+ T +L
Sbjct: 299 IDLFNCLTNVSSFSLVSVTI-----ERVKDFSYNFGW--QHLELVNCKFGQFPTLKLKSL 351
Query: 369 KRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLN--GTVSEIHFVNLTKLVSFLAN 426
KRL F ++N+ G S + +LE LDLS N L+ G S+ F ++ + +L
Sbjct: 352 KRLTF---TSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTIS--LKYLDL 404
Query: 427 ANSLIFKINPNWVPPFQLTVLELRSCHLG--PRFPLWLQLQKKLNDLDISSTRISDKIPR 484
+ + + ++ N++ QL L+ + +L F ++L L + L LDIS T R
Sbjct: 405 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHT-----R 458
Query: 485 AFWNSIF----QYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSI 540
+N IF L ++GN F +P I T
Sbjct: 459 VAFNGIFNGLSSLEVLKMAGN-------SFQENFLPDIFTE------------------- 492
Query: 541 FHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNF 588
+N+ FL LS + P + + L+ LN+ +NNF
Sbjct: 493 ----------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 89/185 (48%), Gaps = 17/185 (9%)
Query: 118 VNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISF 177
++L+YL+LS M + LG L L++LD + +E +LS +L+ +L IS
Sbjct: 397 ISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLI-YLDISH 454
Query: 178 VNLSKASDSLLVINSLHSLKELKL---SFCELHHFPLLSSANFSSLTTLDLSGNQFQGQI 234
+ A + + N L SL+ LK+ SF E + P + + +LT LDLS Q +
Sbjct: 455 THTRVAFNG--IFNGLSSLEVLKMAGNSFQE-NFLPDIFTE-LRNLTFLDLSQCQLEQLS 510
Query: 235 PSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDN--------RLQGDISSLG 286
P+ +L+SL+ L++ N F S LN L+VL N LQ SSL
Sbjct: 511 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 570
Query: 287 LDNLT 291
NLT
Sbjct: 571 FLNLT 575
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 195 SLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQF 254
S K L LSF L H S +F L LDLS + Q +L+ L L L N
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 255 NSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGK 314
S LG S L+ L+ L + L + + + +L ++++L ++ N K+P F
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 315 LCKLTSFSMASTKL 328
L L ++S K+
Sbjct: 148 LTNLEHLDLSSNKI 161
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 29/131 (22%)
Query: 101 SGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLS-GVYFELHAE 159
+GN FQ +P L NL +L+LSQ + + P +LS+LQ L++S +F L
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512
Query: 160 TISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSS 219
L+ L +L++ ++ + SK EL HFP SS
Sbjct: 513 PYKCLNSLQVLDY-SLNHIMTSKKQ--------------------ELQHFP-------SS 544
Query: 220 LTTLDLSGNQF 230
L L+L+ N F
Sbjct: 545 LAFLNLTQNDF 555
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 29/131 (22%)
Query: 101 SGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLS-GVYFELHAE 159
+GN FQ +P L NL +L+LSQ + + P +LS+LQ L++S +F L
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217
Query: 160 TISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSS 219
L+ L +L++ +N + + K+ EL HFP SS
Sbjct: 218 PYKCLNSLQVLDY----------------SLNHIMTSKKQ-----ELQHFP-------SS 249
Query: 220 LTTLDLSGNQF 230
L L+L+ N F
Sbjct: 250 LAFLNLTQNDF 260
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 89/185 (48%), Gaps = 17/185 (9%)
Query: 118 VNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISF 177
+L+YL+LS M + LG L L++LD + +E +LS +L+ +L IS
Sbjct: 78 TSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLI-YLDISH 135
Query: 178 VNLSKASDSLLVINSLHSLKELKL---SFCELHHFPLLSSANFSSLTTLDLSGNQFQGQI 234
+ A + + N L SL+ LK+ SF E + P + + +LT LDLS Q +
Sbjct: 136 THTRVAFNG--IFNGLSSLEVLKMAGNSFQE-NFLPDIFTE-LRNLTFLDLSQCQLEQLS 191
Query: 235 PSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVL--------SLEDNRLQGDISSLG 286
P+ +L+SL+ L++ N F S LN L+VL + + LQ SSL
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251
Query: 287 LDNLT 291
NLT
Sbjct: 252 FLNLT 256
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 189 VINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLD 248
V +SL +LKEL L +L P+ + + LT LDL NQ + L LK L
Sbjct: 59 VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118
Query: 249 LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
+ N+ G + +L L L+L+ N+L+ I D L+S+ L N
Sbjct: 119 MCCNKLTELPRG-IERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169
Score = 36.6 bits (83), Expect = 0.062, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 223 LDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDI 282
L L NQ P +L +LK L L SNQ + +G L L VL L N+L +
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VL 103
Query: 283 SSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKL 328
S D L +++L + N ++P +L LT ++ +L
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQL 147
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 89/224 (39%), Gaps = 7/224 (3%)
Query: 195 SLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQF 254
S K L LS+ L H S +F L LDLS + Q +L+ L L L N
Sbjct: 31 STKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 90
