Query 002360
Match_columns 931
No_of_seqs 744 out of 4945
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 23:10:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002360.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002360hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.7E-90 1.9E-94 835.7 53.8 714 7-857 4-749 (768)
2 3rgz_A Protein brassinosteroid 100.0 6.2E-70 2.1E-74 660.1 47.5 622 84-828 91-743 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 5.9E-59 2E-63 559.9 51.8 601 84-831 18-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-57 6.1E-62 547.0 50.0 574 56-806 24-626 (680)
5 3t6q_A CD180 antigen; protein- 100.0 2.7E-54 9.3E-59 512.2 42.4 530 84-831 26-565 (606)
6 3t6q_A CD180 antigen; protein- 100.0 9.7E-53 3.3E-57 498.9 41.8 525 56-806 32-564 (606)
7 3j0a_A TOLL-like receptor 5; m 100.0 2E-52 6.8E-57 512.1 41.6 223 551-831 337-565 (844)
8 3vq2_A TLR4, TOLL-like recepto 100.0 3.9E-52 1.3E-56 493.8 40.4 537 172-831 15-563 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 5.8E-51 2E-55 483.7 40.8 519 93-806 32-562 (606)
10 4eco_A Uncharacterized protein 100.0 2.1E-51 7.3E-56 485.9 29.0 527 11-828 26-602 (636)
11 3j0a_A TOLL-like receptor 5; m 100.0 2E-50 6.7E-55 494.5 36.8 525 91-806 22-564 (844)
12 4ecn_A Leucine-rich repeat pro 100.0 2.9E-49 9.8E-54 473.4 32.5 513 8-827 262-865 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 2.5E-47 8.5E-52 449.5 37.5 515 172-833 11-538 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 8.4E-47 2.9E-51 445.0 37.8 505 84-807 21-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 2.9E-46 9.9E-51 437.9 30.2 201 575-831 309-515 (549)
16 2z81_A CD282 antigen, TOLL-lik 100.0 4.6E-45 1.6E-49 427.7 33.8 493 96-806 8-514 (549)
17 4g8a_A TOLL-like receptor 4; l 100.0 2.5E-44 8.5E-49 430.2 40.8 528 84-830 45-584 (635)
18 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-44 9.8E-49 417.6 22.9 469 197-830 3-485 (520)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-43 4.5E-48 412.0 26.4 448 84-806 14-485 (520)
20 4ecn_A Leucine-rich repeat pro 100.0 3E-43 1E-47 421.4 25.9 439 218-829 323-843 (876)
21 4eco_A Uncharacterized protein 100.0 1.9E-43 6.3E-48 418.0 20.5 490 242-849 81-600 (636)
22 4g8a_A TOLL-like receptor 4; l 100.0 2.5E-40 8.5E-45 395.6 40.6 536 173-850 36-582 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.7E-41 9.2E-46 395.7 26.3 471 194-831 31-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.5E-41 2.2E-45 392.4 28.3 463 60-806 34-514 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 1.3E-38 4.5E-43 359.5 26.6 62 89-152 7-68 (454)
26 3v47_A TOLL-like receptor 5B a 100.0 3E-38 1E-42 360.6 29.8 372 369-835 30-417 (455)
27 3v47_A TOLL-like receptor 5B a 100.0 1.4E-36 4.6E-41 346.9 32.2 377 242-691 30-413 (455)
28 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-37 3.7E-42 335.3 19.8 225 10-279 1-234 (313)
29 1jl5_A Outer protein YOPM; leu 100.0 2E-37 6.8E-42 349.8 22.5 198 552-832 215-417 (454)
30 3bz5_A Internalin-J, INLJ; leu 100.0 8.8E-35 3E-39 328.5 30.5 214 85-330 34-247 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 3.2E-35 1.1E-39 332.0 26.3 213 111-407 35-247 (457)
32 1ogq_A PGIP-2, polygalacturona 100.0 1.9E-35 6.6E-40 317.7 19.8 258 552-856 50-312 (313)
33 2id5_A Lingo-1, leucine rich r 100.0 2.8E-34 9.4E-39 329.5 25.1 235 551-830 103-337 (477)
34 1o6v_A Internalin A; bacterial 100.0 1.8E-33 6E-38 321.1 29.8 216 550-828 175-390 (466)
35 1o6v_A Internalin A; bacterial 100.0 6.7E-33 2.3E-37 316.3 31.9 192 551-803 198-389 (466)
36 2id5_A Lingo-1, leucine rich r 100.0 3.1E-33 1.1E-37 320.8 24.5 348 348-831 14-361 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 1.4E-31 4.9E-36 298.2 29.9 267 90-406 42-308 (390)
38 3o6n_A APL1; leucine-rich repe 100.0 5.6E-32 1.9E-36 301.5 25.5 332 368-850 44-376 (390)
39 3oja_B Anopheles plasmodium-re 100.0 8.8E-32 3E-36 316.5 25.8 334 368-852 50-384 (597)
40 4fmz_A Internalin; leucine ric 100.0 1.7E-30 5.8E-35 284.9 28.7 215 552-826 132-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 2.4E-30 8.2E-35 304.2 31.2 265 91-405 49-313 (597)
42 4fmz_A Internalin; leucine ric 100.0 1.1E-29 3.8E-34 278.3 31.1 306 89-430 40-345 (347)
43 1z7x_W Ribonuclease inhibitor; 100.0 5.6E-33 1.9E-37 317.7 -3.0 288 345-686 3-326 (461)
44 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-32 4.4E-37 314.7 -2.8 367 369-828 3-413 (461)
45 1xku_A Decorin; proteoglycan, 100.0 8.4E-29 2.9E-33 269.0 26.3 222 551-824 99-330 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 4.8E-29 1.6E-33 271.1 24.2 221 551-824 101-331 (332)
47 4fcg_A Uncharacterized protein 100.0 3.4E-30 1.2E-34 278.4 14.3 278 10-327 22-312 (328)
48 1xku_A Decorin; proteoglycan, 100.0 3.2E-28 1.1E-32 264.3 28.9 226 550-827 74-307 (330)
49 2ft3_A Biglycan; proteoglycan, 100.0 6.4E-28 2.2E-32 262.2 23.8 289 93-428 33-330 (332)
50 2z66_A Variable lymphocyte rec 100.0 5.7E-28 1.9E-32 259.5 20.6 253 526-830 9-265 (306)
51 4fcg_A Uncharacterized protein 100.0 3E-28 1E-32 263.1 18.3 227 551-826 80-314 (328)
52 3zyi_A Leucine-rich repeat-con 100.0 4.3E-27 1.5E-31 267.1 25.1 251 526-830 56-307 (452)
53 3zyj_A Leucine-rich repeat-con 99.9 7.1E-27 2.4E-31 264.3 24.6 251 526-830 45-296 (440)
54 1ozn_A Reticulon 4 receptor; N 99.9 3.2E-27 1.1E-31 250.7 19.3 136 552-688 32-168 (285)
55 2z66_A Variable lymphocyte rec 99.9 3.3E-27 1.1E-31 253.5 18.6 235 551-831 51-292 (306)
56 2z80_A TOLL-like receptor 2, v 99.9 1.3E-27 4.3E-32 262.2 15.2 258 552-831 52-319 (353)
57 1ozn_A Reticulon 4 receptor; N 99.9 1.8E-26 6.2E-31 244.8 22.0 230 554-831 13-243 (285)
58 3ogk_B Coronatine-insensitive 99.9 7.3E-29 2.5E-33 293.1 3.0 84 314-403 162-253 (592)
59 3ogk_B Coronatine-insensitive 99.9 2E-28 6.7E-33 289.5 6.6 389 314-828 110-528 (592)
60 1wwl_A Monocyte differentiatio 99.9 6E-28 2E-32 259.5 6.5 224 554-828 65-311 (312)
61 3o53_A Protein LRIM1, AGAP0063 99.9 2.7E-27 9.2E-32 255.0 8.9 222 551-831 57-281 (317)
62 3zyi_A Leucine-rich repeat-con 99.9 3.5E-25 1.2E-29 251.4 24.7 230 525-804 76-305 (452)
63 3o53_A Protein LRIM1, AGAP0063 99.9 2.9E-27 9.9E-32 254.8 6.3 269 526-857 12-284 (317)
64 3zyj_A Leucine-rich repeat-con 99.9 4.5E-25 1.5E-29 249.5 24.2 230 525-804 65-294 (440)
65 1wwl_A Monocyte differentiatio 99.9 4.2E-27 1.5E-31 252.8 6.2 246 551-850 42-310 (312)
66 2z80_A TOLL-like receptor 2, v 99.9 9.9E-26 3.4E-30 247.2 17.1 282 92-410 30-318 (353)
67 3oja_A Leucine-rich immune mol 99.9 1.2E-25 4.1E-30 256.2 15.9 218 550-826 32-250 (487)
68 2z62_A TOLL-like receptor 4, v 99.9 8.6E-25 3E-29 230.7 21.3 210 577-832 29-243 (276)
69 3g06_A SSPH2 (leucine-rich rep 99.9 2.5E-24 8.6E-29 249.7 26.7 203 551-831 100-302 (622)
70 3oja_A Leucine-rich immune mol 99.9 1.4E-25 4.9E-30 255.6 15.7 212 551-821 57-270 (487)
71 3g06_A SSPH2 (leucine-rich rep 99.9 2.1E-24 7.2E-29 250.4 25.7 188 552-813 121-308 (622)
72 2o6q_A Variable lymphocyte rec 99.9 8.3E-24 2.8E-28 222.1 21.5 206 554-831 18-223 (270)
73 2z62_A TOLL-like receptor 4, v 99.9 9.7E-24 3.3E-28 222.6 20.3 213 552-806 28-241 (276)
74 2p1m_B Transport inhibitor res 99.9 2E-26 6.8E-31 272.5 -1.7 160 622-825 370-543 (594)
75 1p9a_G Platelet glycoprotein I 99.9 2.7E-23 9.1E-28 219.9 20.0 205 573-829 7-211 (290)
76 2p1m_B Transport inhibitor res 99.9 4E-26 1.4E-30 269.9 -2.0 388 345-827 105-520 (594)
77 3rfs_A Internalin B, repeat mo 99.9 5.5E-24 1.9E-28 223.6 13.1 222 553-832 20-241 (272)
78 2o6q_A Variable lymphocyte rec 99.9 1E-22 3.4E-27 213.8 22.0 206 524-805 16-221 (270)
79 2ca6_A RAN GTPase-activating p 99.9 6.7E-25 2.3E-29 243.7 3.3 243 544-830 24-320 (386)
80 3goz_A Leucine-rich repeat-con 99.9 3.5E-24 1.2E-28 235.3 7.1 259 528-830 2-301 (362)
81 3rfs_A Internalin B, repeat mo 99.9 6.9E-23 2.4E-27 215.2 16.7 208 551-814 40-247 (272)
82 1p9a_G Platelet glycoprotein I 99.9 2.2E-22 7.6E-27 212.8 19.5 203 550-804 8-210 (290)
83 4glp_A Monocyte differentiatio 99.9 5.5E-23 1.9E-27 220.6 10.2 205 576-827 91-308 (310)
84 3m19_A Variable lymphocyte rec 99.9 3.3E-22 1.1E-26 207.3 14.7 209 577-857 15-230 (251)
85 4glp_A Monocyte differentiatio 99.9 6.3E-23 2.1E-27 220.2 9.1 231 526-803 66-308 (310)
86 2ast_B S-phase kinase-associat 99.9 7.9E-23 2.7E-27 222.7 9.1 252 526-832 49-312 (336)
87 2xwt_C Thyrotropin receptor; s 99.9 4.2E-22 1.5E-26 205.0 13.5 75 745-823 160-236 (239)
88 3m19_A Variable lymphocyte rec 99.9 2E-21 6.7E-26 201.5 16.7 181 552-804 14-194 (251)
89 1h6u_A Internalin H; cell adhe 99.9 1.4E-21 4.9E-26 208.8 16.0 208 558-828 25-232 (308)
90 2ca6_A RAN GTPase-activating p 99.9 4.7E-23 1.6E-27 228.8 4.5 252 524-820 32-337 (386)
91 2ast_B S-phase kinase-associat 99.9 2.8E-22 9.5E-27 218.4 10.2 254 467-811 48-315 (336)
92 2xwt_C Thyrotropin receptor; s 99.9 2.4E-21 8.2E-26 199.4 16.2 198 552-800 31-237 (239)
93 3goz_A Leucine-rich repeat-con 99.9 7.7E-23 2.6E-27 224.6 4.9 219 553-810 52-305 (362)
94 1h6u_A Internalin H; cell adhe 99.8 5.7E-21 2E-25 204.2 15.8 192 551-803 40-231 (308)
95 4ay9_X Follicle-stimulating ho 99.8 4.3E-20 1.5E-24 201.5 18.5 245 525-826 10-259 (350)
96 3cvr_A Invasion plasmid antige 99.8 2.6E-20 8.7E-25 213.3 16.3 190 552-814 59-255 (571)
97 3cvr_A Invasion plasmid antige 99.8 6.4E-20 2.2E-24 210.0 16.7 183 576-831 59-248 (571)
98 2o6s_A Variable lymphocyte rec 99.8 5.7E-20 1.9E-24 184.6 14.2 79 746-831 105-183 (208)
99 2o6s_A Variable lymphocyte rec 99.8 1.4E-19 4.6E-24 181.8 14.6 181 555-814 10-190 (208)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 1.8E-19 6.3E-24 182.0 14.3 157 627-831 14-171 (220)
101 4ay9_X Follicle-stimulating ho 99.8 4E-19 1.4E-23 193.8 16.6 240 555-846 12-256 (350)
102 2v9t_B SLIT homolog 2 protein 99.8 5.8E-19 2E-23 178.3 14.5 156 627-830 14-169 (220)
103 3e6j_A Variable lymphocyte rec 99.8 1.6E-18 5.4E-23 176.4 14.8 157 626-831 21-177 (229)
104 1h6t_A Internalin B; cell adhe 99.8 1.1E-18 3.9E-23 184.5 13.2 186 557-827 29-214 (291)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 3E-18 1E-22 173.1 15.0 137 626-806 34-170 (220)
106 2xot_A Amphoterin-induced prot 99.8 1.7E-18 5.8E-23 189.6 13.0 114 579-696 21-135 (361)
107 1h6t_A Internalin B; cell adhe 99.8 2.4E-18 8E-23 182.1 13.6 175 622-854 44-218 (291)
108 1m9s_A Internalin B; cell inva 99.7 2.7E-18 9.1E-23 199.1 13.0 187 557-804 26-212 (605)
109 2v9t_B SLIT homolog 2 protein 99.7 1.6E-17 5.6E-22 167.6 14.5 154 579-804 14-167 (220)
110 1dce_A Protein (RAB geranylger 99.7 7.4E-20 2.5E-24 211.0 -3.2 154 612-832 397-552 (567)
111 2xot_A Amphoterin-induced prot 99.7 1.1E-17 3.7E-22 183.3 13.0 131 554-688 20-151 (361)
112 3e6j_A Variable lymphocyte rec 99.7 5.3E-17 1.8E-21 165.1 16.7 155 579-806 22-176 (229)
113 4ezg_A Putative uncharacterize 99.7 1.3E-17 4.5E-22 165.5 11.7 153 623-827 43-195 (197)
114 1w8a_A SLIT protein; signaling 99.7 1.2E-17 4.1E-22 164.7 10.8 87 744-830 57-143 (192)
115 1m9s_A Internalin B; cell inva 99.7 3.5E-17 1.2E-21 189.7 16.2 171 551-780 42-212 (605)
116 1dce_A Protein (RAB geranylger 99.7 7.3E-19 2.5E-23 202.7 -0.2 105 743-852 443-549 (567)
117 4ezg_A Putative uncharacterize 99.7 3.4E-17 1.2E-21 162.5 11.7 154 598-803 42-195 (197)
118 4b8c_D Glucose-repressible alc 99.7 3.8E-18 1.3E-22 203.2 4.8 193 556-803 205-405 (727)
119 1xeu_A Internalin C; cellular 99.7 2.3E-17 7.7E-22 171.6 10.0 79 744-828 109-187 (263)
120 1w8a_A SLIT protein; signaling 99.7 5E-17 1.7E-21 160.3 11.9 155 627-831 11-167 (192)
121 4b8c_D Glucose-repressible alc 99.7 5.5E-18 1.9E-22 201.9 4.5 222 552-830 173-408 (727)
122 1xeu_A Internalin C; cellular 99.7 2E-17 6.9E-22 171.9 8.2 168 553-804 20-187 (263)
123 2wfh_A SLIT homolog 2 protein 99.6 1.9E-15 6.5E-20 148.7 13.4 131 652-830 13-143 (193)
124 2ell_A Acidic leucine-rich nuc 99.6 1E-15 3.5E-20 147.5 10.3 132 649-826 24-160 (168)
125 2je0_A Acidic leucine-rich nuc 99.6 7.5E-16 2.6E-20 145.2 8.5 129 648-822 16-149 (149)
126 2o6r_A Variable lymphocyte rec 99.6 3.2E-15 1.1E-19 145.4 12.7 87 744-830 55-141 (177)
127 2ell_A Acidic leucine-rich nuc 99.6 1.9E-15 6.6E-20 145.6 10.5 138 623-808 23-165 (168)
128 3sb4_A Hypothetical leucine ri 99.6 7.1E-16 2.4E-20 166.6 7.7 100 345-447 226-326 (329)
129 3sb4_A Hypothetical leucine ri 99.6 3.5E-15 1.2E-19 161.1 12.0 240 523-819 48-327 (329)
130 2wfh_A SLIT homolog 2 protein 99.6 1.1E-14 3.8E-19 143.2 12.3 129 627-804 13-141 (193)
131 2o6r_A Variable lymphocyte rec 99.6 1.8E-14 6E-19 140.1 12.8 133 626-806 9-141 (177)
132 2je0_A Acidic leucine-rich nuc 99.6 8.2E-15 2.8E-19 138.0 9.8 129 551-682 16-149 (149)
133 1ds9_A Outer arm dynein; leuci 99.5 2.8E-16 9.5E-21 156.0 -4.9 154 621-826 15-185 (198)
134 4fdw_A Leucine rich hypothetic 99.5 6.7E-13 2.3E-17 146.0 20.1 218 553-824 158-381 (401)
135 1a9n_A U2A', U2A'; complex (nu 99.5 3.7E-14 1.3E-18 137.6 8.4 81 744-826 67-153 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.5 5.5E-14 1.9E-18 136.4 9.0 135 620-804 15-155 (176)
137 3g39_A Variable lymphocyte rec 99.5 1.3E-13 4.3E-18 132.6 10.9 89 743-831 32-120 (170)
138 1ds9_A Outer arm dynein; leuci 99.4 1.4E-15 5E-20 150.8 -5.3 133 619-803 43-186 (198)
139 2r9u_A Variable lymphocyte rec 99.4 4E-13 1.4E-17 129.6 11.2 88 743-830 35-122 (174)
140 4fdw_A Leucine rich hypothetic 99.4 4.8E-12 1.6E-16 139.2 21.0 199 551-802 179-383 (401)
141 4fs7_A Uncharacterized protein 99.4 1.8E-11 6.1E-16 135.6 22.7 68 357-427 59-126 (394)
142 3g39_A Variable lymphocyte rec 99.4 1.5E-12 5.1E-17 125.1 11.4 109 651-806 11-119 (170)
143 4fs7_A Uncharacterized protein 99.4 1.3E-11 4.5E-16 136.6 20.7 62 569-632 313-374 (394)
144 2r9u_A Variable lymphocyte rec 99.3 3.7E-12 1.3E-16 122.7 11.6 106 652-804 15-120 (174)
145 3un9_A NLR family member X1; l 99.3 7.9E-14 2.7E-18 152.0 -0.5 69 743-811 185-261 (372)
146 3un9_A NLR family member X1; l 99.2 8.1E-13 2.8E-17 144.0 -0.9 87 742-828 156-254 (372)
147 2ifg_A High affinity nerve gro 99.2 2.7E-11 9.3E-16 131.7 9.9 132 653-831 12-146 (347)
148 2ifg_A High affinity nerve gro 99.2 4.9E-11 1.7E-15 129.8 9.6 103 628-778 12-116 (347)
149 4gt6_A Cell surface protein; l 99.1 1.4E-08 4.6E-13 112.3 24.1 104 551-661 287-390 (394)
150 4gt6_A Cell surface protein; l 99.1 1.1E-08 3.6E-13 113.1 23.3 109 362-474 56-168 (394)
151 4h09_A Hypothetical leucine ri 98.9 2.7E-07 9.3E-12 101.3 24.1 73 551-625 285-357 (379)
152 2ra8_A Uncharacterized protein 98.8 1.7E-09 5.8E-14 116.5 4.3 64 741-804 252-322 (362)
153 4h09_A Hypothetical leucine ri 98.7 1.1E-06 3.6E-11 96.5 24.4 95 551-649 262-356 (379)
154 2ra8_A Uncharacterized protein 98.7 8.5E-09 2.9E-13 111.0 6.5 65 763-827 250-321 (362)
155 3rw6_A Nuclear RNA export fact 98.3 1.3E-07 4.5E-12 96.1 2.6 84 746-831 148-238 (267)
156 1io0_A Tropomodulin; LRR prote 98.3 9.5E-08 3.3E-12 92.6 1.5 66 761-826 89-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 3.4E-07 1.2E-11 93.1 5.4 80 738-819 167-257 (267)
158 1io0_A Tropomodulin; LRR prote 98.3 2.6E-07 9E-12 89.5 2.4 112 551-662 35-164 (185)
159 3e4g_A ATP synthase subunit S, 97.7 2.2E-05 7.5E-10 73.6 3.5 84 601-684 62-150 (176)
160 3e4g_A ATP synthase subunit S, 97.5 4E-05 1.4E-09 71.9 2.9 84 243-327 62-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00018 6.2E-09 68.8 2.7 87 524-610 41-136 (197)
162 3rfe_A Platelet glycoprotein I 97.1 0.00077 2.6E-08 60.2 6.6 56 745-802 12-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00067 2.3E-08 64.8 3.4 90 597-686 67-170 (197)
164 3rfe_A Platelet glycoprotein I 96.6 0.0028 9.6E-08 56.5 6.5 60 768-829 11-71 (130)
165 2ks1_B Epidermal growth factor 48.5 9.6 0.00033 25.8 2.0 13 897-909 27-39 (44)
166 2lz0_A Uncharacterized protein 43.9 40 0.0014 27.7 5.6 47 563-610 7-53 (100)
167 2lz0_A Uncharacterized protein 34.9 91 0.0031 25.4 6.5 46 205-251 7-52 (100)
168 2k1k_A Ephrin type-A receptor 30.6 16 0.00055 23.8 0.9 17 884-900 13-29 (38)
169 2l2t_A Receptor tyrosine-prote 30.3 23 0.00077 24.0 1.5 11 899-909 28-38 (44)
170 2l9u_A Receptor tyrosine-prote 29.1 20 0.00069 22.2 1.0 24 885-908 10-33 (40)
171 2jwa_A Receptor tyrosine-prote 21.0 25 0.00086 23.7 0.4 24 885-908 15-38 (44)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.7e-90 Score=835.70 Aligned_cols=714 Identities=30% Similarity=0.431 Sum_probs=576.6
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCcCccceEecCCCCcEEEEEcCCCCCCCchhhhccccccee--
Q 002360 7 CNGTSCIESEREALLKLKHDLRDPSHRLASWIGDNGDCCKWGGVLCGNFTGHVLELNLQNPFSPDDNEAYQRSMLVGK-- 84 (931)
Q Consensus 7 ~~~~~~~~~~~~~ll~~k~~~~d~~~~l~~w~~~~~~~c~w~g~~c~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~-- 84 (931)
|.++.+.++|++||++||+++.||. .+++|. .+++||.|+||+|+ .+||++|+|++. .+.|.
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~~~-~l~~W~-~~~~~C~w~gv~C~--~~~v~~L~L~~~------------~l~g~~~ 67 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPDKN-LLPDWS-SNKNPCTFDGVTCR--DDKVTSIDLSSK------------PLNVGFS 67 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSCTT-SSTTCC-TTSCGGGSTTEEEE--TTEEEEEECTTS------------CCCEEHH
T ss_pred CccccCCHHHHHHHHHHHhhCCCcc-cccCCC-CCCCCcCCcceEEC--CCcEEEEECCCC------------CcCCccC
Confidence 5667788899999999999999998 899998 67899999999998 689999999996 78888
Q ss_pred -ecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCc--ccCCCCCCCEEEccCCcccccccCc
Q 002360 85 -INPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPH--QLGNLSNLQYLDLSGVYFELHAETI 161 (931)
Q Consensus 85 -l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~--~~~~L~~L~~L~Ls~n~~~~~~~~~ 161 (931)
+++++.++++|+.++++.+.+. .+|+.++.+++|++|+|++|.+.+.+|. .++++++|++|+|++|.+......
T Consensus 68 ~l~~~l~~L~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~- 144 (768)
T 3rgz_A 68 AVSSSLLSLTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV- 144 (768)
T ss_dssp HHHHHTTTCTTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSC-
T ss_pred ccChhHhccCcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCH-
Confidence 8999999999999999999876 4578899999999999999999998998 999999999999999987533221
Q ss_pred cccCCCCCCCeEEccCcccCCCCchH-HHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccC
Q 002360 162 SWLSGLSLLEHLYISFVNLSKASDSL-LVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGN 240 (931)
Q Consensus 162 ~~l~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 240 (931)
..+.++++|++|++++|.++...... ..+.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+.+|. ++.
T Consensus 145 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~ 221 (768)
T 3rgz_A 145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGD 221 (768)
T ss_dssp CSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTT
T ss_pred HHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-ccc
Confidence 12478999999999999998764332 236789999999999999887665 37899999999999999987777 999
Q ss_pred CCCCCEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCC-CCCc
Q 002360 241 LTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKL-CKLT 319 (931)
Q Consensus 241 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l-~~L~ 319 (931)
+++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|.. .+++|++|++++| .+.+.+|..+... ++|+
T Consensus 222 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n-~l~~~ip~~~~~~~~~L~ 297 (768)
T 3rgz_A 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAEN-KFTGEIPDFLSGACDTLT 297 (768)
T ss_dssp CCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSS-EEEESCCCCSCTTCTTCS
T ss_pred CCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCC-ccCCccCHHHHhhcCcCC
Confidence 999999999999999899999999999999999999998877753 7889999999999 8888888887764 8888
Q ss_pred EEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccc-cCCCCCCCEEeccCCcCCcCccccccCCC-CCCE
Q 002360 320 SFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQ-LGQFKRLNFLGLSNNQMDGSIPLSLGQMA-NLES 397 (931)
Q Consensus 320 ~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~ 397 (931)
+|++++|.+.+.+|..++.+ ++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+.+|..+..++ +|++
T Consensus 298 ~L~Ls~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~ 372 (768)
T 3rgz_A 298 GLDLSGNHFYGAVPPFFGSC-----SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372 (768)
T ss_dssp EEECCSSEEEECCCGGGGGC-----TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred EEECcCCcCCCccchHHhcC-----CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcE
Confidence 88888888877777777766 77888888888777666654 77777788888877777777777777766 7777
Q ss_pred EEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCC
Q 002360 398 LDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTR 477 (931)
Q Consensus 398 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~ 477 (931)
|++++|++++.++.. +.. ..+++|++|++++|.+.+.+|..+..+++|+.|++++|+
T Consensus 373 L~Ls~N~l~~~~~~~-~~~----------------------~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 429 (768)
T 3rgz_A 373 LDLSSNNFSGPILPN-LCQ----------------------NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429 (768)
T ss_dssp EECCSSEEEEECCTT-TTC----------------------STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE
T ss_pred EEccCCCcCCCcChh-hhh----------------------cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc
Confidence 777777776655542 221 113455556666666655666667777777777777777
Q ss_pred CCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEE
Q 002360 478 ISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFL 557 (931)
Q Consensus 478 i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L 557 (931)
+++.+|..+.. +++|++|++++|.+.+.+|. . +..+++|++|
T Consensus 430 l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~---------------------------------~----~~~l~~L~~L 471 (768)
T 3rgz_A 430 LSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQ---------------------------------E----LMYVKTLETL 471 (768)
T ss_dssp EESCCCGGGGG-CTTCCEEECCSSCCCSCCCG---------------------------------G----GGGCTTCCEE
T ss_pred ccCcccHHHhc-CCCCCEEECCCCcccCcCCH---------------------------------H----HcCCCCceEE
Confidence 76666655432 45555555555555443332 1 1225678888
Q ss_pred ECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCccc
Q 002360 558 KLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELV 637 (931)
Q Consensus 558 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 637 (931)
++++|++++.+|..+.++++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..+..+++|++|++++|+++
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 88888888778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccCchhHHhhcCcCcEEEccCc----------------------cccccCCcccCCCCCcCEEEccCCccccccCccccc
Q 002360 638 GSIPTWIGERFSRLMILILRSN----------------------KFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINN 695 (931)
Q Consensus 638 ~~~p~~~~~~l~~L~~L~L~~n----------------------~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 695 (931)
|.+|.+++ ....+..+++..+ .+.+..+..+..++.++.++++.|.+.|.+|..+++
T Consensus 552 g~ip~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~ 630 (768)
T 3rgz_A 552 GTIPAAMF-KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630 (768)
T ss_dssp SBCCGGGG-TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred CcCChHHh-cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence 88888776 3444443333221 233445555666677777788888888888877776
Q ss_pred cccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCC
Q 002360 696 FSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHN 775 (931)
Q Consensus 696 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N 775 (931)
++.| +.|||++|+++|.+|..++.++.|++|+|++|
T Consensus 631 l~~L--------------------------------------------~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N 666 (768)
T 3rgz_A 631 NGSM--------------------------------------------MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666 (768)
T ss_dssp SBCC--------------------------------------------CEEECCSSCCBSCCCGGGGGCTTCCEEECCSS
T ss_pred cccc--------------------------------------------cEEECcCCcccccCCHHHhccccCCEEeCcCC
Confidence 6655 89999999999999999999999999999999
Q ss_pred cCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCCCCccCcccccccCCC-CCCCCCCC
Q 002360 776 LFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGN-DLCGAPLS 854 (931)
Q Consensus 776 ~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~~~ 854 (931)
+++|.||..++++++|++||||+|+++|.+|..+..+++|++||+++|+++|.||..+|+.++...+|.|| +|||.|+.
T Consensus 667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~ 746 (768)
T 3rgz_A 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP 746 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC
T ss_pred ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 89999988
Q ss_pred CCC
Q 002360 855 SCT 857 (931)
Q Consensus 855 ~c~ 857 (931)
.|.
T Consensus 747 ~C~ 749 (768)
T 3rgz_A 747 RCD 749 (768)
T ss_dssp CCC
T ss_pred CCC
Confidence 896
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.2e-70 Score=660.14 Aligned_cols=622 Identities=28% Similarity=0.355 Sum_probs=505.9
Q ss_pred eecccccCccCCcEeeCCCCCCCCCCchh--hhhcCCCCceeecccccccccCCccc-CCCCCCCEEEccCCccccccc-
Q 002360 84 KINPSLLELKHLVHLDLSGNDFQGIQIPK--YLASLVNLRYLNLSQARFTGMIPHQL-GNLSNLQYLDLSGVYFELHAE- 159 (931)
Q Consensus 84 ~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~--~l~~l~~L~~L~Ls~n~~~~~~p~~~-~~L~~L~~L~Ls~n~~~~~~~- 159 (931)
.+|..+.++++|++|+|++|.+++. +|. .++++++|++|+|++|.+.+..|..+ .++++|++|++++|.+.....
T Consensus 91 ~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 169 (768)
T 3rgz_A 91 GSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169 (768)
T ss_dssp ECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHH
T ss_pred CCchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCCh
Confidence 3558899999999999999999875 777 89999999999999999998888776 899999999999999865432
Q ss_pred CccccCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCccccc
Q 002360 160 TISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLG 239 (931)
Q Consensus 160 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 239 (931)
....+.++++|++|++++|.++.... +..+++|++|++++|.+.+..+. +.++++|++|++++|.+++.+|..++
T Consensus 170 ~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~ 244 (768)
T 3rgz_A 170 GWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS 244 (768)
T ss_dssp HHHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTT
T ss_pred hhhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHh
Confidence 22236899999999999999987644 36899999999999999998776 99999999999999999999999999
Q ss_pred CCCCCCEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCc
Q 002360 240 NLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLT 319 (931)
Q Consensus 240 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 319 (931)
.+++|++|++++|.+.+..|.. .+++|++|++++|.+++.+|......+++|++|++++| .+.+.+|..++++++|+
T Consensus 245 ~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~ 321 (768)
T 3rgz_A 245 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPPFFGSCSLLE 321 (768)
T ss_dssp TCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS-EEEECCCGGGGGCTTCC
T ss_pred cCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC-cCCCccchHHhcCCCcc
Confidence 9999999999999998877765 89999999999999999999884444599999999999 99999999999999999
Q ss_pred EEEcCCCcCCCcchhh-hhhcccccccCccEEEcCCcccccccccccCCCC-CCCEEeccCCcCCcCccccccC--CCCC
Q 002360 320 SFSMASTKLSQDISEI-LGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFK-RLNFLGLSNNQMDGSIPLSLGQ--MANL 395 (931)
Q Consensus 320 ~L~l~~~~l~~~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~--l~~L 395 (931)
+|++++|.+.+.+|.. +..+ ++|++|++++|.+.+.+|..+..++ +|++|++++|.+.+.+|..+.. +++|
T Consensus 322 ~L~L~~n~l~~~ip~~~l~~l-----~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 322 SLALSSNNFSGELPMDTLLKM-----RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp EEECCSSEEEEECCHHHHTTC-----TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred EEECCCCcccCcCCHHHHhcC-----CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 9999999999888765 7777 8999999999999999999998887 9999999999999888888776 8899
Q ss_pred CEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCC
Q 002360 396 ESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISS 475 (931)
Q Consensus 396 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~ 475 (931)
++|++++|++++.+|. .+.++++|+.|++++|.+....+..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++
T Consensus 397 ~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp CEEECCSSEEEEECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred cEEECCCCccccccCH-HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 9999999999887776 677777777777666666554444444444444444444444444444444444444444444
Q ss_pred CCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCcc
Q 002360 476 TRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIE 555 (931)
Q Consensus 476 n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~ 555 (931)
|++++.+|..+. .+++|+
T Consensus 476 N~l~~~~p~~l~--------------------------------------------------------------~l~~L~ 493 (768)
T 3rgz_A 476 NDLTGEIPSGLS--------------------------------------------------------------NCTNLN 493 (768)
T ss_dssp SCCCSCCCGGGG--------------------------------------------------------------GCTTCC
T ss_pred CcccCcCCHHHh--------------------------------------------------------------cCCCCC
Confidence 444444333321 245666
Q ss_pred EEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCC-
Q 002360 556 FLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGEN- 634 (931)
Q Consensus 556 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N- 634 (931)
+|++++|++++.+|.++..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..+.....+..+++..+
T Consensus 494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~ 573 (768)
T 3rgz_A 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence 6666666666666666666667777777777776666666666677777777777776666666665554444433321
Q ss_pred ---------------------cccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccc
Q 002360 635 ---------------------ELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCI 693 (931)
Q Consensus 635 ---------------------~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 693 (931)
.+.+..+..+. .++.++.++++.|.+.|.+|..+..+++|+.|||++|+++|.+|..+
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l 652 (768)
T 3rgz_A 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652 (768)
T ss_dssp EEEEEECCSCCTTCCSSEEEEECTTCCGGGGG-GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred cccccccccccccccccccccccccccchhhh-ccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH
Confidence 23445555555 67888889999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEcc
Q 002360 694 NNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLS 773 (931)
Q Consensus 694 ~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls 773 (931)
++++.| +.|||++|+++|.+|..++++++|++||||
T Consensus 653 ~~l~~L--------------------------------------------~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 653 GSMPYL--------------------------------------------FILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp GGCTTC--------------------------------------------CEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred hccccC--------------------------------------------CEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence 888776 889999999999999999999999999999
Q ss_pred CCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCcc-cccc
Q 002360 774 HNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNN-LNGE 828 (931)
Q Consensus 774 ~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~-l~g~ 828 (931)
+|+++|.||..++.+++|++||+|+|+++|.||.. ..+..+....+.+|+ |+|.
T Consensus 689 ~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp SSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred CCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence 99999999999999999999999999999999975 445566667788886 6664
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.9e-59 Score=559.91 Aligned_cols=601 Identities=18% Similarity=0.155 Sum_probs=424.0
Q ss_pred eecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccc
Q 002360 84 KINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISW 163 (931)
Q Consensus 84 ~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~ 163 (931)
.+|..+. +++++|+|++|.+++. .+..|+++++|++|+|++|.+++..|.+|+++++|++|++++|.+..++..
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--- 91 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK--- 91 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT---
T ss_pred ccccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh---
Confidence 3555443 5777777777777765 455677777777777777777766677777777777777776665544432
Q ss_pred cCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCC
Q 002360 164 LSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTS 243 (931)
Q Consensus 164 l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 243 (931)
.+..+++|++|++++|.+.++++..+.++++|++|++++|.+.+..|..++.+++
T Consensus 92 -------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 146 (680)
T 1ziw_A 92 -------------------------TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146 (680)
T ss_dssp -------------------------TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTT
T ss_pred -------------------------hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhccccc
Confidence 2456777888888888888887777888888888888888888777777788888
Q ss_pred CCEEEcCCCccccccccccc--CCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccC---CCCCC
Q 002360 244 LKHLDLYSNQFNSAVLGWLS--KLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFG---KLCKL 318 (931)
Q Consensus 244 L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~---~l~~L 318 (931)
|++|++++|.+++..+..+. .+++|+.|++++|.+.+..+.. +..+++|+.|++.++ .+.+.....+. ..++|
T Consensus 147 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~~-~l~~~~~~~~~~~l~~~~L 224 (680)
T 1ziw_A 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNV-QLGPSLTEKLCLELANTSI 224 (680)
T ss_dssp CCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG-GGGSSEECEEECTTC-CCHHHHHHHHHHHHTTSCC
T ss_pred CCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh-hhhhhhhhhhhcccc-ccChhhHHHHHHHhhhccc
Confidence 88888888888776666554 4577888888888776544444 677777777777776 44332211111 23566
Q ss_pred cEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEE
Q 002360 319 TSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESL 398 (931)
Q Consensus 319 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 398 (931)
+.|++++|.+.+..+..+..+.. ++|++|++++|.+.+..+..++.+++|++|++++|.+.+..|..+.++++|++|
T Consensus 225 ~~L~L~~n~l~~~~~~~~~~l~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (680)
T 1ziw_A 225 RNLSLSNSQLSTTSNTTFLGLKW---TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301 (680)
T ss_dssp CEEECTTSCCCEECTTTTGGGGG---SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEE
T ss_pred cEEEccCCcccccChhHhhccCc---CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEE
Confidence 77777777666666655554411 336777777776666666666666677777777776666666666666667777
Q ss_pred EccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCC
Q 002360 399 DLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRI 478 (931)
Q Consensus 399 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i 478 (931)
++++|...+.++. ..++ ......+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 302 ~L~~~~~~~~~~~---~~lp-------------~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 302 NLKRSFTKQSISL---ASLP-------------KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp ECTTCBCCC---------CC-------------EECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBS
T ss_pred eccchhhhccccc---cccc-------------ccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCch
Confidence 6666554432221 0111 11111233344444555555544444444444444444444444443
Q ss_pred CCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEE
Q 002360 479 SDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLK 558 (931)
Q Consensus 479 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~ 558 (931)
. +..... ..+ .. ...++|+.|+
T Consensus 366 ~-------------------------~~~l~~-----------------------~~f---------~~-~~~~~L~~L~ 387 (680)
T 1ziw_A 366 S-------------------------LRTLTN-----------------------ETF---------VS-LAHSPLHILN 387 (680)
T ss_dssp C-------------------------CCEECT-----------------------TTT---------GG-GTTSCCCEEE
T ss_pred h-------------------------hhhcch-----------------------hhh---------cc-cccCcCceEE
Confidence 2 110000 000 00 0125789999
Q ss_pred CcCCccccccCCcccCCCCCCEEecCCCcceecCC-CcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCccc
Q 002360 559 LSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLP-MSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELV 637 (931)
Q Consensus 559 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 637 (931)
+++|++++..|..|..+++|+.|++++|.+++.+| ..|.++++|++|++++|++.+..+..|..+++|+.|++++|.+.
T Consensus 388 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 467 (680)
T 1ziw_A 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCB
T ss_pred CCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccc
Confidence 99999999889999999999999999999987766 67889999999999999999888999999999999999999986
Q ss_pred --ccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccc
Q 002360 638 --GSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAF 715 (931)
Q Consensus 638 --~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~ 715 (931)
+.+|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..-+
T Consensus 468 ~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~------------------ 528 (680)
T 1ziw_A 468 NVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP------------------ 528 (680)
T ss_dssp CTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC------------------
T ss_pred ccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCc------------------
Confidence 56777776 799999999999999988888899999999999999999865332211000
Q ss_pred cCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEe
Q 002360 716 SGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLD 795 (931)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~Ld 795 (931)
......++.|+.|+|++|+++...+..|.++++|++|+|++|++++..+..|..+++|+.|+
T Consensus 529 ------------------~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 590 (680)
T 1ziw_A 529 ------------------IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590 (680)
T ss_dssp ------------------CCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ------------------chhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEE
Confidence 00012245569999999999955455799999999999999999977777789999999999
Q ss_pred ccCCcCcccCccccc-CCCCCCeeeCCCccccccCCC
Q 002360 796 FSANQLSGQIPQSMS-NLSFLNYLNLSNNNLNGEIPS 831 (931)
Q Consensus 796 Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g~ip~ 831 (931)
+++|++++..|..+. .+++|+.+++++|++.|.++.
T Consensus 591 L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 591 LQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999999999888887 789999999999999998874
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-57 Score=547.03 Aligned_cols=574 Identities=23% Similarity=0.266 Sum_probs=427.1
Q ss_pred CCcEEEEEcCCCCCCCchhhhcccccceeecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCC
Q 002360 56 TGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIP 135 (931)
Q Consensus 56 ~~~v~~L~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p 135 (931)
..++++|+++++ .+.+..+..+.++++|++|+|++|.+++. .|..|+++++|++|+|++|.+++..+
T Consensus 24 ~~~l~~L~Ls~n------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~ 90 (680)
T 1ziw_A 24 PTNITVLNLTHN------------QLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSD 90 (680)
T ss_dssp CTTCSEEECCSS------------CCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCT
T ss_pred CCCCcEEECCCC------------CCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccCh
Confidence 458999999996 56665566799999999999999999986 68999999999999999999996555
Q ss_pred cccCCCCCCCEEEccCCcccccccCccccCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccC
Q 002360 136 HQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSA 215 (931)
Q Consensus 136 ~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 215 (931)
.+|+++++|++|++++|.+..++.. .+..+++|++|++++|.+.+.++..+.
T Consensus 91 ~~~~~l~~L~~L~L~~n~l~~~~~~----------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 142 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNSIQKIKNN----------------------------PFVKQKNLITLDLSHNGLSSTKLGTQV 142 (680)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCSC----------------------------TTTTCTTCCEEECCSSCCSCCCCCSSS
T ss_pred hhhccCCCCCEEECCCCccCccChh----------------------------HccccCCCCEEECCCCcccccCchhhc
Confidence 6899999999999999987655432 255788899999999999999998999
Q ss_pred CCCCCCEEEccCCcCCCCCccccc--CCCCCCEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccc--cCCCC
Q 002360 216 NFSSLTTLDLSGNQFQGQIPSRLG--NLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLG--LDNLT 291 (931)
Q Consensus 216 ~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~--l~~l~ 291 (931)
++++|++|++++|.+++..+..+. .+++|++|++++|.+++..+..+..+++|+.|++.++.+.+...... ....+
T Consensus 143 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~ 222 (680)
T 1ziw_A 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT 222 (680)
T ss_dssp CCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTS
T ss_pred ccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhc
Confidence 999999999999999987776654 56899999999999999999999999999999999998764322110 11347
Q ss_pred CccEEEccCCCCCcccCCcccCCCCC--CcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCC
Q 002360 292 SIQKLLLSWNDELGGKIPTSFGKLCK--LTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFK 369 (931)
Q Consensus 292 ~L~~L~L~~n~~~~~~~~~~~~~l~~--L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 369 (931)
+|++|++++| .+.+..|.++.+++. |+.|++++|.+.+..+..++.+ ++|++|++++|.+.+..+..+..++
T Consensus 223 ~L~~L~L~~n-~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~ 296 (680)
T 1ziw_A 223 SIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL-----PQLEYFFLEYNNIQHLFSHSLHGLF 296 (680)
T ss_dssp CCCEEECTTS-CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTC-----TTCCEEECCSCCBSEECTTTTTTCT
T ss_pred cccEEEccCC-cccccChhHhhccCcCCCCEEECCCCCcCccCcccccCc-----ccccEeeCCCCccCccChhhhcCCC
Confidence 8999999999 899999999988865 9999999999998888888777 8999999999999999999999999
Q ss_pred CCCEEeccCCcCCc-----Cccc----cccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCC
Q 002360 370 RLNFLGLSNNQMDG-----SIPL----SLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVP 440 (931)
Q Consensus 370 ~L~~L~L~~n~l~~-----~~p~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 440 (931)
+|++|++++|...+ .+|. .+..+++|++|++++|++.+..+. .|.++++|+++++++|.+....
T Consensus 297 ~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~------ 369 (680)
T 1ziw_A 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN-MFTGLINLKYLSLSNSFTSLRT------ 369 (680)
T ss_dssp TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT-TTTTCTTCCEEECTTCBSCCCE------
T ss_pred CccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh-HhccccCCcEEECCCCchhhhh------
Confidence 99999999876553 2232 677888899999999988864443 5666777666666665422100
Q ss_pred CccccEEEccCCCCCCCcChhhhc--cCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcc
Q 002360 441 PFQLTVLELRSCHLGPRFPLWLQL--QKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLI 518 (931)
Q Consensus 441 ~~~L~~L~L~~~~l~~~~~~~~~~--~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~ 518 (931)
..+..+.. .++|+.|++++|++++..|..+.
T Consensus 370 ----------------l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~------------------------------- 402 (680)
T 1ziw_A 370 ----------------LTNETFVSLAHSPLHILNLTKNKISKIESDAFS------------------------------- 402 (680)
T ss_dssp ----------------ECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT-------------------------------
T ss_pred ----------------cchhhhcccccCcCceEECCCCCCCeEChhhhh-------------------------------
Confidence 01111111 13555555555555543332221
Q ss_pred cCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccC-CcccCCCCCCEEecCCCcceecCCCccc
Q 002360 519 ITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIP-DCWMNWPRLRTLNLGNNNFTGSLPMSIG 597 (931)
Q Consensus 519 ~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 597 (931)
.+++|+.|++++|++++.+| ..|..+++|++|++++|++.+..+..|.
T Consensus 403 -------------------------------~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 451 (680)
T 1ziw_A 403 -------------------------------WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 451 (680)
T ss_dssp -------------------------------TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT
T ss_pred -------------------------------CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh
Confidence 13445555555555544333 3455555555555555555555555555
Q ss_pred CCCCCCEEEccCCcCc--cccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccC--------Cc
Q 002360 598 TLTSLRSLNLRNNRLS--GVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDF--------PI 667 (931)
Q Consensus 598 ~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~--------p~ 667 (931)
.+++|++|++++|.+. +..|..|.++++|++|++++|++++ +|...+..+++|++|++++|++++.. +.
T Consensus 452 ~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 530 (680)
T 1ziw_A 452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY 530 (680)
T ss_dssp TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCC
T ss_pred cCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc-CChhhhccccccCEEeCCCCCccccchhhccCCcch
Confidence 5555555555555554 3445555555556666666665553 33332234555666666666555431 22
Q ss_pred ccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEE
Q 002360 668 QLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSID 747 (931)
Q Consensus 668 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Ld 747 (931)
.+..+++|+.|+|++|+++...+..|.++++| +.||
T Consensus 531 ~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L--------------------------------------------~~L~ 566 (680)
T 1ziw_A 531 FLKGLSHLHILNLESNGFDEIPVEVFKDLFEL--------------------------------------------KIID 566 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------------------------------------CEEE
T ss_pred hhcCCCCCCEEECCCCCCCCCCHHHcccccCc--------------------------------------------ceeE
Confidence 47788999999999999984444456666655 8899
Q ss_pred cccCcccccCCccccCCCCCCEEEccCCcCcccCCcCcc-CcCCCCEEeccCCcCcccCc
Q 002360 748 ISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIG-VMRSIESLDFSANQLSGQIP 806 (931)
Q Consensus 748 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~-~l~~L~~LdLs~N~l~~~~p 806 (931)
|++|++++..+..|..+++|++|+|++|++++..|..++ .+++|+.|++++|++.+.-+
T Consensus 567 Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 999999977777789999999999999999988888787 78999999999999997654
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.7e-54 Score=512.24 Aligned_cols=530 Identities=20% Similarity=0.208 Sum_probs=367.8
Q ss_pred eecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccc
Q 002360 84 KINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISW 163 (931)
Q Consensus 84 ~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~ 163 (931)
.+|..+. +++++|+|++|.+++. .|..|+++++|++|+|++|.+.+..|.+|+++++|++|++++|.+...+..
T Consensus 26 ~iP~~l~--~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--- 99 (606)
T 3t6q_A 26 EIPGTLP--NSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET--- 99 (606)
T ss_dssp SCCTTSC--TTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT---
T ss_pred cCcCCCC--CcCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh---
Confidence 4555553 3678888888888865 467788888888888888888877788888888888888887766543221
Q ss_pred cCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCC
Q 002360 164 LSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTS 243 (931)
Q Consensus 164 l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 243 (931)
.+..+++|++|++++|.++++.+..+.++++|++|++++|++.+..+..+..+++
T Consensus 100 -------------------------~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 154 (606)
T 3t6q_A 100 -------------------------ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154 (606)
T ss_dssp -------------------------TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTT
T ss_pred -------------------------hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcc
Confidence 2567888999999999999988888999999999999999998755455666999
Q ss_pred CCEEEcCCCcccccccccccCCCCCC--EEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEE
Q 002360 244 LKHLDLYSNQFNSAVLGWLSKLNDLE--VLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSF 321 (931)
Q Consensus 244 L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 321 (931)
|++|++++|.+++..+..++.+++|+ .|++++|.+.+..+.. + ....|++|++++|. ..+..+..+..++..
T Consensus 155 L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~-~-~~~~L~~L~l~~~~----~~~~~~~~l~~~~l~ 228 (606)
T 3t6q_A 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA-F-DSAVFQSLNFGGTQ----NLLVIFKGLKNSTIQ 228 (606)
T ss_dssp CCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTT-T-TTCEEEEEECTTCS----CHHHHHHHTTTCEEE
T ss_pred cCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhH-h-hhccccccccCCch----hHHHHhhhccccchh
Confidence 99999999999888888899999999 8999999988655543 3 44678888888873 233334444444333
Q ss_pred EcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCC--CCCEEeccCCcCCcCccccccCCCCCCEEE
Q 002360 322 SMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFK--RLNFLGLSNNQMDGSIPLSLGQMANLESLD 399 (931)
Q Consensus 322 ~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 399 (931)
.+....+.. +....+. +..+..+. +|++|++++|.+.+..+..|+.+++|++|+
T Consensus 229 ~l~~~~~~~----------------~~~~~i~--------~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 284 (606)
T 3t6q_A 229 SLWLGTFED----------------MDDEDIS--------PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284 (606)
T ss_dssp EEECCCCTT----------------SCCCCCC--------GGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEE
T ss_pred heechhhcc----------------ccccccC--------hhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEe
Confidence 332221111 0000000 01111111 344444444444443333344444444444
Q ss_pred ccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCC
Q 002360 400 LSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRIS 479 (931)
Q Consensus 400 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~ 479 (931)
+++|+++ . +|..+..+++|++|++++|+++
T Consensus 285 l~~n~l~-~-------------------------------------------------lp~~l~~l~~L~~L~l~~n~l~ 314 (606)
T 3t6q_A 285 LTATHLS-E-------------------------------------------------LPSGLVGLSTLKKLVLSANKFE 314 (606)
T ss_dssp CTTSCCS-C-------------------------------------------------CCSSCCSCTTCCEEECTTCCCS
T ss_pred ccCCccC-C-------------------------------------------------CChhhcccccCCEEECccCCcC
Confidence 4444433 1 1222222334444444444443
Q ss_pred CCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEEC
Q 002360 480 DKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKL 559 (931)
Q Consensus 480 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L 559 (931)
+..|..+. .+++|+.|++
T Consensus 315 ~~~~~~~~--------------------------------------------------------------~l~~L~~L~l 332 (606)
T 3t6q_A 315 NLCQISAS--------------------------------------------------------------NFPSLTHLSI 332 (606)
T ss_dssp BGGGGCGG--------------------------------------------------------------GCTTCSEEEC
T ss_pred cCchhhhh--------------------------------------------------------------ccCcCCEEEC
Confidence 32221111 1344555555
Q ss_pred cCCccccccC-CcccCCCCCCEEecCCCcceecC--CCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcc
Q 002360 560 STNHFSEGIP-DCWMNWPRLRTLNLGNNNFTGSL--PMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENEL 636 (931)
Q Consensus 560 s~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 636 (931)
++|.+.+.++ ..+..+++|++|++++|.+++.. +..+..+++|++|++++|++.+..|..|..+++|+.|++++|++
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 5555543333 23666677777777777776554 56677777777777777777777777777777888888888877
Q ss_pred cccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCcccccc---CccccccccccccCCCCCCccccc
Q 002360 637 VGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTI---PRCINNFSAMATADSSDQSSDILY 713 (931)
Q Consensus 637 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~~~~~~~~~~~~~ 713 (931)
.+..|...+..+++|++|++++|.+.+..|..+..+++|+.|++++|++.+.. +..+..+++
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~--------------- 477 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR--------------- 477 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTT---------------
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCC---------------
Confidence 76655553446888888888888888888888888999999999999987632 234444444
Q ss_pred cccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCE
Q 002360 714 AFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIES 793 (931)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~ 793 (931)
|+.|+|++|++++.+|..|+.+++|++|+|++|++++.+|..++.+++| .
