Query 002362
Match_columns 930
No_of_seqs 560 out of 4477
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 22:19:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2E-91 4.3E-96 820.9 48.5 834 2-900 1-855 (889)
2 PLN03210 Resistant to P. syrin 100.0 9E-65 1.9E-69 631.8 48.0 669 167-907 181-908 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.8E-44 3.9E-49 386.6 14.5 278 175-459 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.9E-25 4.2E-30 280.3 16.7 277 603-901 155-462 (968)
5 PLN00113 leucine-rich repeat r 99.9 5.4E-25 1.2E-29 276.2 14.8 338 529-901 118-485 (968)
6 KOG0444 Cytoskeletal regulator 99.9 2.9E-26 6.3E-31 242.6 -6.8 326 528-901 31-372 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 1E-24 2.2E-29 231.0 -5.9 326 529-898 55-393 (1255)
8 KOG4194 Membrane glycoprotein 99.8 2.1E-22 4.5E-27 212.6 2.9 329 530-899 103-447 (873)
9 KOG4194 Membrane glycoprotein 99.8 1.4E-21 3.1E-26 206.4 4.3 332 527-901 76-426 (873)
10 PLN03210 Resistant to P. syrin 99.8 1.7E-19 3.6E-24 226.3 17.1 295 574-907 550-884 (1153)
11 KOG0472 Leucine-rich repeat pr 99.8 8.1E-22 1.7E-26 199.5 -8.8 239 532-813 71-309 (565)
12 KOG0618 Serine/threonine phosp 99.7 4.9E-19 1.1E-23 197.7 -3.7 328 544-901 13-417 (1081)
13 KOG0472 Leucine-rich repeat pr 99.7 1.7E-19 3.7E-24 182.8 -9.2 263 530-835 46-308 (565)
14 KOG0618 Serine/threonine phosp 99.6 2.2E-17 4.7E-22 184.8 -7.4 255 531-814 47-323 (1081)
15 PRK15387 E3 ubiquitin-protein 99.6 1.3E-14 2.8E-19 168.7 12.5 247 583-901 202-455 (788)
16 PRK15370 E3 ubiquitin-protein 99.5 4.2E-14 9.1E-19 165.7 8.0 243 583-902 179-426 (754)
17 KOG0617 Ras suppressor protein 99.4 3.8E-15 8.3E-20 133.9 -4.2 166 608-822 29-194 (264)
18 KOG4658 Apoptotic ATPase [Sign 99.4 5.7E-14 1.2E-18 167.1 3.9 312 548-906 519-843 (889)
19 PRK00411 cdc6 cell division co 99.4 1.2E-10 2.5E-15 130.8 30.2 317 167-498 27-374 (394)
20 PRK15370 E3 ubiquitin-protein 99.4 5.6E-13 1.2E-17 156.3 11.4 241 531-834 180-425 (754)
21 PRK15387 E3 ubiquitin-protein 99.4 4.6E-13 9.9E-18 155.9 10.5 36 613-652 283-318 (788)
22 PRK04841 transcriptional regul 99.4 2.1E-11 4.6E-16 152.8 26.1 292 170-509 14-332 (903)
23 KOG4237 Extracellular matrix p 99.3 2.4E-13 5.3E-18 138.6 -1.1 127 553-692 68-197 (498)
24 KOG0617 Ras suppressor protein 99.3 6.6E-14 1.4E-18 126.0 -5.9 101 581-689 32-133 (264)
25 TIGR02928 orc1/cdc6 family rep 99.3 3.3E-09 7.1E-14 117.8 29.6 302 168-485 13-351 (365)
26 TIGR03015 pepcterm_ATPase puta 99.2 1.5E-09 3.2E-14 115.0 21.9 183 196-383 42-242 (269)
27 PF01637 Arch_ATPase: Archaeal 99.2 1.5E-10 3.2E-15 120.1 11.8 196 172-378 1-233 (234)
28 COG2909 MalT ATP-dependent tra 99.2 3.8E-09 8.1E-14 119.5 23.0 290 179-509 24-338 (894)
29 cd00116 LRR_RI Leucine-rich re 99.1 4.4E-12 9.5E-17 138.5 -1.6 89 739-834 190-288 (319)
30 PRK00080 ruvB Holliday junctio 99.1 1.8E-09 3.9E-14 117.1 18.6 277 170-484 25-310 (328)
31 KOG4237 Extracellular matrix p 99.1 2.7E-12 5.8E-17 131.1 -3.4 94 600-694 78-175 (498)
32 TIGR00635 ruvB Holliday juncti 99.1 3.6E-09 7.7E-14 114.2 18.6 275 170-483 4-288 (305)
33 PF05729 NACHT: NACHT domain 99.1 8.8E-10 1.9E-14 107.4 12.6 143 198-346 1-163 (166)
34 cd00116 LRR_RI Leucine-rich re 99.1 2.4E-11 5.2E-16 132.7 1.4 219 606-834 75-317 (319)
35 PTZ00112 origin recognition co 98.9 1.9E-07 4.1E-12 106.8 25.0 300 169-483 754-1085(1164)
36 PRK06893 DNA replication initi 98.9 5.3E-08 1.2E-12 99.4 16.5 153 197-380 39-204 (229)
37 KOG1909 Ran GTPase-activating 98.8 4.2E-10 9.1E-15 114.0 -3.5 93 575-669 23-130 (382)
38 COG2256 MGS1 ATPase related to 98.7 9.3E-08 2E-12 99.5 11.4 171 168-374 28-207 (436)
39 KOG3207 Beta-tubulin folding c 98.7 2.3E-09 4.9E-14 111.7 -0.5 83 742-834 197-281 (505)
40 TIGR03420 DnaA_homol_Hda DnaA 98.7 3.2E-07 7E-12 94.3 15.0 170 175-381 22-203 (226)
41 COG4886 Leucine-rich repeat (L 98.7 9.8E-09 2.1E-13 115.4 4.0 107 578-693 112-219 (394)
42 KOG0532 Leucine-rich repeat (L 98.7 7.2E-10 1.6E-14 118.8 -4.9 195 551-812 74-271 (722)
43 COG3899 Predicted ATPase [Gene 98.7 8.7E-07 1.9E-11 106.9 20.6 313 172-508 2-385 (849)
44 KOG0532 Leucine-rich repeat (L 98.7 7.7E-10 1.7E-14 118.6 -4.8 182 600-834 86-270 (722)
45 PF13401 AAA_22: AAA domain; P 98.7 6.8E-08 1.5E-12 89.7 8.6 118 196-315 3-125 (131)
46 PRK13342 recombination factor 98.7 4.4E-07 9.6E-12 101.6 16.0 177 170-380 12-197 (413)
47 PF13191 AAA_16: AAA ATPase do 98.6 1.7E-07 3.7E-12 93.1 9.0 77 171-252 1-82 (185)
48 PRK14963 DNA polymerase III su 98.6 1.8E-07 4E-12 105.6 10.3 204 170-383 14-222 (504)
49 COG1474 CDC6 Cdc6-related prot 98.6 5.8E-06 1.3E-10 89.6 21.1 210 170-383 17-242 (366)
50 PRK04195 replication factor C 98.6 6.9E-06 1.5E-10 93.9 22.7 247 170-459 14-272 (482)
51 KOG1259 Nischarin, modulator o 98.6 1.9E-08 4.1E-13 99.4 1.5 105 707-834 280-384 (490)
52 PRK14961 DNA polymerase III su 98.6 2E-06 4.2E-11 94.5 17.5 190 170-376 16-217 (363)
53 PRK05564 DNA polymerase III su 98.6 1E-06 2.3E-11 94.9 15.0 179 170-378 4-189 (313)
54 KOG4341 F-box protein containi 98.5 3.6E-09 7.9E-14 109.6 -4.3 306 582-929 138-457 (483)
55 PRK14949 DNA polymerase III su 98.5 1.3E-06 2.9E-11 101.8 15.8 183 170-379 16-220 (944)
56 PRK07003 DNA polymerase III su 98.5 8E-06 1.7E-10 93.5 21.0 196 170-381 16-223 (830)
57 PRK12323 DNA polymerase III su 98.5 1.7E-06 3.7E-11 97.5 15.0 199 170-379 16-225 (700)
58 PRK08727 hypothetical protein; 98.5 4E-06 8.7E-11 85.8 16.6 149 197-376 41-201 (233)
59 cd00009 AAA The AAA+ (ATPases 98.5 8.2E-07 1.8E-11 84.4 10.9 125 173-317 1-131 (151)
60 PF05496 RuvB_N: Holliday junc 98.5 1.9E-06 4.2E-11 84.1 13.2 181 170-383 24-225 (233)
61 PRK14960 DNA polymerase III su 98.5 2.4E-06 5.2E-11 96.6 15.7 193 170-378 15-218 (702)
62 PRK14957 DNA polymerase III su 98.5 3.3E-06 7.1E-11 95.7 16.5 187 170-383 16-225 (546)
63 PRK06645 DNA polymerase III su 98.5 4E-06 8.8E-11 94.4 17.2 194 170-376 21-226 (507)
64 PRK12402 replication factor C 98.5 2.4E-06 5.2E-11 93.9 15.3 197 170-378 15-225 (337)
65 TIGR02903 spore_lon_C ATP-depe 98.5 3.6E-06 7.9E-11 98.1 17.2 172 170-347 154-367 (615)
66 COG4886 Leucine-rich repeat (L 98.4 1.1E-07 2.3E-12 107.0 4.0 187 604-819 108-295 (394)
67 PF14580 LRR_9: Leucine-rich r 98.4 1.4E-07 3E-12 90.2 4.2 129 550-695 17-152 (175)
68 PF13173 AAA_14: AAA domain 98.4 9.3E-07 2E-11 81.4 9.4 120 197-338 2-127 (128)
69 KOG1259 Nischarin, modulator o 98.4 4.2E-08 9.2E-13 97.0 0.5 202 604-835 206-410 (490)
70 cd01128 rho_factor Transcripti 98.4 3.1E-07 6.7E-12 93.8 6.2 91 196-287 15-114 (249)
71 KOG3207 Beta-tubulin folding c 98.4 1.1E-07 2.5E-12 99.3 2.8 156 529-694 121-282 (505)
72 PRK14964 DNA polymerase III su 98.4 5.9E-06 1.3E-10 92.2 16.5 181 170-376 13-214 (491)
73 PRK07994 DNA polymerase III su 98.4 4.3E-06 9.3E-11 96.2 15.2 194 170-379 16-220 (647)
74 PRK14956 DNA polymerase III su 98.4 2.7E-06 5.9E-11 93.6 13.0 194 170-376 18-219 (484)
75 PLN03025 replication factor C 98.4 6.4E-06 1.4E-10 89.0 15.5 182 170-376 13-197 (319)
76 KOG1909 Ran GTPase-activating 98.4 3.9E-08 8.4E-13 100.0 -1.6 96 546-646 24-131 (382)
77 PRK14962 DNA polymerase III su 98.4 7.6E-06 1.7E-10 91.9 16.3 201 170-397 14-240 (472)
78 PRK00440 rfc replication facto 98.4 9.2E-06 2E-10 88.5 16.4 180 170-376 17-200 (319)
79 PF14580 LRR_9: Leucine-rich r 98.4 4.6E-07 9.9E-12 86.7 5.1 124 528-668 18-149 (175)
80 KOG2028 ATPase related to the 98.4 1.8E-06 3.9E-11 88.1 9.5 158 195-374 160-331 (554)
81 PRK05896 DNA polymerase III su 98.3 8.5E-06 1.9E-10 92.3 15.5 196 170-381 16-223 (605)
82 PRK09376 rho transcription ter 98.3 1.4E-06 3E-11 92.4 8.4 103 179-287 156-267 (416)
83 PRK08084 DNA replication initi 98.3 2.5E-05 5.4E-10 80.1 17.5 152 197-379 45-209 (235)
84 PRK14958 DNA polymerase III su 98.3 8.8E-06 1.9E-10 92.5 15.2 182 170-377 16-218 (509)
85 PRK14951 DNA polymerase III su 98.3 1.2E-05 2.5E-10 92.6 16.1 196 170-378 16-224 (618)
86 PTZ00202 tuzin; Provisional 98.3 2.3E-05 4.9E-10 83.6 16.9 167 165-345 257-433 (550)
87 PRK07940 DNA polymerase III su 98.3 1.2E-05 2.5E-10 88.2 15.2 181 170-379 5-213 (394)
88 TIGR02397 dnaX_nterm DNA polym 98.3 2.2E-05 4.8E-10 86.8 17.8 183 170-380 14-219 (355)
89 PRK13341 recombination factor 98.3 6E-06 1.3E-10 97.2 13.7 169 170-374 28-212 (725)
90 PRK09112 DNA polymerase III su 98.3 1.3E-05 2.7E-10 86.7 15.1 195 169-380 22-241 (351)
91 PRK05642 DNA replication initi 98.3 2.2E-05 4.7E-10 80.4 16.1 155 197-382 45-211 (234)
92 PRK08691 DNA polymerase III su 98.3 9.9E-06 2.2E-10 92.7 14.9 182 170-378 16-219 (709)
93 KOG0989 Replication factor C, 98.3 9.1E-06 2E-10 81.8 12.5 190 169-379 35-231 (346)
94 PRK08903 DnaA regulatory inact 98.3 2.2E-05 4.8E-10 80.5 15.5 153 196-383 41-203 (227)
95 TIGR00678 holB DNA polymerase 98.3 1.7E-05 3.6E-10 78.7 14.0 91 275-375 95-187 (188)
96 PRK07471 DNA polymerase III su 98.2 3.7E-05 8E-10 83.6 17.2 196 170-379 19-238 (365)
97 PF00308 Bac_DnaA: Bacterial d 98.2 5.5E-05 1.2E-09 76.5 17.2 182 171-377 10-206 (219)
98 PRK14969 DNA polymerase III su 98.2 1.5E-05 3.3E-10 91.2 14.7 184 170-383 16-225 (527)
99 PLN03150 hypothetical protein; 98.2 1.2E-06 2.7E-11 103.1 6.0 93 583-681 419-512 (623)
100 PRK14952 DNA polymerase III su 98.2 3.1E-05 6.7E-10 88.8 16.8 199 170-384 13-225 (584)
101 PRK09087 hypothetical protein; 98.2 1.6E-05 3.5E-10 80.6 13.0 141 197-378 44-194 (226)
102 PRK14955 DNA polymerase III su 98.2 1.6E-05 3.4E-10 88.5 14.0 201 170-380 16-230 (397)
103 KOG2120 SCF ubiquitin ligase, 98.2 4.3E-08 9.3E-13 97.1 -5.9 90 737-837 255-351 (419)
104 TIGR01242 26Sp45 26S proteasom 98.2 1.4E-05 3E-10 88.2 12.6 181 167-373 119-328 (364)
105 PRK14959 DNA polymerase III su 98.2 3.3E-05 7.1E-10 88.2 15.6 198 170-383 16-225 (624)
106 PRK09111 DNA polymerase III su 98.2 3.2E-05 6.9E-10 89.3 15.6 197 170-379 24-233 (598)
107 PRK07764 DNA polymerase III su 98.2 3.7E-05 8.1E-10 91.8 16.6 198 170-383 15-226 (824)
108 KOG2227 Pre-initiation complex 98.2 6.1E-05 1.3E-09 80.3 16.1 224 168-395 148-386 (529)
109 COG5238 RNA1 Ran GTPase-activa 98.1 2.6E-07 5.6E-12 90.4 -1.9 210 578-814 26-255 (388)
110 PRK14970 DNA polymerase III su 98.1 5.3E-05 1.2E-09 83.9 16.1 183 170-381 17-212 (367)
111 TIGR00767 rho transcription te 98.1 5.1E-06 1.1E-10 88.8 7.1 91 196-287 167-266 (415)
112 PF13855 LRR_8: Leucine rich r 98.1 3.4E-06 7.3E-11 66.0 4.3 56 613-669 2-59 (61)
113 PRK14954 DNA polymerase III su 98.1 7.1E-05 1.5E-09 86.5 16.5 202 170-380 16-230 (620)
114 PRK14953 DNA polymerase III su 98.1 0.00011 2.4E-09 83.0 17.8 183 170-379 16-220 (486)
115 PRK07133 DNA polymerase III su 98.1 8.1E-05 1.8E-09 86.4 16.9 194 170-380 18-221 (725)
116 COG3903 Predicted ATPase [Gene 98.1 5E-06 1.1E-10 87.7 6.1 236 196-442 13-258 (414)
117 COG2255 RuvB Holliday junction 98.1 0.00027 6E-09 70.6 17.6 177 170-379 26-223 (332)
118 PLN03150 hypothetical protein; 98.1 5.6E-06 1.2E-10 97.5 7.0 109 553-673 419-529 (623)
119 PRK14971 DNA polymerase III su 98.1 8.8E-05 1.9E-09 86.3 16.6 180 170-376 17-219 (614)
120 KOG2120 SCF ubiquitin ligase, 98.1 1E-07 2.3E-12 94.4 -6.2 58 775-834 311-373 (419)
121 PF14516 AAA_35: AAA-like doma 98.1 0.0013 2.8E-08 71.3 24.5 203 167-386 8-246 (331)
122 KOG2982 Uncharacterized conser 98.1 2.6E-06 5.6E-11 84.8 3.3 207 578-832 67-287 (418)
123 PRK14950 DNA polymerase III su 98.0 5.2E-05 1.1E-09 88.5 14.6 194 170-378 16-220 (585)
124 PF13855 LRR_8: Leucine rich r 98.0 5E-06 1.1E-10 65.0 4.2 58 582-646 1-60 (61)
125 PRK14087 dnaA chromosomal repl 98.0 0.00012 2.5E-09 82.4 16.2 166 197-380 141-320 (450)
126 TIGR00362 DnaA chromosomal rep 98.0 0.00025 5.5E-09 79.5 19.0 158 197-376 136-307 (405)
127 PRK11331 5-methylcytosine-spec 98.0 2.2E-05 4.8E-10 85.5 9.4 119 170-300 175-297 (459)
128 CHL00181 cbbX CbbX; Provisiona 98.0 0.00029 6.3E-09 74.3 17.5 135 198-348 60-211 (287)
129 PF05621 TniB: Bacterial TniB 98.0 8.7E-05 1.9E-09 76.3 12.7 192 177-374 44-256 (302)
130 TIGR03345 VI_ClpV1 type VI sec 98.0 9.2E-05 2E-09 89.7 15.1 152 170-345 187-362 (852)
131 PRK08451 DNA polymerase III su 98.0 0.00022 4.7E-09 80.6 17.0 180 170-379 14-218 (535)
132 PRK03992 proteasome-activating 98.0 5E-05 1.1E-09 84.1 11.7 179 168-372 129-336 (389)
133 KOG4341 F-box protein containi 98.0 3.9E-07 8.4E-12 94.9 -4.5 266 612-911 138-420 (483)
134 PF05673 DUF815: Protein of un 98.0 0.0003 6.5E-09 70.0 15.6 125 167-318 24-153 (249)
135 PRK12422 chromosomal replicati 97.9 0.00029 6.3E-09 78.9 17.2 134 197-348 141-286 (445)
136 PRK06305 DNA polymerase III su 97.9 0.00018 3.9E-09 80.9 15.4 184 170-381 17-225 (451)
137 COG0593 DnaA ATPase involved i 97.9 0.0021 4.4E-08 69.7 22.5 167 196-379 112-290 (408)
138 PRK14948 DNA polymerase III su 97.9 0.0003 6.4E-09 82.0 17.4 196 170-379 16-222 (620)
139 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.6E-10 57.4 3.7 40 612-652 1-40 (44)
140 PHA02544 44 clamp loader, smal 97.9 0.00013 2.9E-09 79.1 13.7 148 170-344 21-171 (316)
141 TIGR02880 cbbX_cfxQ probable R 97.9 0.00041 8.8E-09 73.2 16.8 134 198-347 59-209 (284)
142 PRK14965 DNA polymerase III su 97.9 0.00017 3.7E-09 83.7 15.2 198 170-383 16-225 (576)
143 PRK15386 type III secretion pr 97.9 3.4E-05 7.3E-10 83.1 8.5 60 612-676 52-111 (426)
144 KOG0531 Protein phosphatase 1, 97.9 2.2E-06 4.8E-11 96.5 -0.5 102 578-690 91-193 (414)
145 PRK06647 DNA polymerase III su 97.9 0.00031 6.8E-09 80.8 16.6 192 170-377 16-218 (563)
146 PRK14086 dnaA chromosomal repl 97.9 0.0011 2.4E-08 75.6 20.6 155 198-374 315-483 (617)
147 PRK14088 dnaA chromosomal repl 97.9 0.00066 1.4E-08 76.3 18.8 159 197-376 130-302 (440)
148 TIGR02881 spore_V_K stage V sp 97.9 0.00027 5.9E-09 74.0 14.7 162 171-348 7-193 (261)
149 KOG2543 Origin recognition com 97.9 0.001 2.2E-08 69.5 18.1 167 169-345 5-192 (438)
150 KOG0531 Protein phosphatase 1, 97.9 1.9E-06 4E-11 97.0 -1.8 214 580-834 70-287 (414)
151 PRK00149 dnaA chromosomal repl 97.9 0.00056 1.2E-08 77.8 18.1 159 196-376 147-319 (450)
152 PRK05563 DNA polymerase III su 97.8 0.00067 1.4E-08 78.5 17.5 191 170-376 16-217 (559)
153 PRK07399 DNA polymerase III su 97.8 0.00066 1.4E-08 72.4 16.3 196 170-379 4-221 (314)
154 TIGR02639 ClpA ATP-dependent C 97.8 0.00022 4.8E-09 85.9 14.1 154 170-346 182-358 (731)
155 PRK06620 hypothetical protein; 97.8 0.00053 1.1E-08 69.0 14.1 134 198-376 45-186 (214)
156 PF00004 AAA: ATPase family as 97.7 0.00013 2.9E-09 67.6 8.2 97 200-316 1-112 (132)
157 CHL00095 clpC Clp protease ATP 97.7 0.00049 1.1E-08 84.0 15.1 152 170-344 179-352 (821)
158 COG0466 Lon ATP-dependent Lon 97.7 0.00046 9.9E-09 77.9 12.7 166 169-346 322-508 (782)
159 PRK05707 DNA polymerase III su 97.6 0.0011 2.4E-08 71.2 15.2 97 275-379 105-203 (328)
160 TIGR03689 pup_AAA proteasome A 97.6 0.001 2.3E-08 74.8 15.6 167 169-347 181-379 (512)
161 PRK10787 DNA-binding ATP-depen 97.6 0.0012 2.7E-08 79.1 17.1 165 170-346 322-506 (784)
162 TIGR00763 lon ATP-dependent pr 97.6 0.0016 3.4E-08 79.1 17.8 165 170-346 320-505 (775)
163 PRK08116 hypothetical protein; 97.6 0.00031 6.7E-09 73.3 10.2 104 198-316 115-221 (268)
164 PF12799 LRR_4: Leucine Rich r 97.5 8.6E-05 1.9E-09 53.0 3.4 41 582-629 1-41 (44)
165 TIGR00602 rad24 checkpoint pro 97.5 0.00045 9.8E-09 79.8 10.7 51 169-220 83-133 (637)
166 PRK11034 clpA ATP-dependent Cl 97.5 0.00086 1.9E-08 79.8 12.8 155 170-346 186-362 (758)
167 PRK15386 type III secretion pr 97.5 0.00036 7.9E-09 75.3 8.5 127 738-901 48-187 (426)
168 smart00382 AAA ATPases associa 97.4 0.00049 1.1E-08 64.5 8.5 88 198-289 3-91 (148)
169 PRK10865 protein disaggregatio 97.4 0.0012 2.6E-08 80.4 13.8 153 170-346 178-354 (857)
170 PTZ00361 26 proteosome regulat 97.4 0.00071 1.5E-08 75.0 10.8 158 170-347 183-368 (438)
171 PTZ00454 26S protease regulato 97.4 0.0025 5.3E-08 70.3 14.8 160 168-347 143-330 (398)
172 TIGR03346 chaperone_ClpB ATP-d 97.4 0.0013 2.7E-08 80.7 13.6 154 170-346 173-349 (852)
173 KOG1859 Leucine-rich repeat pr 97.4 4.2E-06 9.1E-11 92.9 -7.0 47 575-626 77-123 (1096)
174 KOG2004 Mitochondrial ATP-depe 97.4 0.0049 1.1E-07 69.5 16.5 166 169-346 410-596 (906)
175 PRK10536 hypothetical protein; 97.4 0.0025 5.4E-08 64.5 13.1 136 169-316 54-213 (262)
176 PRK08939 primosomal protein Dn 97.4 0.00096 2.1E-08 70.8 10.6 122 174-315 135-260 (306)
177 TIGR02639 ClpA ATP-dependent C 97.4 0.0016 3.4E-08 78.7 13.7 133 170-315 454-603 (731)
178 KOG4579 Leucine-rich repeat (L 97.4 8E-06 1.7E-10 71.9 -4.2 101 583-689 28-129 (177)
179 PRK08769 DNA polymerase III su 97.4 0.003 6.5E-08 67.1 14.2 96 275-380 112-209 (319)
180 PRK08058 DNA polymerase III su 97.4 0.0022 4.9E-08 69.3 13.4 163 171-345 6-181 (329)
181 COG1373 Predicted ATPase (AAA+ 97.4 0.0021 4.5E-08 71.3 13.3 118 199-342 39-163 (398)
182 PRK10865 protein disaggregatio 97.4 0.0017 3.7E-08 79.1 13.6 138 170-315 568-720 (857)
183 PRK08181 transposase; Validate 97.3 0.00056 1.2E-08 70.9 8.0 101 198-316 107-209 (269)
184 CHL00176 ftsH cell division pr 97.3 0.0019 4.1E-08 75.5 13.0 177 170-371 183-386 (638)
185 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0023 5E-08 78.4 14.2 137 170-315 565-717 (852)
186 COG3267 ExeA Type II secretory 97.3 0.012 2.6E-07 58.6 16.2 182 196-382 50-248 (269)
187 PF13177 DNA_pol3_delta2: DNA 97.3 0.0026 5.6E-08 61.0 11.6 139 174-334 1-162 (162)
188 PF01695 IstB_IS21: IstB-like 97.3 0.00028 6E-09 68.7 4.8 101 197-316 47-150 (178)
189 PRK12377 putative replication 97.3 0.00058 1.2E-08 69.8 7.0 102 197-315 101-205 (248)
190 PRK07952 DNA replication prote 97.3 0.0017 3.6E-08 66.3 10.3 103 197-315 99-204 (244)
191 KOG3665 ZYG-1-like serine/thre 97.2 0.00012 2.6E-09 86.1 2.0 129 528-670 121-261 (699)
192 TIGR02640 gas_vesic_GvpN gas v 97.2 0.0077 1.7E-07 62.9 15.4 139 199-345 23-197 (262)
193 TIGR01241 FtsH_fam ATP-depende 97.2 0.0045 9.8E-08 71.3 14.8 179 169-372 54-259 (495)
194 KOG0991 Replication factor C, 97.2 0.0038 8.3E-08 60.5 11.4 44 170-219 27-70 (333)
195 PRK06090 DNA polymerase III su 97.2 0.012 2.6E-07 62.5 16.6 93 275-379 107-201 (319)
196 PRK06871 DNA polymerase III su 97.2 0.011 2.4E-07 63.1 15.8 176 179-376 11-200 (325)
197 PRK08118 topology modulation p 97.2 0.00014 3E-09 70.1 1.4 34 199-232 3-37 (167)
198 PF02562 PhoH: PhoH-like prote 97.2 0.0011 2.3E-08 65.3 7.5 131 174-316 4-156 (205)
199 PRK06921 hypothetical protein; 97.2 0.0021 4.6E-08 66.9 10.1 100 197-316 117-225 (266)
200 PF04665 Pox_A32: Poxvirus A32 97.2 0.0007 1.5E-08 68.1 6.2 37 197-235 13-49 (241)
201 PRK09183 transposase/IS protei 97.1 0.002 4.4E-08 66.9 9.7 101 198-316 103-206 (259)
202 KOG3665 ZYG-1-like serine/thre 97.1 0.00038 8.2E-09 81.9 4.8 129 552-691 122-258 (699)
203 COG1222 RPT1 ATP-dependent 26S 97.1 0.0068 1.5E-07 63.0 13.0 191 168-384 149-372 (406)
204 PRK12608 transcription termina 97.1 0.0044 9.5E-08 66.3 11.8 102 178-286 119-230 (380)
205 PF07728 AAA_5: AAA domain (dy 97.1 0.00033 7.2E-09 65.5 2.9 89 200-301 2-90 (139)
206 TIGR03345 VI_ClpV1 type VI sec 97.1 0.0013 2.8E-08 80.0 8.3 137 170-315 566-718 (852)
207 PF10443 RNA12: RNA12 protein; 97.1 0.028 6.1E-07 60.9 17.3 203 175-390 1-289 (431)
208 PRK06526 transposase; Provisio 97.1 0.0016 3.4E-08 67.2 7.8 101 197-316 98-201 (254)
209 KOG1859 Leucine-rich repeat pr 97.0 3.5E-05 7.5E-10 85.9 -4.8 90 602-696 177-267 (1096)
210 PHA00729 NTP-binding motif con 97.0 0.0041 8.9E-08 61.9 9.8 25 196-220 16-40 (226)
211 KOG0741 AAA+-type ATPase [Post 97.0 0.017 3.7E-07 62.9 14.8 149 194-369 535-704 (744)
212 PF07693 KAP_NTPase: KAP famil 97.0 0.031 6.7E-07 60.9 17.7 165 176-345 2-262 (325)
213 PRK06835 DNA replication prote 97.0 0.0015 3.2E-08 69.9 6.9 102 198-315 184-288 (329)
214 PRK07993 DNA polymerase III su 97.0 0.016 3.4E-07 62.6 14.6 179 178-377 10-202 (334)
215 KOG2982 Uncharacterized conser 96.9 0.00043 9.3E-09 69.4 2.3 84 741-834 70-156 (418)
216 COG2607 Predicted ATPase (AAA+ 96.9 0.024 5.2E-07 55.7 14.0 109 168-303 58-167 (287)
217 PRK06964 DNA polymerase III su 96.9 0.026 5.6E-07 60.7 15.9 93 275-379 131-225 (342)
218 COG0542 clpA ATP-binding subun 96.9 0.0019 4E-08 75.3 7.5 135 170-315 491-643 (786)
219 COG1484 DnaC DNA replication p 96.9 0.0013 2.9E-08 67.8 5.7 103 196-316 104-209 (254)
220 KOG1644 U2-associated snRNP A' 96.9 0.0011 2.4E-08 63.0 4.6 80 743-835 43-124 (233)
221 PRK11034 clpA ATP-dependent Cl 96.9 0.0085 1.9E-07 71.4 13.1 133 171-314 459-606 (758)
222 PRK13531 regulatory ATPase Rav 96.9 0.0038 8.2E-08 69.1 9.3 41 171-219 21-61 (498)
223 COG0470 HolB ATPase involved i 96.9 0.0074 1.6E-07 65.8 11.8 145 171-335 2-170 (325)
224 PRK04132 replication factor C 96.9 0.017 3.6E-07 69.1 14.9 153 205-377 574-729 (846)
225 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0012 2.5E-08 70.4 4.7 51 170-220 51-101 (361)
226 COG1875 NYN ribonuclease and A 96.8 0.0047 1E-07 64.3 8.8 136 172-316 226-388 (436)
227 KOG2228 Origin recognition com 96.8 0.013 2.8E-07 60.4 11.8 172 170-346 24-219 (408)
228 TIGR02237 recomb_radB DNA repa 96.8 0.0054 1.2E-07 61.9 9.5 49 195-246 10-58 (209)
229 CHL00095 clpC Clp protease ATP 96.8 0.0039 8.5E-08 76.2 9.8 137 170-316 509-662 (821)
230 COG5238 RNA1 Ran GTPase-activa 96.8 0.00051 1.1E-08 67.9 1.7 239 607-877 25-313 (388)
231 PRK04296 thymidine kinase; Pro 96.8 0.0029 6.4E-08 62.5 7.1 113 198-317 3-117 (190)
232 PRK07261 topology modulation p 96.8 0.0023 5.1E-08 61.9 6.3 65 199-286 2-67 (171)
233 KOG1514 Origin recognition com 96.8 0.062 1.3E-06 61.0 17.7 207 170-383 396-625 (767)
234 PF00910 RNA_helicase: RNA hel 96.8 0.0034 7.3E-08 55.4 6.4 21 200-220 1-21 (107)
235 PRK09361 radB DNA repair and r 96.8 0.0054 1.2E-07 62.7 8.8 47 195-244 21-67 (225)
236 PRK11889 flhF flagellar biosyn 96.7 0.015 3.3E-07 62.5 11.8 89 196-287 240-331 (436)
237 COG2812 DnaX DNA polymerase II 96.7 0.0063 1.4E-07 68.1 9.4 189 170-374 16-215 (515)
238 TIGR01243 CDC48 AAA family ATP 96.7 0.0084 1.8E-07 72.7 11.3 180 169-373 177-381 (733)
239 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.015 3.2E-07 54.7 10.1 117 198-317 3-139 (159)
240 PRK08699 DNA polymerase III su 96.6 0.021 4.6E-07 61.3 12.5 71 275-345 112-184 (325)
241 KOG0733 Nuclear AAA ATPase (VC 96.6 0.021 4.6E-07 63.3 12.3 178 170-372 190-395 (802)
242 TIGR02902 spore_lonB ATP-depen 96.6 0.008 1.7E-07 69.4 9.8 45 170-220 65-109 (531)
243 PRK05541 adenylylsulfate kinas 96.6 0.0047 1E-07 60.4 6.8 36 196-233 6-41 (176)
244 cd01133 F1-ATPase_beta F1 ATP 96.6 0.01 2.2E-07 61.1 9.2 88 197-286 69-173 (274)
245 KOG0735 AAA+-type ATPase [Post 96.6 0.029 6.3E-07 63.4 13.1 155 196-372 430-608 (952)
246 TIGR01243 CDC48 AAA family ATP 96.5 0.023 5E-07 68.9 13.6 179 170-373 453-657 (733)
247 cd01120 RecA-like_NTPases RecA 96.5 0.013 2.8E-07 56.4 9.5 40 199-240 1-40 (165)
248 cd01394 radB RadB. The archaea 96.5 0.0095 2.1E-07 60.6 8.8 44 195-240 17-60 (218)
249 KOG1969 DNA replication checkp 96.5 0.0065 1.4E-07 68.8 7.7 88 194-301 323-412 (877)
250 COG1223 Predicted ATPase (AAA+ 96.5 0.027 5.9E-07 55.8 11.0 159 168-347 119-298 (368)
251 CHL00195 ycf46 Ycf46; Provisio 96.5 0.02 4.3E-07 64.8 11.7 159 170-348 228-407 (489)