Query: 255 NSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGK 314
S LG S L+ L+ L + L + + + +L ++++L ++ N K+P F
Sbjct: 91 QSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 149
Query: 315 LCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFK--RLN 372
L L ++S K+ L + L F Q G FK RL
Sbjct: 150 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI----QPGAFKEIRLK 205
Query: 373 FLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVN 416
L L NQ+ ++ +L+ + L N + + I +++
Sbjct: 206 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 249
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%)
Query: 192 SLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYS 251
S L+ L LS CE+ + + S L+TL L+GN Q L+SL+ L
Sbjct: 52 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 111
Query: 252 NQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
S + L L+ L++ N +Q NLT+++ L LS N
Sbjct: 112 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 89/224 (39%), Gaps = 7/224 (3%)
Query: 195 SLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQF 254
S K L LS+ L H S +F L LDLS + Q +L+ L L L N
Sbjct: 30 STKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 89
Query: 255 NSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGK 314
S LG S L+ L+ L + L + + + +L ++++L ++ N K+P F
Sbjct: 90 QSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 148
Query: 315 LCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFK--RLN 372
L L ++S K+ L + L F Q G FK RL
Sbjct: 149 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI----QPGAFKEIRLK 204
Query: 373 FLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVN 416
L L NQ+ ++ +L+ + L N + + I +++
Sbjct: 205 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 248
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%)
Query: 192 SLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYS 251
S L+ L LS CE+ + + S L+TL L+GN Q L+SL+ L
Sbjct: 51 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 110
Query: 252 NQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
S + L L+ L++ N +Q NLT+++ L LS N
Sbjct: 111 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 218 SSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNR 277
SS T L+L N+ Q LT L L L NQ S G KL L +L L +N+
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 278 LQGDISSLGLDNLTSIQKLLLSWN 301
LQ + + D LT +++L L N
Sbjct: 88 LQS-LPNGVFDKLTQLKELALDTN 110
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%)
Query: 188 LVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHL 247
L+ +L +L L +SF L PL + L L L GN+ + P L L+ L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 248 DLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL 278
L +NQ G L+ L +L+ L L++N L
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 80/179 (44%), Gaps = 26/179 (14%)
Query: 234 IPSRLGNLTSLKHLD---LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQ--GDISSLGLD 288
+P L T++ HL LY+ F+ A L ++L L + E +LQ G + LG
Sbjct: 25 LPPDLPKDTTILHLSENLLYT--FSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTL 82
Query: 289 NLT--SIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYE 346
+L+ +Q L L LG +P LT ++ +L+ S LG G E
Sbjct: 83 DLSHNQLQSLPL-----LGQTLPA-------LTVLDVSFNRLT---SLPLGALRGLG--E 125
Query: 347 LESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKL 405
L+ LYL+G ++ L +L L L+NNQ+ L + NL++L L N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%)
Query: 188 LVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHL 247
L+ +L +L L +SF L PL + L L L GN+ + P L L+ L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 248 DLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL 278
L +NQ G L+ L +L+ L L++N L
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 80/179 (44%), Gaps = 26/179 (14%)
Query: 234 IPSRLGNLTSLKHLD---LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQ--GDISSLGLD 288
+P L T++ HL LY+ F+ A L ++L L + E +LQ G + LG
Sbjct: 25 LPPDLPKDTTILHLSENLLYT--FSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTL 82
Query: 289 NLT--SIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYE 346
+L+ +Q L L LG +P LT ++ +L+ S LG G E
Sbjct: 83 DLSHNQLQSLPL-----LGQTLPA-------LTVLDVSFNRLT---SLPLGALRGLG--E 125
Query: 347 LESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKL 405
L+ LYL+G ++ L +L L L+NNQ+ L + NL++L L N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%)
Query: 188 LVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHL 247
L+ +L +L L +SF L PL + L L L GN+ + P L L+ L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 248 DLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL 278
L +NQ G L+ L +L+ L L++N L
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 80/179 (44%), Gaps = 26/179 (14%)
Query: 234 IPSRLGNLTSLKHLD---LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQ--GDISSLGLD 288
+P L T++ HL LY+ F+ A L ++L L + E +LQ G + LG
