BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002362
(930 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 40/201 (19%)
Query: 279 LLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKSVA-SMMGSTNIISIKELTEEE 337
LL+LDDVWD P+ LK ++ +IL+TTR KSV S+MG +++ ++ E
Sbjct: 239 LLILDDVWD-------PWV--LKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGRE 289
Query: 338 CRL----LFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLMRS-------- 385
L LF + D P E I +CKG PL +IG+L+R
Sbjct: 290 KGLEILSLFVNMKKEDLPAE--------AHSIIKECKGSPLVVSLIGALLRDFPNRWAYY 341
Query: 386 --KETEEEWRRILNSGLWKVEEIEKDILSSLLLSYNDLPSKVKKCFSYCAIFPKDYNIEK 443
+ ++++RI S + E +++ ++ +S L +K ++ +I KD +
Sbjct: 342 LRQLQNKQFKRIRKSSSYDYEALDE----AMSISVEMLREDIKDYYTDLSILQKDVKVPT 397
Query: 444 DRLITLWMAQGYLDTEQDEEM 464
L LW L+TE+ E++
Sbjct: 398 KVLCVLWD----LETEEVEDI 414
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 36/187 (19%)
Query: 279 LLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKSVA-SMMGSTNIISIKELTEEE 337
LL+LDDVWD W LK + +IL+TTR KSV S+MG ++ ++ +E
Sbjct: 239 LLILDDVWDS----W-----VLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKE 289
Query: 338 CRL----LFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLMRS-------- 385
L LF + +D P EQ I +CKG PL +IG+L+R
Sbjct: 290 KGLEILSLFVNMKKADLP-------EQ-AHSIIKECKGSPLVVSLIGALLRDFPNRWEYY 341
Query: 386 --KETEEEWRRILNSGLWKVEEIEKDILSSLLLSYNDLPSKVKKCFSYCAIFPKDYNIEK 443
+ ++++RI S + E +++ ++ +S L +K ++ +I KD +
Sbjct: 342 LKQLQNKQFKRIRKSSSYDYEALDE----AMSISVEMLREDIKDYYTDLSILQKDVKVPT 397
Query: 444 DRLITLW 450
L LW
Sbjct: 398 KVLCILW 404
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 40/201 (19%)
Query: 279 LLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKSVA-SMMGSTNIISIKELTEEE 337
LL+LDDVWD P+ LK ++ +IL+TT KSV S+MG +++ ++ E
Sbjct: 246 LLILDDVWD-------PWV--LKAFDNQCQILLTTSDKSVTDSVMGPKHVVPVESGLGRE 296
Query: 338 CRL----LFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLMRS-------- 385
L LF + D P E I +CKG PL +IG+L+R
Sbjct: 297 KGLEILSLFVNMKKEDLPAE--------AHSIIKECKGSPLVVSLIGALLRDFPNRWAYY 348
Query: 386 --KETEEEWRRILNSGLWKVEEIEKDILSSLLLSYNDLPSKVKKCFSYCAIFPKDYNIEK 443
+ ++++RI S + E +++ ++ +S L +K ++ +I KD +
Sbjct: 349 LRQLQNKQFKRIRKSSSYDYEALDE----AMSISVEMLREDIKDYYTDLSILQKDVKVPT 404
Query: 444 DRLITLWMAQGYLDTEQDEEM 464
L LW L+TE+ E++
Sbjct: 405 KVLCVLWD----LETEEVEDI 421
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 40/201 (19%)
Query: 279 LLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKSVA-SMMGSTNIISIKELTEEE 337
LL+LDDVWD W LK + +IL+TTR KSV S+MG ++ ++ +E
Sbjct: 245 LLILDDVWDS----W-----VLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKE 295
Query: 338 CRL----LFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLMRS-------- 385
L LF + +D P EQ I +CKG PL +IG+L+R
Sbjct: 296 KGLEILSLFVNMKKADLP-------EQ-AHSIIKECKGSPLVVSLIGALLRDFPNRWEYY 347
Query: 386 --KETEEEWRRILNSGLWKVEEIEKDILSSLLLSYNDLPSKVKKCFSYCAIFPKDYNIEK 443
+ ++++RI S + E +++ ++ +S L +K ++ +I KD +
Sbjct: 348 LKQLQNKQFKRIRKSSSYDYEALDE----AMSISVEMLREDIKDYYTDLSILQKDVKVPT 403
Query: 444 DRLITLWMAQGYLDTEQDEEM 464
L LW ++TE+ E++
Sbjct: 404 KVLCILWD----METEEVEDI 420
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 6/90 (6%)
Query: 601 LTRIPRNI-ERLVHLRYLNLSNQSIRKLPDTLCE-LYNLQKLDISCCCKLKELPQGI-GK 657
L +P + ++L +L YLNL++ ++ LP + + L NL +LD+S +L+ LP+G+ K
Sbjct: 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS-YNQLQSLPEGVFDK 179