T Consensus 478 -----------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~ 527 (606)
T 3t6q_A 478 -----------------------------LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-Y 527 (606)
T ss_dssp -----------------------------CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-E
T ss_pred -----------------------------ccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-E
Confidence 4889999999999989999999999999999999999999999999999 9
Q ss_pred EeccCCcCcccCcccccCCCCCCeeeCCCccccccCCC
Q 002360 794 LDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS 831 (931)
Q Consensus 794 LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 831 (931)
||+++|++++.+|..+..+++|+++++++|+++|.++.
T Consensus 528 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 528 LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp EECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred EECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 99999999999999999999999999999999998763
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.7e-53 Score=498.93 Aligned_cols=525 Identities=19% Similarity=0.197 Sum_probs=385.9
Q ss_pred CCcEEEEEcCCCCCCCchhhhcccccceeecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCC
Q 002360 56 TGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIP 135 (931)
Q Consensus 56 ~~~v~~L~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p 135 (931)
...+++|+++++ .+.+..+.++.++++|++|+|++|.+... .|..|+++++|++|+|++|.+.+..|
T Consensus 32 ~~~l~~L~Ls~n------------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~ 98 (606)
T 3t6q_A 32 PNSTECLEFSFN------------VLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAE 98 (606)
T ss_dssp CTTCCEEECTTC------------CCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECT
T ss_pred CCcCcEEEccCC------------ccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccCh
Confidence 358999999996 66666688999999999999999999876 68899999999999999999998889
Q ss_pred cccCCCCCCCEEEccCCcccccccCccccCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccC
Q 002360 136 HQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSA 215 (931)
Q Consensus 136 ~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 215 (931)
.+|+++++|++|++++|.+..++.. .+..+++|++|++++|.+.+++...+.
T Consensus 99 ~~~~~l~~L~~L~L~~n~i~~l~~~----------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~ 150 (606)
T 3t6q_A 99 TALSGPKALKHLFFIQTGISSIDFI----------------------------PLHNQKTLESLYLGSNHISSIKLPKGF 150 (606)
T ss_dssp TTTSSCTTCCEEECTTSCCSCGGGS----------------------------CCTTCTTCCEEECCSSCCCCCCCCTTC
T ss_pred hhhcccccccEeeccccCcccCCcc----------------------------hhccCCcccEEECCCCcccccCccccc
Confidence 9999999999999999987665322 145788899999999999998766676
Q ss_pred CCCCCCEEEccCCcCCCCCcccccCCCCCC--EEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCc
Q 002360 216 NFSSLTTLDLSGNQFQGQIPSRLGNLTSLK--HLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSI 293 (931)
Q Consensus 216 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 293 (931)
.+++|++|++++|.+.+..+..++.+++|+ +|++++|.+.+..+..+.. .+|+.|++++|... +.. +..+.++
T Consensus 151 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~---~~~-~~~l~~~ 225 (606)
T 3t6q_A 151 PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNL---LVI-FKGLKNS 225 (606)
T ss_dssp CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCH---HHH-HHHTTTC
T ss_pred CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchhH---HHH-hhhcccc
Confidence 799999999999999988888899999999 9999999999888777655 68999999998632 222 4445444
Q ss_pred cEEEccCCCCCcccCCcccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCE
Q 002360 294 QKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNF 373 (931)
Q Consensus 294 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 373 (931)
+...+... .+ ..+... .+.. ..+..+.. .+|++|++++|.+.+..+..|..+++|++
T Consensus 226 ~l~~l~~~-~~-----------~~~~~~-----~i~~---~~~~~l~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 282 (606)
T 3t6q_A 226 TIQSLWLG-TF-----------EDMDDE-----DISP---AVFEGLCE---MSVESINLQKHYFFNISSNTFHCFSGLQE 282 (606)
T ss_dssp EEEEEECC-CC-----------TTSCCC-----CCCG---GGGGGGGG---SEEEEEECTTCCCSSCCTTTTTTCTTCSE
T ss_pred chhheech-hh-----------cccccc-----ccCh---hHhchhhc---CceeEEEeecCccCccCHHHhccccCCCE
Confidence 44333322 11 111111 1111 12222211 37899999999998888888999999999
Q ss_pred EeccCCcCCcCccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCC
Q 002360 374 LGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCH 453 (931)
Q Consensus 374 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~ 453 (931)
|++++|.+. .+|..+..+++|++|++++|.+.+..+.
T Consensus 283 L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~------------------------------------------ 319 (606)
T 3t6q_A 283 LDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI------------------------------------------ 319 (606)
T ss_dssp EECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGG------------------------------------------
T ss_pred EeccCCccC-CCChhhcccccCCEEECccCCcCcCchh------------------------------------------
Confidence 999999988 6788889999999999999988744332
Q ss_pred CCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEccc
Q 002360 454 LGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSN 533 (931)
Q Consensus 454 l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~ 533 (931)
.+..+++|+.|++++|.+.+.++...+..
T Consensus 320 -------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-------------------------------------------- 348 (606)
T 3t6q_A 320 -------SASNFPSLTHLSIKGNTKRLELGTGCLEN-------------------------------------------- 348 (606)
T ss_dssp -------CGGGCTTCSEEECCSCSSCCBCCSSTTTT--------------------------------------------
T ss_pred -------hhhccCcCCEEECCCCCcccccchhhhhc--------------------------------------------
Confidence 23344566666666666554443332222
Q ss_pred CCCccccchhhhccCCCCCCccEEECcCCcccccc--CCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCc
Q 002360 534 NALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGI--PDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNR 611 (931)
Q Consensus 534 n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 611 (931)
+++|++|++++|++++.. +..+..+++|++|++++|++.+..|..|..+++|++|++++|+
T Consensus 349 -----------------l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 349 -----------------LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp -----------------CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred -----------------cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 334445555555544433 4455555666666666666665555556666666666666666
Q ss_pred Cccccch-hhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCcccccc---CCcccCCCCCcCEEEccCCcccc
Q 002360 612 LSGVIPT-SFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGD---FPIQLCRLASLQILDVAYNSLLG 687 (931)
Q Consensus 612 l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~ 687 (931)
+.+..|. .+..+++|++|++++|.+.+..|..+. .+++|++|++++|++++. .+..+..+++|+.|++++|++++
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT-TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCHHHHh-CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 6554433 255666666666666666654454443 566666666666666552 23456778888888888888887
Q ss_pred ccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCC
Q 002360 688 TIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGL 767 (931)
Q Consensus 688 ~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L 767 (931)
..|..|.+++.| +.|||++|++++.+|..+..++.|
T Consensus 491 ~~~~~~~~l~~L--------------------------------------------~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 491 IDQHAFTSLKMM--------------------------------------------NHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp ECTTTTTTCTTC--------------------------------------------CEEECCSSCCCGGGGGGGTTCCSC
T ss_pred cChhhhccccCC--------------------------------------------CEEECCCCccCcCChhHhCccccc
Confidence 777777766655 788888888888888999999999
Q ss_pred CEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCc
Q 002360 768 QSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIP 806 (931)
Q Consensus 768 ~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p 806 (931)
+|+|++|++++.+|..++.+++|+.|++++|++++..+
T Consensus 527 -~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 527 -YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp -EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred -EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999998888889999999999999999997655
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2e-52 Score=512.14 Aligned_cols=223 Identities=23% Similarity=0.259 Sum_probs=177.3
Q ss_pred CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360 551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD 630 (931)
Q Consensus 551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 630 (931)
+++|+.|++++|++++..+..|..+++|++|++++|.+++ +..+++|+.|++++|+++. +|.. ..+++.|+
T Consensus 337 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ 407 (844)
T 3j0a_A 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVT-LPKI---NLTANLIH 407 (844)
T ss_dssp CTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCCC-CCCC---CTTCCEEE
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-----ccCCCCcchhccCCCCccc-cccc---ccccceee
Confidence 5677778888887777777778888888888888888873 2237788888888888883 4433 46788899
Q ss_pred cCCCcccccCchhHHhhcCcCcEEEccCccccccCCc-ccCCCCCcCEEEccCCcccccc-----CccccccccccccCC
Q 002360 631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPI-QLCRLASLQILDVAYNSLLGTI-----PRCINNFSAMATADS 704 (931)
Q Consensus 631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~~~~ 704 (931)
+++|++.+.-.......+++|++|++++|++++..+. .+..+++|+.|+|++|.+++.. |..|.++
T Consensus 408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l-------- 479 (844)
T 3j0a_A 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL-------- 479 (844)
T ss_dssp CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB--------
T ss_pred cccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCc--------
Confidence 9999988432222233689999999999999865443 4566899999999999997433 3334333
Q ss_pred CCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcC
Q 002360 705 SDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDN 784 (931)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 784 (931)
+.|+.|||++|++++.+|..|.++++|++|+|++|++++..|..
T Consensus 480 ------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 523 (844)
T 3j0a_A 480 ------------------------------------SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND 523 (844)
T ss_dssp ------------------------------------CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCC
T ss_pred ------------------------------------ccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhh
Confidence 44589999999999999999999999999999999999877777
Q ss_pred ccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCC
Q 002360 785 IGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS 831 (931)
Q Consensus 785 l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 831 (931)
+. ++|+.|||++|++++.+|..+. +|+.+++++|++.|.++.
T Consensus 524 ~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 524 LP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL 565 (844)
T ss_dssp CC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC
T ss_pred hh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc
Confidence 66 8999999999999999998764 788999999999998864
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.9e-52 Score=493.77 Aligned_cols=537 Identities=22% Similarity=0.183 Sum_probs=401.5
Q ss_pred eEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcCC
Q 002360 172 HLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYS 251 (931)
Q Consensus 172 ~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 251 (931)
+++.+++.++.+|.. -.+++++|++++|.++++++..+.++++|++|++++|.+++..|.+|+++++|++|++++
T Consensus 15 ~~~c~~~~l~~ip~~-----~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDD-----IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp EEECTTSCCSSCCTT-----SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ceEccCCCcccCCCC-----CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 444444555554432 126777778888888777777788888888888888888777777788888888888888
Q ss_pred CcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcc-cCCcccCCCCCCcEEEcCCCcCCC
Q 002360 252 NQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGG-KIPTSFGKLCKLTSFSMASTKLSQ 330 (931)
Q Consensus 252 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~ 330 (931)
|.+++..|..|+++++|++|++++|.+.+..+.. ++.+++|++|++++| .+.+ .+|..++++++|++|++++|.+.+
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFP-IGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSC-CTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccc-cCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCccee
Confidence 8887777888888888888888888876433333 788888888888888 5554 568888888888888888888887
Q ss_pred cchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCC-cCccccccCCCCCCEEEccCCcCCCcc
Q 002360 331 DISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMD-GSIPLSLGQMANLESLDLSNNKLNGTV 409 (931)
Q Consensus 331 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~ 409 (931)
..+..++.+..-. ..+++|++++|.+.+..+..+... +|++|++++|.+. +..|..++.++.|+.+++..+.+.+..
T Consensus 168 ~~~~~~~~l~~L~-~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 245 (606)
T 3vq2_A 168 ITVNDLQFLRENP-QVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245 (606)
T ss_dssp ECTTTTHHHHHCT-TCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred cChhhhhhhhccc-cccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence 7666666551100 114478888888877666655544 7888888888776 456667788888888877655443211
Q ss_pred c-----hhhhccccccceeccCCceeEEecCCCCCCCccccEEEc-cCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcc
Q 002360 410 S-----EIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLEL-RSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIP 483 (931)
Q Consensus 410 ~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L-~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~ 483 (931)
. ...+..+. ...++.+++ ..+.+.+..|. +..+++|+.|++++|.+.. +|
T Consensus 246 ~l~~~~~~~~~~l~----------------------~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~ 301 (606)
T 3vq2_A 246 NLEIFEPSIMEGLC----------------------DVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE 301 (606)
T ss_dssp CCSCCCGGGGTTGG----------------------GSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC
T ss_pred cccccChHHhhhhh----------------------hccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh
Confidence 0 00111111 113445555 44455555555 6666777777777776653 22
Q ss_pred hhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCc
Q 002360 484 RAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNH 563 (931)
Q Consensus 484 ~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 563 (931)
.+..+++|++|++++|.+ +.+|.+ .+++|+.|++++|+
T Consensus 302 --~l~~~~~L~~L~l~~n~l-~~lp~~---------------------------------------~l~~L~~L~l~~n~ 339 (606)
T 3vq2_A 302 --DVPKHFKWQSLSIIRCQL-KQFPTL---------------------------------------DLPFLKSLTLTMNK 339 (606)
T ss_dssp --CCCTTCCCSEEEEESCCC-SSCCCC---------------------------------------CCSSCCEEEEESCS
T ss_pred --hccccccCCEEEcccccC-cccccC---------------------------------------CCCccceeeccCCc
Confidence 222344555555555555 333321 26788888998886
Q ss_pred cccccCCcccCCCCCCEEecCCCcceec--CCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCc
Q 002360 564 FSEGIPDCWMNWPRLRTLNLGNNNFTGS--LPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIP 641 (931)
Q Consensus 564 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 641 (931)
..+.. .+..+++|++|++++|++++. .|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++.+..|
T Consensus 340 ~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~ 416 (606)
T 3vq2_A 340 GSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE 416 (606)
T ss_dssp SCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTT
T ss_pred Cccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccC
Confidence 55544 567889999999999998866 47788889999999999999885 55788899999999999999987766
Q ss_pred hhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCcccc-ccCccccccccccccCCCCCCccccccccCCCc
Q 002360 642 TWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLG-TIPRCINNFSAMATADSSDQSSDILYAFSGDNK 720 (931)
Q Consensus 642 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ 720 (931)
...+..+++|++|++++|.+.+..|..+..+++|+.|++++|++++ .+|..++++++|
T Consensus 417 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--------------------- 475 (606)
T 3vq2_A 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL--------------------- 475 (606)
T ss_dssp TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC---------------------
T ss_pred hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC---------------------
Confidence 3334479999999999999999899999999999999999999998 478777776665
Q ss_pred cccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCc
Q 002360 721 IVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQ 800 (931)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~ 800 (931)
+.|+|++|++++.+|..++.+++|++|+|++|++++.+|..++.+++|++||+++|+
T Consensus 476 -----------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 476 -----------------------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp -----------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred -----------------------CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 889999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCcccccCCC-CCCeeeCCCccccccCCC
Q 002360 801 LSGQIPQSMSNLS-FLNYLNLSNNNLNGEIPS 831 (931)
Q Consensus 801 l~~~~p~~l~~l~-~L~~L~ls~N~l~g~ip~ 831 (931)
++ .+|..+..++ +|++|++++|++.|.+|.
T Consensus 533 l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 533 IE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred Cc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 99 6788899987 699999999999998774
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.8e-51 Score=483.67 Aligned_cols=519 Identities=18% Similarity=0.206 Sum_probs=364.8
Q ss_pred cCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCCCe
Q 002360 93 KHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEH 172 (931)
Q Consensus 93 ~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~ 172 (931)
+++++|+|++|.+++. .+..|.++++|++|+|++|.+++..|.+|.++++|++|+|++|.+..++.
T Consensus 32 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p------------- 97 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP------------- 97 (606)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT-------------
T ss_pred CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh-------------
Confidence 5566666666666643 34456666666666666666665555566666666666666655443321
Q ss_pred EEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCC-CCcccccCCCCCCEEEcCC
Q 002360 173 LYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQG-QIPSRLGNLTSLKHLDLYS 251 (931)
Q Consensus 173 L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~ 251 (931)
..+.++++|++|++++|.+.+.++..++++++|++|++++|.+.+ .+|..++++++|++|++++
T Consensus 98 ---------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~ 162 (606)
T 3vq2_A 98 ---------------GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162 (606)
T ss_dssp ---------------TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred ---------------hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC
Confidence 125678888888888999988888888899999999999998876 5688888999999999999
Q ss_pred CcccccccccccCCCCCC----EEeccCCccccccCccccCCCCCccEEEccCCCCCc-ccCCcccCCCCCCcEEEcCCC
Q 002360 252 NQFNSAVLGWLSKLNDLE----VLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELG-GKIPTSFGKLCKLTSFSMAST 326 (931)
Q Consensus 252 n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~l~~~ 326 (931)
|++++..+..++.+++|+ +|++++|.+. .++...+... +|++|++++| .+. +..|..+.+++.|+.+++..+
T Consensus 163 n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~l~l~~~ 239 (606)
T 3vq2_A 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGN-FNSSNIMKTCLQNLAGLHVHRLILG 239 (606)
T ss_dssp SCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESC-CSCHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccCc-eeeeeeccCC-ccchhHHHHHhcccccccccccccc
Confidence 988888777777665554 7888888887 4444434444 7888888888 443 456667777777777766544
Q ss_pred cCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEec-cCCcCCcCccccccCCCCCCEEEccCCcC
Q 002360 327 KLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGL-SNNQMDGSIPLSLGQMANLESLDLSNNKL 405 (931)
Q Consensus 327 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 405 (931)
.+.+.. .+.. +....+..+..+ .++.+++ ..+.+.+.+|. +..+++|++|++++|.+
T Consensus 240 ~~~~~~-------------~l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~ 297 (606)
T 3vq2_A 240 EFKDER-------------NLEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSI 297 (606)
T ss_dssp CCTTSC-------------CCSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCC
T ss_pred ccccCC-------------cccc-------cChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccc
Confidence 332110 0000 000000111111 2333444 33444444443 44555555555555544
Q ss_pred CCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchh
Q 002360 406 NGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRA 485 (931)
Q Consensus 406 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 485 (931)
. .++ .+..+++|+.|++++|++ +.+|.
T Consensus 298 ~-~l~--------------------------------------------------~l~~~~~L~~L~l~~n~l-~~lp~- 324 (606)
T 3vq2_A 298 K-YLE--------------------------------------------------DVPKHFKWQSLSIIRCQL-KQFPT- 324 (606)
T ss_dssp C-CCC--------------------------------------------------CCCTTCCCSEEEEESCCC-SSCCC-
T ss_pred h-hhh--------------------------------------------------hccccccCCEEEcccccC-ccccc-
Confidence 3 111 112223333333333333 22331
Q ss_pred HHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccc
Q 002360 486 FWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFS 565 (931)
Q Consensus 486 ~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 565 (931)
+ .+++|++|++++|...+.++ +..+++|++|++++|+++
T Consensus 325 ~--~l~~L~~L~l~~n~~~~~~~---------------------------------------~~~l~~L~~L~ls~n~l~ 363 (606)
T 3vq2_A 325 L--DLPFLKSLTLTMNKGSISFK---------------------------------------KVALPSLSYLDLSRNALS 363 (606)
T ss_dssp C--CCSSCCEEEEESCSSCEECC---------------------------------------CCCCTTCCEEECCSSCEE
T ss_pred C--CCCccceeeccCCcCccchh---------------------------------------hccCCCCCEEECcCCccC
Confidence 1 33444455554443222111 123578889999999888
Q ss_pred cc--cCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccc-hhhccCCCCcEEecCCCcccccCch
Q 002360 566 EG--IPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIP-TSFKNFSILEALDVGENELVGSIPT 642 (931)
Q Consensus 566 ~~--~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~ 642 (931)
+. .+..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+..| ..+..+++|++|++++|++.+..|.
T Consensus 364 ~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 442 (606)
T 3vq2_A 364 FSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442 (606)
T ss_dssp EEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT
T ss_pred CCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh
Confidence 75 37788889999999999999885 66888899999999999999998877 6888999999999999999987777
Q ss_pred hHHhhcCcCcEEEccCccccc-cCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCcc
Q 002360 643 WIGERFSRLMILILRSNKFHG-DFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKI 721 (931)
Q Consensus 643 ~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~ 721 (931)
.+. .+++|++|++++|++++ .+|..+..+++|+.|++++|++++..|..+.++++|
T Consensus 443 ~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------------------- 499 (606)
T 3vq2_A 443 IFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL---------------------- 499 (606)
T ss_dssp TTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC----------------------
T ss_pred hhc-CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC----------------------
Confidence 776 79999999999999998 478899999999999999999999888888777666
Q ss_pred ccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcC-CCCEEeccCCc
Q 002360 722 VEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR-SIESLDFSANQ 800 (931)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~LdLs~N~ 800 (931)
+.|+|++|++++.+|..++.+++|++|+|++|+++ .+|..+..++ +|++|++++|+
T Consensus 500 ----------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 500 ----------------------QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp ----------------------CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCC
T ss_pred ----------------------CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCC
Confidence 89999999999999999999999999999999999 7888899997 69999999999
Q ss_pred CcccCc
Q 002360 801 LSGQIP 806 (931)
Q Consensus 801 l~~~~p 806 (931)
+.+..+
T Consensus 557 ~~c~c~ 562 (606)
T 3vq2_A 557 VACICE 562 (606)
T ss_dssp CCCSST
T ss_pred cccCCc
Confidence 997655
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.1e-51 Score=485.93 Aligned_cols=527 Identities=17% Similarity=0.221 Sum_probs=286.3
Q ss_pred CCCHHHHHHHHHhhhcCCCCCC--------CCCCCCCCCCCCcCc---cceEecCCCCcEEEEEcCCCCCCCchhhhccc
Q 002360 11 SCIESEREALLKLKHDLRDPSH--------RLASWIGDNGDCCKW---GGVLCGNFTGHVLELNLQNPFSPDDNEAYQRS 79 (931)
Q Consensus 11 ~~~~~~~~~ll~~k~~~~d~~~--------~l~~w~~~~~~~c~w---~g~~c~~~~~~v~~L~l~~~~~~~~~~~~~~~ 79 (931)
.....|++||.++|.++.++.. ..++|. .+.+||.| .||+|+. .+||++|+|+++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~-~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~------------ 91 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN-FNKELDMWGAQPGVSLNS-NGRVTGLSLEGF------------ 91 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC-CSSCGGGTTCCTTEEECT-TCCEEEEECTTS------------
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC-CCCCcccccCCCCeEEcC-CCCEEEEEecCc------------
Confidence 3445799999999999975532 245898 67899999 9999975 489999999997
Q ss_pred ccceeecccccCccCCcEeeCCCCCCC------C-----CCchhhhhcCCCCceeecccccccccCCcccCCC-CCCCEE
Q 002360 80 MLVGKINPSLLELKHLVHLDLSGNDFQ------G-----IQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNL-SNLQYL 147 (931)
Q Consensus 80 ~~~~~l~~~l~~l~~L~~L~Ls~n~~~------~-----~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L-~~L~~L 147 (931)
.+.|.+|++++++++|++|+|++|.+. + ..+|... +.+|+ ++++.+.+.+..|..+..+ ..+..+
T Consensus 92 ~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~ 168 (636)
T 4eco_A 92 GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINS 168 (636)
T ss_dssp CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHH
T ss_pred ccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhc
Confidence 899999999999999999999999751 1 0244433 55677 8888887776666554321 111111
Q ss_pred EccCCcccccccCccccCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEc--
Q 002360 148 DLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDL-- 225 (931)
Q Consensus 148 ~Ls~n~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-- 225 (931)
++.... +.. .....++.+.+
T Consensus 169 ~l~~~~----------------------------------------------------~~~------~~~~~l~~l~l~~ 190 (636)
T 4eco_A 169 DPQQKS----------------------------------------------------IKK------SSRITLKDTQIGQ 190 (636)
T ss_dssp CTTSCC----------------------------------------------------CCC------CCCCCCCTTTTTC
T ss_pred Cccccc----------------------------------------------------ccc------ccccchhhhhhcc
Confidence 111000 000 00001111111
Q ss_pred cCCcCCCCCcccccCCCCCCEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccC--CCCCccEEEccCCCC
Q 002360 226 SGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLD--NLTSIQKLLLSWNDE 303 (931)
Q Consensus 226 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~--~l~~L~~L~L~~n~~ 303 (931)
..|++++ +|..++++++|++|++++|.+++.....- ..+ -..+...+.+|.. ++ ++++|++|++++| .
T Consensus 191 ~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~------~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n-~ 260 (636)
T 4eco_A 191 LSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEA-WEN------ENSEYAQQYKTED-LKWDNLKDLTDVEVYNC-P 260 (636)
T ss_dssp CSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSS-CSC------TTSHHHHHHTTSC-CCGGGCTTCCEEEEECC-T
T ss_pred ccCCCcc-CCHHHhcccCCCEEECcCCcccccccccc-ccc------cccchhcccCchh-hhhcccCCCCEEEecCC-c
Confidence 1344444 45555555555555555555544200000 000 0000000014443 44 5555555555555 4
Q ss_pred CcccCCcccCCCCCCcEEEcCCCc-CCC-cchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcC
Q 002360 304 LGGKIPTSFGKLCKLTSFSMASTK-LSQ-DISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQM 381 (931)
Q Consensus 304 ~~~~~~~~~~~l~~L~~L~l~~~~-l~~-~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 381 (931)
+.+.+|..++++++|+.|++++|. +++ .+|..++.+. .+..+++|++|++++|.+
T Consensus 261 l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~-----------------------~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA-----------------------DAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHH-----------------------HSGGGGTCCEEECCSSCC
T ss_pred CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhh-----------------------ccccCCCCCEEECCCCcC
Confidence 445555555555555555555555 554 4555443320 012235566666666665
Q ss_pred CcCccc--cccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcC
Q 002360 382 DGSIPL--SLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFP 459 (931)
Q Consensus 382 ~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 459 (931)
. .+|. .++.+++|++|++++|+++|.+| .+..+++|
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L--------------------------------------- 355 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKL--------------------------------------- 355 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEE---------------------------------------
T ss_pred C-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCC---------------------------------------
Confidence 5 5555 55666666666666665554433 12221111
Q ss_pred hhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccc
Q 002360 460 LWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGS 539 (931)
Q Consensus 460 ~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~ 539 (931)
+.|++++|+++ .+|..
T Consensus 356 ---------~~L~L~~N~l~-~lp~~------------------------------------------------------ 371 (636)
T 4eco_A 356 ---------ASLNLAYNQIT-EIPAN------------------------------------------------------ 371 (636)
T ss_dssp ---------SEEECCSSEEE-ECCTT------------------------------------------------------
T ss_pred ---------CEEECCCCccc-cccHh------------------------------------------------------
Confidence 11111111111 00000
Q ss_pred cchhhhccCCCCCC-ccEEECcCCccccccCCcccCCC--CCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCcccc
Q 002360 540 IFHLICQGENFSKN-IEFLKLSTNHFSEGIPDCWMNWP--RLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVI 616 (931)
Q Consensus 540 ~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 616 (931)
+..+++ |+.|++++|+++ .+|..+..++ +|++|++++|++++..|..+....
T Consensus 372 --------l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~---------------- 426 (636)
T 4eco_A 372 --------FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD---------------- 426 (636)
T ss_dssp --------SEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC----------------
T ss_pred --------hhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc----------------
Confidence 001233 455555555554 2444444332 455555555555555554444000
Q ss_pred chhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccC--------CCCCcCEEEccCCccccc
Q 002360 617 PTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLC--------RLASLQILDVAYNSLLGT 688 (931)
Q Consensus 617 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~--------~l~~L~~L~Ls~N~l~~~ 688 (931)
.....+++|++|++++|+++ .+|..++..+++|++|++++|+++ .+|.... ++++|+.|+|++|+++ .
T Consensus 427 -~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 502 (636)
T 4eco_A 427 -PTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-K 502 (636)
T ss_dssp -SSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-B
T ss_pred -cccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-c
Confidence 00003445555555555554 444444434555555555555555 3332221 2226667777777666 5
Q ss_pred cCcccc--ccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCC
Q 002360 689 IPRCIN--NFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQG 766 (931)
Q Consensus 689 ~p~~~~--~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~ 766 (931)
+|..+. .+++| +.|+|++|++++ +|..++.+++
T Consensus 503 lp~~~~~~~l~~L--------------------------------------------~~L~Ls~N~l~~-ip~~~~~l~~ 537 (636)
T 4eco_A 503 LSDDFRATTLPYL--------------------------------------------VGIDLSYNSFSK-FPTQPLNSST 537 (636)
T ss_dssp CCGGGSTTTCTTC--------------------------------------------CEEECCSSCCSS-CCCGGGGCSS
T ss_pred cChhhhhccCCCc--------------------------------------------CEEECCCCCCCC-cChhhhcCCC
Confidence 555443 43333 667777777765 6667777777
Q ss_pred CCEEEc------cCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCcccccc
Q 002360 767 LQSLNL------SHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE 828 (931)
Q Consensus 767 L~~L~L------s~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 828 (931)
|++|+| ++|++.+.+|..++.+++|++|||++|++ +.+|..+. ++|+.||+++|++...
T Consensus 538 L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 777777 56778888888888888999999999988 57787766 7888999999987653
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2e-50 Score=494.46 Aligned_cols=525 Identities=22% Similarity=0.219 Sum_probs=293.6
Q ss_pred CccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccC-CcccCCCCCCCEEEccCCcccccccCccccCCCCC
Q 002360 91 ELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMI-PHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSL 169 (931)
Q Consensus 91 ~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~-p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~ 169 (931)
-.++|++|||++|.++.. .|..|.++++|++|+|++|...+.+ |.+|.++++|++|+|++|.+..+.... +.++++
T Consensus 22 lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~--~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA--FQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS--SCSCSS
T ss_pred CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH--ccCCcc
Confidence 346778888888887765 4677788888888888887554444 677788888888888877776553222 456666
Q ss_pred CCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCc-cccCCCCCCCEEEccCCcCCCCCcccccCC--CCCCE
Q 002360 170 LEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL-LSSANFSSLTTLDLSGNQFQGQIPSRLGNL--TSLKH 246 (931)
Q Consensus 170 L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~ 246 (931)
|++|++++|.++........+.++++|++|++++|.+.+..+ ..++++++|++|++++|.+.+..+..+..+ ++|+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 666666666655421111124455566666666665555443 345555566666666555555555555544 55555
Q ss_pred EEcCCCcccccccccccCCCC------CCEEeccCCccccccCccccC--CCCCccEEEccCCCCCcccCCcccCCCCCC
Q 002360 247 LDLYSNQFNSAVLGWLSKLND------LEVLSLEDNRLQGDISSLGLD--NLTSIQKLLLSWNDELGGKIPTSFGKLCKL 318 (931)
Q Consensus 247 L~L~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~~l~--~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 318 (931)
|++++|.+.+..+..++.+++ |+.|++++|.+.+.++..... ..+.++.+.+..+ ....
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~-~~~~------------ 245 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH-IMGA------------ 245 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS-CCBC------------
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc-cccc------------
Confidence 555555555544444444333 555555555444333332111 1123333333322 1000
Q ss_pred cEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEE
Q 002360 319 TSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESL 398 (931)
Q Consensus 319 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 398 (931)
.+..+.+.+.....+..+ ..++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..|..+++|++|
T Consensus 246 ---~~~~~~l~~~~~~~f~~l---~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 319 (844)
T 3j0a_A 246 ---GFGFHNIKDPDQNTFAGL---ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319 (844)
T ss_dssp ---SSSCSSSTTGGGTTTTTT---TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE
T ss_pred ---cccccccCCCChhhhhcc---ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE
Confidence 000111111111111111 11345555555555544444444445555555555555444444444444444444
Q ss_pred EccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCC
Q 002360 399 DLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRI 478 (931)
Q Consensus 399 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i 478 (931)
++++|.++ +..|..+..+++|+.|++++|++
T Consensus 320 ~Ls~N~l~-------------------------------------------------~~~~~~~~~l~~L~~L~L~~N~i 350 (844)
T 3j0a_A 320 NLSYNLLG-------------------------------------------------ELYSSNFYGLPKVAYIDLQKNHI 350 (844)
T ss_dssp EEESCCCS-------------------------------------------------CCCSCSCSSCTTCCEEECCSCCC
T ss_pred ECCCCCCC-------------------------------------------------ccCHHHhcCCCCCCEEECCCCCC
Confidence 44444443 23334444455555666665555
Q ss_pred CCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEE
Q 002360 479 SDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLK 558 (931)
Q Consensus 479 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~ 558 (931)
.+..+..+ .. +++|+.|+
T Consensus 351 ~~~~~~~~-~~-------------------------------------------------------------l~~L~~L~ 368 (844)
T 3j0a_A 351 AIIQDQTF-KF-------------------------------------------------------------LEKLQTLD 368 (844)
T ss_dssp CCCCSSCS-CS-------------------------------------------------------------CCCCCEEE
T ss_pred CccChhhh-cC-------------------------------------------------------------CCCCCEEE
Confidence 43332221 11 23444444
Q ss_pred CcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCcccc-chhhccCCCCcEEecCCCccc
Q 002360 559 LSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVI-PTSFKNFSILEALDVGENELV 637 (931)
Q Consensus 559 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~ 637 (931)
+++|.+++. ..+++|+.|++++|+++ .+|.. ..+++.|++++|++++.. +..+.++++|++|++++|+++
T Consensus 369 Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 439 (844)
T 3j0a_A 369 LRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439 (844)
T ss_dssp EETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence 444444331 11344555555555554 23322 234555566666555432 122345666666666666665
Q ss_pred ccCchhHHhhcCcCcEEEccCcccc-----ccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcccc
Q 002360 638 GSIPTWIGERFSRLMILILRSNKFH-----GDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDIL 712 (931)
Q Consensus 638 ~~~p~~~~~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~ 712 (931)
+..+......+++|+.|++++|.++ +..+..+..+++|+.|+|++|++++..|..|.++++|
T Consensus 440 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------------- 506 (844)
T 3j0a_A 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL------------- 506 (844)
T ss_dssp CCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC-------------
T ss_pred ccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhh-------------
Confidence 4333222224566777777777765 3345567788889999999999988888777776665
Q ss_pred ccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCC
Q 002360 713 YAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE 792 (931)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 792 (931)
+.|+|++|++++..|..+. ++|+.|+|++|++++.+|..| .+|+
T Consensus 507 -------------------------------~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~ 550 (844)
T 3j0a_A 507 -------------------------------RGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLS 550 (844)
T ss_dssp -------------------------------SEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCC
T ss_pred -------------------------------heeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcC
Confidence 7899999999876666665 899999999999999999876 4789
Q ss_pred EEeccCCcCcccCc
Q 002360 793 SLDFSANQLSGQIP 806 (931)
Q Consensus 793 ~LdLs~N~l~~~~p 806 (931)
.|++++|++.+..+
T Consensus 551 ~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 551 VLDITHNKFICECE 564 (844)
T ss_dssp EEEEEEECCCCSSS
T ss_pred EEEecCCCcccccc
Confidence 99999999987654
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.9e-49 Score=473.35 Aligned_cols=513 Identities=19% Similarity=0.209 Sum_probs=301.3
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCCCCCCCCCCC----CCC--cCc------------cceEecCCCCcEEEEEcCCCCC
Q 002360 8 NGTSCIESEREALLKLKHDLRDPSHRLASWIGDN----GDC--CKW------------GGVLCGNFTGHVLELNLQNPFS 69 (931)
Q Consensus 8 ~~~~~~~~~~~~ll~~k~~~~d~~~~l~~w~~~~----~~~--c~w------------~g~~c~~~~~~v~~L~l~~~~~ 69 (931)
.++.+..+|++||++||.++.|| +|..++ .+| |.| .||+|+. .+||++|+|+++
T Consensus 262 ~~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~-- 333 (876)
T 4ecn_A 262 KETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF-- 333 (876)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT--
T ss_pred cccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccC--
Confidence 34567778999999999999877 787433 355 999 9999985 689999999997
Q ss_pred CCchhhhcccccceeecccccCccCCcEeeC-CCCCCCCCCchhhh----------------------------------
Q 002360 70 PDDNEAYQRSMLVGKINPSLLELKHLVHLDL-SGNDFQGIQIPKYL---------------------------------- 114 (931)
Q Consensus 70 ~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~L-s~n~~~~~~l~~~l---------------------------------- 114 (931)
.+.|.+|++++++++|++|+| ++|.+.+. .|-..
T Consensus 334 ----------~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 334 ----------GAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp ----------CCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred ----------CCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 899999999999999999999 88866543 11000
Q ss_pred -----------------hcCCCCceeeccc--ccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCCCeEEc
Q 002360 115 -----------------ASLVNLRYLNLSQ--ARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYI 175 (931)
Q Consensus 115 -----------------~~l~~L~~L~Ls~--n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~l 175 (931)
.....++.+.+.. |.+++ +|..|+++++|++|+|++|
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N----------------------- 458 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANS----------------------- 458 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESC-----------------------
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCC-----------------------
Confidence 0011122222221 34443 4444444444444444444
Q ss_pred cCcccCCC--CchHHHhccCCCCCEEEcCCCCCCCCCccccC--CCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcCC
Q 002360 176 SFVNLSKA--SDSLLVINSLHSLKELKLSFCELHHFPLLSSA--NFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYS 251 (931)
Q Consensus 176 ~~n~~~~~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 251 (931)
.++.. +.. . +..+.+...+..|..++ ++++|++|++++|.+.+.+|..|+++++|++|++++
T Consensus 459 ---~Lsg~~i~~~-----~------~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 459 ---PFTYDNIAVD-----W------EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp ---CCCGGGBSSS-----C------SCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred ---cCCCCccccc-----c------cccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 43330 000 0 00000111112233444 667777777777776667777777777777777777
Q ss_pred Cc-ccc-cccccccCCC-------CCCEEeccCCccccccCc--cccCCCCCccEEEccCCCCCcccCCcccCCCCCCcE
Q 002360 252 NQ-FNS-AVLGWLSKLN-------DLEVLSLEDNRLQGDISS--LGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTS 320 (931)
Q Consensus 252 n~-l~~-~~~~~l~~l~-------~L~~L~L~~n~l~~~~~~--~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 320 (931)
|+ +++ .+|..++.++ +|++|++++|.+. .+|. . +..+++|++|++++|
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~-l~~L~~L~~L~Ls~N------------------- 583 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS-LQKMVKLGLLDCVHN------------------- 583 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH-HTTCTTCCEEECTTS-------------------
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh-hhcCCCCCEEECCCC-------------------
Confidence 76 665 5555444333 5555555555554 4443 2 444444444444444
Q ss_pred EEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCC-CCEEeccCCcCCcCccccccCCCC--CCE
Q 002360 321 FSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKR-LNFLGLSNNQMDGSIPLSLGQMAN--LES 397 (931)
Q Consensus 321 L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~--L~~ 397 (931)
.+. .+| .++.+ ++|+.|++++|++. .+|..+..+++ |++|++++|.+. .+|..+..++. |+.
T Consensus 584 ------~l~-~lp-~~~~L-----~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~ 648 (876)
T 4ecn_A 584 ------KVR-HLE-AFGTN-----VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGS 648 (876)
T ss_dssp ------CCC-BCC-CCCTT-----SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEE
T ss_pred ------Ccc-cch-hhcCC-----CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCE
Confidence 444 333 33333 56667777777766 56666777888 889999888887 66766655543 777
Q ss_pred EEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCC
Q 002360 398 LDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTR 477 (931)
Q Consensus 398 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~ 477 (931)
|++++|++.+.++.. +..+..+
T Consensus 649 L~Ls~N~l~g~ip~l----------------------------------------------~~~l~~~------------ 670 (876)
T 4ecn_A 649 VDFSYNKIGSEGRNI----------------------------------------------SCSMDDY------------ 670 (876)
T ss_dssp EECCSSCTTTTSSSC----------------------------------------------SSCTTTC------------
T ss_pred EECcCCcCCCccccc----------------------------------------------hhhhccc------------
Confidence 777777766543320 0000000
Q ss_pred CCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEE
Q 002360 478 ISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFL 557 (931)
Q Consensus 478 i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L 557 (931)
..++|+.|
T Consensus 671 ------------------------------------------------------------------------~~~~L~~L 678 (876)
T 4ecn_A 671 ------------------------------------------------------------------------KGINASTV 678 (876)
T ss_dssp ------------------------------------------------------------------------CCCCEEEE
T ss_pred ------------------------------------------------------------------------cCCCcCEE
Confidence 01244555
Q ss_pred ECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCccc
Q 002360 558 KLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELV 637 (931)
Q Consensus 558 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 637 (931)
++++|+++...+..+..+++|+.|+|++|+++ .+|..+.... +..+.++++|+.|+|++|+++
T Consensus 679 ~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~----------------~~~l~nl~~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPK----------------DGNYKNTYLLTTIDLRFNKLT 741 (876)
T ss_dssp ECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT----------------TSCCTTGGGCCEEECCSSCCC
T ss_pred EccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc----------------cccccccCCccEEECCCCCCc
Confidence 55555554322222234555556666665555 3333322110 001122334555555555554
Q ss_pred ccCchhHH-hhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcccccccc
Q 002360 638 GSIPTWIG-ERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFS 716 (931)
Q Consensus 638 ~~~p~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~ 716 (931)
.+|..++ ..+++|+.|+|++|++++ +|..+..+++|+.|+|++|+.
T Consensus 742 -~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~------------------------------- 788 (876)
T 4ecn_A 742 -SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRD------------------------------- 788 (876)
T ss_dssp -CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBC-------------------------------
T ss_pred -cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCC-------------------------------
Confidence 4554443 235555555555555554 455555566666666666551
Q ss_pred CCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEec
Q 002360 717 GDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDF 796 (931)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdL 796 (931)
+++|++.+.+|..++.+++|++|+|++|++ +.+|..+. ++|+.|||
T Consensus 789 -------------------------------ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdL 834 (876)
T 4ecn_A 789 -------------------------------AEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDI 834 (876)
T ss_dssp -------------------------------TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEEC
T ss_pred -------------------------------cccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEEC
Confidence 345666667777788888888888888888 58887765 58888888
Q ss_pred cCCcCcccCcccccCCCCCCeeeCCCccccc
Q 002360 797 SANQLSGQIPQSMSNLSFLNYLNLSNNNLNG 827 (931)
Q Consensus 797 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 827 (931)
++|++....+..+.....+..+.+++|++..
T Consensus 835 s~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 835 ADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp CSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred CCCCCCccChHHccccccchheeecCCCccc
Confidence 8888887777777666667777788876653
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-47 Score=449.47 Aligned_cols=515 Identities=21% Similarity=0.213 Sum_probs=377.0
Q ss_pred eEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcCC
Q 002360 172 HLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYS 251 (931)
Q Consensus 172 ~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 251 (931)
.++.++..++.+|.. -.+++++|++++|.++++++..|.++++|++|++++|++++..+..|+++++|++|++++
T Consensus 11 ~~~c~~~~l~~ip~~-----l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 11 TYQCMELNFYKIPDN-----LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp EEECCSSCCSSCCSS-----SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred EEEeCCCCccccCCC-----ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 344445555555431 135688888888888888888888888899999988888877777888888899999998
Q ss_pred CcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcc-cCCcccCCCCCCcEEEcCCCcCCC
Q 002360 252 NQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGG-KIPTSFGKLCKLTSFSMASTKLSQ 330 (931)
Q Consensus 252 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~ 330 (931)
|.+++..+..|+.+++|++|++++|.+. .++...++.+++|++|++++| .+.+ .+|..++++++|+.|++++|.+.+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred CcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCccce
Confidence 8888887888888889999999888887 444444888888888888888 6655 568888888888888888888887
Q ss_pred cchhhhhhcccccccCc----cEEEcCCcccccccccccCCCCCCCEEeccCCcCCc-CccccccCCCCCCEEEccCCcC
Q 002360 331 DISEILGIFSGCVAYEL----ESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDG-SIPLSLGQMANLESLDLSNNKL 405 (931)
Q Consensus 331 ~~~~~~~~~~~~~~~~L----~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l 405 (931)
..+..++.+ .+| +.+++++|.+.+..+..+... +|++|++++|.... .++..+..++.++.+.+....+
T Consensus 164 ~~~~~~~~l-----~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 237 (570)
T 2z63_A 164 IYCTDLRVL-----HQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237 (570)
T ss_dssp ECGGGGHHH-----HTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC
T ss_pred ecHHHccch-----hccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccc
Confidence 777766666 556 778888888877777666655 68888887774432 2444556666666655543322
Q ss_pred CCccchhhhccccccceeccCCceeEEecCCCCCCCc--cccEEEccCC-CCCCCcChhhhccCCCcEEeCCCCCCCCCc
Q 002360 406 NGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPF--QLTVLELRSC-HLGPRFPLWLQLQKKLNDLDISSTRISDKI 482 (931)
Q Consensus 406 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~L~~~-~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~ 482 (931)
... ..++ ......+..+. .++.++++++ .+.+..|..+..+++|+.|++++|.+.+ +
T Consensus 238 ~~~---------~~l~----------~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l 297 (570)
T 2z63_A 238 RNE---------GNLE----------KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-V 297 (570)
T ss_dssp CCC---------SSCE----------ECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-C
T ss_pred cCc---------hhhh----------hcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-h
Confidence 110 0000 00001111111 2334444444 3334444555555555555555544432 1
Q ss_pred chhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCC
Q 002360 483 PRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTN 562 (931)
Q Consensus 483 ~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n 562 (931)
|..+ ..+ +|+.|++++|
T Consensus 298 ~~~~--------------------------------------------------------------~~~-~L~~L~l~~n 314 (570)
T 2z63_A 298 KDFS--------------------------------------------------------------YNF-GWQHLELVNC 314 (570)
T ss_dssp CBCC--------------------------------------------------------------SCC-CCSEEEEESC
T ss_pred hhhh--------------------------------------------------------------ccC-CccEEeeccC
Confidence 2111 123 5777777777
Q ss_pred ccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCcccc--chhhccCCCCcEEecCCCcccccC
Q 002360 563 HFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVI--PTSFKNFSILEALDVGENELVGSI 640 (931)
Q Consensus 563 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~ 640 (931)
.+.. +|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+++.. |..+.++++|++|++++|++.+ +
T Consensus 315 ~~~~-l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~ 388 (570)
T 2z63_A 315 KFGQ-FPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-M 388 (570)
T ss_dssp BCSS-CCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-E
T ss_pred cccc-cCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-c
Confidence 7763 443 3567788888888887765554 56788888888888887654 6778888889999999998874 4
Q ss_pred chhHHhhcCcCcEEEccCccccccCC-cccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCC
Q 002360 641 PTWIGERFSRLMILILRSNKFHGDFP-IQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDN 719 (931)
Q Consensus 641 p~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~ 719 (931)
|..+. .+++|++|++++|.+.+..| ..+..+++|+.|++++|++.+..|..+.++++|
T Consensus 389 ~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------------- 447 (570)
T 2z63_A 389 SSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-------------------- 447 (570)
T ss_dssp EEEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC--------------------
T ss_pred ccccc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC--------------------
Confidence 44444 78899999999999887766 567889999999999999998888877776665
Q ss_pred ccccceeEEeecchhhhhhhccceeEEEcccCccc-ccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccC
Q 002360 720 KIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFS-GEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSA 798 (931)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~ 798 (931)
+.|++++|+++ +.+|..++.+++|++|+|++|++++..|..|+.+++|++|++++
T Consensus 448 ------------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 448 ------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp ------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ------------------------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 88999999998 67899999999999999999999998899999999999999999
Q ss_pred CcCcccCcccccCCCCCCeeeCCCccccccCCCCC
Q 002360 799 NQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSST 833 (931)
Q Consensus 799 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~ 833 (931)
|++++..|..+..+++|+.|++++|+++|.+|...
T Consensus 504 n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 99999988899999999999999999999998753
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.4e-47 Score=444.96 Aligned_cols=505 Identities=21% Similarity=0.237 Sum_probs=321.2
Q ss_pred eecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccc
Q 002360 84 KINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISW 163 (931)
Q Consensus 84 ~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~ 163 (931)
.+|..+ .+++++|++++|.+++. .+..|..+++|++|+|++|.+++..|.+|+++++|++|++++|.+..++..
T Consensus 21 ~ip~~l--~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~--- 94 (570)
T 2z63_A 21 KIPDNL--PFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG--- 94 (570)
T ss_dssp SCCSSS--CSSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT---
T ss_pred ccCCCc--cccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh---
Confidence 345443 24677888888887754 355677788888888888877766667777788888888877776555432
Q ss_pred cCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCC-CCcccccCCC
Q 002360 164 LSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQG-QIPSRLGNLT 242 (931)
Q Consensus 164 l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~ 242 (931)
.+..+++|++|++++|.+..+++..++++++|++|++++|.+.+ .+|..+++++
T Consensus 95 -------------------------~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~ 149 (570)
T 2z63_A 95 -------------------------AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149 (570)
T ss_dssp -------------------------TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred -------------------------hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccC
Confidence 24456666666666666666666567777777777777777765 3577777777
Q ss_pred CCCEEEcCCCcccccccccccCCCCC----CEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCC
Q 002360 243 SLKHLDLYSNQFNSAVLGWLSKLNDL----EVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKL 318 (931)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 318 (931)
+|++|++++|.+++..+..++.+++| +.|++++|.+.+..+.. +... +|++|++++|..-...++..+..++.+
T Consensus 150 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~-~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l 227 (570)
T 2z63_A 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGL 227 (570)
T ss_dssp TCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT-TTTC-EEEEEEEESCCSCTTHHHHHHHTTTTC
T ss_pred CCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHH-hccC-cceeEecccccccccchhhhhcCcccc
Confidence 77777777777777666667666666 67777777776443332 4444 677777777633333445555666666
Q ss_pred cEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCC--CCCEEeccCC-cCCcCccccccCCCCC
Q 002360 319 TSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFK--RLNFLGLSNN-QMDGSIPLSLGQMANL 395 (931)
Q Consensus 319 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n-~l~~~~p~~~~~l~~L 395 (931)
+...+....+... ..++. +. ...+..++ .++.++++++ .+.+..|..+..+++|
T Consensus 228 ~~~~l~~~~~~~~-------------~~l~~--~~--------~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L 284 (570)
T 2z63_A 228 EVHRLVLGEFRNE-------------GNLEK--FD--------KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284 (570)
T ss_dssp EEEEEEEEECCCC-------------SSCEE--CC--------TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred ceeeeccccccCc-------------hhhhh--cc--------hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence 6554432221110 00110 00 01111111 2344455544 4444555555666666
Q ss_pred CEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCC
Q 002360 396 ESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISS 475 (931)
Q Consensus 396 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~ 475 (931)
++|++++|.+.+ ++. ++..+ +|+.|++++
T Consensus 285 ~~L~l~~~~l~~-l~~-------------------------------------------------~~~~~-~L~~L~l~~ 313 (570)
T 2z63_A 285 SSFSLVSVTIER-VKD-------------------------------------------------FSYNF-GWQHLELVN 313 (570)
T ss_dssp SEEEEESCEECS-CCB-------------------------------------------------CCSCC-CCSEEEEES
T ss_pred cEEEecCccchh-hhh-------------------------------------------------hhccC-CccEEeecc
Confidence 666666665541 221 11112 333333333
Q ss_pred CCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCcc
Q 002360 476 TRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIE 555 (931)
Q Consensus 476 n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~ 555 (931)
|.+. .+|.. . +++|+
T Consensus 314 n~~~-~l~~~---~-------------------------------------------------------------l~~L~ 328 (570)
T 2z63_A 314 CKFG-QFPTL---K-------------------------------------------------------------LKSLK 328 (570)
T ss_dssp CBCS-SCCBC---B-------------------------------------------------------------CSSCC
T ss_pred Cccc-ccCcc---c-------------------------------------------------------------ccccC
Confidence 3332 11110 1 12333
Q ss_pred EEECcCCccccccCCcccCCCCCCEEecCCCcceecC--CCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCC
Q 002360 556 FLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSL--PMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGE 633 (931)
Q Consensus 556 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 633 (931)
.|++++|.+.+..+. ..+++|++|++++|++++.. |..+..+++|++|++++|.+.+..+. +..+++|+.|++++
T Consensus 329 ~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~ 405 (570)
T 2z63_A 329 RLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQH 405 (570)
T ss_dssp EEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTT
T ss_pred EEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccC
Confidence 344444433332222 34455555555555555332 44555666667777777666654443 66777777777777
Q ss_pred CcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccc-cccCccccccccccccCCCCCCcccc
Q 002360 634 NELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLL-GTIPRCINNFSAMATADSSDQSSDIL 712 (931)
Q Consensus 634 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~~~~~~~~~~~~ 712 (931)
|.+.+..|...+..+++|++|++++|.+.+..|..+..+++|+.|++++|+++ +.+|..+..+++|
T Consensus 406 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L------------- 472 (570)
T 2z63_A 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL------------- 472 (570)
T ss_dssp SEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-------------
T ss_pred CccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC-------------
Confidence 77775555333346788888888888888778888888888999999999887 5778777766655
Q ss_pred ccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCC
Q 002360 713 YAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE 792 (931)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 792 (931)
+.|+|++|++++..|..+..+++|++|++++|++++.+|..|+.+++|+
T Consensus 473 -------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 473 -------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp -------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred -------------------------------CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence 7899999999988899999999999999999999988888899999999
Q ss_pred EEeccCCcCcccCcc
Q 002360 793 SLDFSANQLSGQIPQ 807 (931)
Q Consensus 793 ~LdLs~N~l~~~~p~ 807 (931)
.|++++|++++..|.