Sbjct: 25 LPPDLPKDTTILHLSENLLYT--FSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTL 82
Query: 289 NLT--SIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYE 346
+L+ +Q L L LG +P LT ++ +L+ S LG G E
Sbjct: 83 DLSHNQLQSLPL-----LGQTLPA-------LTVLDVSFNRLT---SLPLGALRG--LGE 125
Query: 347 LESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKL 405
L+ LYL+G ++ L +L L L+NNQ+ L + NL++L L N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%)
Query: 188 LVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHL 247
L+ +L +L L +SF L PL + L L L GN+ + P L L+ L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 248 DLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL 278
L +NQ G L+ L +L+ L L++N L
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 80/179 (44%), Gaps = 26/179 (14%)
Query: 234 IPSRLGNLTSLKHLD---LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQ--GDISSLGLD 288
+P L T++ HL LY+ F+ A L ++L L + E +LQ G + LG
Sbjct: 25 LPPDLPKDTTILHLSENLLYT--FSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTL 82
Query: 289 NLT--SIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYE 346
+L+ +Q L L LG +P LT ++ +L+ S LG G E
Sbjct: 83 DLSHNQLQSLPL-----LGQTLPA-------LTVLDVSFNRLT---SLPLGALRG--LGE 125
Query: 347 LESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKL 405
L+ LYL+G ++ L +L L L+NNQ+ L + NL++L L N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 223 LDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDI 282
L L NQ P LT L LDL +NQ G KL L LSL DN+L+ I
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-I 93
Query: 283 SSLGLDNLTSIQKLLL 298
DNL S+ + L
Sbjct: 94 PRGAFDNLKSLTHIWL 109
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 221 TTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQG 280
TT+D SG +P+ G T+ + L LY NQ G +L L L L++N+L
Sbjct: 12 TTVDCSGKSL-ASVPT--GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 281 DISSLGLDNLTSIQKLLLSWNDELGGKIPT-SFGKLCKLTSFSMASTKLSQDISEIL 336
+ + D LT + + LS ND IP +F L LT + + S+IL
Sbjct: 69 -LPAGVFDKLTQLTQ--LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDIL 122
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 223 LDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDI 282
L L NQ P LT L LDL +NQ G KL L LSL DN+L+ I
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-I 101
Query: 283 SSLGLDNLTSIQKLLL 298
DNL S+ + L
Sbjct: 102 PRGAFDNLKSLTHIWL 117
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 221 TTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQG 280
TT+D SG +P+ G T+ + L LY NQ G +L L L L++N+L
Sbjct: 20 TTVDCSGKSL-ASVPT--GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT- 75
Query: 281 DISSLGL-DNLTSIQKLLLSWNDELGGKIPT-SFGKLCKLTSFSMASTKLSQDISEIL 336
+ G+ D LT + + LS ND IP +F L LT + + S+IL
Sbjct: 76 -VLPAGVFDKLTQLTQ--LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDIL 130
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%)
Query: 188 LVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHL 247
L+ +L +L L +SF L PL + L L L GN+ + P L L+ L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 248 DLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL 278
L +N G L+ L +L+ L L++N L
Sbjct: 154 SLANNDLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%)
Query: 188 LVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHL 247
L+ +L +L L +SF L PL + L L L GN+ + P L L+ L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 248 DLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL 278
L +N G L+ L +L+ L L++N L
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 112/297 (37%), Gaps = 38/297 (12%)
Query: 193 LHSLKELKLSFCELHHFPLLSS--ANFSSLTTLDLSGNQFQG-QIPSRLGNLTSLKHLDL 249
L L EL+L FC L L N +LT LDLS NQ + + G L SLK +D
Sbjct: 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155
Query: 250 YSNQFNSAVLGWLSKL--NDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGK 307
SNQ L L L SL N L +S + + ++L D G
Sbjct: 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN- 214
Query: 308 IPTSFGKLCKLT-SFSMASTKLSQDISEILG-------------------IFSGCVAYEL 347
G +T +FS A +K SQ S IL F+G +
Sbjct: 215 -----GWTVDITGNFSNAISK-SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSV 268
Query: 348 ESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNG 407
L L +F + K L L L+ N+++ + + NL+ L+LS N L G
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-G 327
Query: 408 TVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELR-----SCHLGPRFP 459
+ +F L K+ N + + + +L L+LR + H P P
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIP 384
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%)
Query: 188 LVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHL 247
L+ +L +L L +SF L PL + L L L GN+ + P L L+ L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 248 DLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL 278
L +N G L+ L +L+ L L++N L