252 PF00158 Sigma54_activat: Sigm 96.5 0.0047 1E-07 59.4 5.8 133 172-316 1-144 (168)
253 PF08423 Rad51: Rad51; InterP 96.4 0.012 2.5E-07 61.1 8.6 57 196-253 37-97 (256)
254 PF13207 AAA_17: AAA domain; P 96.4 0.0023 4.9E-08 58.2 3.0 21 199-219 1-21 (121)
255 cd01393 recA_like RecA is a b 96.4 0.015 3.3E-07 59.5 9.4 89 195-286 17-124 (226)
256 KOG1947 Leucine rich repeat pr 96.4 0.00033 7E-09 81.3 -3.5 150 736-910 289-445 (482)
257 PF14532 Sigma54_activ_2: Sigm 96.4 0.0029 6.2E-08 59.0 3.4 108 173-316 1-110 (138)
258 KOG1644 U2-associated snRNP A' 96.3 0.0049 1.1E-07 58.7 4.7 55 778-834 43-98 (233)
259 KOG4579 Leucine-rich repeat (L 96.3 0.00058 1.2E-08 60.5 -1.4 71 576-654 71-141 (177)
260 TIGR02238 recomb_DMC1 meiotic 96.3 0.014 3E-07 62.3 8.6 59 195-254 94-156 (313)
261 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.02 4.4E-07 59.0 9.6 57 195-252 17-77 (235)
262 PF00448 SRP54: SRP54-type pro 96.3 0.028 6E-07 55.6 9.9 88 197-286 1-93 (196)
263 cd00983 recA RecA is a bacter 96.3 0.009 1.9E-07 63.4 6.8 85 195-286 53-143 (325)
264 PF13604 AAA_30: AAA domain; P 96.3 0.0042 9E-08 61.7 4.1 108 197-316 18-131 (196)
265 PRK15455 PrkA family serine pr 96.3 0.0026 5.7E-08 71.1 2.9 49 171-219 77-125 (644)
266 PRK13695 putative NTPase; Prov 96.2 0.0068 1.5E-07 59.1 5.5 22 199-220 2-23 (174)
267 COG0542 clpA ATP-binding subun 96.2 0.016 3.6E-07 67.7 9.3 152 170-345 170-345 (786)
268 PRK12724 flagellar biosynthesi 96.2 0.022 4.8E-07 62.1 9.6 25 196-220 222-246 (432)
269 cd03214 ABC_Iron-Siderophores_ 96.2 0.035 7.6E-07 54.4 10.3 121 197-320 25-162 (180)
270 PF07724 AAA_2: AAA domain (Cd 96.2 0.0045 9.8E-08 59.7 3.6 40 196-237 2-42 (171)
271 PRK06696 uridine kinase; Valid 96.1 0.015 3.2E-07 59.3 7.4 43 174-219 2-44 (223)
272 PF13671 AAA_33: AAA domain; P 96.1 0.013 2.8E-07 55.0 6.4 21 199-219 1-21 (143)
273 KOG0730 AAA+-type ATPase [Post 96.1 0.044 9.5E-07 61.8 11.2 159 170-348 434-617 (693)
274 PLN03187 meiotic recombination 96.1 0.027 5.8E-07 60.6 9.3 59 195-254 124-186 (344)
275 PRK05022 anaerobic nitric oxid 96.1 0.063 1.4E-06 62.1 13.1 136 169-316 186-332 (509)
276 KOG1051 Chaperone HSP104 and r 96.1 0.027 5.8E-07 67.0 10.0 121 170-303 562-687 (898)
277 TIGR03499 FlhF flagellar biosy 96.0 0.029 6.4E-07 59.2 9.4 88 196-285 193-281 (282)
278 PLN03186 DNA repair protein RA 96.0 0.026 5.7E-07 60.7 9.0 59 195-254 121-183 (342)
279 TIGR02012 tigrfam_recA protein 96.0 0.024 5.1E-07 60.2 8.5 85 195-286 53-143 (321)
280 cd00544 CobU Adenosylcobinamid 96.0 0.017 3.7E-07 55.5 6.7 80 199-285 1-82 (169)
281 cd01131 PilT Pilus retraction 96.0 0.013 2.8E-07 58.4 6.1 109 198-320 2-113 (198)
282 PRK06067 flagellar accessory p 96.0 0.044 9.4E-07 56.4 10.1 87 195-286 23-130 (234)
283 TIGR02239 recomb_RAD51 DNA rep 96.0 0.048 1E-06 58.4 10.6 58 195-253 94-155 (316)
284 PF00560 LRR_1: Leucine Rich R 95.9 0.0035 7.7E-08 37.1 1.1 21 613-633 1-21 (22)
285 cd03228 ABCC_MRP_Like The MRP 95.9 0.034 7.4E-07 54.0 8.8 118 197-321 28-160 (171)
286 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.041 8.9E-07 51.6 9.0 106 197-321 26-132 (144)
287 cd03222 ABC_RNaseL_inhibitor T 95.9 0.037 8E-07 53.7 8.9 104 197-321 25-137 (177)
288 TIGR01650 PD_CobS cobaltochela 95.9 0.19 4.2E-06 53.2 14.7 159 171-346 46-233 (327)
289 KOG0744 AAA+-type ATPase [Post 95.9 0.073 1.6E-06 54.7 10.8 80 197-286 177-260 (423)
290 PRK09354 recA recombinase A; P 95.9 0.033 7.2E-07 59.6 8.8 85 195-286 58-148 (349)
291 PHA02244 ATPase-like protein 95.9 0.028 6.1E-07 60.1 8.2 21 199-219 121-141 (383)
292 KOG2739 Leucine-rich acidic nu 95.8 0.0041 9E-08 61.9 1.8 36 634-669 64-101 (260)
293 cd03247 ABCC_cytochrome_bd The 95.8 0.039 8.4E-07 54.0 8.6 118 197-320 28-161 (178)
294 cd03238 ABC_UvrA The excision 95.8 0.034 7.4E-07 53.9 7.9 122 197-330 21-161 (176)
295 cd03115 SRP The signal recogni 95.8 0.041 8.8E-07 53.6 8.5 21 199-219 2-22 (173)
296 cd03223 ABCD_peroxisomal_ALDP 95.8 0.066 1.4E-06 51.6 9.8 116 197-320 27-152 (166)
297 PRK11608 pspF phage shock prot 95.7 0.029 6.3E-07 60.7 8.0 134 171-316 7-151 (326)
298 TIGR00554 panK_bact pantothena 95.7 0.047 1E-06 57.3 9.2 80 195-276 60-141 (290)
299 PF00485 PRK: Phosphoribulokin 95.7 0.042 9.1E-07 54.6 8.5 79 199-280 1-87 (194)
300 COG4608 AppF ABC-type oligopep 95.7 0.057 1.2E-06 54.8 9.2 126 196-324 38-178 (268)
301 cd03216 ABC_Carb_Monos_I This 95.7 0.032 7E-07 53.6 7.2 117 197-320 26-146 (163)
302 KOG0733 Nuclear AAA ATPase (VC 95.6 0.13 2.8E-06 57.5 12.2 155 196-372 544-717 (802)
303 PRK12727 flagellar biosynthesi 95.6 0.06 1.3E-06 60.4 9.9 89 196-287 349-439 (559)
304 PRK05703 flhF flagellar biosyn 95.6 0.088 1.9E-06 58.8 11.4 89 197-287 221-310 (424)
305 PRK07132 DNA polymerase III su 95.6 0.26 5.5E-06 52.2 14.2 130 196-345 17-161 (299)
306 KOG1947 Leucine rich repeat pr 95.6 0.00077 1.7E-08 78.2 -5.2 224 634-909 187-418 (482)
307 cd02025 PanK Pantothenate kina 95.6 0.05 1.1E-06 55.1 8.5 73 199-274 1-76 (220)
308 PRK05800 cobU adenosylcobinami 95.6 0.023 5E-07 54.7 5.8 79 199-285 3-85 (170)
309 COG0468 RecA RecA/RadA recombi 95.6 0.067 1.5E-06 55.4 9.4 90 194-286 57-151 (279)
310 TIGR01817 nifA Nif-specific re 95.6 0.056 1.2E-06 63.1 10.1 135 168-316 194-341 (534)
311 PRK04301 radA DNA repair and r 95.5 0.065 1.4E-06 57.8 9.8 58 195-253 100-161 (317)
312 PRK14722 flhF flagellar biosyn 95.5 0.049 1.1E-06 59.1 8.8 88 196-287 136-226 (374)
313 COG1618 Predicted nucleotide k 95.5 0.015 3.2E-07 53.5 3.9 24 197-220 5-28 (179)
314 PRK05439 pantothenate kinase; 95.5 0.074 1.6E-06 56.2 9.8 95 178-277 69-166 (311)
315 PRK10820 DNA-binding transcrip 95.5 0.15 3.3E-06 59.0 13.3 153 170-335 204-379 (520)
316 COG1136 SalX ABC-type antimicr 95.5 0.1 2.2E-06 52.1 10.2 63 261-323 145-210 (226)
317 COG0572 Udk Uridine kinase [Nu 95.5 0.026 5.6E-07 55.6 5.9 78 195-277 6-85 (218)
318 PRK12723 flagellar biosynthesi 95.5 0.1 2.2E-06 57.2 11.2 90 196-288 173-266 (388)
319 PRK14974 cell division protein 95.5 0.17 3.6E-06 54.4 12.5 88 196-288 139-234 (336)
320 cd01124 KaiC KaiC is a circadi 95.5 0.052 1.1E-06 53.6 8.3 45 199-247 1-45 (187)
321 cd03230 ABC_DR_subfamily_A Thi 95.5 0.071 1.5E-06 51.9 9.0 119 197-321 26-160 (173)
322 PRK15429 formate hydrogenlyase 95.5 0.039 8.5E-07 66.5 8.7 135 170-316 376-521 (686)
323 TIGR00708 cobA cob(I)alamin ad 95.5 0.16 3.4E-06 48.5 10.9 116 197-316 5-140 (173)
324 KOG1532 GTPase XAB1, interacts 95.5 0.076 1.6E-06 53.1 8.9 63 194-256 16-87 (366)
325 cd01122 GP4d_helicase GP4d_hel 95.5 0.12 2.6E-06 54.5 11.5 54 196-252 29-82 (271)
326 PRK08533 flagellar accessory p 95.5 0.099 2.1E-06 53.4 10.3 49 196-248 23-71 (230)
327 PRK07667 uridine kinase; Provi 95.5 0.032 6.9E-07 55.3 6.6 37 179-219 3-39 (193)
328 PRK08233 hypothetical protein; 95.5 0.033 7.1E-07 54.8 6.7 23 197-219 3-25 (182)
329 cd03281 ABC_MSH5_euk MutS5 hom 95.4 0.034 7.4E-07 56.0 6.7 121 197-322 29-160 (213)
330 PRK10867 signal recognition pa 95.4 0.063 1.4E-06 59.7 9.3 24 196-219 99-122 (433)
331 PTZ00301 uridine kinase; Provi 95.4 0.021 4.5E-07 57.1 5.0 29 197-227 3-31 (210)
332 cd01125 repA Hexameric Replica 95.4 0.11 2.4E-06 53.5 10.7 142 199-340 3-198 (239)
333 COG1419 FlhF Flagellar GTP-bin 95.4 0.055 1.2E-06 58.2 8.3 89 196-287 202-292 (407)
334 PF08298 AAA_PrkA: PrkA AAA do 95.4 0.018 3.9E-07 60.8 4.6 51 169-219 60-110 (358)
335 PRK00771 signal recognition pa 95.4 0.1 2.2E-06 58.2 10.7 88 196-286 94-185 (437)
336 COG0464 SpoVK ATPases of the A 95.3 0.13 2.9E-06 59.4 12.2 133 195-348 274-425 (494)
337 PTZ00035 Rad51 protein; Provis 95.3 0.076 1.7E-06 57.4 9.4 58 195-253 116-177 (337)
338 COG2884 FtsE Predicted ATPase 95.3 0.11 2.3E-06 49.5 9.0 124 196-323 27-204 (223)
339 PRK09270 nucleoside triphospha 95.3 0.072 1.6E-06 54.5 8.9 25 195-219 31-55 (229)
340 PF01583 APS_kinase: Adenylyls 95.3 0.027 5.8E-07 52.8 5.1 36 197-234 2-37 (156)
341 PRK12726 flagellar biosynthesi 95.3 0.093 2E-06 56.4 9.7 91 195-287 204-296 (407)
342 cd03246 ABCC_Protease_Secretio 95.3 0.065 1.4E-06 52.1 8.1 118 198-320 29-160 (173)
343 COG1126 GlnQ ABC-type polar am 95.3 0.16 3.5E-06 49.5 10.3 125 196-323 27-203 (240)
344 KOG0731 AAA+-type ATPase conta 95.3 0.2 4.3E-06 58.6 12.9 181 170-375 311-520 (774)
345 TIGR00959 ffh signal recogniti 95.3 0.12 2.5E-06 57.6 10.9 25 196-220 98-122 (428)
346 KOG2123 Uncharacterized conser 95.3 0.0012 2.7E-08 65.6 -4.0 82 608-691 37-125 (388)
347 PRK10733 hflB ATP-dependent me 95.3 0.093 2E-06 62.3 10.7 130 198-347 186-336 (644)
348 TIGR02974 phageshock_pspF psp 95.3 0.056 1.2E-06 58.4 8.1 44 172-219 1-44 (329)
349 KOG0739 AAA+-type ATPase [Post 95.2 0.32 7E-06 49.4 12.5 97 170-287 133-236 (439)
350 PLN00020 ribulose bisphosphate 95.2 0.064 1.4E-06 57.0 8.0 27 194-220 145-171 (413)
351 TIGR02236 recomb_radA DNA repa 95.2 0.088 1.9E-06 56.8 9.3 58 195-253 93-154 (310)
352 COG4618 ArpD ABC-type protease 95.1 0.17 3.6E-06 55.6 11.0 22 198-219 363-384 (580)
353 KOG2739 Leucine-rich acidic nu 95.1 0.01 2.2E-07 59.2 1.8 60 776-835 64-127 (260)
354 TIGR03877 thermo_KaiC_1 KaiC d 95.1 0.14 3.1E-06 52.7 10.2 50 195-248 19-68 (237)
355 PRK00889 adenylylsulfate kinas 95.1 0.071 1.5E-06 52.0 7.6 25 196-220 3-27 (175)
356 TIGR03878 thermo_KaiC_2 KaiC d 95.1 0.093 2E-06 54.7 8.8 41 195-237 34-74 (259)
357 PF00154 RecA: recA bacterial 95.0 0.058 1.3E-06 57.1 7.2 84 196-286 52-141 (322)
358 PF13238 AAA_18: AAA domain; P 95.0 0.016 3.5E-07 53.2 2.7 21 200-220 1-21 (129)
359 PF08433 KTI12: Chromatin asso 95.0 0.084 1.8E-06 55.0 8.2 23 198-220 2-24 (270)
360 cd02027 APSK Adenosine 5'-phos 95.0 0.077 1.7E-06 50.1 7.2 21 199-219 1-21 (149)
361 PF03215 Rad17: Rad17 cell cyc 95.0 0.094 2E-06 59.9 9.2 59 171-234 20-78 (519)
362 cd00267 ABC_ATPase ABC (ATP-bi 95.0 0.06 1.3E-06 51.4 6.6 117 198-322 26-146 (157)
363 PF00006 ATP-synt_ab: ATP synt 95.0 0.077 1.7E-06 53.1 7.4 84 198-285 16-114 (215)
364 cd03282 ABC_MSH4_euk MutS4 hom 94.9 0.088 1.9E-06 52.5 7.9 119 197-324 29-159 (204)
365 cd03215 ABC_Carb_Monos_II This 94.9 0.15 3.2E-06 50.1 9.3 24 197-220 26-49 (182)
366 TIGR00064 ftsY signal recognit 94.9 0.17 3.7E-06 52.9 10.2 39 196-236 71-109 (272)
367 cd01121 Sms Sms (bacterial rad 94.8 0.12 2.5E-06 56.6 9.1 41 196-238 81-121 (372)
368 cd03229 ABC_Class3 This class 94.8 0.055 1.2E-06 52.9 6.0 121 197-320 26-165 (178)
369 TIGR00390 hslU ATP-dependent p 94.8 0.058 1.2E-06 58.7 6.5 50 170-219 12-69 (441)
370 PRK05480 uridine/cytidine kina 94.8 0.022 4.9E-07 57.4 3.3 25 195-219 4-28 (209)
371 TIGR00235 udk uridine kinase. 94.8 0.023 5E-07 57.2 3.4 25 195-219 4-28 (207)
372 PRK06547 hypothetical protein; 94.8 0.035 7.7E-07 53.6 4.4 25 195-219 13-37 (172)
373 cd02019 NK Nucleoside/nucleoti 94.8 0.02 4.2E-07 45.8 2.2 21 199-219 1-21 (69)
374 PRK05986 cob(I)alamin adenolsy 94.7 0.22 4.8E-06 48.3 9.7 119 196-316 21-158 (191)
375 PF12775 AAA_7: P-loop contain 94.7 0.027 5.8E-07 58.9 3.7 96 179-294 22-118 (272)
376 PRK06002 fliI flagellum-specif 94.7 0.07 1.5E-06 59.0 6.8 87 197-286 165-264 (450)
377 COG0563 Adk Adenylate kinase a 94.6 0.041 8.8E-07 53.4 4.5 22 199-220 2-23 (178)
378 cd02028 UMPK_like Uridine mono 94.6 0.061 1.3E-06 52.5 5.6 21 199-219 1-21 (179)
379 cd03217 ABC_FeS_Assembly ABC-t 94.6 0.17 3.7E-06 50.6 9.0 119 197-320 26-168 (200)
380 PRK10923 glnG nitrogen regulat 94.6 0.24 5.2E-06 57.0 11.6 47 170-220 138-184 (469)
381 KOG0729 26S proteasome regulat 94.6 0.18 4E-06 50.1 8.7 98 168-286 175-280 (435)
382 KOG2035 Replication factor C, 94.5 0.17 3.6E-06 51.0 8.4 180 172-374 15-223 (351)
383 PRK14721 flhF flagellar biosyn 94.5 0.2 4.3E-06 55.4 10.0 88 196-285 190-278 (420)
384 PTZ00088 adenylate kinase 1; P 94.5 0.035 7.5E-07 56.3 3.9 20 200-219 9-28 (229)
385 KOG0734 AAA+-type ATPase conta 94.5 0.09 2E-06 57.6 7.0 50 171-220 305-360 (752)
386 PF07726 AAA_3: ATPase family 94.5 0.028 6.1E-07 50.2 2.7 27 200-228 2-28 (131)
387 PRK04328 hypothetical protein; 94.5 0.14 3.1E-06 53.0 8.4 41 196-238 22-62 (249)
388 KOG0728 26S proteasome regulat 94.5 0.46 1E-05 46.9 11.1 155 171-346 147-331 (404)
389 PF06745 KaiC: KaiC; InterPro 94.5 0.12 2.6E-06 52.8 7.9 43 196-239 18-60 (226)
390 COG1121 ZnuC ABC-type Mn/Zn tr 94.5 0.2 4.3E-06 50.9 9.0 22 198-219 31-52 (254)
391 PF12061 DUF3542: Protein of u 94.5 0.064 1.4E-06 54.5 5.4 77 4-84 296-373 (402)
392 TIGR02858 spore_III_AA stage I 94.4 0.13 2.9E-06 53.5 8.0 129 178-320 97-233 (270)
393 PRK06762 hypothetical protein; 94.4 0.029 6.2E-07 54.3 2.9 23 197-219 2-24 (166)
394 cd03369 ABCC_NFT1 Domain 2 of 94.4 0.42 9.1E-06 48.0 11.5 23 197-219 34-56 (207)
395 COG0396 sufC Cysteine desulfur 94.3 0.31 6.8E-06 48.0 9.6 65 264-328 150-216 (251)
396 COG0467 RAD55 RecA-superfamily 94.3 0.096 2.1E-06 54.8 6.8 51 195-249 21-71 (260)
397 COG4088 Predicted nucleotide k 94.3 0.17 3.7E-06 48.6 7.5 23 198-220 2-24 (261)
398 KOG0743 AAA+-type ATPase [Post 94.3 0.79 1.7E-05 50.0 13.4 154 197-386 235-417 (457)
399 cd03244 ABCC_MRP_domain2 Domai 94.2 0.33 7.2E-06 49.4 10.5 23 197-219 30-52 (221)
400 PRK12597 F0F1 ATP synthase sub 94.2 0.11 2.3E-06 58.0 7.2 89 197-286 143-247 (461)
401 TIGR03881 KaiC_arch_4 KaiC dom 94.2 0.2 4.4E-06 51.3 8.9 41 196-238 19-59 (229)
402 cd01135 V_A-ATPase_B V/A-type 94.2 0.16 3.4E-06 52.4 7.8 90 197-286 69-176 (276)
403 KOG2123 Uncharacterized conser 94.2 0.0052 1.1E-07 61.3 -2.8 100 550-665 17-123 (388)
404 PRK14723 flhF flagellar biosyn 94.2 0.22 4.7E-06 59.0 9.8 87 197-286 185-273 (767)
405 cd03213 ABCG_EPDR ABCG transpo 94.2 0.25 5.5E-06 49.0 9.2 118 197-317 35-172 (194)
406 cd03240 ABC_Rad50 The catalyti 94.2 0.24 5.2E-06 49.6 9.0 61 268-330 131-195 (204)
407 PRK03839 putative kinase; Prov 94.2 0.032 6.9E-07 54.7 2.7 21 199-219 2-22 (180)
408 cd03245 ABCC_bacteriocin_expor 94.1 0.35 7.7E-06 49.1 10.4 23 197-219 30-52 (220)
409 PRK06995 flhF flagellar biosyn 94.1 0.23 4.9E-06 55.9 9.5 88 197-286 256-344 (484)
410 PRK12678 transcription termina 94.1 0.093 2E-06 59.0 6.2 96 181-286 405-513 (672)
411 PRK03846 adenylylsulfate kinas 94.1 0.15 3.2E-06 50.9 7.3 25 195-219 22-46 (198)
412 PF05659 RPW8: Arabidopsis bro 94.1 0.52 1.1E-05 43.8 10.2 78 3-84 8-86 (147)
413 COG5635 Predicted NTPase (NACH 94.1 0.066 1.4E-06 65.7 5.7 183 196-384 221-427 (824)
414 cd03232 ABC_PDR_domain2 The pl 94.1 0.3 6.5E-06 48.4 9.4 23 197-219 33-55 (192)
415 smart00534 MUTSac ATPase domai 94.1 0.069 1.5E-06 52.6 4.8 119 199-323 1-129 (185)
416 KOG0738 AAA+-type ATPase [Post 94.1 0.39 8.5E-06 50.8 10.3 50 171-220 213-268 (491)
417 cd03233 ABC_PDR_domain1 The pl 94.1 0.36 7.8E-06 48.3 10.1 24 197-220 33-56 (202)
418 PRK09280 F0F1 ATP synthase sub 94.0 0.24 5.2E-06 55.1 9.4 89 197-286 144-248 (463)
419 COG1428 Deoxynucleoside kinase 94.0 0.029 6.2E-07 54.5 1.9 23 197-219 4-26 (216)
420 TIGR00150 HI0065_YjeE ATPase, 94.0 0.063 1.4E-06 48.9 4.1 40 177-220 6-45 (133)
421 cd03283 ABC_MutS-like MutS-lik 94.0 0.3 6.5E-06 48.5 9.3 23 198-220 26-48 (199)
422 PRK05973 replicative DNA helic 94.0 0.32 7E-06 49.3 9.5 49 196-248 63-111 (237)
423 TIGR03574 selen_PSTK L-seryl-t 94.0 0.23 5E-06 51.6 8.8 22 199-220 1-22 (249)
424 PRK00625 shikimate kinase; Pro 93.9 0.036 7.9E-07 53.5 2.5 21 199-219 2-22 (173)
425 TIGR01360 aden_kin_iso1 adenyl 93.9 0.042 9.2E-07 54.3 3.1 24 196-219 2-25 (188)
426 PF13481 AAA_25: AAA domain; P 93.9 0.29 6.4E-06 48.5 9.2 42 198-239 33-82 (193)
427 PRK06731 flhF flagellar biosyn 93.9 0.4 8.6E-06 49.9 10.2 89 197-288 75-166 (270)
428 PRK04040 adenylate kinase; Pro 93.9 0.044 9.5E-07 53.9 3.0 22 198-219 3-24 (188)
429 PRK05201 hslU ATP-dependent pr 93.9 0.11 2.4E-06 56.6 6.3 50 170-219 15-72 (443)
430 PRK09519 recA DNA recombinatio 93.9 0.21 4.4E-06 59.3 8.9 85 195-286 58-148 (790)
431 COG2274 SunT ABC-type bacterio 93.8 0.38 8.3E-06 57.2 11.2 57 263-319 614-672 (709)
432 PRK10875 recD exonuclease V su 93.8 0.3 6.6E-06 57.1 10.1 115 197-316 167-302 (615)
433 COG1066 Sms Predicted ATP-depe 93.8 0.17 3.7E-06 54.1 7.3 83 196-287 92-179 (456)
434 PF03205 MobB: Molybdopterin g 93.8 0.1 2.3E-06 48.4 5.2 39 198-237 1-39 (140)
435 TIGR03740 galliderm_ABC gallid 93.8 0.5 1.1E-05 48.1 10.7 24 197-220 26-49 (223)
436 cd03251 ABCC_MsbA MsbA is an e 93.8 0.59 1.3E-05 48.0 11.4 23 197-219 28-50 (234)
437 PRK05917 DNA polymerase III su 93.8 1.1 2.3E-05 47.0 13.0 59 275-333 94-154 (290)
438 PRK15453 phosphoribulokinase; 93.8 0.35 7.5E-06 50.0 9.2 77 196-275 4-89 (290)
439 cd03253 ABCC_ATM1_transporter 93.7 0.42 9.1E-06 49.2 10.2 63 266-330 145-208 (236)
440 cd01132 F1_ATPase_alpha F1 ATP 93.7 0.12 2.6E-06 53.2 6.0 87 197-287 69-172 (274)
441 COG3640 CooC CO dehydrogenase 93.7 0.11 2.5E-06 51.1 5.3 43 199-242 2-44 (255)
442 PF13479 AAA_24: AAA domain 93.7 0.23 5E-06 50.1 7.9 32 197-238 3-34 (213)
443 TIGR03575 selen_PSTK_euk L-ser 93.7 0.2 4.4E-06 53.7 7.8 21 200-220 2-22 (340)
444 TIGR03498 FliI_clade3 flagella 93.6 0.22 4.8E-06 55.1 8.2 87 197-286 140-240 (418)
445 TIGR01069 mutS2 MutS2 family p 93.6 0.1 2.2E-06 62.9 6.0 25 196-220 321-345 (771)
446 COG2842 Uncharacterized ATPase 93.6 1.5 3.2E-05 45.3 13.2 96 198-301 95-190 (297)
447 PF00560 LRR_1: Leucine Rich R 93.6 0.034 7.5E-07 32.8 1.0 21 636-657 1-21 (22)
448 PF06309 Torsin: Torsin; Inte 93.6 0.11 2.3E-06 46.4 4.5 50 171-220 26-76 (127)
449 COG0003 ArsA Predicted ATPase 93.5 0.12 2.7E-06 54.8 5.8 49 197-247 2-50 (322)
450 cd01136 ATPase_flagellum-secre 93.5 0.19 4.1E-06 53.6 7.2 86 197-286 69-169 (326)
451 PRK15115 response regulator Gl 93.5 0.53 1.1E-05 53.8 11.5 133 171-316 135-279 (444)
452 TIGR02655 circ_KaiC circadian 93.4 0.34 7.4E-06 55.6 9.6 49 195-247 261-309 (484)
453 PRK08149 ATP synthase SpaL; Va 93.4 0.21 4.6E-06 55.2 7.5 87 196-286 150-251 (428)
454 TIGR01359 UMP_CMP_kin_fam UMP- 93.4 0.045 9.7E-07 53.9 2.2 21 199-219 1-21 (183)
455 PF13245 AAA_19: Part of AAA d 93.4 0.17 3.6E-06 41.2 5.0 23 197-219 10-33 (76)
456 PRK09580 sufC cysteine desulfu 93.4 0.49 1.1E-05 49.1 10.1 24 197-220 27-50 (248)
457 cd02023 UMPK Uridine monophosp 93.4 0.046 9.9E-07 54.6 2.2 21 199-219 1-21 (198)
458 cd02029 PRK_like Phosphoribulo 93.4 0.21 4.6E-06 51.0 6.8 77 199-277 1-85 (277)
459 cd02024 NRK1 Nicotinamide ribo 93.4 0.046 1E-06 53.3 2.1 21 199-219 1-21 (187)
460 PTZ00185 ATPase alpha subunit; 93.3 0.29 6.3E-06 54.5 8.3 90 197-286 189-299 (574)
461 TIGR03305 alt_F1F0_F1_bet alte 93.3 0.2 4.4E-06 55.6 7.2 89 197-286 138-242 (449)
462 PRK00131 aroK shikimate kinase 93.3 0.057 1.2E-06 52.6 2.8 23 197-219 4-26 (175)
463 COG1102 Cmk Cytidylate kinase 93.3 0.053 1.2E-06 50.0 2.3 43 199-254 2-44 (179)
464 TIGR02322 phosphon_PhnN phosph 93.3 0.057 1.2E-06 52.9 2.8 22 198-219 2-23 (179)
465 PRK07276 DNA polymerase III su 93.3 2.3 4.9E-05 44.7 14.6 70 274-344 102-173 (290)
466 PRK07594 type III secretion sy 93.3 0.33 7.1E-06 53.8 8.8 87 196-286 154-255 (433)
467 PF01078 Mg_chelatase: Magnesi 93.3 0.11 2.4E-06 51.0 4.5 42 170-219 3-44 (206)
468 COG2019 AdkA Archaeal adenylat 93.3 0.073 1.6E-06 49.3 3.1 24 196-219 3-26 (189)
469 TIGR01425 SRP54_euk signal rec 93.3 0.44 9.5E-06 52.8 9.7 24 196-219 99-122 (429)
470 TIGR00041 DTMP_kinase thymidyl 93.3 0.36 7.9E-06 47.9 8.5 23 198-220 4-26 (195)
471 cd03243 ABC_MutS_homologs The 93.2 0.13 2.9E-06 51.4 5.3 23 198-220 30-52 (202)
472 PRK11388 DNA-binding transcrip 93.2 0.17 3.7E-06 60.6 7.1 131 170-315 325-466 (638)
473 cd02021 GntK Gluconate kinase 93.2 0.053 1.2E-06 51.3 2.3 21 199-219 1-21 (150)
474 PRK08972 fliI flagellum-specif 93.2 0.24 5.2E-06 54.7 7.5 86 197-286 162-262 (444)
475 PRK06793 fliI flagellum-specif 93.2 0.19 4.1E-06 55.6 6.8 122 196-321 155-291 (432)
476 PRK08927 fliI flagellum-specif 93.2 0.21 4.6E-06 55.3 7.1 87 196-286 157-258 (442)
477 TIGR01420 pilT_fam pilus retra 93.2 0.17 3.6E-06 55.2 6.4 113 197-320 122-234 (343)
478 PRK11823 DNA repair protein Ra 93.2 0.36 7.9E-06 54.5 9.2 41 196-238 79-119 (446)
479 PLN02348 phosphoribulokinase 93.1 0.4 8.6E-06 52.0 8.9 25 195-219 47-71 (395)
480 PF00142 Fer4_NifH: 4Fe-4S iro 93.1 0.18 3.8E-06 51.2 5.8 41 198-240 1-41 (273)
481 PRK13765 ATP-dependent proteas 93.1 0.12 2.6E-06 60.4 5.4 74 170-253 31-104 (637)
482 PTZ00494 tuzin-like protein; P 93.1 2.6 5.5E-05 46.0 14.5 165 167-345 368-543 (664)
483 PRK10751 molybdopterin-guanine 93.1 0.088 1.9E-06 50.4 3.6 25 196-220 5-29 (173)
484 COG0541 Ffh Signal recognition 93.1 11 0.00024 41.2 19.4 55 196-253 99-155 (451)
485 cd03250 ABCC_MRP_domain1 Domai 93.1 0.78 1.7E-05 45.9 10.7 24 197-220 31-54 (204)
486 PRK06217 hypothetical protein; 93.0 0.06 1.3E-06 52.9 2.5 22 199-220 3-24 (183)
487 KOG2170 ATPase of the AAA+ sup 93.0 0.34 7.3E-06 49.6 7.6 115 171-301 83-203 (344)
488 PRK05922 type III secretion sy 93.0 0.27 5.8E-06 54.4 7.6 86 197-286 157-257 (434)
489 TIGR03263 guanyl_kin guanylate 93.0 0.069 1.5E-06 52.4 2.8 22 198-219 2-23 (180)
490 cd00227 CPT Chloramphenicol (C 93.0 0.065 1.4E-06 52.2 2.6 22 198-219 3-24 (175)
491 PF02374 ArsA_ATPase: Anion-tr 93.0 0.16 3.4E-06 54.2 5.6 46 198-245 2-47 (305)
492 PF03308 ArgK: ArgK protein; 93.0 0.19 4.2E-06 50.7 5.8 39 178-220 14-52 (266)
493 cd00984 DnaB_C DnaB helicase C 93.0 0.68 1.5E-05 47.8 10.3 54 196-252 12-65 (242)
494 PRK10416 signal recognition pa 93.0 0.4 8.6E-06 51.4 8.6 25 196-220 113-137 (318)
495 KOG0727 26S proteasome regulat 92.9 0.16 3.6E-06 50.0 5.1 52 169-220 154-212 (408)
496 COG0714 MoxR-like ATPases [Gen 92.9 0.2 4.3E-06 54.5 6.5 113 171-301 25-137 (329)
497 PF13504 LRR_7: Leucine rich r 92.9 0.067 1.4E-06 29.3 1.4 16 613-628 2-17 (17)
498 PLN02796 D-glycerate 3-kinase 92.9 0.77 1.7E-05 49.1 10.5 25 195-219 98-122 (347)
499 PRK13949 shikimate kinase; Pro 92.8 0.069 1.5E-06 51.6 2.5 21 199-219 3-23 (169)
500 PF10236 DAP3: Mitochondrial r 92.8 0.55 1.2E-05 50.3 9.5 49 327-376 258-306 (309)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2e-91 Score=820.92 Aligned_cols=834 Identities=26% Similarity=0.379 Sum_probs=616.0
Q ss_pred hhhHHHHHHHHHhcchhHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHhhHHhhhhhHH
Q 002362 2 VDAIVSPLLEKLISFSVKEVTQQVKLVKGLEQEVEKLTIHLQMIHAVLNDAEQRQVKEKSVRLWLGRLKDVSYDIEDVLD 81 (930)
Q Consensus 2 a~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~l~~~~yd~ed~ld 81 (930)
|++.++..++++.+ .+.+++....+.++.+..|++.|..++++++|++.++.....+..|.+.+++++|++||.++
T Consensus 1 ~~~~~s~~~~~~~~----~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~ 76 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQ----LLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIW 76 (889)
T ss_pred CCeEEEEehhhHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777877 78888999999999999999999999999999999988888999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCcccccCCCCCcCcccccchhHHHHHHHHHHHHHHHHHhhccccceeccCCCCC--cCCCC
Q 002362 82 EWITARRKLQMKQNGHCPQEQVCSCSPTSSIGFEKIILRPDIAVKIKEINEKLDAIATQKYIFKFVENGSNST--RERPG 159 (930)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~--~~~~~ 159 (930)
.|..+....+....-.. .....+.. |+. .++++.+..+..+.+++..+.+....+.......... .....
