Query 002360
Match_columns 931
No_of_seqs 744 out of 4945
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 22:17:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.1E-69 2.5E-74 676.2 47.0 583 13-852 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.8E-56 3.9E-61 557.7 40.9 514 219-850 70-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.1E-36 4.5E-41 315.3 5.4 228 245-481 81-308 (873)
4 KOG4194 Membrane glycoprotein 100.0 5E-36 1.1E-40 312.4 7.5 373 345-800 78-450 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 4.3E-39 9.3E-44 321.1 -16.6 480 218-831 45-544 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 4.1E-39 8.9E-44 321.3 -19.8 498 89-802 41-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.6E-35 3.4E-40 325.7 -6.0 243 526-824 243-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 4.8E-34 1E-38 314.1 -5.9 498 83-683 11-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 2.1E-31 4.5E-36 279.5 -3.0 386 289-821 5-394 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 9.9E-31 2.1E-35 274.4 -3.1 371 217-666 6-379 (1255)
11 KOG4237 Extracellular matrix p 99.9 3.2E-26 6.9E-31 229.3 -6.0 426 345-823 67-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 6.3E-21 1.4E-25 237.8 27.3 347 310-800 552-904 (1153)
13 PLN03210 Resistant to P. syrin 99.9 9.5E-21 2.1E-25 236.2 27.6 316 267-685 590-905 (1153)
14 KOG4237 Extracellular matrix p 99.9 1.7E-24 3.7E-29 217.0 -5.4 425 292-799 68-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 4.9E-21 1.1E-25 220.2 17.8 202 552-831 262-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 1.3E-20 2.8E-25 216.7 16.6 186 553-812 283-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 9.5E-19 2.1E-23 203.2 12.8 205 552-826 220-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 8.5E-19 1.8E-23 203.6 11.1 245 444-802 180-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 8E-19 1.7E-23 190.8 2.0 283 470-825 2-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.8E-18 6E-23 186.6 2.4 285 447-801 3-319 (319)
21 KOG0617 Ras suppressor protein 99.7 7.8E-19 1.7E-23 156.0 -4.7 181 599-830 32-216 (264)
22 KOG0617 Ras suppressor protein 99.7 1.8E-18 3.8E-23 153.8 -5.4 185 551-809 32-219 (264)
23 PLN03150 hypothetical protein; 99.6 1.1E-14 2.3E-19 169.5 11.1 115 743-857 420-538 (623)
24 PLN03150 hypothetical protein; 99.4 2.9E-12 6.3E-17 149.3 12.2 134 10-160 367-509 (623)
25 KOG0532 Leucine-rich repeat (L 99.3 1.1E-13 2.3E-18 146.4 -3.8 113 579-698 78-190 (722)
26 KOG0532 Leucine-rich repeat (L 99.3 1.2E-13 2.6E-18 146.1 -3.8 176 599-828 74-249 (722)
27 COG4886 Leucine-rich repeat (L 99.2 9.4E-12 2E-16 139.1 6.7 199 556-808 97-296 (394)
28 COG4886 Leucine-rich repeat (L 99.2 1.6E-11 3.4E-16 137.4 7.4 200 579-832 96-296 (394)
29 KOG4658 Apoptotic ATPase [Sign 99.1 1E-11 2.2E-16 147.2 1.2 160 25-204 481-652 (889)
30 KOG1909 Ran GTPase-activating 99.1 1E-11 2.2E-16 124.6 -0.8 142 524-685 157-310 (382)
31 KOG3207 Beta-tubulin folding c 99.0 4.7E-11 1E-15 123.0 1.4 212 91-329 119-339 (505)
32 KOG1259 Nischarin, modulator o 99.0 7.2E-11 1.6E-15 115.3 2.2 130 650-829 285-415 (490)
33 KOG3207 Beta-tubulin folding c 99.0 5.1E-11 1.1E-15 122.8 0.6 138 548-685 117-258 (505)
34 KOG1259 Nischarin, modulator o 99.0 9.8E-11 2.1E-15 114.4 1.0 201 551-805 213-415 (490)
35 KOG1909 Ran GTPase-activating 99.0 6.7E-11 1.5E-15 118.7 -0.4 184 83-279 20-226 (382)
36 PF14580 LRR_9: Leucine-rich r 99.0 3.7E-10 8.1E-15 107.0 3.9 87 114-208 15-102 (175)
37 PF14580 LRR_9: Leucine-rich r 98.9 6.7E-10 1.5E-14 105.3 4.0 108 551-662 18-126 (175)
38 KOG4658 Apoptotic ATPase [Sign 98.9 1.7E-09 3.7E-14 128.6 5.6 117 84-204 561-678 (889)
39 PF13855 LRR_8: Leucine rich r 98.8 2.4E-09 5.3E-14 83.2 3.6 60 766-825 2-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.8 5.7E-09 1.2E-13 81.1 3.9 61 741-801 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.7 4.2E-09 9.2E-14 117.7 1.2 225 551-830 94-322 (414)
42 KOG0531 Protein phosphatase 1, 98.7 2.4E-09 5.1E-14 119.7 -1.2 217 551-826 71-290 (414)
43 PF08263 LRRNT_2: Leucine rich 98.6 3.6E-08 7.9E-13 69.7 4.4 40 14-53 2-43 (43)
44 KOG1859 Leucine-rich repeat pr 98.6 1.4E-09 3E-14 118.8 -6.0 197 576-828 84-294 (1096)
45 KOG4579 Leucine-rich repeat (L 98.5 6.8E-09 1.5E-13 89.9 -4.1 85 744-831 80-164 (177)
46 KOG1859 Leucine-rich repeat pr 98.4 8.2E-09 1.8E-13 112.9 -4.9 109 739-852 185-295 (1096)
47 KOG2120 SCF ubiquitin ligase, 98.4 7E-09 1.5E-13 101.8 -5.8 158 94-277 186-349 (419)
48 KOG2120 SCF ubiquitin ligase, 98.3 1.4E-08 3.1E-13 99.6 -6.3 158 219-404 186-349 (419)
49 COG5238 RNA1 Ran GTPase-activa 98.3 1.4E-07 3E-12 91.6 -0.7 90 524-613 157-255 (388)
50 KOG2982 Uncharacterized conser 98.2 5.6E-07 1.2E-11 88.7 2.6 88 166-253 69-157 (418)
51 KOG4579 Leucine-rich repeat (L 98.1 2E-07 4.4E-12 81.0 -2.9 65 744-810 103-167 (177)
52 PRK15386 type III secretion pr 98.0 1.4E-05 3E-10 85.4 8.7 77 596-685 48-124 (426)
53 KOG2982 Uncharacterized conser 98.0 1.2E-06 2.7E-11 86.3 -0.1 63 368-430 198-261 (418)
54 PF12799 LRR_4: Leucine Rich r 97.9 6.9E-06 1.5E-10 58.1 2.6 36 766-802 2-37 (44)
55 COG5238 RNA1 Ran GTPase-activa 97.9 7.7E-06 1.7E-10 79.8 3.5 164 138-301 88-282 (388)
56 PF12799 LRR_4: Leucine Rich r 97.8 1.8E-05 3.8E-10 56.0 2.9 38 789-827 1-38 (44)
57 KOG4341 F-box protein containi 97.8 1.6E-06 3.5E-11 89.7 -3.8 233 94-327 139-383 (483)
58 PRK15386 type III secretion pr 97.6 0.0002 4.3E-09 76.8 8.2 92 572-682 48-141 (426)
59 KOG3665 ZYG-1-like serine/thre 97.5 4.4E-05 9.6E-10 89.1 2.6 151 93-248 122-281 (699)
60 KOG1644 U2-associated snRNP A' 97.5 0.00018 3.8E-09 67.7 5.9 85 192-276 62-150 (233)
61 KOG4341 F-box protein containi 97.5 1.1E-05 2.3E-10 83.9 -2.9 265 89-357 160-438 (483)
62 KOG3665 ZYG-1-like serine/thre 97.4 0.0001 2.3E-09 86.0 4.3 151 118-273 122-282 (699)
63 KOG1644 U2-associated snRNP A' 97.4 0.00013 2.8E-09 68.5 3.8 106 94-229 43-151 (233)
64 KOG2739 Leucine-rich acidic nu 97.4 7.8E-05 1.7E-09 73.3 2.5 114 83-200 33-149 (260)
65 PF13306 LRR_5: Leucine rich r 97.1 0.0016 3.4E-08 59.7 7.8 122 570-698 6-127 (129)
66 PF13306 LRR_5: Leucine rich r 96.9 0.0028 6.1E-08 58.0 7.0 119 550-675 10-128 (129)
67 KOG2739 Leucine-rich acidic nu 96.8 0.00045 9.8E-09 68.1 1.4 109 113-249 38-150 (260)
68 KOG2123 Uncharacterized conser 96.0 0.00025 5.4E-09 69.8 -5.8 16 239-254 85-100 (388)
69 KOG2123 Uncharacterized conser 95.9 0.00052 1.1E-08 67.6 -4.3 58 92-154 18-75 (388)
70 PF00560 LRR_1: Leucine Rich R 95.8 0.0038 8.3E-08 36.5 0.9 19 791-810 2-20 (22)
71 KOG1947 Leucine rich repeat pr 95.7 0.0013 2.9E-08 75.9 -2.8 35 117-151 187-223 (482)
72 KOG1947 Leucine rich repeat pr 95.6 0.0023 5E-08 73.9 -1.2 177 90-277 185-373 (482)
73 PF00560 LRR_1: Leucine Rich R 95.5 0.0051 1.1E-07 36.0 0.5 20 767-787 2-21 (22)
74 KOG4308 LRR-containing protein 94.8 0.00047 1E-08 77.1 -9.7 186 468-686 89-303 (478)
75 KOG4308 LRR-containing protein 94.1 0.00061 1.3E-08 76.2 -10.7 166 526-691 89-280 (478)
76 PF13504 LRR_7: Leucine rich r 92.0 0.09 2E-06 28.4 1.2 11 767-777 3-13 (17)
77 KOG0473 Leucine-rich repeat pr 91.7 0.012 2.6E-07 56.7 -4.1 83 56-154 41-123 (326)
78 PF13504 LRR_7: Leucine rich r 91.3 0.12 2.7E-06 27.9 1.2 13 790-802 2-14 (17)
79 KOG0473 Leucine-rich repeat pr 91.1 0.0088 1.9E-07 57.7 -5.7 84 740-826 41-124 (326)
80 smart00369 LRR_TYP Leucine-ric 87.7 0.41 8.9E-06 29.2 1.8 14 789-802 2-15 (26)
81 smart00370 LRR Leucine-rich re 87.7 0.41 8.9E-06 29.2 1.8 14 789-802 2-15 (26)
82 smart00370 LRR Leucine-rich re 87.3 0.55 1.2E-05 28.7 2.2 21 624-645 2-22 (26)
83 smart00369 LRR_TYP Leucine-ric 87.3 0.55 1.2E-05 28.7 2.2 21 624-645 2-22 (26)
84 KOG3864 Uncharacterized conser 83.8 0.18 3.9E-06 48.1 -1.7 84 243-326 102-186 (221)
85 PF13516 LRR_6: Leucine Rich r 83.7 0.23 5E-06 29.7 -0.7 15 789-803 2-16 (24)
86 KOG3864 Uncharacterized conser 78.7 0.35 7.6E-06 46.3 -1.8 34 218-251 151-185 (221)
87 smart00365 LRR_SD22 Leucine-ri 73.8 2.6 5.6E-05 25.8 1.7 15 788-802 1-15 (26)
88 smart00364 LRR_BAC Leucine-ric 70.9 2.9 6.3E-05 25.5 1.4 13 766-778 3-15 (26)
89 KOG4242 Predicted myosin-I-bin 68.5 12 0.00025 41.0 6.2 21 466-486 165-185 (553)
90 smart00368 LRR_RI Leucine rich 61.2 6.2 0.00013 24.6 1.6 14 789-802 2-15 (28)
91 KOG4242 Predicted myosin-I-bin 49.6 55 0.0012 36.1 7.3 35 744-778 416-453 (553)
92 PF04478 Mid2: Mid2 like cell 47.1 14 0.00029 33.8 2.1 36 883-918 50-85 (154)
93 PF15102 TMEM154: TMEM154 prot 46.3 25 0.00054 32.0 3.6 17 895-911 72-88 (146)
94 TIGR00864 PCC polycystin catio 44.8 12 0.00026 50.3 2.0 34 771-804 1-34 (2740)
95 KOG3763 mRNA export factor TAP 41.4 17 0.00036 40.8 2.0 66 192-257 216-285 (585)
96 KOG3763 mRNA export factor TAP 39.3 14 0.00031 41.3 1.2 64 739-804 216-285 (585)
97 PF08693 SKG6: Transmembrane a 37.7 26 0.00057 24.0 1.8 21 883-903 13-33 (40)
98 smart00367 LRR_CC Leucine-rich 35.0 27 0.00058 21.2 1.4 15 291-305 2-16 (26)
99 PF01102 Glycophorin_A: Glycop 32.1 16 0.00035 32.3 0.2 21 884-904 66-86 (122)
100 PTZ00382 Variant-specific surf 23.7 40 0.00088 28.6 1.1 9 884-892 68-76 (96)
101 TIGR00864 PCC polycystin catio 23.7 43 0.00093 45.6 1.8 32 747-778 1-32 (2740)
102 PHA02707 hypothetical protein; 22.1 33 0.00071 21.6 0.2 7 1-7 1-7 (37)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-69 Score=676.21 Aligned_cols=583 Identities=36% Similarity=0.584 Sum_probs=395.5
Q ss_pred CHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCcCccceEecCCCCcEEEEEcCCCCCCCchhhhcccccceeecccccCc
Q 002360 13 IESEREALLKLKHDLRDPSHRLASWIGDNGDCCKWGGVLCGNFTGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLEL 92 (931)
Q Consensus 13 ~~~~~~~ll~~k~~~~d~~~~l~~w~~~~~~~c~w~g~~c~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l 92 (931)
.++|++||++||.++.||...+++|. .+.+||.|.|++|++ .++|++|+++++ .+.|.++.++..+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~-~~~~~c~w~gv~c~~-~~~v~~L~L~~~------------~i~~~~~~~~~~l 92 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWN-SSADVCLWQGITCNN-SSRVVSIDLSGK------------NISGKISSAIFRL 92 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCC-CCCCCCcCcceecCC-CCcEEEEEecCC------------CccccCChHHhCC
Confidence 56899999999999988888899998 678999999999985 579999999986 6777888888888
Q ss_pred cCCcEeeCCCCCCCCCCchhhhh-cCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCCC
Q 002360 93 KHLVHLDLSGNDFQGIQIPKYLA-SLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLE 171 (931)
Q Consensus 93 ~~L~~L~Ls~n~~~~~~l~~~l~-~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~ 171 (931)
++|++|+|++|.+.+. +|..+. .+++|++|+|++|.+++.+|. +.+++|++|+|++|.+
T Consensus 93 ~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~----------------- 152 (968)
T PLN00113 93 PYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNML----------------- 152 (968)
T ss_pred CCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcc-----------------
Confidence 8999999988888764 666544 888888888888888766664 3455555555554433
Q ss_pred eEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcCC
Q 002360 172 HLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYS 251 (931)
Q Consensus 172 ~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 251 (931)
.+..+..+.++++|++|++++|.+.+.+|..++++++|++|++++
T Consensus 153 -----------------------------------~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 197 (968)
T PLN00113 153 -----------------------------------SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197 (968)
T ss_pred -----------------------------------cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccC
Confidence 222222333444444444444444444444444444444444444
Q ss_pred CcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEEcCCCcCCCc
Q 002360 252 NQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQD 331 (931)
Q Consensus 252 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 331 (931)
|.+.+..|..++.+++|++|++++|.+.+.+|.. ++.+++|++|++++| .+.+.+|..++++++|+
T Consensus 198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~------------ 263 (968)
T PLN00113 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYN-NLTGPIPSSLGNLKNLQ------------ 263 (968)
T ss_pred CCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCc-eeccccChhHhCCCCCC------------
Confidence 4444444444444444444444444444333333 334444444444444 33333333344433333
Q ss_pred chhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcCCCccch
Q 002360 332 ISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSE 411 (931)
Q Consensus 332 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 411 (931)
+|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.++.
T Consensus 264 -----------------~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~ 326 (968)
T PLN00113 264 -----------------YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326 (968)
T ss_pred -----------------EEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence 333444444444444444555555555555555555555555555666666655555433322
Q ss_pred hhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccc
Q 002360 412 IHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIF 491 (931)
Q Consensus 412 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 491 (931)
.+..+++|+.|++++|.+.+.+|..+..
T Consensus 327 -------------------------------------------------~~~~l~~L~~L~L~~n~l~~~~p~~l~~--- 354 (968)
T PLN00113 327 -------------------------------------------------ALTSLPRLQVLQLWSNKFSGEIPKNLGK--- 354 (968)
T ss_pred -------------------------------------------------hHhcCCCCCEEECcCCCCcCcCChHHhC---
Confidence 1222333334444444433333322211
Q ss_pred cceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCc
Q 002360 492 QYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDC 571 (931)
Q Consensus 492 ~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 571 (931)
+++|+.|++++|++++.+|..
T Consensus 355 -----------------------------------------------------------~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 355 -----------------------------------------------------------HNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred -----------------------------------------------------------CCCCcEEECCCCeeEeeCChh
Confidence 234555555555555555656
Q ss_pred ccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcC
Q 002360 572 WMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRL 651 (931)
Q Consensus 572 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L 651 (931)
+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++..|..+..++.|+.|++++|.+++.+|..+. .+++|
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L 454 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSL 454 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCC
Confidence 66666666667777766666666666677777777777777766777777777777777777777766666655 57777
Q ss_pred cEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeec
Q 002360 652 MILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKG 731 (931)
Q Consensus 652 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (931)
+.|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+.+++.|
T Consensus 455 ~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L-------------------------------- 501 (968)
T PLN00113 455 QMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL-------------------------------- 501 (968)
T ss_pred cEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhcc--------------------------------
Confidence 777777777777777654 35788999999999998888877766655
Q ss_pred chhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccC
Q 002360 732 FLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN 811 (931)
Q Consensus 732 ~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~ 811 (931)
+.|+|++|++++.+|..++++++|++|+|++|.++|.+|..++.+++|+.|||++|++++.+|..+.+
T Consensus 502 ------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 569 (968)
T PLN00113 502 ------------MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN 569 (968)
T ss_pred ------------CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeCCCccccccCCCCCccCcccccccCCC-CCCCCC
Q 002360 812 LSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGN-DLCGAP 852 (931)
Q Consensus 812 l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~ 852 (931)
+++|++|++++|+++|.+|..+++.++...++.|| .+||.+
T Consensus 570 l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 570 VESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999999999999999999 799864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.8e-56 Score=557.71 Aligned_cols=514 Identities=30% Similarity=0.488 Sum_probs=375.3
Q ss_pred CCCEEEccCCcCCCCCcccccCCCCCCEEEcCCCccccccccccc-CCCCCCEEeccCCccccccCccccCCCCCccEEE
Q 002360 219 SLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLS-KLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLL 297 (931)
Q Consensus 219 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 297 (931)
+++.|++++|.+.+.++..+..+++|+.|++++|++.+.+|..+. .+++|++|++++|.+.+.+|. +.+++|++|+
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~ 146 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLD 146 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEE
Confidence 455555555555555555555555555555555555544443332 555555555555555544443 2345555555
Q ss_pred ccCCCCCcccCCcccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEecc
Q 002360 298 LSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLS 377 (931)
Q Consensus 298 L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 377 (931)
+++| .+.+.+|..++++++|+.|++++|.+.+.+|..++.+ ++|++|++++|.+.+.+|..++.+++|++|+++
T Consensus 147 Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 147 LSNN-MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL-----TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CcCC-cccccCChHHhcCCCCCEEECccCcccccCChhhhhC-----cCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 5555 5555555555555566666666555555555555544 556666666666655556566666666666666
Q ss_pred CCcCCcCccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCC
Q 002360 378 NNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPR 457 (931)
Q Consensus 378 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~ 457 (931)
+|.+.+.+|..++.+++|++|++++|.+++.+|. .+.++++|+.|++ ++|.+.+.
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L------------------------~~n~l~~~ 275 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFL------------------------YQNKLSGP 275 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCceeccccCh-hHhCCCCCCEEEC------------------------cCCeeecc
Confidence 6666666666666666666666666666555544 3444444333333 33333334
Q ss_pred cChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCc
Q 002360 458 FPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALS 537 (931)
Q Consensus 458 ~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~ 537 (931)
+|..+..+++|+.|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|.
T Consensus 276 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~---------------------------- 326 (968)
T PLN00113 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVI-QLQNLEILHLFSNNFTGKIPV---------------------------- 326 (968)
T ss_pred CchhHhhccCcCEEECcCCeeccCCChhHc-CCCCCcEEECCCCccCCcCCh----------------------------
Confidence 455555556666666666666555554442 244455555555544433331
Q ss_pred cccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccc
Q 002360 538 GSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIP 617 (931)
Q Consensus 538 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 617 (931)
. +..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+.+.+|
T Consensus 327 -----~----~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p 397 (968)
T PLN00113 327 -----A----LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397 (968)
T ss_pred -----h----HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCC
Confidence 1 1225789999999999999899999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccc
Q 002360 618 TSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFS 697 (931)
Q Consensus 618 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 697 (931)
..+..+++|+.|++++|++++.+|..+. .+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+. .