T Consensus 522 ~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 522 KIWLHTNPWDCSCPR 536 (570)
T ss_dssp EEECCSSCBCCCTTT
T ss_pred EEEecCCcccCCCcc
Confidence 999999999988774
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.9e-46 Score=437.91 Aligned_cols=201 Identities=22% Similarity=0.294 Sum_probs=163.5
Q ss_pred CCCCCEEecCCCcceecCCCcc-cCCCCCCEEEccCCcCccccch---hhccCCCCcEEecCCCcccccCch--hHHhhc
Q 002360 575 WPRLRTLNLGNNNFTGSLPMSI-GTLTSLRSLNLRNNRLSGVIPT---SFKNFSILEALDVGENELVGSIPT--WIGERF 648 (931)
Q Consensus 575 l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~p~--~~~~~l 648 (931)
.++|+.|++++|++. .+|..+ ..+++|++|++++|++++..|. .+..+++|++|++++|++++ +|. ..+..+
T Consensus 309 ~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l 386 (549)
T 2z81_A 309 LEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTL 386 (549)
T ss_dssp STTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGC
T ss_pred cccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc-cccchhhhhcC
Confidence 457888888888876 566555 4688888888888888876643 36778888888888888874 432 233478
Q ss_pred CcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEE
Q 002360 649 SRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLV 728 (931)
Q Consensus 649 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (931)
++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|..+
T Consensus 387 ~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~----------------------------------- 429 (549)
T 2z81_A 387 KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI----------------------------------- 429 (549)
T ss_dssp TTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS-----------------------------------
T ss_pred CCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh-----------------------------------
Confidence 89999999999888 67888888999999999999987 333322
Q ss_pred eecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCccc
Q 002360 729 MKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQS 808 (931)
Q Consensus 729 ~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~ 808 (931)
.+.|+.|||++|++++.+ ..+++|++|+|++|+++ .+|. .+.+++|++|||++|++++.+|..
T Consensus 430 -----------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~ 492 (549)
T 2z81_A 430 -----------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGI 492 (549)
T ss_dssp -----------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTG
T ss_pred -----------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHH
Confidence 123589999999998753 57899999999999999 7887 578999999999999999999999
Q ss_pred ccCCCCCCeeeCCCccccccCCC
Q 002360 809 MSNLSFLNYLNLSNNNLNGEIPS 831 (931)
Q Consensus 809 l~~l~~L~~L~ls~N~l~g~ip~ 831 (931)
+..+++|+.|++++|+++|.+|.
T Consensus 493 ~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 493 FDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp GGGCTTCCEEECCSSCBCCCHHH
T ss_pred HhcCcccCEEEecCCCccCCCcc
Confidence 99999999999999999999884
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.6e-45 Score=427.73 Aligned_cols=493 Identities=18% Similarity=0.209 Sum_probs=306.6
Q ss_pred cEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCCCeEEc
Q 002360 96 VHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYI 175 (931)
Q Consensus 96 ~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~l 175 (931)
.+.|.+++.++ .+|..+. ++|++|+|++|.+++..|.+|.++++|++|++++|.+..
T Consensus 8 ~~c~~~~~~l~--~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~------------------- 64 (549)
T 2z81_A 8 GVCDGRSRSFT--SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT------------------- 64 (549)
T ss_dssp SEEECTTSCCS--SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-------------------
T ss_pred ceEECCCCccc--cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-------------------
Confidence 34566666666 3455443 567777777777776666666666666666666555433
Q ss_pred cCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcCCCccc
Q 002360 176 SFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFN 255 (931)
Q Consensus 176 ~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 255 (931)
.++..+.++++|++|++++|++.+..|..|+.+++|++|++++|.++
T Consensus 65 ---------------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 111 (549)
T 2z81_A 65 ---------------------------------IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111 (549)
T ss_dssp ---------------------------------ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCS
T ss_pred ---------------------------------cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccc
Confidence 23333444455555555555555444444555555555555555554
Q ss_pred cc-ccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEEcCCCcCCCcchh
Q 002360 256 SA-VLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISE 334 (931)
Q Consensus 256 ~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 334 (931)
+. .|..++.+++|++|++++|.+.+.++...+..+++|++|++++| .+.+..|..+..+++|+.|+++.|.+......
T Consensus 112 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 190 (549)
T 2z81_A 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 190 (549)
T ss_dssp SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSBSTTHHHH
T ss_pred ccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC-cccccChhhhhccccCceEecccCcccccchh
Confidence 42 34455566666666666665444555444666666666666666 66666666666677777777766665432222
Q ss_pred hhhhcccccccCccEEEcCCccccccc--c-cccCCCCCCCEEeccCCcCCcCccc----cccCCCCCCEEEccCCcCCC
Q 002360 335 ILGIFSGCVAYELESLYLRGCQIFGHL--T-NQLGQFKRLNFLGLSNNQMDGSIPL----SLGQMANLESLDLSNNKLNG 407 (931)
Q Consensus 335 ~~~~~~~~~~~~L~~L~L~~n~l~~~~--~-~~l~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~ 407 (931)
.+..+ ++|++|++++|++.+.. + .....+++|+.|++++|.+.+..+. .+..+++|+.+++++|.+.+
T Consensus 191 ~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 191 FADIL-----SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp HHHST-----TTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred hHhhc-----ccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 22233 66777777777766532 1 1123456666777766666543332 23445666666666665543
Q ss_pred ccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHH
Q 002360 408 TVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFW 487 (931)
Q Consensus 408 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~ 487 (931)
.... +. .....+..+++|+.|++.++.+..... +
T Consensus 266 ~~~~------~~-------------------------------------~~~~~~~~l~~L~~L~l~~~~i~~~~~---~ 299 (549)
T 2z81_A 266 LGDF------NP-------------------------------------SESDVVSELGKVETVTIRRLHIPQFYL---F 299 (549)
T ss_dssp CSCC------CC-------------------------------------CTTTCCCCCTTCCEEEEESCBCSCGGG---S
T ss_pred cccc------cc-------------------------------------cchhhhhhhcccccccccccccchhhh---c
Confidence 2100 00 000111223444445444444321100 0
Q ss_pred hccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccc
Q 002360 488 NSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEG 567 (931)
Q Consensus 488 ~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 567 (931)
. .++... ...++|+.|++++|+++.
T Consensus 300 ~--------------------------------------------------~l~~~~----~~~~~L~~L~l~~n~l~~- 324 (549)
T 2z81_A 300 Y--------------------------------------------------DLSTVY----SLLEKVKRITVENSKVFL- 324 (549)
T ss_dssp C--------------------------------------------------CCCHHH----HHSTTCCEEEEESSCCCC-
T ss_pred c--------------------------------------------------cchhhh----hhcccceEEEeccCcccc-
Confidence 0 000000 013467777777777764
Q ss_pred cCCcc-cCCCCCCEEecCCCcceecCC---CcccCCCCCCEEEccCCcCccccc--hhhccCCCCcEEecCCCcccccCc
Q 002360 568 IPDCW-MNWPRLRTLNLGNNNFTGSLP---MSIGTLTSLRSLNLRNNRLSGVIP--TSFKNFSILEALDVGENELVGSIP 641 (931)
Q Consensus 568 ~~~~~-~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p 641 (931)
+|..+ ..+++|++|++++|++++.+| ..+..+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|
T Consensus 325 ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 403 (549)
T 2z81_A 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMP 403 (549)
T ss_dssp CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCC
T ss_pred CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCC
Confidence 44444 467788888888888876553 346677888888888888876543 45778888888888888887 677
Q ss_pred hhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCcc
Q 002360 642 TWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKI 721 (931)
Q Consensus 642 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~ 721 (931)
..+. .+++|++|++++|++++ +|..+ .++|+.|++++|++++.+ .++
T Consensus 404 ~~~~-~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l------------------------- 450 (549)
T 2z81_A 404 DSCQ-WPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFL------------------------- 450 (549)
T ss_dssp SCCC-CCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCC-------------------------
T ss_pred hhhc-ccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccC-------------------------
Confidence 7665 67888888888888873 44433 368999999999988643 222
Q ss_pred ccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcC
Q 002360 722 VEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQL 801 (931)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l 801 (931)
+.|+.|||++|+++ .+|. ...+++|++|+|++|++++.+|..++.+++|+.|++++|++
T Consensus 451 -------------------~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 451 -------------------PRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp -------------------TTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred -------------------ChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence 33488999999998 6776 57799999999999999999998899999999999999999
Q ss_pred cccCc
Q 002360 802 SGQIP 806 (931)
Q Consensus 802 ~~~~p 806 (931)
++..|
T Consensus 510 ~~~~~ 514 (549)
T 2z81_A 510 DCSCP 514 (549)
T ss_dssp CCCHH
T ss_pred cCCCc
Confidence 98877
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.5e-44 Score=430.23 Aligned_cols=528 Identities=23% Similarity=0.237 Sum_probs=339.1
Q ss_pred eecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccc
Q 002360 84 KINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISW 163 (931)
Q Consensus 84 ~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~ 163 (931)
.+|..+ -+.+++|||++|.|+.+ .+..|.++++|++|+|++|.+++..|.+|.+|++|++|+|++|.++.++...
T Consensus 45 ~vP~~l--p~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~-- 119 (635)
T 4g8a_A 45 KIPDNL--PFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA-- 119 (635)
T ss_dssp SCCSSS--CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG--
T ss_pred ccCCCC--CcCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH--
Confidence 355544 24788999999999865 3568999999999999999998777788999999999999988877666533
Q ss_pred cCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCC-CCcccccCCC
Q 002360 164 LSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQG-QIPSRLGNLT 242 (931)
Q Consensus 164 l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~ 242 (931)
|.++++|++|++++|+++++++..|+++++|++|++++|.+.+ ..|..++.++
T Consensus 120 --------------------------f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~ 173 (635)
T 4g8a_A 120 --------------------------FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 173 (635)
T ss_dssp --------------------------GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred --------------------------hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccch
Confidence 4456666666666666666666667777777777777777764 3466677777
Q ss_pred CCCEEEcCCCcccccccccccCCCC----CCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCC
Q 002360 243 SLKHLDLYSNQFNSAVLGWLSKLND----LEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKL 318 (931)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~l~~l~~----L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 318 (931)
+|++|++++|++++..+..+..+.+ ...++++.|.+.. ++.. ......++.+++..|.......+..+..+..+
T Consensus 174 ~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~-i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l 251 (635)
T 4g8a_A 174 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL 251 (635)
T ss_dssp TCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE-ECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTC
T ss_pred hhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccc-cCcc-cccchhhhhhhhhcccccccccchhhcCCccc
Confidence 7777777777777776666654433 3356677776653 3333 23334455666666522222233344455555
Q ss_pred cEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCc---CccccccCCCCC
Q 002360 319 TSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDG---SIPLSLGQMANL 395 (931)
Q Consensus 319 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~---~~p~~~~~l~~L 395 (931)
+...+..+..... ..+.......+..+..+...++..+.... ..+..+..+.++
T Consensus 252 ~~~~l~~~~~~~~-----------------------~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 308 (635)
T 4g8a_A 252 EVHRLVLGEFRNE-----------------------GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNV 308 (635)
T ss_dssp EEEEEEEECCTTS-----------------------CCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTC
T ss_pred ccccccccccccc-----------------------cccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccc
Confidence 5444322211100 00111111122233334444433332221 122234556667
Q ss_pred CEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCC
Q 002360 396 ESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISS 475 (931)
Q Consensus 396 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~ 475 (931)
+.+++.++.+....+ +. ....++.|++++
T Consensus 309 ~~l~~~~~~~~~~~~---~~------------------------------------------------~~~~L~~L~l~~ 337 (635)
T 4g8a_A 309 SSFSLVSVTIERVKD---FS------------------------------------------------YNFGWQHLELVN 337 (635)
T ss_dssp SEEEEESCEEEECGG---GG------------------------------------------------SCCCCSEEEEES
T ss_pred ccccccccccccccc---cc------------------------------------------------cchhhhhhhccc
Confidence 777776666542111 11 112233333333
Q ss_pred CCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCcc
Q 002360 476 TRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIE 555 (931)
Q Consensus 476 n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~ 555 (931)
|.+....+. ....|+
T Consensus 338 ~~~~~~~~~-----------------------------------------------------------------~l~~L~ 352 (635)
T 4g8a_A 338 CKFGQFPTL-----------------------------------------------------------------KLKSLK 352 (635)
T ss_dssp CEESSCCCC-----------------------------------------------------------------BCTTCC
T ss_pred ccccCcCcc-----------------------------------------------------------------cchhhh
Confidence 322211110 012344
Q ss_pred EEECcCCccccccCCcccCCCCCCEEecCCCcce--ecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCC
Q 002360 556 FLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFT--GSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGE 633 (931)
Q Consensus 556 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 633 (931)
.+++..|.+.... ....+++|+.|++++|.+. +..+..+..+.+|+++++..|.... .+..+..+++|+.+++++
T Consensus 353 ~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~ 429 (635)
T 4g8a_A 353 RLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH 429 (635)
T ss_dssp EEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTT
T ss_pred hcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhh
Confidence 4444444433221 1234556666666666553 2334445556667777777666653 344566677777777777
Q ss_pred CcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccc-cccCccccccccccccCCCCCCcccc
Q 002360 634 NELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLL-GTIPRCINNFSAMATADSSDQSSDIL 712 (931)
Q Consensus 634 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~~~~~~~~~~~~ 712 (931)
|......+...+..+++++.++++.|.+.+..+..+..+++|+.|++++|++. +..|..|..+++|
T Consensus 430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L------------- 496 (635)
T 4g8a_A 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL------------- 496 (635)
T ss_dssp SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-------------
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc-------------
Confidence 77665555555557788888888888888888888888888999999888754 4566666665555
Q ss_pred ccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCC
Q 002360 713 YAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE 792 (931)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 792 (931)
+.|||++|++++.+|..|+++++|++|+|++|+|++..|..|+.+++|+
T Consensus 497 -------------------------------~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 545 (635)
T 4g8a_A 497 -------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545 (635)
T ss_dssp -------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred -------------------------------CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence 7899999999988899999999999999999999988888999999999
Q ss_pred EEeccCCcCcccCcccccCC-CCCCeeeCCCccccccCC
Q 002360 793 SLDFSANQLSGQIPQSMSNL-SFLNYLNLSNNNLNGEIP 830 (931)
Q Consensus 793 ~LdLs~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip 830 (931)
+|||++|++++.+|..+..+ ++|++|++++|+++|.+.
T Consensus 546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 99999999999999999988 689999999999998764
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.9e-44 Score=417.60 Aligned_cols=469 Identities=19% Similarity=0.216 Sum_probs=272.8
Q ss_pred CEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcCCCcccccccccccCCCCCCEEeccCC
Q 002360 197 KELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDN 276 (931)
Q Consensus 197 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 276 (931)
++|++++|.++.+|... . ++|++|++++|.+.+..|..|..+++|++|++++|++++..|..|+.+++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~-~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDL-S--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSC-C--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcccccccc-c--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 57899999999877533 3 89999999999999887788999999999999999998888889999999999999999
Q ss_pred ccccccCccccCCCCCccEEEccCCCCCcc-cCCcccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCc
Q 002360 277 RLQGDISSLGLDNLTSIQKLLLSWNDELGG-KIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGC 355 (931)
Q Consensus 277 ~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n 355 (931)
.++ .+|.. .+++|++|++++| .+.+ .+|..++++++|++|++++|.+.+. .+..+ ++|
T Consensus 80 ~l~-~lp~~---~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l-----~~L-------- 138 (520)
T 2z7x_B 80 KLV-KISCH---PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPI-----AHL-------- 138 (520)
T ss_dssp CCC-EEECC---CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGG-----TTS--------
T ss_pred cee-ecCcc---ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCcccchh---hcccc-----ccc--------
Confidence 887 56654 7788888888888 6655 4667777777777777777666542 12222 333
Q ss_pred ccccccccccCCCCCCCEEeccCCcC--CcCccccccCCC-CCCEEEccCCcCCCccchhhhccccccceeccCCceeEE
Q 002360 356 QIFGHLTNQLGQFKRLNFLGLSNNQM--DGSIPLSLGQMA-NLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIF 432 (931)
Q Consensus 356 ~l~~~~~~~l~~l~~L~~L~L~~n~l--~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 432 (931)
+|++|++++|.+ .+..|..+..+. +...+++++|++.+.++...+..+++|+.++++.|....
T Consensus 139 --------------~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 204 (520)
T 2z7x_B 139 --------------NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204 (520)
T ss_dssp --------------CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTT
T ss_pred --------------eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccc
Confidence 114444444444 333443333332 122345555555544444444444444444443332000
Q ss_pred ecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHh--ccccceEEeccCcccccCCCCC
Q 002360 433 KINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWN--SIFQYYYLNVSGNQIYGGVPKF 510 (931)
Q Consensus 433 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~--~~~~L~~L~ls~n~l~~~~p~~ 510 (931)
.+. .+.+.+| .+..+++|+.|++++|.+++..+..+.. ..++|++|++++|.+.|.+|..
T Consensus 205 -------~~~----------~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 266 (520)
T 2z7x_B 205 -------KCS----------YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR 266 (520)
T ss_dssp -------TTH----------HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCC
T ss_pred -------ccc----------eeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccc
Confidence 000 0111112 3445566666666666555433222211 1124444555544444444321
Q ss_pred CCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccC-CcccCC---CCCCEEecCCC
Q 002360 511 DSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIP-DCWMNW---PRLRTLNLGNN 586 (931)
Q Consensus 511 ~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l---~~L~~L~Ls~n 586 (931)
... ...+.+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|
T Consensus 267 ~~~--------------------------------~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 267 DFD--------------------------------YSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp CCC--------------------------------CCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESS
T ss_pred hhh--------------------------------cccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCC
Confidence 100 0001234455555555554 122 222221 34555555555
Q ss_pred cceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccc--c
Q 002360 587 NFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHG--D 664 (931)
Q Consensus 587 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~--~ 664 (931)
.+.+.. .+..+++|++|++++|++++..|..+.. +++|++|++++|++++ .
T Consensus 313 ~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-------------------------l~~L~~L~L~~N~l~~l~~ 365 (520)
T 2z7x_B 313 RMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGH-------------------------LTELETLILQMNQLKELSK 365 (520)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCC-------------------------CSSCCEEECCSSCCCBHHH
T ss_pred cccccc--chhhCCcccEEEeECCccChhhhhhhcc-------------------------CCCCCEEEccCCccCcccc
Confidence 443211 0133444444444444444444444444 4455555555555543 2
Q ss_pred CCcccCCCCCcCEEEccCCccccccCcc-ccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccce
Q 002360 665 FPIQLCRLASLQILDVAYNSLLGTIPRC-INNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLV 743 (931)
Q Consensus 665 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 743 (931)
+|..+..+++|+.|++++|++++.+|.. +..++. |
T Consensus 366 ~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~--------------------------------------------L 401 (520)
T 2z7x_B 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS--------------------------------------------L 401 (520)
T ss_dssp HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT--------------------------------------------C
T ss_pred chHHHhhCCCCCEEECCCCcCCcccccchhccCcc--------------------------------------------C
Confidence 3444555666666666666666544432 333222 3
Q ss_pred eEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCccc-ccCCCCCCeeeCCC
Q 002360 744 RSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQS-MSNLSFLNYLNLSN 822 (931)
Q Consensus 744 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~-l~~l~~L~~L~ls~ 822 (931)
+.|++++|++++.+|..+. ++|++|+|++|+++ .+|..+..+++|++||+++|+++ .+|.. +..+++|++|++++
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcC
Confidence 6666666666666665554 67888888888887 77777778888888888888888 45554 78888888888888
Q ss_pred ccccccCC
Q 002360 823 NNLNGEIP 830 (931)
Q Consensus 823 N~l~g~ip 830 (931)
|+++|.++
T Consensus 478 N~~~c~c~ 485 (520)
T 2z7x_B 478 NPWDCSCP 485 (520)
T ss_dssp SCBCCCHH
T ss_pred CCCcccCC
Confidence 88888765
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-43 Score=412.03 Aligned_cols=448 Identities=20% Similarity=0.231 Sum_probs=268.4
Q ss_pred eecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccc
Q 002360 84 KINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISW 163 (931)
Q Consensus 84 ~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~ 163 (931)
.+|..+. ++|++|+|++|.+++. .|..|..+++|++|+|++|.+++..|.+|+++++|++|+|++|.++.+|..
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--- 87 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--- 87 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---
T ss_pred ccccccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---
Confidence 3555444 5666666666666654 345666666666666666666655566666666666666666655544332
Q ss_pred cCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCC-CccccCCCCCCCEEEccCCcCCCCCcccccCCC
Q 002360 164 LSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHF-PLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLT 242 (931)
Q Consensus 164 l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 242 (931)
.+++|++|++++|.+.++ .|..++++++|++|++++|.+.+ ..+..++
T Consensus 88 ----------------------------~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~ 136 (520)
T 2z7x_B 88 ----------------------------PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIA 136 (520)
T ss_dssp ----------------------------CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGT
T ss_pred ----------------------------ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccc
Confidence 345555555555555553 23456666666666666666653 2345555
Q ss_pred CC--CEEEcCCCcc--cccccccccCCC-CCCEEeccCCccccccCccccCCCCCccEEEccCCCC-------CcccCCc
Q 002360 243 SL--KHLDLYSNQF--NSAVLGWLSKLN-DLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDE-------LGGKIPT 310 (931)
Q Consensus 243 ~L--~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~-------~~~~~~~ 310 (931)
+| ++|++++|.+ .+..|..+..+. ....+++++|.+.+.++...+..+++|+.|++++| . +.+.++
T Consensus 137 ~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~- 214 (520)
T 2z7x_B 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV-LEDNKCSYFLSILA- 214 (520)
T ss_dssp TSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEEC-CSTTTTHHHHHHHH-
T ss_pred cceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccc-ccccccceeecchh-
Confidence 55 6666666666 555555555443 23345666666666666665667777777777766 2 222222
Q ss_pred ccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCccccccccccc---CCCCCCCEEeccCCcCCcCccc
Q 002360 311 SFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQL---GQFKRLNFLGLSNNQMDGSIPL 387 (931)
Q Consensus 311 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~p~ 387 (931)
.+..+++ |+.|++++|.+.+..+..+ ...++|++|++++|.+.+.+|.
T Consensus 215 ~l~~l~~-----------------------------L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 265 (520)
T 2z7x_B 215 KLQTNPK-----------------------------LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF 265 (520)
T ss_dssp GGGGCTT-----------------------------CCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCC
T ss_pred hhccccc-----------------------------hhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcccc
Confidence 3444444 4444444444433211111 0135677777777777777776
Q ss_pred cc-----cCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhh
Q 002360 388 SL-----GQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWL 462 (931)
Q Consensus 388 ~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~ 462 (931)
.+ +.+++|+.+++++|.+ .+|...+..+
T Consensus 266 ~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~--------------------------------------------- 298 (520)
T 2z7x_B 266 RDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEI--------------------------------------------- 298 (520)
T ss_dssp CCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHH---------------------------------------------
T ss_pred chhhcccccCceeEeccccccce--ecchhhhhcc---------------------------------------------
Confidence 66 7778888888887776 3332111100
Q ss_pred hccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccch
Q 002360 463 QLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFH 542 (931)
Q Consensus 463 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~ 542 (931)
....
T Consensus 299 ~~~~---------------------------------------------------------------------------- 302 (520)
T 2z7x_B 299 FSNM---------------------------------------------------------------------------- 302 (520)
T ss_dssp HHTC----------------------------------------------------------------------------
T ss_pred cccC----------------------------------------------------------------------------
Confidence 0001
Q ss_pred hhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCcc--ccchhh
Q 002360 543 LICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSG--VIPTSF 620 (931)
Q Consensus 543 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~ 620 (931)
+|+.|++++|.+.+.. .+..+++|++|++++|++++..|..+..+++|++|++++|++++ .+|..+
T Consensus 303 ----------~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 370 (520)
T 2z7x_B 303 ----------NIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370 (520)
T ss_dssp ----------CCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH
T ss_pred ----------ceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH
Confidence 2333333333332211 11345666677777777766666677777777777777777775 345566
Q ss_pred ccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCcccccccccc
Q 002360 621 KNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMA 700 (931)
Q Consensus 621 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 700 (931)
..+++|++|++++|++.+.+|... +..+++|+.|++++|++++.+|..+. +
T Consensus 371 ~~l~~L~~L~Ls~N~l~~~l~~~~------------------------~~~l~~L~~L~Ls~N~l~~~~~~~l~--~--- 421 (520)
T 2z7x_B 371 TQMKSLQQLDISQNSVSYDEKKGD------------------------CSWTKSLLSLNMSSNILTDTIFRCLP--P--- 421 (520)
T ss_dssp TTCTTCCEEECCSSCCBCCGGGCS------------------------CCCCTTCCEEECCSSCCCGGGGGSCC--T---
T ss_pred hhCCCCCEEECCCCcCCcccccch------------------------hccCccCCEEECcCCCCCcchhhhhc--c---
Confidence 666777777777776664455432 33455566666666666555444331 1
Q ss_pred ccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCccc
Q 002360 701 TADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGR 780 (931)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 780 (931)
.|+.|||++|+++ .+|..+..+++|++|+|++|+++ .
T Consensus 422 -----------------------------------------~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~ 458 (520)
T 2z7x_B 422 -----------------------------------------RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-S 458 (520)
T ss_dssp -----------------------------------------TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-C
T ss_pred -----------------------------------------cCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-c
Confidence 2367777777777 77887888999999999999999 5
Q ss_pred CCcC-ccCcCCCCEEeccCCcCcccCc
Q 002360 781 IPDN-IGVMRSIESLDFSANQLSGQIP 806 (931)
Q Consensus 781 ip~~-l~~l~~L~~LdLs~N~l~~~~p 806 (931)
+|.. +..+++|++|++++|++++..+
T Consensus 459 l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 459 VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCHHHhccCCcccEEECcCCCCcccCC
Confidence 6665 8899999999999999998654
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3e-43 Score=421.41 Aligned_cols=439 Identities=20% Similarity=0.286 Sum_probs=291.1
Q ss_pred CCCCEEEccCCcCCCCCcccccCCCCCCEEEc-CCCcccccccccccCC-CCCCEEec---------------cCCcccc
Q 002360 218 SSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDL-YSNQFNSAVLGWLSKL-NDLEVLSL---------------EDNRLQG 280 (931)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~l~~l-~~L~~L~L---------------~~n~l~~ 280 (931)
.+++.|+|+++.+.|.+|++++++++|++|+| ++|.+.+..+-..... ..+....+ ....+.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 45777777777777777777777777777777 6666655422110000 00000000 0000000
Q ss_pred ----------ccCccccCCCCCccEEEccC--CCCCcccCCcccCCCCCCcEEEcCCCcCCC-----------------c
Q 002360 281 ----------DISSLGLDNLTSIQKLLLSW--NDELGGKIPTSFGKLCKLTSFSMASTKLSQ-----------------D 331 (931)
Q Consensus 281 ----------~~~~~~l~~l~~L~~L~L~~--n~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-----------------~ 331 (931)
............++.+.+.. | .+++ +|..++++++|+.|++++|.+++ .
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N-~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSC-EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccC-cccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 00000012223344444443 4 5666 78888888888888888888887 3
Q ss_pred chhhhh--hcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCc-CCc-CccccccCCC-------CCCEEEc
Q 002360 332 ISEILG--IFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQ-MDG-SIPLSLGQMA-------NLESLDL 400 (931)
Q Consensus 332 ~~~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~l~-------~L~~L~L 400 (931)
+|..++ .+ ++|++|++++|.+.+.+|..++++++|++|++++|. +.+ .+|..++.++ +|++|++
T Consensus 481 iP~~l~f~~L-----~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~L 555 (876)
T 4ecn_A 481 ENEELSWSNL-----KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555 (876)
T ss_dssp TTSCCCGGGC-----TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEEC
T ss_pred CChhhhhccC-----CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEe
Confidence 676655 66 889999999999989999999999999999999998 887 7887666554 8999999
Q ss_pred cCCcCCCccch-hhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCC
Q 002360 401 SNNKLNGTVSE-IHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRIS 479 (931)
Q Consensus 401 ~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~ 479 (931)
++|+++ .+|. . .+..+++|+.|++++|+++
T Consensus 556 s~N~L~-~ip~~~------------------------------------------------~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 556 GYNNLE-EFPASA------------------------------------------------SLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp CSSCCC-BCCCHH------------------------------------------------HHTTCTTCCEEECTTSCCC
T ss_pred eCCcCC-ccCChh------------------------------------------------hhhcCCCCCEEECCCCCcc
Confidence 888876 4432 1 3444556666666666655
Q ss_pred CCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEEC
Q 002360 480 DKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKL 559 (931)
Q Consensus 480 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L 559 (931)
.+| .+ +.+++|+.|++
T Consensus 587 -~lp-~~--------------------------------------------------------------~~L~~L~~L~L 602 (876)
T 4ecn_A 587 -HLE-AF--------------------------------------------------------------GTNVKLTDLKL 602 (876)
T ss_dssp -BCC-CC--------------------------------------------------------------CTTSEESEEEC
T ss_pred -cch-hh--------------------------------------------------------------cCCCcceEEEC
Confidence 333 11 11344555555
Q ss_pred cCCccccccCCcccCCCC-CCEEecCCCcceecCCCcccCCCC--CCEEEccCCcCccccchhh---c--cCCCCcEEec
Q 002360 560 STNHFSEGIPDCWMNWPR-LRTLNLGNNNFTGSLPMSIGTLTS--LRSLNLRNNRLSGVIPTSF---K--NFSILEALDV 631 (931)
Q Consensus 560 s~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~p~~~~~l~~--L~~L~L~~n~l~~~~p~~~---~--~l~~L~~L~L 631 (931)
++|+++ .+|..+..+++ |+.|++++|+++ .+|..+..++. |+.|++++|++.+.+|... . .+++|+.|++
T Consensus 603 s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~L 680 (876)
T 4ecn_A 603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680 (876)
T ss_dssp CSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEEC
T ss_pred cCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEc
Confidence 555555 35555555665 666666666666 55555554433 6666666666665544221 1 2346777777
Q ss_pred CCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCC--------CCCcCEEEccCCccccccCcccc--ccccccc
Q 002360 632 GENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCR--------LASLQILDVAYNSLLGTIPRCIN--NFSAMAT 701 (931)
Q Consensus 632 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~ 701 (931)
++|+++ .+|..++..+++|+.|+|++|+++ .+|..+.. +++|+.|+|++|+++ .+|..+. .+++|
T Consensus 681 s~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L-- 755 (876)
T 4ecn_A 681 SYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL-- 755 (876)
T ss_dssp CSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC--
T ss_pred cCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc--
Confidence 777776 677776656777777777777777 45544332 237888888888887 6676654 44444
Q ss_pred cCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccC------C
Q 002360 702 ADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSH------N 775 (931)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~------N 775 (931)
+.|+|++|++++ +|..++.+++|+.|+|++ |
T Consensus 756 ------------------------------------------~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 756 ------------------------------------------SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGN 792 (876)
T ss_dssp ------------------------------------------CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCC
T ss_pred ------------------------------------------CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccc
Confidence 778888888886 788888888888888866 8
Q ss_pred cCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccC
Q 002360 776 LFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEI 829 (931)
Q Consensus 776 ~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i 829 (931)
++.+.+|..++.+++|+.|+|++|++ +.+|..+. ++|+.|||++|++...-
T Consensus 793 ~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred cccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence 89999999999999999999999999 78998876 69999999999987543
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.9e-43 Score=418.00 Aligned_cols=490 Identities=16% Similarity=0.177 Sum_probs=325.5
Q ss_pred CCCCEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEE
Q 002360 242 TSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSF 321 (931)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 321 (931)
.+++.|+|+++.+.+.+|..++.+++|++|+|++|.+...... ++.. .....+|... +..|+ +
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~--~~~~------------~~~~~~~~~~--~~~l~-l 143 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL--FGPK------------GISANMSDEQ--KQKMR-M 143 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCS--BSTT------------SBCTTCCHHH--HHHHH-T
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCcc--cccc------------ccccCchHHH--HHHHH-h
Confidence 4688888888888888888888888888888888865211100 1100 0000112111 22333 4
Q ss_pred EcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEecc--CCcCCcCccccccCCCCCCEEE
Q 002360 322 SMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLS--NNQMDGSIPLSLGQMANLESLD 399 (931)
Q Consensus 322 ~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~--~n~l~~~~p~~~~~l~~L~~L~ 399 (931)
+++.+.+.+.++..+.... ..+..+++....+.. .....++.+.+. .|.+++ +|..++++++|++|+
T Consensus 144 ~l~~~~l~~~~~~~~~~~~----~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~ 212 (636)
T 4eco_A 144 HYQKTFVDYDPREDFSDLI----KDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFY 212 (636)
T ss_dssp HHHHHHTCCCGGGGSCHHH----HHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEE
T ss_pred hHHHhhhccCchhhHHHHH----HHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEE
Confidence 4444444444443332110 112222222111110 011122222222 345555 565666666666666
Q ss_pred ccCCcCCCc-cchhhhccccccceeccCCceeEEecCCCCC--CCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCC
Q 002360 400 LSNNKLNGT-VSEIHFVNLTKLVSFLANANSLIFKINPNWV--PPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISST 476 (931)
Q Consensus 400 L~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n 476 (931)
|++|.+++. ++...... ..+......+..+. .+++|++|++++|.+.+.+|..+..+++|+.|++++|
T Consensus 213 Ls~n~l~~~~~~~~~~~~---------~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 213 MGNSPFVAENICEAWENE---------NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp EESCCCCGGGBSSSCSCT---------TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred CcCCcccccccccccccc---------ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 666666552 00000000 00000000111222 3445555666666666666777777788888888888
Q ss_pred C-CCC-CcchhHHhc-----cccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCC
Q 002360 477 R-ISD-KIPRAFWNS-----IFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGEN 549 (931)
Q Consensus 477 ~-i~~-~~~~~~~~~-----~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~ 549 (931)
+ +++ .+|..+..- +++|++|++++|.++ .+|.. ..++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~-----------------------------------~~l~ 327 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVE-----------------------------------TSLQ 327 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCH-----------------------------------HHHT
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCch-----------------------------------hhhc
Confidence 7 777 677666441 356666666666665 33320 0123
Q ss_pred CCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCC-CCEEEccCCcCccccchhhccCC--CC
Q 002360 550 FSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTS-LRSLNLRNNRLSGVIPTSFKNFS--IL 626 (931)
Q Consensus 550 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~L~~n~l~~~~p~~~~~l~--~L 626 (931)
.+++|+.|++++|+++|.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+..++ +|
T Consensus 328 ~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L 404 (636)
T 4eco_A 328 KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVM 404 (636)
T ss_dssp TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCE
T ss_pred cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCcc
Confidence 46789999999999998888 8888999999999999999 78888999999 999999999998 6787777655 89
Q ss_pred cEEecCCCcccccCchhHHh------hcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccc-cccc
Q 002360 627 EALDVGENELVGSIPTWIGE------RFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINN-FSAM 699 (931)
Q Consensus 627 ~~L~L~~N~l~~~~p~~~~~------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L 699 (931)
++|++++|++.+.+|..+.. .+++|++|++++|+++...+..+..+++|+.|+|++|+++ .+|..+.. ...
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~- 482 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE- 482 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE-
T ss_pred CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccc-
Confidence 99999999999888776541 3679999999999999544444567999999999999998 66654322 110
Q ss_pred cccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCcccc--CCCCCCEEEccCCcC
Q 002360 700 ATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVT--NLQGLQSLNLSHNLF 777 (931)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~--~l~~L~~L~Ls~N~l 777 (931)
....++.|+.|+|++|+++ .+|..+. .+++|++|+|++|++
T Consensus 483 ------------------------------------~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l 525 (636)
T 4eco_A 483 ------------------------------------NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSF 525 (636)
T ss_dssp ------------------------------------ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCC
T ss_pred ------------------------------------cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCC
Confidence 0011335699999999999 7898887 999999999999999
Q ss_pred cccCCcCccCcCCCCEEec------cCCcCcccCcccccCCCCCCeeeCCCccccccCCCCCccCcccccccCCCCCC
Q 002360 778 TGRIPDNIGVMRSIESLDF------SANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGNDLC 849 (931)
Q Consensus 778 ~~~ip~~l~~l~~L~~LdL------s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~l~ 849 (931)
++ +|..++.+++|+.|+| ++|++.+.+|..+..+++|++|++++|++ +.||.... ..+...++++|.+.
T Consensus 526 ~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 526 SK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNI 600 (636)
T ss_dssp SS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTC
T ss_pred CC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCc
Confidence 97 9999999999999999 56889999999999999999999999999 78897633 66777788888543
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.5e-40 Score=395.56 Aligned_cols=536 Identities=21% Similarity=0.197 Sum_probs=376.8
Q ss_pred EEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcCCC
Q 002360 173 LYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252 (931)
Q Consensus 173 L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 252 (931)
.+.++-+++.+|... .+++++|+|++|.++++++.+|.++++|++|+|++|++++..+.+|.++++|++|+|++|
T Consensus 36 ~~c~~~~l~~vP~~l-----p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 36 YQCMELNFYKIPDNL-----PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EECTTSCCSSCCSSS-----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EECCCCCcCccCCCC-----CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 344444555555421 247888888888888888888889999999999999988777778888999999999999
Q ss_pred cccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcc-cCCcccCCCCCCcEEEcCCCcCCCc
Q 002360 253 QFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGG-KIPTSFGKLCKLTSFSMASTKLSQD 331 (931)
Q Consensus 253 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~ 331 (931)
++++..+.+|.++++|++|++++|.++ .++...++++++|++|++++| .+.+ ..|..+..+++|++|++++|.+.+.
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcccccc
Confidence 988887888888999999999999887 455555888888888888888 5544 5677778888888888888888777
Q ss_pred chhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcC-ccccccCCCCCCEEEccCCcCCCccc
Q 002360 332 ISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGS-IPLSLGQMANLESLDLSNNKLNGTVS 410 (931)
Q Consensus 332 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~ 410 (931)
.+..+..+.... .....++++.|.+....+..+. ...++.+++.+|..... .+..+..++.++...+..+......
T Consensus 189 ~~~~l~~L~~l~-~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~- 265 (635)
T 4g8a_A 189 YCTDLRVLHQMP-LLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG- 265 (635)
T ss_dssp CGGGGHHHHTCT-TCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC-
T ss_pred ccccccchhhhh-hhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccccccccccc-
Confidence 666665542111 1234566666666544443332 23345555555543321 2223444455544444322211100
Q ss_pred hhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcc--hhHHh
Q 002360 411 EIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIP--RAFWN 488 (931)
Q Consensus 411 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~--~~~~~ 488 (931)
.+.......+.....+...++..+....... ...+.
T Consensus 266 ------------------------------------------~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 303 (635)
T 4g8a_A 266 ------------------------------------------NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFN 303 (635)
T ss_dssp ------------------------------------------CCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTG
T ss_pred ------------------------------------------ccccccccccccccchhhhhhhhhhhcccccchhhhhh
Confidence 0000111122222333333333222211110 01112
Q ss_pred ccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCcccccc
Q 002360 489 SIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGI 568 (931)
Q Consensus 489 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 568 (931)
....++.+++.++.+.. .. ......+++.|++.+|.+.+..
T Consensus 304 ~~~~l~~l~~~~~~~~~---------------------------------~~------~~~~~~~L~~L~l~~~~~~~~~ 344 (635)
T 4g8a_A 304 CLTNVSSFSLVSVTIER---------------------------------VK------DFSYNFGWQHLELVNCKFGQFP 344 (635)
T ss_dssp GGTTCSEEEEESCEEEE---------------------------------CG------GGGSCCCCSEEEEESCEESSCC
T ss_pred hhccccccccccccccc---------------------------------cc------ccccchhhhhhhcccccccCcC
Confidence 23344444444443321 11 0122467899999999987754
Q ss_pred CCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCcc--ccchhhccCCCCcEEecCCCcccccCchhHHh
Q 002360 569 PDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSG--VIPTSFKNFSILEALDVGENELVGSIPTWIGE 646 (931)
Q Consensus 569 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 646 (931)
+. .++.|+.+++.+|.+.... ....+++|+.|++++|.+.. ..+..+..+.+|+.+++..|...+ ++..+.
T Consensus 345 ~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~- 417 (635)
T 4g8a_A 345 TL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFL- 417 (635)
T ss_dssp CC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCT-
T ss_pred cc---cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cccccc-
Confidence 43 4567999999999887433 34578999999999999864 456677889999999999999874 444444
Q ss_pred hcCcCcEEEccCccccccCC-cccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccce
Q 002360 647 RFSRLMILILRSNKFHGDFP-IQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDT 725 (931)
Q Consensus 647 ~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (931)
.+++|+.++++.|+.....+ ..+..+++++.+++++|.+.+..|..+..++.+
T Consensus 418 ~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L-------------------------- 471 (635)
T 4g8a_A 418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-------------------------- 471 (635)
T ss_dssp TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC--------------------------
T ss_pred ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh--------------------------
Confidence 69999999999998876654 467889999999999999998888777666555
Q ss_pred eEEeecchhhhhhhccceeEEEcccCcc-cccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCccc
Q 002360 726 SLVMKGFLVEYNSILNLVRSIDISMNNF-SGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQ 804 (931)
Q Consensus 726 ~~~~~~~~~~~~~~~~~L~~LdLs~N~l-~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ 804 (931)
+.|+|++|++ .+.+|..|..+++|++|+|++|++++.+|..|+++++|++|+|++|+|++.
T Consensus 472 ------------------~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l 533 (635)
T 4g8a_A 472 ------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 533 (635)
T ss_dssp ------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBC
T ss_pred ------------------hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCC
Confidence 8899999985 456788999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCeeeCCCccccccCCCC-Ccc-CcccccccCCCCC-CC
Q 002360 805 IPQSMSNLSFLNYLNLSNNNLNGEIPSS-TQL-QSFDASSFAGNDL-CG 850 (931)
Q Consensus 805 ~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~-~~~~~~~~~~n~l-~~ 850 (931)
.|..|.++++|++||+++|++++.+|.. ..+ ..+...++++|++ |.
T Consensus 534 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 534 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred ChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 9999999999999999999999998865 223 4567778899954 53
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.7e-41 Score=395.66 Aligned_cols=471 Identities=21% Similarity=0.231 Sum_probs=254.9
Q ss_pred CCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcCCCcccccccccccCCCCCCEEec
Q 002360 194 HSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSL 273 (931)
Q Consensus 194 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 273 (931)
...+++++++|.++++|.... ++|++|++++|.+.+..+..|+.+++|++|++++|++++..|..|..+++|++|++
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCCCccCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 344677777777776664322 67777777777777666677777777777777777777777777777777777777
Q ss_pred cCCccccccCccccCCCCCccEEEccCCCCCcc-cCCcccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEc
Q 002360 274 EDNRLQGDISSLGLDNLTSIQKLLLSWNDELGG-KIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYL 352 (931)
Q Consensus 274 ~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L 352 (931)
++|.++ .+|.. .+++|++|++++| .+.+ ..|..++++++|++|++++|.+.+. .+..+ ++|
T Consensus 108 s~N~l~-~lp~~---~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l-----~~L----- 169 (562)
T 3a79_B 108 SHNRLQ-NISCC---PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPV-----AHL----- 169 (562)
T ss_dssp TTSCCC-EECSC---CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGG-----TTS-----
T ss_pred CCCcCC-ccCcc---ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccccC---chhhh-----hhc-----
Confidence 777776 55553 6777777777777 5554 3456666666666666666665431 11111 222
Q ss_pred CCcccccccccccCCCCCCCEEeccCCcC--CcCccccccCCC-CCCEEEccCCcCCCccchhhhccccccceeccCCce
Q 002360 353 RGCQIFGHLTNQLGQFKRLNFLGLSNNQM--DGSIPLSLGQMA-NLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANS 429 (931)
Q Consensus 353 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l--~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 429 (931)
+|++|++++|.+ .+..|..+..+. ..-.+++++|.+.+.++...+..+++|+.++++.|.
T Consensus 170 -----------------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 232 (562)
T 3a79_B 170 -----------------HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232 (562)
T ss_dssp -----------------CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCS
T ss_pred -----------------eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccc
Confidence 124444444444 334444443332 011334455555444443333333333333333221
Q ss_pred eEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHh--ccccceEEeccCcccccCC
Q 002360 430 LIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWN--SIFQYYYLNVSGNQIYGGV 507 (931)
Q Consensus 430 l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~--~~~~L~~L~ls~n~l~~~~ 507 (931)
... .........+..++.|+.++++++.+.+........ ..++|++|++++|.++|.+
T Consensus 233 ~~~--------------------~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i 292 (562)
T 3a79_B 233 ENC--------------------QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI 292 (562)
T ss_dssp TTH--------------------HHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCC
T ss_pred ccc--------------------chHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccc
Confidence 000 000011122344455555555555443321111110 1124555555555554444
Q ss_pred CCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccC-CcccC---CCCCCEEec
Q 002360 508 PKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIP-DCWMN---WPRLRTLNL 583 (931)
Q Consensus 508 p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~---l~~L~~L~L 583 (931)
|..... .....++.|+.++++.+.+ .+| ..+.. ..+|+.|++
T Consensus 293 p~~~~~--------------------------------~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 293 DREEFT--------------------------------YSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp CCCCCC--------------------------------CCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEE
T ss_pred cchhhh--------------------------------cccccchheehhhccccee--ecChhhhhhhhccCcceEEEc
Confidence 421100 0001123333333333333 122 11111 123555555
Q ss_pred CCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccc
Q 002360 584 GNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHG 663 (931)
Q Consensus 584 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~ 663 (931)
++|.+.... ....+++|++|++++|++++..|..+.+ +++|++|++++|++++
T Consensus 339 ~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------l~~L~~L~L~~N~l~~ 391 (562)
T 3a79_B 339 SDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCST-------------------------LKRLQTLILQRNGLKN 391 (562)
T ss_dssp ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCS-------------------------CSSCCEEECCSSCCCB
T ss_pred cCCCccccc--CccCCCCceEEECCCCccccchhhhhcc-------------------------cCCCCEEECCCCCcCC
Confidence 555443111 0133444444444444444444444444 4555555555555543
Q ss_pred c--CCcccCCCCCcCEEEccCCccccccCcc-ccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhc
Q 002360 664 D--FPIQLCRLASLQILDVAYNSLLGTIPRC-INNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSIL 740 (931)
Q Consensus 664 ~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (931)
. +|..+..+++|+.|++++|++++.+|.. +..+++
T Consensus 392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~------------------------------------------ 429 (562)
T 3a79_B 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES------------------------------------------ 429 (562)
T ss_dssp TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT------------------------------------------
T ss_pred cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc------------------------------------------
Confidence 2 2344566666777777777766544432 333333
Q ss_pred cceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCccc-ccCCCCCCeee
Q 002360 741 NLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQS-MSNLSFLNYLN 819 (931)
Q Consensus 741 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~-l~~l~~L~~L~ 819 (931)
|+.|++++|++++.+|..+. ++|++|+|++|+++ .+|..+..+++|++|||++|+++ .+|.. +..+++|++|+
T Consensus 430 --L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 430 --ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp --CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEE
T ss_pred --CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEE
Confidence 36677777777766665554 68888888888888 78877778888999999999988 45554 88889999999
Q ss_pred CCCccccccCCC
Q 002360 820 LSNNNLNGEIPS 831 (931)
Q Consensus 820 ls~N~l~g~ip~ 831 (931)
+++|+++|.+|.
T Consensus 504 l~~N~~~c~c~~ 515 (562)
T 3a79_B 504 LHDNPWDCTCPG 515 (562)
T ss_dssp CCSCCBCCCHHH
T ss_pred ecCCCcCCCcch
Confidence 999999887764
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.5e-41 Score=392.40 Aligned_cols=463 Identities=24% Similarity=0.282 Sum_probs=268.7
Q ss_pred EEEEcCCCCCCCchhhhcccccceeecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccC
Q 002360 60 LELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLG 139 (931)
Q Consensus 60 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~ 139 (931)
++++++++ .+. .+|..+. ++|++|++++|.+++. .|..|.++++|++|+|++|.+++..|.+|.
T Consensus 34 ~~l~ls~~------------~L~-~ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 97 (562)
T 3a79_B 34 SMVDYSNR------------NLT-HVPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFL 97 (562)
T ss_dssp CEEECTTS------------CCC-SCCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTT
T ss_pred cEEEcCCC------------CCc-cCCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhC
Confidence 66677664 333 3555443 6677777777777654 356677777777777777777766666677
Q ss_pred CCCCCCEEEccCCcccccccCccccCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCC-ccccCCCC
Q 002360 140 NLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFP-LLSSANFS 218 (931)
Q Consensus 140 ~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~ 218 (931)
++++|++|+|++|.++.+|.. .+++|++|++++|.+.+++ +..+.+++
T Consensus 98 ~l~~L~~L~Ls~N~l~~lp~~-------------------------------~l~~L~~L~Ls~N~l~~l~~p~~~~~l~ 146 (562)
T 3a79_B 98 FNQDLEYLDVSHNRLQNISCC-------------------------------PMASLRHLDLSFNDFDVLPVCKEFGNLT 146 (562)
T ss_dssp TCTTCCEEECTTSCCCEECSC-------------------------------CCTTCSEEECCSSCCSBCCCCGGGGGCT
T ss_pred CCCCCCEEECCCCcCCccCcc-------------------------------ccccCCEEECCCCCccccCchHhhcccC
Confidence 777777777777666554432 3445555555555555543 34566666
Q ss_pred CCCEEEccCCcCCCCCcccccCCCCC--CEEEcCCCcc--cccccccccCCC--CCCEEeccCCccccccCccccCCCCC
Q 002360 219 SLTTLDLSGNQFQGQIPSRLGNLTSL--KHLDLYSNQF--NSAVLGWLSKLN--DLEVLSLEDNRLQGDISSLGLDNLTS 292 (931)
Q Consensus 219 ~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~l~~l~~ 292 (931)
+|++|++++|++.+. .+..+++| ++|++++|.+ ++..|..+..+. .+ .+++++|.+.+.++...+..+++
T Consensus 147 ~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~ 222 (562)
T 3a79_B 147 KLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGH 222 (562)
T ss_dssp TCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEE
T ss_pred cccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccce
Confidence 666666666666542 23333333 6677776666 555566555543 22 44666777666666655667777
Q ss_pred ccEEEccCCCCCcc---cCCcccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCC
Q 002360 293 IQKLLLSWNDELGG---KIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFK 369 (931)
Q Consensus 293 L~~L~L~~n~~~~~---~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 369 (931)
|+.+++++|..... .....+..+++|+.+++..+.+.+.. +.+.. ..+ ..+
T Consensus 223 L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~------------------------~~~~~-~~~-~~~ 276 (562)
T 3a79_B 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC------------------------SVKLF-QFF-WPR 276 (562)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH------------------------HHHHH-HHH-TTS
T ss_pred EEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH------------------------HHHHH-Hhh-hcc
Confidence 77777777621111 11122334444444444333332211 11111 111 234
Q ss_pred CCCEEeccCCcCCcCccccc-----cCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccc
Q 002360 370 RLNFLGLSNNQMDGSIPLSL-----GQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQL 444 (931)
Q Consensus 370 ~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 444 (931)
+|++|++++|.+.+.+|..+ ..++.|+.+++..+.+ .+|...+..