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%)
Query: 188 LVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHL 247
L+ +L +L L +SF L PL + L L L GN+ + P L L+ L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 248 DLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL 278
L +N G L+ L +L+ L L++N L
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%)
Query: 188 LVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHL 247
L+ +L +L L +SF L PL + L L L GN+ + P L L+ L
Sbjct: 95 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 154
Query: 248 DLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL 278
L +N G L+ L +L+ L L++N L
Sbjct: 155 SLANNNLTELPAGLLNGLENLDTLLLQENSL 185
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%)
Query: 188 LVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHL 247
L+ +L +L L +SF L PL + L L L GN+ + P L L+ L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 248 DLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL 278
L +N G L+ L +L+ L L++N L
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 217 FSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDN 276
FS L LDL+ ++PS L L++LK L L +N+F + S L LS++ N
Sbjct: 277 FSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335
Query: 277 RLQGDISSLGLDNLTSIQKLLLSWND 302
+ ++ + L+NL ++++L LS +D
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDD 361
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 140 NLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKEL 199
NL L+ L+LS ++ +E + GL L+HL + + K + + NSL +L L
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQL--FDGLPALQHLNLQGNHFPKGN--IQKTNSLQTLGRL 478
Query: 200 K---LSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNS 256
+ LSFC+L + + + +DLS N+ L +L + +L+L SN +
Sbjct: 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI 537
Query: 257 AVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLC 316
+ L L+ ++L N L S++ L W E K+ + LC
Sbjct: 538 ILPSLLPILSQQRTINLRQNPLDCTCSNI----------YFLEWYKENMQKLEDTEDTLC 587
Query: 317 K 317
+
Sbjct: 588 E 588
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 223 LDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDI 282
L L N+ P LT L LDL +NQ G KL L LSL DN+L+ I
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-I 93
Query: 283 SSLGLDNLTSIQKLLL 298
DNL S+ + L
Sbjct: 94 PRGAFDNLRSLTHIWL 109
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
L +L+ L L C L P L++ L L+LSGN+ P LTSL+ L L
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTA--LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA 212
Query: 253 QFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKL 296
Q + L LE L+L N L SL D T + +L
Sbjct: 213 QVATIERNAFDDLKSLEELNLSHNNLM----SLPHDLFTPLHRL 252
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 117 LVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYIS 176
LVNLRYLNL IP+ L L L+ L+LSG +L GL+ L L++
Sbjct: 155 LVNLRYLNLGMCNLKD-IPN-LTALVRLEELELSGNRLDLIRP--GSFQGLTSLRKLWLM 210
Query: 177 FVNLSKASDSLLVINSLHSLKELKLSFCELHHFP 210
++ + + L SL+EL LS L P
Sbjct: 211 HAQVATIERN--AFDDLKSLEELNLSHNNLMSLP 242
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 1/130 (0%)
Query: 195 SLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQF 254
S K + LSF L S +NFS L LDLS + + L L +L L N
Sbjct: 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92
Query: 255 NSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGK 314
S G S L LE L + +L + S + L +++KL ++ N K+P F
Sbjct: 93 QSFSPGSFSGLTSLENLVAVETKL-ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 315 LCKLTSFSMA 324
L L ++
Sbjct: 152 LTNLVHVDLS 161
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 13/138 (9%)
Query: 136 HQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASD-SLLVINSLH 194
+ N S LQ+LDLS E E +W GL L +L ++ + S S + SL
Sbjct: 50 YSFSNFSELQWLDLSRCEIET-IEDKAW-HGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107
Query: 195 SLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQG-QIPSRLGNLTSLKHLDLYSNQ 253
+L ++ L FP+ +L L+++ N ++P+ NLT+L H+DL N
Sbjct: 108 NLVAVETKLASLESFPI---GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164
Query: 254 FNSAVLGWLSKLNDLEVL 271
+ +NDL+ L
Sbjct: 165 IQTIT------VNDLQFL 176
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
L +L+ L L C L P L++ L L+LSGN+ P LTSL+ L L
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTA--LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA 212
Query: 253 QFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKL 296
Q + L LE L+L N L SL D T + +L
Sbjct: 213 QVATIERNAFDDLKSLEELNLSHNNLM----SLPHDLFTPLHRL 252
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 117 LVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYIS 176
LVNLRYLNL IP+ L L L+ L+LSG +L GL+ L L++
Sbjct: 155 LVNLRYLNLGMCNLKD-IPN-LTALVRLEELELSGNRLDLIRP--GSFQGLTSLRKLWLM 210
Query: 177 FVNLSKASDSLLVINSLHSLKELKLSFCELHHFP 210
++ + + L SL+EL LS L P