T Consensus 77 ~~~v~~~~~~~~~~l~~-~~~~~~~~-----c~~--~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~ 148 (889)
T KOG4658|consen 77 LFLVEEIERKANDLLST-RSVERQRL-----CLC--GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPRE 148 (889)
T ss_pred HHHHHHHHHHHhHHhhh-hHHHHHHH-----hhh--hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchh
Confidence 99988765433221000 00001111 111 3445566666666666666666555554332111111 11122
Q ss_pred CCCcCCcccCCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHH-HHhcCCeEEEEEeCCC
Q 002362 160 RAQSTSLIDEEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEE-VKRKFDKILWVCVSET 238 (930)
Q Consensus 160 ~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~ 238 (930)
.+++.+..++.. ||.+..++++.+.|..+ +..+++|+||||+||||||+.++|+.. ++.+||.++||+||+.
T Consensus 149 ~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d------~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~ 221 (889)
T KOG4658|consen 149 KVETRPIQSESD-VGLETMLEKLWNRLMED------DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKE 221 (889)
T ss_pred hcccCCCCcccc-ccHHHHHHHHHHHhccC------CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEccc
Confidence 344445555555 99999999999999864 338999999999999999999999977 9999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCC--ccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCCh
Q 002362 239 FEEFRVAKAIVEALDGHESRL--GEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKK 316 (930)
Q Consensus 239 ~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 316 (930)
++...++++|++.++...... ...++++..+.+.|++|||+|||||||+. .+|+.+..++|...+||||++|||++
T Consensus 222 f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~ 299 (889)
T KOG4658|consen 222 FTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSE 299 (889)
T ss_pred ccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccH
Confidence 999999999999987643332 33478999999999999999999999996 47999999999999999999999999
Q ss_pred HHHhh-hCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHhhhcCCCCHHHHHHH
Q 002362 317 SVASM-MGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLMRSKETEEEWRRI 395 (930)
Q Consensus 317 ~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~ 395 (930)
+|+.. |++...++++.|+++|||+||.+.||.... ...+.++++|++|+++|+|+|||++++|+.|+.+.+..+|+++
T Consensus 300 ~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~ 378 (889)
T KOG4658|consen 300 EVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRA 378 (889)
T ss_pred hhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99998 888899999999999999999999987643 3344589999999999999999999999999999999999999
Q ss_pred Hhccccc----chhhhhhHHHHHHHhhhcCChhHHHHHhHhcCCCCCcccChHHHHHHHHHhCCcCCC-cchhHHHHHHH
Q 002362 396 LNSGLWK----VEEIEKDILSSLLLSYNDLPSKVKKCFSYCAIFPKDYNIEKDRLITLWMAQGYLDTE-QDEEMESKGEE 470 (930)
Q Consensus 396 l~~~~~~----~~~~~~~i~~~l~lsy~~L~~~~k~cf~~~s~fp~~~~i~~~~Li~~w~a~g~i~~~-~~~~~e~~~~~ 470 (930)
.+...+. .++.++.++++|++||+.||.++|.||+|||+||+||.|+++.||.+|+||||+++. .+.++++.|+.
T Consensus 379 ~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~ 458 (889)
T KOG4658|consen 379 LNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYD 458 (889)
T ss_pred HccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHH
Confidence 9865443 344567899999999999999999999999999999999999999999999999984 46889999999
Q ss_pred HHHHHHHccCCcccccCCCCceeeEEecHHHHHHHHHhhh-----ccceeeecc-CCcc--ccccCcceeEEEEEecCCc
Q 002362 471 YFGILASRSFFQEFTKSYDNCIMQCKMHDMVHDFGQFISQ-----NECLSMEIS-GLNA--INSFDEKVRHLLLIVGNGA 542 (930)
Q Consensus 471 ~~~~L~~~~l~~~~~~~~~~~~~~~~mh~lv~~~a~~~s~-----~e~~~~~~~-~~~~--~~~~~~~~r~l~l~~~~~~ 542 (930)
|+.+|++++|++..... ++..+|+|||++||+|.++++ +++.+.... +... ....+..+|++++..+...
T Consensus 459 ~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~ 536 (889)
T KOG4658|consen 459 YIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIE 536 (889)
T ss_pred HHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchh
Confidence 99999999999986654 566789999999999999999 666555543 2221 1224578899999999876
Q ss_pred cccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCC
Q 002362 543 SFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQ 622 (930)
Q Consensus 543 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~ 622 (930)
.++. ...+++|+||.+.++.. ........+|..++.||||||++|. .+.++|+.|++|.|||||+|++|
T Consensus 537 ~~~~-~~~~~~L~tLll~~n~~----~l~~is~~ff~~m~~LrVLDLs~~~------~l~~LP~~I~~Li~LryL~L~~t 605 (889)
T KOG4658|consen 537 HIAG-SSENPKLRTLLLQRNSD----WLLEISGEFFRSLPLLRVLDLSGNS------SLSKLPSSIGELVHLRYLDLSDT 605 (889)
T ss_pred hccC-CCCCCccceEEEeecch----hhhhcCHHHHhhCcceEEEECCCCC------ccCcCChHHhhhhhhhcccccCC
Confidence 5333 34566899999998852 1233356679999999999999754 67899999999999999999999
Q ss_pred cccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCC
Q 002362 623 SIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGR 702 (930)
Q Consensus 623 ~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~ 702 (930)
.|+.||..+.+|..|++||+..+..+..+|..+..|.+||+|.+.... .......++.+.+|++|..+.+....
T Consensus 606 ~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s----- 679 (889)
T KOG4658|consen 606 GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISS----- 679 (889)
T ss_pred CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecch-----
Confidence 999999999999999999999998777777777889999999997653 11112223444444444433332221
Q ss_pred cccccccccCCCcCCeeeeecc-cCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcce
Q 002362 703 KACRLESLRSLELLQVCGIRRL-GNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRK 781 (930)
Q Consensus 703 ~~~~l~~L~~L~~L~~~~~~~~-~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 781 (930)
...+..+..+..|..+..... +. .......+.+..+.+|+.|.+..+............ ......++++..
T Consensus 680 -~~~~e~l~~~~~L~~~~~~l~~~~--~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~-----~~~~~~f~~l~~ 751 (889)
T KOG4658|consen 680 -VLLLEDLLGMTRLRSLLQSLSIEG--CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEES-----LIVLLCFPNLSK 751 (889)
T ss_pred -hHhHhhhhhhHHHHHHhHhhhhcc--cccceeecccccccCcceEEEEcCCCchhhcccccc-----cchhhhHHHHHH
Confidence 101112222222211000000 00 111222335677889999999887764310000000 000002445666
Q ss_pred EEEeeccCCCCCCcccccccCccEEEeeCCCCCCCC-CCCCCCCCcceeeeccCcCceEeCCccccCcccccCcccccee
Q 002362 782 LLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKL-PPLGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLT 860 (930)
Q Consensus 782 L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l-~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~ 860 (930)
+.+.++.... .+.|....++|+.|.+..|...+.+ |....+..++.+.+..+. ..... .+. ....||++..+.
T Consensus 752 ~~~~~~~~~r-~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~-~~~l~-~~~---~l~~l~~i~~~~ 825 (889)
T KOG4658|consen 752 VSILNCHMLR-DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNK-LEGLR-MLC---SLGGLPQLYWLP 825 (889)
T ss_pred HHhhcccccc-ccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccc-cccce-eee---cCCCCceeEecc
Confidence 6666666555 6778778899999999998876654 445555556654443221 11000 011 112566666666
Q ss_pred eccccccccceeeeccCCccCCCCCCCCCCCCccEEEEec
Q 002362 861 ISWIIMPRLSSLTFDSCPKLKALPDHFHQTTTLKEFNIGW 900 (930)
Q Consensus 861 l~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~ 900 (930)
+. +++|+.+.+..||++..+| .+.++.+.+
T Consensus 826 l~---~~~l~~~~ve~~p~l~~~P-------~~~~~~i~~ 855 (889)
T KOG4658|consen 826 LS---FLKLEELIVEECPKLGKLP-------LLSTLTIVG 855 (889)
T ss_pred cC---ccchhheehhcCcccccCc-------cccccceec
Confidence 64 5668888888888877776 344555666
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=9e-65 Score=631.81 Aligned_cols=669 Identities=22% Similarity=0.296 Sum_probs=471.8
Q ss_pred ccCCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEe---CCC-----
Q 002362 167 IDEEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCV---SET----- 238 (930)
Q Consensus 167 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~----- 238 (930)
.+.+.+||++..++++..+|... .++.++|+|+||||+||||||+.+|+ ++..+|+..+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~ 254 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYS 254 (1153)
T ss_pred cccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcc
Confidence 34567999999999999988543 34689999999999999999999999 68889999888742 111
Q ss_pred ------cc-HHHHHHHHHHHhcCCC-CCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEE
Q 002362 239 ------FE-EFRVAKAIVEALDGHE-SRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKIL 310 (930)
Q Consensus 239 ------~~-~~~~~~~i~~~l~~~~-~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 310 (930)
+. ...++.+++.++.... ..... ...+++.++++|+||||||||+. ..|+.+.......++||+||
T Consensus 255 ~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 255 SANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEE
Confidence 01 1234445555543321 11111 14567788999999999999874 46777776555567899999
Q ss_pred EEcCChHHHhhhCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHhhhcCCCCHH
Q 002362 311 VTTRKKSVASMMGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLMRSKETEE 390 (930)
Q Consensus 311 vTtr~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~ 390 (930)
||||++.++..++..++|+++.|++++||+||+++||+... .++++.+++++|+++|+|+|||++++|++|+++ +.+
T Consensus 329 iTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~ 405 (1153)
T PLN03210 329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKE 405 (1153)
T ss_pred EEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHH
Confidence 99999999988888889999999999999999999997653 245688999999999999999999999999976 689
Q ss_pred HHHHHHhcccccchhhhhhHHHHHHHhhhcCCh-hHHHHHhHhcCCCCCcccChHHHHHHHHHhCCcCCCcchhHHHHHH
Q 002362 391 EWRRILNSGLWKVEEIEKDILSSLLLSYNDLPS-KVKKCFSYCAIFPKDYNIEKDRLITLWMAQGYLDTEQDEEMESKGE 469 (930)
Q Consensus 391 ~w~~~l~~~~~~~~~~~~~i~~~l~lsy~~L~~-~~k~cf~~~s~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~e~~~~ 469 (930)
+|+.++...... .+..|..+|++||++|+. ..|.||+++|+||.++.++ .+..|++.+.+...
T Consensus 406 ~W~~~l~~L~~~---~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~~---------- 469 (1153)
T PLN03210 406 DWMDMLPRLRNG---LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDVN---------- 469 (1153)
T ss_pred HHHHHHHHHHhC---ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCch----------
Confidence 999999875432 235699999999999987 5999999999999887553 47788888765422
Q ss_pred HHHHHHHHccCCcccccCCCCceeeEEecHHHHHHHHHhhhccc-------eeeeccCCc---cccccCcceeEEEEEec
Q 002362 470 EYFGILASRSFFQEFTKSYDNCIMQCKMHDMVHDFGQFISQNEC-------LSMEISGLN---AINSFDEKVRHLLLIVG 539 (930)
Q Consensus 470 ~~~~~L~~~~l~~~~~~~~~~~~~~~~mh~lv~~~a~~~s~~e~-------~~~~~~~~~---~~~~~~~~~r~l~l~~~ 539 (930)
.-++.|+++||++... + .++|||++|++|+.+++++. +........ ........++++++...
T Consensus 470 ~~l~~L~~ksLi~~~~----~---~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~ 542 (1153)
T PLN03210 470 IGLKNLVDKSLIHVRE----D---IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDID 542 (1153)
T ss_pred hChHHHHhcCCEEEcC----C---eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccC
Confidence 2388999999997632 2 48999999999999987663 111110000 01123456788887766
Q ss_pred CCccc---cccccCCCCccEEEEccccccccchhhhHHHHHhhcC-CcceEEEcCCcccccCCCCCcccCcccccCCCCC
Q 002362 540 NGASF---PVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRES-TSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLR 615 (930)
Q Consensus 540 ~~~~~---~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~-~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr 615 (930)
....+ ...+..+++|+.|.+..+...........++.-|..+ ..||.|++.+ . .+..+|..+ .+.+|+
T Consensus 543 ~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~---~----~l~~lP~~f-~~~~L~ 614 (1153)
T PLN03210 543 EIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDK---Y----PLRCMPSNF-RPENLV 614 (1153)
T ss_pred ccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecC---C----CCCCCCCcC-CccCCc
Confidence 55432 3457789999999886553110000000111223333 3578888773 3 456666665 356777
Q ss_pred eeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCC
Q 002362 616 YLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSG 695 (930)
Q Consensus 616 ~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~ 695 (930)
+|+++++.+..+|..+..+++|++|++++|..+..+|. +..+++|+.|++.+|..+..+|..++++++|+.|++..+..
T Consensus 615 ~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 615 KLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN 693 (1153)
T ss_pred EEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC
Confidence 77777777777777777777777777777666666664 66677777777777766677777777777777777655433
Q ss_pred CCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCC--------------
Q 002362 696 GGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRR-------------- 761 (930)
Q Consensus 696 ~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~-------------- 761 (930)
...+ +..+ .+++|+.|.+.++..+..++. ...+|+.|+++.|.+.......
T Consensus 694 L~~L----p~~i-~l~sL~~L~Lsgc~~L~~~p~----------~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~ 758 (1153)
T PLN03210 694 LEIL----PTGI-NLKSLYRLNLSGCSRLKSFPD----------ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMK 758 (1153)
T ss_pred cCcc----CCcC-CCCCCCEEeCCCCCCcccccc----------ccCCcCeeecCCCccccccccccccccccccccccc
Confidence 3221 2222 455555555555444333322 1134444444444332110000
Q ss_pred ---C-ccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCCCCCCCCcceeeeccCcCc
Q 002362 762 ---K-NEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPPLGKLPSLEKLSISFMCSV 837 (930)
Q Consensus 762 ---~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l 837 (930)
. .............+++|+.|++++|.....+|.+++++++|+.|+|++|...+.+|....+++|+.|+|++|..+
T Consensus 759 ~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 759 SEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRL 838 (1153)
T ss_pred hhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcc
Confidence 0 000000001122357899999999987777999999999999999999998888988668999999999999876
Q ss_pred eEeCCccccCcccccCccccceeeccc----------cccccceeeeccCCccCCCCCCCCCCCCccEEEEecCchhhHH
Q 002362 838 KRVDNEILGIEITIAFPKLKSLTISWI----------IMPRLSSLTFDSCPKLKALPDHFHQTTTLKEFNIGWNCGLLEK 907 (930)
Q Consensus 838 ~~~~~~~~~~~~~~~f~~L~~L~l~~~----------~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~nc~~l~~ 907 (930)
+.++. ..++|+.|.++++ .+++|+.|++.+|++++.+|..+..+++|+.+++++ |+.|..
T Consensus 839 ~~~p~---------~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~-C~~L~~ 908 (1153)
T PLN03210 839 RTFPD---------ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD-CGALTE 908 (1153)
T ss_pred ccccc---------cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCC-Cccccc
Confidence 54432 3467888888877 478999999999999999999899999999999999 988864
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.8e-44 Score=386.63 Aligned_cols=278 Identities=37% Similarity=0.631 Sum_probs=226.0
Q ss_pred chhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcC
Q 002362 175 RVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDG 254 (930)
Q Consensus 175 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 254 (930)
|+.++++|.+.|.... .+.++|+|+||||+||||||+.++++..++.+|+.++||.++...+...++..|+++++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998643 378999999999999999999999987799999999999999999999999999999987
Q ss_pred CCC---CCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChHHHhhhCC-cceEeC
Q 002362 255 HES---RLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKSVASMMGS-TNIISI 330 (930)
Q Consensus 255 ~~~---~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~-~~~~~l 330 (930)
... ...+.++....+.+.++++++||||||||+.. .|+.+...++....|++||||||+..++..++. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccc--cccccccccccccccccccccccccccccccccccccccc
Confidence 643 45677889999999999999999999999854 788888888877789999999999999887765 779999
Q ss_pred CCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHhhhcCCCCHHHHHHHHhcccccch---hhh
Q 002362 331 KELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLMRSKETEEEWRRILNSGLWKVE---EIE 407 (930)
Q Consensus 331 ~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~---~~~ 407 (930)
++|+++||++||.+.++... ....+.+++++++|+++|+|+|||++++|++|+.+.+..+|..+++...+... +..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999997655 12234456679999999999999999999999766567889998866443332 235
Q ss_pred hhHHHHHHHhhhcCChhHHHHHhHhcCCCCCcccChHHHHHHHHHhCCcCCC
Q 002362 408 KDILSSLLLSYNDLPSKVKKCFSYCAIFPKDYNIEKDRLITLWMAQGYLDTE 459 (930)
Q Consensus 408 ~~i~~~l~lsy~~L~~~~k~cf~~~s~fp~~~~i~~~~Li~~w~a~g~i~~~ 459 (930)
..+..++.+||+.||+++|.||+|||+||+++.|+++.|+++|++||||+..
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 6799999999999999999999999999999999999999999999999865
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=1.9e-25 Score=280.25 Aligned_cols=277 Identities=21% Similarity=0.258 Sum_probs=184.6
Q ss_pred ccCcccccCCCCCeeeccCCccc-ccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCC
Q 002362 603 RIPRNIERLVHLRYLNLSNQSIR-KLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGR 681 (930)
Q Consensus 603 ~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~ 681 (930)
.+|..++++.+|++|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..+++
T Consensus 155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 46667777777777777777754 66777777777777777777766667777777777777777777655567777777
Q ss_pred CCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCC
Q 002362 682 LTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRR 761 (930)
Q Consensus 682 l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~ 761 (930)
+++|++|++..+.... ..+..+..+++|+.|.+.++...+..+. .+..+++|+.|++++|.+.+.
T Consensus 235 l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~-------~l~~l~~L~~L~Ls~n~l~~~---- 299 (968)
T PLN00113 235 LTSLNHLDLVYNNLTG----PIPSSLGNLKNLQYLFLYQNKLSGPIPP-------SIFSLQKLISLDLSDNSLSGE---- 299 (968)
T ss_pred CCCCCEEECcCceecc----ccChhHhCCCCCCEEECcCCeeeccCch-------hHhhccCcCEEECcCCeeccC----
Confidence 7777777766544322 2355566777777777666655444443 455667788888877766543
Q ss_pred CccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCC-CCCCCCcceeeeccCcCceEe
Q 002362 762 KNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP-LGKLPSLEKLSISFMCSVKRV 840 (930)
Q Consensus 762 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~ 840 (930)
++..+..+++|+.|++++|.+.+.+|.++..+++|+.|+|++|.+.+.+|. ++.+++|+.|++++|.-...+
T Consensus 300 -------~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~ 372 (968)
T PLN00113 300 -------IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372 (968)
T ss_pred -------CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC
Confidence 445566777888888888877766777788888888888888877766665 777888888888766432222
Q ss_pred CCcccc----------------Cc--ccccCccccceeeccc-----------cccccceeeeccCCccCCCCCCCCCCC
Q 002362 841 DNEILG----------------IE--ITIAFPKLKSLTISWI-----------IMPRLSSLTFDSCPKLKALPDHFHQTT 891 (930)
Q Consensus 841 ~~~~~~----------------~~--~~~~f~~L~~L~l~~~-----------~lp~L~~L~l~~c~~L~~lp~~l~~l~ 891 (930)
+..+.. .. ....+++|+.|.+.+| .+++|+.|++++|.....+|..+..++
T Consensus 373 p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 452 (968)
T PLN00113 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP 452 (968)
T ss_pred ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCC
Confidence 222111 00 0014566666666665 356677777777654445555556677
Q ss_pred CccEEEEecC
Q 002362 892 TLKEFNIGWN 901 (930)
Q Consensus 892 ~L~~L~l~~n 901 (930)
+|+.|++++|
T Consensus 453 ~L~~L~L~~n 462 (968)
T PLN00113 453 SLQMLSLARN 462 (968)
T ss_pred CCcEEECcCc
Confidence 7777777773
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=5.4e-25 Score=276.23 Aligned_cols=338 Identities=22% Similarity=0.253 Sum_probs=200.9
Q ss_pred cceeEEEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCccc
Q 002362 529 EKVRHLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNI 608 (930)
Q Consensus 529 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i 608 (930)
..+|++.+..+..... .....+++|++|++++|... ...+..+.++++|++|+|++|... ..+|..+
T Consensus 118 ~~L~~L~Ls~n~l~~~-~p~~~l~~L~~L~Ls~n~~~------~~~p~~~~~l~~L~~L~L~~n~l~------~~~p~~~ 184 (968)
T PLN00113 118 SSLRYLNLSNNNFTGS-IPRGSIPNLETLDLSNNMLS------GEIPNDIGSFSSLKVLDLGGNVLV------GKIPNSL 184 (968)
T ss_pred CCCCEEECcCCccccc-cCccccCCCCEEECcCCccc------ccCChHHhcCCCCCEEECccCccc------ccCChhh
Confidence 3455555555544321 11234556666666655421 112333566667777777654322 3456666
Q ss_pred ccCCCCCeeeccCCccc-ccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCc
Q 002362 609 ERLVHLRYLNLSNQSIR-KLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRT 687 (930)
Q Consensus 609 ~~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 687 (930)
+++++|++|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++
T Consensus 185 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 264 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264 (968)
T ss_pred hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCE
Confidence 66777777777766654 45666666777777777666655566666666677777776666544556666666666666
Q ss_pred CCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChh-----------------hhhhccccCCCCCCeeEEE
Q 002362 688 LDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVG-----------------EAKRLELDKMKNLSCLKLL 750 (930)
Q Consensus 688 L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~-----------------~~~~~~l~~~~~L~~L~L~ 750 (930)
|++..+.... ..+..+..+++|+.|++.++...+..+..- ......+..+++|+.|+++
T Consensus 265 L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 340 (968)
T PLN00113 265 LFLYQNKLSG----PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340 (968)
T ss_pred EECcCCeeec----cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECc
Confidence 6655433221 223444555555555555444433332200 0000023344444555554
Q ss_pred eeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCC-CCCCCCccee
Q 002362 751 FNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP-LGKLPSLEKL 829 (930)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L 829 (930)
+|.+.+. ++..+..+++|+.|++++|.+.+.+|.++..+++|+.|++++|.+.+.+|. ++.+++|+.|
T Consensus 341 ~n~l~~~-----------~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L 409 (968)
T PLN00113 341 SNKFSGE-----------IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409 (968)
T ss_pred CCCCcCc-----------CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE
Confidence 4444321 344455566677777777666655666666667777777777766666555 7778888888
Q ss_pred eeccCcCceEeCCccccCcccccCccccceeeccc-----------cccccceeeeccCCccCCCCCCCCCCCCccEEEE
Q 002362 830 SISFMCSVKRVDNEILGIEITIAFPKLKSLTISWI-----------IMPRLSSLTFDSCPKLKALPDHFHQTTTLKEFNI 898 (930)
Q Consensus 830 ~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~-----------~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l 898 (930)
++++|.....++..+ ..+++|+.|++++| .+|+|+.|++++|.....+|..+ ..++|+.|++
T Consensus 410 ~L~~n~l~~~~p~~~------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~l 482 (968)
T PLN00113 410 RLQDNSFSGELPSEF------TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDL 482 (968)
T ss_pred ECcCCEeeeECChhH------hcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEEC
Confidence 887665322222222 26789999999887 57899999999997777788654 4689999999
Q ss_pred ecC
Q 002362 899 GWN 901 (930)
Q Consensus 899 ~~n 901 (930)
++|
T Consensus 483 s~n 485 (968)
T PLN00113 483 SRN 485 (968)
T ss_pred cCC
Confidence 985
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=2.9e-26 Score=242.62 Aligned_cols=326 Identities=23% Similarity=0.235 Sum_probs=242.9
Q ss_pred CcceeEEEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcc
Q 002362 528 DEKVRHLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRN 607 (930)
Q Consensus 528 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~ 607 (930)
...++.|.+.......+|..+..+.+|..|.+..|.... +..-++.++.||.+++..|.. .-..+|..