T Consensus 277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~---------------------------- 326 (562)
T 3a79_B 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYS---------------------------- 326 (562)
T ss_dssp SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHH----------------------------
T ss_pred cccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhh----------------------------
Confidence 77777777777777777655 4444444444444443 222111000
Q ss_pred cEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCc
Q 002360 445 TVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLL 524 (931)
Q Consensus 445 ~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~ 524 (931)
++.
T Consensus 327 -----------------------------------------~~~------------------------------------ 329 (562)
T 3a79_B 327 -----------------------------------------VFA------------------------------------ 329 (562)
T ss_dssp -----------------------------------------HHH------------------------------------
T ss_pred -----------------------------------------hhc------------------------------------
Confidence 000
Q ss_pred cccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCE
Q 002360 525 LGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRS 604 (931)
Q Consensus 525 ~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 604 (931)
..+|+.|++++|.+.... ....+++|++|++++|++++..|..+..+++|++
T Consensus 330 --------------------------~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 381 (562)
T 3a79_B 330 --------------------------EMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT 381 (562)
T ss_dssp --------------------------TCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCE
T ss_pred --------------------------cCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCE
Confidence 012333344444332211 1134566777777777777666667777777777
Q ss_pred EEccCCcCccc--cchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccC
Q 002360 605 LNLRNNRLSGV--IPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAY 682 (931)
Q Consensus 605 L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 682 (931)
|++++|++++. .|..+.++++|++|++++|++++.+|... +..+++|+.|++++
T Consensus 382 L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~------------------------~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 382 LILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT------------------------CAWAESILVLNLSS 437 (562)
T ss_dssp EECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC------------------------CCCCTTCCEEECCS
T ss_pred EECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh------------------------hcCcccCCEEECCC
Confidence 77777777753 34556666666666666666664455432 33445555555555
Q ss_pred CccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCcccc
Q 002360 683 NSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVT 762 (931)
Q Consensus 683 N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~ 762 (931)
|++++.+|..+. + .|+.|+|++|+++ .+|..+.
T Consensus 438 n~l~~~~~~~l~--~--------------------------------------------~L~~L~L~~N~l~-~ip~~~~ 470 (562)
T 3a79_B 438 NMLTGSVFRCLP--P--------------------------------------------KVKVLDLHNNRIM-SIPKDVT 470 (562)
T ss_dssp SCCCGGGGSSCC--T--------------------------------------------TCSEEECCSSCCC-CCCTTTT
T ss_pred CCCCcchhhhhc--C--------------------------------------------cCCEEECCCCcCc-ccChhhc
Confidence 555544443321 1 2366777777776 6777777
Q ss_pred CCCCCCEEEccCCcCcccCCcC-ccCcCCCCEEeccCCcCcccCc
Q 002360 763 NLQGLQSLNLSHNLFTGRIPDN-IGVMRSIESLDFSANQLSGQIP 806 (931)
Q Consensus 763 ~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~LdLs~N~l~~~~p 806 (931)
.+++|++|+|++|+++ .+|.. ++.+++|+.|++++|++++..|
T Consensus 471 ~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 471 HLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp SSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 8999999999999999 56665 8999999999999999998765
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.3e-38 Score=359.47 Aligned_cols=62 Identities=8% Similarity=0.034 Sum_probs=31.4
Q ss_pred ccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCC
Q 002360 89 LLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGV 152 (931)
Q Consensus 89 l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n 152 (931)
-.+.++|++|++++|.+. .+|+.++++++|++|++++|.+.+.+|.+++++++|+++++++|
T Consensus 7 ~~~~~~L~~L~l~~n~l~--~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c 68 (454)
T 1jl5_A 7 NVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHH
T ss_pred ccccccchhhhcccCchh--hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhh
Confidence 345689999999999994 48999999999999999999999999999999998888777654
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3e-38 Score=360.64 Aligned_cols=372 Identities=17% Similarity=0.149 Sum_probs=243.7
Q ss_pred CCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEE
Q 002360 369 KRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLE 448 (931)
Q Consensus 369 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 448 (931)
++|++|++++|.+.+..|..+.++++|++|++++|.+.+.++...|.++++|++|++++|.+....+..+..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 45555555555555544555555555555555555555444444455555555555544444444444455555666666
Q ss_pred ccCCCCCCCcChh--hhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccc
Q 002360 449 LRSCHLGPRFPLW--LQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLG 526 (931)
Q Consensus 449 L~~~~l~~~~~~~--~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l 526 (931)
+++|.+.+..+.. +..+++|++|++++|++++..|..++..+++|++|++++|.+.+..|....
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-------------- 175 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL-------------- 175 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG--------------
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhh--------------
Confidence 6666665533333 666677777777777776666665555555555555555555443332100
Q ss_pred cEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEE
Q 002360 527 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLN 606 (931)
Q Consensus 527 ~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 606 (931)
. . ...+|+.|++++|.+.+..+..+.. .....+..+++|++|+
T Consensus 176 -------------------~-l-~~~~L~~L~l~~n~l~~~~~~~~~~----------------~~~~~~~~~~~L~~L~ 218 (455)
T 3v47_A 176 -------------------N-F-QGKHFTLLRLSSITLQDMNEYWLGW----------------EKCGNPFKNTSITTLD 218 (455)
T ss_dssp -------------------G-G-TTCEEEEEECTTCBCTTCSTTCTTH----------------HHHCCTTTTCEEEEEE
T ss_pred -------------------c-c-ccccccccccccCcccccchhhccc----------------cccccccccceeeeEe
Confidence 0 0 0134566666666655533322110 0000112334455555
Q ss_pred ccCCcCccccchhhccC---CCCcEEecCCCccccc----------CchhHH-hhcCcCcEEEccCccccccCCcccCCC
Q 002360 607 LRNNRLSGVIPTSFKNF---SILEALDVGENELVGS----------IPTWIG-ERFSRLMILILRSNKFHGDFPIQLCRL 672 (931)
Q Consensus 607 L~~n~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~----------~p~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l 672 (931)
+++|++++..|..+... ++|+.|++++|.+.+. .+..+. ...++|+.|++++|.+.+..|..+..+
T Consensus 219 Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 298 (455)
T 3v47_A 219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF 298 (455)
T ss_dssp CTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC
T ss_pred cCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccC
Confidence 55555544444444332 4455555554433221 111111 124789999999999999999999999
Q ss_pred CCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCc
Q 002360 673 ASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNN 752 (931)
Q Consensus 673 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~ 752 (931)
++|+.|+|++|++.+..|..|.++++| +.|+|++|+
T Consensus 299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------------------------------------~~L~Ls~N~ 334 (455)
T 3v47_A 299 TDLEQLTLAQNEINKIDDNAFWGLTHL--------------------------------------------LKLNLSQNF 334 (455)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTC--------------------------------------------CEEECCSSC
T ss_pred CCCCEEECCCCcccccChhHhcCcccC--------------------------------------------CEEECCCCc
Confidence 999999999999998888888776665 899999999
Q ss_pred ccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCCC
Q 002360 753 FSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS 832 (931)
Q Consensus 753 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 832 (931)
+++..|..++.+++|++|+|++|++++..|..|+.+++|++|++++|++++..+..+..+++|++|++++|+++|.+|..
T Consensus 335 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 99888999999999999999999999999999999999999999999999877778899999999999999999999965
Q ss_pred Ccc
Q 002360 833 TQL 835 (931)
Q Consensus 833 ~~~ 835 (931)
..+
T Consensus 415 ~~l 417 (455)
T 3v47_A 415 DYL 417 (455)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-36 Score=346.91 Aligned_cols=377 Identities=20% Similarity=0.167 Sum_probs=244.3
Q ss_pred CCCCEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEE
Q 002360 242 TSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSF 321 (931)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 321 (931)
++|++|++++|.+++..|..++++++|++|++++|.+.+.++...+..+++|++|++++| .+.+..|..+.++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEE
Confidence 345555555555544444555555555555555555544444433555555555555555 4555555555555555555
Q ss_pred EcCCCcCCCcchhh--hhhcccccccCccEEEcCCcccccccccc-cCCCCCCCEEeccCCcCCcCccccccCC--CCCC
Q 002360 322 SMASTKLSQDISEI--LGIFSGCVAYELESLYLRGCQIFGHLTNQ-LGQFKRLNFLGLSNNQMDGSIPLSLGQM--ANLE 396 (931)
Q Consensus 322 ~l~~~~l~~~~~~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l--~~L~ 396 (931)
++++|.+.+..+.. +..+ ++|++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+..+ ++|+
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPL-----TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTC-----TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred eCCCCCCCccccCcccccCc-----ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 55555555433332 3333 45555555555555544443 4555556666666555555555444443 4455
Q ss_pred EEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCC
Q 002360 397 SLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISST 476 (931)
Q Consensus 397 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n 476 (931)
.|++++|.+.+..+. .+.. .....+..+++|+.|++++|
T Consensus 184 ~L~l~~n~l~~~~~~-~~~~----------------------------------------~~~~~~~~~~~L~~L~Ls~n 222 (455)
T 3v47_A 184 LLRLSSITLQDMNEY-WLGW----------------------------------------EKCGNPFKNTSITTLDLSGN 222 (455)
T ss_dssp EEECTTCBCTTCSTT-CTTH----------------------------------------HHHCCTTTTCEEEEEECTTS
T ss_pred ccccccCcccccchh-hccc----------------------------------------cccccccccceeeeEecCCC
Confidence 555555555422111 0000 00001123456677777777
Q ss_pred CCCCCcchhHHhc--cccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCc
Q 002360 477 RISDKIPRAFWNS--IFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNI 554 (931)
Q Consensus 477 ~i~~~~~~~~~~~--~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L 554 (931)
++++..|..+... ..+++.|++++|...+...... .+.+.....+.. ...++|
T Consensus 223 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~--~~~~~L 277 (455)
T 3v47_A 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT-----------------------NFKDPDNFTFKG--LEASGV 277 (455)
T ss_dssp CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC-----------------------SSCCCCTTTTGG--GTTSCC
T ss_pred cccccchhhhhccccccceeeEeeccccccccccchh-----------------------hhccCccccccc--ccccCc
Confidence 7766666655543 2567777777776554322110 011000000000 013689
Q ss_pred cEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCC
Q 002360 555 EFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGEN 634 (931)
Q Consensus 555 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 634 (931)
+.|++++|++++..|..+..+++|++|++++|++++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 278 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS
T ss_pred eEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC
Confidence 99999999999999999999999999999999999988999999999999999999999998999999999999999999
Q ss_pred cccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCc
Q 002360 635 ELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPR 691 (931)
Q Consensus 635 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 691 (931)
++++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..|.
T Consensus 358 ~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 358 HIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 99977777776 799999999999999987777889999999999999999988873
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.1e-37 Score=335.25 Aligned_cols=225 Identities=31% Similarity=0.490 Sum_probs=154.2
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCcC--ccceEecCCC--CcEEEEEcCCCCCCCchhhhcccccce--
Q 002360 10 TSCIESEREALLKLKHDLRDPSHRLASWIGDNGDCCK--WGGVLCGNFT--GHVLELNLQNPFSPDDNEAYQRSMLVG-- 83 (931)
Q Consensus 10 ~~~~~~~~~~ll~~k~~~~d~~~~l~~w~~~~~~~c~--w~g~~c~~~~--~~v~~L~l~~~~~~~~~~~~~~~~~~~-- 83 (931)
+.|.++|++||++||+++.||. .+++|. .+++||. |.||+|+... ++|++|+++++ .+.+
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~~~-~l~~W~-~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~------------~l~~~~ 66 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGNPT-TLSSWL-PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL------------NLPKPY 66 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCG-GGTTCC-TTSCTTTTCSTTEEECCSSSCCCEEEEEEECC------------CCSSCE
T ss_pred CCCCHHHHHHHHHHHHhcCCcc-cccCCC-CCCCCCcCCCcceEeCCCCCCceEEEEECCCC------------CccCCc
Confidence 3699999999999999999886 789998 5779999 9999998644 89999999996 7777
Q ss_pred eecccccCccCCcEeeCCC-CCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCccc-ccccCc
Q 002360 84 KINPSLLELKHLVHLDLSG-NDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFE-LHAETI 161 (931)
Q Consensus 84 ~l~~~l~~l~~L~~L~Ls~-n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~-~~~~~~ 161 (931)
.+|..+.++++|++|++++ |.+.+. +|..|+++++|++|+|++|.+++.+|..|.++++|++|++++|.+. ..|.
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-- 143 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-- 143 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG--
T ss_pred ccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh--
Confidence 8888999999999999995 888775 7888999999999999999998888888888888888888877654 2222
Q ss_pred cccCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCC-CCCEEEccCCcCCCCCcccccC
Q 002360 162 SWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFS-SLTTLDLSGNQFQGQIPSRLGN 240 (931)
Q Consensus 162 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~ 240 (931)
.+..+++|++|++++|.+++..+..+..++ +|++|++++|++.+.+|..++.
T Consensus 144 ---------------------------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~ 196 (313)
T 1ogq_A 144 ---------------------------SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196 (313)
T ss_dssp ---------------------------GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred ---------------------------HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence 123344444444444444433333444443 4444444444444444444444
Q ss_pred CCCCCEEEcCCCcccccccccccCCCCCCEEeccCCccc
Q 002360 241 LTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQ 279 (931)
Q Consensus 241 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 279 (931)
++ |++|++++|.+++..|..+..+++|++|++++|.++
T Consensus 197 l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 43 444444444444444444444444444444444443
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2e-37 Score=349.82 Aligned_cols=198 Identities=29% Similarity=0.384 Sum_probs=105.9
Q ss_pred CCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEec
Q 002360 552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDV 631 (931)
Q Consensus 552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 631 (931)
++|++|++++|+++. +| .+..+++|++|++++|++++ +|.. +++|++|++++|++++ +|.. .++|+.|++
T Consensus 215 ~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l 284 (454)
T 1jl5_A 215 LSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDV 284 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred CcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEEC
Confidence 467777777777763 45 36777777777777777774 4432 3677777777777775 3332 366777777
Q ss_pred CCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCC-CCcCEEEccCCccccccCccccccccccccCCCCCCcc
Q 002360 632 GENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRL-ASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSD 710 (931)
Q Consensus 632 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 710 (931)
++|++++ +|. ..++|+.|++++|++++. + .+ ++|+.|++++|++++ +|..+
T Consensus 285 s~N~l~~-l~~----~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~~----------------- 336 (454)
T 1jl5_A 285 SENIFSG-LSE----LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPALP----------------- 336 (454)
T ss_dssp CSSCCSE-ESC----CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCCC-----------------
T ss_pred cCCccCc-ccC----cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-ccccC-----------------
Confidence 7777764 332 125677777777777642 2 22 467777777777764 44321
Q ss_pred ccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcc--cCCcCccCc
Q 002360 711 ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTG--RIPDNIGVM 788 (931)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~--~ip~~l~~l 788 (931)
+.|+.|++++|+++ .+|. .+++|++|++++|++++ .+|.+++.
T Consensus 337 ------------------------------~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~- 381 (454)
T 1jl5_A 337 ------------------------------PRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED- 381 (454)
T ss_dssp ------------------------------TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE-
T ss_pred ------------------------------CcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh-
Confidence 12366777777776 4555 35677777777777776 56665543
Q ss_pred CCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccc--cCCCC
Q 002360 789 RSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNG--EIPSS 832 (931)
Q Consensus 789 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g--~ip~~ 832 (931)
++.|.+.+.+|.. +++|++||+++|+++| .+|..
T Consensus 382 -------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 382 -------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp -------EECCC----------------------------------
T ss_pred -------hhhcccccccccc---cCcCCEEECCCCcCCccccchhh
Confidence 2345666666653 3788899999999988 77753
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=8.8e-35 Score=328.46 Aligned_cols=214 Identities=22% Similarity=0.185 Sum_probs=156.2
Q ss_pred ecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCcccc
Q 002360 85 INPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWL 164 (931)
Q Consensus 85 l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l 164 (931)
.+.++.++++|++|++++|.+++. | .++.+++|++|+|++|.+++ +| ++.+++|++|++++|.++.++ +
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~~--~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~~-----~ 102 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITDM--T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNLD-----V 102 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCCC--T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-----C
T ss_pred cccChhHcCCCCEEEccCCCcccC--h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCceee-----c
Confidence 344677889999999999999853 5 68899999999999999886 34 888999999999998887653 6
Q ss_pred CCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCC
Q 002360 165 SGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSL 244 (931)
Q Consensus 165 ~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 244 (931)
+++++|++|++++|+++.++ +..+++|++|++++|.+++++ ++++++|++|++++|...+.+ .++.+++|
T Consensus 103 ~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L 172 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQL 172 (457)
T ss_dssp TTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTC
T ss_pred CCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc--ccccCCcC
Confidence 77888888888888887753 567788888888888877753 667778888888888554444 36677788
Q ss_pred CEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEEcC
Q 002360 245 KHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMA 324 (931)
Q Consensus 245 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 324 (931)
++|++++|++++. | ++.+++|+.|++++|.+++. .+..+++|++|++++| .+.+ +| +..+++|+.|+++
T Consensus 173 ~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N-~l~~-ip--~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 173 TTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSN-KLTE-ID--VTPLTQLTYFDCS 241 (457)
T ss_dssp CEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSS-CCSC-CC--CTTCTTCSEEECC
T ss_pred CEEECCCCcccee-c--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCC-cccc-cC--ccccCCCCEEEee
Confidence 8888888877664 3 66777777777777777642 1566677777777766 5554 33 4455555555555
Q ss_pred CCcCCC
Q 002360 325 STKLSQ 330 (931)
Q Consensus 325 ~~~l~~ 330 (931)
+|.+++
T Consensus 242 ~N~l~~ 247 (457)
T 3bz5_A 242 VNPLTE 247 (457)
T ss_dssp SSCCSC
T ss_pred CCcCCC
Confidence 555444
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.2e-35 Score=332.03 Aligned_cols=213 Identities=20% Similarity=0.182 Sum_probs=119.1
Q ss_pred hhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCCCeEEccCcccCCCCchHHHh
Q 002360 111 PKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVI 190 (931)
Q Consensus 111 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~l 190 (931)
+..++++++|++|++++|.+++ +| .++.+++|++|++++|.++.++ +..+++|+
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~~-----~~~l~~L~------------------- 88 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTLD-----LSQNTNLT------------------- 88 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCCC-----CTTCTTCS-------------------
T ss_pred ccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeEc-----cccCCCCC-------------------
Confidence 4456777777777777777774 34 5777777777777777655442 33444444
Q ss_pred ccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcCCCcccccccccccCCCCCCE
Q 002360 191 NSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEV 270 (931)
Q Consensus 191 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 270 (931)
+|++++|.+++++ +.++++|++|++++|++++. + ++.+++|++|++++|++++. .++.+++|++
T Consensus 89 -------~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~ 152 (457)
T 3bz5_A 89 -------YLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTE 152 (457)
T ss_dssp -------EEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCE
T ss_pred -------EEECcCCCCceee---cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCE
Confidence 4444444444432 44455555555555555532 2 45555555555555555443 1445555555
Q ss_pred EeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEE
Q 002360 271 LSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESL 350 (931)
Q Consensus 271 L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L 350 (931)
|++++|...+.++ +..+++|++|++++| .+.+ +| +..+ ++|++|
T Consensus 153 L~l~~n~~~~~~~---~~~l~~L~~L~ls~n-~l~~-l~--l~~l-----------------------------~~L~~L 196 (457)
T 3bz5_A 153 LDCHLNKKITKLD---VTPQTQLTTLDCSFN-KITE-LD--VSQN-----------------------------KLLNRL 196 (457)
T ss_dssp EECTTCSCCCCCC---CTTCTTCCEEECCSS-CCCC-CC--CTTC-----------------------------TTCCEE
T ss_pred EECCCCCcccccc---cccCCcCCEEECCCC-ccce-ec--cccC-----------------------------CCCCEE
Confidence 5555554333331 444555555555555 3332 11 2222 445555
Q ss_pred EcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcCCC
Q 002360 351 YLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNG 407 (931)
Q Consensus 351 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 407 (931)
++++|++++. .++.+++|++|++++|.+.+ +| ++.+++|++|++++|++++
T Consensus 197 ~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 197 NCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp ECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred ECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 5555555443 25666777777777777775 44 6677777777777777764
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.9e-35 Score=317.66 Aligned_cols=258 Identities=32% Similarity=0.563 Sum_probs=243.9
Q ss_pred CCccEEECcCCcccc--ccCCcccCCCCCCEEecCC-CcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcE
Q 002360 552 KNIEFLKLSTNHFSE--GIPDCWMNWPRLRTLNLGN-NNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEA 628 (931)
Q Consensus 552 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 628 (931)
.+++.|++++|.+++ .+|..+.++++|++|++++ |.+.+.+|..|..+++|++|++++|.+++.+|..|..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999998 8999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred EecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCC-CcCEEEccCCccccccCccccccccccccCCCCC
Q 002360 629 LDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLA-SLQILDVAYNSLLGTIPRCINNFSAMATADSSDQ 707 (931)
Q Consensus 629 L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~ 707 (931)
|++++|.+++.+|..+. .+++|++|++++|++++.+|..+..++ .|+.|++++|++++.+|..+..++ |
T Consensus 130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L-------- 199 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L-------- 199 (313)
T ss_dssp EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence 99999999999999887 799999999999999999999999998 999999999999999998887654 4
Q ss_pred CccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccC
Q 002360 708 SSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV 787 (931)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~ 787 (931)
+.|++++|++++.+|..+..+++|++|+|++|++++.+|. +..
T Consensus 200 ------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~ 242 (313)
T 1ogq_A 200 ------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGL 242 (313)
T ss_dssp ------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCC
T ss_pred ------------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccc
Confidence 8999999999999999999999999999999999987777 889
Q ss_pred cCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCCCCccCcccccccCCC-CCCCCCCCCC
Q 002360 788 MRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGN-DLCGAPLSSC 856 (931)
Q Consensus 788 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~~~~c 856 (931)
+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|...++..+...++.+| .+||.|...|
T Consensus 243 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCCCC
Confidence 99999999999999999999999999999999999999999999988999999999999 6999887777
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=329.52 Aligned_cols=235 Identities=18% Similarity=0.177 Sum_probs=166.5
Q ss_pred CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360 551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD 630 (931)
Q Consensus 551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 630 (931)
+++|++|++++|++++..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|++++..+..+.++++|+.|+
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEE
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEe
Confidence 45677777777777766666777777777777777777766666777777777777777777766666677777777777
Q ss_pred cCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcc
Q 002360 631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSD 710 (931)
Q Consensus 631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 710 (931)
+++|.+.+..+..+ ..+++|+.|++++|.+.+.+|.......+|+.|++++|++++..+..+.+++.|
T Consensus 183 l~~n~i~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L----------- 250 (477)
T 2id5_A 183 LRHLNINAIRDYSF-KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL----------- 250 (477)
T ss_dssp EESCCCCEECTTCS-CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC-----------
T ss_pred CCCCcCcEeChhhc-ccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc-----------
Confidence 77777764333333 367777777777777666666666666677777777777764333444444443
Q ss_pred ccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCC
Q 002360 711 ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS 790 (931)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 790 (931)
+.|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++
T Consensus 251 ---------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (477)
T 2id5_A 251 ---------------------------------RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297 (477)
T ss_dssp ---------------------------------CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred ---------------------------------CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence 67777777777766677777777777777777777777777777777
Q ss_pred CCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCC
Q 002360 791 IESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIP 830 (931)
Q Consensus 791 L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 830 (931)
|+.|||++|++++..+..|..+++|++|++++|+++|.++
T Consensus 298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 7777777777777666677777777777777777776654
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.8e-33 Score=321.07 Aligned_cols=216 Identities=26% Similarity=0.395 Sum_probs=178.0
Q ss_pred CCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEE
Q 002360 550 FSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEAL 629 (931)
Q Consensus 550 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 629 (931)
.+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..| +..+++|++|++++|.+++. ..+..+++|+.|
T Consensus 175 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 248 (466)
T 1o6v_A 175 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDL 248 (466)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred cCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEE
Confidence 367788888888887764 347778888889998888886554 66788899999999988864 457888999999
Q ss_pred ecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCc
Q 002360 630 DVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSS 709 (931)
Q Consensus 630 ~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~ 709 (931)
++++|++.+..| + ..+++|++|++++|.+++..+ +..+++|+.|++++|++.+..| +..+++
T Consensus 249 ~l~~n~l~~~~~--~-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~----------- 310 (466)
T 1o6v_A 249 DLANNQISNLAP--L-SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN----------- 310 (466)
T ss_dssp ECCSSCCCCCGG--G-TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTT-----------
T ss_pred ECCCCccccchh--h-hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCC-----------
Confidence 999999885443 3 378999999999999986544 7889999999999999986543 444443
Q ss_pred cccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcC
Q 002360 710 DILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR 789 (931)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 789 (931)
|+.|+|++|++++..| +..+++|++|++++|++++. ..++.++
T Consensus 311 ---------------------------------L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~ 353 (466)
T 1o6v_A 311 ---------------------------------LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLT 353 (466)
T ss_dssp ---------------------------------CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred ---------------------------------CCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCC
Confidence 4899999999997766 78999999999999999964 4689999
Q ss_pred CCCEEeccCCcCcccCcccccCCCCCCeeeCCCcccccc
Q 002360 790 SIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE 828 (931)
Q Consensus 790 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 828 (931)
+|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 354 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 354 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp TCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 99999999999998887 89999999999999999984
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.7e-33 Score=316.26 Aligned_cols=192 Identities=23% Similarity=0.384 Sum_probs=138.4
Q ss_pred CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360 551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD 630 (931)
Q Consensus 551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 630 (931)
+++|+.|++++|.+++..+ +..+++|+.|++++|++++. ..+..+++|++|++++|.+++..+ +..+++|+.|+
T Consensus 198 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 271 (466)
T 1o6v_A 198 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 271 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred CCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEE
Confidence 4566666666666666444 55567777777777776642 346667777777777777776544 66777777777
Q ss_pred cCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcc
Q 002360 631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSD 710 (931)
Q Consensus 631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 710 (931)
+++|++++ ++. +. .+++|+.|++++|++.+..+ +..+++|+.|++++|++++..| +..+++
T Consensus 272 l~~n~l~~-~~~-~~-~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~------------ 332 (466)
T 1o6v_A 272 LGANQISN-ISP-LA-GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTK------------ 332 (466)
T ss_dssp CCSSCCCC-CGG-GT-TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTT------------
T ss_pred CCCCccCc-ccc-cc-CCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCcc------------
Confidence 77777774 333 33 67778888888887776544 6677888888888888876554 334333
Q ss_pred ccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCC
Q 002360 711 ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS 790 (931)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 790 (931)
|+.|++++|++++. ..+..+++|+.|++++|++++.+| +..+++
T Consensus 333 --------------------------------L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 376 (466)
T 1o6v_A 333 --------------------------------LQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTR 376 (466)
T ss_dssp --------------------------------CCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTT
T ss_pred --------------------------------CCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCC
Confidence 47888888888764 468888999999999999987776 788899
Q ss_pred CCEEeccCCcCcc
Q 002360 791 IESLDFSANQLSG 803 (931)
Q Consensus 791 L~~LdLs~N~l~~ 803 (931)
|+.|++++|++++
T Consensus 377 L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 377 ITQLGLNDQAWTN 389 (466)
T ss_dssp CCEEECCCEEEEC
T ss_pred CCEEeccCCcccC
Confidence 9999999999886
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-33 Score=320.77 Aligned_cols=348 Identities=18% Similarity=0.173 Sum_probs=248.6
Q ss_pred cEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCC
Q 002360 348 ESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANA 427 (931)
Q Consensus 348 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~ 427 (931)
+.++.++++++. +|..+ .++++.|++++|.+.+..+..|..+++|++|+|++|.+++..+. .|
T Consensus 14 ~~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~------------- 76 (477)
T 2id5_A 14 RAVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AF------------- 76 (477)
T ss_dssp TEEECCSCCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TT-------------
T ss_pred CEEEeCCCCcCc-CCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hh-------------
Confidence 466666666643 33333 24677777777777766666677777777777777766533222 22
Q ss_pred ceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCC
Q 002360 428 NSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGV 507 (931)
Q Consensus 428 n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 507 (931)
..+++|++|++++|.+....+..+..+++|++|++++|++.+..+..
T Consensus 77 -----------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~---------------------- 123 (477)
T 2id5_A 77 -----------NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM---------------------- 123 (477)
T ss_dssp -----------TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTT----------------------
T ss_pred -----------hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhH----------------------
Confidence 22333344444444444333334444445555555544443322211
Q ss_pred CCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCc
Q 002360 508 PKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNN 587 (931)
Q Consensus 508 p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 587 (931)
+..+++|+.|++++|.+++..+..|..+++|+.|++++|+
T Consensus 124 ----------------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 124 ----------------------------------------FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163 (477)
T ss_dssp ----------------------------------------TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred ----------------------------------------ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc
Confidence 1235778888888888888888888888899999999998
Q ss_pred ceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCc
Q 002360 588 FTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPI 667 (931)
Q Consensus 588 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~ 667 (931)
+++..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|+..+.+|...+ ...+|+.|++++|++++..+.
T Consensus 164 l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~ 242 (477)
T 2id5_A 164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYL 242 (477)
T ss_dssp CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHH
T ss_pred CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHH
Confidence 8866666788888999999999998888888888889999999999888888888776 466899999999998865556
Q ss_pred ccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEE
Q 002360 668 QLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSID 747 (931)
Q Consensus 668 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Ld 747 (931)
.+..+++|+.|+|++|++++..+..|.++++| +.|+
T Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------------------------------------~~L~ 278 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRL--------------------------------------------QEIQ 278 (477)
T ss_dssp HHTTCTTCCEEECCSSCCCEECTTSCTTCTTC--------------------------------------------CEEE
T ss_pred HhcCccccCeeECCCCcCCccChhhccccccC--------------------------------------------CEEE
Confidence 78889999999999999987777777666555 7899
Q ss_pred cccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccc
Q 002360 748 ISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNG 827 (931)
Q Consensus 748 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 827 (931)
|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++++.-+.. .-...+..+++.++...|
T Consensus 279 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C 357 (477)
T 2id5_A 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTC 357 (477)
T ss_dssp CCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBE
T ss_pred CCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH-hHHhhhhccccCccCcee
Confidence 9999999888999999999999999999999777778889999999999999998653321 112234445666676666
Q ss_pred cCCC
Q 002360 828 EIPS 831 (931)
Q Consensus 828 ~ip~ 831 (931)
.-|.
T Consensus 358 ~~p~ 361 (477)
T 2id5_A 358 ATPE 361 (477)
T ss_dssp EESG
T ss_pred CCch
Confidence 5553
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.4e-31 Score=298.17 Aligned_cols=267 Identities=21% Similarity=0.200 Sum_probs=149.9
Q ss_pred cCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCC
Q 002360 90 LELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSL 169 (931)
Q Consensus 90 ~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~ 169 (931)
..++++++|+++++.++.. -+..+..+++|++|+|++|.+.+..+.+|.++++|++|++++|.+..++... +.++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l-- 116 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV--FQNV-- 116 (390)
T ss_dssp GGGCCCSEEEEESCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTC--
T ss_pred cccCCceEEEecCCchhhC-ChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH--hcCC--
Confidence 4578999999999998854 2345789999999999999998777788999999999999998877665433 3444
Q ss_pred CCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEc
Q 002360 170 LEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDL 249 (931)
Q Consensus 170 L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 249 (931)
++|++|++++|.+..+++..+.++++|++|++++|.+.+..+..++.+++|++|++
T Consensus 117 ------------------------~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 117 ------------------------PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172 (390)
T ss_dssp ------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEEC
T ss_pred ------------------------CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEEC
Confidence 44444444455555444444555555555555555555444445555555555555
Q ss_pred CCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEEcCCCcCC
Q 002360 250 YSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLS 329 (931)
Q Consensus 250 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 329 (931)
++|++++.. +..+++|+.|++++|.+.+ +...++|++|++++| .+... |. ...++|+.|++++|.++
T Consensus 173 ~~n~l~~~~---~~~l~~L~~L~l~~n~l~~------~~~~~~L~~L~l~~n-~l~~~-~~--~~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 173 SSNRLTHVD---LSLIPSLFHANVSYNLLST------LAIPIAVEELDASHN-SINVV-RG--PVNVELTILKLQHNNLT 239 (390)
T ss_dssp CSSCCSBCC---GGGCTTCSEEECCSSCCSE------EECCSSCSEEECCSS-CCCEE-EC--CCCSSCCEEECCSSCCC
T ss_pred CCCcCCccc---cccccccceeecccccccc------cCCCCcceEEECCCC-eeeec-cc--cccccccEEECCCCCCc
Confidence 555554431 3344555555555555432 222334555555555 33222 11 11234444444444443
Q ss_pred CcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcCC
Q 002360 330 QDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLN 406 (931)
Q Consensus 330 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 406 (931)
+. ..+..+ ++|++|++++|.+.+..|..+..+++|++|++++|.+.+ +|..+..+++|++|++++|++.
T Consensus 240 ~~--~~l~~l-----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~ 308 (390)
T 3o6n_A 240 DT--AWLLNY-----PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 308 (390)
T ss_dssp CC--GGGGGC-----TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred cc--HHHcCC-----CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce
Confidence 32 122222 444555555554444444444445555555555554442 2333344445555555555443
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.6e-32 Score=301.47 Aligned_cols=332 Identities=19% Similarity=0.220 Sum_probs=231.2
Q ss_pred CCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEE
Q 002360 368 FKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVL 447 (931)
Q Consensus 368 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 447 (931)
+++++.|++++|.+....+..+..+++|++|++++|.+++ .....+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~-------------------------~~~~~~~~l~~L~~L 98 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-------------------------IDTYAFAYAHTIQKL 98 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCE-------------------------ECTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccc-------------------------cChhhccCCCCcCEE
Confidence 4566666666666654333335556666666666666542 222334444555556
Q ss_pred EccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCcccc
Q 002360 448 ELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGS 527 (931)
Q Consensus 448 ~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~ 527 (931)
++++|.+.+..|..+..+++|++|++++|+++.. |...+
T Consensus 99 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~---------------------------------------- 137 (390)
T 3o6n_A 99 YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIF---------------------------------------- 137 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTT----------------------------------------
T ss_pred ECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcC-CHHHh----------------------------------------
Confidence 6666666655566666666666666666665532 21111
Q ss_pred EEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEc
Q 002360 528 IFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNL 607 (931)
Q Consensus 528 ~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 607 (931)
..+++|++|++++|++++..+..|..+++|++|++++|++++. .+..+++|++|++
T Consensus 138 ---------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l 193 (390)
T 3o6n_A 138 ---------------------HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV 193 (390)
T ss_dssp ---------------------TTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEEC
T ss_pred ---------------------cCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeec
Confidence 2246777778888877777777788888888888888888754 2556778888888
Q ss_pred cCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCcccc
Q 002360 608 RNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLG 687 (931)
Q Consensus 608 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 687 (931)
++|.+++. ...++|+.|++++|.+. .+|.. ..++|+.|++++|.+++. ..+..+++|+.|++++|++++
T Consensus 194 ~~n~l~~~-----~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 194 SYNLLSTL-----AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK 262 (390)
T ss_dssp CSSCCSEE-----ECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE
T ss_pred cccccccc-----CCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC
Confidence 88887643 33467888888888887 44543 357888888888888754 467788889999999999888
Q ss_pred ccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCC
Q 002360 688 TIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGL 767 (931)
Q Consensus 688 ~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L 767 (931)
..|..+.++++| +.|+|++|++++ +|..+..+++|
T Consensus 263 ~~~~~~~~l~~L--------------------------------------------~~L~L~~n~l~~-~~~~~~~l~~L 297 (390)
T 3o6n_A 263 IMYHPFVKMQRL--------------------------------------------ERLYISNNRLVA-LNLYGQPIPTL 297 (390)
T ss_dssp EESGGGTTCSSC--------------------------------------------CEEECCSSCCCE-EECSSSCCTTC
T ss_pred cChhHccccccC--------------------------------------------CEEECCCCcCcc-cCcccCCCCCC
Confidence 878777766655 788999999884 56677889999
Q ss_pred CEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCCCCccCcccccccCCC-
Q 002360 768 QSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGN- 846 (931)
Q Consensus 768 ~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n- 846 (931)
++|+|++|+++ .+|..++.+++|+.|++++|+++.. | +..+++|++|++++|++++.... ..+..+....+.++
T Consensus 298 ~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~ 372 (390)
T 3o6n_A 298 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDAD 372 (390)
T ss_dssp CEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCC
T ss_pred CEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccC
Confidence 99999999998 6787888999999999999999854 3 67788999999999999885322 12333444444444
Q ss_pred CCCC
Q 002360 847 DLCG 850 (931)
Q Consensus 847 ~l~~ 850 (931)
..|.
T Consensus 373 ~~c~ 376 (390)
T 3o6n_A 373 QHCK 376 (390)
T ss_dssp SCCC
T ss_pred ceec
Confidence 4444
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.8e-32 Score=316.45 Aligned_cols=334 Identities=19% Similarity=0.206 Sum_probs=242.5
Q ss_pred CCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEE
Q 002360 368 FKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVL 447 (931)
Q Consensus 368 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 447 (931)
+.+++.+++++|.+....+..+..+++|++|++++|.+++ ..+..+..+++|+.|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-------------------------~~~~~~~~l~~L~~L 104 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-------------------------IDTYAFAYAHTIQKL 104 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-------------------------ECTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-------------------------CChHHhcCCCCCCEE
Confidence 3455666666666554444445555666666666665543 222233444455555
Q ss_pred EccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCcccc
Q 002360 448 ELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGS 527 (931)
Q Consensus 448 ~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~ 527 (931)
++++|.+.+..|..+..+++|+.|++++|.+++..+..+
T Consensus 105 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~----------------------------------------- 143 (597)
T 3oja_B 105 YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF----------------------------------------- 143 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-----------------------------------------
T ss_pred ECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHh-----------------------------------------
Confidence 555555555555555666666666666665553222111
Q ss_pred EEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEc
Q 002360 528 IFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNL 607 (931)
Q Consensus 528 ~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 607 (931)
+.+++|++|++++|.+++..|..|..+++|++|++++|.+++. .+..+++|+.|++
T Consensus 144 ---------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l 199 (597)
T 3oja_B 144 ---------------------HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV 199 (597)
T ss_dssp ---------------------TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEEC
T ss_pred ---------------------ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhhhhhhc
Confidence 2256788888888888887777888888888888888888854 2556788888999
Q ss_pred cCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCcccc
Q 002360 608 RNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLG 687 (931)
Q Consensus 608 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 687 (931)
++|.+++. ...++|+.|++++|.+. .+|..+ .++|+.|++++|.+++ +..+..+++|+.|+|++|.+.+
T Consensus 200 ~~n~l~~l-----~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 200 SYNLLSTL-----AIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp CSSCCSEE-----ECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE
T ss_pred ccCccccc-----cCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC
Confidence 88888753 34567889999999887 455432 4689999999999886 3678889999999999999998
Q ss_pred ccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCC
Q 002360 688 TIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGL 767 (931)
Q Consensus 688 ~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L 767 (931)
..|..|++++.| +.|+|++|.+++ +|..+..+++|
T Consensus 269 ~~~~~~~~l~~L--------------------------------------------~~L~Ls~N~l~~-l~~~~~~l~~L 303 (597)
T 3oja_B 269 IMYHPFVKMQRL--------------------------------------------ERLYISNNRLVA-LNLYGQPIPTL 303 (597)
T ss_dssp EESGGGTTCSSC--------------------------------------------CEEECTTSCCCE-EECSSSCCTTC
T ss_pred CCHHHhcCccCC--------------------------------------------CEEECCCCCCCC-CCcccccCCCC
Confidence 888888776665 789999999985 57778889999
Q ss_pred CEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCCCCccCcccccccCCC-
Q 002360 768 QSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGN- 846 (931)
Q Consensus 768 ~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n- 846 (931)
+.|+|++|.++ .+|..++.+++|+.|+|++|++++. | +..+++|++|++++|+++|..+. ..+..+....+.++
T Consensus 304 ~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~ 378 (597)
T 3oja_B 304 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDAD 378 (597)
T ss_dssp CEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCC
T ss_pred cEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhcccccc
Confidence 99999999999 7888899999999999999999865 3 67788999999999999987432 23555556667777
Q ss_pred CCCCCC
Q 002360 847 DLCGAP 852 (931)
Q Consensus 847 ~l~~~~ 852 (931)
..|+.+
T Consensus 379 ~~C~~~ 384 (597)
T 3oja_B 379 QHCKID 384 (597)
T ss_dssp CCCCTT
T ss_pred ccCCcc
Confidence 677754
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.7e-30 Score=284.88 Aligned_cols=215 Identities=23% Similarity=0.355 Sum_probs=136.7
Q ss_pred CCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEec
Q 002360 552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDV 631 (931)
Q Consensus 552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 631 (931)
++|+.|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++
T Consensus 132 ~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 206 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTA 206 (347)
T ss_dssp TTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred CceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeec
Confidence 445555555553333222 25555666666666666553322 5566666666666666664433 566666666666
Q ss_pred CCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccc
Q 002360 632 GENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDI 711 (931)
Q Consensus 632 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 711 (931)
++|.+.+ ++. + ..+++|++|++++|++++..+ +..+++|+.|++++|++++. +.+..++
T Consensus 207 ~~n~l~~-~~~-~-~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~-------------- 265 (347)
T 4fmz_A 207 YVNQITD-ITP-V-ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLT-------------- 265 (347)
T ss_dssp CSSCCCC-CGG-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCT--------------
T ss_pred ccCCCCC-Cch-h-hcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCC--------------
Confidence 6666663 222 2 256677777777777664433 66677777777777776642 2233322
Q ss_pred cccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCC
Q 002360 712 LYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI 791 (931)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L 791 (931)
.|+.|++++|++++. +.+..+++|++|++++|++++..|..++.+++|
T Consensus 266 ------------------------------~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 266 ------------------------------KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp ------------------------------TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred ------------------------------CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 346777777777753 357778888888888888887777778888888
Q ss_pred CEEeccCCcCcccCcccccCCCCCCeeeCCCcccc
Q 002360 792 ESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN 826 (931)
Q Consensus 792 ~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 826 (931)
+.|++++|++++..| +..+++|++|++++|+++
T Consensus 314 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 888888888887666 777888888888888775
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.4e-30 Score=304.24 Aligned_cols=265 Identities=21% Similarity=0.202 Sum_probs=153.9
Q ss_pred CccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCC
Q 002360 91 ELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLL 170 (931)
Q Consensus 91 ~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L 170 (931)
.+++++.+++++|.+... .+..+..+++|++|+|++|.+.+..|..|+.+++|++|+|++|.+..++...
T Consensus 49 ~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------- 118 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV--------- 118 (597)
T ss_dssp GGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT---------
T ss_pred cCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH---------
Confidence 478899999999999864 3456789999999999999999888889999999999999988877665443
Q ss_pred CeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcC
Q 002360 171 EHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLY 250 (931)
Q Consensus 171 ~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 250 (931)
++.+++|++|++++|.+..+++..|.++++|++|++++|.+.+..|..|+.+++|++|+++
T Consensus 119 -------------------~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 119 -------------------FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179 (597)
T ss_dssp -------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred -------------------HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence 3345555555555555555555555666666666666666665555566666666666666
Q ss_pred CCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEEcCCCcCCC
Q 002360 251 SNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQ 330 (931)
Q Consensus 251 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 330 (931)
+|.+++.. ++.+++|+.|++++|.+.+ +...++|++|++++| .+....+.. .++|+.|++++|.+++
T Consensus 180 ~N~l~~~~---~~~l~~L~~L~l~~n~l~~------l~~~~~L~~L~ls~n-~l~~~~~~~---~~~L~~L~L~~n~l~~ 246 (597)
T 3oja_B 180 SNRLTHVD---LSLIPSLFHANVSYNLLST------LAIPIAVEELDASHN-SINVVRGPV---NVELTILKLQHNNLTD 246 (597)
T ss_dssp TSCCSBCC---GGGCTTCSEEECCSSCCSE------EECCTTCSEEECCSS-CCCEEECSC---CSCCCEEECCSSCCCC
T ss_pred CCCCCCcC---hhhhhhhhhhhcccCcccc------ccCCchhheeeccCC-ccccccccc---CCCCCEEECCCCCCCC
Confidence 66665542 3445566666666665542 233345556666555 333221111 1234444444444433
Q ss_pred cchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcC
Q 002360 331 DISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKL 405 (931)
Q Consensus 331 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 405 (931)
. ..+..+ ++|+.|++++|.+.+..|..++.+++|++|+|++|.+.+ +|..+..+++|++|+|++|.+
T Consensus 247 ~--~~l~~l-----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l 313 (597)
T 3oja_B 247 T--AWLLNY-----PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL 313 (597)
T ss_dssp C--GGGGGC-----TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCC
T ss_pred C--hhhccC-----CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCC
Confidence 1 222222 344444444444444444444444444444444444442 233333344444444444444
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.1e-29 Score=278.31 Aligned_cols=306 Identities=25% Similarity=0.304 Sum_probs=236.7
Q ss_pred ccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCC
Q 002360 89 LLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLS 168 (931)
Q Consensus 89 l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~ 168 (931)
+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++ +|. +.++++|++|++++|.+..++ .+.+++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~~----~~~~l~ 110 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDIS----ALQNLT 110 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG----GGTTCT
T ss_pred chhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCch----HHcCCC
Confidence 4578889999999988874 34 37888999999999998874 444 888999999999988877654 378888
Q ss_pred CCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEE
Q 002360 169 LLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLD 248 (931)
Q Consensus 169 ~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 248 (931)
+|++|++++|.++..+. +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 111 ~L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~ 183 (347)
T 4fmz_A 111 NLRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183 (347)
T ss_dssp TCSEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEE
T ss_pred cCCEEECcCCcccCchh----hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEE
Confidence 89999998888887654 6788889999998886555444 37888889999999888875433 77888899999
Q ss_pred cCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEEcCCCcC
Q 002360 249 LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKL 328 (931)
Q Consensus 249 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l 328 (931)
+++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++| .+.+..+ +..+++|+.|++++|.+
T Consensus 184 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNN-KITDLSP--LANLSQLTWLEIGTNQI 255 (347)
T ss_dssp CTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred ccCCccccccc--ccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCC-ccCCCcc--hhcCCCCCEEECCCCcc
Confidence 99888876544 7788888999998888864322 677888888888888 6665443 77888888888888887
Q ss_pred CCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcCCCc
Q 002360 329 SQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGT 408 (931)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 408 (931)
++. ..+..+ ++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..++.+++|++|++++|++++.
T Consensus 256 ~~~--~~~~~l-----~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 256 SDI--NAVKDL-----TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp CCC--GGGTTC-----TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred CCC--hhHhcC-----CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence 763 234444 7888888888888765 3577788888888888888877777888888888888888888765
Q ss_pred cchhhhccccccceeccCCcee
Q 002360 409 VSEIHFVNLTKLVSFLANANSL 430 (931)
Q Consensus 409 ~~~~~~~~l~~L~~L~l~~n~l 430 (931)
.+ +..+++|+.+++++|.+
T Consensus 327 ~~---~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 327 RP---LASLSKMDSADFANQVI 345 (347)
T ss_dssp GG---GGGCTTCSEESSSCC--
T ss_pred cC---hhhhhccceeehhhhcc
Confidence 54 66677777777777654
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=5.6e-33 Score=317.65 Aligned_cols=288 Identities=20% Similarity=0.191 Sum_probs=132.6
Q ss_pred cCccEEEcCCccccccccc-ccCCCCCCCEEeccCCcCCc----CccccccCCCCCCEEEccCCcCCCccchhhhccccc
Q 002360 345 YELESLYLRGCQIFGHLTN-QLGQFKRLNFLGLSNNQMDG----SIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTK 419 (931)
Q Consensus 345 ~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 419 (931)
++|++|++++|+++..... .+..+++|++|++++|.+.+ .++..+..+++|++|++++|.+........+..++.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4455566655555433222 24455666666666666553 234445555666666666666543222111111110
Q ss_pred cceeccCCceeEEecCCCCCCCccccEEEccCCCCCC----CcChhhhccCCCcEEeCCCCCCCCCcchhHHhcc----c
Q 002360 420 LVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGP----RFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSI----F 491 (931)
Q Consensus 420 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~----~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~----~ 491 (931)
...+|++|++++|.++. .++..+..+++|++|++++|++++..+..+...+ +
T Consensus 83 --------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 142 (461)
T 1z7x_W 83 --------------------PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142 (461)
T ss_dssp --------------------TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred --------------------CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence 00134445555554442 3455666677777777777777654444433321 1
Q ss_pred cceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCc
Q 002360 492 QYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDC 571 (931)
Q Consensus 492 ~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 571 (931)
+|++|++++| .+++.....++..+..+++|++|++++|.+++..+..
T Consensus 143 ~L~~L~L~~n---------------------------------~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 189 (461)
T 1z7x_W 143 RLEKLQLEYC---------------------------------SLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRV 189 (461)
T ss_dssp CCCEEECTTS---------------------------------CCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred cceEEECCCC---------------------------------CCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHH
Confidence 2333333333 3333222222222223455555555555554432222
Q ss_pred cc-----CCCCCCEEecCCCcceec----CCCcccCCCCCCEEEccCCcCcccc-----chhhccCCCCcEEecCCCccc
Q 002360 572 WM-----NWPRLRTLNLGNNNFTGS----LPMSIGTLTSLRSLNLRNNRLSGVI-----PTSFKNFSILEALDVGENELV 637 (931)
Q Consensus 572 ~~-----~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~L~~N~l~ 637 (931)
+. ..++|++|++++|.+++. ++..+..+++|++|++++|.++... +..+..+++|++|++++|.++
T Consensus 190 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~ 269 (461)
T 1z7x_W 190 LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269 (461)
T ss_dssp HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 21 133555555555555432 2334444555555555555554322 111223455555555555554
Q ss_pred cc----CchhHHhhcCcCcEEEccCccccccCCcccC-----CCCCcCEEEccCCccc
Q 002360 638 GS----IPTWIGERFSRLMILILRSNKFHGDFPIQLC-----RLASLQILDVAYNSLL 686 (931)
Q Consensus 638 ~~----~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~ 686 (931)
+. ++..+. .+++|++|++++|.+.+..+..+. ..++|+.|++++|.++
T Consensus 270 ~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 326 (461)
T 1z7x_W 270 AKGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326 (461)
T ss_dssp HHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHHHHHHHHh-hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence 32 333332 345555555555555433222111 1245555555555554
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.3e-32 Score=314.66 Aligned_cols=367 Identities=17% Similarity=0.150 Sum_probs=252.9
Q ss_pred CCCCEEeccCCcCCcCcccc-ccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEE
Q 002360 369 KRLNFLGLSNNQMDGSIPLS-LGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVL 447 (931)
Q Consensus 369 ~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 447 (931)
++|++|++++|.+....... +..+++|++|++++|+++.....