T Consensus 398 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~- 474 (968)
T PLN00113 398 KSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-S- 474 (968)
T ss_pred HHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-c-
Confidence 9999999999999999999999998876 799999999999999999999999999999999999999998887542 1
Q ss_pred cccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcC
Q 002360 698 AMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLF 777 (931)
Q Consensus 698 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 777 (931)
+.|+.||+++|++++.+|..+..+++|++|+|++|++
T Consensus 475 -------------------------------------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 511 (968)
T PLN00113 475 -------------------------------------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511 (968)
T ss_pred -------------------------------------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcc
Confidence 2358999999999999999999999999999999999
Q ss_pred cccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCCC-CccCcccccccCCCCCCC
Q 002360 778 TGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS-TQLQSFDASSFAGNDLCG 850 (931)
Q Consensus 778 ~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~l~~ 850 (931)
++.+|..++.+++|++|++++|.+++.+|..+..+++|+.||+++|+++|.+|.. ..+..+...++++|.+.|
T Consensus 512 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 512 SGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred eeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 9999999999999999999999999999999999999999999999999999975 456667778888886654
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-36 Score=315.29 Aligned_cols=228 Identities=22% Similarity=0.258 Sum_probs=128.6
Q ss_pred CEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEEcC
Q 002360 245 KHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMA 324 (931)
Q Consensus 245 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 324 (931)
+.|++++|.+....+..|.++++|+.+++..|.++ .||.. .+...+|+.|+|.+| .++..-.+.+..++.|+.++++
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f-~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRF-GHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccc-cccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhh
Confidence 33444444444444444444444444444444443 34432 222233444444444 3333333334444444444444
Q ss_pred CCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCc
Q 002360 325 STKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNK 404 (931)
Q Consensus 325 ~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 404 (931)
.|.++......+..- .++++|+|++|.|+..-...|..+.+|..|.|+.|.++...+..|..+++|+.|+|..|.
T Consensus 158 rN~is~i~~~sfp~~-----~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAK-----VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hchhhcccCCCCCCC-----CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 444433222222221 456677777777766666666777777777777777775555666667777777777777
Q ss_pred CCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCC
Q 002360 405 LNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDK 481 (931)
Q Consensus 405 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~ 481 (931)
|. .+....|.++++|+.+.+..|.+....+..|..+.++++|+|..|++...-.+|+.++++|+.|++|+|.|..+
T Consensus 233 ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri 308 (873)
T KOG4194|consen 233 IR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI 308 (873)
T ss_pred ee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee
Confidence 64 34344666677777777777766666666666666666666666666666666666666666666666666543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5e-36 Score=312.43 Aligned_cols=373 Identities=21% Similarity=0.203 Sum_probs=298.2
Q ss_pred cCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcCCCccchhhhccccccceec
Q 002360 345 YELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFL 424 (931)
Q Consensus 345 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 424 (931)
+.-+.|++++|.+..+-+..|.++++|+++.+.+|.++ .+|...+...+|+.|+|.+|.|+ .+....++.++.|+.++
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhh
Confidence 55678999999998888888899999999999999988 67765555666999999999987 55555889999999999
Q ss_pred cCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccc
Q 002360 425 ANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIY 504 (931)
Q Consensus 425 l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~ 504 (931)
++.|.+.....+.|..-.++++|+|++|.++..-...|..+.+|..|.|++|+|+. +|...|..+++|+.|+|..|++.
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc-cCHHHhhhcchhhhhhcccccee
Confidence 99999999888888888899999999999998888889999999999999999985 56666666888888888888774
Q ss_pred cCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecC
Q 002360 505 GGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLG 584 (931)
Q Consensus 505 ~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 584 (931)
-.- .-.+..+++|+.|.|..|.+...-...|..+.++++|+|+
T Consensus 235 ive-------------------------------------~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~ 277 (873)
T KOG4194|consen 235 IVE-------------------------------------GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLE 277 (873)
T ss_pred eeh-------------------------------------hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecc
Confidence 110 0012236788889999999988778888889999999999
Q ss_pred CCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCcccccc
Q 002360 585 NNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGD 664 (931)
Q Consensus 585 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 664 (931)
.|++...-..++-++++|+.|++++|.|..+-++++..+++|++|+|++|+++ .+++.-+..+.+|++|+|++|.+...
T Consensus 278 ~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l 356 (873)
T KOG4194|consen 278 TNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHL 356 (873)
T ss_pred cchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHH
Confidence 99998777788888999999999999999888888888999999999999998 67776666788999999999998877
Q ss_pred CCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhcccee
Q 002360 665 FPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVR 744 (931)
Q Consensus 665 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 744 (931)
-...|..+++|+.|||++|.+++.+-+.-.-.. .++.|+
T Consensus 357 ~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~-----------------------------------------gl~~Lr 395 (873)
T KOG4194|consen 357 AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN-----------------------------------------GLPSLR 395 (873)
T ss_pred HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc-----------------------------------------cchhhh
Confidence 777888889999999999998876654211111 134456
Q ss_pred EEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCc
Q 002360 745 SIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQ 800 (931)
Q Consensus 745 ~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~ 800 (931)
.|+|.+|++....-..|.++..|++|||.+|.|....|.+|..| .|+.|-+..-.
T Consensus 396 kL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSss 450 (873)
T KOG4194|consen 396 KLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSS 450 (873)
T ss_pred heeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccc
Confidence 77777777775555667777777777777777776777777776 66666655433
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.3e-39 Score=321.11 Aligned_cols=480 Identities=25% Similarity=0.366 Sum_probs=286.1
Q ss_pred CCCCEEEccCCcCCCCCcccccCCCCCCEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEE
Q 002360 218 SSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLL 297 (931)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 297 (931)
..|+.+.+++|.+. .+.+.+.++..|.+|++.+|++.. .|.+++.+..++.++.++|+++ .+|.. ++.+.++..++
T Consensus 45 v~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~-i~s~~~l~~l~ 120 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQ-IGSLISLVKLD 120 (565)
T ss_pred cchhhhhhccCchh-hccHhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHH-Hhhhhhhhhhh
Confidence 44555555555554 223335555555555555555533 3444555555555555555554 44444 55555555555
Q ss_pred ccCCCCCcccCCcccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEecc
Q 002360 298 LSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLS 377 (931)
Q Consensus 298 L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 377 (931)
.++| .+. .+|+.++.+..+..++..+|+++.. |+.+..+ .++..+++.+|++....|.-+. ++.|++||..
T Consensus 121 ~s~n-~~~-el~~~i~~~~~l~dl~~~~N~i~sl-p~~~~~~-----~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~ 191 (565)
T KOG0472|consen 121 CSSN-ELK-ELPDSIGRLLDLEDLDATNNQISSL-PEDMVNL-----SKLSKLDLEGNKLKALPENHIA-MKRLKHLDCN 191 (565)
T ss_pred cccc-cee-ecCchHHHHhhhhhhhccccccccC-chHHHHH-----HHHHHhhccccchhhCCHHHHH-HHHHHhcccc
Confidence 5555 322 3444555555555555555555533 2333333 4566666666666655554444 6777777777
Q ss_pred CCcCCcCccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCC
Q 002360 378 NNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPR 457 (931)
Q Consensus 378 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~ 457 (931)
.|.+. .+|..++.+.+|+.|++..|++. .+| .|.+|..|+++.+..|.+. .
T Consensus 192 ~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~-------------------------~ 242 (565)
T KOG0472|consen 192 SNLLE-TLPPELGGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIE-------------------------M 242 (565)
T ss_pred hhhhh-cCChhhcchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHH-------------------------h
Confidence 76665 56667777777777777777765 333 3455555544444444332 2
Q ss_pred cCh-hhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCC
Q 002360 458 FPL-WLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNAL 536 (931)
Q Consensus 458 ~~~-~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l 536 (931)
+|. ...++.++..||+.+|++.. .|....- +.+|++||+|+|.+++-.
T Consensus 243 lpae~~~~L~~l~vLDLRdNklke-~Pde~cl-LrsL~rLDlSNN~is~Lp----------------------------- 291 (565)
T KOG0472|consen 243 LPAEHLKHLNSLLVLDLRDNKLKE-VPDEICL-LRSLERLDLSNNDISSLP----------------------------- 291 (565)
T ss_pred hHHHHhcccccceeeecccccccc-CchHHHH-hhhhhhhcccCCccccCC-----------------------------
Confidence 222 22355566666666666653 3333221 334444444444443221
Q ss_pred ccccchhhhccCCCCCCccEEECcCCccccccCCcccC-----CCCCCE----EecCCCcc---e-ec-CCC---cccCC
Q 002360 537 SGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMN-----WPRLRT----LNLGNNNF---T-GS-LPM---SIGTL 599 (931)
Q Consensus 537 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~----L~Ls~n~l---~-~~-~p~---~~~~l 599 (931)
..++++ .|+.|.+.+|.+..+-.+.+.+ ++.|+. =-++.-.- + +. .+. ....+
T Consensus 292 ---------~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~ 361 (565)
T KOG0472|consen 292 ---------YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAI 361 (565)
T ss_pred ---------cccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhh
Confidence 223334 5666666666654321111110 001110 00000000 0 00 011 12234
Q ss_pred CCCCEEEccCCcCccccchhhccCC--CCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCE
Q 002360 600 TSLRSLNLRNNRLSGVIPTSFKNFS--ILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQI 677 (931)
Q Consensus 600 ~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 677 (931)
.+.+.|++++-+++.+..+.|...+ -....+++.|++. .+|..+. .+..+...-+.+|+..+.+|..++.+++|..
T Consensus 362 i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~-~lkelvT~l~lsnn~isfv~~~l~~l~kLt~ 439 (565)
T KOG0472|consen 362 ITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLV-ELKELVTDLVLSNNKISFVPLELSQLQKLTF 439 (565)
T ss_pred hhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhH-HHHHHHHHHHhhcCccccchHHHHhhhccee
Confidence 5778888888888855444444332 3778899999987 7888776 4555544433444444478888899999999
Q ss_pred EEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccC
Q 002360 678 LDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEI 757 (931)
Q Consensus 678 L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~i 757 (931)
|+|++|.+. .+|..++.+..| +.||+|+|+|. .+
T Consensus 440 L~L~NN~Ln-~LP~e~~~lv~L--------------------------------------------q~LnlS~NrFr-~l 473 (565)
T KOG0472|consen 440 LDLSNNLLN-DLPEEMGSLVRL--------------------------------------------QTLNLSFNRFR-ML 473 (565)
T ss_pred eecccchhh-hcchhhhhhhhh--------------------------------------------heecccccccc-cc
Confidence 999888876 778777766555 88999999998 88
Q ss_pred CccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCC
Q 002360 758 PVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS 831 (931)
Q Consensus 758 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 831 (931)
|+.+-.+..++.+-.++|++....|+.+.+|.+|..|||.+|.+. .||..++++++|+.|++++|++. .|.
T Consensus 474 P~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr 544 (565)
T KOG0472|consen 474 PECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPR 544 (565)
T ss_pred hHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCH
Confidence 988888888888888889998666666999999999999999998 78889999999999999999997 454
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.1e-39 Score=321.26 Aligned_cols=498 Identities=25% Similarity=0.359 Sum_probs=270.6
Q ss_pred ccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCC
Q 002360 89 LLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLS 168 (931)
Q Consensus 89 l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~ 168 (931)
...-.-+..|++++|.+.. +.+.+.++..|.+|++++|.++ .+|.+++.+..++.|+.++|.+..+|+.+ ..+.
T Consensus 41 wW~qv~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~i---~s~~ 114 (565)
T KOG0472|consen 41 WWEQVDLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQI---GSLI 114 (565)
T ss_pred hhhhcchhhhhhccCchhh--ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHHH---hhhh
Confidence 3445567788888888873 4667888888888888888887 78888888888888888888887777654 4455
Q ss_pred CCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEE
Q 002360 169 LLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLD 248 (931)
Q Consensus 169 ~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 248 (931)
.|+++++++|.+...++. ++.+..|..++..+|+++..++ ++..+.+|..+++.+|.+....|..+ .++.|++|+
T Consensus 115 ~l~~l~~s~n~~~el~~~---i~~~~~l~dl~~~~N~i~slp~-~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld 189 (565)
T KOG0472|consen 115 SLVKLDCSSNELKELPDS---IGRLLDLEDLDATNNQISSLPE-DMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLD 189 (565)
T ss_pred hhhhhhccccceeecCch---HHHHhhhhhhhccccccccCch-HHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcc
Confidence 555566666655554432 3344455555555555555444 33444455555555555553322222 255555555
Q ss_pred cCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEEcCCCcC
Q 002360 249 LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKL 328 (931)
Q Consensus 249 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l 328 (931)
...|.+ +.+|..++.+.+|+.|++..|++. .+| .|+++..|++++++.|.+
T Consensus 190 ~~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~-~lP---------------------------ef~gcs~L~Elh~g~N~i 240 (565)
T KOG0472|consen 190 CNSNLL-ETLPPELGGLESLELLYLRRNKIR-FLP---------------------------EFPGCSLLKELHVGENQI 240 (565)
T ss_pred cchhhh-hcCChhhcchhhhHHHHhhhcccc-cCC---------------------------CCCccHHHHHHHhcccHH
Confidence 555544 223444555555555555555443 333 344444444444444444
Q ss_pred CCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcCCCc
Q 002360 329 SQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGT 408 (931)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 408 (931)
.-...+....+ +++..||+.+|+++ ..|..+..+++|.+||+++|.++ ..|..++++ .|+.|.+.+|.+. .
T Consensus 241 ~~lpae~~~~L-----~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-T 311 (565)
T KOG0472|consen 241 EMLPAEHLKHL-----NSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-T 311 (565)
T ss_pred HhhHHHHhccc-----ccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-H
Confidence 32222222233 55666666666663 34555556666677777777666 445566666 6666666666654 2
Q ss_pred cchhhhccccc--cceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhH
Q 002360 409 VSEIHFVNLTK--LVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAF 486 (931)
Q Consensus 409 ~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~ 486 (931)
+....+..-+. |++| +. .+..-+++
T Consensus 312 iRr~ii~~gT~~vLKyL---------------------------------------------rs-~~~~dglS------- 338 (565)
T KOG0472|consen 312 IRREIISKGTQEVLKYL---------------------------------------------RS-KIKDDGLS------- 338 (565)
T ss_pred HHHHHHcccHHHHHHHH---------------------------------------------HH-hhccCCCC-------
Confidence 21111110000 0000 00 00000000
Q ss_pred HhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCcccc
Q 002360 487 WNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSE 566 (931)
Q Consensus 487 ~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 566 (931)
.- -.|..... +. +...........+.+.|++++-+++.
T Consensus 339 -------------~s-e~~~e~~~-------------------t~---------~~~~~~~~~~~i~tkiL~~s~~qlt~ 376 (565)
T KOG0472|consen 339 -------------QS-EGGTETAM-------------------TL---------PSESFPDIYAIITTKILDVSDKQLTL 376 (565)
T ss_pred -------------CC-cccccccC-------------------CC---------CCCcccchhhhhhhhhhccccccccc
Confidence 00 00000000 00 00000000011234445555544444
Q ss_pred ccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcE-EecCCCcccccCchhHH
Q 002360 567 GIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEA-LDVGENELVGSIPTWIG 645 (931)
Q Consensus 567 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~-L~L~~N~l~~~~p~~~~ 645 (931)
+..+.|... . -.-....++++|++. .+|..+..++.+.+ +++++|.+. .+|..+.
T Consensus 377 VPdEVfea~-~---------------------~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~ 432 (565)
T KOG0472|consen 377 VPDEVFEAA-K---------------------SEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELS 432 (565)
T ss_pred CCHHHHHHh-h---------------------hcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHH
Confidence 222222211 1 011334445555544 34444444433332 344444443 5555554
Q ss_pred hhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccce
Q 002360 646 ERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDT 725 (931)
Q Consensus 646 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (931)
.+++|..|+|++|.+. .+|..++.+..||.||+|.|+|. .+|.++..+..+
T Consensus 433 -~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l-------------------------- 483 (565)
T KOG0472|consen 433 -QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL-------------------------- 483 (565)
T ss_pred -hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH--------------------------
Confidence 5677777777766665 56777777777888888888776 666665544433
Q ss_pred eEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCc
Q 002360 726 SLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS 802 (931)
Q Consensus 726 ~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~ 802 (931)
+.+-.++|++....|..+.++..|.+|||.+|.+. .||..+++|++|++|++++|++.
T Consensus 484 ------------------Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 484 ------------------ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ------------------HHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 34445667777555555888899999999999988 88888999999999999999987
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-35 Score=325.71 Aligned_cols=243 Identities=26% Similarity=0.396 Sum_probs=187.9
Q ss_pred ccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEE
Q 002360 526 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSL 605 (931)
Q Consensus 526 l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 605 (931)
++++|+++|++++. |++++. +.+|+.++..+|+++. +|..+...++|+.|.+..|.+. .+|....+.++|++|
T Consensus 243 l~~~dis~n~l~~l-p~wi~~----~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 243 LQYLDISHNNLSNL-PEWIGA----CANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTL 315 (1081)
T ss_pred ceeeecchhhhhcc-hHHHHh----cccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeee
Confidence 34444444444432 244433 7889999999999965 6777777889999999999988 677778888999999
Q ss_pred EccCCcCccccchhhccCCC-CcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCc
Q 002360 606 NLRNNRLSGVIPTSFKNFSI-LEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNS 684 (931)
Q Consensus 606 ~L~~n~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 684 (931)
+|..|++....+..+.-... |+.|..+.|++. ..|..-....+.|+.|.+.+|.++...-..+.++++|+.|+|++|+
T Consensus 316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred eehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 99999998544444444433 788888888887 6665444567789999999999998876778889999999999999
Q ss_pred cccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCC
Q 002360 685 LLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNL 764 (931)
Q Consensus 685 l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l 764 (931)
+......++.++..| +.|+||+|+++ .+|..+..+
T Consensus 395 L~~fpas~~~kle~L--------------------------------------------eeL~LSGNkL~-~Lp~tva~~ 429 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEEL--------------------------------------------EELNLSGNKLT-TLPDTVANL 429 (1081)
T ss_pred cccCCHHHHhchHHh--------------------------------------------HHHhcccchhh-hhhHHHHhh
Confidence 974433455555544 78999999998 788999999
Q ss_pred CCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccC-cccccCCCCCCeeeCCCcc
Q 002360 765 QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI-PQSMSNLSFLNYLNLSNNN 824 (931)
Q Consensus 765 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~-p~~l~~l~~L~~L~ls~N~ 824 (931)
..|++|...+|++. ..| .+..+++|+.+|+|.|+|+... |..... ++|++||+++|.
T Consensus 430 ~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 99999999999998 777 6899999999999999998653 443333 889999999996
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=4.8e-34 Score=314.11 Aligned_cols=498 Identities=27% Similarity=0.341 Sum_probs=281.0
Q ss_pred eeecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCcc
Q 002360 83 GKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETIS 162 (931)
Q Consensus 83 ~~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~ 162 (931)
..||..+..-.++..|+++.|-+-..+ -+++.+..+|+.||+++|.+. ..|..+..+.+|+.|+++.|.|..+|..
T Consensus 11 ~~ip~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~vp~s-- 86 (1081)
T KOG0618|consen 11 ELIPEQILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSVPSS-- 86 (1081)
T ss_pred cccchhhccHHHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhCchh--
Confidence 345555555555677777777665432 234444555777777777766 6677777777777777777777777643
Q ss_pred ccCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCC
Q 002360 163 WLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLT 242 (931)
Q Consensus 163 ~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 242 (931)
..++.+|+++.|..|.+...|. .+..+.+|+.|++++|.+..+|. .+..+..++.++.++|..... ++...
T Consensus 87 -~~~~~~l~~lnL~~n~l~~lP~---~~~~lknl~~LdlS~N~f~~~Pl-~i~~lt~~~~~~~s~N~~~~~----lg~~~ 157 (1081)
T KOG0618|consen 87 -CSNMRNLQYLNLKNNRLQSLPA---SISELKNLQYLDLSFNHFGPIPL-VIEVLTAEEELAASNNEKIQR----LGQTS 157 (1081)
T ss_pred -hhhhhcchhheeccchhhcCch---hHHhhhcccccccchhccCCCch-hHHhhhHHHHHhhhcchhhhh----hcccc
Confidence 4667777777777777666654 34566777777777777766665 455566667777777722212 22222
Q ss_pred CCCEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEE
Q 002360 243 SLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFS 322 (931)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 322 (931)
++.+++..|.+.+.++..+..++. .|+|.+|.+. .. .+.++.+|+.|....| . |..+.