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~-------vhGELs~Lp~LRsv~~R~N~L-----KnsGiP~d 98 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLIS-------VHGELSDLPRLRSVIVRDNNL-----KNSGIPTD 98 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHh-------hhhhhccchhhHHHhhhcccc-----ccCCCCch
Confidence 345677777777777778888888888888888775321 112267788889888887643 23457888
Q ss_pred cccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccc-cccCCcceEeecCcccccccCCcCCCCCCCC
Q 002362 608 IERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGI-GKLINMRHLLNYGTISLRYMPVGIGRLTSLR 686 (930)
Q Consensus 608 i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i-~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 686 (930)
|..|..|+.||||+|++.+.|..+...+++-+|+|++|+ +.++|..+ .+|+.|-+|++++| .+..+|+.+..|.+||
T Consensus 99 iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred hcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhh
Confidence 889999999999999999999988889999999999887 88888764 68888889999888 6788899999999999
Q ss_pred cCCceEeCCCCCcCCCcccccccccCCCcCCeeeee----cccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCC
Q 002362 687 TLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIR----RLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRK 762 (930)
Q Consensus 687 ~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~----~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~ 762 (930)
+|.++++... ...+..|++++.|..++.+ .+.++|. ++..+.+|..++++.|++..
T Consensus 177 tL~Ls~NPL~-------hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-------sld~l~NL~dvDlS~N~Lp~------ 236 (1255)
T KOG0444|consen 177 TLKLSNNPLN-------HFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-------SLDDLHNLRDVDLSENNLPI------ 236 (1255)
T ss_pred hhhcCCChhh-------HHHHhcCccchhhhhhhcccccchhhcCCC-------chhhhhhhhhccccccCCCc------
Confidence 9987766543 3345555555555544333 2345555 67778889999999888765
Q ss_pred ccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCCCCCCCCcceeeeccCcCceEeCC
Q 002362 763 NEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPPLGKLPSLEKLSISFMCSVKRVDN 842 (930)
Q Consensus 763 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~ 842 (930)
+++.+...++|+.|+|++|.+++ +.-..+...+|+.|+|+.|.++.....+..|+.|+.|.+.++. +
T Consensus 237 ------vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk-L----- 303 (1255)
T KOG0444|consen 237 ------VPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK-L----- 303 (1255)
T ss_pred ------chHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc-c-----
Confidence 67778888899999999998887 6666667788899999988665433348888888888887543 1
Q ss_pred ccccCccc-ccCccccceeeccc----------cccccceeeeccCCccCCCCCCCCCCCCccEEEEecC
Q 002362 843 EILGIEIT-IAFPKLKSLTISWI----------IMPRLSSLTFDSCPKLKALPDHFHQTTTLKEFNIGWN 901 (930)
Q Consensus 843 ~~~~~~~~-~~f~~L~~L~l~~~----------~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~n 901 (930)
.+.|++.. ..+.+|+.+...+| .++.|+.|.++.| .|..+|+++.-++.|+.|++.+|
T Consensus 304 ~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 304 TFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred cccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCC
Confidence 12222111 13455666665555 5788999999766 78889999999999999999996
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=1e-24 Score=230.98 Aligned_cols=326 Identities=24% Similarity=0.249 Sum_probs=257.1
Q ss_pred cceeEEEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCccc
Q 002362 529 EKVRHLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNI 608 (930)
Q Consensus 529 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i 608 (930)
.++.||++..+...++...+..++.||++++..|..... .++++ +..+.-|.+|||++| .+.+.|..+
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKns----GiP~d-iF~l~dLt~lDLShN-------qL~EvP~~L 122 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNS----GIPTD-IFRLKDLTILDLSHN-------QLREVPTNL 122 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccC----CCCch-hcccccceeeecchh-------hhhhcchhh
Confidence 467889998888877777888999999999998875332 33555 556899999999954 678899999
Q ss_pred ccCCCCCeeeccCCccccccccc-ccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCc
Q 002362 609 ERLVHLRYLNLSNQSIRKLPDTL-CELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRT 687 (930)
Q Consensus 609 ~~L~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 687 (930)
..-+++-.|+||+|+|..+|.++ -+|..|-+|||++|. +..+|+.+..|.+|+.|.+++|+....--..+..|++|++
T Consensus 123 E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~v 201 (1255)
T KOG0444|consen 123 EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSV 201 (1255)
T ss_pred hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhh
Confidence 99999999999999999999875 589999999999998 9999999999999999999999654322234456778888
Q ss_pred CCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchH
Q 002362 688 LDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQ 767 (930)
Q Consensus 688 L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 767 (930)
|.+++.... ...++.++..+.+|..++++.+.. ..+|. .+-++.+|+.|+|+.|.++..
T Consensus 202 Lhms~TqRT---l~N~Ptsld~l~NL~dvDlS~N~L-p~vPe-------cly~l~~LrrLNLS~N~iteL---------- 260 (1255)
T KOG0444|consen 202 LHMSNTQRT---LDNIPTSLDDLHNLRDVDLSENNL-PIVPE-------CLYKLRNLRRLNLSGNKITEL---------- 260 (1255)
T ss_pred hhcccccch---hhcCCCchhhhhhhhhccccccCC-CcchH-------HHhhhhhhheeccCcCceeee----------
Confidence 877654332 234577888899999888887754 33444 577889999999999988752
Q ss_pred HHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCC-CCCCC-CCCCCCcceeeeccCcCceEeCCccc
Q 002362 768 LLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENC-EKLPP-LGKLPSLEKLSISFMCSVKRVDNEIL 845 (930)
Q Consensus 768 ~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~-~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~ 845 (930)
--......+|++|+++.|.++. +|+.++.++.|+.|.+.+|.+. +-+|. +|.|..|+.+...++ .++-++..+.
T Consensus 261 --~~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglc 336 (1255)
T KOG0444|consen 261 --NMTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLC 336 (1255)
T ss_pred --eccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhh
Confidence 1122334689999999999988 9999999999999999999764 34565 999999999999854 4555565544
Q ss_pred cCcccccCccccceeeccc----------cccccceeeeccCCccCCCCCCCCCCCCccEEEE
Q 002362 846 GIEITIAFPKLKSLTISWI----------IMPRLSSLTFDSCPKLKALPDHFHQTTTLKEFNI 898 (930)
Q Consensus 846 ~~~~~~~f~~L~~L~l~~~----------~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l 898 (930)
.|++|+.|.++.| -+|.|+.|+++.||+|..-|.--..-++|..-+|
T Consensus 337 ------RC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 337 ------RCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred ------hhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence 6899999999988 5889999999999999876643333345554444
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=2.1e-22 Score=212.64 Aligned_cols=329 Identities=18% Similarity=0.165 Sum_probs=207.6
Q ss_pred ceeEEEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCc-cc
Q 002362 530 KVRHLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPR-NI 608 (930)
Q Consensus 530 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i 608 (930)
+++.+.+..+....+|.-.....+|..|+|..|.+.+. -...+..++.||+|||+.|. +..+|. ++
T Consensus 103 nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv------~se~L~~l~alrslDLSrN~-------is~i~~~sf 169 (873)
T KOG4194|consen 103 NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSV------TSEELSALPALRSLDLSRNL-------ISEIPKPSF 169 (873)
T ss_pred cceeeeeccchhhhcccccccccceeEEeeeccccccc------cHHHHHhHhhhhhhhhhhch-------hhcccCCCC
Confidence 34444554444444444444445566666666543322 23345667778888888543 334432 34
Q ss_pred ccCCCCCeeeccCCcccccc-cccccCCcccEEeccCCCCCcccccc-ccccCCcceEeecCccccccc-CCcCCCCCCC
Q 002362 609 ERLVHLRYLNLSNQSIRKLP-DTLCELYNLQKLDISCCCKLKELPQG-IGKLINMRHLLNYGTISLRYM-PVGIGRLTSL 685 (930)
Q Consensus 609 ~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~-p~~i~~l~~L 685 (930)
..=.++++|+|++|.|+.+- ..|.+|.+|-+|.|+.|+ +..+|.. |.+|++|+.|+|..| .+..+ -..|..|.+|
T Consensus 170 p~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl 247 (873)
T KOG4194|consen 170 PAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSL 247 (873)
T ss_pred CCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhh
Confidence 44467888888888888774 357778888888888887 6677654 455888888888777 33332 2346677788
Q ss_pred CcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccc
Q 002362 686 RTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNED 765 (930)
Q Consensus 686 ~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~ 765 (930)
|.|.+-.+.... .....+-.|.+++.|++..+........ .+.++..|+.|+|++|.+...
T Consensus 248 ~nlklqrN~I~k----L~DG~Fy~l~kme~l~L~~N~l~~vn~g-------~lfgLt~L~~L~lS~NaI~ri-------- 308 (873)
T KOG4194|consen 248 QNLKLQRNDISK----LDDGAFYGLEKMEHLNLETNRLQAVNEG-------WLFGLTSLEQLDLSYNAIQRI-------- 308 (873)
T ss_pred hhhhhhhcCccc----ccCcceeeecccceeecccchhhhhhcc-------cccccchhhhhccchhhhhee--------
Confidence 887765444332 1233455677777777766654332222 577788888888888877653
Q ss_pred hHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCC-CCCCCCcceeeeccCcCceEeCCcc
Q 002362 766 DQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP-LGKLPSLEKLSISFMCSVKRVDNEI 844 (930)
Q Consensus 766 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~ 844 (930)
-.+.+..+++|+.|+|++|.++..-+..+..++.|+.|+|+.|.+...-.. |..+.+|+.|+|+.+.---.+.+
T Consensus 309 ---h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED-- 383 (873)
T KOG4194|consen 309 ---HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED-- 383 (873)
T ss_pred ---ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec--
Confidence 345677788888888888888873355677888888888888865432222 67788888888886542111211
Q ss_pred ccCcccccCccccceeeccc-----------cccccceeeeccCCccCCCCCCCCCCCCccEEEEe
Q 002362 845 LGIEITIAFPKLKSLTISWI-----------IMPRLSSLTFDSCPKLKALPDHFHQTTTLKEFNIG 899 (930)
Q Consensus 845 ~~~~~~~~f~~L~~L~l~~~-----------~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~ 899 (930)
+.....++|+|+.|.+.+| .++.|+.|++.+|+.-.-=|..+..+ .|++|.+.
T Consensus 384 -aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 384 -AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred -chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 1111125777888887777 57778888887775333335566666 77777654
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.4e-21 Score=206.39 Aligned_cols=332 Identities=18% Similarity=0.173 Sum_probs=252.4
Q ss_pred cCcceeEEEEEecCCccc-cccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccC
Q 002362 527 FDEKVRHLLLIVGNGASF-PVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIP 605 (930)
Q Consensus 527 ~~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp 605 (930)
.|...+.|.+..+.+.++ +..+.++++|+.+.+..|.... .|.+.....+|..|+|.+|... .++ .
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~-------IP~f~~~sghl~~L~L~~N~I~----sv~--s 142 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR-------IPRFGHESGHLEKLDLRHNLIS----SVT--S 142 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhh-------cccccccccceeEEeeeccccc----ccc--H
Confidence 677888888888887654 4557889999999999886322 3444455667999999976544 333 2
Q ss_pred cccccCCCCCeeeccCCccccccc-ccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCC-cCCCCC
Q 002362 606 RNIERLVHLRYLNLSNQSIRKLPD-TLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPV-GIGRLT 683 (930)
Q Consensus 606 ~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~ 683 (930)
+.+.-++.||.||||.|.|+.+|. ++..=.++++|+|++|.+..---..|..+.+|-.|.|+.| .++.+|. .|.+|+
T Consensus 143 e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~ 221 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLP 221 (873)
T ss_pred HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcc
Confidence 567788899999999999999886 4566689999999999843333455888899999999998 5566674 566699
Q ss_pred CCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCc
Q 002362 684 SLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKN 763 (930)
Q Consensus 684 ~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~ 763 (930)
.|+.|++..+...- .-+..+..|.+|++|.+-.+.....-.. .+..+.+++.|+|+.|.++..
T Consensus 222 ~L~~LdLnrN~iri----ve~ltFqgL~Sl~nlklqrN~I~kL~DG-------~Fy~l~kme~l~L~~N~l~~v------ 284 (873)
T KOG4194|consen 222 KLESLDLNRNRIRI----VEGLTFQGLPSLQNLKLQRNDISKLDDG-------AFYGLEKMEHLNLETNRLQAV------ 284 (873)
T ss_pred hhhhhhccccceee----ehhhhhcCchhhhhhhhhhcCcccccCc-------ceeeecccceeecccchhhhh------
Confidence 99999987655432 1255678888888888666544322112 466789999999999988752
Q ss_pred cchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCC-CCCCCCcceeeeccCcCceEeCC
Q 002362 764 EDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP-LGKLPSLEKLSISFMCSVKRVDN 842 (930)
Q Consensus 764 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~ 842 (930)
--..+..++.|+.|+++.|.+...-++....+++|+.|+|++|.+...-+. |..|..|+.|+|+.+. +.++.+
T Consensus 285 -----n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e 358 (873)
T KOG4194|consen 285 -----NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAE 358 (873)
T ss_pred -----hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHh
Confidence 233566789999999999998875566667889999999999977654333 8888999999998653 444433
Q ss_pred ccccCcccccCccccceeeccc--------------cccccceeeeccCCccCCCC-CCCCCCCCccEEEEecC
Q 002362 843 EILGIEITIAFPKLKSLTISWI--------------IMPRLSSLTFDSCPKLKALP-DHFHQTTTLKEFNIGWN 901 (930)
Q Consensus 843 ~~~~~~~~~~f~~L~~L~l~~~--------------~lp~L~~L~l~~c~~L~~lp-~~l~~l~~L~~L~l~~n 901 (930)
..+. ++.+|++|+++.| .||+|++|.+.+| +++.+| ..+..+++|++|++.+|
T Consensus 359 ~af~-----~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 359 GAFV-----GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred hHHH-----HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCC
Confidence 3322 6789999999888 6999999999998 899998 35778999999999997
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.81 E-value=1.7e-19 Score=226.27 Aligned_cols=295 Identities=22% Similarity=0.266 Sum_probs=228.2
Q ss_pred HHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCC-CCCeeeccCCcccccccccccCCcccEEeccCCCCCcccc
Q 002362 574 LERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLV-HLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELP 652 (930)
Q Consensus 574 ~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp 652 (930)
....|.+|++|+.|.+.++...........+|..+..++ .||+|++.++.++.+|..+ .+.+|+.|++++|. +..+|
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~ 627 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-LEKLW 627 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc-ccccc
Confidence 345689999999999975421100011234677777764 5999999999999999988 58999999999988 88999
Q ss_pred ccccccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhh
Q 002362 653 QGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGE 732 (930)
Q Consensus 653 ~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~ 732 (930)
.++..+++|+.|+++++..+..+|. ++.+++|++|++.++.... .++..+..+++|+.|++.++..++.+|.
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~----~lp~si~~L~~L~~L~L~~c~~L~~Lp~--- 699 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLV----ELPSSIQYLNKLEDLDMSRCENLEILPT--- 699 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCcc----ccchhhhccCCCCEEeCCCCCCcCccCC---
Confidence 9999999999999999877788874 8899999999987665433 2466788888999888888777776664
Q ss_pred hhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccc--------------
Q 002362 733 AKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMM-------------- 798 (930)
Q Consensus 733 ~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~-------------- 798 (930)
.+ ++++|+.|++++|..... ++ ..+++|+.|++++|.+.. +|..+.
T Consensus 700 ----~i-~l~sL~~L~Lsgc~~L~~-----------~p---~~~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~ 759 (1153)
T PLN03210 700 ----GI-NLKSLYRLNLSGCSRLKS-----------FP---DISTNISWLDLDETAIEE-FPSNLRLENLDELILCEMKS 759 (1153)
T ss_pred ----cC-CCCCCCEEeCCCCCCccc-----------cc---cccCCcCeeecCCCcccc-ccccccccccccccccccch
Confidence 22 678999999998754321 11 123567777777776655 554321
Q ss_pred ----------------cccCccEEEeeCCCCCCCCCC-CCCCCCcceeeeccCcCceEeCCccccCcccccCccccceee
Q 002362 799 ----------------SLTNLRSLDLDDCENCEKLPP-LGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTI 861 (930)
Q Consensus 799 ----------------~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l 861 (930)
.+++|+.|+|++|.....+|. ++++++|+.|+|++|..++.++... .+++|+.|.+
T Consensus 760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-------~L~sL~~L~L 832 (1153)
T PLN03210 760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-------NLESLESLDL 832 (1153)
T ss_pred hhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-------CccccCEEEC
Confidence 235788888888887777776 8999999999999998887776432 4789999999
Q ss_pred ccc--------cccccceeeeccCCccCCCCCCCCCCCCccEEEEecCchhhHH
Q 002362 862 SWI--------IMPRLSSLTFDSCPKLKALPDHFHQTTTLKEFNIGWNCGLLEK 907 (930)
Q Consensus 862 ~~~--------~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~nc~~l~~ 907 (930)
++| ..++|+.|+++++ .++.+|..+..+++|+.|++++ |+.|+.
T Consensus 833 s~c~~L~~~p~~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~-C~~L~~ 884 (1153)
T PLN03210 833 SGCSRLRTFPDISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNG-CNNLQR 884 (1153)
T ss_pred CCCCccccccccccccCEeECCCC-CCccChHHHhcCCCCCEEECCC-CCCcCc
Confidence 987 2457999999987 7889999999999999999999 988765
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=8.1e-22 Score=199.50 Aligned_cols=239 Identities=22% Similarity=0.234 Sum_probs=149.8
Q ss_pred eEEEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccC
Q 002362 532 RHLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERL 611 (930)
Q Consensus 532 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L 611 (930)
.-+.++.+.....|+.+..+..+..+.++.+... . ++........|+.|+.++ + .+.++|++|+.+
T Consensus 71 ~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls------~-lp~~i~s~~~l~~l~~s~---n----~~~el~~~i~~~ 136 (565)
T KOG0472|consen 71 TVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS------E-LPEQIGSLISLVKLDCSS---N----ELKELPDSIGRL 136 (565)
T ss_pred eEEEeccchhhhCCHHHHHHHHHHHhhcccchHh------h-ccHHHhhhhhhhhhhccc---c----ceeecCchHHHH
Confidence 3444555555555666666666666666555321 1 223345556666666663 3 456667777777
Q ss_pred CCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCCce
Q 002362 612 VHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEF 691 (930)
Q Consensus 612 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 691 (930)
..|..|+..+|.|.++|..++++..|..|++.+|. +..+|+....|+.|+||+...| .++.+|+.+|.|.+|..|++.
T Consensus 137 ~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 137 LDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLR 214 (565)
T ss_pred hhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhh
Confidence 77777777777777777777777777777777776 6666666666777777777666 567777777777777777765
Q ss_pred EeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhh
Q 002362 692 YVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLE 771 (930)
Q Consensus 692 ~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 771 (930)
.+.... ...|..+..|..|....+.. +.++. ..+..+.++..|+|..|.+.. +++
T Consensus 215 ~Nki~~------lPef~gcs~L~Elh~g~N~i-~~lpa------e~~~~L~~l~vLDLRdNklke------------~Pd 269 (565)
T KOG0472|consen 215 RNKIRF------LPEFPGCSLLKELHVGENQI-EMLPA------EHLKHLNSLLVLDLRDNKLKE------------VPD 269 (565)
T ss_pred hccccc------CCCCCccHHHHHHHhcccHH-HhhHH------HHhcccccceeeecccccccc------------Cch
Confidence 554332 22455555555554433221 11111 134466777777777777665 556
Q ss_pred cCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCC
Q 002362 772 FLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCEN 813 (930)
Q Consensus 772 ~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~ 813 (930)
.+.-+.+|++|++++|.+++ +|..++++ +|+.|-+.+|++
T Consensus 270 e~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred HHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCch
Confidence 66666777778888777777 77777777 777777777653
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.70 E-value=4.9e-19 Score=197.73 Aligned_cols=328 Identities=22% Similarity=0.267 Sum_probs=188.8
Q ss_pred ccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCc
Q 002362 544 FPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQS 623 (930)
Q Consensus 544 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~ 623 (930)
+|..+.....+..|.+..|-.. . .+-.+..+.-+|++||+++| .+...|..|..+.+|+.|+++.|.
T Consensus 13 ip~~i~~~~~~~~ln~~~N~~l-----~-~pl~~~~~~v~L~~l~lsnn-------~~~~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 13 IPEQILNNEALQILNLRRNSLL-----S-RPLEFVEKRVKLKSLDLSNN-------QISSFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred cchhhccHHHHHhhhccccccc-----c-CchHHhhheeeeEEeecccc-------ccccCCchhhhHHHHhhcccchhh
Confidence 3444444444555555555311 1 11222333444888888843 456678888888888888888888
Q ss_pred ccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCC-------
Q 002362 624 IRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGG------- 696 (930)
Q Consensus 624 i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~------- 696 (930)
|..+|.+++++.+|++|+|.+|. +..+|.++..+++|++|+++.| ....+|.-|..++.+..+...++...
T Consensus 80 i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ 157 (1081)
T KOG0618|consen 80 IRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS 157 (1081)
T ss_pred HhhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccccccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhcccc
Confidence 88888888888888888888776 8888888888888888888887 44556666555555555444433110
Q ss_pred --------CCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCC---cCCC---
Q 002362 697 --------GGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDG---QRRK--- 762 (930)
Q Consensus 697 --------~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~---~~~~--- 762 (930)
+.+.+.+...+..+++ .|++..+... ...+..+.+|+.|....|.+.... +...
T Consensus 158 ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~----------~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~ 225 (1081)
T KOG0618|consen 158 IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME----------VLDLSNLANLEVLHCERNQLSELEISGPSLTALY 225 (1081)
T ss_pred chhhhhhhhhcccchhcchhhhhe--eeecccchhh----------hhhhhhccchhhhhhhhcccceEEecCcchheee
Confidence 0011111222222222 2344343332 012233334444333333322110 0000
Q ss_pred -ccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCC----------------------CCCC
Q 002362 763 -NEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCE----------------------KLPP 819 (930)
Q Consensus 763 -~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~----------------------~l~~ 819 (930)
....-.....-..+.+|++++++.+.+.. +|+|++.+.+|+.|....|.++. .+|+
T Consensus 226 a~~n~l~~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~ 304 (1081)
T KOG0618|consen 226 ADHNPLTTLDVHPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPP 304 (1081)
T ss_pred eccCcceeeccccccccceeeecchhhhhc-chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCC
Confidence 00000011112235689999999999888 89999988888888888776422 2333
Q ss_pred -CCCCCCcceeeeccCcCceEeCCccccC--------------------cccccCccccceeeccc-----------ccc
Q 002362 820 -LGKLPSLEKLSISFMCSVKRVDNEILGI--------------------EITIAFPKLKSLTISWI-----------IMP 867 (930)
Q Consensus 820 -l~~l~~L~~L~L~~~~~l~~~~~~~~~~--------------------~~~~~f~~L~~L~l~~~-----------~lp 867 (930)
+..+.+|+.|+|..+. +...+..+... .....++.|+.|.+.+| .++
T Consensus 305 ~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~ 383 (1081)
T KOG0618|consen 305 FLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK 383 (1081)
T ss_pred cccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccc
Confidence 5567888888887543 22222211100 01124455666666655 577
Q ss_pred ccceeeeccCCccCCCCCC-CCCCCCccEEEEecC
Q 002362 868 RLSSLTFDSCPKLKALPDH-FHQTTTLKEFNIGWN 901 (930)
Q Consensus 868 ~L~~L~l~~c~~L~~lp~~-l~~l~~L~~L~l~~n 901 (930)
+|+.|++++| .|..+|.. +.+++.|++|++|||
T Consensus 384 hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 384 HLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGN 417 (1081)
T ss_pred ceeeeeeccc-ccccCCHHHHhchHHhHHHhcccc
Confidence 8888888887 67778753 567788888888887
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=1.7e-19 Score=182.82 Aligned_cols=263 Identities=22% Similarity=0.221 Sum_probs=209.8
Q ss_pred ceeEEEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccc
Q 002362 530 KVRHLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIE 609 (930)
Q Consensus 530 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~ 609 (930)
....+-+..++...+......+..+.+|.+.++.... ++..+..+..+..|+.++| .+..+|..++
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~-------lp~aig~l~~l~~l~vs~n-------~ls~lp~~i~ 111 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQ-------LPAAIGELEALKSLNVSHN-------KLSELPEQIG 111 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhhh-------CCHHHHHHHHHHHhhcccc-------hHhhccHHHh
Confidence 3455666677776667778888889999888875321 2334667777888888843 5678899999
Q ss_pred cCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCC
Q 002362 610 RLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLD 689 (930)
Q Consensus 610 ~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 689 (930)
.+..|+.|+.++|.+.++|++++.+..|+.|+..+|+ +..+|.++..+.+|..|++.+| .+..+|+..-.|+.|++|+
T Consensus 112 s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld 189 (565)
T KOG0472|consen 112 SLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLD 189 (565)
T ss_pred hhhhhhhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999887 8899999999999999999988 5677777666699999998
Q ss_pred ceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHH
Q 002362 690 EFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLL 769 (930)
Q Consensus 690 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 769 (930)
...+.... ++..++.+.+|..|++..++... +| .+.+|..|..|+++.|.+... -
T Consensus 190 ~~~N~L~t-----lP~~lg~l~~L~~LyL~~Nki~~-lP--------ef~gcs~L~Elh~g~N~i~~l-----------p 244 (565)
T KOG0472|consen 190 CNSNLLET-----LPPELGGLESLELLYLRRNKIRF-LP--------EFPGCSLLKELHVGENQIEML-----------P 244 (565)
T ss_pred cchhhhhc-----CChhhcchhhhHHHHhhhccccc-CC--------CCCccHHHHHHHhcccHHHhh-----------H
Confidence 65554433 46677777777777766665432 23 366788899999988876541 2
Q ss_pred hhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCCCCCCCCcceeeeccCc
Q 002362 770 LEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPPLGKLPSLEKLSISFMC 835 (930)
Q Consensus 770 ~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 835 (930)
.+.+..+++|..|++..|.+.+ .|+.++-+.+|.+|++++|.+..-.+.+|++ .|+.|.+.|++
T Consensus 245 ae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 245 AEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 2345678999999999999988 9999999999999999999888766679999 99999999886
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.58 E-value=2.2e-17 Score=184.76 Aligned_cols=255 Identities=20% Similarity=0.173 Sum_probs=133.6
Q ss_pred eeEEEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCccccc
Q 002362 531 VRHLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIER 610 (930)
Q Consensus 531 ~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~ 610 (930)
+..+.+..+...+||..+..+.+|+.|.++.+.+.. .+....++.+|++|.|.+ + .+..+|.++..
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~-------vp~s~~~~~~l~~lnL~~---n----~l~~lP~~~~~ 112 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRS-------VPSSCSNMRNLQYLNLKN---N----RLQSLPASISE 112 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHhh-------Cchhhhhhhcchhheecc---c----hhhcCchhHHh
Confidence 555666666666667777777777777777665322 223356677777777773 3 45667777777
Q ss_pred CCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCCc
Q 002362 611 LVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDE 690 (930)
Q Consensus 611 L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 690 (930)
+++|.||+++.|.+...|..+..+..+..++.++|..+..++... ++++++..+.....++.+++.++. .|++
T Consensus 113 lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~n~l~~~~~~~i~~l~~--~ldL 185 (1081)
T KOG0618|consen 113 LKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS-----IKKLDLRLNVLGGSFLIDIYNLTH--QLDL 185 (1081)
T ss_pred hhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcccc-----chhhhhhhhhcccchhcchhhhhe--eeec
Confidence 777777777777777777777777777777777663344433321 555555555555566666666665 4554
Q ss_pred eEeCCCCCcCCCcccccccccCCCcCCeeeeeccc--CC-CCh------hh--hhhccccCCCCCCeeEEEeeCCCCCCc
Q 002362 691 FYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLG--NV-TDV------GE--AKRLELDKMKNLSCLKLLFNKEEGDGQ 759 (930)
Q Consensus 691 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~--~~-~~~------~~--~~~~~l~~~~~L~~L~L~~~~~~~~~~ 759 (930)
..+... ...+..+.+|+.|....+.... .. +.. .. ........-.+|+.+++++|.+.....
T Consensus 186 r~N~~~-------~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~ 258 (1081)
T KOG0618|consen 186 RYNEME-------VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPE 258 (1081)
T ss_pred ccchhh-------hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchH
Confidence 433322 0112233333332211111100 00 000 00 000011123567777777777665200
Q ss_pred CC-----------CccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCC
Q 002362 760 RR-----------KNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENC 814 (930)
Q Consensus 760 ~~-----------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~ 814 (930)
+. ....-..++..+....+|++|.+..|.+.. +|.....+++|+.|+|..|.+.
T Consensus 259 wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~ 323 (1081)
T KOG0618|consen 259 WIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLP 323 (1081)
T ss_pred HHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhcccc
Confidence 00 000001123333334444444444444444 5666666889999999988543
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=1.3e-14 Score=168.66 Aligned_cols=247 Identities=22% Similarity=0.203 Sum_probs=143.4
Q ss_pred cceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcc
Q 002362 583 SLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMR 662 (930)
Q Consensus 583 ~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~ 662 (930)
.-.+|++++ . .+..+|..+. .+|+.|++++|.++.+|.. +++|++|++++|. +..+|.. .++|+
T Consensus 202 ~~~~LdLs~---~----~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~ 265 (788)
T PRK15387 202 GNAVLNVGE---S----GLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLL 265 (788)
T ss_pred CCcEEEcCC---C----CCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccc
Confidence 355677773 2 4556676665 3677777777777777652 4677777777765 6666642 35667
Q ss_pred eEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCC
Q 002362 663 HLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMK 742 (930)
Q Consensus 663 ~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~ 742 (930)
.|++++| .+..+|... ++|+.|++..+.... ++. .+++|+.|++.+|.... ++. -..
T Consensus 266 ~L~Ls~N-~L~~Lp~lp---~~L~~L~Ls~N~Lt~-----LP~---~p~~L~~LdLS~N~L~~-Lp~----------lp~ 322 (788)
T PRK15387 266 ELSIFSN-PLTHLPALP---SGLCKLWIFGNQLTS-----LPV---LPPGLQELSVSDNQLAS-LPA----------LPS 322 (788)
T ss_pred eeeccCC-chhhhhhch---hhcCEEECcCCcccc-----ccc---cccccceeECCCCcccc-CCC----------Ccc
Confidence 7777666 345555422 345555544333221 111 12455555555553322 221 012
Q ss_pred CCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCCCCC
Q 002362 743 NLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPPLGK 822 (930)
Q Consensus 743 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~ 822 (930)
+|+.|.+++|.++. ++. .+++|+.|++++|.+.. +|.. .++|+.|++++|.+. .+|.+
T Consensus 323 ~L~~L~Ls~N~L~~------------LP~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l-- 380 (788)
T PRK15387 323 ELCKLWAYNNQLTS------------LPT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL-- 380 (788)
T ss_pred cccccccccCcccc------------ccc---cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc--
Confidence 45566666665543 121 12467777777776665 5542 245666666666544 34442
Q ss_pred CCCcceeeeccCcCceEeCCccccCcccccCccccceeeccc---c----ccccceeeeccCCccCCCCCCCCCCCCccE
Q 002362 823 LPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWI---I----MPRLSSLTFDSCPKLKALPDHFHQTTTLKE 895 (930)
Q Consensus 823 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~---~----lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~ 895 (930)
.++|+.|+|++|. ++.++. .+++|+.|++++| . +.+|+.|++++| .++.+|..+..+++|+.