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~------------------------------------ 46 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCK------------------------------------ 46 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHH------------------------------------
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHH------------------------------------
Confidence 45677777777776443222 56677777777777776532111
Q ss_pred EccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccc----cceEEeccCccccc----CCCCCCCCCCCccc
Q 002360 448 ELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIF----QYYYLNVSGNQIYG----GVPKFDSPSMPLII 519 (931)
Q Consensus 448 ~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~----~L~~L~ls~n~l~~----~~p~~~~~~~~~~~ 519 (931)
.++..+..+++|++|++++|++.+..+..+...++ +|++|++++|.++. .++. .
T Consensus 47 ---------~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~---------~ 108 (461)
T 1z7x_W 47 ---------DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS---------T 108 (461)
T ss_dssp ---------HHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH---------H
T ss_pred ---------HHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH---------H
Confidence 12233344455555555555554443444444333 45555555555442 1111 1
Q ss_pred CCCCccccEEEcccCCCccccchhhhccC-CCCCCccEEECcCCccccc----cCCcccCCCCCCEEecCCCcceecCCC
Q 002360 520 TPSLLLGSIFDLSNNALSGSIFHLICQGE-NFSKNIEFLKLSTNHFSEG----IPDCWMNWPRLRTLNLGNNNFTGSLPM 594 (931)
Q Consensus 520 ~~~~~~l~~l~ls~n~l~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 594 (931)
....+.++.+++++|.+++..+..++..+ ...++|++|++++|++++. ++..+..+++|++|++++|.+....+.
T Consensus 109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 188 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR 188 (461)
T ss_dssp TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH
Confidence 11225666777777776655544444332 2246799999999999874 355667789999999999998755443
Q ss_pred ccc-----CCCCCCEEEccCCcCccc----cchhhccCCCCcEEecCCCcccccCc----hhHHhhcCcCcEEEccCccc
Q 002360 595 SIG-----TLTSLRSLNLRNNRLSGV----IPTSFKNFSILEALDVGENELVGSIP----TWIGERFSRLMILILRSNKF 661 (931)
Q Consensus 595 ~~~-----~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p----~~~~~~l~~L~~L~L~~n~l 661 (931)
.+. ..++|++|++++|.++.. ++..+..+++|+.|++++|++.+... ..+...+++|++|++++|.+
T Consensus 189 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l 268 (461)
T 1z7x_W 189 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268 (461)
T ss_dssp HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 332 366999999999999874 57778889999999999999875432 22222478999999999998
Q ss_pred ccc----CCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhh
Q 002360 662 HGD----FPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYN 737 (931)
Q Consensus 662 ~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (931)
+.. ++..+..+++|+.|++++|++.+..+..+...- .
T Consensus 269 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l---------------------------------------~ 309 (461)
T 1z7x_W 269 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL---------------------------------------L 309 (461)
T ss_dssp CHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH---------------------------------------T
T ss_pred CHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh---------------------------------------c
Confidence 865 566777789999999999998755444332210 0
Q ss_pred hhccceeEEEcccCccccc----CCccccCCCCCCEEEccCCcCcccCCcCccC-----cCCCCEEeccCCcCcc----c
Q 002360 738 SILNLVRSIDISMNNFSGE----IPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV-----MRSIESLDFSANQLSG----Q 804 (931)
Q Consensus 738 ~~~~~L~~LdLs~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~-----l~~L~~LdLs~N~l~~----~ 804 (931)
...+.|+.|+|++|.+++. ++..+..+++|++|+|++|++++..+..+.. .++|++|++++|++++ .
T Consensus 310 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 389 (461)
T 1z7x_W 310 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 389 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH
Confidence 0123569999999999865 5677788899999999999998766655543 6799999999999997 7
Q ss_pred CcccccCCCCCCeeeCCCcccccc
Q 002360 805 IPQSMSNLSFLNYLNLSNNNLNGE 828 (931)
Q Consensus 805 ~p~~l~~l~~L~~L~ls~N~l~g~ 828 (931)
+|..+..+++|++||+++|++++.
T Consensus 390 l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHHhCCCccEEECCCCCCCHH
Confidence 899999999999999999999764
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=8.4e-29 Score=268.98 Aligned_cols=222 Identities=19% Similarity=0.250 Sum_probs=142.3
Q ss_pred CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCcc--ccchhhccCCCCcE
Q 002360 551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSG--VIPTSFKNFSILEA 628 (931)
Q Consensus 551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~ 628 (931)
+++|++|++++|+++. +|..+. ++|++|++++|++++..+..+.++++|++|++++|.+.. ..+..+.++++|++
T Consensus 99 l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 99 LVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp CTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred CCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 4556666666666654 333322 466666666666665555556666666677776666643 55566666777777
Q ss_pred EecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCC
Q 002360 629 LDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQS 708 (931)
Q Consensus 629 L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~ 708 (931)
|++++|.++ .+|..+ .++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|
T Consensus 176 L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------- 242 (330)
T 1xku_A 176 IRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL--------- 242 (330)
T ss_dssp EECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC---------
T ss_pred EECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC---------
Confidence 777777766 455543 2567777777777776666677777777777777777776655555554444
Q ss_pred ccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccC-
Q 002360 709 SDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV- 787 (931)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~- 787 (931)
+.|+|++|+++ .+|..+..+++|++|++++|++++..+..|..
T Consensus 243 -----------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~ 286 (330)
T 1xku_A 243 -----------------------------------RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286 (330)
T ss_dssp -----------------------------------CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred -----------------------------------CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCc
Confidence 66777777776 66667777777777777777777655555543
Q ss_pred -----cCCCCEEeccCCcCcc--cCcccccCCCCCCeeeCCCcc
Q 002360 788 -----MRSIESLDFSANQLSG--QIPQSMSNLSFLNYLNLSNNN 824 (931)
Q Consensus 788 -----l~~L~~LdLs~N~l~~--~~p~~l~~l~~L~~L~ls~N~ 824 (931)
.++|+.|++++|++.. ..|..|..+..++.+++++|+
T Consensus 287 ~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 2567777777777753 455667777777777777764
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=4.8e-29 Score=271.06 Aligned_cols=221 Identities=20% Similarity=0.258 Sum_probs=168.1
Q ss_pred CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCc--cccchhhccCCCCcE
Q 002360 551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLS--GVIPTSFKNFSILEA 628 (931)
Q Consensus 551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~ 628 (931)
+++|++|++++|+++. +|..+. ++|++|++++|++++..+..|.++++|++|++++|.++ +..|..+..+ +|+.
T Consensus 101 l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 101 LRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY 176 (332)
T ss_dssp CTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC
T ss_pred cCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCE
Confidence 4556666666666654 333332 56777777777777555555777777777777777775 3566667666 7888
Q ss_pred EecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCC
Q 002360 629 LDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQS 708 (931)
Q Consensus 629 L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~ 708 (931)
|++++|+++ .+|..+ .++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|
T Consensus 177 L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--------- 243 (332)
T 2ft3_A 177 LRISEAKLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL--------- 243 (332)
T ss_dssp CBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC---------
T ss_pred EECcCCCCC-ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC---------
Confidence 888888887 477654 3688888899998888777888889999999999999987777677665555
Q ss_pred ccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCc
Q 002360 709 SDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVM 788 (931)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l 788 (931)
+.|+|++|+++ .+|..+..+++|++|++++|++++..+..|...
T Consensus 244 -----------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 244 -----------------------------------RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287 (332)
T ss_dssp -----------------------------------CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred -----------------------------------CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccc
Confidence 88999999998 788889999999999999999997777777653
Q ss_pred ------CCCCEEeccCCcCc--ccCcccccCCCCCCeeeCCCcc
Q 002360 789 ------RSIESLDFSANQLS--GQIPQSMSNLSFLNYLNLSNNN 824 (931)
Q Consensus 789 ------~~L~~LdLs~N~l~--~~~p~~l~~l~~L~~L~ls~N~ 824 (931)
.+|+.|++++|++. +..|..|..++.|+.+++++|+
T Consensus 288 ~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 67899999999988 6778889999999999999885
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=3.4e-30 Score=278.39 Aligned_cols=278 Identities=17% Similarity=0.229 Sum_probs=185.5
Q ss_pred CCCCHHHHHHHHHhhhcC-CCCCCCCCCCC---CCCCCCcCccceEecC--------CCCcEEEEEcCCCCCCCchhhhc
Q 002360 10 TSCIESEREALLKLKHDL-RDPSHRLASWI---GDNGDCCKWGGVLCGN--------FTGHVLELNLQNPFSPDDNEAYQ 77 (931)
Q Consensus 10 ~~~~~~~~~~ll~~k~~~-~d~~~~l~~w~---~~~~~~c~w~g~~c~~--------~~~~v~~L~l~~~~~~~~~~~~~ 77 (931)
..+..+|++||++||..+ .|+.+.++.|. ....++|.|.|+.|.. ...+|++|+++++
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n---------- 91 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV---------- 91 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS----------
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC----------
Confidence 356778999999999988 47766678894 2577899999999952 3468899999885
Q ss_pred ccccceeecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCc-ccc
Q 002360 78 RSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVY-FEL 156 (931)
Q Consensus 78 ~~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~-~~~ 156 (931)
.+ ..+|..+.++++|++|+|++|.++ .+|..++.+++|++|+|++|.+. .+|..++++++|++|++++|. ...
T Consensus 92 --~l-~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~ 165 (328)
T 4fcg_A 92 --PL-PQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTE 165 (328)
T ss_dssp --CC-SSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCC
T ss_pred --Cc-hhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccc
Confidence 44 378888888999999999999988 47888899999999999999988 788889999999999999865 344
Q ss_pred cccCccccCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcc
Q 002360 157 HAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPS 236 (931)
Q Consensus 157 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 236 (931)
+|..+... .+ ...+..+++|++|++++|.++.++ ..+.++++|++|++++|.+.+ +|.
T Consensus 166 ~p~~~~~~---------~~-----------~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~-l~~ 223 (328)
T 4fcg_A 166 LPEPLAST---------DA-----------SGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSA-LGP 223 (328)
T ss_dssp CCSCSEEE---------C------------CCCEEESTTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCCC-CCG
T ss_pred cChhHhhc---------cc-----------hhhhccCCCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCCc-Cch
Confidence 55544210 00 001233455555555555555332 235555555555555555552 344
Q ss_pred cccCCCCCCEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCC
Q 002360 237 RLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLC 316 (931)
Q Consensus 237 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 316 (931)
.++.+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|.. +..+++|++|++++| .+.+.+|..+++++
T Consensus 224 ~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n-~~~~~iP~~l~~L~ 301 (328)
T 4fcg_A 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGC-VNLSRLPSLIAQLP 301 (328)
T ss_dssp GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCCEEECTTC-TTCCCCCGGGGGSC
T ss_pred hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh-hhcCCCCCEEeCCCC-CchhhccHHHhhcc
Confidence 4555555555555555555555555555566666666665555555554 555666666666666 55556666666666
Q ss_pred CCcEEEcCCCc
Q 002360 317 KLTSFSMASTK 327 (931)
Q Consensus 317 ~L~~L~l~~~~ 327 (931)
+|+.+++..+.
T Consensus 302 ~L~~l~l~~~~ 312 (328)
T 4fcg_A 302 ANCIILVPPHL 312 (328)
T ss_dssp TTCEEECCGGG
T ss_pred CceEEeCCHHH
Confidence 66666665443
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=3.2e-28 Score=264.34 Aligned_cols=226 Identities=19% Similarity=0.264 Sum_probs=191.7
Q ss_pred CCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEE
Q 002360 550 FSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEAL 629 (931)
Q Consensus 550 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 629 (931)
.+++|++|++++|++++..|..|..+++|++|++++|+++ .+|..+. ++|++|++++|.+++..+..+.++++|++|
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 150 (330)
T 1xku_A 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVV 150 (330)
T ss_dssp TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEE
T ss_pred cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEE
Confidence 3678999999999999888889999999999999999998 5666554 789999999999998888889999999999
Q ss_pred ecCCCcccc--cCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCC
Q 002360 630 DVGENELVG--SIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQ 707 (931)
Q Consensus 630 ~L~~N~l~~--~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~ 707 (931)
++++|++.. ..+..+. .+++|++|++++|.++. +|..+. ++|+.|++++|++++..|..+.++++|
T Consensus 151 ~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L-------- 218 (330)
T 1xku_A 151 ELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL-------- 218 (330)
T ss_dssp ECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC--------
T ss_pred ECCCCcCCccCcChhhcc-CCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC--------
Confidence 999999853 4555554 78999999999999884 555543 789999999999998878777766655
Q ss_pred CccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccC
Q 002360 708 SSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV 787 (931)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~ 787 (931)
+.|+|++|++++..+..+..+++|++|+|++|+++ .+|..+..
T Consensus 219 ------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 219 ------------------------------------AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp ------------------------------------CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred ------------------------------------CEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 88999999999888888999999999999999998 88888999
Q ss_pred cCCCCEEeccCCcCcccCcccccCC------CCCCeeeCCCccccc
Q 002360 788 MRSIESLDFSANQLSGQIPQSMSNL------SFLNYLNLSNNNLNG 827 (931)
Q Consensus 788 l~~L~~LdLs~N~l~~~~p~~l~~l------~~L~~L~ls~N~l~g 827 (931)
+++|++|++++|++++..+..|... +.|+.+++++|++..
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 9999999999999998777776543 678899999998863
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=6.4e-28 Score=262.16 Aligned_cols=289 Identities=20% Similarity=0.214 Sum_probs=165.8
Q ss_pred cCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCCCe
Q 002360 93 KHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEH 172 (931)
Q Consensus 93 ~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~ 172 (931)
.++++++++++.++ .+|..+. ++|++|++++|.+.+..|.+|.++++|++|++++|.+..++.. .+.++++|++
T Consensus 33 c~l~~l~~~~~~l~--~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~ 106 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK--AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK--AFSPLRKLQK 106 (332)
T ss_dssp EETTEEECCSSCCS--SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG--GSTTCTTCCE
T ss_pred ccCCEEECCCCCcc--ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh--HhhCcCCCCE
Confidence 36889999999888 4576553 6899999999998877778899999999999998887765332 2566677777
Q ss_pred EEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCC--CCcccccCCCCCCEEEcC
Q 002360 173 LYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQG--QIPSRLGNLTSLKHLDLY 250 (931)
Q Consensus 173 L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~ 250 (931)
|++++|.++.++... .++|++|++++|.+..+++..+.++++|++|++++|.+.. ..+..+..+ +|++|+++
T Consensus 107 L~L~~n~l~~l~~~~-----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 107 LYISKNHLVEIPPNL-----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp EECCSSCCCSCCSSC-----CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred EECCCCcCCccCccc-----cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 777777666554321 1566666666666666665556666666666666666532 344445544 55666666
Q ss_pred CCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEEcCCCcCCC
Q 002360 251 SNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQ 330 (931)
Q Consensus 251 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 330 (931)
+|++++. |..+. ++|++|++++|.+.+..+.. +..+++|++|++++| .+.+..+..+..++
T Consensus 181 ~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~-l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~-------------- 241 (332)
T 2ft3_A 181 EAKLTGI-PKDLP--ETLNELHLDHNKIQAIELED-LLRYSKLYRLGLGHN-QIRMIENGSLSFLP-------------- 241 (332)
T ss_dssp SSBCSSC-CSSSC--SSCSCCBCCSSCCCCCCTTS-STTCTTCSCCBCCSS-CCCCCCTTGGGGCT--------------
T ss_pred CCCCCcc-Ccccc--CCCCEEECCCCcCCccCHHH-hcCCCCCCEEECCCC-cCCcCChhHhhCCC--------------
Confidence 5555442 22221 45555555555554322222 445555555555555 44444444444444
Q ss_pred cchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccC------CCCCCEEEccCCc
Q 002360 331 DISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQ------MANLESLDLSNNK 404 (931)
Q Consensus 331 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~------l~~L~~L~L~~n~ 404 (931)
+|++|++++|++. .+|..+..+++|++|++++|.+++..+..|.. .++|+.|++++|.
T Consensus 242 ---------------~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 242 ---------------TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp ---------------TCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred ---------------CCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence 4555555555544 33444455555555555555555443333332 2445555665555
Q ss_pred CCC-ccchhhhccccccceeccCCc
Q 002360 405 LNG-TVSEIHFVNLTKLVSFLANAN 428 (931)
Q Consensus 405 l~~-~~~~~~~~~l~~L~~L~l~~n 428 (931)
+.. .++...|..+++|+.+++++|
T Consensus 306 ~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 306 VPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccccccCcccccccchhhhhhcccc
Confidence 541 223334555555555555554
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=5.7e-28 Score=259.47 Aligned_cols=253 Identities=22% Similarity=0.255 Sum_probs=215.2
Q ss_pred ccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceec--CCCcccCCCCCC
Q 002360 526 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGS--LPMSIGTLTSLR 603 (931)
Q Consensus 526 l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~ 603 (931)
.+.++++++.++.. |.. ..+++++|++++|++++..+..|.++++|++|++++|+++.. .|..+..+++|+
T Consensus 9 ~~~l~c~~~~l~~i-p~~------~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 81 (306)
T 2z66_A 9 GTEIRCNSKGLTSV-PTG------IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81 (306)
T ss_dssp TTEEECCSSCCSSC-CSC------CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCC
T ss_pred CCEEEcCCCCcccC-CCC------CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccC
Confidence 34566666655432 211 136899999999999986666789999999999999998833 366777899999
Q ss_pred EEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCC
Q 002360 604 SLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYN 683 (931)
Q Consensus 604 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 683 (931)
+|++++|.+.. +|..+..+++|++|++++|++++..+...+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 82 ~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 82 YLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp EEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC
Confidence 99999999984 66678999999999999999985443233447999999999999999989999999999999999999
Q ss_pred cccc-ccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCcccc
Q 002360 684 SLLG-TIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVT 762 (931)
Q Consensus 684 ~l~~-~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~ 762 (931)
.+.+ .+|..+..+++| +.|+|++|++++..|..+.
T Consensus 161 ~l~~~~~~~~~~~l~~L--------------------------------------------~~L~Ls~n~l~~~~~~~~~ 196 (306)
T 2z66_A 161 SFQENFLPDIFTELRNL--------------------------------------------TFLDLSQCQLEQLSPTAFN 196 (306)
T ss_dssp EEGGGEECSCCTTCTTC--------------------------------------------CEEECTTSCCCEECTTTTT
T ss_pred ccccccchhHHhhCcCC--------------------------------------------CEEECCCCCcCCcCHHHhc
Confidence 9987 577777766655 8999999999998899999
Q ss_pred CCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCC-CCCeeeCCCccccccCC
Q 002360 763 NLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLS-FLNYLNLSNNNLNGEIP 830 (931)
Q Consensus 763 ~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~ip 830 (931)
.+++|++|+|++|++++..+..+..+++|+.||+++|++++..|..+..++ +|++|++++|+++|.++
T Consensus 197 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 999999999999999987777899999999999999999999999999984 99999999999998754
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=3e-28 Score=263.15 Aligned_cols=227 Identities=17% Similarity=0.251 Sum_probs=200.0
Q ss_pred CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360 551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD 630 (931)
Q Consensus 551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 630 (931)
.+.++.|++++|.++. +|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 3678999999999984 7777888999999999999999 88989999999999999999998 7788899999999999
Q ss_pred cCCCcccccCchhHH--------hhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCcccccccccccc
Q 002360 631 VGENELVGSIPTWIG--------ERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATA 702 (931)
Q Consensus 631 L~~N~l~~~~p~~~~--------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~ 702 (931)
+++|++.+.+|..+. ..+++|++|++++|+++ .+|..+..+++|+.|+|++|++++ +|+.++.+++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L--- 231 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL--- 231 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC---
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC---
Confidence 999988888988764 13889999999999998 788889999999999999999984 56666665554
Q ss_pred CCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCC
Q 002360 703 DSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIP 782 (931)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 782 (931)
+.|+|++|++.+.+|..++.+++|++|+|++|++.+.+|
T Consensus 232 -----------------------------------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 232 -----------------------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp -----------------------------------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred -----------------------------------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 889999999999999999999999999999999999999
Q ss_pred cCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCcccc
Q 002360 783 DNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN 826 (931)
Q Consensus 783 ~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 826 (931)
..++.+++|++|||++|++.+.+|..+.++++|+.+++..|.+.
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999999999999999999999999999999999998877654
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4.3e-27 Score=267.11 Aligned_cols=251 Identities=23% Similarity=0.238 Sum_probs=217.1
Q ss_pred ccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEE
Q 002360 526 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSL 605 (931)
Q Consensus 526 l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 605 (931)
...+++++..++. +|..+ .++++.|+|++|++++..+..|.++++|++|+|++|++++..|..|.++++|++|
T Consensus 56 ~~~v~c~~~~l~~-iP~~~------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 128 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGI------PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128 (452)
T ss_dssp SCEEECCSSCCSS-CCSCC------CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CcEEEECCCCcCc-cCCCC------CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEE
Confidence 3456666666553 23222 3689999999999999989999999999999999999998888999999999999
Q ss_pred EccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCcc-ccccCCcccCCCCCcCEEEccCCc
Q 002360 606 NLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNK-FHGDFPIQLCRLASLQILDVAYNS 684 (931)
Q Consensus 606 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~N~ 684 (931)
+|++|++++..+..|.++++|++|++++|++. .+|...+..+++|+.|++++|+ +....+..+..+++|+.|+|++|+
T Consensus 129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred ECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence 99999999888888999999999999999998 5666555689999999999955 444444578999999999999999
Q ss_pred cccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCC
Q 002360 685 LLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNL 764 (931)
Q Consensus 685 l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l 764 (931)
+++. | .+..+ +.|+.|+|++|++++..|..|.++
T Consensus 208 l~~~-~-~~~~l--------------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l 241 (452)
T 3zyi_A 208 IKDM-P-NLTPL--------------------------------------------VGLEELEMSGNHFPEIRPGSFHGL 241 (452)
T ss_dssp CSSC-C-CCTTC--------------------------------------------TTCCEEECTTSCCSEECGGGGTTC
T ss_pred cccc-c-ccccc--------------------------------------------ccccEEECcCCcCcccCcccccCc
Confidence 9843 4 23333 345899999999999999999999
Q ss_pred CCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCC
Q 002360 765 QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIP 830 (931)
Q Consensus 765 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 830 (931)
++|+.|+|++|++++..|..|..+++|+.|||++|++++..+..+..+++|+.|++++|++.|.+.
T Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 999999999999999999999999999999999999998888889999999999999999988654
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=7.1e-27 Score=264.32 Aligned_cols=251 Identities=22% Similarity=0.219 Sum_probs=215.7
Q ss_pred ccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEE
Q 002360 526 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSL 605 (931)
Q Consensus 526 l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 605 (931)
...+++++..+.. +|..+ .++++.|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|
T Consensus 45 ~~~v~c~~~~l~~-iP~~~------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L 117 (440)
T 3zyj_A 45 FSKVICVRKNLRE-VPDGI------STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL 117 (440)
T ss_dssp SCEEECCSCCCSS-CCSCC------CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEE
T ss_pred CCEEEeCCCCcCc-CCCCC------CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEE
Confidence 3456666665553 22222 3689999999999999888999999999999999999998888899999999999
Q ss_pred EccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCcc-ccccCCcccCCCCCcCEEEccCCc
Q 002360 606 NLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNK-FHGDFPIQLCRLASLQILDVAYNS 684 (931)
Q Consensus 606 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~N~ 684 (931)
++++|+++...+..|..+++|++|++++|++. .+|...+..+++|++|++++|+ +....+..+..+++|+.|+|++|+
T Consensus 118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp ECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred ECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence 99999999888888999999999999999998 5665555589999999999955 444445578999999999999999
Q ss_pred cccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCC
Q 002360 685 LLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNL 764 (931)
Q Consensus 685 l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l 764 (931)
++ .+|. +..+ +.|+.|||++|++++..|..|.++
T Consensus 197 l~-~~~~-~~~l--------------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l 230 (440)
T 3zyj_A 197 LR-EIPN-LTPL--------------------------------------------IKLDELDLSGNHLSAIRPGSFQGL 230 (440)
T ss_dssp CS-SCCC-CTTC--------------------------------------------SSCCEEECTTSCCCEECTTTTTTC
T ss_pred Cc-cccc-cCCC--------------------------------------------cccCEEECCCCccCccChhhhccC
Confidence 98 4442 3333 345899999999999999999999
Q ss_pred CCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCC
Q 002360 765 QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIP 830 (931)
Q Consensus 765 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 830 (931)
++|+.|+|++|++++..|..|..+++|+.|||++|++++..+..+..+++|+.|+|++|++.|.+.
T Consensus 231 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 999999999999999999999999999999999999998888889999999999999999987653
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.2e-27 Score=250.69 Aligned_cols=136 Identities=21% Similarity=0.184 Sum_probs=71.7
Q ss_pred CCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCc-CccccchhhccCCCCcEEe
Q 002360 552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNR-LSGVIPTSFKNFSILEALD 630 (931)
Q Consensus 552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~ 630 (931)
++++.|++++|++++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|. +....|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 455555555555555555555555555555555555555555555555555555555554 4444455555555555555
Q ss_pred cCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccc
Q 002360 631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGT 688 (931)
Q Consensus 631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 688 (931)
+++|++++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 112 l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 112 LDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp CTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 555555533333332 455555555555555544444444555555555555555433
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=3.3e-27 Score=253.54 Aligned_cols=235 Identities=20% Similarity=0.239 Sum_probs=177.4
Q ss_pred CCCccEEECcCCccccc--cCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccc-hhhccCCCCc
Q 002360 551 SKNIEFLKLSTNHFSEG--IPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIP-TSFKNFSILE 627 (931)
Q Consensus 551 ~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~ 627 (931)
+++|++|++++|+++.. .+..+..+++|++|++++|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|+
T Consensus 51 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 129 (306)
T 2z66_A 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129 (306)
T ss_dssp CTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCC
T ss_pred cccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCC
Confidence 45666666666666532 2445556677777777777776 355567777777777777777776554 5677777888
Q ss_pred EEecCCCcccccCchhHHhhcCcCcEEEccCccccc-cCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCC
Q 002360 628 ALDVGENELVGSIPTWIGERFSRLMILILRSNKFHG-DFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSD 706 (931)
Q Consensus 628 ~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~ 706 (931)
+|++++|.+.+..|..+. .+++|++|++++|.+++ .+|..+..+++|+.|++++|++++..|..+.++++|
T Consensus 130 ~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------- 201 (306)
T 2z66_A 130 YLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL------- 201 (306)
T ss_dssp EEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC-------
T ss_pred EEECCCCcCCccchhhcc-cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC-------
Confidence 888888887765555554 67888888888888876 577788888899999999999888777777666555
Q ss_pred CCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCcc
Q 002360 707 QSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIG 786 (931)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~ 786 (931)
+.|+|++|++++..+..+..+++|++|+|++|++++.+|..+.
T Consensus 202 -------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 202 -------------------------------------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp -------------------------------------CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred -------------------------------------CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 7899999999887777889999999999999999999999999
Q ss_pred Cc-CCCCEEeccCCcCcccCc--ccccCCCCCCeeeCCCccccccCCC
Q 002360 787 VM-RSIESLDFSANQLSGQIP--QSMSNLSFLNYLNLSNNNLNGEIPS 831 (931)
Q Consensus 787 ~l-~~L~~LdLs~N~l~~~~p--~~l~~l~~L~~L~ls~N~l~g~ip~ 831 (931)
.+ ++|++|++++|++++..+ .....+...+.+.+..+.+.|..|.
T Consensus 245 ~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp CCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred hhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 98 499999999999987532 1122344556677778888888775
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=262.23 Aligned_cols=258 Identities=19% Similarity=0.213 Sum_probs=178.6
Q ss_pred CCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEec
Q 002360 552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDV 631 (931)
Q Consensus 552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 631 (931)
++|++|++++|++++..+..|.++++|++|++++|++++..|..|.++++|++|++++|++++..+..|.++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 46777777777777655556777777777777777777666666777777777777777777655555677777777777
Q ss_pred CCCcccccCch-hHHhhcCcCcEEEccCc-cccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCc
Q 002360 632 GENELVGSIPT-WIGERFSRLMILILRSN-KFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSS 709 (931)
Q Consensus 632 ~~N~l~~~~p~-~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~ 709 (931)
++|+++ .+|. ..+..+++|++|++++| .+.+..+..+..+++|+.|++++|++++..|..+.++++|+.++...+..
T Consensus 132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 777776 4554 33335677777777776 35555556667777777777777777766676666666665443332211
Q ss_pred cccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCcccc---CCCCCCEEEccCCcCcc----cCC
Q 002360 710 DILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVT---NLQGLQSLNLSHNLFTG----RIP 782 (931)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~---~l~~L~~L~Ls~N~l~~----~ip 782 (931)
. .........++.|+.|++++|++++..+..+. ....++.++|++|.+++ .+|
T Consensus 211 ~--------------------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~ 270 (353)
T 2z80_A 211 I--------------------LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270 (353)
T ss_dssp T--------------------THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred c--------------------cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH
Confidence 0 11112223466789999999999876555443 45678889999988876 477
Q ss_pred cCccCcCCCCEEeccCCcCcccCccc-ccCCCCCCeeeCCCccccccCCC
Q 002360 783 DNIGVMRSIESLDFSANQLSGQIPQS-MSNLSFLNYLNLSNNNLNGEIPS 831 (931)
Q Consensus 783 ~~l~~l~~L~~LdLs~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip~ 831 (931)
..++.+++|+.||+++|+++ .+|.. |..+++|++|++++|+++|.+|.
T Consensus 271 ~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 271 KLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp HHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred HHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 78889999999999999999 55655 68999999999999999998773
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.8e-26 Score=244.84 Aligned_cols=230 Identities=21% Similarity=0.207 Sum_probs=205.0
Q ss_pred ccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCC
Q 002360 554 IEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGE 633 (931)
Q Consensus 554 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 633 (931)
-+.++.+++.++. +|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 13 ~~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 13 KVTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp SCEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 3678888888876 45433 46899999999999988888899999999999999999998899999999999999999
Q ss_pred Cc-ccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcccc
Q 002360 634 NE-LVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDIL 712 (931)
Q Consensus 634 N~-l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~ 712 (931)
|+ +.+..|..+. .+++|++|++++|.+++..|..+..+++|+.|++++|++++..+..++++++|
T Consensus 90 n~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------- 155 (285)
T 1ozn_A 90 NAQLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL------------- 155 (285)
T ss_dssp CTTCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred CCCccccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-------------
Confidence 98 6633355554 79999999999999998889999999999999999999997766667666655
Q ss_pred ccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCC
Q 002360 713 YAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE 792 (931)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 792 (931)
+.|+|++|++++..+..+..+++|++|++++|++++..|..|+.+++|+
T Consensus 156 -------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 156 -------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204 (285)
T ss_dssp -------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred -------------------------------cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccccc
Confidence 8999999999977777899999999999999999999999999999999
Q ss_pred EEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCC
Q 002360 793 SLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS 831 (931)
Q Consensus 793 ~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 831 (931)
.|++++|++++..|..+..+++|++|++++|++++.++.
T Consensus 205 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp EEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred EeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 999999999988888899999999999999999987664
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=7.3e-29 Score=293.15 Aligned_cols=84 Identities=15% Similarity=0.103 Sum_probs=51.6
Q ss_pred CCCCCcEEEcCCCcCCCc----chhhhhhcccccccCccEEEcCCcccc----cccccccCCCCCCCEEeccCCcCCcCc
Q 002360 314 KLCKLTSFSMASTKLSQD----ISEILGIFSGCVAYELESLYLRGCQIF----GHLTNQLGQFKRLNFLGLSNNQMDGSI 385 (931)
Q Consensus 314 ~l~~L~~L~l~~~~l~~~----~~~~~~~~~~~~~~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~~ 385 (931)
.+++|++|++++|.+++. ++.....+ ++|++|++++|.+. +.++..+..+++|++|++++|.+.+ +
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~-----~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l 235 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHN-----TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-L 235 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHC-----CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-G
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcC-----CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-H
Confidence 444555555555544433 22222333 66777777777665 2334445567888888888887774 5
Q ss_pred cccccCCCCCCEEEccCC
Q 002360 386 PLSLGQMANLESLDLSNN 403 (931)
Q Consensus 386 p~~~~~l~~L~~L~L~~n 403 (931)
|..+..+++|++|+++..
T Consensus 236 ~~~~~~~~~L~~L~l~~~ 253 (592)
T 3ogk_B 236 VGFFKAAANLEEFCGGSL 253 (592)
T ss_dssp HHHHHHCTTCCEEEECBC
T ss_pred HHHHhhhhHHHhhccccc
Confidence 667778888888888763
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=2e-28 Score=289.48 Aligned_cols=389 Identities=12% Similarity=0.047 Sum_probs=225.1
Q ss_pred CCCCCcEEEcCCCcCCCcchhhhhhcccccccC-ccEEEcCCccc-cc-ccccccCCCCCCCEEeccCCcCCcC----cc
Q 002360 314 KLCKLTSFSMASTKLSQDISEILGIFSGCVAYE-LESLYLRGCQI-FG-HLTNQLGQFKRLNFLGLSNNQMDGS----IP 386 (931)
Q Consensus 314 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-L~~L~L~~n~l-~~-~~~~~l~~l~~L~~L~L~~n~l~~~----~p 386 (931)
.+++|++|+++++.+++..+..+.... +. |++|++++|.. .. .++.....+++|++|+|++|.+.+. ++
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~----~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~ 185 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKAR----ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLH 185 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHH----GGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhc----cccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHH
Confidence 567777777777776665555554321 33 77777777752 11 1222233567777777777776544 33
Q ss_pred ccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccC
Q 002360 387 LSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQK 466 (931)
Q Consensus 387 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~ 466 (931)
.....+++|++|++++|.+++.... .++..+..++
T Consensus 186 ~~~~~~~~L~~L~L~~n~~~~~~~~---------------------------------------------~l~~~~~~~~ 220 (592)
T 3ogk_B 186 ELAQHNTSLEVLNFYMTEFAKISPK---------------------------------------------DLETIARNCR 220 (592)
T ss_dssp HHHHHCCCCCEEECTTCCCSSCCHH---------------------------------------------HHHHHHHHCT
T ss_pred HHHhcCCCccEEEeeccCCCccCHH---------------------------------------------HHHHHHhhCC
Confidence 3345667777777777766522111 1233344556
Q ss_pred CCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhc
Q 002360 467 KLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQ 546 (931)
Q Consensus 467 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~ 546 (931)
+|+.|++++|.+.+ ++ .....+++|++|+++..... ++.. ....
T Consensus 221 ~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~--~~~~--------------------------------~~~~ 264 (592)
T 3ogk_B 221 SLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNED--IGMP--------------------------------EKYM 264 (592)
T ss_dssp TCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCC--TTCT--------------------------------TSSS
T ss_pred CCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccc--cchH--------------------------------HHHH
Confidence 66666666666554 33 23344566666666542211 1100 0011
Q ss_pred cCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCC-CcccCCCCCCEEEccCCcCccccchhhccCCC
Q 002360 547 GENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLP-MSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSI 625 (931)
Q Consensus 547 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 625 (931)
.+..+++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|++|+++++-..+.++..+..+++
T Consensus 265 ~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred HhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence 123356677777766433 2355566667778888887777654322 23566777888877733333334444466777
Q ss_pred CcEEecCC-----------CcccccCchhHHhhcCcCcEEEccCccccccCCcccCC-CCCcCEEEcc----CCcccccc
Q 002360 626 LEALDVGE-----------NELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCR-LASLQILDVA----YNSLLGTI 689 (931)
Q Consensus 626 L~~L~L~~-----------N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls----~N~l~~~~ 689 (931)
|++|++++ |.+++.....+...+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++..
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 88888873 55554433344446778888888777777665555554 7778888875 45555321
Q ss_pred Cc-cccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccC--cccccCCccccC-CC
Q 002360 690 PR-CINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMN--NFSGEIPVEVTN-LQ 765 (931)
Q Consensus 690 p~-~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N--~l~~~ip~~l~~-l~ 765 (931)
.+ .+ ......++.|+.|+++++ .+++..+..+.. ++
T Consensus 424 ~~~~~----------------------------------------~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~ 463 (592)
T 3ogk_B 424 LDNGV----------------------------------------RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP 463 (592)
T ss_dssp CHHHH----------------------------------------HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT
T ss_pred HHHHH----------------------------------------HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc
Confidence 10 00 001112444577777643 366555544443 67
Q ss_pred CCCEEEccCCcCcc-cCCcCccCcCCCCEEeccCCcCccc-CcccccCCCCCCeeeCCCcccccc
Q 002360 766 GLQSLNLSHNLFTG-RIPDNIGVMRSIESLDFSANQLSGQ-IPQSMSNLSFLNYLNLSNNNLNGE 828 (931)
Q Consensus 766 ~L~~L~Ls~N~l~~-~ip~~l~~l~~L~~LdLs~N~l~~~-~p~~l~~l~~L~~L~ls~N~l~g~ 828 (931)
+|++|+|++|++++ .++..+..+++|++|++++|++++. ++.....+++|++|++++|++++.
T Consensus 464 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 78888888888775 3444456677888888888887655 344445677888888888877654
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=6e-28 Score=259.47 Aligned_cols=224 Identities=23% Similarity=0.273 Sum_probs=169.9
Q ss_pred ccEEECcCCccc-cccCCccc-------CCCCCCEEecCCCcceecCCCcc--cCCCCCCEEEccCCcCccccchhhccC
Q 002360 554 IEFLKLSTNHFS-EGIPDCWM-------NWPRLRTLNLGNNNFTGSLPMSI--GTLTSLRSLNLRNNRLSGVIPTSFKNF 623 (931)
Q Consensus 554 L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p~~~~~l 623 (931)
|+.|++++|+++ ..+|..+. ++++|++|++++|++++.+|..+ ..+++|++|++++|++++. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 777788888774 34454443 57788888888888887777765 7788888888888888876 7777666
Q ss_pred -----CCCcEEecCCCcccccCchhHHhhcCcCcEEEccCcccccc--CCccc--CCCCCcCEEEccCCccccc--cC-c
Q 002360 624 -----SILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGD--FPIQL--CRLASLQILDVAYNSLLGT--IP-R 691 (931)
Q Consensus 624 -----~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~--~p~~l--~~l~~L~~L~Ls~N~l~~~--~p-~ 691 (931)
++|++|++++|++.+..|..+. .+++|++|++++|++.+. .|..+ ..+++|+.|++++|++++. ++ .
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence 7888888888888755445554 688888888888887665 23333 7788888889988888731 11 1
Q ss_pred cccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCC-ccccCCCCCCEE
Q 002360 692 CINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIP-VEVTNLQGLQSL 770 (931)
Q Consensus 692 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip-~~l~~l~~L~~L 770 (931)
.+.+ ++.|+.|||++|++++.+| ..+..+++|++|
T Consensus 223 ~~~~--------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 258 (312)
T 1wwl_A 223 LAAA--------------------------------------------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258 (312)
T ss_dssp HHHT--------------------------------------------TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEE
T ss_pred HHhc--------------------------------------------CCCCCEEECCCCcCCcccchhhhhhcCCCCEE
Confidence 1112 3445889999999988775 456778999999
Q ss_pred EccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCcccccc
Q 002360 771 NLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE 828 (931)
Q Consensus 771 ~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 828 (931)
+|++|+++ .+|..+. ++|++||+++|++++. |. +..+++|++|++++|++++.
T Consensus 259 ~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 259 NLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp ECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred ECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 99999998 8888777 8899999999999876 66 88999999999999998763
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.7e-27 Score=254.98 Aligned_cols=222 Identities=21% Similarity=0.245 Sum_probs=161.8
Q ss_pred CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360 551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD 630 (931)
Q Consensus 551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 630 (931)
+++|+.|++++|++++..+ +..+++|++|++++|++++.. ..++|++|++++|++++..+.. +++|++|+
T Consensus 57 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~ 126 (317)
T 3o53_A 57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIY 126 (317)
T ss_dssp CTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEE
T ss_pred CCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEE
Confidence 4567777777777766443 667777777777777776432 2367777777777777655443 56677777
Q ss_pred cCCCcccccCchhHHhhcCcCcEEEccCccccccCCccc-CCCCCcCEEEccCCccccccCccccccccccccCCCCCCc
Q 002360 631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQL-CRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSS 709 (931)
Q Consensus 631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~ 709 (931)
+++|++++..|..+. .+++|++|++++|.+++..+..+ ..+++|+.|+|++|++++..+. ..
T Consensus 127 l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~-------------- 189 (317)
T 3o53_A 127 LANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VV-------------- 189 (317)
T ss_dssp CCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CC--------------
T ss_pred CCCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc--cc--------------
Confidence 777777754443443 57778888888887777666655 3678888888888887744211 11
Q ss_pred cccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcC
Q 002360 710 DILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR 789 (931)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 789 (931)
++.|+.|+|++|++++ +|..+..+++|++|+|++|+++ .+|..+..++
T Consensus 190 ------------------------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 190 ------------------------------FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp ------------------------------CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred ------------------------------cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence 2335788888888885 4555888999999999999998 6788899999
Q ss_pred CCCEEeccCCcCc-ccCcccccCCCCCCeeeCCC-ccccccCCC
Q 002360 790 SIESLDFSANQLS-GQIPQSMSNLSFLNYLNLSN-NNLNGEIPS 831 (931)
Q Consensus 790 ~L~~LdLs~N~l~-~~~p~~l~~l~~L~~L~ls~-N~l~g~ip~ 831 (931)
+|+.|++++|+++ +.+|..+..++.|+.+++++ +.++|..|.
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 9999999999998 77888899999999999984 467776554
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=3.5e-25 Score=251.37 Aligned_cols=230 Identities=22% Similarity=0.211 Sum_probs=201.0
Q ss_pred cccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCE
Q 002360 525 LGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRS 604 (931)
Q Consensus 525 ~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 604 (931)
.++.+++++|.+.+..+.. +..+++|+.|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADT----FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp TCSEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CccEEECcCCcCceECHHH----cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 4455555555555444332 344789999999999999998899999999999999999999777778999999999
Q ss_pred EEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCc
Q 002360 605 LNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNS 684 (931)
Q Consensus 605 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 684 (931)
|++++|+++...+..|.++++|+.|++++|...+.++...+..+++|++|++++|++++. | .+..+++|+.|+|++|+
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNH 229 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSC
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCc
Confidence 999999999888889999999999999997666688877666899999999999999954 4 57889999999999999
Q ss_pred cccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCC
Q 002360 685 LLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNL 764 (931)
Q Consensus 685 l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l 764 (931)
+++..|..|.++++| +.|+|++|++++..|..|..+
T Consensus 230 l~~~~~~~~~~l~~L--------------------------------------------~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 230 FPEIRPGSFHGLSSL--------------------------------------------KKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp CSEECGGGGTTCTTC--------------------------------------------CEEECTTSCCCEECTTTTTTC
T ss_pred CcccCcccccCccCC--------------------------------------------CEEEeCCCcCceECHHHhcCC
Confidence 998888888877665 899999999999999999999
Q ss_pred CCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCccc
Q 002360 765 QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQ 804 (931)
Q Consensus 765 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ 804 (931)
++|+.|+|++|++++..+..|..+++|+.|+|++|++.+.
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 9999999999999988888899999999999999998754
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.9e-27 Score=254.75 Aligned_cols=269 Identities=19% Similarity=0.208 Sum_probs=211.0
Q ss_pred ccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEE
Q 002360 526 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSL 605 (931)
Q Consensus 526 l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 605 (931)
++..+++.+.+........ ..+++|++|++++|++++..|..|..+++|++|++++|++++..+ +..+++|++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~----~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L 85 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLR----QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL 85 (317)
T ss_dssp EEEESCCTTTHHHHHHHHH----TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred eeEeeccccchhhhHHHHh----ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence 3445555555543332222 235789999999999999888899999999999999999997665 8899999999
Q ss_pred EccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCcc
Q 002360 606 NLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSL 685 (931)
Q Consensus 606 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 685 (931)
++++|.+++.. ..++|++|++++|++++..+. .+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus 86 ~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 86 DLNNNYVQELL-----VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp ECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred ECcCCcccccc-----CCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence 99999998643 348999999999999854433 478999999999999988888899999999999999999
Q ss_pred ccccCcccc-ccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCC
Q 002360 686 LGTIPRCIN-NFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNL 764 (931)
Q Consensus 686 ~~~~p~~~~-~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l 764 (931)
++..|..+. .++. |+.|+|++|++++. | ....+
T Consensus 157 ~~~~~~~~~~~l~~--------------------------------------------L~~L~L~~N~l~~~-~-~~~~l 190 (317)
T 3o53_A 157 DTVNFAELAASSDT--------------------------------------------LEHLNLQYNFIYDV-K-GQVVF 190 (317)
T ss_dssp CEEEGGGGGGGTTT--------------------------------------------CCEEECTTSCCCEE-E-CCCCC
T ss_pred CcccHHHHhhccCc--------------------------------------------CCEEECCCCcCccc-c-ccccc
Confidence 977666553 3333 48999999999865 3 33459
Q ss_pred CCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCcccc-ccCCCC-CccCcccccc
Q 002360 765 QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN-GEIPSS-TQLQSFDASS 842 (931)
Q Consensus 765 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~-g~ip~~-~~~~~~~~~~ 842 (931)
++|++|+|++|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++ +.+|.. ..+..+...+
T Consensus 191 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~ 268 (317)
T 3o53_A 191 AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (317)
T ss_dssp TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred ccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence 999999999999995 5556999999999999999999 57888999999999999999998 444432 2333344444
Q ss_pred cCCC-CCCCCCCCCCC
Q 002360 843 FAGN-DLCGAPLSSCT 857 (931)
Q Consensus 843 ~~~n-~l~~~~~~~c~ 857 (931)
..++ .+.|.+...|.
T Consensus 269 l~~~~~l~~~~~~~~~ 284 (317)
T 3o53_A 269 KQTVKKLTGQNEEECT 284 (317)
T ss_dssp HHHHHHHHSSSSCCCS
T ss_pred CCCchhccCCchhccC
Confidence 4444 44454444443
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=4.5e-25 Score=249.53 Aligned_cols=230 Identities=23% Similarity=0.257 Sum_probs=199.6
Q ss_pred cccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCE
Q 002360 525 LGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRS 604 (931)
Q Consensus 525 ~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 604 (931)
.++.+++++|++.+..+.. +..+++|++|+|++|+++++.+..|.++++|++|+|++|++++..+..|..+++|++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp TCSEEECCSCCCCEECTTT----TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred CCcEEEccCCcCCeeCHHH----hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCce
Confidence 3445555555554443322 345789999999999999988889999999999999999999777778999999999
Q ss_pred EEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCc
Q 002360 605 LNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNS 684 (931)
Q Consensus 605 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 684 (931)
|++++|.++...+..|..+++|+.|++++|+..+.++...+..+++|++|++++|+++ .+| .+..+++|+.|+|++|+
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNH 218 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSC
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCc
Confidence 9999999998888899999999999999976666788766668999999999999998 455 47889999999999999
Q ss_pred cccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCC
Q 002360 685 LLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNL 764 (931)
Q Consensus 685 l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l 764 (931)
+++..|..|.++++| +.|+|++|++++..+..|.++
T Consensus 219 l~~~~~~~~~~l~~L--------------------------------------------~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 219 LSAIRPGSFQGLMHL--------------------------------------------QKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp CCEECTTTTTTCTTC--------------------------------------------CEEECTTCCCCEECTTSSTTC
T ss_pred cCccChhhhccCccC--------------------------------------------CEEECCCCceeEEChhhhcCC
Confidence 998888888877665 899999999999999999999
Q ss_pred CCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCccc
Q 002360 765 QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQ 804 (931)
Q Consensus 765 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ 804 (931)
++|++|+|++|++++..+..|..+++|+.|+|++|++...
T Consensus 255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 9999999999999988888899999999999999998754
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=4.2e-27 Score=252.81 Aligned_cols=246 Identities=20% Similarity=0.292 Sum_probs=206.5
Q ss_pred CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcce-ecCCCccc-------CCCCCCEEEccCCcCccccchhh--
Q 002360 551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFT-GSLPMSIG-------TLTSLRSLNLRNNRLSGVIPTSF-- 620 (931)
Q Consensus 551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~~~-- 620 (931)
.++|+.|++++|.+ .+|..+... |+.|++++|.+. ..+|..+. ++++|++|++++|++++..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 45789999999999 567655543 999999999995 45666554 68999999999999999999876
Q ss_pred ccCCCCcEEecCCCcccccCchhHHhhc-----CcCcEEEccCccccccCCcccCCCCCcCEEEccCCcccccc--Cccc
Q 002360 621 KNFSILEALDVGENELVGSIPTWIGERF-----SRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTI--PRCI 693 (931)
Q Consensus 621 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--p~~~ 693 (931)
..+++|++|++++|++++. |..+. .+ ++|++|++++|++.+..|..+..+++|+.|++++|++.+.+ |..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred hcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 8999999999999999965 77665 56 89999999999999888899999999999999999987653 2222
Q ss_pred --cccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccc--cCC-ccccCCCCCC
Q 002360 694 --NNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSG--EIP-VEVTNLQGLQ 768 (931)
Q Consensus 694 --~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~--~ip-~~l~~l~~L~ 768 (931)
.++ +.|+.|+|++|++++ .++ ..+..+++|+
T Consensus 196 ~~~~l--------------------------------------------~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~ 231 (312)
T 1wwl_A 196 CPLKF--------------------------------------------PTLQVLALRNAGMETPSGVCSALAAARVQLQ 231 (312)
T ss_dssp CTTSC--------------------------------------------TTCCEEECTTSCCCCHHHHHHHHHHTTCCCS
T ss_pred HhccC--------------------------------------------CCCCEEECCCCcCcchHHHHHHHHhcCCCCC
Confidence 333 345899999999983 233 3456889999
Q ss_pred EEEccCCcCcccCC-cCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCCCCccCcccccccCCCC
Q 002360 769 SLNLSHNLFTGRIP-DNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGND 847 (931)
Q Consensus 769 ~L~Ls~N~l~~~ip-~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~ 847 (931)
+|+|++|++++.+| ..+..+++|++|+|++|+++ .+|..+. ++|++||+++|++++. |....+..+...++.+|.
T Consensus 232 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp EEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCT
T ss_pred EEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCC
Confidence 99999999998886 55777999999999999999 8888777 8999999999999987 766677788888899997
Q ss_pred CCC
Q 002360 848 LCG 850 (931)
Q Consensus 848 l~~ 850 (931)
+.+
T Consensus 308 l~~ 310 (312)
T 1wwl_A 308 FLD 310 (312)
T ss_dssp TTC
T ss_pred CCC
Confidence 765
No 66
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=9.9e-26 Score=247.15 Aligned_cols=282 Identities=21% Similarity=0.197 Sum_probs=182.0
Q ss_pred ccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCCC
Q 002360 92 LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLE 171 (931)
Q Consensus 92 l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~ 171 (931)
++...+.+.+++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+..++... +.++++|+
T Consensus 30 C~~~~~c~~~~~~l~--~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~ 103 (353)
T 2z80_A 30 CDRNGICKGSSGSLN--SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS--FSSLGSLE 103 (353)
T ss_dssp ECTTSEEECCSTTCS--SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT--TTTCTTCC
T ss_pred CCCCeEeeCCCCCcc--ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh--cCCCCCCC
Confidence 344445666666666 3455443 46777777777776555556777777777777776665543322 45556666
Q ss_pred eEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCc-cccCCCCCCCEEEccCC-cCCCCCcccccCCCCCCEEEc
Q 002360 172 HLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL-LSSANFSSLTTLDLSGN-QFQGQIPSRLGNLTSLKHLDL 249 (931)
Q Consensus 172 ~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L 249 (931)
+|++++|.++.++. ..+..+++|++|++++|.+..++. ..+.++++|++|++++| .+....+..++.+++|++|++
T Consensus 104 ~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 104 HLDLSYNYLSNLSS--SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp EEECCSSCCSSCCH--HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred EEECCCCcCCcCCH--hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence 66666666655433 235677788888888888877776 56777788888888877 355455566777777777777
Q ss_pred CCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEEcCCCcCC
Q 002360 250 YSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLS 329 (931)
Q Consensus 250 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 329 (931)
++|++.+..|..+..+++|++|++++|.+. .++...+..+++|++|++++| .+.+..+..+..
T Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~--------------- 244 (353)
T 2z80_A 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDT-DLDTFHFSELST--------------- 244 (353)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESC-BCTTCCCC-------------------
T ss_pred CCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCC-cccccccccccc---------------
Confidence 777777777777777777777777777764 444433445666666666666 444433222111
Q ss_pred CcchhhhhhcccccccCccEEEcCCccccc----ccccccCCCCCCCEEeccCCcCCcCcccc-ccCCCCCCEEEccCCc
Q 002360 330 QDISEILGIFSGCVAYELESLYLRGCQIFG----HLTNQLGQFKRLNFLGLSNNQMDGSIPLS-LGQMANLESLDLSNNK 404 (931)
Q Consensus 330 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~ 404 (931)
.. ....++.++++++.+.+ .+|.++..+++|++|++++|.+.. +|.. |..+++|++|++++|+
T Consensus 245 ---------~~--~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 245 ---------GE--TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp -------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred ---------cc--ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCC
Confidence 00 01445666666666554 356667788888999998888884 4444 5788889999999998
Q ss_pred CCCccc
Q 002360 405 LNGTVS 410 (931)
Q Consensus 405 l~~~~~ 410 (931)
+.+..+
T Consensus 313 ~~~~~~ 318 (353)
T 2z80_A 313 WDCSCP 318 (353)
T ss_dssp BCCCHH
T ss_pred ccCcCC
Confidence 877654
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.2e-25 Score=256.17 Aligned_cols=218 Identities=20% Similarity=0.198 Sum_probs=173.8
Q ss_pred CCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEE
Q 002360 550 FSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEAL 629 (931)
Q Consensus 550 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 629 (931)
.+++|+.|++++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 34578888888888888777888888888899998888887665 7888888899998888886443 3788888
Q ss_pred ecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCcccc-ccccccccCCCCCC
Q 002360 630 DVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCIN-NFSAMATADSSDQS 708 (931)
Q Consensus 630 ~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~~~~~~~~ 708 (931)
++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|+|++|.+++..|..+. .++.|
T Consensus 105 ~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L--------- 171 (487)
T 3oja_A 105 HAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL--------- 171 (487)
T ss_dssp ECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC---------
T ss_pred ECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc---------
Confidence 9998888854442 467888899999988888888888888899999999988887776664 44443
Q ss_pred ccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCc
Q 002360 709 SDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVM 788 (931)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l 788 (931)
+.|+|++|.+++..+ ...+++|++|+|++|++++..| .++.+
T Consensus 172 -----------------------------------~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l 213 (487)
T 3oja_A 172 -----------------------------------EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSA 213 (487)
T ss_dssp -----------------------------------CEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGG
T ss_pred -----------------------------------cEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCC
Confidence 788888888886532 3458888888888888885444 48888
Q ss_pred CCCCEEeccCCcCcccCcccccCCCCCCeeeCCCcccc
Q 002360 789 RSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN 826 (931)
Q Consensus 789 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 826 (931)
++|+.|||++|.+++ +|..+..+++|+.|++++|++.
T Consensus 214 ~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 214 AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred CCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 888888888888885 6777888888888888888887
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=8.6e-25 Score=230.71 Aligned_cols=210 Identities=20% Similarity=0.226 Sum_probs=146.6
Q ss_pred CCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEc
Q 002360 577 RLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILIL 656 (931)
Q Consensus 577 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L 656 (931)
+|++|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|++++..+..+. .+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc-CCccccEEEC
Confidence 566666666666655555566666666666666666655555666666666666666666643333333 5666666666
Q ss_pred cCccccccCCcccCCCCCcCEEEccCCccccc-cCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhh
Q 002360 657 RSNKFHGDFPIQLCRLASLQILDVAYNSLLGT-IPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVE 735 (931)
Q Consensus 657 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (931)
++|.+.+..+..+..+++|+.|++++|++.+. +|..+.++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L------------------------------------ 151 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL------------------------------------ 151 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC------------------------------------
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC------------------------------------
Confidence 66666665555667777777777777777653 46666655554
Q ss_pred hhhhccceeEEEcccCcccccCCccccCCCCCC----EEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccC
Q 002360 736 YNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQ----SLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN 811 (931)
Q Consensus 736 ~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~----~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~ 811 (931)
+.|+|++|++++..+..+..+++|+ +|++++|++++..+..+. ..+|+.|++++|++++..+..+..
T Consensus 152 --------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~ 222 (276)
T 2z62_A 152 --------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDR 222 (276)
T ss_dssp --------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTT
T ss_pred --------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcc
Confidence 6777777777776666776666666 889999999865555544 448999999999999777777888
Q ss_pred CCCCCeeeCCCccccccCCCC
Q 002360 812 LSFLNYLNLSNNNLNGEIPSS 832 (931)
Q Consensus 812 l~~L~~L~ls~N~l~g~ip~~ 832 (931)
+++|+.|++++|+++|.+|..
T Consensus 223 l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 223 LTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CCSCCEEECCSSCBCCCTTTT
T ss_pred cccccEEEccCCcccccCCch
Confidence 999999999999999988754
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.5e-24 Score=249.73 Aligned_cols=203 Identities=26% Similarity=0.288 Sum_probs=130.4
Q ss_pred CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360 551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD 630 (931)
Q Consensus 551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 630 (931)
+++|++|++++|++++. |. .+++|+.|++++|++++ +|.. +++|++|++++|++++. |. .+++|+.|+
T Consensus 100 l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~ 167 (622)
T 3g06_A 100 PPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLW 167 (622)
T ss_dssp CTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEE
T ss_pred CCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEE
Confidence 45666777777766653 32 34567777777777663 4433 36677777777776643 32 245677777
Q ss_pred cCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcc
Q 002360 631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSD 710 (931)
Q Consensus 631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 710 (931)
+++|+++ .+| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++ .+|..
T Consensus 168 L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~------------------ 219 (622)
T 3g06_A 168 AYNNQLT-SLP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL------------------ 219 (622)
T ss_dssp CCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC------------------
T ss_pred CCCCCCC-CCc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC------------------
Confidence 7777776 455 145677777777777764 3332 356777777777766 33321
Q ss_pred ccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCC
Q 002360 711 ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS 790 (931)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 790 (931)
++.|+.|+|++|++++ +| ..+++|+.|+|++|+|+ .+|. .+++
T Consensus 220 -----------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~ 262 (622)
T 3g06_A 220 -----------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSG 262 (622)
T ss_dssp -----------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTT
T ss_pred -----------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---cccc
Confidence 1224677777777774 45 44567777777777777 5555 4567
Q ss_pred CCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCC
Q 002360 791 IESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS 831 (931)
Q Consensus 791 L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 831 (931)
|+.|+|++|+++ .+|..+.++++|+.|+|++|+++|.+|.
T Consensus 263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 777777777777 6677777777777777777777776654
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.4e-25 Score=255.55 Aligned_cols=212 Identities=21% Similarity=0.225 Sum_probs=170.5
Q ss_pred CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360 551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD 630 (931)
Q Consensus 551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 630 (931)
+++|+.|+|++|.+++..| +..+++|++|++++|.+++..+ .++|++|++++|.+++..+. .+++|+.|+
T Consensus 57 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~ 126 (487)
T 3oja_A 57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIY 126 (487)
T ss_dssp CTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCCCEEEC---CCSSCEEEE
T ss_pred CCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCCcCCCCCcc---ccCCCCEEE
Confidence 5677888888888877555 7778888888888888875432 37888888888888876654 357788888
Q ss_pred cCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccC-CCCCcCEEEccCCccccccCccccccccccccCCCCCCc
Q 002360 631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLC-RLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSS 709 (931)
Q Consensus 631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~ 709 (931)
+++|.+++..|..+. .+++|+.|++++|.+++..|..+. .+++|+.|+|++|.+++..+. ..
T Consensus 127 L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~--~~-------------- 189 (487)
T 3oja_A 127 LANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VV-------------- 189 (487)
T ss_dssp CCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CC--------------
T ss_pred CCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc--cc--------------
Confidence 888888866666665 688888888888888887777775 688999999999998865322 12
Q ss_pred cccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcC
Q 002360 710 DILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR 789 (931)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 789 (931)
++.|+.|+|++|.+++. |+.+..+++|+.|+|++|.+++ +|..++.++
T Consensus 190 ------------------------------l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~ 237 (487)
T 3oja_A 190 ------------------------------FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQ 237 (487)
T ss_dssp ------------------------------CTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCT
T ss_pred ------------------------------CCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCC
Confidence 23458899999999965 4459999999999999999994 788899999
Q ss_pred CCCEEeccCCcCc-ccCcccccCCCCCCeeeCC
Q 002360 790 SIESLDFSANQLS-GQIPQSMSNLSFLNYLNLS 821 (931)
Q Consensus 790 ~L~~LdLs~N~l~-~~~p~~l~~l~~L~~L~ls 821 (931)
+|+.|++++|+++ +.+|..+..++.|+.++++
T Consensus 238 ~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 9999999999999 7788899999999999887
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.1e-24 Score=250.38 Aligned_cols=188 Identities=27% Similarity=0.379 Sum_probs=141.1
Q ss_pred CCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEec
Q 002360 552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDV 631 (931)
Q Consensus 552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 631 (931)
++|+.|++++|++++ +|.. +++|++|++++|++++ +|. .+++|+.|++++|.+++ +| ..+++|+.|++
T Consensus 121 ~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~L 188 (622)
T 3g06_A 121 SGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSV 188 (622)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEEC
T ss_pred CCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEEC
Confidence 456677777777665 3332 3677777777777773 343 24577788888888775 34 44677888888
Q ss_pred CCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccc
Q 002360 632 GENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDI 711 (931)
Q Consensus 632 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 711 (931)
++|+++ .+|. .+++|+.|++++|.++ .+|.. +++|+.|++++|++++ +|. .
T Consensus 189 s~N~l~-~l~~----~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp~---~---------------- 239 (622)
T 3g06_A 189 SDNQLA-SLPT----LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPV---L---------------- 239 (622)
T ss_dssp CSSCCS-CCCC----CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCC---C----------------
T ss_pred CCCCCC-CCCC----ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CCC---C----------------
Confidence 888887 4664 3567888888888887 34432 4788999999998875 442 1
Q ss_pred cccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCC
Q 002360 712 LYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI 791 (931)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L 791 (931)
++.|+.|+|++|+++ .+|. .+++|+.|+|++|+|+ .+|..++.+++|
T Consensus 240 ----------------------------l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L 286 (622)
T 3g06_A 240 ----------------------------PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSE 286 (622)
T ss_dssp ----------------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTT
T ss_pred ----------------------------CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhcccc
Confidence 223488999999998 5665 6789999999999999 889999999999
Q ss_pred CEEeccCCcCcccCcccccCCC
Q 002360 792 ESLDFSANQLSGQIPQSMSNLS 813 (931)
Q Consensus 792 ~~LdLs~N~l~~~~p~~l~~l~ 813 (931)
+.|+|++|++++.+|..+..++
T Consensus 287 ~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 287 TTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CEEECCSCCCCHHHHHHHHHHH
T ss_pred CEEEecCCCCCCcCHHHHHhcc
Confidence 9999999999999998887765
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=8.3e-24 Score=222.08 Aligned_cols=206 Identities=20% Similarity=0.258 Sum_probs=132.5
Q ss_pred ccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCC
Q 002360 554 IEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGE 633 (931)
Q Consensus 554 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 633 (931)
.+.+++++++++. +|..+. ++++.|++++|++++..+..|.++++|++|++++|.++...+..|.+
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~----------- 83 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE----------- 83 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSS-----------
T ss_pred CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcC-----------
Confidence 4555555555554 333222 34555555555555444444555555555555555554433333444
Q ss_pred CcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccc
Q 002360 634 NELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILY 713 (931)
Q Consensus 634 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~ 713 (931)
+++|++|++++|++++..+..+..+++|+.|++++|++++..|..|.++++|
T Consensus 84 --------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------- 135 (270)
T 2o6q_A 84 --------------LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL-------------- 135 (270)
T ss_dssp --------------CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred --------------CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC--------------
Confidence 4555555555555554444445556666666666666665555555544443
Q ss_pred cccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCE
Q 002360 714 AFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIES 793 (931)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~ 793 (931)
+.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++
T Consensus 136 ------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 185 (270)
T 2o6q_A 136 ------------------------------TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185 (270)
T ss_dssp ------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred ------------------------------CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence 66777777777555556788888999999999988777777888999999
Q ss_pred EeccCCcCcccCcccccCCCCCCeeeCCCccccccCCC
Q 002360 794 LDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS 831 (931)
Q Consensus 794 LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 831 (931)
|++++|++++..+..+..+++|+.|++++|++.+..+.
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred EECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 99999999877777788889999999999999887653
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=9.7e-24 Score=222.62 Aligned_cols=213 Identities=20% Similarity=0.207 Sum_probs=185.3
Q ss_pred CCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEec
Q 002360 552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDV 631 (931)
Q Consensus 552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 631 (931)
+++++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 57999999999999988889999999999999999999888888999999999999999999988899999999999999
Q ss_pred CCCcccccCchhHHhhcCcCcEEEccCcccccc-CCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcc
Q 002360 632 GENELVGSIPTWIGERFSRLMILILRSNKFHGD-FPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSD 710 (931)
Q Consensus 632 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 710 (931)
++|.+.+..+..+. .+++|++|++++|.+++. +|..+..+++|+.|++++|++++..+..+..+..++.+
T Consensus 108 ~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l-------- 178 (276)
T 2z62_A 108 VETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL-------- 178 (276)
T ss_dssp TTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC--------
T ss_pred CCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc--------
Confidence 99999854443444 799999999999999874 68999999999999999999998877777776665321
Q ss_pred ccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCC
Q 002360 711 ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS 790 (931)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 790 (931)
...|++++|++++..+..+. ..+|++|+|++|++++..+..|+.+++
T Consensus 179 --------------------------------~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~ 225 (276)
T 2z62_A 179 --------------------------------NLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTS 225 (276)
T ss_dssp --------------------------------CEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCS
T ss_pred --------------------------------ceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhccccc
Confidence 02799999999966555554 458999999999999777777899999
Q ss_pred CCEEeccCCcCcccCc
Q 002360 791 IESLDFSANQLSGQIP 806 (931)
Q Consensus 791 L~~LdLs~N~l~~~~p 806 (931)
|+.|++++|++++..|
T Consensus 226 L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 226 LQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCEEECCSSCBCCCTT
T ss_pred ccEEEccCCcccccCC
Confidence 9999999999997654
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=2e-26 Score=272.49 Aligned_cols=160 Identities=13% Similarity=0.077 Sum_probs=99.9
Q ss_pred cCCCCcEEecCCCcccccCchhHHhhcCcCcEEEcc--C----cccccc-----CCcccCCCCCcCEEEccCCccccccC
Q 002360 622 NFSILEALDVGENELVGSIPTWIGERFSRLMILILR--S----NKFHGD-----FPIQLCRLASLQILDVAYNSLLGTIP 690 (931)
Q Consensus 622 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~--~----n~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~~~~p 690 (931)
++++|+.|+++.|.+++..+..+...+++|+.|+++ + +.++.. ++..+..+++|+.|++++ .+++..+
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 467777777777777665555555557777777777 3 334311 112245567788888866 5543333
Q ss_pred ccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccc-cCCCCCCE
Q 002360 691 RCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEV-TNLQGLQS 769 (931)
Q Consensus 691 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l-~~l~~L~~ 769 (931)
..+.. .++.|+.|+|++|.+++..+..+ ..+++|++
T Consensus 449 ~~l~~-------------------------------------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~ 485 (594)
T 2p1m_B 449 EYIGT-------------------------------------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK 485 (594)
T ss_dssp HHHHH-------------------------------------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCE
T ss_pred HHHHH-------------------------------------------hchhccEeeccCCCCcHHHHHHHHhcCCCcCE
Confidence 22221 13345788888888876555554 66888888
Q ss_pred EEccCCcCcccCCc-CccCcCCCCEEeccCCcCcccCcccc-cCCCCCCeeeCCCccc
Q 002360 770 LNLSHNLFTGRIPD-NIGVMRSIESLDFSANQLSGQIPQSM-SNLSFLNYLNLSNNNL 825 (931)
Q Consensus 770 L~Ls~N~l~~~ip~-~l~~l~~L~~LdLs~N~l~~~~p~~l-~~l~~L~~L~ls~N~l 825 (931)
|+|++|.+++..+. .+..+++|+.|++++|+++......+ ..++.|+...+..+.-
T Consensus 486 L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 486 LEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp EEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred EECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 88888888654443 34457888888888888865444444 4556666655555543
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2.7e-23 Score=219.89 Aligned_cols=205 Identities=20% Similarity=0.255 Sum_probs=137.6
Q ss_pred cCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCc
Q 002360 573 MNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLM 652 (931)
Q Consensus 573 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~ 652 (931)
.++++++++++++|.++ .+|..+. +++++|++++|.+++..+..|.++++|+.|++++|.+++ ++.. ..+++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~--~~l~~L~ 80 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD--GTLPVLG 80 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC--SCCTTCC
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC--CCCCcCC
Confidence 34555566666666555 3444432 456666666666665555666666666666666666653 3332 2566677
Q ss_pred EEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecc
Q 002360 653 ILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGF 732 (931)
Q Consensus 653 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (931)
+|++++|+++ .+|..+..+++|+.|++++|++++..|..|.++++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L--------------------------------- 126 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL--------------------------------- 126 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC---------------------------------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC---------------------------------
Confidence 7777777666 456666677777777777777776555666655554
Q ss_pred hhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCC
Q 002360 733 LVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNL 812 (931)
Q Consensus 733 ~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l 812 (931)
+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..+
T Consensus 127 -----------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~ 194 (290)
T 1p9a_G 127 -----------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS 194 (290)
T ss_dssp -----------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred -----------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhccc
Confidence 67777777777666666777888888888888888555556677888888888888887 667777777
Q ss_pred CCCCeeeCCCccccccC
Q 002360 813 SFLNYLNLSNNNLNGEI 829 (931)
Q Consensus 813 ~~L~~L~ls~N~l~g~i 829 (931)
+.|+.+++++|++.|..
T Consensus 195 ~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 195 HLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCCSEEECCSCCBCCSG
T ss_pred ccCCeEEeCCCCccCcC
Confidence 78888888888887653
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=4e-26 Score=269.86 Aligned_cols=388 Identities=13% Similarity=0.089 Sum_probs=231.4
Q ss_pred cCccEEEcCCcccccccccccC-CCCCCCEEeccCC-cCCcC-ccccccCCCCCCEEEccCCcCCCccchhhhccccccc
Q 002360 345 YELESLYLRGCQIFGHLTNQLG-QFKRLNFLGLSNN-QMDGS-IPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLV 421 (931)
Q Consensus 345 ~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 421 (931)
++|++|++++|.+++..+..+. .+++|++|++++| .+... ++.....+++|++|++++|.+++..+. .+..
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~-~l~~----- 178 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGH-WLSH----- 178 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGG-GGGG-----
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchH-HHHH-----
Confidence 4566666666655544444343 4556666666665 23221 222333556666666666654432211 1111
Q ss_pred eeccCCceeEEecCCCCCCCccccEEEccCCC--CCC-CcChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEec
Q 002360 422 SFLANANSLIFKINPNWVPPFQLTVLELRSCH--LGP-RFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNV 498 (931)
Q Consensus 422 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~--l~~-~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l 498 (931)
....+++|+.|++++|. +.. .++.....+++|+.|++++|...+.++. ....+++|++|++
T Consensus 179 ---------------~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~l 242 (594)
T 2p1m_B 179 ---------------FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGT 242 (594)
T ss_dssp ---------------SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH-HHHHCTTCSEEEC
T ss_pred ---------------HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH-HHhcCCcceEccc
Confidence 01123455555555554 110 1222234568888888888732222332 3344567777765
Q ss_pred cCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEE-ECcCCccccccCCcccCCCC
Q 002360 499 SGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFL-KLSTNHFSEGIPDCWMNWPR 577 (931)
Q Consensus 499 s~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L-~Ls~n~l~~~~~~~~~~l~~ 577 (931)
+.+.. ++..+.+.+ +...+..+++|+.| .+.+... +.++..+..+++
T Consensus 243 ~~~~~--------------------------~~~~~~~~~-----l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~ 290 (594)
T 2p1m_B 243 GGYTA--------------------------EVRPDVYSG-----LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSR 290 (594)
T ss_dssp SBCCC--------------------------CCCHHHHHH-----HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTT
T ss_pred ccccC--------------------------ccchhhHHH-----HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCC
Confidence 54321 011111111 11223446788888 4443332 234444556788
Q ss_pred CCEEecCCCcceecC-CCcccCCCCCCEEEccCCcCcc-ccchhhccCCCCcEEec---------CCCcccccCchhHHh
Q 002360 578 LRTLNLGNNNFTGSL-PMSIGTLTSLRSLNLRNNRLSG-VIPTSFKNFSILEALDV---------GENELVGSIPTWIGE 646 (931)
Q Consensus 578 L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L---------~~N~l~~~~p~~~~~ 646 (931)
|++|++++|.+++.. +..+..+++|++|++++| +.. .++.....+++|+.|++ +.+.+++.....+..
T Consensus 291 L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~ 369 (594)
T 2p1m_B 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM 369 (594)
T ss_dssp CCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH
T ss_pred CCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH
Confidence 999999999876432 223557889999999988 432 23333346888999988 335565544445555
Q ss_pred hcCcCcEEEccCccccccCCcccC-CCCCcCEEEcc--C----CccccccCccccccccccccCCCCCCccccccccCCC
Q 002360 647 RFSRLMILILRSNKFHGDFPIQLC-RLASLQILDVA--Y----NSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDN 719 (931)
Q Consensus 647 ~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls--~----N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~ 719 (931)
.+++|+.|.+..|.+++..+..+. .+++|+.|+++ + |.+++...+.
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~--------------------------- 422 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI--------------------------- 422 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH---------------------------
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh---------------------------
Confidence 688999998888888876555554 47899999998 3 3443111000
Q ss_pred ccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccC-CCCCCEEEccCCcCcccCCcCc-cCcCCCCEEecc
Q 002360 720 KIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTN-LQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFS 797 (931)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~-l~~L~~L~Ls~N~l~~~ip~~l-~~l~~L~~LdLs 797 (931)
........++.|+.|+|++ .+++..+..+.. +++|++|+|++|.+++..+..+ ..+++|+.|+++
T Consensus 423 ------------~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~ 489 (594)
T 2p1m_B 423 ------------GFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR 489 (594)
T ss_dssp ------------HHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEE
T ss_pred ------------HHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECc
Confidence 0001122355679999987 777766666665 8999999999999987655555 668999999999
Q ss_pred CCcCcccCcc-cccCCCCCCeeeCCCccccc
Q 002360 798 ANQLSGQIPQ-SMSNLSFLNYLNLSNNNLNG 827 (931)
Q Consensus 798 ~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~g 827 (931)
+|++++..+. ....+++|++|++++|+++.
T Consensus 490 ~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 490 DCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp SCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred CCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 9999766554 44568999999999998853
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=5.5e-24 Score=223.57 Aligned_cols=222 Identities=18% Similarity=0.234 Sum_probs=175.2
Q ss_pred CccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecC
Q 002360 553 NIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVG 632 (931)
Q Consensus 553 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 632 (931)
.+..+++..+.+.+.. .+..+++|+.|++++|.+.. + ..+..+++|++|++++|.+++. ..+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 3445556666655533 24556788888888888773 3 3577788888888888888763 367788888888888
Q ss_pred CCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcccc
Q 002360 633 ENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDIL 712 (931)
Q Consensus 633 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~ 712 (931)
+|.+++ ++...+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..+++|
T Consensus 94 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------------- 159 (272)
T 3rfs_A 94 GNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL------------- 159 (272)
T ss_dssp TSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred CCccCc-cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC-------------
Confidence 888884 444433478888888888888887777778888999999999999887666666665555
Q ss_pred ccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCC
Q 002360 713 YAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE 792 (931)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 792 (931)
+.|++++|++++..+..++.+++|++|++++|++++..|..++.+++|+
T Consensus 160 -------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 160 -------------------------------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp -------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred -------------------------------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 7899999999987777789999999999999999988888889999999
Q ss_pred EEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCCC
Q 002360 793 SLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS 832 (931)
Q Consensus 793 ~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 832 (931)
.|++++|++++.. +.|+.+++++|.++|.+|..
T Consensus 209 ~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 209 YIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp EEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCT
T ss_pred EEEccCCCccccC-------cHHHHHHHHHHhCCCcccCc
Confidence 9999999988654 46888999999999999974
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1e-22 Score=213.80 Aligned_cols=206 Identities=19% Similarity=0.234 Sum_probs=152.6
Q ss_pred ccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCC
Q 002360 524 LLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLR 603 (931)
Q Consensus 524 ~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 603 (931)
...+.++++++.++. +|..+ .++++.|++++|++++..+..|.++++|++|++++|++++..+..|..+++|+
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~ 88 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNI------PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCC------CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCC
T ss_pred CCCCEEEccCCCCCc-cCCCC------CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCC
Confidence 457899999999985 44333 35799999999999998888999999999999999999966666788999999
Q ss_pred EEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCC
Q 002360 604 SLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYN 683 (931)
Q Consensus 604 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 683 (931)
+|++++|++++..+..|.++++|++|++++|++++ +|...+..+++|++|++++|.+++..+..+..+++|
T Consensus 89 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------- 159 (270)
T 2o6q_A 89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL-------- 159 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------
T ss_pred EEECCCCcCCcCCHhHcccccCCCEEECCCCccCe-eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc--------
Confidence 99999999998777777788888888888887773 333222245555555555555543333334444444
Q ss_pred ccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccC
Q 002360 684 SLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTN 763 (931)
Q Consensus 684 ~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~ 763 (931)
+.|+|++|++++..+..|..
T Consensus 160 ------------------------------------------------------------~~L~L~~n~l~~~~~~~~~~ 179 (270)
T 2o6q_A 160 ------------------------------------------------------------KELRLYNNQLKRVPEGAFDK 179 (270)
T ss_dssp ------------------------------------------------------------CEEECCSSCCSCCCTTTTTT
T ss_pred ------------------------------------------------------------ceeEecCCcCcEeChhHhcc
Confidence 45555555555444555777
Q ss_pred CCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccC
Q 002360 764 LQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI 805 (931)
Q Consensus 764 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~ 805 (931)
+++|++|+|++|++++..+..|..+++|+.|++++|++.+.-
T Consensus 180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 180 LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 788888888888888666667888888888888888887553
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=6.7e-25 Score=243.73 Aligned_cols=243 Identities=15% Similarity=0.209 Sum_probs=193.7
Q ss_pred hhccCCCCCCccEEECcCCcccccc----CCcccCCCCCCEEecCCC---cceecCCCcc-------cCCCCCCEEEccC
Q 002360 544 ICQGENFSKNIEFLKLSTNHFSEGI----PDCWMNWPRLRTLNLGNN---NFTGSLPMSI-------GTLTSLRSLNLRN 609 (931)
Q Consensus 544 ~~~~~~~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n---~l~~~~p~~~-------~~l~~L~~L~L~~ 609 (931)
++..+..+++|+.|++++|++++.. +..+..+++|++|+|++| ++.+.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3334445788999999999988753 345778899999999996 4445556554 6889999999999
Q ss_pred CcCcc----ccchhhccCCCCcEEecCCCcccccCchhHHh---hc---------CcCcEEEccCcccc-ccCC---ccc
Q 002360 610 NRLSG----VIPTSFKNFSILEALDVGENELVGSIPTWIGE---RF---------SRLMILILRSNKFH-GDFP---IQL 669 (931)
Q Consensus 610 n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~---~l---------~~L~~L~L~~n~l~-~~~p---~~l 669 (931)
|.+.. .+|..+..+++|++|+|++|.+.+..+..+.. .+ ++|++|++++|+++ +.+| ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 99987 47788899999999999999997554444432 23 89999999999997 3444 466
Q ss_pred CCCCCcCEEEccCCcccc-----ccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhcccee
Q 002360 670 CRLASLQILDVAYNSLLG-----TIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVR 744 (931)
Q Consensus 670 ~~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 744 (931)
..+++|+.|++++|+++. ..|..+..++ .|+
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~--------------------------------------------~L~ 219 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ--------------------------------------------ELK 219 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT--------------------------------------------TCC
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC--------------------------------------------Ccc
Confidence 788999999999999872 2332444443 458
Q ss_pred EEEcccCccc----ccCCccccCCCCCCEEEccCCcCccc----CCcCc--cCcCCCCEEeccCCcCcc----cCcccc-
Q 002360 745 SIDISMNNFS----GEIPVEVTNLQGLQSLNLSHNLFTGR----IPDNI--GVMRSIESLDFSANQLSG----QIPQSM- 809 (931)
Q Consensus 745 ~LdLs~N~l~----~~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l--~~l~~L~~LdLs~N~l~~----~~p~~l- 809 (931)
.|+|++|.++ +.+|..+..+++|++|+|++|++++. +|..+ +.+++|+.|+|++|.+++ .+|..+
T Consensus 220 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~ 299 (386)
T 2ca6_A 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299 (386)
T ss_dssp EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH
T ss_pred EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH
Confidence 9999999996 67888999999999999999999876 56666 348999999999999998 588887
Q ss_pred cCCCCCCeeeCCCccccccCC
Q 002360 810 SNLSFLNYLNLSNNNLNGEIP 830 (931)
Q Consensus 810 ~~l~~L~~L~ls~N~l~g~ip 830 (931)
.++++|++|++++|++++..|
T Consensus 300 ~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 300 EKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHCTTCCEEECTTSBSCTTSH
T ss_pred hcCCCceEEEccCCcCCcchh
Confidence 668999999999999998765
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=3.5e-24 Score=235.27 Aligned_cols=259 Identities=17% Similarity=0.181 Sum_probs=193.5
Q ss_pred EEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccC----CcccCCC-CCCEEecCCCcceecCCCcccCC---
Q 002360 528 IFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIP----DCWMNWP-RLRTLNLGNNNFTGSLPMSIGTL--- 599 (931)
Q Consensus 528 ~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l--- 599 (931)
+++++.|.+++.+|..+.. .++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~----~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSI----PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77 (362)
T ss_dssp EEECCCCTTCCHHHHHHTS----CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred ccccccccchHHHHHHHhC----CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence 3566777777776655432 5669999999999988666 6777888 89999999999987766666654
Q ss_pred --CCCCEEEccCCcCccccchhhcc----C-CCCcEEecCCCcccccCchhHHhh----cCcCcEEEccCccccccC---
Q 002360 600 --TSLRSLNLRNNRLSGVIPTSFKN----F-SILEALDVGENELVGSIPTWIGER----FSRLMILILRSNKFHGDF--- 665 (931)
Q Consensus 600 --~~L~~L~L~~n~l~~~~p~~~~~----l-~~L~~L~L~~N~l~~~~p~~~~~~----l~~L~~L~L~~n~l~~~~--- 665 (931)
++|++|++++|.+++..+..+.. + ++|++|++++|++++..+..+... .++|++|++++|.+++..
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 89999999999998777765443 4 899999999999986555554422 368999999999998543
Q ss_pred -CcccCCCC-CcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhc-cc
Q 002360 666 -PIQLCRLA-SLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSIL-NL 742 (931)
Q Consensus 666 -p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 742 (931)
+..+..++ +|+.|+|++|++++..+..+...- ... +.
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l----------------------------------------~~~~~~ 197 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFL----------------------------------------ASIPAS 197 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH----------------------------------------HTSCTT
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHH----------------------------------------HhCCCC
Confidence 34445555 899999999999876665443220 112 24
Q ss_pred eeEEEcccCccccc----CCccccC-CCCCCEEEccCCcCcccCC----cCccCcCCCCEEeccCCcCcccC-------c
Q 002360 743 VRSIDISMNNFSGE----IPVEVTN-LQGLQSLNLSHNLFTGRIP----DNIGVMRSIESLDFSANQLSGQI-------P 806 (931)
Q Consensus 743 L~~LdLs~N~l~~~----ip~~l~~-l~~L~~L~Ls~N~l~~~ip----~~l~~l~~L~~LdLs~N~l~~~~-------p 806 (931)
|+.|||++|.+++. ++..+.. .++|++|+|++|++++..+ ..+..+++|+.|++++|.+.+.. +
T Consensus 198 L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~ 277 (362)
T 3goz_A 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG 277 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH
T ss_pred CCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH
Confidence 68999999999863 5556665 4589999999999986544 34567789999999999955443 4
Q ss_pred ccccCCCCCCeeeCCCccccccCC
Q 002360 807 QSMSNLSFLNYLNLSNNNLNGEIP 830 (931)
Q Consensus 807 ~~l~~l~~L~~L~ls~N~l~g~ip 830 (931)
..+..+++|+.||+++|++.+..|
T Consensus 278 ~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 278 AAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp TTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHhccCCceEEEecCCCcCCCcch
Confidence 467788899999999999877633
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=6.9e-23 Score=215.18 Aligned_cols=208 Identities=21% Similarity=0.263 Sum_probs=180.1
Q ss_pred CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360 551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD 630 (931)
Q Consensus 551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 630 (931)
+++|+.|++++|.++.. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..|.++++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 57899999999998753 3578899999999999999853 4788999999999999999988888899999999999
Q ss_pred cCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcc
Q 002360 631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSD 710 (931)
Q Consensus 631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 710 (931)
+++|++++ +|...+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|
T Consensus 116 L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----------- 183 (272)
T 3rfs_A 116 LVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL----------- 183 (272)
T ss_dssp CTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------
T ss_pred CCCCcCCc-cCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC-----------
Confidence 99999985 444443479999999999999998878788999999999999999997777667666655
Q ss_pred ccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCC
Q 002360 711 ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS 790 (931)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 790 (931)
+.|++++|++++..|..++.+++|++|++++|.+.+.. ++
T Consensus 184 ---------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~ 223 (272)
T 3rfs_A 184 ---------------------------------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PG 223 (272)
T ss_dssp ---------------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TT
T ss_pred ---------------------------------CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cH
Confidence 89999999999888888999999999999999998654 46
Q ss_pred CCEEeccCCcCcccCcccccCCCC
Q 002360 791 IESLDFSANQLSGQIPQSMSNLSF 814 (931)
Q Consensus 791 L~~LdLs~N~l~~~~p~~l~~l~~ 814 (931)
|+.|+++.|.++|.+|.+++.+..
T Consensus 224 l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 224 IRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp THHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHHHHHHHhCCCcccCcccccCC
Confidence 899999999999999998876643
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.2e-22 Score=212.81 Aligned_cols=203 Identities=19% Similarity=0.157 Sum_probs=176.1
Q ss_pred CCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEE
Q 002360 550 FSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEAL 629 (931)
Q Consensus 550 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 629 (931)
.++++++++++++.++. +|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+++..+. ..+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred ccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 35788999999999987 454443 6899999999999988888899999999999999999865443 788999999
Q ss_pred ecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCc
Q 002360 630 DVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSS 709 (931)
Q Consensus 630 ~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~ 709 (931)
++++|+++ .+|..+. .+++|++|++++|++++..|..|..+++|+.|+|++|++++..+..|..+++|
T Consensus 83 ~Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------- 150 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL---------- 150 (290)
T ss_dssp ECCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC----------
T ss_pred ECCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC----------
Confidence 99999998 7887665 79999999999999998888889999999999999999997766666665555
Q ss_pred cccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcC
Q 002360 710 DILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR 789 (931)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 789 (931)
+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..+.
T Consensus 151 ----------------------------------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~ 195 (290)
T 1p9a_G 151 ----------------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH 195 (290)
T ss_dssp ----------------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred ----------------------------------CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccc
Confidence 89999999999766667789999999999999999 8898899999
Q ss_pred CCCEEeccCCcCccc
Q 002360 790 SIESLDFSANQLSGQ 804 (931)
Q Consensus 790 ~L~~LdLs~N~l~~~ 804 (931)
+|+.|+|++|++.+.
T Consensus 196 ~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 196 LLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCSEEECCSCCBCCS
T ss_pred cCCeEEeCCCCccCc
Confidence 999999999999854
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=5.5e-23 Score=220.62 Aligned_cols=205 Identities=22% Similarity=0.238 Sum_probs=126.6
Q ss_pred CCCCEEecCCCcceecCCCcc--cCCCCCCEEEccCCcCccccc----hhhccCCCCcEEecCCCcccccCchhHHhhcC
Q 002360 576 PRLRTLNLGNNNFTGSLPMSI--GTLTSLRSLNLRNNRLSGVIP----TSFKNFSILEALDVGENELVGSIPTWIGERFS 649 (931)
Q Consensus 576 ~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~ 649 (931)
++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..|..+. .++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR-AFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC-CCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc-cCC
Confidence 345555555555555555554 555555555555555554333 2233455555566655555533333332 455
Q ss_pred cCcEEEccCcccccc--C--CcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccce
Q 002360 650 RLMILILRSNKFHGD--F--PIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDT 725 (931)
Q Consensus 650 ~L~~L~L~~n~l~~~--~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (931)
+|++|++++|++.+. + +..+..+++|++|+|++|+++. +|....
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~------------------------------- 217 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCA------------------------------- 217 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHH-------------------------------
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHH-------------------------------
Confidence 566666666655432 1 2233567777778888877752 121100
Q ss_pred eEEeecchhhhhhhccceeEEEcccCcccccCCccccCC---CCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCc
Q 002360 726 SLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNL---QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS 802 (931)
Q Consensus 726 ~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l---~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~ 802 (931)
.....++.|+.|||++|++++.+|..+..+ ++|++|+|++|+++ .+|..+. ++|++|||++|+++
T Consensus 218 ---------~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 218 ---------ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN 285 (310)
T ss_dssp ---------HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred ---------HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence 001123345778888888887777777776 58889999999988 7787764 78999999999998
Q ss_pred ccCcccccCCCCCCeeeCCCccccc
Q 002360 803 GQIPQSMSNLSFLNYLNLSNNNLNG 827 (931)
Q Consensus 803 ~~~p~~l~~l~~L~~L~ls~N~l~g 827 (931)
+. |. +..+++|+.|++++|+++.
T Consensus 286 ~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 286 RA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CC-ch-hhhCCCccEEECcCCCCCC
Confidence 64 43 6778888999999998864
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=3.3e-22 Score=207.31 Aligned_cols=209 Identities=18% Similarity=0.234 Sum_probs=128.7
Q ss_pred CCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEc
Q 002360 577 RLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILIL 656 (931)
Q Consensus 577 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L 656 (931)
..++++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------- 72 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ------------------- 72 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-------------------
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-------------------
Confidence 4566777777666 4555443 46666666666666655555555555555555555555
Q ss_pred cCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhh
Q 002360 657 RSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEY 736 (931)
Q Consensus 657 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (931)
+..+..+..+++|+.|+|++|++++..+..|..+++|
T Consensus 73 ------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------------------------------------- 109 (251)
T 3m19_A 73 ------TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL------------------------------------- 109 (251)
T ss_dssp ------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-------------------------------------
T ss_pred ------ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC-------------------------------------
Confidence 3334444555555555555555554444444443333
Q ss_pred hhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCC
Q 002360 737 NSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLN 816 (931)
Q Consensus 737 ~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~ 816 (931)
+.|+|++|++++..+..|..+++|++|+|++|++++..+..|+.+++|++|||++|++++..|..+..+++|+
T Consensus 110 -------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 110 -------DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp -------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred -------CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 5666666666655555667788888888888888866666788888888888888888877777888888888
Q ss_pred eeeCCCccccccCCCCCccCc------ccccccCCCCCCCCCCC-CCC
Q 002360 817 YLNLSNNNLNGEIPSSTQLQS------FDASSFAGNDLCGAPLS-SCT 857 (931)
Q Consensus 817 ~L~ls~N~l~g~ip~~~~~~~------~~~~~~~~n~l~~~~~~-~c~ 857 (931)
+|++++|+++|..+....+.. ....+..|+.+++.|.. .|.
T Consensus 183 ~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ 230 (251)
T 3m19_A 183 TITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCS 230 (251)
T ss_dssp EEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBT
T ss_pred EEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccC
Confidence 888888888877443221111 11223445566665544 565
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=6.3e-23 Score=220.16 Aligned_cols=231 Identities=16% Similarity=0.187 Sum_probs=179.8
Q ss_pred ccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcc--cCCCCCCEEecCCCcceecCC----CcccCC
Q 002360 526 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCW--MNWPRLRTLNLGNNNFTGSLP----MSIGTL 599 (931)
Q Consensus 526 l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~p----~~~~~l 599 (931)
++.+.+.++.++......+.... ..++|++|++++|++++..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVL-AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHH-HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred eeEEEEeCCcCCHHHHHHHHHhc-ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 45555665555432221111111 13569999999999999888888 889999999999999997555 344578
Q ss_pred CCCCEEEccCCcCccccchhhccCCCCcEEecCCCccccc--Cc-hhHHhhcCcCcEEEccCccccccC--Cc-ccCCCC
Q 002360 600 TSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGS--IP-TWIGERFSRLMILILRSNKFHGDF--PI-QLCRLA 673 (931)
Q Consensus 600 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p-~~~~~~l~~L~~L~L~~n~l~~~~--p~-~l~~l~ 673 (931)
++|++|++++|++.+..+..|..+++|++|++++|++.+. ++ ......+++|++|++++|+++... +. .+..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 9999999999999998889999999999999999998653 22 222236899999999999997321 12 246789
Q ss_pred CcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcc
Q 002360 674 SLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNF 753 (931)
Q Consensus 674 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 753 (931)
+|+.|+|++|++++..|+.+..+..+ +.|+.|+|++|++
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~-----------------------------------------~~L~~L~Ls~N~l 263 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWS-----------------------------------------SALNSLNLSFAGL 263 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCC-----------------------------------------TTCCCEECCSSCC
T ss_pred CCCEEECCCCCCCccchhhHHhccCc-----------------------------------------CcCCEEECCCCCC
Confidence 99999999999998888877665321 3358999999999
Q ss_pred cccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcc
Q 002360 754 SGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG 803 (931)
Q Consensus 754 ~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~ 803 (931)
+ .+|..+. ++|++|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus 264 ~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 264 E-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp C-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred C-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 9 7788775 8999999999999953 54 6788999999999999974
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=7.9e-23 Score=222.73 Aligned_cols=252 Identities=17% Similarity=0.202 Sum_probs=189.7
Q ss_pred ccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceec-CCCcccCCCCCCE
Q 002360 526 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGS-LPMSIGTLTSLRS 604 (931)
Q Consensus 526 l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~ 604 (931)
++.++++.+.+.+.....+. .+.++.|++++|.+++..+. +..+++|++|++++|.+++. +|..+..+++|++
T Consensus 49 ~~~l~l~~~~~~~~~~~~~~-----~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 49 WQTLDLTGKNLHPDVTGRLL-----SQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp SSEEECTTCBCCHHHHHHHH-----HTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred heeeccccccCCHHHHHhhh-----hccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 45666666665532222111 16789999999999886665 55789999999999998865 7777888999999
Q ss_pred EEccCCcCccccchhhccCCCCcEEecCCC-ccccc-CchhHHhhcCcCcEEEccCc-ccccc-CCcccCCCC-CcCEEE
Q 002360 605 LNLRNNRLSGVIPTSFKNFSILEALDVGEN-ELVGS-IPTWIGERFSRLMILILRSN-KFHGD-FPIQLCRLA-SLQILD 679 (931)
Q Consensus 605 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~-~L~~L~ 679 (931)
|++++|.+++..+..+..+++|++|++++| .+++. ++..+. .+++|++|++++| .+++. ++..+..++ +|+.|+
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 999999998888888999999999999999 67753 555444 7899999999999 88765 566777888 999999
Q ss_pred ccCCc--cc-cccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCc-ccc
Q 002360 680 VAYNS--LL-GTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNN-FSG 755 (931)
Q Consensus 680 Ls~N~--l~-~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~-l~~ 755 (931)
+++|. ++ +.+|..+.++ +.|+.|++++|. +++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~--------------------------------------------~~L~~L~l~~~~~l~~ 237 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRC--------------------------------------------PNLVHLDLSDSVMLKN 237 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHC--------------------------------------------TTCSEEECTTCTTCCG
T ss_pred eCCCcccCCHHHHHHHHhhC--------------------------------------------CCCCEEeCCCCCcCCH
Confidence 99994 44 3344444443 345889999998 777
Q ss_pred cCCccccCCCCCCEEEccCCc-CcccCCcCccCcCCCCEEeccCCcCcccCcccccCC-CCCCeeeCCCccccccCCCC
Q 002360 756 EIPVEVTNLQGLQSLNLSHNL-FTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNL-SFLNYLNLSNNNLNGEIPSS 832 (931)
Q Consensus 756 ~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip~~ 832 (931)
..+..+..+++|++|++++|. ++......++.+++|+.|++++| ++. ..+..+ ..|..|++++|++++..|..
T Consensus 238 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 238 DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred HHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 888888999999999999995 33222235788899999999998 432 234444 34777888999999888753
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=4.2e-22 Score=205.01 Aligned_cols=75 Identities=23% Similarity=0.269 Sum_probs=34.4
Q ss_pred EEEcccCcccccCCccccCCCCCCEEEccCCc-CcccCCcCccCc-CCCCEEeccCCcCcccCcccccCCCCCCeeeCCC
Q 002360 745 SIDISMNNFSGEIPVEVTNLQGLQSLNLSHNL-FTGRIPDNIGVM-RSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSN 822 (931)
Q Consensus 745 ~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l-~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~ 822 (931)
.|++++|+++ .+|......++|++|+|++|+ +++..+..|+.+ ++|+.||+++|++++ +|.. .+++|+.|++++
T Consensus 160 ~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 160 TLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARN 235 (239)
T ss_dssp EEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTT
T ss_pred EEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccC
Confidence 4444444444 223222222455555555553 554444445555 555555555555553 2222 344455555554
Q ss_pred c
Q 002360 823 N 823 (931)
Q Consensus 823 N 823 (931)
+
T Consensus 236 ~ 236 (239)
T 2xwt_C 236 T 236 (239)
T ss_dssp C
T ss_pred c
Confidence 3
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=2e-21 Score=201.50 Aligned_cols=181 Identities=19% Similarity=0.259 Sum_probs=136.5
Q ss_pred CCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEec
Q 002360 552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDV 631 (931)
Q Consensus 552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 631 (931)
.+.+.++++++.++. +|..+. ++++.|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 467899999999987 555554 68999999999999888889999999999999999999988888898999999999
Q ss_pred CCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccc
Q 002360 632 GENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDI 711 (931)
Q Consensus 632 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 711 (931)
++|+++ .+|...+..+++|++|++++|++++..+..+..+++|
T Consensus 91 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------------------------------ 133 (251)
T 3m19_A 91 ANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL------------------------------------ 133 (251)
T ss_dssp TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------------------------------
T ss_pred CCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc------------------------------------
Confidence 999887 4443333345555555555555554443334444444
Q ss_pred cccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCC
Q 002360 712 LYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI 791 (931)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L 791 (931)
+.|+|++|++++..+..|+.+++|++|+|++|++++..|..+..+++|
T Consensus 134 --------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 181 (251)
T 3m19_A 134 --------------------------------KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181 (251)
T ss_dssp --------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred --------------------------------cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 445555555554445567777888888888888887777778888888
Q ss_pred CEEeccCCcCccc
Q 002360 792 ESLDFSANQLSGQ 804 (931)
Q Consensus 792 ~~LdLs~N~l~~~ 804 (931)
+.|++++|++++.
T Consensus 182 ~~L~l~~N~~~c~ 194 (251)
T 3m19_A 182 QTITLFGNQFDCS 194 (251)
T ss_dssp CEEECCSCCBCTT
T ss_pred CEEEeeCCceeCC
Confidence 8888888888776
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.4e-21 Score=208.81 Aligned_cols=208 Identities=20% Similarity=0.333 Sum_probs=151.3
Q ss_pred ECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCccc
Q 002360 558 KLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELV 637 (931)
Q Consensus 558 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 637 (931)
.+..+.+++.++ +..+++|++|++++|.+.. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|++.
T Consensus 25 ~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 25 AAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HTTCSSTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred HhCCCCcCceec--HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC
Confidence 344444444322 3456677777887777763 44 56777788888888887775544 777788888888888876
Q ss_pred ccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccC
Q 002360 638 GSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSG 717 (931)
Q Consensus 638 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~ 717 (931)
.++ .+. .+++|++|++++|++++. + .+..+++|+.|++++|++++..+ +..+++
T Consensus 99 -~~~-~~~-~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~------------------- 152 (308)
T 1h6u_A 99 -NVS-AIA-GLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTN------------------- 152 (308)
T ss_dssp -CCG-GGT-TCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTT-------------------
T ss_pred -Cch-hhc-CCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCC-------------------
Confidence 344 333 678888888888888753 3 37788888888888888875433 444333
Q ss_pred CCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEecc
Q 002360 718 DNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFS 797 (931)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs 797 (931)
|+.|++++|++++. +. +..+++|++|++++|++++. +. +..+++|++|+++
T Consensus 153 -------------------------L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~ 203 (308)
T 1h6u_A 153 -------------------------LQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLK 203 (308)
T ss_dssp -------------------------CCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECT
T ss_pred -------------------------ccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEcc
Confidence 47888888888854 33 88889999999999999854 43 7888999999999
Q ss_pred CCcCcccCcccccCCCCCCeeeCCCcccccc
Q 002360 798 ANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE 828 (931)
Q Consensus 798 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 828 (931)
+|++++..| +..+++|+.|++++|++++.
T Consensus 204 ~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 204 NNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp TSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred CCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 999986653 78889999999999998763
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=4.7e-23 Score=228.80 Aligned_cols=252 Identities=20% Similarity=0.243 Sum_probs=191.5
Q ss_pred ccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCc---cccccCCcc-------cCCCCCCEEecCCCccee---
Q 002360 524 LLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNH---FSEGIPDCW-------MNWPRLRTLNLGNNNFTG--- 590 (931)
Q Consensus 524 ~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~---l~~~~~~~~-------~~l~~L~~L~Ls~n~l~~--- 590 (931)
+.++.+++++|.+++..+..++..+..+++|+.|++++|. +++.+|..+ ..+++|++|+|++|.+++
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 3445555555555555555555666678899999999864 444455444 688999999999999986
Q ss_pred -cCCCcccCCCCCCEEEccCCcCccccchhhc----cC---------CCCcEEecCCCccc-ccCch---hHHhhcCcCc
Q 002360 591 -SLPMSIGTLTSLRSLNLRNNRLSGVIPTSFK----NF---------SILEALDVGENELV-GSIPT---WIGERFSRLM 652 (931)
Q Consensus 591 -~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~----~l---------~~L~~L~L~~N~l~-~~~p~---~~~~~l~~L~ 652 (931)
.+|..+..+++|++|++++|.++...+..+. .+ ++|++|++++|+++ +.+|. .+ ..+++|+
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~L~ 190 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF-QSHRLLH 190 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH-HHCTTCC
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH-HhCCCcC
Confidence 4677788899999999999999755444444 33 89999999999997 44552 33 3689999
Q ss_pred EEEccCccccc-----cCCcccCCCCCcCEEEccCCccc----cccCccccccccccccCCCCCCccccccccCCCcccc
Q 002360 653 ILILRSNKFHG-----DFPIQLCRLASLQILDVAYNSLL----GTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVE 723 (931)
Q Consensus 653 ~L~L~~n~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~ 723 (931)
.|++++|+++. ..|..+..+++|+.|+|++|.++ +.+|..+..+++|
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L------------------------ 246 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL------------------------ 246 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC------------------------
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc------------------------
Confidence 99999999983 34557889999999999999996 5566666555544
Q ss_pred ceeEEeecchhhhhhhccceeEEEcccCccccc----CCcccc--CCCCCCEEEccCCcCcc----cCCcCc-cCcCCCC
Q 002360 724 DTSLVMKGFLVEYNSILNLVRSIDISMNNFSGE----IPVEVT--NLQGLQSLNLSHNLFTG----RIPDNI-GVMRSIE 792 (931)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~----ip~~l~--~l~~L~~L~Ls~N~l~~----~ip~~l-~~l~~L~ 792 (931)
+.|+|++|.+++. +|..+. .+++|++|+|++|.+++ .+|..+ .++++|+
T Consensus 247 --------------------~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~ 306 (386)
T 2ca6_A 247 --------------------RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306 (386)
T ss_dssp --------------------CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred --------------------CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence 8999999999876 567774 49999999999999997 488877 6789999
Q ss_pred EEeccCCcCcccCc--cccc-CCCCCCeeeC
Q 002360 793 SLDFSANQLSGQIP--QSMS-NLSFLNYLNL 820 (931)
Q Consensus 793 ~LdLs~N~l~~~~p--~~l~-~l~~L~~L~l 820 (931)
+|++++|++++..| ..+. .++.++..++
T Consensus 307 ~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l 337 (386)
T 2ca6_A 307 FLELNGNRFSEEDDVVDEIREVFSTRGRGEL 337 (386)
T ss_dssp EEECTTSBSCTTSHHHHHHHHHHHHHTCCEE
T ss_pred EEEccCCcCCcchhHHHHHHHHhhhcCcchh
Confidence 99999999998875 3332 2344444444
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=2.8e-22 Score=218.38 Aligned_cols=254 Identities=13% Similarity=0.194 Sum_probs=187.4
Q ss_pred CCcEEeCCCCCCCCCcchhHHhcc--ccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhh
Q 002360 467 KLNDLDISSTRISDKIPRAFWNSI--FQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLI 544 (931)
Q Consensus 467 ~L~~L~Ls~n~i~~~~~~~~~~~~--~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~ 544 (931)
.++.++++++.+. +.. ...+ +.++.|++++|.+.+..+..