Sbjct: 211 HAQVATIERN--AFDDLKSLEELNLSHNNLMSLP 242
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 1/130 (0%)
Query: 195 SLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQF 254
S K + LSF L S +NFS L LDLS + + L L +L L N
Sbjct: 28 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 87
Query: 255 NSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGK 314
S G S L LE L + +L + S + L +++KL ++ N K+P F
Sbjct: 88 QSFSPGSFSGLTSLENLVAVETKL-ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 146
Query: 315 LCKLTSFSMA 324
L L ++
Sbjct: 147 LTNLVHVDLS 156
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 13/138 (9%)
Query: 136 HQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASD-SLLVINSLH 194
+ N S LQ+LDLS E E +W GL L +L ++ + S S + SL
Sbjct: 45 YSFSNFSELQWLDLSRCEIET-IEDKAW-HGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 102
Query: 195 SLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQG-QIPSRLGNLTSLKHLDLYSNQ 253
+L ++ L FP+ +L L+++ N ++P+ NLT+L H+DL N
Sbjct: 103 NLVAVETKLASLESFPI---GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 159
Query: 254 FNSAVLGWLSKLNDLEVL 271
+ +NDL+ L
Sbjct: 160 IQTIT------VNDLQFL 171
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 195 SLKELKLSFCELH---HFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYS 251
++K L LSF ++ H L + AN L N +G LG SL+HLDL
Sbjct: 53 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG---SLEHLDLSD 109
Query: 252 NQFNSAVLGWLSKLNDLEVLSLEDNRLQG-DISSLGLDNLTSIQKL 296
N +S W L+ L+ L+L N Q ++SL NLT++Q L
Sbjct: 110 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-FPNLTNLQTL 154
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 142/314 (45%), Gaps = 39/314 (12%)
Query: 114 LASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHL 173
L + NL+ L L +R + +L +L++LDLS + L + + SW LS L++L
Sbjct: 72 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH--LSSLSSSWFGPLSSLKYL 129
Query: 174 YISFVNLSKASDSLLVINSLHSLKELK-LSFCELHHFPLLSSANFSSLTTLD------LS 226
+ + +L V + +L L+ L + F + +F+ LT+L+ LS
Sbjct: 130 NL----MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 185
Query: 227 GNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL-QGDISSL 285
+Q Q L ++ + HL L+ ++ + + L+ + L L D L + S L
Sbjct: 186 LRNYQSQ---SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 242
Query: 286 GLDNLTSIQKLLLSWNDELGGKIPT--SFGKLCKLTSFSMASTKLSQDISEI--LGIFSG 341
+D ++S K L G + T SF +L KL + + +++ D + LG F+
Sbjct: 243 PVDEVSSPMKKL-----AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP 297
Query: 342 C---VAYEL---ESLYLRGCQI-----FGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLG 390
V EL E++ +R I F L+ +++ + + N+++ +P S
Sbjct: 298 SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFS 356
Query: 391 Q-MANLESLDLSNN 403
Q + +LE LDLS N
Sbjct: 357 QHLKSLEFLDLSEN 370
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 195 SLKELKLSFCELH---HFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYS 251
++K L LSF ++ H L + AN L N +G LG SL+HLDL
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG---SLEHLDLSD 83
Query: 252 NQFNSAVLGWLSKLNDLEVLSLEDNRLQG-DISSLGLDNLTSIQKL 296
N +S W L+ L+ L+L N Q ++SL NLT++Q L
Sbjct: 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-FPNLTNLQTL 128
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 142/314 (45%), Gaps = 39/314 (12%)
Query: 114 LASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHL 173
L + NL+ L L +R + +L +L++LDLS + L + + SW LS L++L
Sbjct: 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH--LSSLSSSWFGPLSSLKYL 103
Query: 174 YISFVNLSKASDSLLVINSLHSLKELK-LSFCELHHFPLLSSANFSSLTTLD------LS 226
+ + +L V + +L L+ L + F + +F+ LT+L+ LS
Sbjct: 104 NL----MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159
Query: 227 GNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL-QGDISSL 285
+Q Q L ++ + HL L+ ++ + + L+ + L L D L + S L
Sbjct: 160 LRNYQSQ---SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216
Query: 286 GLDNLTSIQKLLLSWNDELGGKIPT--SFGKLCKLTSFSMASTKLSQDISEI--LGIFSG 341
+D ++S K L G + T SF +L KL + + +++ D + LG F+
Sbjct: 217 PVDEVSSPMKKL-----AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP 271
Query: 342 C---VAYEL---ESLYLRGCQI-----FGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLG 390
V EL E++ +R I F L+ +++ + + N+++ +P S
Sbjct: 272 SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFS 330
Query: 391 Q-MANLESLDLSNN 403
Q + +LE LDLS N
Sbjct: 331 QHLKSLEFLDLSEN 344
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 9/195 (4%)
Query: 215 ANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLE 274
A+F L L+L+ N P NL +L+ L L SN+ LG + L++L L +
Sbjct: 53 ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112
Query: 275 DNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISE 334
+N++ + + +L +++ L + ND L +F L L ++ L+ +E
Sbjct: 113 ENKIVILLDYM-FQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170