T Consensus 158 -ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~---dls~~~~l~~l~c~rn-~--------------ls~l~ 215 (1081)
T KOG0618|consen 158 -IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL---DLSNLANLEVLHCERN-Q--------------LSELE 215 (1081)
T ss_pred -chhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh---hhhhccchhhhhhhhc-c--------------cceEE
Confidence 677777777777766666666655 6777777664 11 1556666666666655 2 12222
Q ss_pred cCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccC
Q 002360 323 MASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSN 402 (931)
Q Consensus 323 l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 402 (931)
+.+ ++++.|+..+|.++...+. ..-.+|++++++.|.+. .+|++++.+++|+.+++.+
T Consensus 216 ~~g-------------------~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 216 ISG-------------------PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANH 273 (1081)
T ss_pred ecC-------------------cchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccc
Confidence 211 5566666666666533221 12346777777777776 4456777777777777777
Q ss_pred CcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCc
Q 002360 403 NKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKI 482 (931)
Q Consensus 403 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~ 482 (931)
|.++ .+|. .+...++|+.+....|.+. .+|......+.|+.|++..|.+.. .
T Consensus 274 N~l~-~lp~-ri~~~~~L~~l~~~~nel~-------------------------yip~~le~~~sL~tLdL~~N~L~~-l 325 (1081)
T KOG0618|consen 274 NRLV-ALPL-RISRITSLVSLSAAYNELE-------------------------YIPPFLEGLKSLRTLDLQSNNLPS-L 325 (1081)
T ss_pred hhHH-hhHH-HHhhhhhHHHHHhhhhhhh-------------------------hCCCcccccceeeeeeehhccccc-c
Confidence 7774 3443 3444555555555554433 234444455666666666666653 3
Q ss_pred chhHHhccc-cceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcC
Q 002360 483 PRAFWNSIF-QYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLST 561 (931)
Q Consensus 483 ~~~~~~~~~-~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~ 561 (931)
|..++.... ++..|+.+.|++... |.... ...+.++.+.+.+|.+++.....+ .+.+.|+.|+|++
T Consensus 326 p~~~l~v~~~~l~~ln~s~n~l~~l-p~~~e--------~~~~~Lq~LylanN~Ltd~c~p~l----~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 326 PDNFLAVLNASLNTLNVSSNKLSTL-PSYEE--------NNHAALQELYLANNHLTDSCFPVL----VNFKHLKVLHLSY 392 (1081)
T ss_pred chHHHhhhhHHHHHHhhhhcccccc-ccccc--------hhhHHHHHHHHhcCcccccchhhh----ccccceeeeeecc
Confidence 333333322 255555555555311 10000 011344455555555554433322 2245666666666
Q ss_pred CccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCccccc-C
Q 002360 562 NHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGS-I 640 (931)
Q Consensus 562 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~ 640 (931)
|++.......+.++..|++|+||+|+++ .+|..+..+..|++|...+|++. ..| .+..++.|+.+|++.|+++.. +
T Consensus 393 NrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l 469 (1081)
T KOG0618|consen 393 NRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTL 469 (1081)
T ss_pred cccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhh
Confidence 6666555555666666666666666666 55566666666666666666665 444 556666666666666666522 2
Q ss_pred chhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCC
Q 002360 641 PTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYN 683 (931)
Q Consensus 641 p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 683 (931)
|... .-++|++||+++|.-...-...+..+..+...++.-|
T Consensus 470 ~~~~--p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 470 PEAL--PSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhC--CCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 2211 1256666666666532222233444455555555444
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.1e-31 Score=279.51 Aligned_cols=386 Identities=24% Similarity=0.364 Sum_probs=240.8
Q ss_pred CCCCccEEEccCCCCCc-ccCCcccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCC
Q 002360 289 NLTSIQKLLLSWNDELG-GKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQ 367 (931)
Q Consensus 289 ~l~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 367 (931)
-++-.+-.++++| .++ +..|.....+++++.|.+...++. .+|+.++.+ .+|++|.+.+|++.... ..+..
T Consensus 5 VLpFVrGvDfsgN-DFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~l-----qkLEHLs~~HN~L~~vh-GELs~ 76 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGN-DFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRL-----QKLEHLSMAHNQLISVH-GELSD 76 (1255)
T ss_pred ccceeecccccCC-cCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHH-----hhhhhhhhhhhhhHhhh-hhhcc
Confidence 4555566677777 554 466666667777777766666554 345555555 56666666666654322 23455
Q ss_pred CCCCCEEeccCCcCCc-CccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccE
Q 002360 368 FKRLNFLGLSNNQMDG-SIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTV 446 (931)
Q Consensus 368 l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 446 (931)
++.|+.+++..|++.. -+|..+-.+..|+.|||++|++.
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~---------------------------------------- 116 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR---------------------------------------- 116 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh----------------------------------------
Confidence 6666666666665532 24445555666666666666654
Q ss_pred EEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccc
Q 002360 447 LELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLG 526 (931)
Q Consensus 447 L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l 526 (931)
..|..+..-+++-.|+||+|+|. .+|..++-++..|-+||||+|++....|.
T Consensus 117 ----------EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ----------------- 168 (1255)
T KOG0444|consen 117 ----------EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQ----------------- 168 (1255)
T ss_pred ----------hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHH-----------------
Confidence 33444455566667777777775 46666666666777777777766432221
Q ss_pred cEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcce-ecCCCcccCCCCCCEE
Q 002360 527 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFT-GSLPMSIGTLTSLRSL 605 (931)
Q Consensus 527 ~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L 605 (931)
...+..|++|+|++|.+...--..+..+++|++|.+++.+-+ .-+|.++..+.+|..+
T Consensus 169 ---------------------~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dv 227 (1255)
T KOG0444|consen 169 ---------------------IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDV 227 (1255)
T ss_pred ---------------------HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhc
Confidence 112345666666666554433334445566666666666544 2366666677777777
Q ss_pred EccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCcc
Q 002360 606 NLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSL 685 (931)
Q Consensus 606 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 685 (931)
+++.|.+. ..|+.+.++.+|+.|+||+|+++ .+..... ...+|+.|+++.|+++ .+|.+++.++.|+.|.+.+|++
T Consensus 228 DlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 228 DLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred cccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcc
Confidence 77777766 56677777777777777777776 4544444 3566777777777776 5677777777777777777776
Q ss_pred cc-ccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCC
Q 002360 686 LG-TIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNL 764 (931)
Q Consensus 686 ~~-~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l 764 (931)
.- -+|..++.+.+| +.+..++|.+. ..|+.+..+
T Consensus 304 ~FeGiPSGIGKL~~L--------------------------------------------evf~aanN~LE-lVPEglcRC 338 (1255)
T KOG0444|consen 304 TFEGIPSGIGKLIQL--------------------------------------------EVFHAANNKLE-LVPEGLCRC 338 (1255)
T ss_pred cccCCccchhhhhhh--------------------------------------------HHHHhhccccc-cCchhhhhh
Confidence 52 356666666555 44556667665 778888888
Q ss_pred CCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCC
Q 002360 765 QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLS 821 (931)
Q Consensus 765 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls 821 (931)
..|+.|.|++|++. .+|+.+.-|+.|+.||+..|.-....|.--..-++|+.-|+.
T Consensus 339 ~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 339 VKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred HHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 88888888888887 788888888888888888887553333221222455544443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=9.9e-31 Score=274.43 Aligned_cols=371 Identities=27% Similarity=0.383 Sum_probs=284.2
Q ss_pred CCCCCEEEccCCcCC-CCCcccccCCCCCCEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccE
Q 002360 217 FSSLTTLDLSGNQFQ-GQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQK 295 (931)
Q Consensus 217 l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 295 (931)
++-.+-.|+++|.++ +..|.....+++++.|.|...++. .+|..++.+.+|++|.+++|++. .+-.. +..++.|+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGE-Ls~Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGE-LSDLPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhh-hccchhhHH
Confidence 445566777888877 467788888888888888887774 45788888888888888888876 33333 778888888
Q ss_pred EEccCCCCCcccCCcccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEe
Q 002360 296 LLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLG 375 (931)
Q Consensus 296 L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 375 (931)
+.+..|..-...+|..+..+..|+.+++++|++.. .|..+... .++..|+|++|+|..+....|.+++.|-.||
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~LE~A-----Kn~iVLNLS~N~IetIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTNLEYA-----KNSIVLNLSYNNIETIPNSLFINLTDLLFLD 156 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhhh-cchhhhhh-----cCcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence 88888844456788888889999999999998874 45555554 7888999999999776666678889999999
Q ss_pred ccCCcCCcCccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCC-
Q 002360 376 LSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHL- 454 (931)
Q Consensus 376 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l- 454 (931)
|++|.+. .+|..+..+..|++|+|++|.+.- ..-..+..+++|+ +|.+++.+-
T Consensus 157 LS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~h-fQLrQLPsmtsL~------------------------vLhms~TqRT 210 (1255)
T KOG0444|consen 157 LSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNH-FQLRQLPSMTSLS------------------------VLHMSNTQRT 210 (1255)
T ss_pred cccchhh-hcCHHHHHHhhhhhhhcCCChhhH-HHHhcCccchhhh------------------------hhhcccccch
Confidence 9999988 667788888999999999998741 1111223333344 444444332
Q ss_pred CCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccC
Q 002360 455 GPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNN 534 (931)
Q Consensus 455 ~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n 534 (931)
...+|..+..+.+|..+|+|.|.+. ..|..++. +++|+.|+||+|+++..--
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~-l~~LrrLNLS~N~iteL~~-------------------------- 262 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK-LRNLRRLNLSGNKITELNM-------------------------- 262 (1255)
T ss_pred hhcCCCchhhhhhhhhccccccCCC-cchHHHhh-hhhhheeccCcCceeeeec--------------------------
Confidence 2357788888889999999998886 56666654 6788888888888762110
Q ss_pred CCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCccee-cCCCcccCCCCCCEEEccCCcCc
Q 002360 535 ALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTG-SLPMSIGTLTSLRSLNLRNNRLS 613 (931)
Q Consensus 535 ~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~ 613 (931)
..+...+|++|++|.|+++. +|+++++++.|+.|.+.+|+++- -+|..++.+..|+++..++|.+.
T Consensus 263 ------------~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE 329 (1255)
T KOG0444|consen 263 ------------TEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE 329 (1255)
T ss_pred ------------cHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc
Confidence 01124678999999999986 88999999999999999998873 37889999999999999999987
Q ss_pred cccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCC
Q 002360 614 GVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFP 666 (931)
Q Consensus 614 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p 666 (931)
..|+.+..|..|+.|.|+.|.+. ++|+.+- -++.|+.||+..|.-..-.|
T Consensus 330 -lVPEglcRC~kL~kL~L~~NrLi-TLPeaIH-lL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 330 -LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH-LLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred -cCchhhhhhHHHHHhccccccee-echhhhh-hcCCcceeeccCCcCccCCC
Confidence 78999999999999999999998 8998886 68999999999988653333
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=3.2e-26 Score=229.34 Aligned_cols=426 Identities=23% Similarity=0.201 Sum_probs=238.4
Q ss_pred cCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccC-CcCCCccchhhhcccccccee
Q 002360 345 YELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSN-NKLNGTVSEIHFVNLTKLVSF 423 (931)
Q Consensus 345 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L 423 (931)
+.-.+++|..|+|+.+.+.+|..+++|+.|||++|.|+.+.|.+|.++++|.+|.+.+ |+|+ .++...|.++..++.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999998888887 7776 7788899999999999
Q ss_pred ccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCC-CCcchhHHhccccceEEeccCcc
Q 002360 424 LANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRIS-DKIPRAFWNSIFQYYYLNVSGNQ 502 (931)
Q Consensus 424 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~-~~~~~~~~~~~~~L~~L~ls~n~ 502 (931)
.+..|.+.......+..++++..|.+.+|.+....-..+..+..++.+.+..|.+- +-.-.+... ++.-|.
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~--------~~a~~~ 217 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD--------DLAMNP 217 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh--------HHhhch
Confidence 99999888877777777777777777777776555556677777777777766632 111011000 000000
Q ss_pred cccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccC-CcccCCCCCCEE
Q 002360 503 IYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIP-DCWMNWPRLRTL 581 (931)
Q Consensus 503 l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L 581 (931)
+.. ..+....-..+.++++...-...+-.. ..++..=-.+.+...++.| .+|..+++|+.|
T Consensus 218 iet---------------sgarc~~p~rl~~~Ri~q~~a~kf~c~---~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~l 279 (498)
T KOG4237|consen 218 IET---------------SGARCVSPYRLYYKRINQEDARKFLCS---LESLPSRLSSEDFPDSICPAKCFKKLPNLRKL 279 (498)
T ss_pred hhc---------------ccceecchHHHHHHHhcccchhhhhhh---HHhHHHhhccccCcCCcChHHHHhhcccceEe
Confidence 000 000000000111111111100000000 0011110111222222222 356666677777
Q ss_pred ecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccc
Q 002360 582 NLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKF 661 (931)
Q Consensus 582 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l 661 (931)
+|++|+++++-+.+|.+...+++|+|..|++..+....|.+++.|++|+|.+|+|+..-| ..|+.+.+|..|++-.|.+
T Consensus 280 nlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~-~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 280 NLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP-GAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred ccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec-ccccccceeeeeehccCcc
Confidence 777777766666666666667777777776666655666666666666666666663333 3333566666666666665
Q ss_pred cccCCcccCCCCCcCEEEccCCccccccCccc--cccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhh
Q 002360 662 HGDFPIQLCRLASLQILDVAYNSLLGTIPRCI--NNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSI 739 (931)
Q Consensus 662 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (931)
...- .+..|.. .|..+.-. ..|+|- +.+..+..-+..+...... -.++......+..+..
T Consensus 359 ~CnC-----~l~wl~~-Wlr~~~~~-~~~~Cq~p~~~~~~~~~dv~~~~~~c~--------~~ee~~~~~s~~cP~~--- 420 (498)
T KOG4237|consen 359 NCNC-----RLAWLGE-WLRKKSVV-GNPRCQSPGFVRQIPISDVAFGDFRCG--------GPEELGCLTSSPCPPP--- 420 (498)
T ss_pred cCcc-----chHHHHH-HHhhCCCC-CCCCCCCCchhccccchhccccccccC--------CccccCCCCCCCCCCC---
Confidence 4221 0000000 11122211 122211 1111111111000000000 0000000000000000
Q ss_pred ccce-eEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCee
Q 002360 740 LNLV-RSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYL 818 (931)
Q Consensus 740 ~~~L-~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L 818 (931)
.+-+ +...-|++.++ .+|..+- ..-.+|++.+|.++ .+|+. .+.+| .+|+|+|+++..--..|.++++|.+|
T Consensus 421 c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tl 493 (498)
T KOG4237|consen 421 CTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTL 493 (498)
T ss_pred cchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhhee
Confidence 0011 11223444443 3443322 23457899999998 88886 67888 89999999987777889999999999
Q ss_pred eCCCc
Q 002360 819 NLSNN 823 (931)
Q Consensus 819 ~ls~N 823 (931)
-+|||
T Consensus 494 ilsyn 498 (498)
T KOG4237|consen 494 ILSYN 498 (498)
T ss_pred EEecC
Confidence 99987
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=6.3e-21 Score=237.84 Aligned_cols=347 Identities=20% Similarity=0.267 Sum_probs=182.7
Q ss_pred cccCCCCCCcEEEcCCCcC------CCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCc
Q 002360 310 TSFGKLCKLTSFSMASTKL------SQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDG 383 (931)
Q Consensus 310 ~~~~~l~~L~~L~l~~~~l------~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 383 (931)
..|.++++|+.|.+..+.. ...+|..+..++ .+|+.|++.++.+. .+|..+ ...+|+.|++.+|.+.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp----~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLP----PKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE- 624 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcC----cccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-
Confidence 3456666666666654422 112233332221 35666666666553 334444 3456666666666655
Q ss_pred CccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhh
Q 002360 384 SIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQ 463 (931)
Q Consensus 384 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~ 463 (931)
.++..+..+++|+.|+++++...+.+|. +..+++|+.|++++|.....+|..+.
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--------------------------ls~l~~Le~L~L~~c~~L~~lp~si~ 678 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD--------------------------LSMATNLETLKLSDCSSLVELPSSIQ 678 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc--------------------------cccCCcccEEEecCCCCccccchhhh
Confidence 3445555666666666666543333332 22234566666666665566777777
Q ss_pred ccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchh
Q 002360 464 LQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHL 543 (931)
Q Consensus 464 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~ 543 (931)
.+++|+.|++++|...+.+|... .+++|+.|++++|...+.+|..
T Consensus 679 ~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~--------------------------------- 723 (1153)
T PLN03210 679 YLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI--------------------------------- 723 (1153)
T ss_pred ccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---------------------------------
Confidence 77777777777765444444432 2344444544444322222110
Q ss_pred hhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccC
Q 002360 544 ICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNF 623 (931)
Q Consensus 544 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 623 (931)
.++|+.|++++|.+.. +|..+ .+++|+.|++.++... .++.. +....+..+...
T Consensus 724 -------~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~-~l~~~----------------~~~l~~~~~~~~ 777 (1153)
T PLN03210 724 -------STNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSE-KLWER----------------VQPLTPLMTMLS 777 (1153)
T ss_pred -------cCCcCeeecCCCcccc-ccccc-cccccccccccccchh-hcccc----------------ccccchhhhhcc
Confidence 2345555555555543 33322 3455555555443321 01000 011111112233
Q ss_pred CCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccC
Q 002360 624 SILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATAD 703 (931)
Q Consensus 624 ~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~ 703 (931)
++|+.|++++|...+.+|.++. ++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~----------- 844 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI----------- 844 (1153)
T ss_pred ccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-----------
Confidence 5566666666665556666654 56666666666665444555544 5666666666666544333321
Q ss_pred CCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCc
Q 002360 704 SSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPD 783 (931)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 783 (931)
...++.|+|++|.++ .+|..+..+++|++|+|++|+--..+|.
T Consensus 845 ------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 845 ------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred ------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 112356677777766 5666677777777777776333335666
Q ss_pred CccCcCCCCEEeccCCc
Q 002360 784 NIGVMRSIESLDFSANQ 800 (931)
Q Consensus 784 ~l~~l~~L~~LdLs~N~ 800 (931)
.+..+++|+.+++++|.
T Consensus 888 ~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 888 NISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccccccCCCeeecCCCc
Confidence 66677777777777664
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=9.5e-21 Score=236.25 Aligned_cols=316 Identities=21% Similarity=0.295 Sum_probs=185.3
Q ss_pred CCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccC
Q 002360 267 DLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYE 346 (931)
Q Consensus 267 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~ 346 (931)
+|+.|.+.++.+. .+|.. + ...+|++|++.++ .+. .++..+..+++|+.++++++.....+|. +..+ ++
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~-f-~~~~L~~L~L~~s-~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l-----~~ 658 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSN-F-RPENLVKLQMQGS-KLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMA-----TN 658 (1153)
T ss_pred ccEEEEecCCCCC-CCCCc-C-CccCCcEEECcCc-ccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccC-----Cc
Confidence 3555555555443 33332 2 3445555555554 332 2344445555566666655543334442 2222 67
Q ss_pred ccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccC
Q 002360 347 LESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLAN 426 (931)
Q Consensus 347 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 426 (931)
|++|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|++|++++|...+.+|.. .
T Consensus 659 Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~--------- 724 (1153)
T PLN03210 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----S--------- 724 (1153)
T ss_pred ccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----c---------
Confidence 7777777777666677777778888888888776555666544 6777888888777644333320 1
Q ss_pred CceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccC
Q 002360 427 ANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGG 506 (931)
Q Consensus 427 ~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 506 (931)
.+|+.|+++++.+. .+|..+ .+++|+.|++.++.... +.+.
T Consensus 725 ---------------~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~----------------------l~~~ 765 (1153)
T PLN03210 725 ---------------TNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEK----------------------LWER 765 (1153)
T ss_pred ---------------CCcCeeecCCCccc-cccccc-cccccccccccccchhh----------------------cccc
Confidence 12333333333332 222221 23444444444332110 0000
Q ss_pred CCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCC
Q 002360 507 VPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNN 586 (931)
Q Consensus 507 ~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 586 (931)
+.. +. + .....+++|+.|++++|...+.+|..+.++++|+.|++++|
T Consensus 766 ~~~--------------------------l~---~----~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C 812 (1153)
T PLN03210 766 VQP--------------------------LT---P----LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC 812 (1153)
T ss_pred ccc--------------------------cc---h----hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCC
Confidence 000 00 0 00011356778888887766667777888888888888887
Q ss_pred cceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCC
Q 002360 587 NFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFP 666 (931)
Q Consensus 587 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p 666 (931)
...+.+|..+ .+++|+.|++++|.....+|.. ..+|+.|+|++|.+. .+|.++. .+++|+.|++++|+--..+|
T Consensus 813 ~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~-~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 813 INLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIE-KFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred CCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHh-cCCCCCEEECCCCCCcCccC
Confidence 6555677665 5788888888887665555543 357888888888887 6887776 68888888888865555677
Q ss_pred cccCCCCCcCEEEccCCcc
Q 002360 667 IQLCRLASLQILDVAYNSL 685 (931)
Q Consensus 667 ~~l~~l~~L~~L~Ls~N~l 685 (931)
..+..+++|+.+++++|.-
T Consensus 887 ~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 887 LNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred cccccccCCCeeecCCCcc
Confidence 7777888888888887753
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=1.7e-24 Score=217.01 Aligned_cols=425 Identities=19% Similarity=0.198 Sum_probs=266.5
Q ss_pred CccEEEccCCCCCcccCCcccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCC-cccccccccccCCCCC
Q 002360 292 SIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRG-CQIFGHLTNQLGQFKR 370 (931)
Q Consensus 292 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~l~~ 370 (931)
.-.+++|..| .++...+.+|..+++|+.+++++|.|+...|..|..+ .++.+|.+.+ |+|+......|+++..