Query: 658 LINMRHLLNYGTISLRYMPVGI-GRLTSLR 686
L ++ L Y L+ +P G+ RLTSL+
Sbjct: 180 LTQLKDLRLYQN-QLKSVPDGVFDRLTSLQ 208
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 16/126 (12%)
Query: 567 LYLNGKILERL----FRESTSLRVLEFGDWARSLQLGPLTRIPRNI-ERLVHLRYLNLSN 621
LYL+ + +L F +L+ L G S QLG L P + + L L L+L
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLG----SNQLGAL---PVGVFDSLTQLTVLDLGT 97
Query: 622 QSIRKLPDTLCE-LYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVG-I 679
+ LP + + L +L++L CC KL ELP+GI +L ++ HL L+ +P G
Sbjct: 98 NQLTVLPSAVFDRLVHLKEL-FMCCNKLTELPRGIERLTHLTHLA-LDQNQLKSIPHGAF 155
Query: 680 GRLTSL 685
RL+SL
Sbjct: 156 DRLSSL 161
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 546 VSTCGVKRMRSLIIDYSRYFHLYLNGKILERL--FRESTSLRVLEFGDWARSLQLGPLTR 603
+S GV M S + + HL L+++ F SLR L + D + + TR
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-----TR 434
Query: 604 IPRN--IERLVHLRYLNLSNQSIRK--LPDTLCELYNLQKLDISCCCKLKEL-PQGIGKL 658
+ N L L L ++ S ++ LPD EL NL LD+S C+L++L P L
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS-QCQLEQLSPTAFNSL 493
Query: 659 INMRHLLNYGTISLRYMPVGI-GRLTSLR 686
+++ +LN + L+ +P GI RLTSL+
Sbjct: 494 SSLQ-VLNMASNQLKSVPDGIFDRLTSLQ 521
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.7 bits (86), Expect = 0.031, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 13/114 (11%)
Query: 577 LFRESTSLRVLEFGDWARSLQLGPLTRIPRNI-ERLVHLRYLNLSNQSIRKLPDTLCE-L 634
+F E TSL L G L +P + +L L YLNLS ++ LP+ + + L
Sbjct: 47 VFDELTSLTQLYLGG-------NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL 99
Query: 635 YNLQKLDISCCCKLKELPQGI-GKLINMRHLLNYGTISLRYMPVGI-GRLTSLR 686
L++L ++ +L+ LP G+ KL ++ L Y L+ +P G+ RLTSL+
Sbjct: 100 TQLKELALN-TNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQ 151
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 33/131 (25%)
Query: 590 GDWARSLQLGPLTRIPRNIERLVHLRY-----------------------LNLSNQSIRK 626
G A L+ PL + P RL HL++ L L+ +R
Sbjct: 82 GRVALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRA 141
Query: 627 LPDTLCELYNLQKLDISCCCKLKELPQGIGK---------LINMRHLLNYGTISLRYMPV 677
LP ++ L L++L I C +L ELP+ + L+N++ L T +R +P
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPA 200
Query: 678 GIGRLTSLRTL 688
I L +L++L
Sbjct: 201 SIANLQNLKSL 211
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 23/102 (22%)
Query: 611 LVHLRYLNLSNQSIRKLPDTLCELYN-----------------------LQKLDISCCCK 647
LV+L+ L L IR LP ++ L N L++LD+ C
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA 241
Query: 648 LKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLD 689
L+ P G ++ L+ +L +P+ I RLT L LD
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 4 AIVSPLLEKLISFSVKEVTQQVKLVKGLEQEVEKLTIHLQMIHAVLNDAEQ--RQVKEKS 61
A +S L+ KL +T++ KL KG+++ +E L L+ +A L + R+ +
Sbjct: 1 AAISNLIPKLGEL----LTEEFKLHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQ 56
Query: 62 VRLWLGRLKDVSYDIEDVLDEWIT 85
+LW ++++SY IEDV+D+++
Sbjct: 57 DKLWADEVRELSYVIEDVVDKFLV 80
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 17/122 (13%)
Query: 578 FRESTSLRVLE-FGDWARSLQLGPLTRIPRN-IERLVHLRYLNLSNQSIRKLPD-TLCEL 634
F SL LE F +W LT IP E L LR L L N I +P +
Sbjct: 119 FNGLASLNTLELFDNW--------LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170
Query: 635 YNLQKLDISCCCKLKELPQGIGK-LINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYV 693
+L +LD+ KL+ + +G + L N+++L N G +++ MP LT L L+E +