Query: 335 ILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSN-NQMDGSIPLSLGQMA 393
L G + L L + + + + RL L +S+ +D P L +
Sbjct: 171 ALSHLHGLIVLRLRHLNINAIRDYS-----FKRLYRLKVLEISHWPYLDTMTPNCLYGL- 224
Query: 394 NLESLDLSNNKLNGT 408
NL SL +++ L
Sbjct: 225 NLTSLSITHCNLTAV 239
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 191 NSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLY 250
N+L +L+ L L L PL S+LT LD+S N+ + +L +LK L++
Sbjct: 77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136
Query: 251 SNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLL 298
N S LN LE L+LE + +++S+ + L+ + L++
Sbjct: 137 DNDLVYISHRAFSGLNSLEQLTLE----KCNLTSIPTEALSHLHGLIV 180
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 25/132 (18%)
Query: 194 HSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLY--- 250
++ E++L + P + + + L +DLS NQ P L SL L LY
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 251 ---------------------SNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDN 289
+N+ N + L++L +LSL DN+LQ I+
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSP 150
Query: 290 LTSIQKLLLSWN 301
L +IQ + L+ N
Sbjct: 151 LRAIQTMHLAQN 162
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 223 LDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDI 282
L L NQ P +LT L +L+L NQ + +G KL L L+L N+L+ I
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK-SI 103
Query: 283 SSLGLDNLTSIQKLLL---SWNDE 303
DNL S+ + L W+ E
Sbjct: 104 PMGVFDNLKSLTHIYLFNNPWDCE 127
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%)
Query: 216 NFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLED 275
+ + LT L+L+ NQ LT L HL L+ NQ S +G L L + L +
Sbjct: 62 SLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFN 121
Query: 276 NRLQGDISSL 285
N + S +
Sbjct: 122 NPWDCECSDI 131
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 25/132 (18%)
Query: 194 HSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLY--- 250
++ E++L + P + + + L +DLS NQ P L SL L LY
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 251 ---------------------SNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDN 289
+N+ N + L++L +LSL DN+LQ I+
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSP 150
Query: 290 LTSIQKLLLSWN 301
L +IQ + L+ N
Sbjct: 151 LRAIQTMHLAQN 162
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 77/204 (37%), Gaps = 35/204 (17%)
Query: 117 LVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISW-------LSGLSL 169
L +LRYL+L + P LSNL+YL L + + S L
Sbjct: 271 LPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKY 330
Query: 170 LEHLYISFVNLSKASDSLLVINSLHSLKELKLS-------------FCELHHFPLLSSAN 216
LE+L + N+ + L SLK L LS F L H PLL
Sbjct: 331 LEYLNMDDNNIPSTKSN--TFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLL---- 384
Query: 217 FSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLG--WLSKLNDLEVLSLE 274
TL+L+ N L L+ LDL N+ + G W N E+
Sbjct: 385 -----TLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSY 439
Query: 275 DNRLQGDISSLGLDNLTSIQKLLL 298
+ LQ SS L + S+Q+L+L
Sbjct: 440 NKYLQLSTSSFAL--VPSLQRLML 461
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 220 LTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQ 279
+T L L GNQF +P L N L +DL +N+ ++ S + L L L NRL+
Sbjct: 33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 280 GDISSLGLDNLTSIQKLLLSWND 302
I D L S++ L L ND
Sbjct: 92 C-IPPRTFDGLKSLRLLSLHGND 113
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 24/127 (18%)
Query: 336 LGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANL 395
L + + ++ LYL G Q F + +L +K L + LSNN++ S M L
Sbjct: 22 LKVLPKGIPRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80
Query: 396 ESLDLSNNKLN-----------------------GTVSEIHFVNLTKLVSFLANANSLIF 432
+L LS N+L V E F +L+ L AN L
Sbjct: 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140
Query: 433 KINPNWV 439
N W+
Sbjct: 141 DCNMQWL 147
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.7 bits (73), Expect = 0.93, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 1/115 (0%)
Query: 164 LSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTL 223
+GL+LLE L +S N S + L L L L C L ++L L
Sbjct: 76 FTGLALLEQLDLS-DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134
Query: 224 DLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL 278
L N Q +L +L HL L+ N+ +S L+ L+ L L NR+
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.7 bits (73), Expect = 0.93, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 1/115 (0%)
Query: 164 LSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTL 223
+GL+LLE L +S N S + L L L L C L ++L L
Sbjct: 75 FTGLALLEQLDLS-DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 133
Query: 224 DLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL 278
L N Q +L +L HL L+ N+ +S L+ L+ L L NR+
Sbjct: 134 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 188