T Consensus 381 ~~~L~~LdLs~N~-Lt~LP~---------l~s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~ 449 (788)
T PRK15387 381 PSGLKELIVSGNR-LTSLPV---------LPSELKELMVSGNRLTSLPMLPSGLLSLSVYRN-QLTRLPESLIHLSSETT 449 (788)
T ss_pred ccccceEEecCCc-ccCCCC---------cccCCCEEEccCCcCCCCCcchhhhhhhhhccC-cccccChHHhhccCCCe
Confidence 2456667776442 221111 2345666666666 1 236888999987 68899999999999999
Q ss_pred EEEecC
Q 002362 896 FNIGWN 901 (930)
Q Consensus 896 L~l~~n 901 (930)
|++++|
T Consensus 450 LdLs~N 455 (788)
T PRK15387 450 VNLEGN 455 (788)
T ss_pred EECCCC
Confidence 999997
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=4.2e-14 Score=165.65 Aligned_cols=243 Identities=21% Similarity=0.270 Sum_probs=137.5
Q ss_pred cceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcc
Q 002362 583 SLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMR 662 (930)
Q Consensus 583 ~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~ 662 (930)
+..+|++++ . .++.+|..+. .+|+.|+|++|.|+.+|..+. .+|++|++++|. +..+|..+. .+|+
T Consensus 179 ~~~~L~L~~---~----~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~ 244 (754)
T PRK15370 179 NKTELRLKI---L----GLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQ 244 (754)
T ss_pred CceEEEeCC---C----CcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--cccc
Confidence 456677763 3 4555666553 467777777777777776654 477777777776 666776543 3677
Q ss_pred eEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCC
Q 002362 663 HLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMK 742 (930)
Q Consensus 663 ~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~ 742 (930)
.|++++| .+..+|..+. ++|+.|++.++.... + +..+. .+|+.|++.+|... .++. .+ ..
T Consensus 245 ~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~N~L~~-L----P~~l~--~sL~~L~Ls~N~Lt-~LP~-------~l--p~ 304 (754)
T PRK15370 245 EMELSIN-RITELPERLP--SALQSLDLFHNKISC-L----PENLP--EELRYLSVYDNSIR-TLPA-------HL--PS 304 (754)
T ss_pred EEECcCC-ccCcCChhHh--CCCCEEECcCCccCc-c----ccccC--CCCcEEECCCCccc-cCcc-------cc--hh
Confidence 7777776 3456666553 456666655433221 1 11111 24455554444322 1221 11 13
Q ss_pred CCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCC-CC
Q 002362 743 NLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP-LG 821 (930)
Q Consensus 743 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~ 821 (930)
+|+.|++++|.+.. ++.. .+++|+.|++++|.+.. +|..+. ++|+.|+|++|.+. .+|. +
T Consensus 305 sL~~L~Ls~N~Lt~------------LP~~--l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l- 365 (754)
T PRK15370 305 GITHLNVQSNSLTA------------LPET--LPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL- 365 (754)
T ss_pred hHHHHHhcCCcccc------------CCcc--ccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh-
Confidence 56667777766553 1211 13567777777777666 666553 57777777777654 3443 2
Q ss_pred CCCCcceeeeccCcCceEeCCccccCcccccCccccceeeccccccccceeeeccCCccCCCCCCCC----CCCCccEEE
Q 002362 822 KLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWIIMPRLSSLTFDSCPKLKALPDHFH----QTTTLKEFN 897 (930)
Q Consensus 822 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~lp~L~~L~l~~c~~L~~lp~~l~----~l~~L~~L~ 897 (930)
.++|+.|+|++|. +..++.. + .++|+.|++++| ++..+|..+. .++++..|+
T Consensus 366 -p~~L~~LdLs~N~-Lt~LP~~---------l------------~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~ 421 (754)
T PRK15370 366 -PPTITTLDVSRNA-LTNLPEN---------L------------PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRII 421 (754)
T ss_pred -cCCcCEEECCCCc-CCCCCHh---------H------------HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEE
Confidence 2567777777543 2222111 0 135677777776 5666665443 346778888
Q ss_pred EecCc
Q 002362 898 IGWNC 902 (930)
Q Consensus 898 l~~nc 902 (930)
+.+|.
T Consensus 422 L~~Np 426 (754)
T PRK15370 422 VEYNP 426 (754)
T ss_pred eeCCC
Confidence 88864
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.43 E-value=3.8e-15 Score=133.92 Aligned_cols=166 Identities=26% Similarity=0.285 Sum_probs=115.0
Q ss_pred cccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCc
Q 002362 608 IERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRT 687 (930)
Q Consensus 608 i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 687 (930)
+.++.+.+.|.||+|+++.+|+.|..|.+|+.|++.+|. +.++|.+++.|++|++|++.-| .+..+|.+||.++.|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhh
Confidence 345667778888888888888888888888888888877 8888888888888888888766 56778888888888888
Q ss_pred CCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchH
Q 002362 688 LDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQ 767 (930)
Q Consensus 688 L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 767 (930)
|++.++...... .|. .+..+..|+.|.|+.|.+.-
T Consensus 107 ldltynnl~e~~---------------------------lpg-------nff~m~tlralyl~dndfe~----------- 141 (264)
T KOG0617|consen 107 LDLTYNNLNENS---------------------------LPG-------NFFYMTTLRALYLGDNDFEI----------- 141 (264)
T ss_pred hhcccccccccc---------------------------CCc-------chhHHHHHHHHHhcCCCccc-----------
Confidence 887654433210 111 23334455566666655432
Q ss_pred HHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCCCCC
Q 002362 768 LLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPPLGK 822 (930)
Q Consensus 768 ~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~ 822 (930)
++...+.+++|+.|.+..|.+.. +|..++.+..|++|.+.+|.+.-..|.+++
T Consensus 142 -lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 142 -LPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred -CChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 45556666777777777777666 777777777777777777765544443444
No 18
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.42 E-value=5.7e-14 Score=167.11 Aligned_cols=312 Identities=25% Similarity=0.257 Sum_probs=203.0
Q ss_pred ccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCc-ccccCCCCCeeeccCCc-cc
Q 002362 548 TCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPR-NIERLVHLRYLNLSNQS-IR 625 (930)
Q Consensus 548 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~-i~ 625 (930)
.......|...+.++.+... .. -..++.|++|-+.+|.. .+..++. .|..|++||+|||++|. +.
T Consensus 519 ~~~~~~~rr~s~~~~~~~~~-------~~-~~~~~~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~ 585 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEHI-------AG-SSENPKLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLS 585 (889)
T ss_pred ccchhheeEEEEeccchhhc-------cC-CCCCCccceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccC
Confidence 34456778888777753211 11 23455799999885532 1344443 37789999999999876 88
Q ss_pred ccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCccc
Q 002362 626 KLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKAC 705 (930)
Q Consensus 626 ~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~ 705 (930)
+||++|++|-+||+|+++++. +..+|.++.+|++|.||++..+..+..+|..+..|++||+|.++...... ...
T Consensus 586 ~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-----~~~ 659 (889)
T KOG4658|consen 586 KLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN-----DKL 659 (889)
T ss_pred cCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc-----chh
Confidence 999999999999999999998 89999999999999999999887666666666669999999988655222 144
Q ss_pred ccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCC----eeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcce
Q 002362 706 RLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLS----CLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRK 781 (930)
Q Consensus 706 ~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~----~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 781 (930)
.+.++.+|+.|....+..... ... + .+..+..|. .+.+.++... .....+..+.+|+.
T Consensus 660 ~l~el~~Le~L~~ls~~~~s~-~~~-e----~l~~~~~L~~~~~~l~~~~~~~~------------~~~~~~~~l~~L~~ 721 (889)
T KOG4658|consen 660 LLKELENLEHLENLSITISSV-LLL-E----DLLGMTRLRSLLQSLSIEGCSKR------------TLISSLGSLGNLEE 721 (889)
T ss_pred hHHhhhcccchhhheeecchh-HhH-h----hhhhhHHHHHHhHhhhhcccccc------------eeecccccccCcce
Confidence 566677777777555543221 000 0 122223333 2222222211 14556677899999
Q ss_pred EEEeeccCCCCCCcccc-----c-ccCccEEEeeCCCCCCCCCCCCCCCCcceeeeccCcCceEeCCccccCcccccCcc
Q 002362 782 LLIGSYRGKTVFPPWMM-----S-LTNLRSLDLDDCENCEKLPPLGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPK 855 (930)
Q Consensus 782 L~l~~~~~~~~~p~~~~-----~-l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~ 855 (930)
|.|.++.+......|.. . ++++..+.+.+|.....+.+....|+|+.|.+..|..++.+-+... .+..
T Consensus 722 L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k------~~~~ 795 (889)
T KOG4658|consen 722 LSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLK------ALLE 795 (889)
T ss_pred EEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHH------Hhhh
Confidence 99999988652233432 2 6688888888898877777777789999999999887655433221 2334
Q ss_pred ccceeeccccccccc-eeeeccCCccCCCCCCCCCCCCccEEEEecCchhhH
Q 002362 856 LKSLTISWIIMPRLS-SLTFDSCPKLKALPDHFHQTTTLKEFNIGWNCGLLE 906 (930)
Q Consensus 856 L~~L~l~~~~lp~L~-~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~nc~~l~ 906 (930)
++.+.+..+.++.|+ ..++.+.+.+..+|-.+ +.|.++.+.. ||++.
T Consensus 796 l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~---~~l~~~~ve~-~p~l~ 843 (889)
T KOG4658|consen 796 LKELILPFNKLEGLRMLCSLGGLPQLYWLPLSF---LKLEELIVEE-CPKLG 843 (889)
T ss_pred cccEEecccccccceeeecCCCCceeEecccCc---cchhheehhc-Ccccc
Confidence 443333222233332 22333333343344332 3488888888 88876
No 19
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.42 E-value=1.2e-10 Score=130.81 Aligned_cols=317 Identities=15% Similarity=0.092 Sum_probs=186.8
Q ss_pred ccCCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHH
Q 002362 167 IDEEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAK 246 (930)
Q Consensus 167 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 246 (930)
..++.++||+++++++...+...-. +.....+.|+|++|+|||++++.++++.......-..++|.+....+...++.
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 3456799999999999999854322 12345578999999999999999998533222223466777777778888999
Q ss_pred HHHHHhcCC-C-CCCccHHHHHHHHHHHhc--CceEEEEEeCccccC-ccChhhhhhhhc--cCCCCcE--EEEEcCChH
Q 002362 247 AIVEALDGH-E-SRLGEFQSLIKHIYESVA--GMCFLLVLDDVWDGN-YMKWEPFFHCLK--NGLHRSK--ILVTTRKKS 317 (930)
Q Consensus 247 ~i~~~l~~~-~-~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~-~~~~~~l~~~l~--~~~~gs~--iivTtr~~~ 317 (930)
.|++++... . ....+.+++...+.+.+. ++..+||||+++.-. ....+.+...+. ....+++ +|.++....
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcc
Confidence 999998752 2 122346677777777764 556899999997642 111222322222 1122333 566665543
Q ss_pred HHhhhC-------CcceEeCCCCChHHHHHHHHHHHcCC--CCchhhHHHHHHHHHHHHHcCCchhHHHHHHhhhc----
Q 002362 318 VASMMG-------STNIISIKELTEEECRLLFNKIAFSD--RPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLMR---- 384 (930)
Q Consensus 318 v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~l~---- 384 (930)
+..... ....+.+.+++.++..+++..++... ...-.+..++.+++......|..+.|+..+-.+..
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 332211 12467999999999999998876321 11122334455555444446667888777654321
Q ss_pred -CC--CCHHHHHHHHhcccccchhhhhhHHHHHHHhhhcCChhHHHHHhHhcCC-CC-CcccChHHHHHH--HHHhCCcC
Q 002362 385 -SK--ETEEEWRRILNSGLWKVEEIEKDILSSLLLSYNDLPSKVKKCFSYCAIF-PK-DYNIEKDRLITL--WMAQGYLD 457 (930)
Q Consensus 385 -~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~lsy~~L~~~~k~cf~~~s~f-p~-~~~i~~~~Li~~--w~a~g~i~ 457 (930)
+. -+.++...+.+.. -.....-.+..||.+.|..+..++.. .. ...+....+... .+++.+-.
T Consensus 265 ~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred cCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 11 1345555444321 11223456789999888766554422 21 134555555432 33332211
Q ss_pred CCcchhHHHHHHHHHHHHHHccCCccccc--CCCCceeeEEec
Q 002362 458 TEQDEEMESKGEEYFGILASRSFFQEFTK--SYDNCIMQCKMH 498 (930)
Q Consensus 458 ~~~~~~~e~~~~~~~~~L~~~~l~~~~~~--~~~~~~~~~~mh 498 (930)
.. . .......|+.+|...++++.... +..|+.+.++++
T Consensus 335 ~~--~-~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~ 374 (394)
T PRK00411 335 EP--R-THTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLS 374 (394)
T ss_pred Cc--C-cHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEec
Confidence 10 0 12334569999999999986543 224555555554
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.42 E-value=5.6e-13 Score=156.30 Aligned_cols=241 Identities=22% Similarity=0.277 Sum_probs=136.3
Q ss_pred eeEEEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCccccc
Q 002362 531 VRHLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIER 610 (930)
Q Consensus 531 ~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~ 610 (930)
...+.+....+..+|..+ .++++.|.+.+|.+... +..+ +++|+.|++++| .+..+|..+.
T Consensus 180 ~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~LtsL------P~~l---~~nL~~L~Ls~N-------~LtsLP~~l~- 240 (754)
T PRK15370 180 KTELRLKILGLTTIPACI--PEQITTLILDNNELKSL------PENL---QGNIKTLYANSN-------QLTSIPATLP- 240 (754)
T ss_pred ceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCCcC------Chhh---ccCCCEEECCCC-------ccccCChhhh-
Confidence 345556555555555443 25788888888764321 2222 247888888854 3456676554
Q ss_pred CCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCCc
Q 002362 611 LVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDE 690 (930)
Q Consensus 611 L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 690 (930)
.+|+.|+|++|.+..+|..+. .+|++|++++|. +..+|..+. ++|++|++++| .+..+|..+. ++|+.|++
T Consensus 241 -~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~L 311 (754)
T PRK15370 241 -DTIQEMELSINRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNV 311 (754)
T ss_pred -ccccEEECcCCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHh
Confidence 368888888888888887764 578888888776 667787654 47888888887 5566665443 35666665
Q ss_pred eEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHh
Q 002362 691 FYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLL 770 (930)
Q Consensus 691 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 770 (930)
..+.... ++..+ ..+|+.|.+.++... .++. .+ .++|+.|++++|.+.. ++
T Consensus 312 s~N~Lt~-----LP~~l--~~sL~~L~Ls~N~Lt-~LP~-------~l--~~sL~~L~Ls~N~L~~------------LP 362 (754)
T PRK15370 312 QSNSLTA-----LPETL--PPGLKTLEAGENALT-SLPA-------SL--PPELQVLDVSKNQITV------------LP 362 (754)
T ss_pred cCCcccc-----CCccc--cccceeccccCCccc-cCCh-------hh--cCcccEEECCCCCCCc------------CC
Confidence 5443321 11111 134444444444322 1221 11 1456666666665543 12
Q ss_pred hcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCC-----CCCCCCcceeeeccC
Q 002362 771 EFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP-----LGKLPSLEKLSISFM 834 (930)
Q Consensus 771 ~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-----l~~l~~L~~L~L~~~ 834 (930)
..+ +++|+.|+|++|.+.. +|..+. .+|+.|++++|.+. .+|. ++.+|++..|+|.++
T Consensus 363 ~~l--p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 363 ETL--PPTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred hhh--cCCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCC
Confidence 211 2456666666666655 555443 34666666666544 2332 233455556666543
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.42 E-value=4.6e-13 Score=155.86 Aligned_cols=36 Identities=31% Similarity=0.287 Sum_probs=16.4
Q ss_pred CCCeeeccCCcccccccccccCCcccEEeccCCCCCcccc
Q 002362 613 HLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELP 652 (930)
Q Consensus 613 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp 652 (930)
.|++|++++|.++.+|.. +++|+.|++++|. +..+|
T Consensus 283 ~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp 318 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLP 318 (788)
T ss_pred hcCEEECcCCcccccccc---ccccceeECCCCc-cccCC
Confidence 344455555555544431 2345555555543 33444
No 22
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.41 E-value=2.1e-11 Score=152.79 Aligned_cols=292 Identities=14% Similarity=0.206 Sum_probs=180.3
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeC-CCccHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVS-ETFEEFRVAKAI 248 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i 248 (930)
..++-|.. +.+.|.. ....+++.|+|++|.||||++..+.. .++.++|+++. .+.+...+...+
T Consensus 14 ~~~~~R~r----l~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~------~~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 14 HNTVVRER----LLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAA------GKNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred cccCcchH----HHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHH------hCCCeEEEecCcccCCHHHHHHHH
Confidence 34566654 4444432 23578999999999999999998874 23469999996 455666777777
Q ss_pred HHHhcCCCCC-------------CccHHHHHHHHHHHhc--CceEEEEEeCccccCccChhhhh-hhhccCCCCcEEEEE
Q 002362 249 VEALDGHESR-------------LGEFQSLIKHIYESVA--GMCFLLVLDDVWDGNYMKWEPFF-HCLKNGLHRSKILVT 312 (930)
Q Consensus 249 ~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~-~~l~~~~~gs~iivT 312 (930)
+..+...... ..+.......+...+. +.+++|||||+...+......+. ..++....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 7777421111 0122333444444443 67899999999765433434333 334444566788899
Q ss_pred cCChHHH---hhhCCcceEeCC----CCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHhhhcC
Q 002362 313 TRKKSVA---SMMGSTNIISIK----ELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLMRS 385 (930)
Q Consensus 313 tr~~~v~---~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~l~~ 385 (930)
||...-. .........++. +|+.+|+.++|.......-+ + +...+|.+.|+|.|+++..++..+..
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~---~----~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE---A----AESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC---H----HHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 9974211 111113355666 99999999999875432211 1 22677999999999999998877754
Q ss_pred CCC-HHHHHHHHhcccccchh-hhhhHHHHH-HHhhhcCChhHHHHHhHhcCCCCCcccChHHHHHHHHHhCCcCCCcch
Q 002362 386 KET-EEEWRRILNSGLWKVEE-IEKDILSSL-LLSYNDLPSKVKKCFSYCAIFPKDYNIEKDRLITLWMAQGYLDTEQDE 462 (930)
Q Consensus 386 ~~~-~~~w~~~l~~~~~~~~~-~~~~i~~~l-~lsy~~L~~~~k~cf~~~s~fp~~~~i~~~~Li~~w~a~g~i~~~~~~ 462 (930)
... .... . +.+.+ ....+...+ .-.++.||+..+..+...|+++ .|+.+.+- .+...
T Consensus 232 ~~~~~~~~---~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~------~l~~~---- 291 (903)
T PRK04841 232 NNSSLHDS---A----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIV------RVTGE---- 291 (903)
T ss_pred CCCchhhh---h----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHH------HHcCC----
Confidence 321 1110 0 11111 112244433 3347899999999999999996 34433222 11111
Q ss_pred hHHHHHHHHHHHHHHccCCcccccCCCCceeeEEecHHHHHHHHHhh
Q 002362 463 EMESKGEEYFGILASRSFFQEFTKSYDNCIMQCKMHDMVHDFGQFIS 509 (930)
Q Consensus 463 ~~e~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~mh~lv~~~a~~~s 509 (930)
+.+...+++|.+++++..... +....|+.|++++++.....
T Consensus 292 ---~~~~~~L~~l~~~~l~~~~~~---~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ---ENGQMRLEELERQGLFIQRMD---DSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---CcHHHHHHHHHHCCCeeEeec---CCCCEEehhHHHHHHHHHHH
Confidence 124667999999999753221 11135788999999988654
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.30 E-value=2.4e-13 Score=138.56 Aligned_cols=127 Identities=20% Similarity=0.199 Sum_probs=85.1
Q ss_pred CccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccC-Ccccccccc-
Q 002362 553 RMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSN-QSIRKLPDT- 630 (930)
Q Consensus 553 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~-~~i~~lp~~- 630 (930)
....+.|..|.+. .+++..|+.+++||.|||++|... .| -|..|.+|..|-.|-+-+ |+|+.+|+.
T Consensus 68 ~tveirLdqN~I~------~iP~~aF~~l~~LRrLdLS~N~Is----~I--~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS------SIPPGAFKTLHRLRRLDLSKNNIS----FI--APDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred cceEEEeccCCcc------cCChhhccchhhhceecccccchh----hc--ChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 3445556666432 236677888888888888865433 22 267777777776666666 778888764
Q ss_pred cccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCC-cCCCCCCCCcCCceE
Q 002362 631 LCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPV-GIGRLTSLRTLDEFY 692 (930)
Q Consensus 631 i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~ 692 (930)
|++|..||.|.+.-|.........++.|++|..|.+.+| ....++. .+..+.+++++.+-.
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhc
Confidence 677888888888877744455566788888888888777 4556665 466677777766543
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.27 E-value=6.6e-14 Score=126.05 Aligned_cols=101 Identities=30% Similarity=0.379 Sum_probs=57.5
Q ss_pred CCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCC
Q 002362 581 STSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLIN 660 (930)
Q Consensus 581 ~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~ 660 (930)
+.++..|.|++| .+..+|..|..|.+|+.|++++|.|+++|.+|+.|++|+.|+++-|. +..+|.+|+.++-
T Consensus 32 ~s~ITrLtLSHN-------Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~ 103 (264)
T KOG0617|consen 32 MSNITRLTLSHN-------KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPA 103 (264)
T ss_pred hhhhhhhhcccC-------ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCch
Confidence 334445555532 34455666666666666666666666666666666666666666555 5666666666666
Q ss_pred cceEeecCcccc-cccCCcCCCCCCCCcCC
Q 002362 661 MRHLLNYGTISL-RYMPVGIGRLTSLRTLD 689 (930)
Q Consensus 661 L~~L~l~~~~~~-~~~p~~i~~l~~L~~L~ 689 (930)
|+.|++..|+.. ..+|..|..|+.|+.|.
T Consensus 104 levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHH
Confidence 666666555322 24555555555555444
No 25
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.27 E-value=3.3e-09 Score=117.81 Aligned_cols=302 Identities=14% Similarity=0.108 Sum_probs=174.2
Q ss_pred cCCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHH-hcC---CeEEEEEeCCCccHHH
Q 002362 168 DEEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVK-RKF---DKILWVCVSETFEEFR 243 (930)
Q Consensus 168 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~ 243 (930)
.++.++||++++++|...|..... +.....+.|+|++|+|||++++.+++...-. ... -..+|+.+....+...
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 345799999999999999864322 2244578999999999999999999853211 111 1467788877777888
Q ss_pred HHHHHHHHhc---CCCC-CCccHHHHHHHHHHHhc--CceEEEEEeCccccCccChhhhhhhhcc-----CC--CCcEEE
Q 002362 244 VAKAIVEALD---GHES-RLGEFQSLIKHIYESVA--GMCFLLVLDDVWDGNYMKWEPFFHCLKN-----GL--HRSKIL 310 (930)
Q Consensus 244 ~~~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~-----~~--~gs~ii 310 (930)
++..|++++. ...+ ...+..+....+.+.+. +++++||||+++.-. .....+...+.. .. ....+|
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~-~~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLV-GDDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhc-cCCcHHHHhHhccccccCCCCCeEEEE
Confidence 9999999984 2211 12244555666666663 667899999997652 111222222111 11 223345
Q ss_pred EEcCChHHHhhhC-----C--cceEeCCCCChHHHHHHHHHHHcCC-CCchhhHHHHHHHHHHHHHcCCchhHH-HHHHh
Q 002362 311 VTTRKKSVASMMG-----S--TNIISIKELTEEECRLLFNKIAFSD-RPIEEREKLEQIGRKIANKCKGLPLAA-KIIGS 381 (930)
Q Consensus 311 vTtr~~~v~~~~~-----~--~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~l~~~~~~i~~~c~glPLai-~~~~~ 381 (930)
.+|+.......+. . ...+++.+.+.++..+++..++-.. ......++..+....++....|.|-.+ ..+-.
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~ 249 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRV 249 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5554333221111 1 2468999999999999999876311 111122333344555777777887543 33222
Q ss_pred hh----c-CC--CCHHHHHHHHhcccccchhhhhhHHHHHHHhhhcCChhHHHHHhHhcCCC--CCcccChHHHHHHH--
Q 002362 382 LM----R-SK--ETEEEWRRILNSGLWKVEEIEKDILSSLLLSYNDLPSKVKKCFSYCAIFP--KDYNIEKDRLITLW-- 450 (930)
Q Consensus 382 ~l----~-~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~lsy~~L~~~~k~cf~~~s~fp--~~~~i~~~~Li~~w-- 450 (930)
+. . +. -+.++...+.+.. -.....-++..||.+.|..+..+...- ++..+....+...+
T Consensus 250 a~~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 250 AGEIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 11 1 11 1333333333221 112234467789998886655544211 33446666666633
Q ss_pred HHhCCcCCCcchhHHHHHHHHHHHHHHccCCcccc
Q 002362 451 MAQGYLDTEQDEEMESKGEEYFGILASRSFFQEFT 485 (930)
Q Consensus 451 ~a~g~i~~~~~~~~e~~~~~~~~~L~~~~l~~~~~ 485 (930)
+++.+ .. ....+.....|+..|...+++....
T Consensus 320 ~~~~~-~~--~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 320 VCEDI-GV--DPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHhc-CC--CCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 22211 11 1122456677899999999998653
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.21 E-value=1.5e-09 Score=115.04 Aligned_cols=183 Identities=16% Similarity=0.116 Sum_probs=115.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHH----H
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIY----E 271 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~----~ 271 (930)
...++.|+|++|+|||||++.+++.... ..+ .++|+ +....+..+++..|...++..... .+.......+. .
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIE 117 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHH
Confidence 3458999999999999999999874221 111 22333 334457778899999888765332 22222333332 2
Q ss_pred H-hcCceEEEEEeCccccCccChhhhhhhhcc---CCCCcEEEEEcCChHHHhhhC----------CcceEeCCCCChHH
Q 002362 272 S-VAGMCFLLVLDDVWDGNYMKWEPFFHCLKN---GLHRSKILVTTRKKSVASMMG----------STNIISIKELTEEE 337 (930)
Q Consensus 272 ~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~---~~~gs~iivTtr~~~v~~~~~----------~~~~~~l~~L~~~~ 337 (930)
. ..+++.++|+||+|......++.+...... ......|++|.... ....+. ....+++++++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2 267889999999998765556665433221 12223455665543 222111 13467899999999
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHhhh
Q 002362 338 CRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLM 383 (930)
Q Consensus 338 ~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~l 383 (930)
..+++...+..........--.+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999987764322110111123568889999999999999998776
No 27
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.17 E-value=1.5e-10 Score=120.12 Aligned_cols=196 Identities=20% Similarity=0.177 Sum_probs=102.6
Q ss_pred eecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHH----
Q 002362 172 ICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKA---- 247 (930)
Q Consensus 172 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~---- 247 (930)
|+||++++++|.+++... ..+.+.|+|+.|+|||+|++.+.+. .+..-..++|+...+......+..-
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 72 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNESSLRSFIEET 72 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhhhHHHHHHHHH
Confidence 789999999999998642 3568999999999999999999883 3221114555555444332221111
Q ss_pred -----HHHHh----cCCCC------CCccHHHHHHHHHHHhc--CceEEEEEeCccccC-c-cChh----hhhhhhcc--
Q 002362 248 -----IVEAL----DGHES------RLGEFQSLIKHIYESVA--GMCFLLVLDDVWDGN-Y-MKWE----PFFHCLKN-- 302 (930)
Q Consensus 248 -----i~~~l----~~~~~------~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~-~-~~~~----~l~~~l~~-- 302 (930)
+.+.+ ..... ...........+.+.+. +++++||+||+.... . .... .+...+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 11112 11110 11222333344444442 445999999997643 0 1112 23333333
Q ss_pred CCCCcEEEEEcCChHHHhh--------hCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchh
Q 002362 303 GLHRSKILVTTRKKSVASM--------MGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPL 374 (930)
Q Consensus 303 ~~~gs~iivTtr~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPL 374 (930)
......+|+++........ .+....+.+++|+.+++++++...+-.. . .- +.-.+..++|+..+||.|.
T Consensus 153 ~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 153 SQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp --TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HH
T ss_pred ccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCCHH
Confidence 1233345555554444432 2334469999999999999999865433 1 11 1122336889999999999
Q ss_pred HHHH
Q 002362 375 AAKI 378 (930)
Q Consensus 375 ai~~ 378 (930)
.|..
T Consensus 230 ~l~~ 233 (234)
T PF01637_consen 230 YLQE 233 (234)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
No 28
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.16 E-value=3.8e-09 Score=119.51 Aligned_cols=290 Identities=18% Similarity=0.225 Sum_probs=189.3
Q ss_pred HHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCC-CccHHHHHHHHHHHhcCCCC
Q 002362 179 KNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSE-TFEEFRVAKAIVEALDGHES 257 (930)
Q Consensus 179 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~ 257 (930)
..++.+.|.. ..+.+.+.|.-++|.|||||+-.... ....=..+.|.+..+ +.+...+...++..+..-.+
T Consensus 24 R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p 95 (894)
T COG2909 24 RPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSYLIAALQQATP 95 (894)
T ss_pred cHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCc
Confidence 3455666643 34789999999999999999988864 122335799999865 66788888888888863222
Q ss_pred C-------------CccHHHHHHHHHHHhc--CceEEEEEeCccccCccChh-hhhhhhccCCCCcEEEEEcCChHHH--
Q 002362 258 R-------------LGEFQSLIKHIYESVA--GMCFLLVLDDVWDGNYMKWE-PFFHCLKNGLHRSKILVTTRKKSVA-- 319 (930)
Q Consensus 258 ~-------------~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~-~l~~~l~~~~~gs~iivTtr~~~v~-- 319 (930)
+ ..++..+...+...+. .++..+||||..-....... .+...+.....+-..|||||+..-.
T Consensus 96 ~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~l 175 (894)
T COG2909 96 TLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGL 175 (894)
T ss_pred cccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcc
Confidence 2 2334445555555553 56789999998764433333 3445555677788999999987422
Q ss_pred -hhhCCcceEeCC----CCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHhhhcCCCCHHHHHH
Q 002362 320 -SMMGSTNIISIK----ELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLMRSKETEEEWRR 394 (930)
Q Consensus 320 -~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~ 394 (930)
+.--.....++. .++.+|+-++|.......-+ +.-.+.+.+..+|-+-|+..++-.++...+.+.-..