T Consensus 68 ~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL-----~~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 68 ETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGL-----ASLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred cceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhh-----HhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 4567788888 7777777788888888888888888877777777666 5555555544 7777766677777777
Q ss_pred CCEEeccCCcCCcCccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEcc
Q 002360 371 LNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELR 450 (931)
Q Consensus 371 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 450 (931)
|+.|.+.-|++.-.....|..+++|..|.+..|.+. .++...|..+..++.+.+..|.+.....-.|..-
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~--------- 211 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD--------- 211 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhh---------
Confidence 777777777777666677777777777777777775 5555567777777777777766544332222110
Q ss_pred CCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEE
Q 002360 451 SCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFD 530 (931)
Q Consensus 451 ~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ 530 (931)
.....|..+++........+.+.++....+..|.....++..=-.+.+..
T Consensus 212 ---~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~--------------------------- 261 (498)
T KOG4237|consen 212 ---DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP--------------------------- 261 (498)
T ss_pred ---HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc---------------------------
Confidence 00112223333334444444445554444444433211111100111111
Q ss_pred cccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCC
Q 002360 531 LSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNN 610 (931)
Q Consensus 531 ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 610 (931)
.+.-|.. .+..+++|++|+|++|+++++-+.+|..+..+++|.|..|++...-...|.++..|+.|+|.+|
T Consensus 262 ------d~~cP~~---cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N 332 (498)
T KOG4237|consen 262 ------DSICPAK---CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN 332 (498)
T ss_pred ------CCcChHH---HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC
Confidence 1111111 1345789999999999999999999999999999999999998777778999999999999999
Q ss_pred cCccccchhhccCCCCcEEecCCCcccccC-chhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccc-
Q 002360 611 RLSGVIPTSFKNFSILEALDVGENELVGSI-PTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGT- 688 (931)
Q Consensus 611 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~- 688 (931)
+|+...|..|..+.+|.+|.+-.|++...- -.|+++- +..+.-.|..|- +.-..++.++++++.+...
T Consensus 333 ~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~W--------lr~~~~~~~~~C--q~p~~~~~~~~~dv~~~~~~ 402 (498)
T KOG4237|consen 333 QITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEW--------LRKKSVVGNPRC--QSPGFVRQIPISDVAFGDFR 402 (498)
T ss_pred eeEEEecccccccceeeeeehccCcccCccchHHHHHH--------HhhCCCCCCCCC--CCCchhccccchhccccccc
Confidence 999999999999999999999998875321 1233221 112222222221 1223455556665554321
Q ss_pred --cCccccccccccccCCCCCCccccccccCCCccccc-eeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCC
Q 002360 689 --IPRCINNFSAMATADSSDQSSDILYAFSGDNKIVED-TSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQ 765 (931)
Q Consensus 689 --~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~ 765 (931)
.|+..+-.. ...++... ...+. .....++...-..++......+++.+|.++ .+|.+ .+.
T Consensus 403 c~~~ee~~~~~------s~~cP~~c--------~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp~~--~~~ 465 (498)
T KOG4237|consen 403 CGGPEELGCLT------SSPCPPPC--------TCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVPDE--LLR 465 (498)
T ss_pred cCCccccCCCC------CCCCCCCc--------chhhhhHhhcccchhhcCCCCCchhHHHhcccchhc-ccCHH--HHh
Confidence 222111100 00000000 00000 000111111111122334477999999998 78877 678
Q ss_pred CCCEEEccCCcCcccCCcCccCcCCCCEEeccCC
Q 002360 766 GLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSAN 799 (931)
Q Consensus 766 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N 799 (931)
+| .+|+|+|+++..-...|.++++|.+|-+|+|
T Consensus 466 ~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 466 SL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 88 9999999999888889999999999999987
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=4.9e-21 Score=220.18 Aligned_cols=202 Identities=28% Similarity=0.313 Sum_probs=132.6
Q ss_pred CCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEec
Q 002360 552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDV 631 (931)
Q Consensus 552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 631 (931)
++|+.|++++|.++. +|.. .++|+.|++++|+++ .+|.. +++|+.|++++|++++. |.. ..+|+.|++
T Consensus 262 ~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~L 329 (788)
T PRK15387 262 PGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASL-PAL---PSELCKLWA 329 (788)
T ss_pred cccceeeccCCchhh-hhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCccccC-CCC---ccccccccc
Confidence 456677777776664 3322 245667777777776 34432 35677777777777643 322 234667777
Q ss_pred CCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccc
Q 002360 632 GENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDI 711 (931)
Q Consensus 632 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 711 (931)
++|+++ .+|.. ..+|+.|+|++|++++ +|.. .++|+.|++++|++++ +|...
T Consensus 330 s~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l~------------------ 381 (788)
T PRK15387 330 YNNQLT-SLPTL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPALP------------------ 381 (788)
T ss_pred ccCccc-ccccc----ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Ccccc------------------
Confidence 777776 46631 3467777777777774 4432 3466777777777763 44321
Q ss_pred cccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCC
Q 002360 712 LYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI 791 (931)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L 791 (931)
..|+.|++++|+|++ +|.. .++|+.|++++|+++ .+|.. ..+|
T Consensus 382 -----------------------------~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L 424 (788)
T PRK15387 382 -----------------------------SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGL 424 (788)
T ss_pred -----------------------------cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhh
Confidence 124678888888873 5543 356888888888887 46753 3467
Q ss_pred CEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCC
Q 002360 792 ESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS 831 (931)
Q Consensus 792 ~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 831 (931)
+.|++++|+++ .+|..+.++++|+.|+|++|+|+|.+|.
T Consensus 425 ~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 425 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 77888888887 6788888888888888888888887664
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=1.3e-20 Score=216.69 Aligned_cols=186 Identities=28% Similarity=0.390 Sum_probs=119.6
Q ss_pred CccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecC
Q 002360 553 NIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVG 632 (931)
Q Consensus 553 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 632 (931)
+|+.|++++|+++. +|. ..++|+.|++++|++++ +|.. ..+|+.|++++|.+++ +|.. ..+|+.|+|+
T Consensus 283 ~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS 350 (788)
T PRK15387 283 GLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVS 350 (788)
T ss_pred hcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecC
Confidence 45556666666554 232 12456666666666663 3332 2346666666776663 3321 2457777777
Q ss_pred CCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcccc
Q 002360 633 ENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDIL 712 (931)
Q Consensus 633 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~ 712 (931)
+|+++ .+|.. .++|+.|++++|+++. +|.. .++|+.|++++|++++ +|...
T Consensus 351 ~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l~------------------- 401 (788)
T PRK15387 351 DNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVLP------------------- 401 (788)
T ss_pred CCccC-CCCCC----Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCcc-------------------
Confidence 77776 45542 3567777777777773 4533 2467788888888773 44321
Q ss_pred ccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCC
Q 002360 713 YAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE 792 (931)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 792 (931)
+.|+.|++++|++++ +|.. ...|+.|++++|+|+ .+|..+.++++|+
T Consensus 402 ----------------------------s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~ 448 (788)
T PRK15387 402 ----------------------------SELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSET 448 (788)
T ss_pred ----------------------------cCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCC
Confidence 123678888888874 6653 346778888888888 7888888888888
Q ss_pred EEeccCCcCcccCcccccCC
Q 002360 793 SLDFSANQLSGQIPQSMSNL 812 (931)
Q Consensus 793 ~LdLs~N~l~~~~p~~l~~l 812 (931)
.|+|++|++++.+|..+..+
T Consensus 449 ~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 449 TVNLEGNPLSERTLQALREI 468 (788)
T ss_pred eEECCCCCCCchHHHHHHHH
Confidence 99999998888888776443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=9.5e-19 Score=203.15 Aligned_cols=205 Identities=24% Similarity=0.428 Sum_probs=122.3
Q ss_pred CCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEec
Q 002360 552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDV 631 (931)
Q Consensus 552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 631 (931)
++|+.|++++|+++. +|..+. ++|+.|++++|++. .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++
T Consensus 220 ~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~L 290 (754)
T PRK15370 220 GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSV 290 (754)
T ss_pred cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEEC
Confidence 356666666666664 343332 35666677766666 4555443 456677777666663 444432 46677777
Q ss_pred CCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccc
Q 002360 632 GENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDI 711 (931)
Q Consensus 632 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 711 (931)
++|+++ .+|..+. ++|+.|++++|.++. +|..+ .++|+.|++++|.+++ +|..+
T Consensus 291 s~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l------------------ 344 (754)
T PRK15370 291 YDNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL------------------ 344 (754)
T ss_pred CCCccc-cCcccch---hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh------------------
Confidence 777666 4554432 356667777777663 44333 2566777777776663 44322
Q ss_pred cccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCC
Q 002360 712 LYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI 791 (931)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L 791 (931)
.+.|+.|++++|+++ .+|..+. +.|++|+|++|+++ .+|..+. .+|
T Consensus 345 ----------------------------~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL 390 (754)
T PRK15370 345 ----------------------------PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AAL 390 (754)
T ss_pred ----------------------------cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHH
Confidence 123467777777776 4555443 56777777777777 5565543 357
Q ss_pred CEEeccCCcCcccCcccc----cCCCCCCeeeCCCcccc
Q 002360 792 ESLDFSANQLSGQIPQSM----SNLSFLNYLNLSNNNLN 826 (931)
Q Consensus 792 ~~LdLs~N~l~~~~p~~l----~~l~~L~~L~ls~N~l~ 826 (931)
+.||+++|+++ .+|..+ ..++.+..+++.+|+++
T Consensus 391 ~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 391 QIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 77777777776 444433 33466777777777775
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=8.5e-19 Score=203.56 Aligned_cols=245 Identities=24% Similarity=0.393 Sum_probs=146.9
Q ss_pred ccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCC
Q 002360 444 LTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSL 523 (931)
Q Consensus 444 L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~ 523 (931)
...|+++++.++ .+|..+ .+.|+.|++++|+++. +|..+. .+|+.|++++|.++. +|
T Consensus 180 ~~~L~L~~~~Lt-sLP~~I--p~~L~~L~Ls~N~Lts-LP~~l~---~nL~~L~Ls~N~Lts-LP--------------- 236 (754)
T PRK15370 180 KTELRLKILGLT-TIPACI--PEQITTLILDNNELKS-LPENLQ---GNIKTLYANSNQLTS-IP--------------- 236 (754)
T ss_pred ceEEEeCCCCcC-cCCccc--ccCCcEEEecCCCCCc-CChhhc---cCCCEEECCCCcccc-CC---------------
Confidence 455666666655 334333 2467777777777763 344332 356666666666542 22
Q ss_pred ccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCC
Q 002360 524 LLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLR 603 (931)
Q Consensus 524 ~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 603 (931)
..+ ..+|+.|++++|++.. +|..+. ++|+.|++++|+++ .+|..+. ++|+
T Consensus 237 ------------------~~l------~~~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~ 286 (754)
T PRK15370 237 ------------------ATL------PDTIQEMELSINRITE-LPERLP--SALQSLDLFHNKIS-CLPENLP--EELR 286 (754)
T ss_pred ------------------hhh------hccccEEECcCCccCc-CChhHh--CCCCEEECcCCccC-ccccccC--CCCc
Confidence 111 1356666777766664 444433 35777777777766 4555443 4677
Q ss_pred EEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCC
Q 002360 604 SLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYN 683 (931)
Q Consensus 604 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 683 (931)
.|++++|++++ +|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|
T Consensus 287 ~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N 356 (754)
T PRK15370 287 YLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKN 356 (754)
T ss_pred EEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCccc---cccceeccccCCcccc-CChhhc--CcccEEECCCC
Confidence 77777777764 343322 35777777777776 466543 3567777777777764 555443 57777777777
Q ss_pred ccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccC
Q 002360 684 SLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTN 763 (931)
Q Consensus 684 ~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~ 763 (931)
+++ .+|..+ .+.|+.|+|++|+++ .+|..+.
T Consensus 357 ~L~-~LP~~l----------------------------------------------p~~L~~LdLs~N~Lt-~LP~~l~- 387 (754)
T PRK15370 357 QIT-VLPETL----------------------------------------------PPTITTLDVSRNALT-NLPENLP- 387 (754)
T ss_pred CCC-cCChhh----------------------------------------------cCCcCEEECCCCcCC-CCCHhHH-
Confidence 776 344322 112467777777777 4555543
Q ss_pred CCCCCEEEccCCcCcccCCcCcc----CcCCCCEEeccCCcCc
Q 002360 764 LQGLQSLNLSHNLFTGRIPDNIG----VMRSIESLDFSANQLS 802 (931)
Q Consensus 764 l~~L~~L~Ls~N~l~~~ip~~l~----~l~~L~~LdLs~N~l~ 802 (931)
..|+.|++++|+++ .+|..+. .++.+..|++.+|+++
T Consensus 388 -~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 -AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 35777788888877 5555443 3467778888888876
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=8e-19 Score=190.82 Aligned_cols=283 Identities=19% Similarity=0.225 Sum_probs=148.4
Q ss_pred EEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCC
Q 002360 470 DLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGEN 549 (931)
Q Consensus 470 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~ 549 (931)
.|+|..+.+++..-..++..+..++.|+++++.++. .....++..+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~---------------------------------~~~~~i~~~l~ 48 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGE---------------------------------EAAKALASALR 48 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcH---------------------------------HHHHHHHHHHh
Confidence 456666666644444455555566666666665532 11112222223
Q ss_pred CCCCccEEECcCCcccc------ccCCcccCCCCCCEEecCCCcceecCCCcccCCCC---CCEEEccCCcCcc----cc
Q 002360 550 FSKNIEFLKLSTNHFSE------GIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTS---LRSLNLRNNRLSG----VI 616 (931)
Q Consensus 550 ~~~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~---L~~L~L~~n~l~~----~~ 616 (931)
..+.++.++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..+.. |++|++++|++.+ .+
T Consensus 49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l 128 (319)
T cd00116 49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL 128 (319)
T ss_pred hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH
Confidence 34556666666665542 22334555666777777776665444444433333 7777777776652 22
Q ss_pred chhhccC-CCCcEEecCCCcccccCchhHH---hhcCcCcEEEccCcccccc----CCcccCCCCCcCEEEccCCccccc
Q 002360 617 PTSFKNF-SILEALDVGENELVGSIPTWIG---ERFSRLMILILRSNKFHGD----FPIQLCRLASLQILDVAYNSLLGT 688 (931)
Q Consensus 617 p~~~~~l-~~L~~L~L~~N~l~~~~p~~~~---~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ 688 (931)
...+..+ ++|+.|++++|.+++..+..+. ..+++|++|++++|.+++. ++..+..+++|+.|++++|.+.+.
T Consensus 129 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 208 (319)
T cd00116 129 AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE 208 (319)
T ss_pred HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence 2334445 6677777777766632222111 1345677777777666632 223344456677777777766532
Q ss_pred cCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCcccc-----C
Q 002360 689 IPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVT-----N 763 (931)
Q Consensus 689 ~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~-----~ 763 (931)
....+.. ....++.|+.|++++|.+++.....+. .
T Consensus 209 ~~~~l~~----------------------------------------~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~ 248 (319)
T cd00116 209 GASALAE----------------------------------------TLASLKSLEVLNLGDNNLTDAGAAALASALLSP 248 (319)
T ss_pred HHHHHHH----------------------------------------HhcccCCCCEEecCCCcCchHHHHHHHHHHhcc
Confidence 2211110 001123346666766666642222221 1
Q ss_pred CCCCCEEEccCCcCc----ccCCcCccCcCCCCEEeccCCcCccc----CcccccCC-CCCCeeeCCCccc
Q 002360 764 LQGLQSLNLSHNLFT----GRIPDNIGVMRSIESLDFSANQLSGQ----IPQSMSNL-SFLNYLNLSNNNL 825 (931)
Q Consensus 764 l~~L~~L~Ls~N~l~----~~ip~~l~~l~~L~~LdLs~N~l~~~----~p~~l~~l-~~L~~L~ls~N~l 825 (931)
.+.|++|++++|.++ ..+...+..+++|+.+|+++|.++.. ....+... +.|+++++.+|++
T Consensus 249 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 356777777777765 12333444556777777777777644 33334444 5667777766653
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=2.8e-18 Score=186.58 Aligned_cols=285 Identities=21% Similarity=0.236 Sum_probs=183.8
Q ss_pred EEccCCCCC-CCcChhhhccCCCcEEeCCCCCCCCCcchhH---HhccccceEEeccCcccccCCCCCCCCCCCcccCCC
Q 002360 447 LELRSCHLG-PRFPLWLQLQKKLNDLDISSTRISDKIPRAF---WNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPS 522 (931)
Q Consensus 447 L~L~~~~l~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~---~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~ 522 (931)
|+|..+.++ ......+..+..|+.|+++++.+++.....+ ....+.+++++++++.+.+ .+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~-------------- 67 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IP-------------- 67 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cc--------------
Confidence 455555554 3445566677778888888888865322222 2234456667666665532 00
Q ss_pred CccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCC---CCEEecCCCccee----cCCCc
Q 002360 523 LLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPR---LRTLNLGNNNFTG----SLPMS 595 (931)
Q Consensus 523 ~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~Ls~n~l~~----~~p~~ 595 (931)
.....++..+..+++|+.|++++|.+.+..+..+..+.. |++|++++|++++ .+...
T Consensus 68 ----------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~ 131 (319)
T cd00116 68 ----------------RGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131 (319)
T ss_pred ----------------hHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence 001111222333567888888888877544444444444 8888888888763 22334
Q ss_pred ccCC-CCCCEEEccCCcCccc----cchhhccCCCCcEEecCCCcccccCchhHHh---hcCcCcEEEccCcccccc---
Q 002360 596 IGTL-TSLRSLNLRNNRLSGV----IPTSFKNFSILEALDVGENELVGSIPTWIGE---RFSRLMILILRSNKFHGD--- 664 (931)
Q Consensus 596 ~~~l-~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~---~l~~L~~L~L~~n~l~~~--- 664 (931)
+..+ ++|++|++++|.+++. ++..+..+++|++|++++|.+++.....+.. ..++|+.|++++|.+++.
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence 5556 7889999999988843 3445667788999999999887532222222 346899999999988643
Q ss_pred -CCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccce
Q 002360 665 -FPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLV 743 (931)
Q Consensus 665 -~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 743 (931)
++..+..+++|+.|++++|++++.....+... + ....+.|
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~--~-------------------------------------~~~~~~L 252 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASA--L-------------------------------------LSPNISL 252 (319)
T ss_pred HHHHHhcccCCCCEEecCCCcCchHHHHHHHHH--H-------------------------------------hccCCCc
Confidence 34456778999999999999875322222110 0 0012456
Q ss_pred eEEEcccCccc----ccCCccccCCCCCCEEEccCCcCccc----CCcCccCc-CCCCEEeccCCcC
Q 002360 744 RSIDISMNNFS----GEIPVEVTNLQGLQSLNLSHNLFTGR----IPDNIGVM-RSIESLDFSANQL 801 (931)
Q Consensus 744 ~~LdLs~N~l~----~~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l-~~L~~LdLs~N~l 801 (931)
+.|++++|.++ ..+...+..+++|+.+++++|.++.. +...+... +.|++||+.+|++
T Consensus 253 ~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred eEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 89999999997 23455667778999999999999854 34444444 7899999999864
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=7.8e-19 Score=156.04 Aligned_cols=181 Identities=26% Similarity=0.503 Sum_probs=134.6
Q ss_pred CCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEE
Q 002360 599 LTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQIL 678 (931)
Q Consensus 599 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 678 (931)
+...+.|.+++|+++ .+|..++.+.+|+.|++++|++. .+|..+. .+++|+.|+++-|++. ..|..|+.+|.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 445556666666666 44455666777777777777776 6777775 6777778887777776 678888888888888
Q ss_pred EccCCcccc-ccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccC
Q 002360 679 DVAYNSLLG-TIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEI 757 (931)
Q Consensus 679 ~Ls~N~l~~-~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~i 757 (931)
||++|++.. .+|..|..++.| +.|+|++|.|. .+
T Consensus 108 dltynnl~e~~lpgnff~m~tl--------------------------------------------ralyl~dndfe-~l 142 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTL--------------------------------------------RALYLGDNDFE-IL 142 (264)
T ss_pred hccccccccccCCcchhHHHHH--------------------------------------------HHHHhcCCCcc-cC
Confidence 888888763 455555444443 66788888887 78
Q ss_pred CccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCC---CCCeeeCCCccccccCC
Q 002360 758 PVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLS---FLNYLNLSNNNLNGEIP 830 (931)
Q Consensus 758 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~---~L~~L~ls~N~l~g~ip 830 (931)
|..++++++|+.|.+..|.+. ..|..++.++.|+.|.+.+|+++ .+|..++.+. +=+.+.+.+|+...+|-
T Consensus 143 p~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 143 PPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIA 216 (264)
T ss_pred ChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence 888999999999999999988 88999999999999999999998 6777777654 23456677888765543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=1.8e-18 Score=153.82 Aligned_cols=185 Identities=27% Similarity=0.464 Sum_probs=104.8
Q ss_pred CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360 551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD 630 (931)
Q Consensus 551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 630 (931)
+..++.|.+++|+++. +|..+..+.+|+.|++++|++. .+|.+++.++.|+.|++.-|++. ..|..|+.++.|++||
T Consensus 32 ~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 3445555555555554 3334455555555555555555 44555555555555555555554 4455555555555555
Q ss_pred cCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcc
Q 002360 631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSD 710 (931)
Q Consensus 631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 710 (931)
+.+|++... .+|..|..++.|+.|+|++|.+. .+|+.++++++|
T Consensus 109 ltynnl~e~------------------------~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l----------- 152 (264)
T KOG0617|consen 109 LTYNNLNEN------------------------SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL----------- 152 (264)
T ss_pred ccccccccc------------------------cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce-----------
Confidence 555544321 24455555555555555555554 445555554444
Q ss_pred ccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcC-
Q 002360 711 ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR- 789 (931)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~- 789 (931)
+.|.+..|.+- ..|.+++.++.|++|.+.+|+++ .+|..++++.