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 225 LSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISS 284
L+ NQ P +L +L+ L SN+ + G KL L L L DN L+ I
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPR 98
Query: 285 LGLDNLTSIQKLLL 298
DNL S+ + L
Sbjct: 99 GAFDNLKSLTHIYL 112
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 189 VINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLD 248
V + L +L++L + +L P + LT LDL+ N + NL SL H+
Sbjct: 52 VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111
Query: 249 LYSNQFN 255
LY+N ++
Sbjct: 112 LYNNPWD 118
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 372 NFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLI 431
N L S Q+ ++P SL L LDLS+N L+ +E LT L S L + N L
Sbjct: 21 NILSCSKQQL-PNVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77
Query: 432 FKINPNWVPPFQLTVLELRSCHL 454
F + +VP L L+L S HL
Sbjct: 78 FISSEAFVPVPNLRYLDLSSNHL 100
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 7/122 (5%)
Query: 213 SSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLS 272
+ ++L +L LS N + +L++LDL SN ++ S L LEVL
Sbjct: 59 TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118
Query: 273 LEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSF----GKLCKLTSFSMASTKL 328
L +N + + +++ +QKL LS N + P KL KL ++S KL
Sbjct: 119 LYNNHIVV-VDRNAFEDMAQLQKLYLSQNQ--ISRFPVELIKDGNKLPKLMLLDLSSNKL 175
Query: 329 SQ 330
+
Sbjct: 176 KK 177
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
L +LK L L C + P L+ L L++SGN F P L+SLK L + ++
Sbjct: 195 LFNLKYLNLGMCNIKDMPNLTP--LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252
Query: 253 QFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLL 297
Q + L L L+L N ++SSL D T ++ L+
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHN----NLSSLPHDLFTPLRYLV 293
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 76/193 (39%), Gaps = 17/193 (8%)
Query: 216 NFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLED 275
N +L TL L N+ P L L+ L L NQ L +L V E
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI 133
Query: 276 NRLQGDISSLGLDNLTSIQ---KLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDI 332
+++ + + GL+ + ++ L S E G +F + KL+ +A T ++
Sbjct: 134 TKVRKSVFN-GLNQMIVVELGTNPLKSSGIENG-----AFQGMKKLSYIRIADTNITT-- 185
Query: 333 SEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQM 392
I G + L L+L G +I L L LGLS N + SL
Sbjct: 186 -----IPQG-LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239
Query: 393 ANLESLDLSNNKL 405
+L L L+NNKL
Sbjct: 240 PHLRELHLNNNKL 252
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 76/193 (39%), Gaps = 17/193 (8%)
Query: 216 NFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLED 275
N +L TL L N+ P L L+ L L NQ L +L V E
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI 133
Query: 276 NRLQGDISSLGLDNLTSIQ---KLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDI 332
+++ + + GL+ + ++ L S E G +F + KL+ +A T ++
Sbjct: 134 TKVRKSVFN-GLNQMIVVELGTNPLKSSGIENG-----AFQGMKKLSYIRIADTNITT-- 185
Query: 333 SEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQM 392
I G + L L+L G +I L L LGLS N + SL
Sbjct: 186 -----IPQG-LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239
Query: 393 ANLESLDLSNNKL 405
+L L L+NNKL
Sbjct: 240 PHLRELHLNNNKL 252
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 134/354 (37%), Gaps = 70/354 (19%)
Query: 109 QIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVY--FELHAETISWLSG 166
Q+P+ A ++ Y++LS + L +LQ+L + + T LS
Sbjct: 24 QVPELPA---HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80
Query: 167 LSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDL- 225
L +L+ Y F+ L + N L +L+ L L+ C L +LS F LT+L++
Sbjct: 81 LIILKLDYNQFLQLETGA-----FNGLANLEVLTLTQCNLDG-AVLSGNFFKPLTSLEML 134
Query: 226 ---SGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAV------------------------ 258
N + Q S N+ LDL N+ S
Sbjct: 135 VLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD 194
Query: 259 -----LGWLS-----KLNDLEVLSLEDNRLQGDISSLGLDNL--TSIQKLLLSWNDELGG 306
LGW K + L L N + ++ D + T IQ L+LS + +G
Sbjct: 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG- 253
Query: 307 KIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLG 366
+SF + K + + F G A +++ L +IF L +
Sbjct: 254 ------------SSFGHTNFKDPDNFT-----FKGLEASGVKTCDLSKSKIFALLKSVFS 296
Query: 367 QFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKL 420
F L L L+ N+++ + + +L L+LS N L G++ F NL KL
Sbjct: 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKL 349
>pdb|1U2W|A Chain A, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
pdb|1U2W|B Chain B, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
pdb|1U2W|C Chain C, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
pdb|1U2W|D Chain D, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Length = 122
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 12/79 (15%)