T Consensus 48 ~~~~l~l~~~~~~---~~~-~~~~~~~~l~~L~l~~n~l~~~~~~~---------------------------------- 89 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDV-TGRLLSQGVIAFRCPRSFMDQPLAEH---------------------------------- 89 (336)
T ss_dssp TSSEEECTTCBCC---HHH-HHHHHHTTCSEEECTTCEECSCCCSC----------------------------------
T ss_pred hheeeccccccCC---HHH-HHhhhhccceEEEcCCccccccchhh----------------------------------
Confidence 4677777777765 222 2223 67777777777776554431
Q ss_pred hccCCCCCCccEEECcCCccccc-cCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCC-cCccc-cchhhc
Q 002360 545 CQGENFSKNIEFLKLSTNHFSEG-IPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNN-RLSGV-IPTSFK 621 (931)
Q Consensus 545 ~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~ 621 (931)
..+++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+.
T Consensus 90 ----~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~ 165 (336)
T 2ast_B 90 ----FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 165 (336)
T ss_dssp ----CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred ----ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh
Confidence 1256788888888888765 6777788889999999999888777778888899999999998 67653 666788
Q ss_pred cCCCCcEEecCCC-ccccc-CchhHHhhcC-cCcEEEccCc--ccc-ccCCcccCCCCCcCEEEccCCc-cccccCcccc
Q 002360 622 NFSILEALDVGEN-ELVGS-IPTWIGERFS-RLMILILRSN--KFH-GDFPIQLCRLASLQILDVAYNS-LLGTIPRCIN 694 (931)
Q Consensus 622 ~l~~L~~L~L~~N-~l~~~-~p~~~~~~l~-~L~~L~L~~n--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~ 694 (931)
++++|++|++++| .+++. ++..+. .++ +|++|++++| .++ +.+|..+..+++|+.|++++|. +++..+..+.
T Consensus 166 ~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 244 (336)
T 2ast_B 166 SCSRLDELNLSWCFDFTEKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 244 (336)
T ss_dssp HCTTCCEEECCCCTTCCHHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred cCCCCCEEcCCCCCCcChHHHHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence 8899999999999 88754 455554 788 9999999998 455 4466677788999999999998 6666666666
Q ss_pred ccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCc-ccccCCccccCCCCCCEEEcc
Q 002360 695 NFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNN-FSGEIPVEVTNLQGLQSLNLS 773 (931)
Q Consensus 695 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~-l~~~ip~~l~~l~~L~~L~Ls 773 (931)
++++| +.|++++|. ++......++.+++|++|+++
T Consensus 245 ~l~~L--------------------------------------------~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 245 QLNYL--------------------------------------------QHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp GCTTC--------------------------------------------CEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred CCCCC--------------------------------------------CEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 55544 889999885 332222367889999999999
Q ss_pred CCcCcccCCcCccCc-CCCCEEeccCCcCcccCcccccC
Q 002360 774 HNLFTGRIPDNIGVM-RSIESLDFSANQLSGQIPQSMSN 811 (931)
Q Consensus 774 ~N~l~~~ip~~l~~l-~~L~~LdLs~N~l~~~~p~~l~~ 811 (931)
+| ++ ...+..+ .+++.|++++|++++..|..++.
T Consensus 281 ~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 281 GI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred Cc-cC---HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 99 33 2245555 34888889999999999987664
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.4e-21 Score=199.37 Aligned_cols=198 Identities=16% Similarity=0.185 Sum_probs=171.8
Q ss_pred CCccEEECcCCccccccCCcccCCCCCCEEecCCCc-ceecCCCcccCCCCCCEEEccC-CcCccccchhhccCCCCcEE
Q 002360 552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNN-FTGSLPMSIGTLTSLRSLNLRN-NRLSGVIPTSFKNFSILEAL 629 (931)
Q Consensus 552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L 629 (931)
++++.|++++|+++++.+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 589999999999999888899999999999999997 8877777899999999999999 99998888899999999999
Q ss_pred ecCCCcccccCchhHHhhcCcCc---EEEccCc-cccccCCcccCCCCCcC-EEEccCCccccccCccccccccccccCC
Q 002360 630 DVGENELVGSIPTWIGERFSRLM---ILILRSN-KFHGDFPIQLCRLASLQ-ILDVAYNSLLGTIPRCINNFSAMATADS 704 (931)
Q Consensus 630 ~L~~N~l~~~~p~~~~~~l~~L~---~L~L~~n-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~~~~ 704 (931)
++++|++++ +|. + ..+++|+ +|++++| .+++..+..+..+++|+ .|++++|+++ .+|......+
T Consensus 111 ~l~~n~l~~-lp~-~-~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~------- 179 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-L-TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGT------- 179 (239)
T ss_dssp EEEEECCCS-CCC-C-TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTC-------
T ss_pred eCCCCCCcc-ccc-c-ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCC-------
Confidence 999999984 887 4 3788888 9999999 99988788899999999 9999999998 5554322112
Q ss_pred CCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCc-ccccCCccccCC-CCCCEEEccCCcCcccCC
Q 002360 705 SDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNN-FSGEIPVEVTNL-QGLQSLNLSHNLFTGRIP 782 (931)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~-l~~~ip~~l~~l-~~L~~L~Ls~N~l~~~ip 782 (931)
.|+.|+|++|+ +++..+..|..+ ++|++|++++|+++ .+|
T Consensus 180 -------------------------------------~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~ 221 (239)
T 2xwt_C 180 -------------------------------------KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALP 221 (239)
T ss_dssp -------------------------------------EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCC
T ss_pred -------------------------------------CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCC
Confidence 35899999995 997778889999 99999999999999 556
Q ss_pred cCccCcCCCCEEeccCCc
Q 002360 783 DNIGVMRSIESLDFSANQ 800 (931)
Q Consensus 783 ~~l~~l~~L~~LdLs~N~ 800 (931)
.. .+++|+.|+++++.
T Consensus 222 ~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 222 SK--GLEHLKELIARNTW 237 (239)
T ss_dssp CT--TCTTCSEEECTTC-
T ss_pred hh--HhccCceeeccCcc
Confidence 54 68899999999863
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=7.7e-23 Score=224.59 Aligned_cols=219 Identities=20% Similarity=0.207 Sum_probs=130.5
Q ss_pred CccEEECcCCccccccCCcccCC-----CCCCEEecCCCcceecCCCc----ccCC-CCCCEEEccCCcCccccchhhcc
Q 002360 553 NIEFLKLSTNHFSEGIPDCWMNW-----PRLRTLNLGNNNFTGSLPMS----IGTL-TSLRSLNLRNNRLSGVIPTSFKN 622 (931)
Q Consensus 553 ~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~p~~----~~~l-~~L~~L~L~~n~l~~~~p~~~~~ 622 (931)
+|++|++++|++++..+..+..+ ++|++|++++|.+++..+.. +..+ ++|++|++++|++++..+..+..
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 45555555555555444333332 56666666666665444332 2233 56667777777666555544332
Q ss_pred -----CCCCcEEecCCCcccccCchhHHh---hcC-cCcEEEccCccccccCCccc----CCC-CCcCEEEccCCccccc
Q 002360 623 -----FSILEALDVGENELVGSIPTWIGE---RFS-RLMILILRSNKFHGDFPIQL----CRL-ASLQILDVAYNSLLGT 688 (931)
Q Consensus 623 -----l~~L~~L~L~~N~l~~~~p~~~~~---~l~-~L~~L~L~~n~l~~~~p~~l----~~l-~~L~~L~Ls~N~l~~~ 688 (931)
.++|++|++++|++.+..+..+.. .++ +|++|++++|++++..+..+ ..+ ++|+.|||++|++++.
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~ 211 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK 211 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence 356777777777776433322211 233 77777777777766554333 334 4788888888887643
Q ss_pred cCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCC----ccccCC
Q 002360 689 IPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIP----VEVTNL 764 (931)
Q Consensus 689 ~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip----~~l~~l 764 (931)
....+.. ......+.|+.|||++|.+++..+ ..+..+
T Consensus 212 ~~~~l~~---------------------------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l 252 (362)
T 3goz_A 212 SYAELAY---------------------------------------IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252 (362)
T ss_dssp CHHHHHH---------------------------------------HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTT
T ss_pred HHHHHHH---------------------------------------HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcC
Confidence 2211110 000112345788888888876544 335677
Q ss_pred CCCCEEEccCCcCccc-------CCcCccCcCCCCEEeccCCcCcccCccccc
Q 002360 765 QGLQSLNLSHNLFTGR-------IPDNIGVMRSIESLDFSANQLSGQIPQSMS 810 (931)
Q Consensus 765 ~~L~~L~Ls~N~l~~~-------ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~ 810 (931)
++|++|+|++|.+.+. ++..+..+++|+.||+++|++.+..|..+.
T Consensus 253 ~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~ 305 (362)
T 3goz_A 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPIS 305 (362)
T ss_dssp TTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHH
T ss_pred CCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHH
Confidence 8899999999985533 334677889999999999999877555443
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=5.7e-21 Score=204.17 Aligned_cols=192 Identities=21% Similarity=0.327 Sum_probs=158.7
Q ss_pred CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360 551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD 630 (931)
Q Consensus 551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 630 (931)
+++|+.|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|++++. ..+..+++|+.|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 4678999999998887 34 58889999999999999985443 88899999999999999864 3688899999999
Q ss_pred cCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcc
Q 002360 631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSD 710 (931)
Q Consensus 631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 710 (931)
+++|++++ ++. + ..+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++
T Consensus 114 l~~n~l~~-~~~-l-~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~------------ 174 (308)
T 1h6u_A 114 LTSTQITD-VTP-L-AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSK------------ 174 (308)
T ss_dssp CTTSCCCC-CGG-G-TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTT------------
T ss_pred CCCCCCCC-chh-h-cCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCC------------
Confidence 99999984 554 4 378999999999999986544 7889999999999999985433 544444
Q ss_pred ccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCC
Q 002360 711 ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS 790 (931)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 790 (931)
|+.|++++|++++..+ +..+++|++|+|++|++++..| +..+++
T Consensus 175 --------------------------------L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~ 218 (308)
T 1h6u_A 175 --------------------------------LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSN 218 (308)
T ss_dssp --------------------------------CCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTT
T ss_pred --------------------------------CCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCC
Confidence 4889999999986443 8899999999999999995543 889999
Q ss_pred CCEEeccCCcCcc
Q 002360 791 IESLDFSANQLSG 803 (931)
Q Consensus 791 L~~LdLs~N~l~~ 803 (931)
|+.|++++|++++
T Consensus 219 L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 219 LFIVTLTNQTITN 231 (308)
T ss_dssp CCEEEEEEEEEEC
T ss_pred CCEEEccCCeeec
Confidence 9999999999985
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=4.3e-20 Score=201.52 Aligned_cols=245 Identities=14% Similarity=0.152 Sum_probs=185.9
Q ss_pred cccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCC-CcccCCCCCC
Q 002360 525 LGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLP-MSIGTLTSLR 603 (931)
Q Consensus 525 ~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~ 603 (931)
..+.+++++++++. +|..+ .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| ..|.++++++
T Consensus 10 ~~~~v~C~~~~Lt~-iP~~l------~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 10 SNRVFLCQESKVTE-IPSDL------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH 82 (350)
T ss_dssp ETTEEEEESTTCCS-CCTTC------CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred eCCEEEecCCCCCc-cCcCc------CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence 34567777777763 44333 3579999999999998777889999999999999999876655 5688899887
Q ss_pred E-EEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccC-ccccccCCcccCCCC-CcCEEEc
Q 002360 604 S-LNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRS-NKFHGDFPIQLCRLA-SLQILDV 680 (931)
Q Consensus 604 ~-L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~-~L~~L~L 680 (931)
+ +.++.|+++...|..|.++++|++|++++|++. .+|...+....++..|++.+ +++....+..+..+. .++.|+|
T Consensus 83 ~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 83 EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161 (350)
T ss_dssp EEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred hhhcccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence 5 667789999888999999999999999999998 45544333567788999976 566655566677665 6889999
Q ss_pred cCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEccc-CcccccCCc
Q 002360 681 AYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISM-NNFSGEIPV 759 (931)
Q Consensus 681 s~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~-N~l~~~ip~ 759 (931)
++|+++...+..| ...+ ++.+++++ |.++...+.
T Consensus 162 ~~N~i~~i~~~~f-~~~~--------------------------------------------L~~l~l~~~n~l~~i~~~ 196 (350)
T 4ay9_X 162 NKNGIQEIHNSAF-NGTQ--------------------------------------------LDELNLSDNNNLEELPND 196 (350)
T ss_dssp CSSCCCEECTTSS-TTEE--------------------------------------------EEEEECTTCTTCCCCCTT
T ss_pred ccccccCCChhhc-cccc--------------------------------------------hhHHhhccCCcccCCCHH
Confidence 9999985434333 2222 47899985 566644345
Q ss_pred cccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCcccc
Q 002360 760 EVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN 826 (931)
Q Consensus 760 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 826 (931)
.|..+++|++|||++|+|+ .+|.. .+.+|+.|.+.++.--..+| .+.++++|+.++++++.-.
T Consensus 197 ~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~c 259 (350)
T 4ay9_X 197 VFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSHC 259 (350)
T ss_dssp TTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHHH
T ss_pred HhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCccc
Confidence 6899999999999999999 55542 35566677666655455777 4889999999999876543
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=2.6e-20 Score=213.28 Aligned_cols=190 Identities=28% Similarity=0.389 Sum_probs=136.7
Q ss_pred CCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEec
Q 002360 552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDV 631 (931)
Q Consensus 552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 631 (931)
.+++.|++++|++++ +|..+ .++|++|++++|+++ .+| ..+++|++|++++|++++ +|. +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 367888888888877 55544 267888888888887 566 346788888888888876 555 544 7888888
Q ss_pred CCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccc
Q 002360 632 GENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDI 711 (931)
Q Consensus 632 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 711 (931)
++|++++ +|. .+++|+.|++++|.+++ +|. .+++|+.|+|++|++++ +|. |. ++
T Consensus 128 s~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~------------- 181 (571)
T 3cvr_A 128 DNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ES------------- 181 (571)
T ss_dssp CSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TT-------------
T ss_pred CCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CC-------------
Confidence 8888874 666 36788888888888875 554 46778888888888775 554 43 22
Q ss_pred cccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCC-------CEEEccCCcCcccCCcC
Q 002360 712 LYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGL-------QSLNLSHNLFTGRIPDN 784 (931)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L-------~~L~Ls~N~l~~~ip~~ 784 (931)
|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+ .+|..
T Consensus 182 -------------------------------L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~ 225 (571)
T 3cvr_A 182 -------------------------------LEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPEN 225 (571)
T ss_dssp -------------------------------CCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGG
T ss_pred -------------------------------CCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHH
Confidence 367888888887 5665 543 66 88888888887 67777
Q ss_pred ccCcCCCCEEeccCCcCcccCcccccCCCC
Q 002360 785 IGVMRSIESLDFSANQLSGQIPQSMSNLSF 814 (931)
Q Consensus 785 l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~ 814 (931)
+..+++|+.|+|++|++++.+|..+..++.
T Consensus 226 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 226 ILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp GGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred HhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 777888888888888888888877766543
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=6.4e-20 Score=209.98 Aligned_cols=183 Identities=23% Similarity=0.355 Sum_probs=156.8
Q ss_pred CCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEE
Q 002360 576 PRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILI 655 (931)
Q Consensus 576 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~ 655 (931)
.+|+.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|++++ +|. +. . +|++|+
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-A--SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-T--TCCEEE
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-c--CCCEEE
Confidence 389999999999996 77766 389999999999999 566 457999999999999995 887 54 2 999999
Q ss_pred ccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhh
Q 002360 656 LRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVE 735 (931)
Q Consensus 656 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (931)
+++|++++ +|. .+++|+.|+|++|++++ +|. .+
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l--------------------------------------- 159 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LP--------------------------------------- 159 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CC---------------------------------------
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cC---------------------------------------
Confidence 99999997 665 68999999999999986 554 22
Q ss_pred hhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCC-------CEEeccCCcCcccCccc
Q 002360 736 YNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI-------ESLDFSANQLSGQIPQS 808 (931)
Q Consensus 736 ~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L-------~~LdLs~N~l~~~~p~~ 808 (931)
+.|+.|+|++|++++ +|. +. ++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+ .+|..
T Consensus 160 -----~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~ 225 (571)
T 3cvr_A 160 -----TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPEN 225 (571)
T ss_dssp -----TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGG
T ss_pred -----CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHH
Confidence 234899999999996 777 66 99999999999999 7887 665 77 99999999999 68988
Q ss_pred ccCCCCCCeeeCCCccccccCCC
Q 002360 809 MSNLSFLNYLNLSNNNLNGEIPS 831 (931)
Q Consensus 809 l~~l~~L~~L~ls~N~l~g~ip~ 831 (931)
+..+++|++|+|++|+++|.+|.
T Consensus 226 l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 226 ILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp GGGSCTTEEEECCSSSCCHHHHH
T ss_pred HhcCCCCCEEEeeCCcCCCcCHH
Confidence 88899999999999999998885
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=5.7e-20 Score=184.58 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=38.1
Q ss_pred EEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccc
Q 002360 746 IDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL 825 (931)
Q Consensus 746 LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l 825 (931)
|+|++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+. ++.|++|++++|++
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKH 177 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHC
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhC
Confidence 33333333333333344455555555555555544444455555555555555554432 23455555555555
Q ss_pred cccCCC
Q 002360 826 NGEIPS 831 (931)
Q Consensus 826 ~g~ip~ 831 (931)
+|.+|.
T Consensus 178 ~g~ip~ 183 (208)
T 2o6s_A 178 SGVVRN 183 (208)
T ss_dssp TTTBBC
T ss_pred Cceeec
Confidence 555554
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.4e-19 Score=181.80 Aligned_cols=181 Identities=19% Similarity=0.191 Sum_probs=96.6
Q ss_pred cEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCC
Q 002360 555 EFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGEN 634 (931)
Q Consensus 555 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 634 (931)
+.++.+++.++. +|..+ .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 344444444443 22222 234555555555555443334444555555555555554443334444444444444444
Q ss_pred cccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcccccc
Q 002360 635 ELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYA 714 (931)
Q Consensus 635 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~ 714 (931)
++ ++..+..+..+++|+.|++++|++++..+..+.++++|
T Consensus 87 ~l-------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--------------- 126 (208)
T 2o6s_A 87 QL-------------------------QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL--------------- 126 (208)
T ss_dssp CC-------------------------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC---------------
T ss_pred cC-------------------------CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC---------------
Confidence 44 43333334455555555555555554444334433333
Q ss_pred ccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEE
Q 002360 715 FSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESL 794 (931)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L 794 (931)
+.|+|++|++++..+..+..+++|++|++++|.+.+. +++|+.|
T Consensus 127 -----------------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L 170 (208)
T 2o6s_A 127 -----------------------------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYL 170 (208)
T ss_dssp -----------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHH
T ss_pred -----------------------------CEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHH
Confidence 5566666666654455566677777777777766543 3457777
Q ss_pred eccCCcCcccCcccccCCCC
Q 002360 795 DFSANQLSGQIPQSMSNLSF 814 (931)
Q Consensus 795 dLs~N~l~~~~p~~l~~l~~ 814 (931)
+++.|+++|.+|.+++.++.
T Consensus 171 ~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 171 SEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp HHHHHHCTTTBBCTTSSBCT
T ss_pred HHHHHhCCceeeccCccccC
Confidence 77777777777777776654
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=181.97 Aligned_cols=157 Identities=22% Similarity=0.206 Sum_probs=127.1
Q ss_pred cEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCC-cccCCCCCcCEEEccCCccccccCccccccccccccCCC
Q 002360 627 EALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFP-IQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSS 705 (931)
Q Consensus 627 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 705 (931)
+.+++++|.++ .+|..+ ...+++|++++|++++..+ ..+..+++|+.|+|++|++++..+..|.+++.|
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------ 83 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------ 83 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence 46777777776 566644 2456777888887776644 446778888888888888887766677666555
Q ss_pred CCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCc
Q 002360 706 DQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI 785 (931)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l 785 (931)
+.|+|++|++++..|..|..+++|++|+|++|++++..|..|
T Consensus 84 --------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 125 (220)
T 2v70_A 84 --------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSF 125 (220)
T ss_dssp --------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSS
T ss_pred --------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHc
Confidence 788888888887777788899999999999999998889999
Q ss_pred cCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCC
Q 002360 786 GVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS 831 (931)
Q Consensus 786 ~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 831 (931)
..+++|+.|+|++|++++..|..|..+++|++|++++|+++|.++.
T Consensus 126 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 126 IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 9999999999999999988899999999999999999999987763
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=4e-19 Score=193.84 Aligned_cols=240 Identities=17% Similarity=0.131 Sum_probs=175.3
Q ss_pred cEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccc-hhhccCCCCcE-EecC
Q 002360 555 EFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIP-TSFKNFSILEA-LDVG 632 (931)
Q Consensus 555 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~L~ 632 (931)
++++.++++++. +|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| ..|.+++++.. +.++
T Consensus 12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 567888888886 56555 3579999999999996666778999999999999999876554 56788888765 6667
Q ss_pred CCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccC-CccccccCccccccccccccCCCCCCccc
Q 002360 633 ENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAY-NSLLGTIPRCINNFSAMATADSSDQSSDI 711 (931)
Q Consensus 633 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 711 (931)
+|+++ .++...+..+++|++|++++|++.+..+..+.....+..+++.+ |++....+..|..+..
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~------------- 154 (350)
T 4ay9_X 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF------------- 154 (350)
T ss_dssp ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS-------------
T ss_pred CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcch-------------
Confidence 78888 45444445789999999999999877776777777888888866 4555444444443322
Q ss_pred cccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccC-CcCcccCC-cCccCcC
Q 002360 712 LYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSH-NLFTGRIP-DNIGVMR 789 (931)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~-N~l~~~ip-~~l~~l~ 789 (931)
.++.|+|++|+++ .+|.......+|++|++++ |.++ .+| ..|+.++
T Consensus 155 ------------------------------~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~ 202 (350)
T 4ay9_X 155 ------------------------------ESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGAS 202 (350)
T ss_dssp ------------------------------SCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEE
T ss_pred ------------------------------hhhhhcccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCc
Confidence 2488999999999 5666666678899999986 5666 565 5689999
Q ss_pred CCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCCCCccCcccccccCCC
Q 002360 790 SIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGN 846 (931)
Q Consensus 790 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n 846 (931)
+|++||||+|+|+...+..+.+++ .|.+.+++--..+|....+..+....+..+
T Consensus 203 ~L~~LdLs~N~l~~lp~~~~~~L~---~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 203 GPVILDISRTRIHSLPSYGLENLK---KLRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp CCSEEECTTSCCCCCCSSSCTTCC---EEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred ccchhhcCCCCcCccChhhhccch---HhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 999999999999965555555554 555444443456776556666665555443
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=5.8e-19 Score=178.30 Aligned_cols=156 Identities=18% Similarity=0.189 Sum_probs=129.8
Q ss_pred cEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCC
Q 002360 627 EALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSD 706 (931)
Q Consensus 627 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~ 706 (931)
+.++++++.++ .+|..+ .++|+.|++++|.+++..+..+..+++|+.|+|++|++++..|..|.++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L------- 82 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL------- 82 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence 46777777776 677654 2578888888888887777788888888888888888888778877776665
Q ss_pred CCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCcc
Q 002360 707 QSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIG 786 (931)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~ 786 (931)
+.|+|++|++++..+..|..+++|++|+|++|++++..|..|.
T Consensus 83 -------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~ 125 (220)
T 2v9t_B 83 -------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ 125 (220)
T ss_dssp -------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred -------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcC
Confidence 7888999998866666678899999999999999988888999
Q ss_pred CcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCC
Q 002360 787 VMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIP 830 (931)
Q Consensus 787 ~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 830 (931)
.+++|+.|+|++|++++..+..+..+++|++|++++|++.+..+
T Consensus 126 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 99999999999999998888889999999999999999987643
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=1.6e-18 Score=176.44 Aligned_cols=157 Identities=21% Similarity=0.212 Sum_probs=133.6
Q ss_pred CcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCC
Q 002360 626 LEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSS 705 (931)
Q Consensus 626 L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 705 (931)
-+.++.+++.+. .+|..+ .++|++|++++|.+++..|..+..+++|+.|+|++|++.+..+..|..++.|
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------ 90 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL------ 90 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc------
Confidence 456777777776 777654 3788888888888888888888889999999999999875555556665554
Q ss_pred CCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCc
Q 002360 706 DQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI 785 (931)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l 785 (931)
+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+
T Consensus 91 --------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 131 (229)
T 3e6j_A 91 --------------------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI 131 (229)
T ss_dssp --------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTG
T ss_pred --------------------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCccc
Confidence 88999999999777777899999999999999999 889999
Q ss_pred cCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCC
Q 002360 786 GVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS 831 (931)
Q Consensus 786 ~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 831 (931)
..+++|+.|+|++|++++..+..+..+++|+.|++++|+++|.++.
T Consensus 132 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 132 ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 9999999999999999987778899999999999999999988763
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.1e-18 Score=184.54 Aligned_cols=186 Identities=20% Similarity=0.309 Sum_probs=99.6
Q ss_pred EECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcc
Q 002360 557 LKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENEL 636 (931)
Q Consensus 557 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 636 (931)
+.+..+.+++..+ +..+++|+.|++++|.+... + .+..+++|++|++++|++++..+ +..+++|++|++++|++
T Consensus 29 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 3444444443322 23455666666666666532 2 35556666666666666654433 55556666666666655
Q ss_pred cccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcccccccc
Q 002360 637 VGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFS 716 (931)
Q Consensus 637 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~ 716 (931)
++ +|. +. .+++|++|++++|++++. ..+..+++|
T Consensus 103 ~~-~~~-l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~L----------------------------------------- 136 (291)
T 1h6t_A 103 KD-LSS-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQL----------------------------------------- 136 (291)
T ss_dssp CC-GGG-GT-TCTTCCEEECTTSCCCCC--GGGGGCTTC-----------------------------------------
T ss_pred CC-Chh-hc-cCCCCCEEECCCCcCCCC--hhhcCCCCC-----------------------------------------
Confidence 52 222 22 344444444444444421 123333444
Q ss_pred CCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEec
Q 002360 717 GDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDF 796 (931)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdL 796 (931)
+.|++++|++++. ..+..+++|++|++++|++++..| ++.+++|+.|++
T Consensus 137 ---------------------------~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L 185 (291)
T 1h6t_A 137 ---------------------------ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 185 (291)
T ss_dssp ---------------------------CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ---------------------------CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEEC
Confidence 4555555555532 345566666666666666664333 666666666666
Q ss_pred cCCcCcccCcccccCCCCCCeeeCCCccccc
Q 002360 797 SANQLSGQIPQSMSNLSFLNYLNLSNNNLNG 827 (931)
Q Consensus 797 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 827 (931)
++|++++ +| .+..+++|+.|++++|+++.
T Consensus 186 ~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 186 SKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 6666664 33 26666666666666666654
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=3e-18 Score=173.09 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=104.1
Q ss_pred CcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCC
Q 002360 626 LEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSS 705 (931)
Q Consensus 626 L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 705 (931)
++.|++++|++++..|...+..+++|++|++++|++++..+..|..+++|+.|+|++|++++..|..|.++++|
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------ 107 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL------ 107 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC------
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC------
Confidence 34555555555533333333356666667777776666666677778888888888888877666666665554
Q ss_pred CCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCc
Q 002360 706 DQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI 785 (931)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l 785 (931)
+.|+|++|++++..|..|..+++|++|+|++|++++..|..|
T Consensus 108 --------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 108 --------------------------------------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp --------------------------------------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred --------------------------------------CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence 788888888888888889999999999999999998889999
Q ss_pred cCcCCCCEEeccCCcCcccCc
Q 002360 786 GVMRSIESLDFSANQLSGQIP 806 (931)
Q Consensus 786 ~~l~~L~~LdLs~N~l~~~~p 806 (931)
..+++|+.|++++|++++..+
T Consensus 150 ~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 150 DTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTCTTCCEEECCSCCEECSGG
T ss_pred cCCCCCCEEEecCcCCcCCCc
Confidence 999999999999999987654
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=1.7e-18 Score=189.62 Aligned_cols=114 Identities=19% Similarity=0.183 Sum_probs=69.4
Q ss_pred CEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhc-cCCCCcEEecCCCcccccCchhHHhhcCcCcEEEcc
Q 002360 579 RTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFK-NFSILEALDVGENELVGSIPTWIGERFSRLMILILR 657 (931)
Q Consensus 579 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~ 657 (931)
+.++++++.++ .+|..+. +.++.|+|++|++++..+..|. ++++|+.|+|++|++++..+..+ ..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF-VPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc-cCCCCCCEEECC
Confidence 57888888877 4665543 4577778888777776666665 67777777777777763332223 255666666666
Q ss_pred CccccccCCcccCCCCCcCEEEccCCccccccCcccccc
Q 002360 658 SNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNF 696 (931)
Q Consensus 658 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 696 (931)
+|++++..+..|..+++|+.|+|++|++++..|..|.++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 135 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM 135 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCc
Confidence 666655555555555555555555555554444444433
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=2.4e-18 Score=182.08 Aligned_cols=175 Identities=21% Similarity=0.358 Sum_probs=121.3
Q ss_pred cCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccc
Q 002360 622 NFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMAT 701 (931)
Q Consensus 622 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 701 (931)
.+++|+.|++++|.+. .++. +. .+++|++|++++|++++..+ +..+++|+.|++++|++++ +| .+..++.
T Consensus 44 ~l~~L~~L~l~~~~i~-~~~~-~~-~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~--- 113 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKK--- 113 (291)
T ss_dssp HHHTCCEEECTTSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTT---
T ss_pred hcCcccEEEccCCCcc-cChh-Hh-cCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCC---
Confidence 3444555555555544 2332 22 45555555555555554333 5566666666776666653 22 1333333
Q ss_pred cCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccC
Q 002360 702 ADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRI 781 (931)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i 781 (931)
|+.|++++|++++. +.+..+++|++|++++|++++.
T Consensus 114 -----------------------------------------L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~- 149 (291)
T 1h6t_A 114 -----------------------------------------LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI- 149 (291)
T ss_dssp -----------------------------------------CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-
T ss_pred -----------------------------------------CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-
Confidence 36777777777753 4688899999999999999954
Q ss_pred CcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCCCCccCcccccccCCCCCCCCCCC
Q 002360 782 PDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGNDLCGAPLS 854 (931)
Q Consensus 782 p~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~l~~~~~~ 854 (931)
..++.+++|+.|++++|++++..| +..+++|+.|++++|++++ +|....+..+...++.+|.+...|..
T Consensus 150 -~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 150 -TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEEEEECCCEE
T ss_pred -hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEECcCCcccCCccc
Confidence 579999999999999999997666 8999999999999999987 45555677777788888876655443
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=2.7e-18 Score=199.09 Aligned_cols=187 Identities=18% Similarity=0.308 Sum_probs=94.7
Q ss_pred EECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcc
Q 002360 557 LKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENEL 636 (931)
Q Consensus 557 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 636 (931)
+.+..+.+.+..+ +..+++|+.|++++|.+.. +| .+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|++
T Consensus 26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 26 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred HhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence 3444444443322 2344555555555555542 22 34555555555555555554433 55555555555555555
Q ss_pred cccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcccccccc
Q 002360 637 VGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFS 716 (931)
Q Consensus 637 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~ 716 (931)
. .+| .+. .+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++++. ..+..+++
T Consensus 100 ~-~l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~------------------ 154 (605)
T 1m9s_A 100 K-DLS-SLK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTK------------------ 154 (605)
T ss_dssp C-CCT-TST-TCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTT------------------
T ss_pred C-CCh-hhc-cCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCC------------------
Confidence 4 233 222 455555555555555532 2345555555555555555532 22332222
Q ss_pred CCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEec
Q 002360 717 GDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDF 796 (931)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdL 796 (931)
|+.|+|++|++++.+| +..+++|+.|+|++|+|++ +| .+..+++|+.|+|
T Consensus 155 --------------------------L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L 204 (605)
T 1m9s_A 155 --------------------------LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLEL 204 (605)
T ss_dssp --------------------------CSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEC
T ss_pred --------------------------CCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEc
Confidence 2555556665554444 5555666666666666653 22 3555666666666
Q ss_pred cCCcCccc
Q 002360 797 SANQLSGQ 804 (931)
Q Consensus 797 s~N~l~~~ 804 (931)
++|++++.
T Consensus 205 ~~N~l~~~ 212 (605)
T 1m9s_A 205 FSQECLNK 212 (605)
T ss_dssp CSEEEECC
T ss_pred cCCcCcCC
Confidence 66665543
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=1.6e-17 Score=167.63 Aligned_cols=154 Identities=16% Similarity=0.236 Sum_probs=102.4
Q ss_pred CEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccC
Q 002360 579 RTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRS 658 (931)
Q Consensus 579 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~ 658 (931)
+.++++++.++ .+|..+. ++|++|++++|++++..+..|..+ ++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l-------------------------~~L~~L~Ls~ 65 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPY-------------------------KKLRRIDLSN 65 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTC-------------------------TTCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCC-------------------------CCCCEEECCC
Confidence 45666666665 4454432 455555555555554444444444 4455555555
Q ss_pred ccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhh
Q 002360 659 NKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNS 738 (931)
Q Consensus 659 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (931)
|++++..|..|..+++|+.|+|++|++++..+..|.++++|
T Consensus 66 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L--------------------------------------- 106 (220)
T 2v9t_B 66 NQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL--------------------------------------- 106 (220)
T ss_dssp SCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC---------------------------------------
T ss_pred CcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCC---------------------------------------
Confidence 55554555566666677777777777764444444444443
Q ss_pred hccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCccc
Q 002360 739 ILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQ 804 (931)
Q Consensus 739 ~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ 804 (931)
+.|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++.+.
T Consensus 107 -----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 107 -----QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp -----CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred -----CEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 6777777777777777888888999999999999877777888899999999999988754
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=7.4e-20 Score=210.96 Aligned_cols=154 Identities=21% Similarity=0.237 Sum_probs=103.2
Q ss_pred CccccchhhccCCCCcEEe-cCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccC
Q 002360 612 LSGVIPTSFKNFSILEALD-VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIP 690 (931)
Q Consensus 612 l~~~~p~~~~~l~~L~~L~-L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 690 (931)
..+..|..+..+++|+.|+ ++.|.+. .|+.+.+++|.+....+ ..|+.|+|++|++++ +|
T Consensus 397 ~~~~~~~~l~~l~~L~~L~~l~~n~~~------------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp 457 (567)
T 1dce_A 397 PLLYEKETLQYFSTLKAVDPMRAAYLD------------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LC 457 (567)
T ss_dssp TGGGHHHHHHHHHHHHHHCGGGHHHHH------------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CC
T ss_pred cccCCHHHHHHHHhcccCcchhhcccc------------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-Cc
Confidence 4456666777777777776 5555432 23333444555543221 236777777777774 45
Q ss_pred ccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEE
Q 002360 691 RCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSL 770 (931)
Q Consensus 691 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L 770 (931)
. +++++.| +.|+|++|+++ .+|..++.+++|+.|
T Consensus 458 ~-~~~l~~L--------------------------------------------~~L~Ls~N~l~-~lp~~~~~l~~L~~L 491 (567)
T 1dce_A 458 H-LEQLLLV--------------------------------------------THLDLSHNRLR-ALPPALAALRCLEVL 491 (567)
T ss_dssp C-GGGGTTC--------------------------------------------CEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred C-ccccccC--------------------------------------------cEeecCccccc-ccchhhhcCCCCCEE
Confidence 4 5555444 67777777777 677777777888888
Q ss_pred EccCCcCcccCCcCccCcCCCCEEeccCCcCcccC-cccccCCCCCCeeeCCCccccccCCCC
Q 002360 771 NLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI-PQSMSNLSFLNYLNLSNNNLNGEIPSS 832 (931)
Q Consensus 771 ~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~g~ip~~ 832 (931)
+|++|+|++ +| .++.+++|+.|+|++|++++.+ |..+..+++|+.|+|++|++++.+|..
T Consensus 492 ~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 492 QASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp ECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred ECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 888887774 66 6777778888888888887766 777777788888888888877776643
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.1e-17 Score=183.27 Aligned_cols=131 Identities=23% Similarity=0.245 Sum_probs=111.8
Q ss_pred ccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCccc-CCCCCCEEEccCCcCccccchhhccCCCCcEEecC
Q 002360 554 IEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIG-TLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVG 632 (931)
Q Consensus 554 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 632 (931)
-+.+++++++++. +|..+. +.++.|+|++|++++..+..+. ++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 20 ~~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 3689999999987 565443 4689999999999988787787 89999999999999998888889999999999999
Q ss_pred CCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccc
Q 002360 633 ENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGT 688 (931)
Q Consensus 633 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 688 (931)
+|+++ .++...+..+++|++|+|++|++++..|..|..+++|+.|+|++|++++.
T Consensus 97 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 97 SNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF 151 (361)
T ss_dssp SSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred CCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCee
Confidence 99998 45554445799999999999999988888999999999999999998843
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=5.3e-17 Score=165.09 Aligned_cols=155 Identities=21% Similarity=0.311 Sum_probs=92.4
Q ss_pred CEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccC
Q 002360 579 RTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRS 658 (931)
Q Consensus 579 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~ 658 (931)
+.++.+++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|++. .+|...+..+++|++|+|++
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCC
Confidence 34555555554 3444332 55666666666666555555555566666666666554 34433322344444444444
Q ss_pred ccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhh
Q 002360 659 NKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNS 738 (931)
Q Consensus 659 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (931)
|++++..+..+..+++|
T Consensus 98 N~l~~l~~~~~~~l~~L--------------------------------------------------------------- 114 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHL--------------------------------------------------------------- 114 (229)
T ss_dssp SCCCCCCTTTTTTCTTC---------------------------------------------------------------
T ss_pred CcCCccChhHhCcchhh---------------------------------------------------------------
Confidence 44443333333444444
Q ss_pred hccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCc
Q 002360 739 ILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIP 806 (931)
Q Consensus 739 ~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p 806 (931)
+.|+|++|+++ .+|..+..+++|++|+|++|++++..+..|..+++|+.|++++|++++..+
T Consensus 115 -----~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 115 -----KELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp -----CEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred -----CeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 44555555555 566667778888888888888886666778888899999999998886654
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=1.3e-17 Score=165.48 Aligned_cols=153 Identities=14% Similarity=0.188 Sum_probs=86.2
Q ss_pred CCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCcccccccccccc
Q 002360 623 FSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATA 702 (931)
Q Consensus 623 l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~ 702 (931)
+++|+.|++++|.+. .+| .+. .+++|++|++++|.+. .+..+..+++|+.|++++|++++..|..+..+++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--- 114 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL--- 114 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC---
T ss_pred cCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCC---
Confidence 334444444444444 333 222 3445555555555332 12244555666666666666655555555444433
Q ss_pred CCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCC
Q 002360 703 DSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIP 782 (931)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 782 (931)
+.|++++|++++..|..++.+++|++|++++|++.+.+|
T Consensus 115 -----------------------------------------~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 115 -----------------------------------------TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp -----------------------------------------CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred -----------------------------------------CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH
Confidence 566666666666566666777777777777776333555
Q ss_pred cCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccc
Q 002360 783 DNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNG 827 (931)
Q Consensus 783 ~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 827 (931)
.++.+++|+.|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus 154 -~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 154 -PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred -hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 46777777777777777765 33 56777777777777777653
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=1.2e-17 Score=164.73 Aligned_cols=87 Identities=23% Similarity=0.317 Sum_probs=53.0
Q ss_pred eEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCc
Q 002360 744 RSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNN 823 (931)
Q Consensus 744 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N 823 (931)
+.|+|++|++++.+|..|..+++|++|+|++|++++..|..|+.+++|++|+|++|++++.+|..+..+++|++|++++|
T Consensus 57 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 55555555555555555666666666666666666555555666666666666666666666666666666666666666
Q ss_pred cccccCC
Q 002360 824 NLNGEIP 830 (931)
Q Consensus 824 ~l~g~ip 830 (931)
+++|.+|
T Consensus 137 ~l~c~c~ 143 (192)
T 1w8a_A 137 PFNCNCH 143 (192)
T ss_dssp CBCCSGG
T ss_pred CccCcCc
Confidence 6665554
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=3.5e-17 Score=189.74 Aligned_cols=171 Identities=22% Similarity=0.321 Sum_probs=131.3
Q ss_pred CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360 551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD 630 (931)
Q Consensus 551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 630 (931)
+++|+.|++++|.+... + .+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.+.+. ..+..+++|+.|+
T Consensus 42 L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEE
Confidence 46788888888888763 3 47778888888888888886544 77888888888888888753 3678888888888
Q ss_pred cCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcc
Q 002360 631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSD 710 (931)
Q Consensus 631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 710 (931)
|++|++.+ ++. +. .+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+..| +..++.|
T Consensus 116 Ls~N~l~~-l~~-l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L----------- 177 (605)
T 1m9s_A 116 LEHNGISD-ING-LV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL----------- 177 (605)
T ss_dssp CTTSCCCC-CGG-GG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTC-----------
T ss_pred ecCCCCCC-Ccc-cc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCC-----------
Confidence 88888874 443 43 688888888888888865 567788888888888888886655 5554444
Q ss_pred ccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCccc
Q 002360 711 ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGR 780 (931)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 780 (931)
+.|+|++|++++. +.+..+++|+.|+|++|++++.
T Consensus 178 ---------------------------------~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 178 ---------------------------------QNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ---------------------------------CEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred ---------------------------------CEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 7888888888853 3588888888888888888754
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=7.3e-19 Score=202.66 Aligned_cols=105 Identities=26% Similarity=0.394 Sum_probs=92.1
Q ss_pred eeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCC
Q 002360 743 VRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSN 822 (931)
Q Consensus 743 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~ 822 (931)
|+.|+|++|++++ +|. ++.+++|+.|+|++|+|+ .+|..++.+++|+.|+|++|++++ +| .+..+++|++|+|++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 5789999999986 676 999999999999999999 889999999999999999999996 67 899999999999999
Q ss_pred ccccccC-CCC-CccCcccccccCCCCCCCCC
Q 002360 823 NNLNGEI-PSS-TQLQSFDASSFAGNDLCGAP 852 (931)
Q Consensus 823 N~l~g~i-p~~-~~~~~~~~~~~~~n~l~~~~ 852 (931)
|++++.+ |.. ..+..+...++++|.+++.|
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 9999886 654 56777888889999887754
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=3.4e-17 Score=162.46 Aligned_cols=154 Identities=21% Similarity=0.248 Sum_probs=100.1
Q ss_pred CCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCE
Q 002360 598 TLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQI 677 (931)
Q Consensus 598 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 677 (931)
.+++|++|++++|.++ .+| .+..+++|++|++++|.+. .++ .+. .+++|++|++++|++++..+..+..+++|+.
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hhh-cCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 3445555555555555 223 3555555666666666443 222 333 5667777777777776666667777777777
Q ss_pred EEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccC
Q 002360 678 LDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEI 757 (931)
Q Consensus 678 L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~i 757 (931)
|++++|++++..|..+..+++| +.|++++|++.+.+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L--------------------------------------------~~L~L~~n~~i~~~ 152 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKV--------------------------------------------NSIDLSYNGAITDI 152 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSC--------------------------------------------CEEECCSCTBCCCC
T ss_pred EEecCCccCcHhHHHHhhCCCC--------------------------------------------CEEEccCCCCcccc
Confidence 8887777776666666555444 67788888733355
Q ss_pred CccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcc
Q 002360 758 PVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG 803 (931)
Q Consensus 758 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~ 803 (931)
| .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 153 ~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 153 M-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp G-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred H-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 5 68888889999999999884 55 68888999999999998764
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=3.8e-18 Score=203.22 Aligned_cols=193 Identities=21% Similarity=0.184 Sum_probs=119.0
Q ss_pred EEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCc
Q 002360 556 FLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENE 635 (931)
Q Consensus 556 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 635 (931)
.++++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|.++++|++|+|++|.
T Consensus 205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred Ccccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence 3445555554 45777888899999999999988 67777778999999999999998 778888999999999999999
Q ss_pred ccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccc
Q 002360 636 LVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAF 715 (931)
Q Consensus 636 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~ 715 (931)
++ .+|..+. .+++|++|+|++|.++ .+|..|+.+++|+.|+|++|++++.+|..+..+...
T Consensus 282 l~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~---------------- 342 (727)
T 4b8c_D 282 LT-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT---------------- 342 (727)
T ss_dssp CS-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHH----------------
T ss_pred CC-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchh----------------
Confidence 98 8888876 7899999999999987 678889999999999999999998888776554322
Q ss_pred cCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCC--------cCcccCCcCccC
Q 002360 716 SGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHN--------LFTGRIPDNIGV 787 (931)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N--------~l~~~ip~~l~~ 787 (931)
...++|++|.++|.+|.. |+.|++++| .+.+.++..+..
T Consensus 343 ---------------------------~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~ 389 (727)
T 4b8c_D 343 ---------------------------GLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATD 389 (727)
T ss_dssp ---------------------------HHHHHHHHCCCCCCCCCC-----------------------------------
T ss_pred ---------------------------hhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhc
Confidence 023678888888888764 446667776 444444555566
Q ss_pred cCCCCEEeccCCcCcc
Q 002360 788 MRSIESLDFSANQLSG 803 (931)
Q Consensus 788 l~~L~~LdLs~N~l~~ 803 (931)
+..++...+++|-+.+
T Consensus 390 l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 390 LAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp ------------CCCG
T ss_pred ccccceeeeecccccc
Confidence 6667777777777653
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.3e-17 Score=171.57 Aligned_cols=79 Identities=19% Similarity=0.405 Sum_probs=49.6
Q ss_pred eEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCc
Q 002360 744 RSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNN 823 (931)
Q Consensus 744 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N 823 (931)
+.|+|++|++++ ++ .+..+++|++|+|++|++++ +| .++.+++|+.|++++|++++. ..+..+++|+.|++++|
T Consensus 109 ~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 109 SRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEE
T ss_pred cEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCC
Confidence 556666666653 22 46666666666666666663 33 466666677777777766655 45666667777777777
Q ss_pred ccccc
Q 002360 824 NLNGE 828 (931)
Q Consensus 824 ~l~g~ 828 (931)
++++.
T Consensus 183 ~~~~~ 187 (263)
T 1xeu_A 183 KCVNE 187 (263)
T ss_dssp EEECC
T ss_pred cccCC
Confidence 66654
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=5e-17 Score=160.29 Aligned_cols=155 Identities=21% Similarity=0.273 Sum_probs=119.3
Q ss_pred cEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCc-ccCCCCCcCEEEccCCccccccCccccccccccccCCC
Q 002360 627 EALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPI-QLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSS 705 (931)
Q Consensus 627 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 705 (931)
+++++++|.++ .+|..+. .++++|++++|++++..+. .+..+++|+.|+|++|++++..|..|.+++.|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------ 80 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------ 80 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence 56777777775 6776543 3788888888888766554 47788888888888888888778777776665
Q ss_pred CCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCc
Q 002360 706 DQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI 785 (931)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l 785 (931)
+.|+|++|++++..|..|..+++|++|+|++|++++.+|..|
T Consensus 81 --------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 122 (192)
T 1w8a_A 81 --------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF 122 (192)
T ss_dssp --------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS
T ss_pred --------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh
Confidence 788899999988888889999999999999999999999999
Q ss_pred cCcCCCCEEeccCCcCcccCccc-ccCCCCCCeeeCCCccccccCCC
Q 002360 786 GVMRSIESLDFSANQLSGQIPQS-MSNLSFLNYLNLSNNNLNGEIPS 831 (931)
Q Consensus 786 ~~l~~L~~LdLs~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip~ 831 (931)
+.+++|++|+|++|++++..+.. +. ..++...+..+...+..|.
T Consensus 123 ~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 123 EHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp TTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSST
T ss_pred hcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCCCCCCh
Confidence 99999999999999999876521 11 1233334555666665554
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=5.5e-18 Score=201.86 Aligned_cols=222 Identities=17% Similarity=0.170 Sum_probs=124.5
Q ss_pred CCccEEECcCCccccccCCcccCCCC-----CCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCC
Q 002360 552 KNIEFLKLSTNHFSEGIPDCWMNWPR-----LRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSIL 626 (931)
Q Consensus 552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~-----L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 626 (931)
+.++.|+|.+|.+... +..+..... +..++++.|.+. ..|..+..++.|+.|+|++|.+. .+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 3456666666666552 222111111 222334444444 55778889999999999999998 667677799999
Q ss_pred cEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCC
Q 002360 627 EALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSD 706 (931)
Q Consensus 627 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~ 706 (931)
++|+|++|.++ .+|..+. .+++|++|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..|+++++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L------- 318 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL------- 318 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC-------
T ss_pred CEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc-------
Confidence 99999999999 8998886 7999999999999999 77999999999999999999997 778878777666
Q ss_pred CCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCC-CEEEccCCcCcccCCcCc
Q 002360 707 QSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGL-QSLNLSHNLFTGRIPDNI 785 (931)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L-~~L~Ls~N~l~~~ip~~l 785 (931)
+.|+|++|.|++.+|..+..+... ..|+|++|.++|.+|..
T Consensus 319 -------------------------------------~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~- 360 (727)
T 4b8c_D 319 -------------------------------------QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE- 360 (727)
T ss_dssp -------------------------------------CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred -------------------------------------cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc-
Confidence 789999999999999888665322 34889999999998874
Q ss_pred cCcCCCCEEeccCC--------cCcccCcccccCCCCCCeeeCCCccccccCC
Q 002360 786 GVMRSIESLDFSAN--------QLSGQIPQSMSNLSFLNYLNLSNNNLNGEIP 830 (931)
Q Consensus 786 ~~l~~L~~LdLs~N--------~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 830 (931)
|+.|++++| .+.+..+..+..+..+....+++|-+.+...