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYL-NLGMCNIKDMP----NLTPLVGLEELEM 225
Query: 694 SG 695
SG
Sbjct: 226 SG 227
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 29/143 (20%)
Query: 508 ISQNECLSMEISGLNAINSFD--EKVRHLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYF 565
+S+N ++EI N + + + E + L + NGA + S+
Sbjct: 95 LSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA---------------FVYLSKLK 139
Query: 566 HLYLNGKILERL----FRESTSLRVLEFGDWARSLQLGPLTRIPRN-IERLVHLRYLNLS 620
L+L +E + F SLR L+ G+ R L+ I E L +LRYLNL+
Sbjct: 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR------LSYISEGAFEGLSNLRYLNLA 193
Query: 621 NQSIRKLPDTLCELYNLQKLDIS 643
++R++P+ L L L +LD+S
Sbjct: 194 MCNLREIPN-LTPLIKLDELDLS 215
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 7/92 (7%)
Query: 601 LTRIPRNI-ERLVHLRYLNLSNQSIRKLPDTLCE-LYNLQKLDISCCCKLKELPQGI-GK 657
LT IP N+ + +L +L L +I ++P L + L NL+ ++ KL+++P+GI GK
Sbjct: 135 LTHIPANLLTDMRNLSHLEL-RANIEEMPSHLFDDLENLESIEFGSN-KLRQMPRGIFGK 192
Query: 658 LINMRHLLNYGTISLRYMPVGI-GRLTSLRTL 688
+ ++ LN + L+ +P GI RLTSL+ +
Sbjct: 193 MPKLKQ-LNLASNQLKSVPDGIFDRLTSLQKI 223
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 861 ISWIIMPRLSSLTFDSCPKLKALPDHFHQTTTLKEFNIGWNCGLLEKRYRKGEGEDWHKI 920
+SW + L+ + +CP LPD + L+ NI N G+ + + DW ++
Sbjct: 485 LSWSNLKDLTDVELYNCPNXTQLPDFLYDLPELQSLNIACNRGISAAQLKA----DWTRL 540
Query: 921 SHIPNLEIGP 930
+ + + GP
Sbjct: 541 AD--DEDTGP 548
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 604 IPRNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRH 663
I NI + L L L+ S+ +LP + L NL+ LD+S +L LP +G +++
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLS-HNRLTSLPAELGSCFQLKY 297
Query: 664 LLNYGTISLRYMPVGIGRLTSLRTL 688
+ + + +P G L +L+ L
Sbjct: 298 FYFFDNM-VTTLPWEFGNLCNLQFL 321
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 10/100 (10%)
Query: 546 VSTCGVKRMRSLIIDYSRYFHLYLNGKILERL---FRESTSLRVLEFGDWARSLQLGPLT 602
+S + + + I Y LYLNG L L + ++LRVL+ L LT
Sbjct: 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLD-------LSHNRLT 283
Query: 603 RIPRNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDI 642
+P + L+Y + + LP L NLQ L +
Sbjct: 284 SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGV 323
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 28/154 (18%)
Query: 508 ISQNECLSMEISGLNAINSFDEKVRHLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHL 567
+ N+ + + + +NS ++ L L N S P T + + LI+ R HL
Sbjct: 135 VGDNDLVYISHRAFSGLNSLEQ----LTLEKCNLTSIP--TEALSHLHGLIV--LRLRHL 186
Query: 568 YLNGKILERLFRESTSLRVLEFGDWARSLQLGP-----------------LTRIPR-NIE 609
+N I + F+ L+VLE W + P LT +P +
Sbjct: 187 NINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245
Query: 610 RLVHLRYLNLSNQSIRKLPDT-LCELYNLQKLDI 642
LV+LR+LNLS I + + L EL LQ++ +
Sbjct: 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQL 279
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,395,475
Number of Sequences: 62578
Number of extensions: 1068217
Number of successful extensions: 2286
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2261
Number of HSP's gapped (non-prelim): 42
length of query: 930
length of database: 14,973,337
effective HSP length: 108
effective length of query: 822
effective length of database: 8,214,913
effective search space: 6752658486
effective search space used: 6752658486
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)