T Consensus 153 ---------------------------------qil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l 197 (264)
T KOG0617|consen 153 ---------------------------------QILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDL 197 (264)
T ss_pred ---------------------------------eEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhh
Confidence 45555555555 67788888888888888888888 6776676653
Q ss_pred --CCCEEeccCCcCcccCcccc
Q 002360 790 --SIESLDFSANQLSGQIPQSM 809 (931)
Q Consensus 790 --~L~~LdLs~N~l~~~~p~~l 809 (931)
+=+.+.+.+|.....|.+.|
T Consensus 198 ~~~k~v~r~E~NPwv~pIaeQf 219 (264)
T KOG0617|consen 198 VGNKQVMRMEENPWVNPIAEQF 219 (264)
T ss_pred hhhHHHHhhhhCCCCChHHHHH
Confidence 22445566777665555443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.55 E-value=1.1e-14 Score=169.52 Aligned_cols=115 Identities=37% Similarity=0.674 Sum_probs=102.9
Q ss_pred eeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCC
Q 002360 743 VRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSN 822 (931)
Q Consensus 743 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~ 822 (931)
++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCC--ccCcccccccCCC-CCCCCCC-CCCC
Q 002360 823 NNLNGEIPSST--QLQSFDASSFAGN-DLCGAPL-SSCT 857 (931)
Q Consensus 823 N~l~g~ip~~~--~~~~~~~~~~~~n-~l~~~~~-~~c~ 857 (931)
|+++|.+|... .+......++.+| .+||.|. ..|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999752 1233445678999 8998753 3564
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.36 E-value=2.9e-12 Score=149.27 Aligned_cols=134 Identities=34% Similarity=0.531 Sum_probs=113.6
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCc----CccceEecC--CC--CcEEEEEcCCCCCCCchhhhccccc
Q 002360 10 TSCIESEREALLKLKHDLRDPSHRLASWIGDNGDCC----KWGGVLCGN--FT--GHVLELNLQNPFSPDDNEAYQRSML 81 (931)
Q Consensus 10 ~~~~~~~~~~ll~~k~~~~d~~~~l~~w~~~~~~~c----~w~g~~c~~--~~--~~v~~L~l~~~~~~~~~~~~~~~~~ 81 (931)
..+.++|.+||+++|.++.++.. .+|. +..|| .|.|+.|.. .. .+|+.|+|+++ .+
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~--g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n------------~L 430 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWN--GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ------------GL 430 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCC--CCCCCCcccccccceeeccCCCCceEEEEEECCCC------------Cc
Confidence 35677899999999999876532 4896 34453 799999952 22 36999999996 78
Q ss_pred ceeecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCccc-ccccC
Q 002360 82 VGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFE-LHAET 160 (931)
Q Consensus 82 ~~~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~-~~~~~ 160 (931)
.|.+|..+.++++|+.|+|++|.+.+. +|..++.+++|++|+|++|.+++.+|..++++++|++|+|++|.+. .+|..
T Consensus 431 ~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 431 RGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509 (623)
T ss_pred cccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH
Confidence 899999999999999999999999986 8999999999999999999999999999999999999999998865 34443
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.30 E-value=1.1e-13 Score=146.43 Aligned_cols=113 Identities=29% Similarity=0.468 Sum_probs=56.8
Q ss_pred CEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccC
Q 002360 579 RTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRS 658 (931)
Q Consensus 579 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~ 658 (931)
...|++.|++. ++|..+..+..|+.+.+..|.+. .+|..+.++..|.+|||+.|+++ .+|..++ .+ -|+.|-+++
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~l-pLkvli~sN 152 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DL-PLKVLIVSN 152 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cC-cceeEEEec
Confidence 34555555555 44554444455555555555554 44455555555555555555555 4555443 22 255555555
Q ss_pred ccccccCCcccCCCCCcCEEEccCCccccccCcccccccc
Q 002360 659 NKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSA 698 (931)
Q Consensus 659 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 698 (931)
|+++ .+|..++.++.|..||.+.|.+. .+|..++.+.+
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~s 190 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTS 190 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHH
Confidence 5554 44444555555555555555554 34444444333
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.29 E-value=1.2e-13 Score=146.07 Aligned_cols=176 Identities=31% Similarity=0.490 Sum_probs=151.9
Q ss_pred CCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEE
Q 002360 599 LTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQIL 678 (931)
Q Consensus 599 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 678 (931)
++--...+++.|++. .+|..+..+..|+.+.+..|.+. .+|..+. ++..|++|+|+.|+++ ..|..++.|+ |+.|
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~-~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAIC-NLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhh-hhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 445567899999998 78888899999999999999998 8999998 7999999999999999 7888888876 8999
Q ss_pred EccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCC
Q 002360 679 DVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIP 758 (931)
Q Consensus 679 ~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip 758 (931)
-+++|+++ .+|+.++.+..| ..||.|.|++. .+|
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl--------------------------------------------~~ld~s~nei~-slp 182 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTL--------------------------------------------AHLDVSKNEIQ-SLP 182 (722)
T ss_pred EEecCccc-cCCcccccchhH--------------------------------------------HHhhhhhhhhh-hch
Confidence 99999997 778777644443 67888999987 788
Q ss_pred ccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCcccccc
Q 002360 759 VEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE 828 (931)
Q Consensus 759 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 828 (931)
..++++.+|+.|++..|++. ..|+.+..| .|..||+|+|+++ .||-.|.+|+.|++|-|.+|+|+.+
T Consensus 183 sql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 183 SQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred HHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence 88999999999999999998 677777755 4889999999998 8899999999999999999999854
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=9.4e-12 Score=139.13 Aligned_cols=199 Identities=31% Similarity=0.560 Sum_probs=113.0
Q ss_pred EEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCC-CCCEEEccCCcCccccchhhccCCCCcEEecCCC
Q 002360 556 FLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLT-SLRSLNLRNNRLSGVIPTSFKNFSILEALDVGEN 634 (931)
Q Consensus 556 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 634 (931)
.+++..|.+...+. .+..++.++.|++.+|.++ .+|......+ +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 56666666633222 2334466777777777777 4455555553 7777777777776 34455667777777777777
Q ss_pred cccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcccccc
Q 002360 635 ELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYA 714 (931)
Q Consensus 635 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~ 714 (931)
++. .+|.... ..+.|+.|++++|++. .+|........|+.+++++|++. ..+..+.++..+
T Consensus 174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l--------------- 234 (394)
T COG4886 174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL--------------- 234 (394)
T ss_pred hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc---------------
Confidence 776 5665543 4666777777777766 44444444445666666666432 222223332222
Q ss_pred ccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEE
Q 002360 715 FSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESL 794 (931)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L 794 (931)
..+.+++|++. .++..++.++.+++|++++|.++ .++. ++.+.+++.|
T Consensus 235 -----------------------------~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L 282 (394)
T COG4886 235 -----------------------------SGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLREL 282 (394)
T ss_pred -----------------------------cccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEE
Confidence 34445555554 22445555555666666666665 3333 5555666666
Q ss_pred eccCCcCcccCccc
Q 002360 795 DFSANQLSGQIPQS 808 (931)
Q Consensus 795 dLs~N~l~~~~p~~ 808 (931)
|+++|.++...|..
T Consensus 283 ~~s~n~~~~~~~~~ 296 (394)
T COG4886 283 DLSGNSLSNALPLI 296 (394)
T ss_pred eccCccccccchhh
Confidence 66666665444433
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.21 E-value=1.6e-11 Score=137.35 Aligned_cols=200 Identities=32% Similarity=0.496 Sum_probs=141.1
Q ss_pred CEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCC-CCcEEecCCCcccccCchhHHhhcCcCcEEEcc
Q 002360 579 RTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFS-ILEALDVGENELVGSIPTWIGERFSRLMILILR 657 (931)
Q Consensus 579 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~ 657 (931)
..++++.|.+... ...+..++.++.|++.+|.++. ++....... +|+.|++++|++. .+|..+. .+++|+.|+++
T Consensus 96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~ 171 (394)
T COG4886 96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLS 171 (394)
T ss_pred ceeeccccccccC-chhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhh-ccccccccccC
Confidence 3577777776422 2334455778888888888874 444445553 7888888888887 6765555 68888888888
Q ss_pred CccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhh
Q 002360 658 SNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYN 737 (931)
Q Consensus 658 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (931)
+|++. .+|...+.++.|+.|++++|++. .+|.......
T Consensus 172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~---------------------------------------- 209 (394)
T COG4886 172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLS---------------------------------------- 209 (394)
T ss_pred Cchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhh----------------------------------------
Confidence 88887 45554446788888888888887 4454332222
Q ss_pred hhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCe
Q 002360 738 SILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNY 817 (931)
Q Consensus 738 ~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~ 817 (931)
.|+.+++++|... .++..+..+..+..|.+++|++. .++..++.+++++.|++++|+++. ++. +..+..|+.
T Consensus 210 ----~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~ 281 (394)
T COG4886 210 ----ALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRE 281 (394)
T ss_pred ----hhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCE
Confidence 2467778888544 56667778888888888888887 557777888888888888888874 443 778888888
Q ss_pred eeCCCccccccCCCC
Q 002360 818 LNLSNNNLNGEIPSS 832 (931)
Q Consensus 818 L~ls~N~l~g~ip~~ 832 (931)
|++++|.++...|..
T Consensus 282 L~~s~n~~~~~~~~~ 296 (394)
T COG4886 282 LDLSGNSLSNALPLI 296 (394)
T ss_pred EeccCccccccchhh
Confidence 888888887776643
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.13 E-value=1e-11 Score=147.25 Aligned_cols=160 Identities=26% Similarity=0.286 Sum_probs=101.9
Q ss_pred hcCCCCCCCCCCCCCC-----CCCCcCccceEec-----CCCCcEEEEEcCCCCCCCchhhhcccccceeecccccCccC
Q 002360 25 HDLRDPSHRLASWIGD-----NGDCCKWGGVLCG-----NFTGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKH 94 (931)
Q Consensus 25 ~~~~d~~~~l~~w~~~-----~~~~c~w~g~~c~-----~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 94 (931)
-.|||.+.++|-|+++ ..++|.-.++.-. .....||++++.++ ....++.+. ..+.
T Consensus 481 ~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~-------------~~~~~~~~~-~~~~ 546 (889)
T KOG4658|consen 481 VKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNN-------------KIEHIAGSS-ENPK 546 (889)
T ss_pred EEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEecc-------------chhhccCCC-CCCc
Confidence 4689999999999943 2444443331111 11246677776653 122222222 2336
Q ss_pred CcEeeCCCCC--CCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCCCe
Q 002360 95 LVHLDLSGND--FQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEH 172 (931)
Q Consensus 95 L~~L~Ls~n~--~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~ 172 (931)
|++|-+.+|. +... .+++|..++.|++|||++|.--+.+|..|+.|.+||+|+++++.++.+|..+ ++++.|.+
T Consensus 547 L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l---~~Lk~L~~ 622 (889)
T KOG4658|consen 547 LRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL---GNLKKLIY 622 (889)
T ss_pred cceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH---HHHHhhhe
Confidence 8888888875 4433 3566888999999999988766689999999999999999999888877764 56666677
Q ss_pred EEccCcccCCCCchHHHhccCCCCCEEEcCCC
Q 002360 173 LYISFVNLSKASDSLLVINSLHSLKELKLSFC 204 (931)
Q Consensus 173 L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n 204 (931)
|++..+...... +.....+++|++|.+...
T Consensus 623 Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 623 LNLEVTGRLESI--PGILLELQSLRVLRLPRS 652 (889)
T ss_pred eccccccccccc--cchhhhcccccEEEeecc
Confidence 776655433222 112334556666555443
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.10 E-value=1e-11 Score=124.58 Aligned_cols=142 Identities=23% Similarity=0.271 Sum_probs=69.0
Q ss_pred ccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCcccc----ccCCcccCCCCCCEEecCCCcceec----CCCc
Q 002360 524 LLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSE----GIPDCWMNWPRLRTLNLGNNNFTGS----LPMS 595 (931)
Q Consensus 524 ~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~ 595 (931)
+.|+++.+.+|++....-..+...+...+.|+.+.++.|.|.. .+...|..+++|+.|||.+|.++.. +...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 4566666666666554444444444445556666666665532 1223344555555555555555421 1222
Q ss_pred ccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCcccccc----CCcccCC
Q 002360 596 IGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGD----FPIQLCR 671 (931)
Q Consensus 596 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~ 671 (931)
+..+++|++|++++|.+...-...| -..+-...++|++|.+.+|.++.. +...+..
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~--------------------~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e 296 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAF--------------------VDALKESAPSLEVLELAGNEITRDAALALAACMAE 296 (382)
T ss_pred hcccchheeecccccccccccHHHH--------------------HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc
Confidence 3334444555555544443222111 111112344555555555555422 2223344
Q ss_pred CCCcCEEEccCCcc
Q 002360 672 LASLQILDVAYNSL 685 (931)
Q Consensus 672 l~~L~~L~Ls~N~l 685 (931)
.+.|..|+|++|++
T Consensus 297 k~dL~kLnLngN~l 310 (382)
T KOG1909|consen 297 KPDLEKLNLNGNRL 310 (382)
T ss_pred chhhHHhcCCcccc
Confidence 67777777777777
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=4.7e-11 Score=123.04 Aligned_cols=212 Identities=22% Similarity=0.226 Sum_probs=90.5
Q ss_pred CccCCcEeeCCCCCCCCCCchhhhhcCCCCceeeccccccccc--CCcccCCCCCCCEEEccCCcccccccCccccCCCC
Q 002360 91 ELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGM--IPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLS 168 (931)
Q Consensus 91 ~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~--~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~ 168 (931)
+++.|+...|.++.+...........|++++.|||+.|-+... +-.....|++|+.|+|+.|.+........ -..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-TLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-hhhhh
Confidence 4555555555555544221112445555555555555544422 11233455555555555555433222111 01334
Q ss_pred CCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEE
Q 002360 169 LLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLD 248 (931)
Q Consensus 169 ~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 248 (931)
+|+.|.++.|.++ ..+....+.. +|+|+.|++.+|...........-+..|++|+
T Consensus 198 ~lK~L~l~~CGls-~k~V~~~~~~------------------------fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~Ld 252 (505)
T KOG3207|consen 198 HLKQLVLNSCGLS-WKDVQWILLT------------------------FPSLEVLYLEANEIILIKATSTKILQTLQELD 252 (505)
T ss_pred hhheEEeccCCCC-HHHHHHHHHh------------------------CCcHHHhhhhcccccceecchhhhhhHHhhcc
Confidence 4444444444444 2222223334 45555555555532212222223344455555
Q ss_pred cCCCcccccc-cccccCCCCCCEEeccCCccccccCcc-----ccCCCCCccEEEccCCCCCcc-cCCcccCCCCCCcEE
Q 002360 249 LYSNQFNSAV-LGWLSKLNDLEVLSLEDNRLQGDISSL-----GLDNLTSIQKLLLSWNDELGG-KIPTSFGKLCKLTSF 321 (931)
Q Consensus 249 L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~-----~l~~l~~L~~L~L~~n~~~~~-~~~~~~~~l~~L~~L 321 (931)
|++|++-... -...+.++.|+.|+++.+.+..-.-.. ....+++|++|++..| .+.. .....+..+++|+.+
T Consensus 253 Ls~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l 331 (505)
T KOG3207|consen 253 LSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHL 331 (505)
T ss_pred ccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhh
Confidence 5555443221 122344455555555555443211000 0234455555555555 3211 111223344555666
Q ss_pred EcCCCcCC
Q 002360 322 SMASTKLS 329 (931)
Q Consensus 322 ~l~~~~l~ 329 (931)
.+..+.+.
T Consensus 332 ~~~~n~ln 339 (505)
T KOG3207|consen 332 RITLNYLN 339 (505)
T ss_pred hccccccc
Confidence 65555554
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=7.2e-11 Score=115.30 Aligned_cols=130 Identities=24% Similarity=0.282 Sum_probs=88.3
Q ss_pred cCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEe
Q 002360 650 RLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVM 729 (931)
Q Consensus 650 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (931)
.|+++||++|.++ .+.++..-+|.++.|++|+|.+.. ++++..
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-----v~nLa~------------------------------- 327 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-----VQNLAE------------------------------- 327 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceee-----ehhhhh-------------------------------
Confidence 4677777777776 455555666777777777777752 111111
Q ss_pred ecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccC-ccc
Q 002360 730 KGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI-PQS 808 (931)
Q Consensus 730 ~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~-p~~ 808 (931)
+++|+.||||+|.++ .+...-..+-+.++|+|+.|.+. . -..++.+-+|+.||+++|+|.... -..
T Consensus 328 ----------L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~ 394 (490)
T KOG1259|consen 328 ----------LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-T-LSGLRKLYSLVNLDLSSNQIEELDEVNH 394 (490)
T ss_pred ----------cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-h-hhhhHhhhhheeccccccchhhHHHhcc
Confidence 333477777777776 33333345667788888888875 2 234777888899999999887432 346
Q ss_pred ccCCCCCCeeeCCCccccccC
Q 002360 809 MSNLSFLNYLNLSNNNLNGEI 829 (931)
Q Consensus 809 l~~l~~L~~L~ls~N~l~g~i 829 (931)
+++|+.|+.+-|.+|++.+.+
T Consensus 395 IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 395 IGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred cccccHHHHHhhcCCCccccc
Confidence 788899999999999998754
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.1e-11 Score=122.84 Aligned_cols=138 Identities=28% Similarity=0.289 Sum_probs=67.5
Q ss_pred CCCCCCccEEECcCCccccccC-CcccCCCCCCEEecCCCcceecCC--CcccCCCCCCEEEccCCcCccccchh-hccC
Q 002360 548 ENFSKNIEFLKLSTNHFSEGIP-DCWMNWPRLRTLNLGNNNFTGSLP--MSIGTLTSLRSLNLRNNRLSGVIPTS-FKNF 623 (931)
Q Consensus 548 ~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l 623 (931)
-.+..+|+.+.|.++.+..... .....|++++.|||++|-+..-.| .-...+++|+.|+++.|++....... -..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 3445667777777766653221 244556677777777776552211 22345666666666666665322111 1134
Q ss_pred CCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCcc
Q 002360 624 SILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSL 685 (931)
Q Consensus 624 ~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 685 (931)
++|+.|.|+.|.++..--.++...+|+|+.|+|..|...+.-.....-+..|+.|||++|++
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence 55555666666554222223333455555555555532212111222344444555555444
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=9.8e-11 Score=114.37 Aligned_cols=201 Identities=23% Similarity=0.282 Sum_probs=131.1
Q ss_pred CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccC-CcCccccchhhccCCCCcEE
Q 002360 551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRN-NRLSGVIPTSFKNFSILEAL 629 (931)
Q Consensus 551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L 629 (931)
.++|..+.++.+.-..+..-. ..-|.|+++.+.+..+. ..| .+-..+.+....-.. .-.+|.....+...+.|+++
T Consensus 213 f~~l~~~~~s~~~~~~i~~~~-~~kptl~t~~v~~s~~~-~~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Ltel 289 (490)
T KOG1259|consen 213 FRNLKTLKFSALSTENIVDIE-LLKPTLQTICVHNTTIQ-DVP-SLLPETILADPSGSEPSTSNGSALVSADTWQELTEL 289 (490)
T ss_pred hhhhheeeeeccchhheecee-ecCchhheeeeeccccc-ccc-cccchhhhcCccCCCCCccCCceEEecchHhhhhhc
Confidence 456777777666433221111 12256777776655444 111 121122222222211 11233333344455779999
Q ss_pred ecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCc
Q 002360 630 DVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSS 709 (931)
Q Consensus 630 ~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~ 709 (931)
||++|.++ .+.+++- -.|.++.|++++|.+... ..+..+++|+.||||+|.++.. ...