T Consensus 176 a~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld-------~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~ 248 (894)
T COG2909 176 ARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD-------AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLR 248 (894)
T ss_pred cceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC-------hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhh
Confidence 211112334443 78999999999886522221 122778999999999999999988885545444333
Q ss_pred HHhcccccchhhhhhHHH-HHHHhhhcCChhHHHHHhHhcCCCCCcccChHHHHHHHHHhCCcCCCcchhHHHHHHHHHH
Q 002362 395 ILNSGLWKVEEIEKDILS-SLLLSYNDLPSKVKKCFSYCAIFPKDYNIEKDRLITLWMAQGYLDTEQDEEMESKGEEYFG 473 (930)
Q Consensus 395 ~l~~~~~~~~~~~~~i~~-~l~lsy~~L~~~~k~cf~~~s~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~e~~~~~~~~ 473 (930)
.+. +.+..+.. ...--++.||+++|..++-||+++. |. ..|+..- +-++-+...++
T Consensus 249 ~Ls-------G~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~---f~-~eL~~~L------------tg~~ng~amLe 305 (894)
T COG2909 249 GLS-------GAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR---FN-DELCNAL------------TGEENGQAMLE 305 (894)
T ss_pred hcc-------chHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH---hh-HHHHHHH------------hcCCcHHHHHH
Confidence 332 11111211 2334678999999999999999853 11 2233221 22345677899
Q ss_pred HHHHccCCcccccCCCCceeeEEecHHHHHHHHHhh
Q 002362 474 ILASRSFFQEFTKSYDNCIMQCKMHDMVHDFGQFIS 509 (930)
Q Consensus 474 ~L~~~~l~~~~~~~~~~~~~~~~mh~lv~~~a~~~s 509 (930)
+|.+++||-..-.+ ....|+.|.+..||.+.--
T Consensus 306 ~L~~~gLFl~~Ldd---~~~WfryH~LFaeFL~~r~ 338 (894)
T COG2909 306 ELERRGLFLQRLDD---EGQWFRYHHLFAEFLRQRL 338 (894)
T ss_pred HHHhCCCceeeecC---CCceeehhHHHHHHHHhhh
Confidence 99999998543322 2246899999999976543
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.14 E-value=4.4e-12 Score=138.47 Aligned_cols=89 Identities=21% Similarity=0.123 Sum_probs=46.5
Q ss_pred cCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccc-----cccCccEEEeeCCCC
Q 002362 739 DKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMM-----SLTNLRSLDLDDCEN 813 (930)
Q Consensus 739 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~-----~l~~L~~L~L~~~~~ 813 (930)
...++|+.|++++|.+.+. ....+...+..+++|++|++++|.+...-+..+. ..+.|++|++++|.+
T Consensus 190 ~~~~~L~~L~L~~n~i~~~-------~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 190 KANCNLEVLDLNNNGLTDE-------GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HhCCCCCEEeccCCccChH-------HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 3445677777776655431 1122444455566777777777665431111121 125677777777755
Q ss_pred CC----CC-CCCCCCCCcceeeeccC
Q 002362 814 CE----KL-PPLGKLPSLEKLSISFM 834 (930)
Q Consensus 814 ~~----~l-~~l~~l~~L~~L~L~~~ 834 (930)
.. .+ ..+..+++|++|++++|
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCC
Confidence 42 11 11444566667766643
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.13 E-value=1.8e-09 Score=117.13 Aligned_cols=277 Identities=18% Similarity=0.173 Sum_probs=144.5
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.+|+|+++.++.+..++...... +.....+.|+|++|+||||||+.+++. ....+ .++..+ .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKR-GEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhc-CCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHHH
Confidence 56999999999998887542211 234567889999999999999999884 32221 122221 111112222233
Q ss_pred HHhcCCCC-CCccHH----HHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChHHHhhhC-
Q 002362 250 EALDGHES-RLGEFQ----SLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKSVASMMG- 323 (930)
Q Consensus 250 ~~l~~~~~-~~~~~~----~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~- 323 (930)
..+..... -..+++ ...+.+...+.+.+..+|+|+..+... +...+ .+.+-|..||+...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~-----~~~~l---~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARS-----IRLDL---PPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccc-----eeecC---CCceEEeecCCcccCCHHHHH
Confidence 32211100 000000 111222333334444444444322110 00011 12345666777543332221
Q ss_pred -CcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHhhhcCCCCHHHHHHHHhccccc
Q 002362 324 -STNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLMRSKETEEEWRRILNSGLWK 402 (930)
Q Consensus 324 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~~ 402 (930)
....++++++++++..+++.+.+......-. .+....|++.|+|.|-.+..+...+ ..|........-.
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~----~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~~~I~ 239 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVEID----EEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGDGVIT 239 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCCCCCC
Confidence 1346899999999999999988754332211 2347889999999996554444432 2232221111000
Q ss_pred chhhhhhHHHHHHHhhhcCChhHHHHHh-HhcCCCCCcccChHHHHHHHHHhCCcCCCcchhHHHHHHHHHH-HHHHccC
Q 002362 403 VEEIEKDILSSLLLSYNDLPSKVKKCFS-YCAIFPKDYNIEKDRLITLWMAQGYLDTEQDEEMESKGEEYFG-ILASRSF 480 (930)
Q Consensus 403 ~~~~~~~i~~~l~lsy~~L~~~~k~cf~-~~s~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~e~~~~~~~~-~L~~~~l 480 (930)
...-......+...|..|+...+..+. ....|+.+ .+..+.+-... .. ..+.++..++ .|++.+|
T Consensus 240 -~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g~-----~~~~~~~~~e~~Li~~~l 306 (328)
T PRK00080 240 -KEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------GE-----ERDTIEDVYEPYLIQQGF 306 (328)
T ss_pred -HHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------CC-----CcchHHHHhhHHHHHcCC
Confidence 111123445566677888887776664 66667655 45554442221 11 1223444555 7899999
Q ss_pred Cccc
Q 002362 481 FQEF 484 (930)
Q Consensus 481 ~~~~ 484 (930)
++..
T Consensus 307 i~~~ 310 (328)
T PRK00080 307 IQRT 310 (328)
T ss_pred cccC
Confidence 9643
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.13 E-value=2.7e-12 Score=131.11 Aligned_cols=94 Identities=28% Similarity=0.413 Sum_probs=55.3
Q ss_pred CCcccC-cccccCCCCCeeeccCCccccc-ccccccCCcccEEeccCCCCCcccccc-ccccCCcceEeecCcccccccC
Q 002362 600 PLTRIP-RNIERLVHLRYLNLSNQSIRKL-PDTLCELYNLQKLDISCCCKLKELPQG-IGKLINMRHLLNYGTISLRYMP 676 (930)
Q Consensus 600 ~~~~lp-~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p 676 (930)
.|..+| ..|+.+++||.||||+|.|+.+ |..|..|..|-+|-+.+++.++.+|.+ |+.|..|+.|.+.-|. +..++
T Consensus 78 ~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~-i~Cir 156 (498)
T KOG4237|consen 78 QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH-INCIR 156 (498)
T ss_pred CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh-hcchh
Confidence 455554 3466677777777777776655 556666666666666664446666654 4666666666665552 22222
Q ss_pred -CcCCCCCCCCcCCceEeC
Q 002362 677 -VGIGRLTSLRTLDEFYVS 694 (930)
Q Consensus 677 -~~i~~l~~L~~L~~~~~~ 694 (930)
..+..|++|..|.++.+.
T Consensus 157 ~~al~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSLYDNK 175 (498)
T ss_pred HHHHHHhhhcchhcccchh
Confidence 335556666666655443
No 32
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.09 E-value=3.6e-09 Score=114.18 Aligned_cols=275 Identities=18% Similarity=0.140 Sum_probs=144.5
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.+|+|+++.++.+..++...... ......+.++|++|+|||+||+.+++. ....+ ..+..+....... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR-QEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCchh-HHHHH
Confidence 46999999999998888643221 234566889999999999999999883 32221 1222211111111 22222
Q ss_pred HHhcCCCC-CCccH----HHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChHHHhhhC-
Q 002362 250 EALDGHES-RLGEF----QSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKSVASMMG- 323 (930)
Q Consensus 250 ~~l~~~~~-~~~~~----~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~- 323 (930)
..+..... -..+. ......+...+.+.+..+|+|+..+.. .| ...+ .+.+-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~~~---~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RLDL---PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--ce---eecC---CCeEEEEecCCccccCHHHHh
Confidence 22221110 00000 112233444445555556666543321 11 1111 12455667777654333211
Q ss_pred -CcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHhhhcCCCCHHHHHHHHhccccc
Q 002362 324 -STNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLMRSKETEEEWRRILNSGLWK 402 (930)
Q Consensus 324 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~~ 402 (930)
....+++++++.++..+++.+.+...... .. .+....|++.|+|.|-.+..++..+ |..........
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~-~~---~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVE-IE---PEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCC-cC---HHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC
Confidence 13468999999999999999877543221 11 2346789999999997665554432 21110000000
Q ss_pred c-hhhhhhHHHHHHHhhhcCChhHHHHHh-HhcCCCCCcccChHHHHHHHHHhCCcCCCcchhHHHHHHHHHH-HHHHcc
Q 002362 403 V-EEIEKDILSSLLLSYNDLPSKVKKCFS-YCAIFPKDYNIEKDRLITLWMAQGYLDTEQDEEMESKGEEYFG-ILASRS 479 (930)
Q Consensus 403 ~-~~~~~~i~~~l~lsy~~L~~~~k~cf~-~~s~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~e~~~~~~~~-~L~~~~ 479 (930)
. .+.-......+...|..++.+.+..+. ....++.+ .+..+.+-... |- ....++..++ .|++.+
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~--------~~~~~~~~~e~~Li~~~ 284 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE--------DADTIEDVYEPYLLQIG 284 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC--------CcchHHHhhhHHHHHcC
Confidence 1 011112333356678888887776555 54666433 34433322211 11 1234566677 699999
Q ss_pred CCcc
Q 002362 480 FFQE 483 (930)
Q Consensus 480 l~~~ 483 (930)
|+..
T Consensus 285 li~~ 288 (305)
T TIGR00635 285 FLQR 288 (305)
T ss_pred Cccc
Confidence 9964
No 33
>PF05729 NACHT: NACHT domain
Probab=99.09 E-value=8.8e-10 Score=107.38 Aligned_cols=143 Identities=16% Similarity=0.228 Sum_probs=91.8
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhc----CCeEEEEEeCCCccHH---HHHHHHHHHhcCCCCCCccHHHHHHHHH
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRK----FDKILWVCVSETFEEF---RVAKAIVEALDGHESRLGEFQSLIKHIY 270 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 270 (930)
|++.|+|.+|+||||+++.++.+...... +...+|++........ .+...|..+...... .... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhHH---HHH
Confidence 58999999999999999999985333322 4467777765543332 344444444432211 1111 111
Q ss_pred H-HhcCceEEEEEeCccccCcc-------Chhh-hhhhhcc-CCCCcEEEEEcCChHH---HhhhCCcceEeCCCCChHH
Q 002362 271 E-SVAGMCFLLVLDDVWDGNYM-------KWEP-FFHCLKN-GLHRSKILVTTRKKSV---ASMMGSTNIISIKELTEEE 337 (930)
Q Consensus 271 ~-~l~~kr~LlVlDdv~~~~~~-------~~~~-l~~~l~~-~~~gs~iivTtr~~~v---~~~~~~~~~~~l~~L~~~~ 337 (930)
. ....++++||+|++++.... .+.. +...++. ..++.+++||+|.... .........+++.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 2 22588999999999764321 1223 3333333 3578999999998766 3334445689999999999
Q ss_pred HHHHHHHHH
Q 002362 338 CRLLFNKIA 346 (930)
Q Consensus 338 ~~~lf~~~~ 346 (930)
..+++++..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999997753
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.09 E-value=2.4e-11 Score=132.65 Aligned_cols=219 Identities=20% Similarity=0.117 Sum_probs=104.6
Q ss_pred cccccCCCCCeeeccCCccc-ccccccccCCc---ccEEeccCCCCC----cccccccccc-CCcceEeecCcccc----
Q 002362 606 RNIERLVHLRYLNLSNQSIR-KLPDTLCELYN---LQKLDISCCCKL----KELPQGIGKL-INMRHLLNYGTISL---- 672 (930)
Q Consensus 606 ~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~L~~---L~~L~l~~~~~~----~~lp~~i~~L-~~L~~L~l~~~~~~---- 672 (930)
..+..+.+|++|++++|.+. ..+..+..+.+ |++|++++|... ..++..+..+ ++|+.|++++|...
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 34444555555555555543 22222322322 555555555422 0122233334 45555555555321
Q ss_pred cccCCcCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEee
Q 002362 673 RYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFN 752 (930)
Q Consensus 673 ~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 752 (930)
..++..+..+++|++|++..+.........+...+..+++|+.|++.++...+. ........+..+++|+.|++++|
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~---~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE---GASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH---HHHHHHHHhcccCCCCEEecCCC
Confidence 122223344445555554433222100000111222333555555544432111 11122224556788999999888
Q ss_pred CCCCCCcCCCccchHHHhhcC-CCCCCcceEEEeeccCCC----CCCcccccccCccEEEeeCCCCCCC----CC-CCCC
Q 002362 753 KEEGDGQRRKNEDDQLLLEFL-QPPPNLRKLLIGSYRGKT----VFPPWMMSLTNLRSLDLDDCENCEK----LP-PLGK 822 (930)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~L~~~~~~~~----l~-~l~~ 822 (930)
.+... ....+...+ .+.+.|++|++++|.+.. .++..+..+++|+.|++++|.+... +. .+..
T Consensus 232 ~l~~~-------~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~ 304 (319)
T cd00116 232 NLTDA-------GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLE 304 (319)
T ss_pred cCchH-------HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhh
Confidence 76531 111122221 245789999999987752 1233344568899999999877643 22 1333
Q ss_pred C-CCcceeeeccC
Q 002362 823 L-PSLEKLSISFM 834 (930)
Q Consensus 823 l-~~L~~L~L~~~ 834 (930)
. +.|+.|++.++
T Consensus 305 ~~~~~~~~~~~~~ 317 (319)
T cd00116 305 PGNELESLWVKDD 317 (319)
T ss_pred cCCchhhcccCCC
Confidence 4 67888887653
No 35
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.95 E-value=1.9e-07 Score=106.75 Aligned_cols=300 Identities=14% Similarity=0.129 Sum_probs=167.7
Q ss_pred CCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHH---hcCC--eEEEEEeCCCccHHH
Q 002362 169 EEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVK---RKFD--KILWVCVSETFEEFR 243 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~--~~~wv~vs~~~~~~~ 243 (930)
++.+.||++++++|...|...-.+ .....++.|+|++|.|||+.++.|.....-. .... .+++|.+..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIkg-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQ-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhc-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 467899999999999998654321 2234678899999999999999998743211 1122 357777777778888
Q ss_pred HHHHHHHHhcCCCCC-CccHHHHHHHHHHHhc---CceEEEEEeCccccCccChhhhhhhhcc-CCCCcEEEE--EcCCh
Q 002362 244 VAKAIVEALDGHESR-LGEFQSLIKHIYESVA---GMCFLLVLDDVWDGNYMKWEPFFHCLKN-GLHRSKILV--TTRKK 316 (930)
Q Consensus 244 ~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~---~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiv--Ttr~~ 316 (930)
++..|.+++....+. .....+....+...+. +...+||||+++.-....-+.|...+.. ...+++|+| +|...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 999999998543322 2233445555555542 2245899999975322111223333322 224555444 33322
Q ss_pred H--------HHhhhCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHhhhcCCC-
Q 002362 317 S--------VASMMGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLMRSKE- 387 (930)
Q Consensus 317 ~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~l~~~~- 387 (930)
+ +...++ ...+...|.+.++-.+++..++-.....-.+..++-+|+.++...|-.-.||.++-.+...+.
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikeg 991 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRG 991 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC
Confidence 2 222222 234677999999999999998864322233445566666666666667777777766654321
Q ss_pred ---CHHHHHHHHhcccccchhhhhhHHHHHHHhhhcCChhHHHHHhHhcCCCC---CcccChHHHHHHH--HHh--C-Cc
Q 002362 388 ---TEEEWRRILNSGLWKVEEIEKDILSSLLLSYNDLPSKVKKCFSYCAIFPK---DYNIEKDRLITLW--MAQ--G-YL 456 (930)
Q Consensus 388 ---~~~~w~~~l~~~~~~~~~~~~~i~~~l~lsy~~L~~~~k~cf~~~s~fp~---~~~i~~~~Li~~w--~a~--g-~i 456 (930)
+.++-..+.+. -....+.-....||.|.|..+..+...-+ ...+.-..+.... +++ | .+
T Consensus 992 skVT~eHVrkAlee----------iE~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~i 1061 (1164)
T PTZ00112 992 QKIVPRDITEATNQ----------LFDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYI 1061 (1164)
T ss_pred CccCHHHHHHHHHH----------HHhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhc
Confidence 11111111110 01112233456789887765543332211 1234444444332 233 1 11
Q ss_pred CCCcchhHHHHHHHHHHHHHHccCCcc
Q 002362 457 DTEQDEEMESKGEEYFGILASRSFFQE 483 (930)
Q Consensus 457 ~~~~~~~~e~~~~~~~~~L~~~~l~~~ 483 (930)
.. ....+ ....|+.+|...+++-.
T Consensus 1062 Gv--~plTq-RV~d~L~eL~~LGIIl~ 1085 (1164)
T PTZ00112 1062 GM--CSNNE-LFKIMLDKLVKMGILLI 1085 (1164)
T ss_pred CC--CCcHH-HHHHHHHHHHhcCeEEe
Confidence 11 11122 55667778887777643
No 36
>PRK06893 DNA replication initiation factor; Validated
Probab=98.88 E-value=5.3e-08 Score=99.42 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=96.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGM 276 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (930)
.+.+.|+|++|+|||+|++.+++. .......+.|+.+... ..... .+.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~---------------------~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSP---------------------AVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhH---------------------HHHhhcc-c
Confidence 357899999999999999999994 4334455677776421 00000 1111222 2
Q ss_pred eEEEEEeCccccC-ccChhh-hhhhhccC-CCCcEEE-EEcCC---------hHHHhhhCCcceEeCCCCChHHHHHHHH
Q 002362 277 CFLLVLDDVWDGN-YMKWEP-FFHCLKNG-LHRSKIL-VTTRK---------KSVASMMGSTNIISIKELTEEECRLLFN 343 (930)
Q Consensus 277 r~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~ii-vTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 343 (930)
.-+||+||+|... ...|+. +...+... ..|..+| +|++. +.+.+.+.....++++++++++.+++++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 2489999998743 235653 44434332 2355554 45544 3566666777799999999999999999
Q ss_pred HHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHH
Q 002362 344 KIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIG 380 (930)
Q Consensus 344 ~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~ 380 (930)
+.++...-. .+ +++..-|++.+.|..-++..+-
T Consensus 172 ~~a~~~~l~-l~---~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 172 RNAYQRGIE-LS---DEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHcCCC-CC---HHHHHHHHHhccCCHHHHHHHH
Confidence 988744321 11 2346778888887766554443
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.76 E-value=4.2e-10 Score=113.95 Aligned_cols=93 Identities=22% Similarity=0.202 Sum_probs=53.9
Q ss_pred HHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCc----ccccccc-------cccCCcccEEecc
Q 002362 575 ERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQS----IRKLPDT-------LCELYNLQKLDIS 643 (930)
Q Consensus 575 ~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~----i~~lp~~-------i~~L~~L~~L~l~ 643 (930)
......+..+..|+|++|.... .....+.+.+.+.++||.-++++-. ..++|+. +-..++|++||||
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~--EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGT--EAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred HHHhcccCceEEEeccCCchhH--HHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 3346677888888898765321 1122344556677788888887632 2244443 3345577777777
Q ss_pred CCCCCcccccc----ccccCCcceEeecCc
Q 002362 644 CCCKLKELPQG----IGKLINMRHLLNYGT 669 (930)
Q Consensus 644 ~~~~~~~lp~~----i~~L~~L~~L~l~~~ 669 (930)
.|-.-..-+.. +.++..|+||++.+|
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence 77643333322 345566666666665
No 38
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.71 E-value=9.3e-08 Score=99.51 Aligned_cols=171 Identities=20% Similarity=0.280 Sum_probs=102.5
Q ss_pred cCCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHH
Q 002362 168 DEEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKA 247 (930)
Q Consensus 168 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 247 (930)
....++|....+.+.++ ...+.-..+||++|+||||||+.+.. .....| ..+|...+-.+-+++
T Consensus 28 GQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~ 91 (436)
T COG2256 28 GQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLRE 91 (436)
T ss_pred ChHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHH
Confidence 34455666566655554 34677788999999999999999987 333343 333333222222222
Q ss_pred HHHHhcCCCCCCccHHHHHHHHH-HHhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEE--EcCChHHH---hh
Q 002362 248 IVEALDGHESRLGEFQSLIKHIY-ESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILV--TTRKKSVA---SM 321 (930)
Q Consensus 248 i~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v~---~~ 321 (930)
|++ .-+ ....+++.+|++|.|..-+..+-+.+ ||.-..|.-|+| ||-++... ..
T Consensus 92 i~e-----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~AL 151 (436)
T COG2256 92 IIE-----------------EARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPAL 151 (436)
T ss_pred HHH-----------------HHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHH
Confidence 222 221 22358999999999987554333333 455556777776 66665322 22
Q ss_pred hCCcceEeCCCCChHHHHHHHHHHHcCCCC-ch-hhH-HHHHHHHHHHHHcCCchh
Q 002362 322 MGSTNIISIKELTEEECRLLFNKIAFSDRP-IE-ERE-KLEQIGRKIANKCKGLPL 374 (930)
Q Consensus 322 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~-~~~-~l~~~~~~i~~~c~glPL 374 (930)
.+-..++++++|+.+|-.+++.+.+..... .. ... --++....+++.++|---
T Consensus 152 lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 345789999999999999999884322111 11 000 112345667788888554
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.3e-09 Score=111.70 Aligned_cols=83 Identities=22% Similarity=0.161 Sum_probs=49.6
Q ss_pred CCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCC--CCCC
Q 002362 742 KNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCE--KLPP 819 (930)
Q Consensus 742 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~--~l~~ 819 (930)
++|+.|.|+.|.++. ..+...+..+|+|+.|.+.+|.+..........+..|+.|+|++|.+.. ..+.
T Consensus 197 ~~lK~L~l~~CGls~----------k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~ 266 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSW----------KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYK 266 (505)
T ss_pred hhhheEEeccCCCCH----------HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccc
Confidence 456666666665543 3355555567777777777774222122223356677777777776554 2355
Q ss_pred CCCCCCcceeeeccC
Q 002362 820 LGKLPSLEKLSISFM 834 (930)
Q Consensus 820 l~~l~~L~~L~L~~~ 834 (930)
.+.||.|..|+++.|
T Consensus 267 ~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSST 281 (505)
T ss_pred cccccchhhhhcccc
Confidence 777777777777644
No 40
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.69 E-value=3.2e-07 Score=94.27 Aligned_cols=170 Identities=17% Similarity=0.201 Sum_probs=101.2
Q ss_pred chhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcC
Q 002362 175 RVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDG 254 (930)
Q Consensus 175 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 254 (930)
....++.+..++.. .....+.|+|++|+|||+||+.+++. ........+++.++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~~------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------AD------ 81 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------hH------
Confidence 34466666666532 24568999999999999999999984 333344556666543211 00
Q ss_pred CCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCcc-Ch-hhhhhhhcc-CCCCcEEEEEcCChH---------HHhhh
Q 002362 255 HESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYM-KW-EPFFHCLKN-GLHRSKILVTTRKKS---------VASMM 322 (930)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~ 322 (930)
. .+...+.+. -+||+||++..... .| +.+...+.. ...+.+||+||+... +...+
T Consensus 82 --------~----~~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 82 --------P----EVLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------H----HHHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 0 111112222 38999999765432 23 335544433 123457888888532 22233
Q ss_pred CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHh
Q 002362 323 GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGS 381 (930)
Q Consensus 323 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~ 381 (930)
.....+++.++++++...++...+-.... ... .+..+.+++.+.|.|..+..+-.
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~---~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGL-QLP---DEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 33467999999999999999875432221 111 23356677788898887765543
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.69 E-value=9.8e-09 Score=115.39 Aligned_cols=107 Identities=34% Similarity=0.437 Sum_probs=90.5
Q ss_pred hhcCCcceEEEcCCcccccCCCCCcccCcccccCC-CCCeeeccCCcccccccccccCCcccEEeccCCCCCcccccccc
Q 002362 578 FRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLV-HLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIG 656 (930)
Q Consensus 578 ~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~ 656 (930)
...++.+..|++.+| .+.++|..++.+. +|++|++++|.+..+|..+..+++|+.|+++.|. +..+|...+
T Consensus 112 ~~~~~~l~~L~l~~n-------~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~ 183 (394)
T COG4886 112 LLELTNLTSLDLDNN-------NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLS 183 (394)
T ss_pred hhcccceeEEecCCc-------ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhh
Confidence 445578999999943 5677888888885 9999999999999999889999999999999998 889998888
Q ss_pred ccCCcceEeecCcccccccCCcCCCCCCCCcCCceEe
Q 002362 657 KLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYV 693 (930)
Q Consensus 657 ~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~ 693 (930)
.+++|+.|+++++ .+..+|..++.+..|++|.+..+
T Consensus 184 ~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 184 NLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCC
Confidence 9999999999998 67888887777777888876544
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.68 E-value=7.2e-10 Score=118.79 Aligned_cols=195 Identities=26% Similarity=0.293 Sum_probs=132.7
Q ss_pred CCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcccccccc
Q 002362 551 VKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPDT 630 (930)
Q Consensus 551 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~ 630 (930)
+..-...+++.|+... ++.-+..|-.|..|.|+. + .+..+|..+++|..|+||+|+.|.++.+|..
T Consensus 74 ltdt~~aDlsrNR~~e-------lp~~~~~f~~Le~liLy~---n----~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~ 139 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSE-------LPEEACAFVSLESLILYH---N----CIRTIPEAICNLEALTFLDLSSNQLSHLPDG 139 (722)
T ss_pred ccchhhhhcccccccc-------CchHHHHHHHHHHHHHHh---c----cceecchhhhhhhHHHHhhhccchhhcCChh
Confidence 3334455666665321 233355566677777773 3 5677888888888888888888888888888
Q ss_pred cccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCcccccccc
Q 002362 631 LCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESL 710 (930)
Q Consensus 631 i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L 710 (930)
+|.|+ |+.|.+++|+ +..+|..++.+..|.+|+.+.| .+..+|..++.+.+|+.|.+..+...
T Consensus 140 lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~-------------- 202 (722)
T KOG0532|consen 140 LCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLE-------------- 202 (722)
T ss_pred hhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhh--------------
Confidence 88776 8888888877 8888888888888888888877 56777877777777777764322211
Q ss_pred cCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCC
Q 002362 711 RSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGK 790 (930)
Q Consensus 711 ~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 790 (930)
.++. .+. .-.|..|++++|.+.. ++-.+..+..|++|.|.+|.+.
T Consensus 203 ---------------~lp~-------El~-~LpLi~lDfScNkis~------------iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 203 ---------------DLPE-------ELC-SLPLIRLDFSCNKISY------------LPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ---------------hCCH-------HHh-CCceeeeecccCceee------------cchhhhhhhhheeeeeccCCCC
Confidence 1111 122 2256778888887765 5666777888888888888877
Q ss_pred CCCCcccc---cccCccEEEeeCCC
Q 002362 791 TVFPPWMM---SLTNLRSLDLDDCE 812 (930)
Q Consensus 791 ~~~p~~~~---~l~~L~~L~L~~~~ 812 (930)
. -|..++ ...-.++|+..-|.
T Consensus 248 S-PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 248 S-PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred C-ChHHHHhccceeeeeeecchhcc
Confidence 6 554444 23345667777663
No 43
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.68 E-value=8.7e-07 Score=106.87 Aligned_cols=313 Identities=13% Similarity=0.122 Sum_probs=179.0
Q ss_pred eecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeC---CCc---cHHHHH
Q 002362 172 ICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVS---ETF---EEFRVA 245 (930)
Q Consensus 172 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs---~~~---~~~~~~ 245 (930)
++||+.+.+.+...+.....+ .-.++.+.|..|||||+|++.|.. .+.+.+...+--.+. .+. .....+
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g---~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~ 76 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKG---RGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQAF 76 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCC---CeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHHH
Confidence 689999999999999876643 556999999999999999999988 444442222221221 111 122334
Q ss_pred HHHHHHhcC-------------------CCC-----------------C-----CccHHH-----HHHHHHHHh-cCceE
Q 002362 246 KAIVEALDG-------------------HES-----------------R-----LGEFQS-----LIKHIYESV-AGMCF 278 (930)
Q Consensus 246 ~~i~~~l~~-------------------~~~-----------------~-----~~~~~~-----~~~~l~~~l-~~kr~ 278 (930)
++++.++.. ... . ....+. ....+.... +.++.
T Consensus 77 r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~pl 156 (849)
T COG3899 77 RDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPL 156 (849)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCe
Confidence 444443310 000 0 000111 122222333 45689
Q ss_pred EEEEeCccccCccChhhhhhhhccCCC----CcEEEEEcCChHH----HhhhCCcceEeCCCCChHHHHHHHHHHHcCCC
Q 002362 279 LLVLDDVWDGNYMKWEPFFHCLKNGLH----RSKILVTTRKKSV----ASMMGSTNIISIKELTEEECRLLFNKIAFSDR 350 (930)
Q Consensus 279 LlVlDdv~~~~~~~~~~l~~~l~~~~~----gs~iivTtr~~~v----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 350 (930)
++|+||+...+....+-+......... ...|..+...... ...-.....+.|.||+..+.-.+.........
T Consensus 157 Vi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~ 236 (849)
T COG3899 157 VIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK 236 (849)
T ss_pred EEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc
Confidence 999999966554443333322222210 1123333332221 12223356899999999999999988764322
Q ss_pred CchhhHHHHHHHHHHHHHcCCchhHHHHHHhhhcCC------CCHHHHHHHHhcccccchhhhhhHHHHHHHhhhcCChh
Q 002362 351 PIEEREKLEQIGRKIANKCKGLPLAAKIIGSLMRSK------ETEEEWRRILNSGLWKVEEIEKDILSSLLLSYNDLPSK 424 (930)
Q Consensus 351 ~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~lsy~~L~~~ 424 (930)
. ...+....|+++..|+|+.+..+-..+... .+...|..-..+ .......++ +...+..-.+.||..
T Consensus 237 ~-----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~~~-vv~~l~~rl~kL~~~ 309 (849)
T COG3899 237 L-----LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATTDA-VVEFLAARLQKLPGT 309 (849)
T ss_pred c-----ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhhHH-HHHHHHHHHhcCCHH
Confidence 2 123347889999999999999988888653 223333322111 111111222 556688899999999
Q ss_pred HHHHHhHhcCCCCCcccChHHHHHHHHHhCCcCCCcchhHHHHHHHHHHHHHHccCCcccccCCCC---cee-eEEecHH
Q 002362 425 VKKCFSYCAIFPKDYNIEKDRLITLWMAQGYLDTEQDEEMESKGEEYFGILASRSFFQEFTKSYDN---CIM-QCKMHDM 500 (930)
Q Consensus 425 ~k~cf~~~s~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~e~~~~~~~~~L~~~~l~~~~~~~~~~---~~~-~~~mh~l 500 (930)
.+...-..|++- -.|+.+.|-..|-. .....+...++.|....++...+....+ ... +--.|+.
T Consensus 310 t~~Vl~~AA~iG--~~F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~ 377 (849)
T COG3899 310 TREVLKAAACIG--NRFDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDR 377 (849)
T ss_pred HHHHHHHHHHhC--ccCCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHH
Confidence 999999999985 45666666666521 3345566666666666655432111111 111 1134888
Q ss_pred HHHHHHHh
Q 002362 501 VHDFGQFI 508 (930)
Q Consensus 501 v~~~a~~~ 508 (930)
+++.|-..
T Consensus 378 vqqaaY~~ 385 (849)
T COG3899 378 VQQAAYNL 385 (849)
T ss_pred HHHHHhcc
Confidence 87777544
No 44
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.68 E-value=7.7e-10 Score=118.58 Aligned_cols=182 Identities=25% Similarity=0.315 Sum_probs=128.1
Q ss_pred CCcccCcccccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcC
Q 002362 600 PLTRIPRNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGI 679 (930)
Q Consensus 600 ~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i 679 (930)
.+..+|..++.+..|..|.|..|.|..+|..+++|..|.+||++.|. ++.+|..++.| -|+.|.+++| .++.+|..|
T Consensus 86 R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~l-pLkvli~sNN-kl~~lp~~i 162 (722)
T KOG0532|consen 86 RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDL-PLKVLIVSNN-KLTSLPEEI 162 (722)
T ss_pred ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcC-cceeEEEecC-ccccCCccc
Confidence 45677888888888888888888888888888888888888888887 88888888776 4788877776 678888888
Q ss_pred CCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCc
Q 002362 680 GRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQ 759 (930)
Q Consensus 680 ~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~ 759 (930)
+.+..|..|+.+.|...+ .+. .+..+.+|+.|.+..|++..