Query: 276 NRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEI 335
NR+QGD+ ++ +++ + ++L + DE KI + LC+ + DI+ I
Sbjct: 18 NRIQGDLQTV---DISGVSQILKAIADENRAKITYA---LCQDEELCVC------DIANI 65
Query: 336 LGIFSGCVAYELESLYLRG 354
LG+ ++ L +LY +G
Sbjct: 66 LGVTIANASHHLRTLYKQG 84
>pdb|3F72|A Chain A, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Metal Binding Site 2 Mutant
pdb|3F72|B Chain B, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Metal Binding Site 2 Mutant
pdb|3F72|C Chain C, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Metal Binding Site 2 Mutant
pdb|3F72|D Chain D, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Metal Binding Site 2 Mutant
pdb|3F72|E Chain E, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Metal Binding Site 2 Mutant
pdb|3F72|F Chain F, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Metal Binding Site 2 Mutant
Length = 122
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 12/79 (15%)
Query: 276 NRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEI 335
NR+QGD+ ++ +++ + ++L + DE KI + LC+ + DI+ I
Sbjct: 18 NRIQGDLQTV---DISGVSQILKAIADENRAKITYA---LCQDEELCVC------DIANI 65
Query: 336 LGIFSGCVAYELESLYLRG 354
LG+ ++ L +LY +G
Sbjct: 66 LGVTIANASHHLRTLYKQG 84
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 220 LTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDN 276
+ LDL N+ + IP ++ L +L+ L++ SNQ S G +L L+ + L N
Sbjct: 423 IKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 111/277 (40%), Gaps = 20/277 (7%)
Query: 142 SNLQYLDLSGVYFELHAETISW-----LSGLSLLEHLYISFVNLSKASDSLLVINSLHSL 196
SNLQY V++++H + + ++L ++F N + +++S +
Sbjct: 15 SNLQY---DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71
Query: 197 KELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNS 256
+ L L+ ++ + A ++ L + N + P N+ L L L N +S
Sbjct: 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131
Query: 257 AVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELG---GKIPTSFG 313
G L LS+ +N L+ I TS+Q L LS N IP+ F
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH 190
Query: 314 K-----LCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQF 368
L + +A +L + I + G V EL L L+ + T L +
Sbjct: 191 ANVSYNLLSTLAIPIAVEELDASHNSI-NVVRGPVNVELTILKLQHNNLTD--TAWLLNY 247
Query: 369 KRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKL 405
L + LS N+++ + +M LE L +SNN+L
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
L +L+ L L+ C L P L+ L LDLSGN P L L+ L + +
Sbjct: 184 LSNLRYLNLAMCNLREIPNLTP--LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241
Query: 253 QFNSAVLGWLSKLNDLEVLSLEDNRL 278
Q L L ++L N L
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNL 267
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 22/65 (33%)
Query: 109 QIPKYLASLVNLRYLNLSQARFTGM----------------------IPHQLGNLSNLQY 146
++P + +L NLR L+LS R T + +P + GNL NLQ+
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQF 320
Query: 147 LDLSG 151
L + G
Sbjct: 321 LGVEG 325
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 756 EIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS 802
E+P E+ NL L+ L+LSHN T +P +G ++ F N ++
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 310 TSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFK 369
T L K+T ++ L +++S I G+ S +++L L QI L
Sbjct: 85 TPLKNLTKITELELSGNPL-KNVSAIAGLQS------IKTLDLTSTQITD--VTPLAGLS 135
Query: 370 RLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANS 429
L L L NQ+ PL+ + NL+ L + NN++N NL+KL + A+ N
Sbjct: 136 NLQVLYLDLNQITNISPLA--GLTNLQYLSIGNNQVNDLTP---LANLSKLTTLRADDNK 190
Query: 430 LIFKINP 436
I I+P
Sbjct: 191 -ISDISP 196
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 12/170 (7%)
Query: 114 LASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHL 173
L VNL+ L L+ + +L +L++LDLS Y L + SW LS L
Sbjct: 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS--YNYLSNLSSSWFKPLSSL--- 126
Query: 174 YISFVNLSKASDSLLVINSL--HSLKELKLSFCELHHFPLLSSANFSSLT---TLDLSGN 228
+F+NL L SL H K L + F + +F+ LT L++ +
Sbjct: 127 --TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184
Query: 229 QFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL 278
Q P L ++ ++ HL L+ Q + ++ + +E L L D L
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 220 LTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAV-LGWLSK 264
L TL+L NQ +P +L SL L+L SN FN L W ++
Sbjct: 104 LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,810,823
Number of Sequences: 62578
Number of extensions: 1027411
Number of successful extensions: 2715
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1849
Number of HSP's gapped (non-prelim): 476
length of query: 931
length of database: 14,973,337
effective HSP length: 108
effective length of query: 823
effective length of database: 8,214,913
effective search space: 6760873399
effective search space used: 6760873399
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)