T Consensus 290 DLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gw----------------- 347 (490)
T KOG1259|consen 290 DLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGW----------------- 347 (490)
T ss_pred cccccchh-hhhhhhh-hccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhh-----------------
Confidence 99999998 6777764 689999999999999843 2377899999999999998721 111
Q ss_pred cccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccC-CcCccCc
Q 002360 710 DILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRI-PDNIGVM 788 (931)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l 788 (931)
...+.+.++|.|+.|.+.. -..++.+-+|..||+++|+|.... -..+|++
T Consensus 348 ---------------------------h~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~L 398 (490)
T KOG1259|consen 348 ---------------------------HLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNL 398 (490)
T ss_pred ---------------------------HhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccc
Confidence 1123445899999998852 245778889999999999997422 3568999
Q ss_pred CCCCEEeccCCcCcccC
Q 002360 789 RSIESLDFSANQLSGQI 805 (931)
Q Consensus 789 ~~L~~LdLs~N~l~~~~ 805 (931)
+.|+.+.|-+|++.+..
T Consensus 399 PCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 399 PCLETLRLTGNPLAGSV 415 (490)
T ss_pred cHHHHHhhcCCCccccc
Confidence 99999999999998553
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.98 E-value=6.7e-11 Score=118.73 Aligned_cols=184 Identities=29% Similarity=0.323 Sum_probs=100.3
Q ss_pred eeecccccCccCCcEeeCCCCCCCCC---CchhhhhcCCCCceeeccccc---ccccCCcc-------cCCCCCCCEEEc
Q 002360 83 GKINPSLLELKHLVHLDLSGNDFQGI---QIPKYLASLVNLRYLNLSQAR---FTGMIPHQ-------LGNLSNLQYLDL 149 (931)
Q Consensus 83 ~~l~~~l~~l~~L~~L~Ls~n~~~~~---~l~~~l~~l~~L~~L~Ls~n~---~~~~~p~~-------~~~L~~L~~L~L 149 (931)
+.+-+.+.....++.++||+|.+... .+...+.+-+.|+..++++-- ....+|++ +.++++|++|||
T Consensus 20 ~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldL 99 (382)
T KOG1909|consen 20 KDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDL 99 (382)
T ss_pred hhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeec
Confidence 33445566788999999999988643 134567777888888888642 12234443 345667888888
Q ss_pred cCCcccc--cccCccccCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccC
Q 002360 150 SGVYFEL--HAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSG 227 (931)
Q Consensus 150 s~n~~~~--~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 227 (931)
|.|-+.. ++.....+..+..|++|.|.+|.+......... ..|..|. . ......-+.|+++....
T Consensus 100 SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~----~al~~l~--~-------~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 100 SDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG----RALFELA--V-------NKKAASKPKLRVFICGR 166 (382)
T ss_pred cccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH----HHHHHHH--H-------HhccCCCcceEEEEeec
Confidence 8776531 111112244556666666666655543221100 0000000 0 01122335666666666
Q ss_pred CcCCCC----CcccccCCCCCCEEEcCCCccccc----ccccccCCCCCCEEeccCCccc
Q 002360 228 NQFQGQ----IPSRLGNLTSLKHLDLYSNQFNSA----VLGWLSKLNDLEVLSLEDNRLQ 279 (931)
Q Consensus 228 n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 279 (931)
|++... +...|...+.|+.+.+..|.+... ....+..+++|++|||.+|.++
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 665432 223355556677777776665322 2234556677777777777655
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=3.7e-10 Score=107.01 Aligned_cols=87 Identities=34% Similarity=0.409 Sum_probs=17.9
Q ss_pred hhcCCCCceeecccccccccCCcccC-CCCCCCEEEccCCcccccccCccccCCCCCCCeEEccCcccCCCCchHHHhcc
Q 002360 114 LASLVNLRYLNLSQARFTGMIPHQLG-NLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINS 192 (931)
Q Consensus 114 l~~l~~L~~L~Ls~n~~~~~~p~~~~-~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~ 192 (931)
+.+..+++.|+|++|.|+. + +.++ .+.+|+.|++++|.++.++. +..++.|++|++++|.++.+.... ...
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N~I~~i~~~l--~~~ 86 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNNRISSISEGL--DKN 86 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS---S-CHHH--HHH
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCCCCCCccccch--HHh
Confidence 4445567777777777763 2 2344 46677777777777665543 444555555555555555543211 113
Q ss_pred CCCCCEEEcCCCCCCC
Q 002360 193 LHSLKELKLSFCELHH 208 (931)
Q Consensus 193 l~~L~~L~Ls~n~l~~ 208 (931)
+++|++|++++|++..
T Consensus 87 lp~L~~L~L~~N~I~~ 102 (175)
T PF14580_consen 87 LPNLQELYLSNNKISD 102 (175)
T ss_dssp -TT--EEE-TTS---S
T ss_pred CCcCCEEECcCCcCCC
Confidence 4444444444444433
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=6.7e-10 Score=105.26 Aligned_cols=108 Identities=25% Similarity=0.279 Sum_probs=27.2
Q ss_pred CCCccEEECcCCccccccCCccc-CCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEE
Q 002360 551 SKNIEFLKLSTNHFSEGIPDCWM-NWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEAL 629 (931)
Q Consensus 551 ~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 629 (931)
+..+++|+|++|.|+.+ +.+. .+.+|+.|++++|.++.. + .+..++.|++|++++|+++...+.....+++|+.|
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 34566677777766652 2233 355666666666666632 2 45556666666666666664322212345666666
Q ss_pred ecCCCcccccCchhHHhhcCcCcEEEccCcccc
Q 002360 630 DVGENELVGSIPTWIGERFSRLMILILRSNKFH 662 (931)
Q Consensus 630 ~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~ 662 (931)
++++|++...-.-.....+++|+.|++.+|++.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 666666642111111124555555555555554
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.87 E-value=1.7e-09 Score=128.62 Aligned_cols=117 Identities=32% Similarity=0.398 Sum_probs=88.3
Q ss_pred eecc-cccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCcc
Q 002360 84 KINP-SLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETIS 162 (931)
Q Consensus 84 ~l~~-~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~ 162 (931)
.++. .|..+++|++|||++|.--+ .+|+.++.+-+||+|+|+++.+. .+|..+++|+.|.+|++..+....... .
T Consensus 561 ~is~~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~--~ 636 (889)
T KOG4658|consen 561 EISGEFFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIP--G 636 (889)
T ss_pred hcCHHHHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccccccc--c
Confidence 3443 36779999999999875433 59999999999999999999998 899999999999999999776433332 2
Q ss_pred ccCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCC
Q 002360 163 WLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFC 204 (931)
Q Consensus 163 ~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n 204 (931)
....|++|++|.+..............+..+.+|+.+.....
T Consensus 637 i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 637 ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred hhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 256799999999977664443444444556666666665443
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=2.4e-09 Score=83.21 Aligned_cols=60 Identities=47% Similarity=0.680 Sum_probs=37.0
Q ss_pred CCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccc
Q 002360 766 GLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL 825 (931)
Q Consensus 766 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l 825 (931)
+|++|++++|+++...+..|..+++|++||+++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455666666666644445566666666666666666655556666666666666666654
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=5.7e-09 Score=81.13 Aligned_cols=61 Identities=33% Similarity=0.467 Sum_probs=56.6
Q ss_pred cceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcC
Q 002360 741 NLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQL 801 (931)
Q Consensus 741 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l 801 (931)
+.|+.|++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3578999999999977778899999999999999999988889999999999999999986
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.69 E-value=4.2e-09 Score=117.70 Aligned_cols=225 Identities=24% Similarity=0.214 Sum_probs=139.7
Q ss_pred CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360 551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD 630 (931)
Q Consensus 551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 630 (931)
+++|+.|++.+|+|..+.. .+..+++|++|++++|.|+... .+..++.|+.|++++|.+... ..+..++.|+.++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLD 168 (414)
T ss_pred ccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhccc
Confidence 5677777777777776322 2566777888888888777443 345566677788888877643 3455577777778
Q ss_pred cCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcc
Q 002360 631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSD 710 (931)
Q Consensus 631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 710 (931)
+++|.+. .+.......+.+++.+.+.+|.+... ..+..+..+..+++..|.++..-+.. .+..
T Consensus 169 l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~--~~~~------------ 231 (414)
T KOG0531|consen 169 LSYNRIV-DIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLN--ELVM------------ 231 (414)
T ss_pred CCcchhh-hhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCcc--cchh------------
Confidence 8877776 34331012567777777777776632 22333444555566666665222110 0000
Q ss_pred ccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCC
Q 002360 711 ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS 790 (931)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 790 (931)
..|+.+++++|++. .++..+..+..+..|+++.|++...- .+.....
T Consensus 232 ------------------------------~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~ 278 (414)
T KOG0531|consen 232 ------------------------------LHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPK 278 (414)
T ss_pred ------------------------------HHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccch
Confidence 02467788888886 44456777788888888888876322 2455667
Q ss_pred CCEEeccCCcCccc---Cccc-ccCCCCCCeeeCCCccccccCC
Q 002360 791 IESLDFSANQLSGQ---IPQS-MSNLSFLNYLNLSNNNLNGEIP 830 (931)
Q Consensus 791 L~~LdLs~N~l~~~---~p~~-l~~l~~L~~L~ls~N~l~g~ip 830 (931)
+..+..+.|.+... .... ....+.++.+.+.+|+.....+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 279 LSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred HHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 77777777776632 1121 4556778888888888776554
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.68 E-value=2.4e-09 Score=119.73 Aligned_cols=217 Identities=24% Similarity=0.306 Sum_probs=154.7
Q ss_pred CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360 551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD 630 (931)
Q Consensus 551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 630 (931)
+..++.+++..|.+.. +-..+..+.+|+.|++.+|+|.+. ...+..+++|++|++++|.|+... .+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence 4567777788888876 333466778899999999999844 333677889999999999998654 356677799999
Q ss_pred cCCCcccccCchhHHhhcCcCcEEEccCccccccCC-cccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCc
Q 002360 631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFP-IQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSS 709 (931)
Q Consensus 631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~ 709 (931)
+++|.+. .++.. ..+..|+.+++++|.+...-+ . ...+.+++.+++.+|.+...-. +..
T Consensus 147 l~~N~i~-~~~~~--~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~-------------- 206 (414)
T KOG0531|consen 147 LSGNLIS-DISGL--ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDL-------------- 206 (414)
T ss_pred eccCcch-hccCC--ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHH--------------
Confidence 9999987 44432 147888889999998885544 2 4677888888888888862211 111
Q ss_pred cccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCC--CCCEEEccCCcCcccCCcCccC
Q 002360 710 DILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQ--GLQSLNLSHNLFTGRIPDNIGV 787 (931)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~--~L~~L~Ls~N~l~~~ip~~l~~ 787 (931)
...+..+++..|.++-.-+ +..+. +|+.+++++|++. .++..+..
T Consensus 207 ------------------------------~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~ 253 (414)
T KOG0531|consen 207 ------------------------------LKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLEN 253 (414)
T ss_pred ------------------------------HHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccc
Confidence 1112345788888863222 22333 3899999999998 66577888
Q ss_pred cCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCcccc
Q 002360 788 MRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN 826 (931)
Q Consensus 788 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 826 (931)
++.+..||+++|+++..- .+...+.+..+....|.+.
T Consensus 254 ~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 254 LKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred cccccccchhhccccccc--cccccchHHHhccCcchhc
Confidence 999999999999998543 2455567777888888765
No 43
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.64 E-value=3.6e-08 Score=69.68 Aligned_cols=40 Identities=45% Similarity=0.907 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhhcCC-CCCCCCCCCCCCC-CCCcCccceEec
Q 002360 14 ESEREALLKLKHDLR-DPSHRLASWIGDN-GDCCKWGGVLCG 53 (931)
Q Consensus 14 ~~~~~~ll~~k~~~~-d~~~~l~~w~~~~-~~~c~w~g~~c~ 53 (931)
++|++||++||+++. |+...+++|...+ .+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 689999999999998 5778999999542 799999999995
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.59 E-value=1.4e-09 Score=118.81 Aligned_cols=197 Identities=27% Similarity=0.317 Sum_probs=126.4
Q ss_pred CCCCEEecCCCcceecC-CCcccCCCCCCEEEccCCcCccccchhhccC-CCCcEEecCCCccc----------ccCchh
Q 002360 576 PRLRTLNLGNNNFTGSL-PMSIGTLTSLRSLNLRNNRLSGVIPTSFKNF-SILEALDVGENELV----------GSIPTW 643 (931)
Q Consensus 576 ~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~N~l~----------~~~p~~ 643 (931)
++++.|.+-.-.-.+.. |-.+....+|++|.+.++.+... ..+..+ ..|+.|.- +|.+. |.+...
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNS 160 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccc
Confidence 34444444333222222 55666788999999999998741 112111 23444322 22221 111111
Q ss_pred HHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCcccc
Q 002360 644 IGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVE 723 (931)
Q Consensus 644 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~ 723 (931)
. -...|...+.+.|.+. .+..++.-++.|+.|||++|+++..- .+
T Consensus 161 ~--~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~L------------------------------ 205 (1096)
T KOG1859|consen 161 P--VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NL------------------------------ 205 (1096)
T ss_pred h--hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HH------------------------------
Confidence 1 1235777788888877 56667777889999999999987221 12
Q ss_pred ceeEEeecchhhhhhhccceeEEEcccCcccccCCc-cccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCc
Q 002360 724 DTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPV-EVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS 802 (931)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~ 802 (931)
..++.|+.|||++|.++ .+|. ...++. |+.|+|++|.++. .- .+.+|++|+.||+|+|-|+
T Consensus 206 --------------r~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t-L~-gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 206 --------------RRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT-LR-GIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred --------------Hhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh-hh-hHHhhhhhhccchhHhhhh
Confidence 23455689999999998 4443 233444 9999999999983 32 4789999999999999988
Q ss_pred ccCc-ccccCCCCCCeeeCCCcccccc
Q 002360 803 GQIP-QSMSNLSFLNYLNLSNNNLNGE 828 (931)
Q Consensus 803 ~~~p-~~l~~l~~L~~L~ls~N~l~g~ 828 (931)
+.-. .-+..|.+|+.|+|.+|++.+-
T Consensus 268 ~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 268 EHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred cchhhhHHHHHHHHHHHhhcCCccccC
Confidence 6521 2356678899999999999874
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.46 E-value=6.8e-09 Score=89.93 Aligned_cols=85 Identities=25% Similarity=0.386 Sum_probs=41.6
Q ss_pred eEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCc
Q 002360 744 RSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNN 823 (931)
Q Consensus 744 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N 823 (931)
+.++|++|.++ .+|+++..++.|+.||++.|.+. ..|..+..|.++-.||..+|.+. .||..+---+.....++.++
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne 156 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE 156 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence 44555555554 44555555555555555555555 44444445555555555555554 34433222233333444444
Q ss_pred cccccCCC
Q 002360 824 NLNGEIPS 831 (931)
Q Consensus 824 ~l~g~ip~ 831 (931)
++.+..|.
T Consensus 157 pl~~~~~~ 164 (177)
T KOG4579|consen 157 PLGDETKK 164 (177)
T ss_pred cccccCcc
Confidence 55554443
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.44 E-value=8.2e-09 Score=112.92 Aligned_cols=109 Identities=29% Similarity=0.366 Sum_probs=82.9
Q ss_pred hccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCee
Q 002360 739 ILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYL 818 (931)
Q Consensus 739 ~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L 818 (931)
.++.++.||||+|+++..- .+..|+.|++|||++|.++ .+|..-..--.|..|.+++|.++.. ..+.+|++|+.|
T Consensus 185 ll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~LksL~~L 259 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIENLKSLYGL 259 (1096)
T ss_pred HHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHHhhhhhhcc
Confidence 3566799999999998543 7889999999999999999 6775322223499999999999844 357899999999
Q ss_pred eCCCccccccCC--CCCccCcccccccCCCCCCCCC
Q 002360 819 NLSNNNLNGEIP--SSTQLQSFDASSFAGNDLCGAP 852 (931)
Q Consensus 819 ~ls~N~l~g~ip--~~~~~~~~~~~~~~~n~l~~~~ 852 (931)
|+++|-|++--- .-..+..+....++||++|..|
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 999998876311 1123444556679999998654
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=7e-09 Score=101.76 Aligned_cols=158 Identities=28% Similarity=0.310 Sum_probs=85.3
Q ss_pred CCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCCCeE
Q 002360 94 HLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHL 173 (931)
Q Consensus 94 ~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L 173 (931)
.|++||||...++..++...+..+.+|+-|.|.++.+.+.+-..+.+-.+|+.|+|+.+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s-------------------- 245 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS-------------------- 245 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc--------------------
Confidence 477788887777655566667777888888888887776666677777777777777653
Q ss_pred EccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCcc-ccCC-CCCCCEEEccCCcCCC---CCcccccCCCCCCEEE
Q 002360 174 YISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLL-SSAN-FSSLTTLDLSGNQFQG---QIPSRLGNLTSLKHLD 248 (931)
Q Consensus 174 ~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~-l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~ 248 (931)
--........+.+++.|++|++++|.+...... ...+ -++|+.|++++++-.- .+.--..++++|.+||
T Consensus 246 ------G~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LD 319 (419)
T KOG2120|consen 246 ------GFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLD 319 (419)
T ss_pred ------ccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeec
Confidence 111112233455677777777777765433211 1111 1455666666553210 0111123445555555
Q ss_pred cCCCc-ccccccccccCCCCCCEEeccCCc
Q 002360 249 LYSNQ-FNSAVLGWLSKLNDLEVLSLEDNR 277 (931)
Q Consensus 249 L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~ 277 (931)
|++|. ++......|.+++.|++|.++.|.
T Consensus 320 LSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 320 LSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred cccccccCchHHHHHHhcchheeeehhhhc
Confidence 55443 222222233444455555554443
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.4e-08 Score=99.59 Aligned_cols=158 Identities=19% Similarity=0.208 Sum_probs=79.0
Q ss_pred CCCEEEccCCcCCCC-CcccccCCCCCCEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEE
Q 002360 219 SLTTLDLSGNQFQGQ-IPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLL 297 (931)
Q Consensus 219 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 297 (931)
.|++|||+...|+.. +..-+..+.+|+.|.+.++++.+.+...+++-.+|+.|+++.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm---------------------- 243 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM---------------------- 243 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc----------------------
Confidence 355555555544421 111233445555555555555555555555555555555554
Q ss_pred ccCCCCCcccC-CcccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccc---cccccccCCCCCCCE
Q 002360 298 LSWNDELGGKI-PTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIF---GHLTNQLGQFKRLNF 373 (931)
Q Consensus 298 L~~n~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~ 373 (931)
+..++... .-.+.+++.|..|+++++.+........-...+ ++|+.|+++++.-. ..+..-...+++|..
T Consensus 244 ---~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his---e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~ 317 (419)
T KOG2120|consen 244 ---CSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS---ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVH 317 (419)
T ss_pred ---ccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc---hhhhhhhhhhhHhhhhhhHHHHHHHhCCceee
Confidence 43222211 112334444444444444444333222211111 56777777776521 111112356788888
Q ss_pred EeccCCc-CCcCccccccCCCCCCEEEccCCc
Q 002360 374 LGLSNNQ-MDGSIPLSLGQMANLESLDLSNNK 404 (931)
Q Consensus 374 L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~ 404 (931)
|||++|. ++...-..|.+++.|++|.++.|-
T Consensus 318 LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 318 LDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred eccccccccCchHHHHHHhcchheeeehhhhc
Confidence 8888764 333333456677888888888876
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.26 E-value=1.4e-07 Score=91.63 Aligned_cols=90 Identities=21% Similarity=0.128 Sum_probs=40.4
Q ss_pred ccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccc-----cCCcccCCCCCCEEecCCCcceec----CCC
Q 002360 524 LLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEG-----IPDCWMNWPRLRTLNLGNNNFTGS----LPM 594 (931)
Q Consensus 524 ~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~ 594 (931)
+.|+.+++..|++....-......+..-..|+++.+..|.|... +-..+..+.+|+.|||.+|-++.. +..
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~ 236 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD 236 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence 34555555555554332222222222234566666666655321 111223345666666666655521 111
Q ss_pred cccCCCCCCEEEccCCcCc
Q 002360 595 SIGTLTSLRSLNLRNNRLS 613 (931)
Q Consensus 595 ~~~~l~~L~~L~L~~n~l~ 613 (931)
.+...+.|+.|.+..|-++
T Consensus 237 al~~W~~lrEL~lnDClls 255 (388)
T COG5238 237 ALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred Hhcccchhhhccccchhhc
Confidence 2223334555555555554
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=5.6e-07 Score=88.69 Aligned_cols=88 Identities=20% Similarity=0.190 Sum_probs=51.8
Q ss_pred CCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCC-CcccccCCCCC
Q 002360 166 GLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQ-IPSRLGNLTSL 244 (931)
Q Consensus 166 ~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L 244 (931)
..+.++.+|+.+|.+++..++...+..+|.|++|+++.|++.......-....+|++|-|.+..+.-. .-..+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34556666666666666666666666777777777777766554332223456677777766655422 12234556666
Q ss_pred CEEEcCCCc
Q 002360 245 KHLDLYSNQ 253 (931)
Q Consensus 245 ~~L~L~~n~ 253 (931)
+.|.++.|.