T Consensus 163 g~~~tl~~ld~s~nei~s-----------------------------lps-------ql~~l~slr~l~vrRn~l~~--- 203 (722)
T KOG0532|consen 163 GLLPTLAHLDVSKNEIQS-----------------------------LPS-------QLGYLTSLRDLNVRRNHLED--- 203 (722)
T ss_pred ccchhHHHhhhhhhhhhh-----------------------------chH-------HhhhHHHHHHHHHhhhhhhh---
Confidence 877777777754433221 011 34444555666666665543
Q ss_pred CCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCC---CCCCCCCcceeeeccC
Q 002362 760 RRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLP---PLGKLPSLEKLSISFM 834 (930)
Q Consensus 760 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~---~l~~l~~L~~L~L~~~ 834 (930)
+++.+.. -.|.+|++++|.+.. +|..|..|+.|+.|-|.+|.+..... .-|...-.|+|+..-|
T Consensus 204 ---------lp~El~~-LpLi~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 204 ---------LPEELCS-LPLIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ---------CCHHHhC-CceeeeecccCceee-cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 4555553 347788888888877 88888888888888888887654211 1455556677777665
No 45
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.67 E-value=6.8e-08 Score=89.72 Aligned_cols=118 Identities=20% Similarity=0.178 Sum_probs=80.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHh---cCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKR---KFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYES 272 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 272 (930)
+.+++.|+|.+|+|||++++.+.++..... .-..++|+.+....+...+...|+.+++.......+.+++...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 457899999999999999999988522110 13467799998888999999999999988766656677777888888
Q ss_pred hcCc-eEEEEEeCcccc-CccChhhhhhhhccCCCCcEEEEEcCC
Q 002362 273 VAGM-CFLLVLDDVWDG-NYMKWEPFFHCLKNGLHRSKILVTTRK 315 (930)
Q Consensus 273 l~~k-r~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~ 315 (930)
+... ..+||+|++..- +...++.+.. +.+ ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 7544 469999999765 4333333433 223 556677777664
No 46
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.66 E-value=4.4e-07 Score=101.55 Aligned_cols=177 Identities=18% Similarity=0.230 Sum_probs=103.0
Q ss_pred CceecchhhHHH---HHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHH
Q 002362 170 EEICGRVDEKNE---LLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAK 246 (930)
Q Consensus 170 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 246 (930)
++++|++..+.. +..++.. .....+.++|++|+||||||+.+++. .... |+.++....-.+-.+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHH
Confidence 357888776554 6666642 24557888999999999999999873 2222 233322211111111
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHH-hcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEE--EcCChH--HH-h
Q 002362 247 AIVEALDGHESRLGEFQSLIKHIYES-VAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILV--TTRKKS--VA-S 320 (930)
Q Consensus 247 ~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~--v~-~ 320 (930)
.++ ...... ..+++.+|++|+++.......+.+...+.. |..++| ||.+.. +. .
T Consensus 79 ~ii-----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 79 EVI-----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHH-----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 222 122111 246788999999987654455555555543 444444 344432 11 1
Q ss_pred hhCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHH
Q 002362 321 MMGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIG 380 (930)
Q Consensus 321 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~ 380 (930)
.......+++.++++++.+.++.+.+....... ..--.+....|++.|+|.+..+..+.
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 123346899999999999999988653211000 01113446778899999987664443
No 47
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.58 E-value=1.7e-07 Score=93.07 Aligned_cols=77 Identities=16% Similarity=0.236 Sum_probs=42.9
Q ss_pred ceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCC-----ccHHHHH
Q 002362 171 EICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSET-----FEEFRVA 245 (930)
Q Consensus 171 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~ 245 (930)
.|+||+++.+++...|.. .. ....+.+.|+|.+|+|||+|.+.++.. ...+....+.+.+... .....++
T Consensus 1 ~fvgR~~e~~~l~~~l~~-~~--~~~~~~~ll~G~~G~GKT~ll~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDA-AQ--SGSPRNLLLTGESGSGKTSLLRALLDR--LAERGGYVISINCDDSERNPYSPFRSAL 75 (185)
T ss_dssp --TT-HHHHHHHHHTTGG-TS--S-----EEE-B-TTSSHHHHHHHHHHH--HHHHT--EEEEEEETTTS-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH-HH--cCCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCEEEEEEEeccccchhhHHHHHH
Confidence 489999999999999952 22 346799999999999999999999884 4444222333344333 1125555
Q ss_pred HHHHHHh
Q 002362 246 KAIVEAL 252 (930)
Q Consensus 246 ~~i~~~l 252 (930)
++++.++
T Consensus 76 ~~l~~~~ 82 (185)
T PF13191_consen 76 RQLIDQL 82 (185)
T ss_dssp HHHS---
T ss_pred HHHHHHh
Confidence 5555554
No 48
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=1.8e-07 Score=105.64 Aligned_cols=204 Identities=19% Similarity=0.196 Sum_probs=117.4
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.+++|.+...+.+..++... .-...+.++|++|+||||+|+.+++...-.+.+...+|.|.+...- .......+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~-----~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i-~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQG-----RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAV-RRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHH-hcCCCCce
Confidence 46899999888888888642 2345679999999999999999987432222233344443221000 00000000
Q ss_pred HHhcCC-CCCCccHHHHHHHHHH-HhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcC-ChHHHhhh-CCc
Q 002362 250 EALDGH-ESRLGEFQSLIKHIYE-SVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTR-KKSVASMM-GST 325 (930)
Q Consensus 250 ~~l~~~-~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~~-~~~ 325 (930)
..+... .....++.++...+.. -..+++-++|+|+++......+..+...+........+|++|. ...+...+ ...
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 000000 0111112222222221 1235566999999987766667778777776555556555554 33433322 235
Q ss_pred ceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHH-HHHHhhh
Q 002362 326 NIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAA-KIIGSLM 383 (930)
Q Consensus 326 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai-~~~~~~l 383 (930)
..+++.++++++...++.+.+-..+.... .+....|++.++|.+--+ ..+-.++
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~i~----~~Al~~ia~~s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGREAE----PEALQLVARLADGAMRDAESLLERLL 222 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 68999999999999999887654332111 234677999999988544 3333433
No 49
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=5.8e-06 Score=89.59 Aligned_cols=210 Identities=19% Similarity=0.210 Sum_probs=136.8
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCC--eEEEEEeCCCccHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFD--KILWVCVSETFEEFRVAKA 247 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~ 247 (930)
+.+.+|+++++++...|...-.+ ....-+.|+|..|+|||+.++.|+. +++.... .+++|.+-...+...++..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~--~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRG--ERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcC--CCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHH
Confidence 44899999999999988765442 2333499999999999999999998 4444332 2799999999999999999
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHhc--CceEEEEEeCccccCccChhhhhhhhccCC-CCcE--EEEEcCChHHHhhh
Q 002362 248 IVEALDGHESRLGEFQSLIKHIYESVA--GMCFLLVLDDVWDGNYMKWEPFFHCLKNGL-HRSK--ILVTTRKKSVASMM 322 (930)
Q Consensus 248 i~~~l~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-~gs~--iivTtr~~~v~~~~ 322 (930)
|+++++..........+....+.+.+. ++.+++|||+++.-....-+.+...+.... .+++ ||..+.+..+...+
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 999997544444556667777777764 688999999997643221134444444332 2454 34444444433332
Q ss_pred CC-------cceEeCCCCChHHHHHHHHHHHcCCC--CchhhHHHHHHHHHHHHHcCCchhHHHHHHhhh
Q 002362 323 GS-------TNIISIKELTEEECRLLFNKIAFSDR--PIEEREKLEQIGRKIANKCKGLPLAAKIIGSLM 383 (930)
Q Consensus 323 ~~-------~~~~~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~l 383 (930)
.+ ...+...|-+.+|-..++..++-..- ..-....++-++...++..|-.-.|+..+-.+.
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~ 242 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAG 242 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 21 22378899999999999988764221 112233444445544454445556665554433
No 50
>PRK04195 replication factor C large subunit; Provisional
Probab=98.56 E-value=6.9e-06 Score=93.90 Aligned_cols=247 Identities=15% Similarity=0.143 Sum_probs=138.4
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.+++|.++.++.+.+|+..... +...+.+.|+|++|+||||+|+.++++. .|+ ++-+.+++..+.. ....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~~-~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTAD-VIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccHH-HHHHHH
Confidence 4699999999999999875432 2236889999999999999999998842 132 3334444433222 222332
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHhc-CceEEEEEeCccccCc----cChhhhhhhhccCCCCcEEEEEcCCh-HHHh-hh
Q 002362 250 EALDGHESRLGEFQSLIKHIYESVA-GMCFLLVLDDVWDGNY----MKWEPFFHCLKNGLHRSKILVTTRKK-SVAS-MM 322 (930)
Q Consensus 250 ~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~-~~ 322 (930)
....... .+. .++-+||+|+++.... ..+..+...+... +..||+|+... .... .+
T Consensus 86 ~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 86 GEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccchhhH
Confidence 2221110 111 3567999999976432 2244555555432 33466665432 2111 11
Q ss_pred -CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHhhhcCC-C--CHHHHHHHHhc
Q 002362 323 -GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLMRSK-E--TEEEWRRILNS 398 (930)
Q Consensus 323 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~l~~~-~--~~~~w~~~l~~ 398 (930)
.....+++.+++.++....+.+.+........ .++...|++.++|-.-.+......+... . +.+.-..+...
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~~ 224 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGRR 224 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhcC
Confidence 23568999999999999998887654332222 2346788899999776554433333322 1 23333333211
Q ss_pred ccccchhhhhhHHHHHHHhhh-cCChhHHHHHhHhcCCCCCcccChHHHHHHHHHhCCcCCC
Q 002362 399 GLWKVEEIEKDILSSLLLSYN-DLPSKVKKCFSYCAIFPKDYNIEKDRLITLWMAQGYLDTE 459 (930)
Q Consensus 399 ~~~~~~~~~~~i~~~l~lsy~-~L~~~~k~cf~~~s~fp~~~~i~~~~Li~~w~a~g~i~~~ 459 (930)
+.+..++.++..-+. .-+......+.. ..++. ..+-.|+.|.+....
T Consensus 225 ------d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~~ 272 (482)
T PRK04195 225 ------DREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKEY 272 (482)
T ss_pred ------CCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhcccccc
Confidence 112345666654443 222233332221 12233 356789999997653
No 51
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.56 E-value=1.9e-08 Score=99.39 Aligned_cols=105 Identities=24% Similarity=0.232 Sum_probs=79.4
Q ss_pred cccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEee
Q 002362 707 LESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGS 786 (930)
Q Consensus 707 l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 786 (930)
+...+.|+.++++++...+.-. ++.-.+.++.|+++.|.+.. ...+..+++|+.|++++
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDE--------SvKL~Pkir~L~lS~N~i~~-------------v~nLa~L~~L~~LDLS~ 338 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDE--------SVKLAPKLRRLILSQNRIRT-------------VQNLAELPQLQLLDLSG 338 (490)
T ss_pred cchHhhhhhccccccchhhhhh--------hhhhccceeEEeccccceee-------------ehhhhhcccceEeeccc
Confidence 3344567777777765533211 34446889999999988764 33477788999999999
Q ss_pred ccCCCCCCcccccccCccEEEeeCCCCCCCCCCCCCCCCcceeeeccC
Q 002362 787 YRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPPLGKLPSLEKLSISFM 834 (930)
Q Consensus 787 ~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~ 834 (930)
|.++. +..|-..+.|++.|.|+.| ..+++..++.|-+|.+|+++++
T Consensus 339 N~Ls~-~~Gwh~KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 339 NLLAE-CVGWHLKLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSSN 384 (490)
T ss_pred chhHh-hhhhHhhhcCEeeeehhhh-hHhhhhhhHhhhhheecccccc
Confidence 98887 7788778899999999998 4567888899999999999865
No 52
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=2e-06 Score=94.48 Aligned_cols=190 Identities=16% Similarity=0.196 Sum_probs=109.5
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.+++|.+..++.+...+... .-...+.++|+.|+||||+|+.+++...-..... ......-....++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 46899999999998888642 2345679999999999999999987311000000 00000000111111
Q ss_pred HHhc-----CCCCCCccHHHHHHHHHHHh-----cCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCCh-HH
Q 002362 250 EALD-----GHESRLGEFQSLIKHIYESV-----AGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKK-SV 318 (930)
Q Consensus 250 ~~l~-----~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v 318 (930)
.... .........++.. .+.+.+ .+++-++|+|++.......++.+...+.......++|++|.+. .+
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir-~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l 162 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMR-EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKI 162 (363)
T ss_pred cCCCCceEEecccccCCHHHHH-HHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhh
Confidence 1000 0000001122211 111211 2445599999998776556777777777666667777766543 33
Q ss_pred Hhhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHH
Q 002362 319 ASMM-GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAA 376 (930)
Q Consensus 319 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai 376 (930)
...+ +....+++.+++.++..+.+.+.+...+..-. .+.+..|++.++|.|-.+
T Consensus 163 ~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~----~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 163 PKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD----EYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 3222 23568999999999999988876643322111 233677888999988643
No 53
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=1e-06 Score=94.89 Aligned_cols=179 Identities=14% Similarity=0.160 Sum_probs=116.9
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchH----HHHhcCCeEEEEEe-CCCccHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHE----EVKRKFDKILWVCV-SETFEEFRV 244 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~v-s~~~~~~~~ 244 (930)
.+++|.+..++.+...+.. +.-.....++|+.|+||||+|+.++..- ....|.|...|... +....+.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~-----~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIK-----NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHc-----CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 3578988889999998853 2345677899999999999999988731 12345565555442 22222222
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChHHH-hh-h
Q 002362 245 AKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKSVA-SM-M 322 (930)
Q Consensus 245 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~-~ 322 (930)
.+++.+.+... -..+++-++|+|+++..+...+..+...+.....++.+|++|.+.+.. .. .
T Consensus 78 ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 22222222111 122455578888887777778889999998888889988888655322 21 2
Q ss_pred CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHH
Q 002362 323 GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKI 378 (930)
Q Consensus 323 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~ 378 (930)
.....+++.++++++....+.+...+ .. . +.+..++..++|.|..+..
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~-~~---~----~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND-IK---E----EEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC-CC---H----HHHHHHHHHcCCCHHHHHH
Confidence 23578999999999998888665321 11 1 1256788899998875543
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.54 E-value=3.6e-09 Score=109.60 Aligned_cols=306 Identities=16% Similarity=0.084 Sum_probs=162.8
Q ss_pred CcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCc-cc--ccccccccCCcccEEeccCCCCCcccc--cccc
Q 002362 582 TSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQS-IR--KLPDTLCELYNLQKLDISCCCKLKELP--QGIG 656 (930)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~-i~--~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~i~ 656 (930)
..||.|.+.+|... ....+-..-.+++++..|++.+|. |+ .+-.--..+++|++|++..|..+...- .-..
T Consensus 138 g~lk~LSlrG~r~v----~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAV----GDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred cccccccccccccC----CcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 36899999987655 445555555677888888888886 33 112222468899999999987654321 1235
Q ss_pred ccCCcceEeecCcccccc--cCCcCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhh
Q 002362 657 KLINMRHLLNYGTISLRY--MPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAK 734 (930)
Q Consensus 657 ~L~~L~~L~l~~~~~~~~--~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~ 734 (930)
.+++|.+|++++|+.+.. +-.-.....+|+.+....+...+. ..+...-.....+..+++..+.. +.+.. .
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~---lTD~~--~ 286 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQ---LTDED--L 286 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhcc---ccchH--H
Confidence 678999999999865443 111122333444443332211110 00000001111122222222211 11111 0
Q ss_pred hccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhc-CCCCCCcceEEEeeccCCCCC-Ccccc-cccCccEEEeeCC
Q 002362 735 RLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEF-LQPPPNLRKLLIGSYRGKTVF-PPWMM-SLTNLRSLDLDDC 811 (930)
Q Consensus 735 ~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~-p~~~~-~l~~L~~L~L~~~ 811 (930)
...-..+..|+.|+.+.+...+ +.++.. -..+++|+.|.++++...... -..++ +.+.|+.+++..|
T Consensus 287 ~~i~~~c~~lq~l~~s~~t~~~----------d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 287 WLIACGCHALQVLCYSSCTDIT----------DEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred HHHhhhhhHhhhhcccCCCCCc----------hHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence 0011234556666655443222 122333 234567777777766521100 01111 5667777777766
Q ss_pred CCCCC--CCC-CCCCCCcceeeeccCcCceEeCCccccCcccccCccccceeeccccccccceeeeccCCccCC-CCCCC
Q 002362 812 ENCEK--LPP-LGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWIIMPRLSSLTFDSCPKLKA-LPDHF 887 (930)
Q Consensus 812 ~~~~~--l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~lp~L~~L~l~~c~~L~~-lp~~l 887 (930)
....+ +.. -.++|.|+.|.|+.|..+++.+... |.-..+.+..|+.|++.+||.+.+ .-+.+
T Consensus 357 ~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~--------------l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l 422 (483)
T KOG4341|consen 357 GLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRH--------------LSSSSCSLEGLEVLELDNCPLITDATLEHL 422 (483)
T ss_pred ceehhhhHhhhccCCchhccCChhhhhhhhhhhhhh--------------hhhccccccccceeeecCCCCchHHHHHHH
Confidence 54332 222 3356677777777665554332111 111112577899999999998764 22456
Q ss_pred CCCCCccEEEEecCchhhHHhhcCCCCCCcccccccCccccC
Q 002362 888 HQTTTLKEFNIGWNCGLLEKRYRKGEGEDWHKISHIPNLEIG 929 (930)
Q Consensus 888 ~~l~~L~~L~l~~nc~~l~~~~~~~~~~~~~~i~hip~~~~~ 929 (930)
.++++|+.+++.+ |......-.+ +-..|+|++.++
T Consensus 423 ~~c~~Leri~l~~-~q~vtk~~i~------~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 423 SICRNLERIELID-CQDVTKEAIS------RFATHLPNIKVH 457 (483)
T ss_pred hhCcccceeeeec-hhhhhhhhhH------HHHhhCccceeh
Confidence 7789999999999 8886654333 246788887764
No 55
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=1.3e-06 Score=101.78 Aligned_cols=183 Identities=18% Similarity=0.234 Sum_probs=112.7
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhc-------------------CCeE
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRK-------------------FDKI 230 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 230 (930)
.++||.+..++.+.+++... .-...+.++|+.|+||||+|+.+++...-... |.-+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~-----rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ-----RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 46899999999998888632 23455689999999999999999873110000 1111
Q ss_pred EEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEE
Q 002362 231 LWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYE-SVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKI 309 (930)
Q Consensus 231 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 309 (930)
+++...... ...++.++...+.. ...+++-++|||++.......++.++..+-......++
T Consensus 91 iEidAas~~------------------kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASRT------------------KVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEecccccc------------------CHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 112111001 11112222222211 12466779999999887777777777777665556666
Q ss_pred EEEcC-ChHHHhh-hCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHH
Q 002362 310 LVTTR-KKSVASM-MGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKII 379 (930)
Q Consensus 310 ivTtr-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~ 379 (930)
|++|. ...+... ......|++++|+.++..+++.+.+-....... .+....|++.++|.|--+..+
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~e----deAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFE----AEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 65554 4444322 233578999999999999999886643221111 234677999999988644433
No 56
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=8e-06 Score=93.50 Aligned_cols=196 Identities=15% Similarity=0.166 Sum_probs=114.3
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.++||.+..++.|.+++... .-...+.++|..|+||||+|+.+.+...-...++ +..+..-.....|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHh
Confidence 46899999999999988632 2345667999999999999998876311110000 00111111111111
Q ss_pred HH-----hcCCCCCCccHHHHHHHHHHH----hcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCCh-HHH
Q 002362 250 EA-----LDGHESRLGEFQSLIKHIYES----VAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKK-SVA 319 (930)
Q Consensus 250 ~~-----l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~ 319 (930)
.. +.........+++....+... ..++.-++|||+++..+...|..++..+-......++|+||++. .+.
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 10 000000111122222222211 12445589999998877677888887776666677877777654 332
Q ss_pred hh-hCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCch-hHHHHHHh
Q 002362 320 SM-MGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLP-LAAKIIGS 381 (930)
Q Consensus 320 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glP-Lai~~~~~ 381 (930)
.. .+-...+.+++++.++..+.+.+.+.......+ .+....|++.++|.. -|+..+-.
T Consensus 164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id----~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE----PQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred chhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 22 233678999999999999999887643322111 234677889998865 45554333
No 57
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=1.7e-06 Score=97.54 Aligned_cols=199 Identities=15% Similarity=0.162 Sum_probs=113.6
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.++||.+..++.|.+.+... .-...+.++|..|+||||+|+.+.+...-... +..--+ .+..+........|.
T Consensus 16 ddVIGQe~vv~~L~~al~~g-----RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~-~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQ-----RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGI-TAQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccC-CCCCCcccHHHHHHH
Confidence 46899999999999998642 23456789999999999999988763110000 000000 000010011111111
Q ss_pred HH-----hcCCCCCCccHHHHHHHHHHH----hcCceEEEEEeCccccCccChhhhhhhhccCCCCcEE-EEEcCChHHH
Q 002362 250 EA-----LDGHESRLGEFQSLIKHIYES----VAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKI-LVTTRKKSVA 319 (930)
Q Consensus 250 ~~-----l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i-ivTtr~~~v~ 319 (930)
.. +.........+++..+.+... ..++.-++|+|+++..+...++.++..+-....+.++ ++||....+.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 00 000000111223322222221 2455669999999987777777777777665555664 4555555554
Q ss_pred hhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHH
Q 002362 320 SMM-GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKII 379 (930)
Q Consensus 320 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~ 379 (930)
..+ +-...+.++.++.++..+.+.+.+........ .+....|++.++|.|..+..+
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d----~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE----VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 333 33678999999999999998876643222111 223577899999998755443
No 58
>PRK08727 hypothetical protein; Validated
Probab=98.50 E-value=4e-06 Score=85.83 Aligned_cols=149 Identities=15% Similarity=0.099 Sum_probs=90.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGM 276 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (930)
...+.|+|..|+|||.|++.+++. .......++|+++.+ ....+.+ ..+.+ .+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~~------------------~~~~l-~~ 93 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLRD------------------ALEAL-EG 93 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHHH------------------HHHHH-hc
Confidence 346999999999999999999884 444444667776432 1111111 11112 12
Q ss_pred eEEEEEeCccccC-ccChhh-hhhhhcc-CCCCcEEEEEcCCh---------HHHhhhCCcceEeCCCCChHHHHHHHHH
Q 002362 277 CFLLVLDDVWDGN-YMKWEP-FFHCLKN-GLHRSKILVTTRKK---------SVASMMGSTNIISIKELTEEECRLLFNK 344 (930)
Q Consensus 277 r~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 344 (930)
.-+||+||+.... ...|.. +...+.. ...|..||+||+.. +..+.+.....+++++++.++..+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 2489999996432 123433 3332222 12456799999853 2333444566899999999999999998
Q ss_pred HHcCCCCchhhHHHHHHHHHHHHHcCCchhHH
Q 002362 345 IAFSDRPIEEREKLEQIGRKIANKCKGLPLAA 376 (930)
Q Consensus 345 ~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai 376 (930)
++....-.-+ +++..-|++.+.|-.-.+
T Consensus 174 ~a~~~~l~l~----~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRGLALD----EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcCCCCC----HHHHHHHHHhCCCCHHHH
Confidence 7754322111 234667888887765544
No 59
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.49 E-value=8.2e-07 Score=84.42 Aligned_cols=125 Identities=18% Similarity=0.133 Sum_probs=74.3
Q ss_pred ecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHh
Q 002362 173 CGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEAL 252 (930)
Q Consensus 173 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 252 (930)
+|++..++.+...+... ..+.+.|+|.+|+||||+++.+++. ....-..++++.+++..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888889998888632 3468999999999999999999984 32223456677665543322222111100
Q ss_pred cCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccC------CCCcEEEEEcCChH
Q 002362 253 DGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNG------LHRSKILVTTRKKS 317 (930)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~iivTtr~~~ 317 (930)
............++.++|+||++.........+...+... ..+..||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0111112223456789999999854222223333333332 35778888888653
No 60
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.49 E-value=1.9e-06 Score=84.07 Aligned_cols=181 Identities=20% Similarity=0.209 Sum_probs=93.6
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
++|||.+.-++.+.-++..... .++.+.-+.+||++|+||||||+.+++. ....|. +++...-....++ ..++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~i~k~~dl-~~il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPAIEKAGDL-AAIL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC--SCHHH-HHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchhhhhHHHH-HHHH
Confidence 5799999888776555542211 1346788999999999999999999883 333332 2222110011111 1111
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccC--------CCC-----------cEEE
Q 002362 250 EALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNG--------LHR-----------SKIL 310 (930)
Q Consensus 250 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~--------~~g-----------s~ii 310 (930)
.. + +++-+|++|++..-+...-+.+..++-++ +++ +-|=
T Consensus 97 ~~---------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 97 TN---------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp HT------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred Hh---------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 11 2 23346777888664433333344333222 111 2344
Q ss_pred EEcCChHHHhhhCC--cceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHhhh
Q 002362 311 VTTRKKSVASMMGS--TNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLM 383 (930)
Q Consensus 311 vTtr~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~l 383 (930)
.|||...+...+.. .-..+++..+.+|-.++..+.+..-...- -++.+.+|+++|.|-|--+.-+-+..
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i----~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEI----DEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-----HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCc----CHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 58887554443332 22458999999999999988664433221 23458899999999997655444333
No 61
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=2.4e-06 Score=96.64 Aligned_cols=193 Identities=17% Similarity=0.157 Sum_probs=113.4
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.+++|.+...+.+..++... .-...+.++|+.|+||||+|+.+++. + .|.-|+.. ..+..-...+.|.
T Consensus 15 ddVIGQe~vv~~L~~aI~~g-----rl~HAyLF~GPpGvGKTTlAriLAK~--L----nC~~~~~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG-----RLHHAYLFTGTRGVGKTTIARILAKC--L----NCETGVTS-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHH--h----CCCcCCCC-CCCccCHHHHHHh
Confidence 46899999999999998642 23567899999999999999988763 1 11111110 0011111111111
Q ss_pred HHhc-----CCCCCCccHHHHHHHHHH----HhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCCh-HHH
Q 002362 250 EALD-----GHESRLGEFQSLIKHIYE----SVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKK-SVA 319 (930)
Q Consensus 250 ~~l~-----~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~ 319 (930)
..-. .........++....+.. ...+++-++|+|++...+...+..+...+-....+.++|++|.+. .+.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 0000 000001122222222211 123566699999998876666777777777665667777766653 232
Q ss_pred hh-hCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHH
Q 002362 320 SM-MGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKI 378 (930)
Q Consensus 320 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~ 378 (930)
.. ......+++++++.++....+.+.+-..+.... .+....|++.++|.+..+..
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 22 234578999999999999999887644332222 22367788899997754433
No 62
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=3.3e-06 Score=95.69 Aligned_cols=187 Identities=18% Similarity=0.222 Sum_probs=114.6
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHH-------------------HhcCCeE
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEV-------------------KRKFDKI 230 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~ 230 (930)
.+++|.+..++.+...+... .-...+.++|+.|+||||+|+.+++...- ...|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 46899999999999888642 23456789999999999999999862110 0012222
Q ss_pred EEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEE
Q 002362 231 LWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYE-SVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKI 309 (930)
Q Consensus 231 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 309 (930)
+++.......+. +..++...+.. -..+++-++|+|++...+...++.+...+-.....+.+
T Consensus 91 ieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 233221111111 22222222221 12456669999999877666777788887776566665
Q ss_pred E-EEcCChHHHhh-hCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCch-hHHHHHHhhh
Q 002362 310 L-VTTRKKSVASM-MGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLP-LAAKIIGSLM 383 (930)
Q Consensus 310 i-vTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glP-Lai~~~~~~l 383 (930)
| +||....+... ......+++++++.++....+.+.+-..+.... ......|++.++|.+ -|+..+-.++
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e----~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD----EQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5 55554444433 233678999999999988888775533221111 223567889999966 4555554433
No 63
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=4e-06 Score=94.37 Aligned_cols=194 Identities=15% Similarity=0.136 Sum_probs=113.1
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCe-EEEEEeCCCccHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDK-ILWVCVSETFEEFRVAKAI 248 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i 248 (930)
.+++|.+..++.+...+... .-..-+.++|+.|+||||+|+.+++...-...... .-+..+... .....|
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 46899999999888877532 23467899999999999999999873211100000 000000000 000111
Q ss_pred HHHhc-----CCCCCCccHHHHHHHHHH----HhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEE-EEcCChHH
Q 002362 249 VEALD-----GHESRLGEFQSLIKHIYE----SVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKIL-VTTRKKSV 318 (930)
Q Consensus 249 ~~~l~-----~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~v 318 (930)
..... .........+++...+.. -..+++-++|+|+++.-....|..+...+......+.+| +||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 10000 000011122222222211 124566799999999877677888888887766666655 45555555
Q ss_pred Hhhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHH
Q 002362 319 ASMM-GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAA 376 (930)
Q Consensus 319 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai 376 (930)
...+ .....+++.+++.++....+.+.+...+.... .+....|++.++|.+--+
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 4433 33568999999999999999988754332212 223566888999977543
No 64
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.47 E-value=2.4e-06 Score=93.89 Aligned_cols=197 Identities=13% Similarity=0.109 Sum_probs=108.4
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHh-cCC-eEEEEEeCCCccH--HHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKR-KFD-KILWVCVSETFEE--FRVA 245 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~vs~~~~~--~~~~ 245 (930)
++++|++..++.+..++.. +..+.+.++|++|+||||+|+.+.+. ... .+. ..+.+++++-.+. ..+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~GtGKT~la~~~~~~--l~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS------PNLPHLLVQGPPGSGKTAAVRALARE--LYGDPWENNFTEFNVADFFDQGKKYLV 86 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcccccceEEechhhhhhcchhhhh
Confidence 4689999999999888753 23346789999999999999999873 222 222 2344444331100 0000
Q ss_pred H--HHHHHhcCC-CCCCccHHHHHHHHH---HHh--cCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCCh-
Q 002362 246 K--AIVEALDGH-ESRLGEFQSLIKHIY---ESV--AGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKK- 316 (930)
Q Consensus 246 ~--~i~~~l~~~-~~~~~~~~~~~~~l~---~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~- 316 (930)
. .....++.. .......+.....+. ... .+.+-+||+||+..........+...+......+++|+||...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 87 EDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166 (337)
T ss_pred cCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChh
Confidence 0 000000000 000011111111111 111 2344589999997654333445655555444557787777543
Q ss_pred HHHhhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHH
Q 002362 317 SVASMM-GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKI 378 (930)
Q Consensus 317 ~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~ 378 (930)
.+...+ .....+++.+++.++...++.+.+......-. .+....+++.++|.+-.+..