T Consensus 361 -----l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~ 408 (727)
T 4b8c_D 361 -----RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYA 408 (727)
T ss_dssp ----------------------------------------------CCCGGGC
T ss_pred -----cceeEeecccccccccCCccccccchhhcccccceeeeeccccccccC
Confidence 566777777 5555556666777788888999998875443
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=2e-17 Score=171.95 Aligned_cols=168 Identities=21% Similarity=0.298 Sum_probs=93.8
Q ss_pred CccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecC
Q 002360 553 NIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVG 632 (931)
Q Consensus 553 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 632 (931)
++..+++++|.+++.. .+..+++|+.|++++|.++ .+| .+..+++|++|++++|++++..+ +..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 4555556666655432 3455566666666666655 233 45555566666666665554433 5555555555555
Q ss_pred CCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcccc
Q 002360 633 ENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDIL 712 (931)
Q Consensus 633 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~ 712 (931)
+|+++ .+|.. .. ++|+.|++++|++++. + .+..+++
T Consensus 94 ~N~l~-~l~~~--------------------------~~-~~L~~L~L~~N~l~~~-~-~l~~l~~-------------- 129 (263)
T 1xeu_A 94 RNRLK-NLNGI--------------------------PS-ACLSRLFLDNNELRDT-D-SLIHLKN-------------- 129 (263)
T ss_dssp SSCCS-CCTTC--------------------------CC-SSCCEEECCSSCCSBS-G-GGTTCTT--------------
T ss_pred CCccC-CcCcc--------------------------cc-CcccEEEccCCccCCC-h-hhcCccc--------------
Confidence 55554 23321 11 4555555555555432 1 2333222
Q ss_pred ccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCC
Q 002360 713 YAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE 792 (931)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 792 (931)
|+.|+|++|++++. | .++.+++|++|+|++|++++. ..+..+++|+
T Consensus 130 ------------------------------L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~ 175 (263)
T 1xeu_A 130 ------------------------------LEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVN 175 (263)
T ss_dssp ------------------------------CCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCC
T ss_pred ------------------------------ccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCC
Confidence 25566666666543 3 466677777777777777754 5567777777
Q ss_pred EEeccCCcCccc
Q 002360 793 SLDFSANQLSGQ 804 (931)
Q Consensus 793 ~LdLs~N~l~~~ 804 (931)
.|++++|++++.
T Consensus 176 ~L~l~~N~~~~~ 187 (263)
T 1xeu_A 176 WIDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEEECC
T ss_pred EEeCCCCcccCC
Confidence 777777777755
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=1.9e-15 Score=148.75 Aligned_cols=131 Identities=21% Similarity=0.257 Sum_probs=100.8
Q ss_pred cEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeec
Q 002360 652 MILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKG 731 (931)
Q Consensus 652 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (931)
+.+++++|.++ .+|..+ .++|+.|++++|+++ .+|..|.+++.|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L-------------------------------- 56 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHL-------------------------------- 56 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTC--------------------------------
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCC--------------------------------
Confidence 45566666655 344433 246777777777776 566666555544
Q ss_pred chhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccC
Q 002360 732 FLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN 811 (931)
Q Consensus 732 ~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~ 811 (931)
+.|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..
T Consensus 57 ------------~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~ 124 (193)
T 2wfh_A 57 ------------TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFND 124 (193)
T ss_dssp ------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred ------------CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhc
Confidence 77888888888777778888999999999999999888888999999999999999999777777888
Q ss_pred CCCCCeeeCCCccccccCC
Q 002360 812 LSFLNYLNLSNNNLNGEIP 830 (931)
Q Consensus 812 l~~L~~L~ls~N~l~g~ip 830 (931)
+++|+.|++++|++.|...
T Consensus 125 l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 125 LSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CTTCCEEECCSSCEECSGG
T ss_pred CccccEEEeCCCCeecCCc
Confidence 9999999999999987653
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1e-15 Score=147.51 Aligned_cols=132 Identities=18% Similarity=0.261 Sum_probs=84.8
Q ss_pred CcCcEEEccCcccc-ccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeE
Q 002360 649 SRLMILILRSNKFH-GDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSL 727 (931)
Q Consensus 649 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (931)
++|++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..++.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~----------------------------- 72 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPK----------------------------- 72 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSS-----------------------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCC-----------------------------
Confidence 45556666666555 45555555566666666666666543 33333333
Q ss_pred EeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccC-CcCccCcCCCCEEeccCCcCcccCc
Q 002360 728 VMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRI-PDNIGVMRSIESLDFSANQLSGQIP 806 (931)
Q Consensus 728 ~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~LdLs~N~l~~~~p 806 (931)
|+.|+|++|++++.+|..+..+++|++|+|++|++++.. +..++.+++|++|++++|++++..+
T Consensus 73 ---------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 73 ---------------LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp ---------------CCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred ---------------CCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence 256666666666556666666777777777777777432 2567777777777887777775544
Q ss_pred ---ccccCCCCCCeeeCCCcccc
Q 002360 807 ---QSMSNLSFLNYLNLSNNNLN 826 (931)
Q Consensus 807 ---~~l~~l~~L~~L~ls~N~l~ 826 (931)
..+..+++|++|++++|.+.
T Consensus 138 ~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 138 YRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHHHHTTCSSCCEETTEETTSC
T ss_pred HHHHHHHhCccCcEecCCCCChh
Confidence 46777778888888877765
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=7.5e-16 Score=145.18 Aligned_cols=129 Identities=19% Similarity=0.250 Sum_probs=101.5
Q ss_pred cCcCcEEEccCcccc-ccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCcccccee
Q 002360 648 FSRLMILILRSNKFH-GDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTS 726 (931)
Q Consensus 648 l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (931)
.++|+.|++++|.++ +.+|..+..+++|+.|++++|++++. ..+.+++.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~---------------------------- 65 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNK---------------------------- 65 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTT----------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCC----------------------------
Confidence 467788888888887 67777778888888888888888754 44444444
Q ss_pred EEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCccc-CCcCccCcCCCCEEeccCCcCcccC
Q 002360 727 LVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGR-IPDNIGVMRSIESLDFSANQLSGQI 805 (931)
Q Consensus 727 ~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~LdLs~N~l~~~~ 805 (931)
|+.|++++|.+++.+|..++.+++|++|++++|++++. .|..++.+++|++|++++|++++..
T Consensus 66 ----------------L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 66 ----------------LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp ----------------CCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred ----------------CCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence 37888888888877888888888999999999998863 3477888999999999999998766
Q ss_pred c---ccccCCCCCCeeeCCC
Q 002360 806 P---QSMSNLSFLNYLNLSN 822 (931)
Q Consensus 806 p---~~l~~l~~L~~L~ls~ 822 (931)
+ ..+..+++|++||+++
T Consensus 130 ~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 130 DYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp THHHHHHHHCTTCCEETTBC
T ss_pred HHHHHHHHHCCCcccccCCC
Confidence 6 5788889999998864
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=3.2e-15 Score=145.38 Aligned_cols=87 Identities=18% Similarity=0.186 Sum_probs=68.5
Q ss_pred eEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCc
Q 002360 744 RSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNN 823 (931)
Q Consensus 744 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N 823 (931)
+.|++++|++++..+..+..+++|++|++++|++++..+..++.+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 55 TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 56666777766555556778888888888888888777777788888888888888888666666788888888888888
Q ss_pred cccccCC
Q 002360 824 NLNGEIP 830 (931)
Q Consensus 824 ~l~g~ip 830 (931)
+++|.+|
T Consensus 135 ~~~~~~~ 141 (177)
T 2o6r_A 135 PWDCSCP 141 (177)
T ss_dssp CBCCCHH
T ss_pred CeeccCc
Confidence 8888766
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=1.9e-15 Score=145.59 Aligned_cols=138 Identities=18% Similarity=0.203 Sum_probs=104.2
Q ss_pred CCCCcEEecCCCccc-ccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccc
Q 002360 623 FSILEALDVGENELV-GSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMAT 701 (931)
Q Consensus 623 l~~L~~L~L~~N~l~-~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 701 (931)
.++|+.|++++|.++ +.+|..+. .+++|++|++++|.+++. ..+..+++|+.|++++|++++.+|..+.++++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-- 97 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL-- 97 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC--
T ss_pred cccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC--
Confidence 356777777777776 56666544 577778888888777755 667788888888888888887677666555554
Q ss_pred cCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccC-CccccCCCCCCEEEccCCcCccc
Q 002360 702 ADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEI-PVEVTNLQGLQSLNLSHNLFTGR 780 (931)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~~~ 780 (931)
+.|+|++|++++.. +..+..+++|++|++++|.+++.
T Consensus 98 ------------------------------------------~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 98 ------------------------------------------THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp ------------------------------------------CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred ------------------------------------------CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch
Confidence 78888888888532 26788899999999999999855
Q ss_pred CC---cCccCcCCCCEEeccCCcCcccCccc
Q 002360 781 IP---DNIGVMRSIESLDFSANQLSGQIPQS 808 (931)
Q Consensus 781 ip---~~l~~l~~L~~LdLs~N~l~~~~p~~ 808 (931)
.+ ..+..+++|++||+++|.+. .+|.+
T Consensus 136 ~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 136 NDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp TTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred HHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 54 47888999999999999987 45543
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=7.1e-16 Score=166.56 Aligned_cols=100 Identities=15% Similarity=0.085 Sum_probs=60.4
Q ss_pred cCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCC-EEEccCCcCCCccchhhhcccccccee
Q 002360 345 YELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLE-SLDLSNNKLNGTVSEIHFVNLTKLVSF 423 (931)
Q Consensus 345 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~l~~L~~L 423 (931)
++|+++++++|+++...+.+|.++++|+++++.+| +....+.+|.++++|+ .+++.+ +++ .++...|.++++|+.+
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYV 302 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEE
Confidence 56777777766666666666667777777777665 5545555666666676 666666 443 4444556666666666
Q ss_pred ccCCceeEEecCCCCCCCccccEE
Q 002360 424 LANANSLIFKINPNWVPPFQLTVL 447 (931)
Q Consensus 424 ~l~~n~l~~~~~~~~~~~~~L~~L 447 (931)
+++.|.+.......|..+++|+.+
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEE
T ss_pred EeCCCccCccchhhhcCCcchhhh
Confidence 655555555554455444444444
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=3.5e-15 Score=161.15 Aligned_cols=240 Identities=12% Similarity=0.058 Sum_probs=135.4
Q ss_pred CccccEEEcccCCCc--cccchhhhccCCCCCCccEEECcCCccccccCCcccC--------CCCCCEEecCCCcceecC
Q 002360 523 LLLGSIFDLSNNALS--GSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMN--------WPRLRTLNLGNNNFTGSL 592 (931)
Q Consensus 523 ~~~l~~l~ls~n~l~--~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~ 592 (931)
+.+|+.+|+++|++. ...... .+.+..+.+..|. +.+.+|.+ +++|+.|++.+ .++.+-
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~-------~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~ 116 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGT-------YPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIE 116 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSS-------SGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEEC
T ss_pred hccCeEEecCcceeEEecCcccc-------ccccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchh
Confidence 367888888888877 211111 1223444444443 23456666 88888888888 777666
Q ss_pred CCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCccc---ccCchhHHhhcCcCc-----------------
Q 002360 593 PMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELV---GSIPTWIGERFSRLM----------------- 652 (931)
Q Consensus 593 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~---~~~p~~~~~~l~~L~----------------- 652 (931)
+.+|.+|++|+.+++++|.+..+.+..|.++.++..+.+..+... ..+....+..+..|+
T Consensus 117 ~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~ 196 (329)
T 3sb4_A 117 DAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMK 196 (329)
T ss_dssp TTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHH
T ss_pred HHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhh
Confidence 777888888888888888887777778888777777776663321 011111111233333
Q ss_pred ---------EEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCcccc
Q 002360 653 ---------ILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVE 723 (931)
Q Consensus 653 ---------~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~ 723 (931)
.+.+.++-...........+++|+.++|++|+++...+.+|.++++|
T Consensus 197 ~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L------------------------ 252 (329)
T 3sb4_A 197 AGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL------------------------ 252 (329)
T ss_dssp TTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC------------------------
T ss_pred cccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC------------------------
Confidence 22222221110000000124566666666666654444455554444
Q ss_pred ceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCC-EEEccCCcCcccCCcCccCcCCCCEEeccCCcCc
Q 002360 724 DTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQ-SLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS 802 (931)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~-~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~ 802 (931)
+.|+|++| ++...+..|.++++|+ .+++.+ .++..-+.+|.++++|+.+++++|+++
T Consensus 253 --------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 253 --------------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp --------------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred --------------------CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 55666665 5544455566666666 666666 555444556666666666666666666
Q ss_pred ccCcccccCCCCCCeee
Q 002360 803 GQIPQSMSNLSFLNYLN 819 (931)
Q Consensus 803 ~~~p~~l~~l~~L~~L~ 819 (931)
...+..|.++++|+.++
T Consensus 311 ~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 311 TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECTTTTCTTCCCCEEE
T ss_pred ccchhhhcCCcchhhhc
Confidence 55555666666666554
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=143.24 Aligned_cols=129 Identities=19% Similarity=0.256 Sum_probs=101.2
Q ss_pred cEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCC
Q 002360 627 EALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSD 706 (931)
Q Consensus 627 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~ 706 (931)
+++++++|.++ .+|..+ .++|++|++++|.++ .+|..+..+++|+.|+|++|++++..+..|.+++.|
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L------- 80 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL------- 80 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-------
Confidence 45667777766 566543 246777777777776 566677778888888888888887666667666555
Q ss_pred CCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCcc
Q 002360 707 QSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIG 786 (931)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~ 786 (931)
+.|+|++|++++..|..|..+++|++|+|++|++++..+..|.
T Consensus 81 -------------------------------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~ 123 (193)
T 2wfh_A 81 -------------------------------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFN 123 (193)
T ss_dssp -------------------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred -------------------------------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhh
Confidence 7788888888877778899999999999999999976666799
Q ss_pred CcCCCCEEeccCCcCccc
Q 002360 787 VMRSIESLDFSANQLSGQ 804 (931)
Q Consensus 787 ~l~~L~~LdLs~N~l~~~ 804 (931)
.+++|+.|++++|++.+.
T Consensus 124 ~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 124 DLSALSHLAIGANPLYCD 141 (193)
T ss_dssp TCTTCCEEECCSSCEECS
T ss_pred cCccccEEEeCCCCeecC
Confidence 999999999999999764
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=1.8e-14 Score=140.15 Aligned_cols=133 Identities=18% Similarity=0.164 Sum_probs=107.5
Q ss_pred CcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCC
Q 002360 626 LEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSS 705 (931)
Q Consensus 626 L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 705 (931)
.+.+++++|.++ .+|..+ .++|+.|++++|++++..+..+..+++|+.|++++|++++..+..+.+++.|
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------ 78 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL------ 78 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc------
Confidence 456777777776 566543 4678888888888887666677888899999999998886666556665554
Q ss_pred CCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCc
Q 002360 706 DQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI 785 (931)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l 785 (931)
+.|+|++|++++..+..+..+++|++|++++|++++..+..+
T Consensus 79 --------------------------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 120 (177)
T 2o6r_A 79 --------------------------------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF 120 (177)
T ss_dssp --------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred --------------------------------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh
Confidence 789999999997777778999999999999999997666667
Q ss_pred cCcCCCCEEeccCCcCcccCc
Q 002360 786 GVMRSIESLDFSANQLSGQIP 806 (931)
Q Consensus 786 ~~l~~L~~LdLs~N~l~~~~p 806 (931)
..+++|++|++++|++++..|
T Consensus 121 ~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 121 DRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcccCEEEecCCCeeccCc
Confidence 899999999999999998765
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=8.2e-15 Score=138.00 Aligned_cols=129 Identities=19% Similarity=0.153 Sum_probs=105.7
Q ss_pred CCCccEEECcCCccc-cccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEE
Q 002360 551 SKNIEFLKLSTNHFS-EGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEAL 629 (931)
Q Consensus 551 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 629 (931)
.++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 367889999999988 66788888899999999999998865 678888999999999999988788888888999999
Q ss_pred ecCCCccccc-CchhHHhhcCcCcEEEccCccccccCC---cccCCCCCcCEEEccC
Q 002360 630 DVGENELVGS-IPTWIGERFSRLMILILRSNKFHGDFP---IQLCRLASLQILDVAY 682 (931)
Q Consensus 630 ~L~~N~l~~~-~p~~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls~ 682 (931)
++++|++++. .+..+. .+++|++|++++|++++..+ ..+..+++|+.||+++
T Consensus 94 ~ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999998752 224444 78889999999998887655 4677888888888764
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=2.8e-16 Score=156.00 Aligned_cols=154 Identities=21% Similarity=0.282 Sum_probs=98.7
Q ss_pred ccCCCCcEEecCCCcccccCch------hHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCcccc
Q 002360 621 KNFSILEALDVGENELVGSIPT------WIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCIN 694 (931)
Q Consensus 621 ~~l~~L~~L~L~~N~l~~~~p~------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 694 (931)
.....++.++++.+.+.|.+|. .+. .+++|++|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+.
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 3444555555555555555443 444 56677777777776665 45 6666677777777777766 4454443
Q ss_pred ccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccC
Q 002360 695 NFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSH 774 (931)
Q Consensus 695 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~ 774 (931)
.+++ |+.|++++|++++ +| .+..+++|++|++++
T Consensus 91 ~~~~--------------------------------------------L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~ 124 (198)
T 1ds9_A 91 VADT--------------------------------------------LEELWISYNQIAS-LS-GIEKLVNLRVLYMSN 124 (198)
T ss_dssp HHHH--------------------------------------------CSEEEEEEEECCC-HH-HHHHHHHSSEEEESE
T ss_pred cCCc--------------------------------------------CCEEECcCCcCCc-CC-ccccCCCCCEEECCC
Confidence 3333 3677777777775 34 577777788888888
Q ss_pred CcCcccCC-cCccCcCCCCEEeccCCcCcccCccc----------ccCCCCCCeeeCCCcccc
Q 002360 775 NLFTGRIP-DNIGVMRSIESLDFSANQLSGQIPQS----------MSNLSFLNYLNLSNNNLN 826 (931)
Q Consensus 775 N~l~~~ip-~~l~~l~~L~~LdLs~N~l~~~~p~~----------l~~l~~L~~L~ls~N~l~ 826 (931)
|++++..+ ..+..+++|++|++++|++++.+|.. +..+++|++|| +|+++
T Consensus 125 N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 87774222 35777778888888888887766653 67778888777 56554
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.49 E-value=6.7e-13 Score=146.05 Aligned_cols=218 Identities=11% Similarity=0.098 Sum_probs=142.9
Q ss_pred CccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecC
Q 002360 553 NIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVG 632 (931)
Q Consensus 553 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 632 (931)
+|+.+.+.. .++.+.+.+|.+|++|+.+++++|+++.....+|. +++|+.+.+..+ ++.+....|.++++|+.+++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 467777765 56666667788888888888888888765555665 578888888744 666677778888888888887
Q ss_pred CCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccc-----cccCccccccccccccCCCCC
Q 002360 633 ENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLL-----GTIPRCINNFSAMATADSSDQ 707 (931)
Q Consensus 633 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~~~~~~~ 707 (931)
+| ++ .++...|.+ .+|+.+.+ .+.++..-+.+|.++++|+.+++.+|.+. ...+.+|.++++|
T Consensus 235 ~~-l~-~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L-------- 302 (401)
T 4fdw_A 235 EN-VS-TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL-------- 302 (401)
T ss_dssp TT-CC-EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC--------
T ss_pred CC-cc-Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC--------
Confidence 65 44 566666644 67888888 34455556677788888888888777664 2223344444443
Q ss_pred CccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccC
Q 002360 708 SSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV 787 (931)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~ 787 (931)
+.++|. +.++..-...|.++++|+.++|..| ++..-+.+|.+
T Consensus 303 ------------------------------------~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~ 344 (401)
T 4fdw_A 303 ------------------------------------ARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNN 344 (401)
T ss_dssp ------------------------------------CEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSS
T ss_pred ------------------------------------CeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCC
Confidence 555665 3355444556666677777777444 55445566666
Q ss_pred cCCCCEEeccCCcCcccCcccccCCC-CCCeeeCCCcc
Q 002360 788 MRSIESLDFSANQLSGQIPQSMSNLS-FLNYLNLSNNN 824 (931)
Q Consensus 788 l~~L~~LdLs~N~l~~~~p~~l~~l~-~L~~L~ls~N~ 824 (931)
+ +|+.+++++|.+....+..|.+++ .++.+.+..+.
T Consensus 345 ~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 345 T-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp S-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred C-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 6 677777777766655555566553 55566655543
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=3.7e-14 Score=137.59 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=50.0
Q ss_pred eEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCc--CccCcCCCCEEeccCCcCcccCccc----ccCCCCCCe
Q 002360 744 RSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPD--NIGVMRSIESLDFSANQLSGQIPQS----MSNLSFLNY 817 (931)
Q Consensus 744 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~--~l~~l~~L~~LdLs~N~l~~~~p~~----l~~l~~L~~ 817 (931)
+.|+|++|++++..|..+..+++|++|+|++|+++ .+|. .++.+++|+.|++++|+++ .+|.. +..+++|++
T Consensus 67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~ 144 (176)
T 1a9n_A 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV 144 (176)
T ss_dssp CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence 45555555555433333466666667777777665 4554 5666777777777777776 34443 667777777
Q ss_pred eeCCCcccc
Q 002360 818 LNLSNNNLN 826 (931)
Q Consensus 818 L~ls~N~l~ 826 (931)
||+++|...
T Consensus 145 Ld~~~n~~~ 153 (176)
T 1a9n_A 145 LDFQKVKLK 153 (176)
T ss_dssp ETTEECCHH
T ss_pred eCCCcCCHH
Confidence 777777654
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=5.5e-14 Score=136.37 Aligned_cols=135 Identities=17% Similarity=0.176 Sum_probs=103.1
Q ss_pred hccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccc
Q 002360 620 FKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAM 699 (931)
Q Consensus 620 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 699 (931)
+..+++|+.|++++|+++ .+|. +....++|++|++++|.+++. ..+..+++|+.|++++|++++..|..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 455677777777777776 4554 332334788888888888765 567888899999999999886544444555554
Q ss_pred cccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCc--cccCCCCCCEEEccCCcC
Q 002360 700 ATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPV--EVTNLQGLQSLNLSHNLF 777 (931)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~--~l~~l~~L~~L~Ls~N~l 777 (931)
+.|+|++|+++ .+|. .+..+++|+.|++++|.+
T Consensus 91 --------------------------------------------~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 91 --------------------------------------------TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp --------------------------------------------CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGG
T ss_pred --------------------------------------------CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCC
Confidence 78999999996 5665 788999999999999999
Q ss_pred cccCCcC----ccCcCCCCEEeccCCcCccc
Q 002360 778 TGRIPDN----IGVMRSIESLDFSANQLSGQ 804 (931)
Q Consensus 778 ~~~ip~~----l~~l~~L~~LdLs~N~l~~~ 804 (931)
+ .+|.. ++.+++|+.||+++|.+...
T Consensus 126 ~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 126 T-NKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp G-GSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred C-CcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 8 66764 88999999999999988643
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=1.3e-13 Score=132.63 Aligned_cols=89 Identities=20% Similarity=0.195 Sum_probs=78.7
Q ss_pred eeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCC
Q 002360 743 VRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSN 822 (931)
Q Consensus 743 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~ 822 (931)
++.|+|++|++++..|..|..+++|++|+|++|+|++..|..|..+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence 47888999999888888899999999999999999977777789999999999999999987777899999999999999
Q ss_pred ccccccCCC
Q 002360 823 NNLNGEIPS 831 (931)
Q Consensus 823 N~l~g~ip~ 831 (931)
|++++.++.
T Consensus 112 N~~~c~c~~ 120 (170)
T 3g39_A 112 NPWDCACSD 120 (170)
T ss_dssp SCBCTTBGG
T ss_pred CCCCCCchh
Confidence 999988763
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=1.4e-15 Score=150.79 Aligned_cols=133 Identities=18% Similarity=0.237 Sum_probs=81.9
Q ss_pred hhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCcccccccc
Q 002360 619 SFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSA 698 (931)
Q Consensus 619 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 698 (931)
.+..+++|++|++++|++++ +| .+. .+++|++|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLS-GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccc-cCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 55555666666666666553 55 333 4566666666666665 345445555666666666666654 22 3333333
Q ss_pred ccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCC-ccccCCCCCCEEEccCCcC
Q 002360 699 MATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIP-VEVTNLQGLQSLNLSHNLF 777 (931)
Q Consensus 699 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l 777 (931)
|+.|++++|++++..+ ..+..+++|++|++++|.+
T Consensus 117 --------------------------------------------L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 117 --------------------------------------------LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp --------------------------------------------SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred --------------------------------------------CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 3677777777764322 4677788888888888888
Q ss_pred cccCCcC----------ccCcCCCCEEeccCCcCcc
Q 002360 778 TGRIPDN----------IGVMRSIESLDFSANQLSG 803 (931)
Q Consensus 778 ~~~ip~~----------l~~l~~L~~LdLs~N~l~~ 803 (931)
++.+|.. +..+++|+.|| +|.++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 153 YNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred ccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 7766653 77788888887 666653
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=4e-13 Score=129.56 Aligned_cols=88 Identities=22% Similarity=0.225 Sum_probs=75.8
Q ss_pred eeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCC
Q 002360 743 VRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSN 822 (931)
Q Consensus 743 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~ 822 (931)
++.|+|++|++++.+|..|+.+++|++|+|++|+|++..+..|+.+++|++|||++|+|++..+..|..+++|++|++++
T Consensus 35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence 47888888888888888899999999999999999976666678999999999999999977666789999999999999
Q ss_pred ccccccCC
Q 002360 823 NNLNGEIP 830 (931)
Q Consensus 823 N~l~g~ip 830 (931)
|++.+..+
T Consensus 115 N~~~c~~~ 122 (174)
T 2r9u_A 115 NPWDCECR 122 (174)
T ss_dssp SCBCTTBG
T ss_pred CCcccccc
Confidence 99987755
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.43 E-value=4.8e-12 Score=139.21 Aligned_cols=199 Identities=12% Similarity=0.108 Sum_probs=117.2
Q ss_pred CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360 551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD 630 (931)
Q Consensus 551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 630 (931)
+++|+.+++.+|+++.+...+|. +.+|+.+.+.++ +...-..+|.++++|+.+.+..+ ++.+...+|.+ .+|+.+.
T Consensus 179 c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 179 CYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK 254 (401)
T ss_dssp CTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred cccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence 44555555555555554444444 345555555533 44344445555555555555543 33344444544 4555555
Q ss_pred cCCCcccccCchhHHhhcCcCcEEEccCcccc-----ccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCC
Q 002360 631 VGENELVGSIPTWIGERFSRLMILILRSNKFH-----GDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSS 705 (931)
Q Consensus 631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 705 (931)
+. +.++ .++...|.++++|+.+++.+|.+. ...+.+|.++++|+.++|. +.+...-..+|.+++.|
T Consensus 255 lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L------ 325 (401)
T 4fdw_A 255 LP-NGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKV------ 325 (401)
T ss_dssp EE-TTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSC------
T ss_pred eC-CCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCc------
Confidence 52 3333 444444445566666666555443 3445567777777777776 34554445566655554
Q ss_pred CCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCc
Q 002360 706 DQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI 785 (931)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l 785 (931)
+.++|..| ++..-+..|.++ +|+.+++++|.+....+..|
T Consensus 326 --------------------------------------~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F 365 (401)
T 4fdw_A 326 --------------------------------------TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVW 365 (401)
T ss_dssp --------------------------------------CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSC
T ss_pred --------------------------------------cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccc
Confidence 56667444 554556678888 89999999998886667778
Q ss_pred cCcC-CCCEEeccCCcCc
Q 002360 786 GVMR-SIESLDFSANQLS 802 (931)
Q Consensus 786 ~~l~-~L~~LdLs~N~l~ 802 (931)
..++ .++.|.+..+.+.
T Consensus 366 ~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 366 YGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CCSCTTCCEEEECGGGHH
T ss_pred cCCCCCccEEEeCHHHHH
Confidence 7774 7888888887654
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.39 E-value=1.8e-11 Score=135.56 Aligned_cols=68 Identities=9% Similarity=0.169 Sum_probs=44.1
Q ss_pred cccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCC
Q 002360 357 IFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANA 427 (931)
Q Consensus 357 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~ 427 (931)
++.+...+|.++.+|+.+.+..+ ++.....+|.++++|+.+++.++ ++ .++...|.++++|+.+.+..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccC
Confidence 34444556777777888877643 55444557777788888877654 32 55666777777777765543
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=1.5e-12 Score=125.12 Aligned_cols=109 Identities=13% Similarity=0.148 Sum_probs=82.0
Q ss_pred CcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEee
Q 002360 651 LMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMK 730 (931)
Q Consensus 651 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (931)
.+.+++++|.++. +|..+ .++|+.|+|++|++++..|..|.++++|
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L------------------------------- 56 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQL------------------------------- 56 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-------------------------------
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccC-------------------------------
Confidence 4556666666653 44444 2667777777777776666666665554
Q ss_pred cchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCc
Q 002360 731 GFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIP 806 (931)
Q Consensus 731 ~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p 806 (931)
+.|+|++|++++..+..|..+++|++|+|++|+|++..+..|+.+++|+.|+|++|++++..+
T Consensus 57 -------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 57 -------------TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp -------------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred -------------CEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 677888888876666677889999999999999997777789999999999999999986643
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.38 E-value=1.3e-11 Score=136.59 Aligned_cols=62 Identities=16% Similarity=0.174 Sum_probs=28.7
Q ss_pred CCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecC
Q 002360 569 PDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVG 632 (931)
Q Consensus 569 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 632 (931)
..+|.++.+|+.+++.++ ++..-..+|.+|++|+.+.+..+ ++.+...+|.+|++|+.+++.
T Consensus 313 ~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 313 EEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred hhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 344444455555554432 33333344555555555555443 333444445555555555554
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=3.7e-12 Score=122.68 Aligned_cols=106 Identities=12% Similarity=0.168 Sum_probs=76.9
Q ss_pred cEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeec
Q 002360 652 MILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKG 731 (931)
Q Consensus 652 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (931)
+.+++++|+++ .+|..+. ++|+.|+|++|++++..|..|.++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------------------------- 59 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNL-------------------------------- 59 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC--------------------------------
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCC--------------------------------
Confidence 45555555554 4444442 567777777777776666666655554
Q ss_pred chhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCccc
Q 002360 732 FLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQ 804 (931)
Q Consensus 732 ~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ 804 (931)
+.|+|++|+|++..+..|..+++|++|+|++|+|++..+..|+.+++|+.|+|++|++...
T Consensus 60 ------------~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 60 ------------QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp ------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ------------CEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 6777777777765555678889999999999999966666689999999999999999854
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=7.9e-14 Score=151.96 Aligned_cols=69 Identities=20% Similarity=0.237 Sum_probs=41.8
Q ss_pred eeEEEcccCccccc----CCccccCCCCCCEEEccCCcCccc----CCcCccCcCCCCEEeccCCcCcccCcccccC
Q 002360 743 VRSIDISMNNFSGE----IPVEVTNLQGLQSLNLSHNLFTGR----IPDNIGVMRSIESLDFSANQLSGQIPQSMSN 811 (931)
Q Consensus 743 L~~LdLs~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~ 811 (931)
|+.|||++|.+++. ++..+...++|++|+|++|.++.. ++..+...++|++|||++|.|+..-...+..
T Consensus 185 L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 46666666666532 344556666777777777777642 2333445567777777777776554444433
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=8.1e-13 Score=143.96 Aligned_cols=87 Identities=16% Similarity=0.255 Sum_probs=67.5
Q ss_pred ceeEEEcccCcccc----cCCccccCCCCCCEEEccCCcCccc----CCcCccCcCCCCEEeccCCcCccc----Ccccc
Q 002360 742 LVRSIDISMNNFSG----EIPVEVTNLQGLQSLNLSHNLFTGR----IPDNIGVMRSIESLDFSANQLSGQ----IPQSM 809 (931)
Q Consensus 742 ~L~~LdLs~N~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~LdLs~N~l~~~----~p~~l 809 (931)
.|+.|+|++|.++. .++..+..+++|++|+|++|.++.. ++..+...++|+.|||++|.++.. ++..+
T Consensus 156 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L 235 (372)
T 3un9_A 156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAA 235 (372)
T ss_dssp CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHH
T ss_pred ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHH
Confidence 34667777776653 3455567889999999999999853 356677788999999999999864 44556
Q ss_pred cCCCCCCeeeCCCcccccc
Q 002360 810 SNLSFLNYLNLSNNNLNGE 828 (931)
Q Consensus 810 ~~l~~L~~L~ls~N~l~g~ 828 (931)
...+.|++|||++|+++..
T Consensus 236 ~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 236 REHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHCSSCCEEECTTSSCCHH
T ss_pred HhCCCCCEEeccCCCCCHH
Confidence 6679999999999998754
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=2.7e-11 Score=131.75 Aligned_cols=132 Identities=15% Similarity=0.097 Sum_probs=82.0
Q ss_pred EEEccCc-cccccCCcccCCCCCcCEEEccC-CccccccCccccccccccccCCCCCCccccccccCCCccccceeEEee
Q 002360 653 ILILRSN-KFHGDFPIQLCRLASLQILDVAY-NSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMK 730 (931)
Q Consensus 653 ~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (931)
.++++++ .++ .+|. +..+++|+.|+|++ |++++..|..|.++++|
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L------------------------------- 58 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGEL------------------------------- 58 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCC-------------------------------
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCC-------------------------------
Confidence 4566766 666 3666 77777777777775 77776666666665554
Q ss_pred cchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCc-ccc
Q 002360 731 GFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIP-QSM 809 (931)
Q Consensus 731 ~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p-~~l 809 (931)
+.|+|++|+|++.+|..|.++++|+.|+|++|+|++..+..|..++ |+.|+|++|++...-. .+|
T Consensus 59 -------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~ 124 (347)
T 2ifg_A 59 -------------RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWL 124 (347)
T ss_dssp -------------SEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHH
T ss_pred -------------CEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHH
Confidence 6777777777777777777777777777777777755555555555 7777777777764322 122
Q ss_pred cCCCCCCeeeCCCccccccCCC
Q 002360 810 SNLSFLNYLNLSNNNLNGEIPS 831 (931)
Q Consensus 810 ~~l~~L~~L~ls~N~l~g~ip~ 831 (931)
..+.......+..+++++.-|.
T Consensus 125 ~~~~~~~~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 125 QRWEEEGLGGVPEQKLQCHGQG 146 (347)
T ss_dssp HHHHHTTCSSCGGGCCCCSSSS
T ss_pred HHHHHhCcccccccCCCCCCCh
Confidence 2222222333444555555443
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=4.9e-11 Score=129.76 Aligned_cols=103 Identities=20% Similarity=0.185 Sum_probs=73.3
Q ss_pred EEecCCC-cccccCchhHHhhcCcCcEEEccC-ccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCC
Q 002360 628 ALDVGEN-ELVGSIPTWIGERFSRLMILILRS-NKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSS 705 (931)
Q Consensus 628 ~L~L~~N-~l~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 705 (931)
.++.+++ .++ .+|. +. .+++|+.|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|.++++|
T Consensus 12 ~v~~~~~n~l~-~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L------ 82 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL------ 82 (347)
T ss_dssp CEECCSSCCCT-TTTT-SC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCC------
T ss_pred EEEcCCCCCCC-ccCC-CC-CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCC------
Confidence 4577776 676 5776 54 577777777775 77777766777777777777777777777777777666555
Q ss_pred CCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCc
Q 002360 706 DQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFT 778 (931)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 778 (931)
+.|||++|+|++..+..+..++ |+.|+|++|.+.
T Consensus 83 --------------------------------------~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 83 --------------------------------------SRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp --------------------------------------CEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred --------------------------------------CEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6777777777755555555555 777777777776
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.07 E-value=1.4e-08 Score=112.27 Aligned_cols=104 Identities=13% Similarity=0.178 Sum_probs=60.9
Q ss_pred CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360 551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD 630 (931)
Q Consensus 551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 630 (931)
+++|+.+.+. +.++.+...+|.+|.+|+.+++.++ ++.+-..+|.+|++|+.+.+..+ ++.+...+|.+|++|+.++
T Consensus 287 c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 287 CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred ccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence 4456666664 3455555667777777888877654 55455667777888888887544 5556667788888888888
Q ss_pred cCCCcccccCchhHHhhcCcCcEEEccCccc
Q 002360 631 VGENELVGSIPTWIGERFSRLMILILRSNKF 661 (931)
Q Consensus 631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l 661 (931)
+.++.... ..++ .+.+|+.+.+..+.+
T Consensus 364 ~~~~~~~~---~~~~-~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 364 YSGSRSQW---NAIS-TDSGLQNLPVAPGSI 390 (394)
T ss_dssp ESSCHHHH---HTCB-CCCCC----------
T ss_pred ECCceeeh---hhhh-ccCCCCEEEeCCCCE
Confidence 87775431 1222 466777777665544
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.07 E-value=1.1e-08 Score=113.13 Aligned_cols=109 Identities=8% Similarity=0.086 Sum_probs=55.5
Q ss_pred ccccCCCC-CCCEEeccCCcCCcCccccccCCCCCCEEEccCCc---CCCccchhhhccccccceeccCCceeEEecCCC
Q 002360 362 TNQLGQFK-RLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNK---LNGTVSEIHFVNLTKLVSFLANANSLIFKINPN 437 (931)
Q Consensus 362 ~~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 437 (931)
..+|.+++ .|+.+.+..+ ++.....+|.++.+|+.+.+..|. ++ .+....|..+.+|+.+.+..+ +.......
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhh
Confidence 34555553 4677766543 444445566777777777776553 22 455556667776666655433 33333444
Q ss_pred CCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCC
Q 002360 438 WVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDIS 474 (931)
Q Consensus 438 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls 474 (931)
|..+.+|+.+.+... +.......|..+..|+.+.+.
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred hhhhcccccccccce-eeeecccceeccccccccccc
Confidence 444445555544322 111223334444444444443
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.85 E-value=2.7e-07 Score=101.31 Aligned_cols=73 Identities=12% Similarity=0.222 Sum_probs=41.6
Q ss_pred CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCC
Q 002360 551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSI 625 (931)
Q Consensus 551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 625 (931)
+++|+.+.+.++.++.+...+|.+|.+|+.++|..+ ++.+-..+|.+|++|+.+.+..+ ++.+-..+|.+++.
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 445556666555555555566666666666666543 44344456666666666666543 44444555655543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.81 E-value=1.7e-09 Score=116.52 Aligned_cols=64 Identities=14% Similarity=0.231 Sum_probs=32.6
Q ss_pred cceeEEEcccCcccccCCcccc---CCCCCCEEEccCCcCccc----CCcCccCcCCCCEEeccCCcCccc
Q 002360 741 NLVRSIDISMNNFSGEIPVEVT---NLQGLQSLNLSHNLFTGR----IPDNIGVMRSIESLDFSANQLSGQ 804 (931)
Q Consensus 741 ~~L~~LdLs~N~l~~~ip~~l~---~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~LdLs~N~l~~~ 804 (931)
+.|+.|+|++|.+++..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++..
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 3445555555555433222221 345566666666666542 333334556666666666665543
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.75 E-value=1.1e-06 Score=96.53 Aligned_cols=95 Identities=16% Similarity=0.104 Sum_probs=73.0
Q ss_pred CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360 551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD 630 (931)
Q Consensus 551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 630 (931)
+.+|+.+.+..+ ++.+...+|.++++|+.+.+.++.++..-..+|.++++|+.+.+..+ ++.+...+|.+|++|+.+.
T Consensus 262 ~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 262 CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred eehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence 455666666543 55556678999999999999999888777889999999999999755 6667778899999999999
Q ss_pred cCCCcccccCchhHHhhcC
Q 002360 631 VGENELVGSIPTWIGERFS 649 (931)
Q Consensus 631 L~~N~l~~~~p~~~~~~l~ 649 (931)
+..+ ++ .+....|.+++
T Consensus 340 ip~~-v~-~I~~~aF~~c~ 356 (379)
T 4h09_A 340 YPKS-IT-LIESGAFEGSS 356 (379)
T ss_dssp CCTT-CC-EECTTTTTTSS
T ss_pred ECCc-cC-EEchhHhhCCC
Confidence 9765 54 56666554443
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.73 E-value=8.5e-09 Score=111.00 Aligned_cols=65 Identities=17% Similarity=0.339 Sum_probs=52.4
Q ss_pred CCCCCCEEEccCCcCcccCCcCcc---CcCCCCEEeccCCcCccc----CcccccCCCCCCeeeCCCccccc
Q 002360 763 NLQGLQSLNLSHNLFTGRIPDNIG---VMRSIESLDFSANQLSGQ----IPQSMSNLSFLNYLNLSNNNLNG 827 (931)
Q Consensus 763 ~l~~L~~L~Ls~N~l~~~ip~~l~---~l~~L~~LdLs~N~l~~~----~p~~l~~l~~L~~L~ls~N~l~g 827 (931)
.+++|++|+|++|.+++..+..+. .+++|++||||+|.+++. ++..+..++.|+.|++++|.++.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 579999999999999854443333 578999999999999875 44555678999999999998864
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=1.3e-07 Score=96.10 Aligned_cols=84 Identities=25% Similarity=0.353 Sum_probs=57.0
Q ss_pred EEcccCccc---ccCCccccCCCCCCEEEccCCcCcc--cCCcCccCcCCCCEEeccCCcCcccCcccccCCC--CCCee
Q 002360 746 IDISMNNFS---GEIPVEVTNLQGLQSLNLSHNLFTG--RIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLS--FLNYL 818 (931)
Q Consensus 746 LdLs~N~l~---~~ip~~l~~l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~--~L~~L 818 (931)
++++.|+.. +.++....+++.|++|+||+|+|++ .+|..++.+++|+.|||++|++++. ..+..+. .|+.|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 566666432 2222223567788888888888886 4556667788888888888888765 2344444 78888
Q ss_pred eCCCccccccCCC
Q 002360 819 NLSNNNLNGEIPS 831 (931)
Q Consensus 819 ~ls~N~l~g~ip~ 831 (931)
+|++|++++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 8888888877763
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.34 E-value=9.5e-08 Score=92.63 Aligned_cols=66 Identities=17% Similarity=0.236 Sum_probs=35.1
Q ss_pred ccCCCCCCEEEccCCcCccc----CCcCccCcCCCCEEec--cCCcCccc----CcccccCCCCCCeeeCCCcccc
Q 002360 761 VTNLQGLQSLNLSHNLFTGR----IPDNIGVMRSIESLDF--SANQLSGQ----IPQSMSNLSFLNYLNLSNNNLN 826 (931)
Q Consensus 761 l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~LdL--s~N~l~~~----~p~~l~~l~~L~~L~ls~N~l~ 826 (931)
+...+.|++|+|++|.|+.. +...+...++|++|+| ++|.++.. +...+...+.|++|++++|.+.
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 33345555555555555532 2344445556666666 55666543 2333444466666666666653
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=3.4e-07 Score=93.09 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=67.8
Q ss_pred hhccceeEEEcccCcccc--cCCccccCCCCCCEEEccCCcCcccCCcCccCcC--CCCEEeccCCcCcccCcc------
Q 002360 738 SILNLVRSIDISMNNFSG--EIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR--SIESLDFSANQLSGQIPQ------ 807 (931)
Q Consensus 738 ~~~~~L~~LdLs~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~--~L~~LdLs~N~l~~~~p~------ 807 (931)
..++.|+.|+||+|+|++ .+|..+..+++|+.|+|++|+|++. ..+..++ +|++|+|++|.+++.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 347789999999999998 5667888999999999999999965 3456665 999999999999987763
Q ss_pred -cccCCCCCCeee
Q 002360 808 -SMSNLSFLNYLN 819 (931)
Q Consensus 808 -~l~~l~~L~~L~ 819 (931)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 477889999988
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.25 E-value=2.6e-07 Score=89.51 Aligned_cols=112 Identities=14% Similarity=0.182 Sum_probs=55.0
Q ss_pred CCCccEEECcCC-ccccc----cCCcccCCCCCCEEecCCCcceec----CCCcccCCCCCCEEEccCCcCccc----cc
Q 002360 551 SKNIEFLKLSTN-HFSEG----IPDCWMNWPRLRTLNLGNNNFTGS----LPMSIGTLTSLRSLNLRNNRLSGV----IP 617 (931)
Q Consensus 551 ~~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p 617 (931)
.+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+... +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 445555555555 44321 222334445555555555555421 222333445566666666665532 23
Q ss_pred hhhccCCCCcEEec--CCCcccccCchhHH---hhcCcCcEEEccCcccc
Q 002360 618 TSFKNFSILEALDV--GENELVGSIPTWIG---ERFSRLMILILRSNKFH 662 (931)
Q Consensus 618 ~~~~~l~~L~~L~L--~~N~l~~~~p~~~~---~~l~~L~~L~L~~n~l~ 662 (931)
..+...++|++|+| ++|.+.......+. ...++|++|+|++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 44455566666666 55666533222121 13456666666666654
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.65 E-value=2.2e-05 Score=73.64 Aligned_cols=84 Identities=7% Similarity=0.086 Sum_probs=41.6
Q ss_pred CCCEEEccCCcCccccchhhccCCCCcEEecCCCc-ccccCchhHHh---hcCcCcEEEccCcc-ccccCCcccCCCCCc
Q 002360 601 SLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENE-LVGSIPTWIGE---RFSRLMILILRSNK-FHGDFPIQLCRLASL 675 (931)
Q Consensus 601 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~---~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L 675 (931)
.|+.|++++|.++..--..+.++++|+.|+|++|. +++.--..+.. ..++|++|+|++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 44555555555443333344455555555555553 43322222221 02356666666654 443322334556777
Q ss_pred CEEEccCCc
Q 002360 676 QILDVAYNS 684 (931)
Q Consensus 676 ~~L~Ls~N~ 684 (931)
+.|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777777765
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.49 E-value=4e-05 Score=71.86 Aligned_cols=84 Identities=12% Similarity=0.095 Sum_probs=40.3
Q ss_pred CCCEEEcCCCcccccccccccCCCCCCEEeccCCc-cccccCccccCCC----CCccEEEccCCCCCcccCCcccCCCCC
Q 002360 243 SLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNR-LQGDISSLGLDNL----TSIQKLLLSWNDELGGKIPTSFGKLCK 317 (931)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~l----~~L~~L~L~~n~~~~~~~~~~~~~l~~ 317 (931)
.|+.|+++++.++......+..+++|+.|+|++|. ++. ..-..+..+ ++|++|++++|..+++.....+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 35555555554444444444455555555555553 221 111112222 346666666665555544444555555
Q ss_pred CcEEEcCCCc
Q 002360 318 LTSFSMASTK 327 (931)
Q Consensus 318 L~~L~l~~~~ 327 (931)
|+.|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666655553
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.11 E-value=0.00018 Score=68.82 Aligned_cols=87 Identities=22% Similarity=0.164 Sum_probs=43.6
Q ss_pred ccccEEEcccC-CCccccchhhhccCCCCCCccEEECcCCccccccCC----cccCCCCCCEEecCCCcceec----CCC
Q 002360 524 LLGSIFDLSNN-ALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPD----CWMNWPRLRTLNLGNNNFTGS----LPM 594 (931)
Q Consensus 524 ~~l~~l~ls~n-~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~----~p~ 594 (931)
+.++.+++++| .+.......++..+...+.|+.|+|++|++...... .+..-+.|++|+|++|.|... +-+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 34455555553 554444444555555556666666666666543222 222335566666666665522 222
Q ss_pred cccCCCCCCEEEccCC
Q 002360 595 SIGTLTSLRSLNLRNN 610 (931)
Q Consensus 595 ~~~~l~~L~~L~L~~n 610 (931)
.+..-+.|++|+|++|
T Consensus 121 aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTTTCCCSEEECCCC
T ss_pred HHhhCCceeEEECCCC
Confidence 3344445555555543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.09 E-value=0.00077 Score=60.25 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=26.1
Q ss_pred EEEcccCccc-ccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCc
Q 002360 745 SIDISMNNFS-GEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS 802 (931)
Q Consensus 745 ~LdLs~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~ 802 (931)
.+|.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 23443221 23555555555555333344444455555555555443
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.77 E-value=0.00067 Score=64.84 Aligned_cols=90 Identities=12% Similarity=0.143 Sum_probs=42.5
Q ss_pred cCCCCCCEEEccCCcCccc----cchhhccCCCCcEEecCCCcccccCchhHHhh---cCcCcEEEccCc---ccccc--
Q 002360 597 GTLTSLRSLNLRNNRLSGV----IPTSFKNFSILEALDVGENELVGSIPTWIGER---FSRLMILILRSN---KFHGD-- 664 (931)
Q Consensus 597 ~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~---l~~L~~L~L~~n---~l~~~-- 664 (931)
..-+.|+.|+|++|.+... +.+.+..-+.|+.|+|++|.|.+..-..+.+. -+.|++|+|++| .+...
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~ 146 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE 146 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence 3344555555555555422 22233344555566666655543322222221 234666666543 22211
Q ss_pred --CCcccCCCCCcCEEEccCCccc
Q 002360 665 --FPIQLCRLASLQILDVAYNSLL 686 (931)
Q Consensus 665 --~p~~l~~l~~L~~L~Ls~N~l~ 686 (931)
+...+..-++|+.|+++.|.+.
T Consensus 147 ~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 147 MDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHhCCCcCeEeccCCCcc
Confidence 2233444567777777766553
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.65 E-value=0.0028 Score=56.53 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=51.2
Q ss_pred CEEEccCCcCc-ccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccC
Q 002360 768 QSLNLSHNLFT-GRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEI 829 (931)
Q Consensus 768 ~~L~Ls~N~l~-~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i 829 (931)
..++.+++.++ ..+|..+. ++|+.|||++|+|+...+..|..+++|++|+|++|++.+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence 47999999997 46776543 57999999999999877888999999999999999998753
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=48.50 E-value=9.6 Score=25.80 Aligned_cols=13 Identities=23% Similarity=0.143 Sum_probs=5.5
Q ss_pred HHhhhhhcccccc
Q 002360 897 CFIGPLLSNKRWR 909 (931)
Q Consensus 897 ~~~~~~~~~~~~~ 909 (931)
++++.++|.+|.+
T Consensus 27 i~~~~~~~~RRr~ 39 (44)
T 2ks1_B 27 VALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhH
Confidence 3333344544443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.86 E-value=40 Score=27.67 Aligned_cols=47 Identities=13% Similarity=0.013 Sum_probs=29.6
Q ss_pred ccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCC
Q 002360 563 HFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNN 610 (931)
Q Consensus 563 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 610 (931)
.++.+-..+|.+|.+|+.+.|-.+ ++.+-..+|.+|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344445566777777777777654 33344556777777777776653
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=34.92 E-value=91 Score=25.44 Aligned_cols=46 Identities=13% Similarity=0.032 Sum_probs=26.1
Q ss_pred CCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcCC
Q 002360 205 ELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYS 251 (931)
Q Consensus 205 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 251 (931)
.++.+...+|.++.+|+.+.+-.+ ++.+-..+|.++.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 345555556666666666666543 3334445566666666666654
No 168
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=30.56 E-value=16 Score=23.83 Aligned_cols=17 Identities=24% Similarity=0.577 Sum_probs=9.3
Q ss_pred eeehhhHHHHHHHHHhh
Q 002360 884 YVSMALGFVVGFWCFIG 900 (931)
Q Consensus 884 ~~~~~~~~~~~~~~~~~ 900 (931)
++++++|.++++.++++
T Consensus 13 IAGiVvG~v~gv~li~~ 29 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLG 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHH
Confidence 44566666665554443
No 169
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=30.29 E-value=23 Score=23.97 Aligned_cols=11 Identities=9% Similarity=-0.055 Sum_probs=4.7
Q ss_pred hhhhhcccccc
Q 002360 899 IGPLLSNKRWR 909 (931)
Q Consensus 899 ~~~~~~~~~~~ 909 (931)
.+.++|.+|.+
T Consensus 28 ~~~~~~~RRRr 38 (44)
T 2l2t_A 28 LTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHhhhhh
Confidence 33344444443
No 170
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=29.11 E-value=20 Score=22.20 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=14.0
Q ss_pred eehhhHHHHHHHHHhhhhhccccc
Q 002360 885 VSMALGFVVGFWCFIGPLLSNKRW 908 (931)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~~ 908 (931)
+.+++|.+++|.+....+.|++..
T Consensus 10 lt~i~gl~vif~~lg~tflywrgr 33 (40)
T 2l9u_A 10 LTVIAGLVVIFMMLGGTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCceeEEEccc
Confidence 345666666666655556665433
No 171
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=21.02 E-value=25 Score=23.71 Aligned_cols=24 Identities=17% Similarity=0.016 Sum_probs=9.5
Q ss_pred eehhhHHHHHHHHHhhhhhccccc
Q 002360 885 VSMALGFVVGFWCFIGPLLSNKRW 908 (931)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~~ 908 (931)
++.++|.++.+++.++.++|.+|.
T Consensus 15 a~~vVGvll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 15 ISAVVGILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhheehh
Confidence 344555332222333334444443
Done!