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 666666663
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=2e-07 Score=80.96 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=33.8
Q ss_pred eEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCccccc
Q 002360 744 RSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMS 810 (931)
Q Consensus 744 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~ 810 (931)
+.|+++.|.+. ..|+.+..|.++..|+..+|.+. +||-.+-.-+..-..++.++.+.+.-|..+.
T Consensus 103 r~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 103 RSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ 167 (177)
T ss_pred hhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence 45555555555 44555555666666666666665 5554322222222334455666655554433
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=1.4e-05 Score=85.44 Aligned_cols=77 Identities=14% Similarity=0.178 Sum_probs=51.7
Q ss_pred ccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCc
Q 002360 596 IGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASL 675 (931)
Q Consensus 596 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 675 (931)
+..+..++.|++++|.++. +|. -.++|+.|.+++|.-...+|..+ .++|+.|++++|.....+| ++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccc------ccc
Confidence 4456788999999998773 452 23568999998865444777654 3578899998884322444 346
Q ss_pred CEEEccCCcc
Q 002360 676 QILDVAYNSL 685 (931)
Q Consensus 676 ~~L~Ls~N~l 685 (931)
+.|++++|..
T Consensus 115 e~L~L~~n~~ 124 (426)
T PRK15386 115 RSLEIKGSAT 124 (426)
T ss_pred ceEEeCCCCC
Confidence 7777776654
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=1.2e-06 Score=86.32 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=32.7
Q ss_pred CCCCCEEeccCCcCCcCc-cccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCcee
Q 002360 368 FKRLNFLGLSNNQMDGSI-PLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSL 430 (931)
Q Consensus 368 l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 430 (931)
+|++..+-+..|++...- ...+..+|.+.-|+|+.+++-.-..-..+.+++.|..+.+..+.+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence 556666666666554321 223444556666666666664333333444555555555554443
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=6.9e-06 Score=58.07 Aligned_cols=36 Identities=33% Similarity=0.614 Sum_probs=16.7
Q ss_pred CCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCc
Q 002360 766 GLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS 802 (931)
Q Consensus 766 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~ 802 (931)
+|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3445555555554 34444455555555555555544
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.91 E-value=7.7e-06 Score=79.79 Aligned_cols=164 Identities=21% Similarity=0.084 Sum_probs=82.7
Q ss_pred cCCCCCCCEEEccCCcccc--cccCccccCCCCCCCeEEccCcccCCCCchH-----------HHhccCCCCCEEEcCCC
Q 002360 138 LGNLSNLQYLDLSGVYFEL--HAETISWLSGLSLLEHLYISFVNLSKASDSL-----------LVINSLHSLKELKLSFC 204 (931)
Q Consensus 138 ~~~L~~L~~L~Ls~n~~~~--~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-----------~~l~~l~~L~~L~Ls~n 204 (931)
+-+|++|+..+||.|-+.. .+.....+.+-+.|+||.+++|.+....... .....-|.|++.....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 3455555555555554421 1222223445555555555555554442211 11234566666666666
Q ss_pred CCCCCCccc----cCCCCCCCEEEccCCcCCCCC-----cccccCCCCCCEEEcCCCccccccc----ccccCCCCCCEE
Q 002360 205 ELHHFPLLS----SANFSSLTTLDLSGNQFQGQI-----PSRLGNLTSLKHLDLYSNQFNSAVL----GWLSKLNDLEVL 271 (931)
Q Consensus 205 ~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L 271 (931)
++...+... +..-.+|+++.+..|.|...- ...+..+.+|+.|++..|.++.... ..+...+.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 665554321 122246667777666654221 1123445677777777776654322 233344557777
Q ss_pred eccCCccccccCccc-----cCCCCCccEEEccCC
Q 002360 272 SLEDNRLQGDISSLG-----LDNLTSIQKLLLSWN 301 (931)
Q Consensus 272 ~L~~n~l~~~~~~~~-----l~~l~~L~~L~L~~n 301 (931)
.+.+|-++..-.... -...|+|..|...+|
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchh
Confidence 777776653222111 123567777777777
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=1.8e-05 Score=55.99 Aligned_cols=38 Identities=45% Similarity=0.724 Sum_probs=32.6
Q ss_pred CCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccc
Q 002360 789 RSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNG 827 (931)
Q Consensus 789 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 827 (931)
++|++|++++|+++ .+|..++++++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 57999999999999 567789999999999999999873
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.76 E-value=1.6e-06 Score=89.73 Aligned_cols=233 Identities=17% Similarity=0.110 Sum_probs=109.4
Q ss_pred CCcEeeCCCCCCCC-CCchhhhhcCCCCceeecccccc-cccC-CcccCCCCCCCEEEccCCc-ccccccCccccCCCCC
Q 002360 94 HLVHLDLSGNDFQG-IQIPKYLASLVNLRYLNLSQARF-TGMI-PHQLGNLSNLQYLDLSGVY-FELHAETISWLSGLSL 169 (931)
Q Consensus 94 ~L~~L~Ls~n~~~~-~~l~~~l~~l~~L~~L~Ls~n~~-~~~~-p~~~~~L~~L~~L~Ls~n~-~~~~~~~~~~l~~l~~ 169 (931)
.|+.|.+.++.-.+ .++-..-.+++++++|++.+|.. ++.. -..-..+.+|++|+|..|. ++... ....-..+++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~-Lk~la~gC~k 217 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVS-LKYLAEGCRK 217 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHH-HHHHHHhhhh
Confidence 45555665553221 12334445566666666666542 1111 1112346666666666532 11100 0011345666
Q ss_pred CCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCc--cccCCCCCCCEEEccCCcC-CCCCcccc-cCCCCCC
Q 002360 170 LEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL--LSSANFSSLTTLDLSGNQF-QGQIPSRL-GNLTSLK 245 (931)
Q Consensus 170 L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l-~~~~~~~l-~~l~~L~ 245 (931)
|++++++++.-..-........++..++.+.+.+|.-.+... ..-..+..+.++++..|.. ++..-..+ ..+..||
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 666666665443333333334556666666666553221111 1112344455566555532 22111111 2456777
Q ss_pred EEEcCCCcc-cccccccc-cCCCCCCEEeccCCccccccCcccc-CCCCCccEEEccCCCCCccc-CCcccCCCCCCcEE
Q 002360 246 HLDLYSNQF-NSAVLGWL-SKLNDLEVLSLEDNRLQGDISSLGL-DNLTSIQKLLLSWNDELGGK-IPTSFGKLCKLTSF 321 (931)
Q Consensus 246 ~L~L~~n~l-~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~l-~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L 321 (931)
.|+.+++.. +......+ .+..+|++|.++.++--++.-...+ .+++.|+.+++..+..+... +.+.-.+++.|+.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 777776543 22222222 3567788888877764322222212 35667777777776333222 22233355566666
Q ss_pred EcCCCc
Q 002360 322 SMASTK 327 (931)
Q Consensus 322 ~l~~~~ 327 (931)
.++++.
T Consensus 378 slshce 383 (483)
T KOG4341|consen 378 SLSHCE 383 (483)
T ss_pred Chhhhh
Confidence 655554
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.57 E-value=0.0002 Score=76.77 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=63.0
Q ss_pred ccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCC-cccccCchhHHhhcCc
Q 002360 572 WMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGEN-ELVGSIPTWIGERFSR 650 (931)
Q Consensus 572 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~~l~~ 650 (931)
+..+.+++.|++++|.++ .+| .+ .++|++|.+++|.-...+|+.+ .++|+.|++++| .+. .+|. +
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~-------s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE-------S 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc-------c
Confidence 445688999999999888 556 22 3579999999865555677655 368999999999 444 5553 5
Q ss_pred CcEEEccCccccccCCcccCCC-CCcCEEEccC
Q 002360 651 LMILILRSNKFHGDFPIQLCRL-ASLQILDVAY 682 (931)
Q Consensus 651 L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~ 682 (931)
|+.|+++++.... +..+ ++|+.|.+.+
T Consensus 114 Le~L~L~~n~~~~-----L~~LPssLk~L~I~~ 141 (426)
T PRK15386 114 VRSLEIKGSATDS-----IKNVPNGLTSLSINS 141 (426)
T ss_pred cceEEeCCCCCcc-----cccCcchHhheeccc
Confidence 7788887765431 1122 2456666644
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=4.4e-05 Score=89.11 Aligned_cols=151 Identities=25% Similarity=0.315 Sum_probs=91.7
Q ss_pred cCCcEeeCCCCCCCCCCchhhh-hcCCCCceeeccccccccc-CCcccCCCCCCCEEEccCCcccccccCccccCCCCCC
Q 002360 93 KHLVHLDLSGNDFQGIQIPKYL-ASLVNLRYLNLSQARFTGM-IPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLL 170 (931)
Q Consensus 93 ~~L~~L~Ls~n~~~~~~l~~~l-~~l~~L~~L~Ls~n~~~~~-~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L 170 (931)
.+|++||++|...-....|..+ ..||.|+.|.+++-.+... .-....++++|+.||+|+++++.+ ..++.|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhccccH
Confidence 4677777777543322233333 3467777777777555321 223345677777777777776655 235777777
Q ss_pred CeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCc------cccCCCCCCCEEEccCCcCCCCCcccc-cCCCC
Q 002360 171 EHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL------LSSANFSSLTTLDLSGNQFQGQIPSRL-GNLTS 243 (931)
Q Consensus 171 ~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~ 243 (931)
+.|.+.+-.+....+.. .+-.+++|+.||+|.......+. +.-..+|+|+.||.+++.+....-+.+ ...++
T Consensus 198 q~L~mrnLe~e~~~~l~-~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLI-DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN 276 (699)
T ss_pred HHHhccCCCCCchhhHH-HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence 77777777776654433 34568888888888776554441 122357899999999887765433322 23344
Q ss_pred CCEEE
Q 002360 244 LKHLD 248 (931)
Q Consensus 244 L~~L~ 248 (931)
|+.+.
T Consensus 277 L~~i~ 281 (699)
T KOG3665|consen 277 LQQIA 281 (699)
T ss_pred Hhhhh
Confidence 44443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.51 E-value=0.00018 Score=67.70 Aligned_cols=85 Identities=25% Similarity=0.206 Sum_probs=45.0
Q ss_pred cCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCC-CcccccCCCCCCEEEcCCCcccccc---cccccCCCC
Q 002360 192 SLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQ-IPSRLGNLTSLKHLDLYSNQFNSAV---LGWLSKLND 267 (931)
Q Consensus 192 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~ 267 (931)
.++.|.+|.+++|+|+.+.+..-.-+++|.+|.+.+|.+... .-.-+..++.|+.|.+-+|.++... .-.+..+++
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~ 141 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPS 141 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCc
Confidence 455555555666666655554444555666666666655421 0122455566666666666554321 223445556
Q ss_pred CCEEeccCC
Q 002360 268 LEVLSLEDN 276 (931)
Q Consensus 268 L~~L~L~~n 276 (931)
|++||.+..
T Consensus 142 l~~LDF~kV 150 (233)
T KOG1644|consen 142 LRTLDFQKV 150 (233)
T ss_pred ceEeehhhh
Confidence 666655544
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.46 E-value=1.1e-05 Score=83.91 Aligned_cols=265 Identities=22% Similarity=0.165 Sum_probs=153.7
Q ss_pred ccCccCCcEeeCCCCC-CCCCCchhhhhcCCCCceeeccccc-ccccCC-cccCCCCCCCEEEccCCcccccccCccccC
Q 002360 89 LLELKHLVHLDLSGND-FQGIQIPKYLASLVNLRYLNLSQAR-FTGMIP-HQLGNLSNLQYLDLSGVYFELHAETISWLS 165 (931)
Q Consensus 89 l~~l~~L~~L~Ls~n~-~~~~~l~~~l~~l~~L~~L~Ls~n~-~~~~~p-~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~ 165 (931)
..++++++.|++.++. ++....-..-..++.|++|+|..|. ++...- .-...+++|++|+++.|.--.-...-....
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 4578888888888874 4443333344667889999999853 332222 234578899999999875322111112245
Q ss_pred CCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCC-CCCCCcc-ccCCCCCCCEEEccCCcCCCC-Ccccc-cCC
Q 002360 166 GLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCE-LHHFPLL-SSANFSSLTTLDLSGNQFQGQ-IPSRL-GNL 241 (931)
Q Consensus 166 ~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~-~~~~l-~~l 241 (931)
++..++.+.+.++.-.........-+.++.+.++++..|. +++.... .-..+..|+.|+.+++.-.+. .-.++ .+.
T Consensus 240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~ 319 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC 319 (483)
T ss_pred cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence 6666777766655433333333334456667777766664 3333221 123567788888877654321 11222 355
Q ss_pred CCCCEEEcCCCc-ccccccccc-cCCCCCCEEeccCCccccccC-ccccCCCCCccEEEccCCCCCcccCCc----ccCC
Q 002360 242 TSLKHLDLYSNQ-FNSAVLGWL-SKLNDLEVLSLEDNRLQGDIS-SLGLDNLTSIQKLLLSWNDELGGKIPT----SFGK 314 (931)
Q Consensus 242 ~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~-~~~l~~l~~L~~L~L~~n~~~~~~~~~----~~~~ 314 (931)
.+|+.|.++.++ ++..-...+ .+.+.|+.+++..+....+-. ...-.+++.|+++.+++|..+++..-. .-..
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 788888888776 333222223 256778888888775532221 111346788888888888555544222 2234
Q ss_pred CCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCccc
Q 002360 315 LCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQI 357 (931)
Q Consensus 315 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l 357 (931)
+..|..+.++++..... ..+..+..| ++|+.+++.+++-
T Consensus 400 ~~~l~~lEL~n~p~i~d--~~Le~l~~c--~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITD--ATLEHLSIC--RNLERIELIDCQD 438 (483)
T ss_pred ccccceeeecCCCCchH--HHHHHHhhC--cccceeeeechhh
Confidence 66788888888765432 223333333 6888888888763
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.43 E-value=0.0001 Score=86.05 Aligned_cols=151 Identities=25% Similarity=0.301 Sum_probs=106.6
Q ss_pred CCCceeeccccccc-ccCCcccC-CCCCCCEEEccCCcccccccCccccCCCCCCCeEEccCcccCCCCchHHHhccCCC
Q 002360 118 VNLRYLNLSQARFT-GMIPHQLG-NLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHS 195 (931)
Q Consensus 118 ~~L~~L~Ls~n~~~-~~~p~~~~-~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~ 195 (931)
.+|++||+++.... ..-|..++ .|+.|+.|.+++-.+... +....+.++++|..||+|+++++.+ ..+..+++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNISNL----SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch-hHHHHhhccCccceeecCCCCccCc----HHHhcccc
Confidence 67999999986532 22333443 589999999987543221 1233468899999999999999987 45789999
Q ss_pred CCEEEcCCCCCCCC-CccccCCCCCCCEEEccCCcCCCCC--c----ccccCCCCCCEEEcCCCcccccccccc-cCCCC
Q 002360 196 LKELKLSFCELHHF-PLLSSANFSSLTTLDLSGNQFQGQI--P----SRLGNLTSLKHLDLYSNQFNSAVLGWL-SKLND 267 (931)
Q Consensus 196 L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~ 267 (931)
|++|.+.+=.+... ....+.++++|++||+|........ . +.-..+|+|+.||.+++.+.....+.+ ..-++
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN 276 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence 99999988877763 3466788999999999987665322 1 112358999999999988866543332 33445
Q ss_pred CCEEec
Q 002360 268 LEVLSL 273 (931)
Q Consensus 268 L~~L~L 273 (931)
|+.+.+
T Consensus 277 L~~i~~ 282 (699)
T KOG3665|consen 277 LQQIAA 282 (699)
T ss_pred Hhhhhh
Confidence 554443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.42 E-value=0.00013 Score=68.55 Aligned_cols=106 Identities=25% Similarity=0.227 Sum_probs=61.6
Q ss_pred CCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCCCeE
Q 002360 94 HLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHL 173 (931)
Q Consensus 94 ~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L 173 (931)
....+||++|.+... ..|.++++|.+|.|++|+|+.+.|.--..+++|+.|.|.+|.+..+.+.
T Consensus 43 ~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl------------- 106 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL------------- 106 (233)
T ss_pred ccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-------------
Confidence 345566666666532 3456666677777777766655554444455666666666655443221
Q ss_pred EccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCc---cccCCCCCCCEEEccCCc
Q 002360 174 YISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL---LSSANFSSLTTLDLSGNQ 229 (931)
Q Consensus 174 ~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~ 229 (931)
..+..+|.|++|.+-+|....... ..+..+|+|++||...-.
T Consensus 107 --------------~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 107 --------------DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred --------------chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 123455666666666665554432 345677888888877543
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.41 E-value=7.8e-05 Score=73.30 Aligned_cols=114 Identities=26% Similarity=0.252 Sum_probs=76.1
Q ss_pred eeecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccc--cccccCCcccCCCCCCCEEEccCCcccccccC
Q 002360 83 GKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQA--RFTGMIPHQLGNLSNLQYLDLSGVYFELHAET 160 (931)
Q Consensus 83 ~~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n--~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~ 160 (931)
|.+....-.+..|+.|++.+..++.. ..+..+++|+.|.++.| ++++.++....++++|++|++++|++.. ...
T Consensus 33 g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lst 108 (260)
T KOG2739|consen 33 GKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LST 108 (260)
T ss_pred CCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccc
Confidence 34555555566777777777777633 35677889999999999 6776677777778999999999998875 344
Q ss_pred ccccCCCCCCCeEEccCcccCCCCchH-HHhccCCCCCEEE
Q 002360 161 ISWLSGLSLLEHLYISFVNLSKASDSL-LVINSLHSLKELK 200 (931)
Q Consensus 161 ~~~l~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~L~~L~ 200 (931)
+..+..+.+|..|++.+|..+...+.. ..|.-+++|+.|+
T Consensus 109 l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 109 LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 444666677777777776666553322 2233344444443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.12 E-value=0.0016 Score=59.65 Aligned_cols=122 Identities=19% Similarity=0.223 Sum_probs=48.4
Q ss_pred CcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcC
Q 002360 570 DCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFS 649 (931)
Q Consensus 570 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~ 649 (931)
.+|.++++|+.+.+.+ .+.......|.++++|+.+.+.++ +.......|.++++++.+.+.+ .+. .++...+..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence 3455555566666553 344344455555656666666553 4444445555665566666654 322 34444443456
Q ss_pred cCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCcccccccc
Q 002360 650 RLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSA 698 (931)
Q Consensus 650 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 698 (931)
+|+.+++..+ +...-...+.+. .|+.+.+.. .+......+|.++++
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK 127 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence 6666666543 333334445554 666666554 333333344544443
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.86 E-value=0.0028 Score=57.95 Aligned_cols=119 Identities=18% Similarity=0.201 Sum_probs=67.2
Q ss_pred CCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEE
Q 002360 550 FSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEAL 629 (931)
Q Consensus 550 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 629 (931)
.+++|+.+.+.. .+..+...+|.++++|+.+++.++ +.......|.++++++.+.+.+ .+.......|..+++|+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 356788888875 577777778888888999999875 6655666788888899999976 5554556678889999999
Q ss_pred ecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCc
Q 002360 630 DVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASL 675 (931)
Q Consensus 630 ~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 675 (931)
++..+ +. .++...+.++ +|+.+.+.. .+...-...|.++++|
T Consensus 87 ~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 87 DIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 99776 54 5666666565 888888876 4443445566666555
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.83 E-value=0.00045 Score=68.08 Aligned_cols=109 Identities=24% Similarity=0.237 Sum_probs=52.5
Q ss_pred hhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCCCeEEccCcccCCCCchHHHhcc
Q 002360 113 YLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINS 192 (931)
Q Consensus 113 ~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~ 192 (931)
..-.+..|+.|++.+..++.. ..+-.|++|++|+++.|+............ .
T Consensus 38 l~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e--------------------------~ 89 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAE--------------------------K 89 (260)
T ss_pred ccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhh--------------------------h
Confidence 334455566666666555421 234456666666666664332222222223 3
Q ss_pred CCCCCEEEcCCCCCCCCC-ccccCCCCCCCEEEccCCcCCCCC---cccccCCCCCCEEEc
Q 002360 193 LHSLKELKLSFCELHHFP-LLSSANFSSLTTLDLSGNQFQGQI---PSRLGNLTSLKHLDL 249 (931)
Q Consensus 193 l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L 249 (931)
+|+|++|++++|++..+. ...+..+.+|..|++.+|..+... -..|.-+++|+.|+-
T Consensus 90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 355555555555544322 123444555666666665544311 122444566666553
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.00025 Score=69.80 Aligned_cols=16 Identities=44% Similarity=0.385 Sum_probs=6.9
Q ss_pred cCCCCCCEEEcCCCcc
Q 002360 239 GNLTSLKHLDLYSNQF 254 (931)
Q Consensus 239 ~~l~~L~~L~L~~n~l 254 (931)
.++++|+.|.|..|..
T Consensus 85 knlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPC 100 (388)
T ss_pred hcCchhhhHhhccCCc
Confidence 3444444444444433
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.00052 Score=67.65 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=27.1
Q ss_pred ccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcc
Q 002360 92 LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYF 154 (931)
Q Consensus 92 l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~ 154 (931)
+...+.|+.=|+.+++++ ...+++.|++|.||-|.|+.. ..+..|++|+.|.|..|.|
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I 75 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCI 75 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccc
Confidence 344455555555555432 234455555555555555422 1234444444444444443
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.84 E-value=0.0038 Score=36.54 Aligned_cols=19 Identities=53% Similarity=0.805 Sum_probs=9.1
Q ss_pred CCEEeccCCcCcccCccccc
Q 002360 791 IESLDFSANQLSGQIPQSMS 810 (931)
Q Consensus 791 L~~LdLs~N~l~~~~p~~l~ 810 (931)
|++||+++|+++ .+|.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 445555555554 4444443
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.68 E-value=0.0013 Score=75.94 Aligned_cols=35 Identities=31% Similarity=0.222 Sum_probs=17.4
Q ss_pred CCCCceeeccccccccc--CCcccCCCCCCCEEEccC
Q 002360 117 LVNLRYLNLSQARFTGM--IPHQLGNLSNLQYLDLSG 151 (931)
Q Consensus 117 l~~L~~L~Ls~n~~~~~--~p~~~~~L~~L~~L~Ls~ 151 (931)
++.|+.|.+..+.-... +-.....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 45566665555532222 223344555666666654
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.60 E-value=0.0023 Score=73.94 Aligned_cols=177 Identities=25% Similarity=0.134 Sum_probs=104.4
Q ss_pred cCccCCcEeeCCCC-CCCCCCchhhhhcCCCCceeecccc-cccccC----CcccCCCCCCCEEEccCCcccccccCccc
Q 002360 90 LELKHLVHLDLSGN-DFQGIQIPKYLASLVNLRYLNLSQA-RFTGMI----PHQLGNLSNLQYLDLSGVYFELHAETISW 163 (931)
Q Consensus 90 ~~l~~L~~L~Ls~n-~~~~~~l~~~l~~l~~L~~L~Ls~n-~~~~~~----p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~ 163 (931)
..++.|+.|.+.++ .+....+-.....+++|+.|+++++ ...... ......+.+|+.|+++++.. .....+..
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-isd~~l~~ 263 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL-VTDIGLSA 263 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc-cCchhHHH
Confidence 34788999999877 3443223456788899999999873 222122 23445678999999998763 11122222
Q ss_pred c-CCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCC--ccccCCCCCCCEEEccCCcCCCCCcccccC
Q 002360 164 L-SGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFP--LLSSANFSSLTTLDLSGNQFQGQIPSRLGN 240 (931)
Q Consensus 164 l-~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 240 (931)
+ ..+++|++|.+..+.-.+..........++.|++|++++|...... .....++++|+.|.+.....
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~---------- 333 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG---------- 333 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------
Confidence 3 3388999999777764333455566678899999999988754221 11234466666655443321
Q ss_pred CCCCCEEEcCCCcc---cccccccccCCCCCCEEeccCCc
Q 002360 241 LTSLKHLDLYSNQF---NSAVLGWLSKLNDLEVLSLEDNR 277 (931)
Q Consensus 241 l~~L~~L~L~~n~l---~~~~~~~l~~l~~L~~L~L~~n~ 277 (931)
+..++.+.+.+... .....-....+++++.+.+..+.
T Consensus 334 c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 334 CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 33344443333221 11222234566677777776665
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.46 E-value=0.0051 Score=36.00 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=10.7
Q ss_pred CCEEEccCCcCcccCCcCccC
Q 002360 767 LQSLNLSHNLFTGRIPDNIGV 787 (931)
Q Consensus 767 L~~L~Ls~N~l~~~ip~~l~~ 787 (931)
|++|||++|+++ .+|..|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 455555555555 55554443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.80 E-value=0.00047 Score=77.15 Aligned_cols=186 Identities=20% Similarity=0.234 Sum_probs=97.8
Q ss_pred CcEEeCCCCCCCCCcchhHHh---ccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhh
Q 002360 468 LNDLDISSTRISDKIPRAFWN---SIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLI 544 (931)
Q Consensus 468 L~~L~Ls~n~i~~~~~~~~~~---~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~ 544 (931)
+..+.+.+|.+.+.....+.. ..+.|..|++++|.+. +..-..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~---------------------------------~~g~~~l 135 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG---------------------------------DEGARLL 135 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc---------------------------------cHhHHHH
Confidence 566677777766554443333 2344555555555543 3333333
Q ss_pred hccCCCC-CCccEEECcCCccccc----cCCcccCCCCCCEEecCCCccee----cCCCcc----cCCCCCCEEEccCCc
Q 002360 545 CQGENFS-KNIEFLKLSTNHFSEG----IPDCWMNWPRLRTLNLGNNNFTG----SLPMSI----GTLTSLRSLNLRNNR 611 (931)
Q Consensus 545 ~~~~~~~-~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~~----~~l~~L~~L~L~~n~ 611 (931)
+.++... ..+++|++..|.++.. +...+.....++.++++.|.+.. .++..+ ....++++|.+++|.
T Consensus 136 ~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~ 215 (478)
T KOG4308|consen 136 CEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCG 215 (478)
T ss_pred HhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcC
Confidence 3333332 4455556655555432 23344445566666666666531 112222 235667777777777
Q ss_pred Ccccc----chhhccCCC-CcEEecCCCcccccCchhHHhh---c-CcCcEEEccCccccccC----CcccCCCCCcCEE
Q 002360 612 LSGVI----PTSFKNFSI-LEALDVGENELVGSIPTWIGER---F-SRLMILILRSNKFHGDF----PIQLCRLASLQIL 678 (931)
Q Consensus 612 l~~~~----p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~~---l-~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L 678 (931)
++... ...+...+. +..|++.+|++.+..-..+... + ..+++++++.|.++..- ...+..++.++.+
T Consensus 216 ~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l 295 (478)
T KOG4308|consen 216 VTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEEL 295 (478)
T ss_pred cChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHh
Confidence 66321 122333444 5567777777654322222222 2 34577777777776542 3344556677788
Q ss_pred EccCCccc
Q 002360 679 DVAYNSLL 686 (931)
Q Consensus 679 ~Ls~N~l~ 686 (931)
.+++|.+.
T Consensus 296 ~l~~n~l~ 303 (478)
T KOG4308|consen 296 SLSNNPLT 303 (478)
T ss_pred hcccCccc
Confidence 88887775
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.12 E-value=0.00061 Score=76.23 Aligned_cols=166 Identities=24% Similarity=0.181 Sum_probs=116.2
Q ss_pred ccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccC----CcccCC-CCCCEEecCCCcceec----CCCcc
Q 002360 526 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIP----DCWMNW-PRLRTLNLGNNNFTGS----LPMSI 596 (931)
Q Consensus 526 l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~l-~~L~~L~Ls~n~l~~~----~p~~~ 596 (931)
+..+.+.+|.+.......++..+.....|+.|++++|.+.+... ..+... ..+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 56677778888877778888888889999999999999975321 223332 5678899999988744 44556
Q ss_pred cCCCCCCEEEccCCcCcc----ccchhhc----cCCCCcEEecCCCcccccCchhH---HhhcCc-CcEEEccCcccccc
Q 002360 597 GTLTSLRSLNLRNNRLSG----VIPTSFK----NFSILEALDVGENELVGSIPTWI---GERFSR-LMILILRSNKFHGD 664 (931)
Q Consensus 597 ~~l~~L~~L~L~~n~l~~----~~p~~~~----~l~~L~~L~L~~N~l~~~~p~~~---~~~l~~-L~~L~L~~n~l~~~ 664 (931)
.....++.++++.|.+.. .++..+. ...++++|.+.+|.++...-..+ ....++ +..|++.+|.+...
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 668899999999998841 2333344 47789999999998762211111 113344 77799999998754
Q ss_pred ----CCcccCCC-CCcCEEEccCCccccccCc
Q 002360 665 ----FPIQLCRL-ASLQILDVAYNSLLGTIPR 691 (931)
Q Consensus 665 ----~p~~l~~l-~~L~~L~Ls~N~l~~~~p~ 691 (931)
....+..+ ..++.++++.|.++..-..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~ 280 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVR 280 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchH
Confidence 23344455 6789999999999865443
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.01 E-value=0.09 Score=28.43 Aligned_cols=11 Identities=45% Similarity=0.733 Sum_probs=3.3
Q ss_pred CCEEEccCCcC
Q 002360 767 LQSLNLSHNLF 777 (931)
Q Consensus 767 L~~L~Ls~N~l 777 (931)
|+.|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.73 E-value=0.012 Score=56.73 Aligned_cols=83 Identities=18% Similarity=0.158 Sum_probs=60.8
Q ss_pred CCcEEEEEcCCCCCCCchhhhcccccceeecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCC
Q 002360 56 TGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIP 135 (931)
Q Consensus 56 ~~~v~~L~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p 135 (931)
-.+|+.||++.+ -.-.+...+..++.+..||++.|.+. .+|..++....++.+++..|..+ ..|
T Consensus 41 ~kr~tvld~~s~-------------r~vn~~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p 104 (326)
T KOG0473|consen 41 FKRVTVLDLSSN-------------RLVNLGKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQP 104 (326)
T ss_pred cceeeeehhhhh-------------HHHhhccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCC
Confidence 357888887764 12234445666777888888888877 46788888888888888887766 778
Q ss_pred cccCCCCCCCEEEccCCcc
Q 002360 136 HQLGNLSNLQYLDLSGVYF 154 (931)
Q Consensus 136 ~~~~~L~~L~~L~Ls~n~~ 154 (931)
.+++++++++++++-++.+
T Consensus 105 ~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 105 KSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred ccccccCCcchhhhccCcc
Confidence 8888888888888877653
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.28 E-value=0.12 Score=27.90 Aligned_cols=13 Identities=38% Similarity=0.744 Sum_probs=6.7
Q ss_pred CCCEEeccCCcCc
Q 002360 790 SIESLDFSANQLS 802 (931)
Q Consensus 790 ~L~~LdLs~N~l~ 802 (931)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 5666777777665
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.09 E-value=0.0088 Score=57.66 Aligned_cols=84 Identities=20% Similarity=0.211 Sum_probs=71.2
Q ss_pred ccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeee
Q 002360 740 LNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLN 819 (931)
Q Consensus 740 ~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ 819 (931)
....+.||++.|++. ..-..|.-++.|..||+|.|++. ..|..++.+..+..+++..|..+ ..|.++..++.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 344578999999986 45566777888899999999998 88888999999999999999988 7889999999999999
Q ss_pred CCCcccc
Q 002360 820 LSNNNLN 826 (931)
Q Consensus 820 ls~N~l~ 826 (931)
+-+|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9998865
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.74 E-value=0.41 Score=29.23 Aligned_cols=14 Identities=50% Similarity=0.684 Sum_probs=7.4
Q ss_pred CCCCEEeccCCcCc
Q 002360 789 RSIESLDFSANQLS 802 (931)
Q Consensus 789 ~~L~~LdLs~N~l~ 802 (931)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.74 E-value=0.41 Score=29.23 Aligned_cols=14 Identities=50% Similarity=0.684 Sum_probs=7.4
Q ss_pred CCCCEEeccCCcCc
Q 002360 789 RSIESLDFSANQLS 802 (931)
Q Consensus 789 ~~L~~LdLs~N~l~ 802 (931)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.31 E-value=0.55 Score=28.66 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=13.0
Q ss_pred CCCcEEecCCCcccccCchhHH
Q 002360 624 SILEALDVGENELVGSIPTWIG 645 (931)
Q Consensus 624 ~~L~~L~L~~N~l~~~~p~~~~ 645 (931)
++|+.|+|++|++. .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5665544
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.31 E-value=0.55 Score=28.66 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=13.0
Q ss_pred CCCcEEecCCCcccccCchhHH
Q 002360 624 SILEALDVGENELVGSIPTWIG 645 (931)
Q Consensus 624 ~~L~~L~L~~N~l~~~~p~~~~ 645 (931)
++|+.|+|++|++. .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5665544
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.84 E-value=0.18 Score=48.15 Aligned_cols=84 Identities=20% Similarity=0.142 Sum_probs=51.1
Q ss_pred CCCEEEcCCCcccccccccccCCCCCCEEeccCCccccccCcccc-CCCCCccEEEccCCCCCcccCCcccCCCCCCcEE
Q 002360 243 SLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGL-DNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSF 321 (931)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 321 (931)
.++.++-++..+..+...-+..++.++.|.+.+|.-.++.--..+ +-.++|+.|+++.|+.++......+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 455566666666555555556666666666666643222111111 1356788888888888877777777777777777
Q ss_pred EcCCC
Q 002360 322 SMAST 326 (931)
Q Consensus 322 ~l~~~ 326 (931)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 66543
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.70 E-value=0.23 Score=29.66 Aligned_cols=15 Identities=40% Similarity=0.698 Sum_probs=6.4
Q ss_pred CCCCEEeccCCcCcc
Q 002360 789 RSIESLDFSANQLSG 803 (931)
Q Consensus 789 ~~L~~LdLs~N~l~~ 803 (931)
++|++|||++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555443
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.69 E-value=0.35 Score=46.27 Aligned_cols=34 Identities=38% Similarity=0.485 Sum_probs=15.6
Q ss_pred CCCCEEEccCC-cCCCCCcccccCCCCCCEEEcCC
Q 002360 218 SSLTTLDLSGN-QFQGQIPSRLGNLTSLKHLDLYS 251 (931)
Q Consensus 218 ~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~ 251 (931)
++|+.|++++| +|+..--..+..+++|+.|.+.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 44555555544 23333233344555555555543
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.78 E-value=2.6 Score=25.77 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=10.0
Q ss_pred cCCCCEEeccCCcCc
Q 002360 788 MRSIESLDFSANQLS 802 (931)
Q Consensus 788 l~~L~~LdLs~N~l~ 802 (931)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.91 E-value=2.9 Score=25.46 Aligned_cols=13 Identities=46% Similarity=0.662 Sum_probs=6.9
Q ss_pred CCCEEEccCCcCc
Q 002360 766 GLQSLNLSHNLFT 778 (931)
Q Consensus 766 ~L~~L~Ls~N~l~ 778 (931)
+|+.|+.++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3455555555555
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=68.53 E-value=12 Score=41.04 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=13.6
Q ss_pred CCCcEEeCCCCCCCCCcchhH
Q 002360 466 KKLNDLDISSTRISDKIPRAF 486 (931)
Q Consensus 466 ~~L~~L~Ls~n~i~~~~~~~~ 486 (931)
+.+++++++.|.+.+..|..+
T Consensus 165 pr~r~~dls~npi~dkvpihl 185 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHL 185 (553)
T ss_pred chhhhhccCCCcccccCCccc
Confidence 456677777777766655444
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=61.24 E-value=6.2 Score=24.59 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=8.1
Q ss_pred CCCCEEeccCCcCc
Q 002360 789 RSIESLDFSANQLS 802 (931)
Q Consensus 789 ~~L~~LdLs~N~l~ 802 (931)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34566666666654
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=49.64 E-value=55 Score=36.13 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=17.7
Q ss_pred eEEEcccCcccccCC---ccccCCCCCCEEEccCCcCc
Q 002360 744 RSIDISMNNFSGEIP---VEVTNLQGLQSLNLSHNLFT 778 (931)
Q Consensus 744 ~~LdLs~N~l~~~ip---~~l~~l~~L~~L~Ls~N~l~ 778 (931)
..+.++.+.+....- ..+..-+.++.|++++|.-.
T Consensus 416 ~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 416 AELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred cCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 445566665542111 12233456666677766543
No 92
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=47.12 E-value=14 Score=33.85 Aligned_cols=36 Identities=19% Similarity=0.101 Sum_probs=15.4
Q ss_pred eeeehhhHHHHHHHHHhhhhhcccccccceeeeeec
Q 002360 883 LYVSMALGFVVGFWCFIGPLLSNKRWRYKYFHFLDG 918 (931)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 918 (931)
+++++++|+.+.+++++++++|+.+.|.+-..|++-
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~c~r~kktdfidS 85 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIFCIRRKKTDFIDS 85 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeEEEecccCccccC
Confidence 344555554444444433333333333333456553
No 93
>PF15102 TMEM154: TMEM154 protein family
Probab=46.29 E-value=25 Score=31.97 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=9.2
Q ss_pred HHHHhhhhhcccccccc
Q 002360 895 FWCFIGPLLSNKRWRYK 911 (931)
Q Consensus 895 ~~~~~~~~~~~~~~~~~ 911 (931)
++++++.+++.||||.+
T Consensus 72 Ll~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 72 LLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHheeEEeecccC
Confidence 33444445556677764
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=44.83 E-value=12 Score=50.31 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=28.3
Q ss_pred EccCCcCcccCCcCccCcCCCCEEeccCCcCccc
Q 002360 771 NLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQ 804 (931)
Q Consensus 771 ~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ 804 (931)
||++|+|+...+..|..+++|+.|+|++|.+.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 6889999866667788889999999999988764
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.38 E-value=17 Score=40.83 Aligned_cols=66 Identities=30% Similarity=0.264 Sum_probs=40.2
Q ss_pred cCCCCCEEEcCCCCCCCCCc--cccCCCCCCCEEEccCCcCCCCCcccccCC--CCCCEEEcCCCccccc
Q 002360 192 SLHSLKELKLSFCELHHFPL--LSSANFSSLTTLDLSGNQFQGQIPSRLGNL--TSLKHLDLYSNQFNSA 257 (931)
Q Consensus 192 ~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~ 257 (931)
+.+.+..+.|++|++..+.. ..-...|+|++|+|++|...-....++.++ ..|++|-+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 56677777777777665543 112345788888888883221222233333 3578888888887543
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=39.34 E-value=14 Score=41.29 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=40.8
Q ss_pred hccceeEEEcccCccccc--CCccccCCCCCCEEEccCC--cCcccCCcCccCc--CCCCEEeccCCcCccc
Q 002360 739 ILNLVRSIDISMNNFSGE--IPVEVTNLQGLQSLNLSHN--LFTGRIPDNIGVM--RSIESLDFSANQLSGQ 804 (931)
Q Consensus 739 ~~~~L~~LdLs~N~l~~~--ip~~l~~l~~L~~L~Ls~N--~l~~~ip~~l~~l--~~L~~LdLs~N~l~~~ 804 (931)
..+.+..+.|++|++-.. +...-..-+.|+.|+||+| .+. ...++..+ ..|++|-+.+|++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccc
Confidence 356678889999988531 1111233478899999999 443 22223333 4578899999988754
No 97
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=37.71 E-value=26 Score=23.95 Aligned_cols=21 Identities=14% Similarity=0.025 Sum_probs=9.2
Q ss_pred eeeehhhHHHHHHHHHhhhhh
Q 002360 883 LYVSMALGFVVGFWCFIGPLL 903 (931)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~ 903 (931)
+.++++++.++...+..+.++
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l~ 33 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFLF 33 (40)
T ss_pred EEEEEEechHHHHHHHHHHhh
Confidence 444555555544433333333
No 98
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=35.05 E-value=27 Score=21.15 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=8.8
Q ss_pred CCccEEEccCCCCCc
Q 002360 291 TSIQKLLLSWNDELG 305 (931)
Q Consensus 291 ~~L~~L~L~~n~~~~ 305 (931)
++|++|++++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 456666666664444
No 99
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=32.07 E-value=16 Score=32.32 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=11.0
Q ss_pred eeehhhHHHHHHHHHhhhhhc
Q 002360 884 YVSMALGFVVGFWCFIGPLLS 904 (931)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~ 904 (931)
++++++|+++|++++++.++|
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y 86 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISY 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHH
Confidence 345566666666555544333
No 100
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=23.72 E-value=40 Score=28.56 Aligned_cols=9 Identities=11% Similarity=0.342 Sum_probs=3.6
Q ss_pred eeehhhHHH
Q 002360 884 YVSMALGFV 892 (931)
Q Consensus 884 ~~~~~~~~~ 892 (931)
+++++++.+
T Consensus 68 iagi~vg~~ 76 (96)
T PTZ00382 68 IAGISVAVV 76 (96)
T ss_pred EEEEEeehh
Confidence 334344433
No 101
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.68 E-value=43 Score=45.56 Aligned_cols=32 Identities=38% Similarity=0.340 Sum_probs=28.8
Q ss_pred EcccCcccccCCccccCCCCCCEEEccCCcCc
Q 002360 747 DISMNNFSGEIPVEVTNLQGLQSLNLSHNLFT 778 (931)
Q Consensus 747 dLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 778 (931)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999777778899999999999999886
No 102
>PHA02707 hypothetical protein; Provisional
Probab=22.14 E-value=33 Score=21.65 Aligned_cols=7 Identities=71% Similarity=1.407 Sum_probs=3.0
Q ss_pred CcccccC
Q 002360 1 MINISLC 7 (931)
Q Consensus 1 ~~~~~~~ 7 (931)
|.|||+|
T Consensus 1 mlnfslc 7 (37)
T PHA02707 1 MLNFSLC 7 (37)
T ss_pred Ccceeee
Confidence 3444444
Done!