T Consensus 167 ~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~----~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD----DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 222222 22457899999999999999887643332111 23467788888887655433
No 65
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.46 E-value=3.6e-06 Score=98.14 Aligned_cols=172 Identities=20% Similarity=0.199 Sum_probs=108.3
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcC---CeEEEEEeCCC---ccHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKF---DKILWVCVSET---FEEFR 243 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~---~~~~~ 243 (930)
++++|++..+..+...+... ....+.|+|++|+||||||+.+++.......+ ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 36899999999988877422 34579999999999999999998854333333 12345555321 12222
Q ss_pred HHHHH---------------HHHhcCCC----------------CCCccH-HHHHHHHHHHhcCceEEEEEeCccccCcc
Q 002362 244 VAKAI---------------VEALDGHE----------------SRLGEF-QSLIKHIYESVAGMCFLLVLDDVWDGNYM 291 (930)
Q Consensus 244 ~~~~i---------------~~~l~~~~----------------~~~~~~-~~~~~~l~~~l~~kr~LlVlDdv~~~~~~ 291 (930)
+...+ +...+... .+...+ ...+..+.+.+..+++.++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 21111 11111000 001111 23567788888899999998888877777
Q ss_pred ChhhhhhhhccCCCCcEEEE--EcCChHH-Hhhh-CCcceEeCCCCChHHHHHHHHHHHc
Q 002362 292 KWEPFFHCLKNGLHRSKILV--TTRKKSV-ASMM-GSTNIISIKELTEEECRLLFNKIAF 347 (930)
Q Consensus 292 ~~~~l~~~l~~~~~gs~iiv--Ttr~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~ 347 (930)
.|+.+...+..+.+...|++ ||++... ...+ .....+.+.+++.+|.++++.+.+-
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 78888877777666555665 5664321 1111 2234678999999999999998664
No 66
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.45 E-value=1.1e-07 Score=106.96 Aligned_cols=187 Identities=29% Similarity=0.319 Sum_probs=121.6
Q ss_pred cCcccccCCCCCeeeccCCcccccccccccCC-cccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCC
Q 002362 604 IPRNIERLVHLRYLNLSNQSIRKLPDTLCELY-NLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRL 682 (930)
Q Consensus 604 lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~-~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l 682 (930)
.+..+..+..++.|++.++.++.+|.....+. +|+.|++++|. +..+|..++.+++|+.|++++| .+..+|...+.+
T Consensus 108 ~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~ 185 (394)
T COG4886 108 NISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNL 185 (394)
T ss_pred CchhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc-hhhhhhhhhhhh
Confidence 34556667889999999999999999888885 99999999998 8888888999999999999998 667888877788
Q ss_pred CCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCC
Q 002362 683 TSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRK 762 (930)
Q Consensus 683 ~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~ 762 (930)
++|+.|++..+.... ++..+..+..|+.|.+..+....... .+..+.++..|.+..|.+..
T Consensus 186 ~~L~~L~ls~N~i~~-----l~~~~~~~~~L~~l~~~~N~~~~~~~--------~~~~~~~l~~l~l~~n~~~~------ 246 (394)
T COG4886 186 SNLNNLDLSGNKISD-----LPPEIELLSALEELDLSNNSIIELLS--------SLSNLKNLSGLELSNNKLED------ 246 (394)
T ss_pred hhhhheeccCCcccc-----CchhhhhhhhhhhhhhcCCcceecch--------hhhhcccccccccCCceeee------
Confidence 888888866554332 12222233335555554443221111 23344455555544444322
Q ss_pred ccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCC
Q 002362 763 NEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP 819 (930)
Q Consensus 763 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~ 819 (930)
++..+..++++++|++++|.+.. ++. ++.+.+|+.|+++++.....++.
T Consensus 247 ------~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 247 ------LPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ------ccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchh
Confidence 23344455556666666666655 444 55566666666666655544443
No 67
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.45 E-value=1.4e-07 Score=90.23 Aligned_cols=129 Identities=26% Similarity=0.294 Sum_probs=48.8
Q ss_pred CCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccccccc
Q 002362 550 GVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPD 629 (930)
Q Consensus 550 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~ 629 (930)
+..++|.|.+.++.+... ..+-..+.+|++|+|++|. +..++ .+..|++|+.|++++|.|+.++.
T Consensus 17 n~~~~~~L~L~~n~I~~I-------e~L~~~l~~L~~L~Ls~N~-------I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI-------ENLGATLDKLEVLDLSNNQ-------ITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS---------S--T-T----TT--EEE--SS---S-CH
T ss_pred cccccccccccccccccc-------cchhhhhcCCCEEECCCCC-------Ccccc-CccChhhhhhcccCCCCCCcccc
Confidence 455678888888865322 1211246788999999654 44443 46678899999999999988866
Q ss_pred cc-ccCCcccEEeccCCCCCcccc--ccccccCCcceEeecCcccccccCC----cCCCCCCCCcCCceEeCC
Q 002362 630 TL-CELYNLQKLDISCCCKLKELP--QGIGKLINMRHLLNYGTISLRYMPV----GIGRLTSLRTLDEFYVSG 695 (930)
Q Consensus 630 ~i-~~L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~~~~~~ 695 (930)
.+ ..+++|++|++++|. +..+- ..+..+++|++|++.+|+.. ..+. -|..+++|+.|+...+..
T Consensus 82 ~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred chHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEEccH
Confidence 55 368899999999887 44432 34577888999999888543 2232 256677777777655443
No 68
>PF13173 AAA_14: AAA domain
Probab=98.45 E-value=9.3e-07 Score=81.36 Aligned_cols=120 Identities=22% Similarity=0.232 Sum_probs=79.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGM 276 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (930)
.+++.|.|+.|+|||||+++++.+.. ....++|+...+........ .+ ..+.+.+....+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhccC
Confidence 36899999999999999999987422 33567777766533211100 00 222333333346
Q ss_pred eEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChHHHhh------hCCcceEeCCCCChHHH
Q 002362 277 CFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKSVASM------MGSTNIISIKELTEEEC 338 (930)
Q Consensus 277 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~------~~~~~~~~l~~L~~~~~ 338 (930)
+.+|+||++... ..|......+.+..+..+|++|+.+...... .+....+++.||+-.|.
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 778999999764 4687777677665567899999998765532 12245789999987764
No 69
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.44 E-value=4.2e-08 Score=96.98 Aligned_cols=202 Identities=18% Similarity=0.115 Sum_probs=114.9
Q ss_pred cCcccccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCc-ccccccCCcCCCC
Q 002362 604 IPRNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGT-ISLRYMPVGIGRL 682 (930)
Q Consensus 604 lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~-~~~~~~p~~i~~l 682 (930)
+|-.+.-+++|..+.++.|.-..+-.-...-+.|+++.++.+. ++..|. +-.++.+..+..+.- ......-..+..-
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~-~~~~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTT-IQDVPS-LLPETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred cccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccc-cccccc-ccchhhhcCccCCCCCccCCceEEecchH
Confidence 4444555566667777766544333322334567777766554 322221 111122222211110 0000111112223
Q ss_pred CCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCC
Q 002362 683 TSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRK 762 (930)
Q Consensus 683 ~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~ 762 (930)
..|.+|+++++.... +..++.-+++++.|.++.+..... . .+..+++|..|+|++|.++.
T Consensus 284 q~LtelDLS~N~I~~-----iDESvKL~Pkir~L~lS~N~i~~v-~--------nLa~L~~L~~LDLS~N~Ls~------ 343 (490)
T KOG1259|consen 284 QELTELDLSGNLITQ-----IDESVKLAPKLRRLILSQNRIRTV-Q--------NLAELPQLQLLDLSGNLLAE------ 343 (490)
T ss_pred hhhhhccccccchhh-----hhhhhhhccceeEEeccccceeee-h--------hhhhcccceEeecccchhHh------
Confidence 445666655544332 233445556666666666654321 1 35567889999999887654
Q ss_pred ccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCC--CCCCCCCCCCcceeeeccCc
Q 002362 763 NEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCE--KLPPLGKLPSLEKLSISFMC 835 (930)
Q Consensus 763 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~L~~~~ 835 (930)
+-..-..+.|++.|.+++|.+.. -+.++.+.+|..|++++|.+.. ....+|+||.|+.|.|.+++
T Consensus 344 ------~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 344 ------CVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ------hhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 12222346788999999998765 4567788899999999997543 45569999999999998776
No 70
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.42 E-value=3.1e-07 Score=93.78 Aligned_cols=91 Identities=15% Similarity=0.051 Sum_probs=62.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCC--ccHHHHHHHHHHHhcCCCCCCccH------HHHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSET--FEEFRVAKAIVEALDGHESRLGEF------QSLIK 267 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~~~~ 267 (930)
.-..++|+|++|+|||||++.++++.... +|+.++|+++++. +++.++++.|...+-....+.... .....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34679999999999999999999964433 8999999998776 799999999833332211111111 11222
Q ss_pred HHHHH-hcCceEEEEEeCccc
Q 002362 268 HIYES-VAGMCFLLVLDDVWD 287 (930)
Q Consensus 268 ~l~~~-l~~kr~LlVlDdv~~ 287 (930)
..... -.+++.++++|++..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 22221 258999999999954
No 71
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.1e-07 Score=99.30 Aligned_cols=156 Identities=15% Similarity=0.058 Sum_probs=98.7
Q ss_pred cceeEEEEEecCCcccc--ccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCc
Q 002362 529 EKVRHLLLIVGNGASFP--VSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPR 606 (930)
Q Consensus 529 ~~~r~l~l~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~ 606 (930)
+++|.+++......... .....|+++|.|+++.|-+. .-..+..+...+++|+.|+|+.|..... ... .
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~----nw~~v~~i~eqLp~Le~LNls~Nrl~~~---~~s--~ 191 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH----NWFPVLKIAEQLPSLENLNLSSNRLSNF---ISS--N 191 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHH----hHHHHHHHHHhcccchhcccccccccCC---ccc--c
Confidence 45566666666554322 25667899999999888432 1223455678899999999997654311 111 1
Q ss_pred ccccCCCCCeeeccCCccc--ccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccC--CcCCCC
Q 002362 607 NIERLVHLRYLNLSNQSIR--KLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMP--VGIGRL 682 (930)
Q Consensus 607 ~i~~L~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p--~~i~~l 682 (930)
.-..+.||+.|.|++|+++ .+-.....+++|+.|+|.+|.....-.....-+..|+.|+|++|+. ...+ ..++.+
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l-i~~~~~~~~~~l 270 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL-IDFDQGYKVGTL 270 (505)
T ss_pred chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc-cccccccccccc
Confidence 1125678999999999887 3333455678889999988853333333345567888888888844 3344 335667
Q ss_pred CCCCcCCceEeC
Q 002362 683 TSLRTLDEFYVS 694 (930)
Q Consensus 683 ~~L~~L~~~~~~ 694 (930)
+.|..|++..++
T Consensus 271 ~~L~~Lnls~tg 282 (505)
T KOG3207|consen 271 PGLNQLNLSSTG 282 (505)
T ss_pred cchhhhhccccC
Confidence 777777655443
No 72
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=5.9e-06 Score=92.21 Aligned_cols=181 Identities=15% Similarity=0.164 Sum_probs=112.5
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchH------------------HHH-hcCCeE
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHE------------------EVK-RKFDKI 230 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~------------------~~~-~~F~~~ 230 (930)
.++||.+..++.+...+.. +.-..-+.++|+.|+||||+|+.++... .+. ..+.-+
T Consensus 13 ~dliGQe~vv~~L~~a~~~-----~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTL-----NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHc-----CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 4689999888888887753 2234578999999999999999887520 011 112223
Q ss_pred EEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEE
Q 002362 231 LWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKIL 310 (930)
Q Consensus 231 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 310 (930)
+.+..+....+.+ .++|++.... .-..+++-++|+|++..-+....+.+...+-...+.+++|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCY----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHh----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 3444433322222 1122221110 0123455689999998766566777777777766677766
Q ss_pred EEc-CChHHHhhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHH
Q 002362 311 VTT-RKKSVASMM-GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAA 376 (930)
Q Consensus 311 vTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai 376 (930)
++| ....+...+ .....+++.+++.++....+.+.+...+..-. .+....|++.++|.+-.+
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 555 444544333 34678999999999999999887754332211 223667889998877543
No 73
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=4.3e-06 Score=96.18 Aligned_cols=194 Identities=17% Similarity=0.218 Sum_probs=113.4
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.++||.+..++.+...+... .-...+.++|..|+||||+|+.+++...-...+ ....+..-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~-----rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-------~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG-----RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-------TATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-------CCCCCCCCHHHHHHH
Confidence 46899999999998888632 233557899999999999999997731111000 001111111122221
Q ss_pred HH-------hcCC-CCCCccHHHHHHHHHH-HhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEE-cCChHHH
Q 002362 250 EA-------LDGH-ESRLGEFQSLIKHIYE-SVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVT-TRKKSVA 319 (930)
Q Consensus 250 ~~-------l~~~-~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT-tr~~~v~ 319 (930)
.. +... .....++.++...+.. -..+++-++|+|+++..+....+.++..+-......++|++ |....+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 10 0000 0111122222222221 13466679999999887766777777777665556665554 4444443
Q ss_pred hh-hCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHH
Q 002362 320 SM-MGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKII 379 (930)
Q Consensus 320 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~ 379 (930)
.. ..-...+++++++.++....+.+.+-....... ......|++.++|.+-.+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e----~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE----PRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 22 233679999999999999999876532221111 223567899999987644433
No 74
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=2.7e-06 Score=93.64 Aligned_cols=194 Identities=14% Similarity=0.114 Sum_probs=112.3
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHh-cCCeEEEEEeCCCccHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKR-KFDKILWVCVSETFEEFRVAKAI 248 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~i 248 (930)
.+++|.+..+..+..++... .-...+.++|+.|+||||+|+.+++. +.. +... ...+........+...+
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~-----ri~ha~Lf~GP~GtGKTTlAriLAk~--Lnce~~~~--~~pCg~C~sC~~i~~g~ 88 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSG-----KIGHAYIFFGPRGVGKTTIARILAKR--LNCENPIG--NEPCNECTSCLEITKGI 88 (484)
T ss_pred HHHhChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHh--cCcccccC--ccccCCCcHHHHHHccC
Confidence 46899999999988888642 22346899999999999999999873 211 0000 00011111111111111
Q ss_pred HHHh---cC-CCCCCccHHHHHHHHHHH-hcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEE-EEcCChHHHhhh
Q 002362 249 VEAL---DG-HESRLGEFQSLIKHIYES-VAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKIL-VTTRKKSVASMM 322 (930)
Q Consensus 249 ~~~l---~~-~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~v~~~~ 322 (930)
...+ .. ......++.++...+... ..++.-++|+|++..-+...++.+...+-.......+| .||....+...+
T Consensus 89 ~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 89 SSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred CccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence 0000 00 011112222333333221 24566699999998877777788877775544455544 455544443332
Q ss_pred -CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHH
Q 002362 323 -GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAA 376 (930)
Q Consensus 323 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai 376 (930)
.....|.+.+++.++..+.+.+.+-..+..-. .+....|++.++|.+.-+
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e----~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD----QEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCChHHHH
Confidence 33678999999999999999887643322111 234677999999988543
No 75
>PLN03025 replication factor C subunit; Provisional
Probab=98.38 E-value=6.4e-06 Score=89.00 Aligned_cols=182 Identities=13% Similarity=0.092 Sum_probs=105.5
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCC-eEEEEEeCCCccHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFD-KILWVCVSETFEEFRVAKAI 248 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 248 (930)
.+++|.++.++.+..++.. +....+.++|++|+||||+|+.+++.. ....|. .++-+..++..... ..+++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD------GNMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 4688988888888877653 233457799999999999999998731 122232 12222223222222 22222
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCCh-HHHhhh-CCcc
Q 002362 249 VEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKK-SVASMM-GSTN 326 (930)
Q Consensus 249 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~ 326 (930)
++.+...... .-.++.-++|+|+++.........+...+......+++|+++... .+...+ ....
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 2221110000 002345699999998765444455655554444567777766543 221111 2245
Q ss_pred eEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHH
Q 002362 327 IISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAA 376 (930)
Q Consensus 327 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai 376 (930)
.++++++++++....+.+.+-..+..-. .+....|++.++|-.-.+
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 7999999999999999887644332111 234677888998866433
No 76
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.38 E-value=3.9e-08 Score=99.97 Aligned_cols=96 Identities=16% Similarity=0.236 Sum_probs=66.2
Q ss_pred ccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCccc-------ccCCCCCeee
Q 002362 546 VSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNI-------ERLVHLRYLN 618 (930)
Q Consensus 546 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i-------~~L~~Lr~L~ 618 (930)
.....+..+..+.+++|.+.. .-.......+.+.+.||.-++++ .+......++|+.+ -..++|++||
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~--EAa~~i~~~L~~~~~L~~v~~sd---~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld 98 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGT--EAARAIAKVLASKKELREVNLSD---MFTGRLKDEIPEALKMLSKALLGCPKLQKLD 98 (382)
T ss_pred HHhcccCceEEEeccCCchhH--HHHHHHHHHHhhcccceeeehHh---hhcCCcHHHHHHHHHHHHHHHhcCCceeEee
Confidence 344567788889999986421 12233455577888999999984 32222345566543 3557999999
Q ss_pred ccCCccc-----ccccccccCCcccEEeccCCC
Q 002362 619 LSNQSIR-----KLPDTLCELYNLQKLDISCCC 646 (930)
Q Consensus 619 L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~ 646 (930)
||.|-+. .+-.-+.+++.|++|.|.+|.
T Consensus 99 LSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 99 LSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred ccccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 9999765 333446779999999999998
No 77
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=7.6e-06 Score=91.88 Aligned_cols=201 Identities=16% Similarity=0.203 Sum_probs=114.2
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhc-------------------CCeE
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRK-------------------FDKI 230 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 230 (930)
++++|.+...+.+...+... .-...+.++|++|+||||+|+.+++...-... +..+
T Consensus 14 ~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 46899988888887777532 23456899999999999999999773111000 0012
Q ss_pred EEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEE
Q 002362 231 LWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYE-SVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKI 309 (930)
Q Consensus 231 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 309 (930)
+.+..+.......+ ++|.+ .... ...+++-++|+|+++.-.....+.+...+........+
T Consensus 89 ~el~aa~~~gid~i-R~i~~-----------------~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRD-----------------AVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCHHHH-HHHHH-----------------HHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 22222211111111 11111 1110 12355669999999765444556666666654444554
Q ss_pred EE-EcCChHHHhhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcC-CchhHHHHHHhhhcC-
Q 002362 310 LV-TTRKKSVASMM-GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCK-GLPLAAKIIGSLMRS- 385 (930)
Q Consensus 310 iv-Ttr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~-glPLai~~~~~~l~~- 385 (930)
|+ ||....+...+ .....+++.+++.++....+.+.+......-. .+....|++.++ +++.|+..+-.+...
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~----~eal~~Ia~~s~GdlR~aln~Le~l~~~~ 226 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID----REALSFIAKRASGGLRDALTMLEQVWKFS 226 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 44 44334443333 33568999999999999998887643322111 233566777775 456777777654432
Q ss_pred --CCCHHHHHHHHh
Q 002362 386 --KETEEEWRRILN 397 (930)
Q Consensus 386 --~~~~~~w~~~l~ 397 (930)
+-+.+....++.
T Consensus 227 ~~~It~e~V~~~l~ 240 (472)
T PRK14962 227 EGKITLETVHEALG 240 (472)
T ss_pred CCCCCHHHHHHHHc
Confidence 124555555543
No 78
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.36 E-value=9.2e-06 Score=88.48 Aligned_cols=180 Identities=13% Similarity=0.076 Sum_probs=105.0
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEe--CCCccHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCV--SETFEEFRVAKA 247 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~ 247 (930)
.+++|+++.++.+..++... ....+.|+|.+|+||||+|+.+++.. ....+. ..++.+ +...... ...+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALAREL-YGEDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHH-cCCccc-cceEEeccccccchH-HHHH
Confidence 45899999999999988532 33457999999999999999998741 111221 122222 2222111 1111
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCCh-HHHhh-hCCc
Q 002362 248 IVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKK-SVASM-MGST 325 (930)
Q Consensus 248 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~ 325 (930)
.+..+....+ .....+-++|+|+++.-.......+...+......+++|+++... .+... ....
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1111110000 001234589999987654444455666666555567777776432 22111 1223
Q ss_pred ceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHH
Q 002362 326 NIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAA 376 (930)
Q Consensus 326 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai 376 (930)
..+++.++++++...++.+.+......-. .+....+++.++|.+--+
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i~----~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEIT----DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 47899999999998888887654332111 224677888999987654
No 79
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.35 E-value=4.6e-07 Score=86.73 Aligned_cols=124 Identities=21% Similarity=0.225 Sum_probs=52.2
Q ss_pred CcceeEEEEEecCCcccccccc-CCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCc
Q 002362 528 DEKVRHLLLIVGNGASFPVSTC-GVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPR 606 (930)
Q Consensus 528 ~~~~r~l~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~ 606 (930)
+...|.|.+.++.+..+. .+. .+.+|++|++++|.+.... . +..++.|++|++++| .+..++.
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-------~-l~~L~~L~~L~L~~N-------~I~~i~~ 81 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-------G-LPGLPRLKTLDLSNN-------RISSISE 81 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--T-------T-----TT--EEE--SS----------S-CH
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-------C-ccChhhhhhcccCCC-------CCCcccc
Confidence 345688999999887643 343 5789999999999865432 1 667899999999965 4555655
Q ss_pred cc-ccCCCCCeeeccCCcccccc--cccccCCcccEEeccCCCCCccccc----cccccCCcceEeecC
Q 002362 607 NI-ERLVHLRYLNLSNQSIRKLP--DTLCELYNLQKLDISCCCKLKELPQ----GIGKLINMRHLLNYG 668 (930)
Q Consensus 607 ~i-~~L~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~----~i~~L~~L~~L~l~~ 668 (930)
.+ ..+++|+.|.+++|.|..+- ..+..+++|++|++.+|. +...+. -+..+|+|+.||-..
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 45 36899999999999998653 356789999999999998 554443 367899999998643
No 80
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.35 E-value=1.8e-06 Score=88.06 Aligned_cols=158 Identities=18% Similarity=0.189 Sum_probs=100.5
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVA 274 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (930)
..+.-+.+||++|+||||||+.+.+.. +.+ ...||..|....-..-.++|.++... ...+.
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~ts--k~~--SyrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~ 220 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTS--KKH--SYRFVELSATNAKTNDVRDIFEQAQN---------------EKSLT 220 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhc--CCC--ceEEEEEeccccchHHHHHHHHHHHH---------------HHhhh
Confidence 367788899999999999999998842 222 25577777655444445555554321 12456
Q ss_pred CceEEEEEeCccccCccChhhhhhhhccCCCCcEEEE--EcCChHH---HhhhCCcceEeCCCCChHHHHHHHHHHHc--
Q 002362 275 GMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILV--TTRKKSV---ASMMGSTNIISIKELTEEECRLLFNKIAF-- 347 (930)
Q Consensus 275 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~~~~-- 347 (930)
++|.+|++|.|..-+..+-+. +||.-.+|+-++| ||.+... +..+....++.|+.|+.++-..++.+..-
T Consensus 221 krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 888999999997644333222 3566667777665 7777643 23345578999999999999998877332
Q ss_pred -CCCC---chhhH---HHHHHHHHHHHHcCCchh
Q 002362 348 -SDRP---IEERE---KLEQIGRKIANKCKGLPL 374 (930)
Q Consensus 348 -~~~~---~~~~~---~l~~~~~~i~~~c~glPL 374 (930)
.... .-.++ --..+..-++..|.|-.-
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 1111 01111 123455667777877654
No 81
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=8.5e-06 Score=92.32 Aligned_cols=196 Identities=18% Similarity=0.222 Sum_probs=111.9
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.+++|++..++.+...+... .-...+.++|+.|+||||+|+.+++. . .|.-|.... .+......+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~-----rl~hA~Lf~GP~GvGKTTlA~~lAk~--L----~C~~~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN-----KLTHAYIFSGPRGIGKTSIAKIFAKA--I----NCLNPKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHH--h----cCCCCCCCC-CCcccHHHHHHH
Confidence 46899999999999988542 23467889999999999999998763 1 111121110 111111111111
Q ss_pred HHh-------cCC-CCCCccHHHHHHHHHH-HhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEc-CChHHH
Q 002362 250 EAL-------DGH-ESRLGEFQSLIKHIYE-SVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTT-RKKSVA 319 (930)
Q Consensus 250 ~~l-------~~~-~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~ 319 (930)
... ... .....++.++...+.. -..+++-++|+|+++......+..+...+-.....+.+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 110 000 0011112222222211 112334479999998766566777777776655566665544 444443
Q ss_pred hh-hCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchh-HHHHHHh
Q 002362 320 SM-MGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPL-AAKIIGS 381 (930)
Q Consensus 320 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPL-ai~~~~~ 381 (930)
.. ......+++.++++++....+.+.+...+..-. .+.+..+++.++|.+- |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 233568999999999999888886643221111 1236778899999664 5544444
No 82
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.33 E-value=1.4e-06 Score=92.42 Aligned_cols=103 Identities=13% Similarity=0.049 Sum_probs=67.9
Q ss_pred HHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCc--cHHHHHHHHHHHhcCCC
Q 002362 179 KNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETF--EEFRVAKAIVEALDGHE 256 (930)
Q Consensus 179 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~ 256 (930)
--++++.+..-. .-...+|+|++|+||||||+.+|++.... +|+.++||.+++.. .+.++++.|...+-...
T Consensus 156 ~~rvID~l~PIG-----kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st 229 (416)
T PRK09376 156 STRIIDLIAPIG-----KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST 229 (416)
T ss_pred ceeeeeeecccc-----cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC
Confidence 345666665322 34578999999999999999999975444 89999999999887 77788887763222111
Q ss_pred CCCccHH-----HHHHHHHHH--hcCceEEEEEeCccc
Q 002362 257 SRLGEFQ-----SLIKHIYES--VAGMCFLLVLDDVWD 287 (930)
Q Consensus 257 ~~~~~~~-----~~~~~l~~~--l~~kr~LlVlDdv~~ 287 (930)
.+..... ...-...++ -.+++++|++|++..
T Consensus 230 ~d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 230 FDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 1111111 111111222 368999999999953
No 83
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.32 E-value=2.5e-05 Score=80.09 Aligned_cols=152 Identities=16% Similarity=0.171 Sum_probs=92.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGM 276 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (930)
...+.|+|+.|+|||+|++.+++. ....-..+.|+.+..... ...+..+. +..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~--------------------~~~~~~~~----~~~- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW--------------------FVPEVLEG----MEQ- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh--------------------hhHHHHHH----hhh-
Confidence 357899999999999999999984 333334566776643100 00111111 111
Q ss_pred eEEEEEeCccccC-ccChhh-hhhhhccC-CCC-cEEEEEcCCh---------HHHhhhCCcceEeCCCCChHHHHHHHH
Q 002362 277 CFLLVLDDVWDGN-YMKWEP-FFHCLKNG-LHR-SKILVTTRKK---------SVASMMGSTNIISIKELTEEECRLLFN 343 (930)
Q Consensus 277 r~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~g-s~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 343 (930)
--+|++||+.... ...|+. +...+... ..| .++|+||+.. +..+.+....+++++++++++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 1388999996532 134543 33333221 123 4688988754 344455666899999999999999998
Q ss_pred HHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHH
Q 002362 344 KIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKII 379 (930)
Q Consensus 344 ~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~ 379 (930)
+++....- ..+ +++..-|++.+.|..-++..+
T Consensus 178 ~~a~~~~~-~l~---~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 178 LRARLRGF-ELP---EDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHcCC-CCC---HHHHHHHHHhhcCCHHHHHHH
Confidence 86643221 111 345677888888766555443
No 84
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=8.8e-06 Score=92.45 Aligned_cols=182 Identities=13% Similarity=0.147 Sum_probs=109.2
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHH-------------------hcCCeE
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVK-------------------RKFDKI 230 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 230 (930)
.++||-+..++.+..++... .-...+.++|+.|+||||+|+.+++..--. +.|.-+
T Consensus 16 ~divGq~~v~~~L~~~~~~~-----~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQ-----YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhC-----CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 46899999999999998642 234567899999999999999887731100 111112
Q ss_pred EEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEE
Q 002362 231 LWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKIL 310 (930)
Q Consensus 231 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 310 (930)
+.+..+....+.++ +++++.+.. .-..++.-++|+|+++..+......+...+-.....+++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 22222222122211 112211110 0123555689999998877667777777777666667766
Q ss_pred EEcC-ChHHHhh-hCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHH
Q 002362 311 VTTR-KKSVASM-MGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAK 377 (930)
Q Consensus 311 vTtr-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~ 377 (930)
++|. ...+... .+....+++++++.++....+.+.+-..+....+ +....|++.++|.+.-+.
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~----~al~~ia~~s~GslR~al 218 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFEN----AALDLLARAANGSVRDAL 218 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHcCCcHHHHH
Confidence 5544 3333322 2335678999999999887776665433221111 235678888999775443
No 85
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.2e-05 Score=92.56 Aligned_cols=196 Identities=14% Similarity=0.158 Sum_probs=110.8
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhc--CCeEEEEEeCCCccHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRK--FDKILWVCVSETFEEFRVAKA 247 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~ 247 (930)
+++||-+..++.|..++... .-...+.++|..|+||||+|+.+.+..--... ...... ..+..-..-+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~-----rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQ-----RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 46899888888888888642 23467799999999999999998652100000 000000 01111111111
Q ss_pred HHHHh-----cCCCCCCccHHHHHHHHHHH----hcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEc-CChH
Q 002362 248 IVEAL-----DGHESRLGEFQSLIKHIYES----VAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTT-RKKS 317 (930)
Q Consensus 248 i~~~l-----~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~ 317 (930)
|...- .........+++....+... ..++.-++|+|+++..+...++.+...+-......++|++| ....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 11000 00000111222222222111 12444589999999877777777777776655566665544 4444
Q ss_pred HHhh-hCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHH
Q 002362 318 VASM-MGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKI 378 (930)
Q Consensus 318 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~ 378 (930)
+... ......++++++++++....+.+.+...+.... .+....|++.++|.+--+..
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDALS 224 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 4322 334678999999999999999877643332111 23467788899987754443
No 86
>PTZ00202 tuzin; Provisional
Probab=98.31 E-value=2.3e-05 Score=83.62 Aligned_cols=167 Identities=13% Similarity=0.094 Sum_probs=103.8
Q ss_pred CcccCCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHH
Q 002362 165 SLIDEEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRV 244 (930)
Q Consensus 165 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 244 (930)
.+.+.+.|+||+.+...+...|...+. ...+++.|.|++|+|||||++.+.... + ...++.-.. +..++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l----~--~~qL~vNpr--g~eEl 325 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKE----G--MPAVFVDVR--GTEDT 325 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcC----C--ceEEEECCC--CHHHH
Confidence 345667899999999999998865443 245699999999999999999988631 1 223333233 67999
Q ss_pred HHHHHHHhcCCCCCC-c-cHHHHHHHHHHHh-c-CceEEEEEeCccccCccChhhhh---hhhccCCCCcEEEEEcCChH
Q 002362 245 AKAIVEALDGHESRL-G-EFQSLIKHIYESV-A-GMCFLLVLDDVWDGNYMKWEPFF---HCLKNGLHRSKILVTTRKKS 317 (930)
Q Consensus 245 ~~~i~~~l~~~~~~~-~-~~~~~~~~l~~~l-~-~kr~LlVlDdv~~~~~~~~~~l~---~~l~~~~~gs~iivTtr~~~ 317 (930)
+..|+.+++.+.... . -.+.+.+.+.+.- . +++.+||+-==.- .....+. -.|.....-|.|++---.+.
T Consensus 326 Lr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg---~~l~rvyne~v~la~drr~ch~v~evples 402 (550)
T PTZ00202 326 LRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREG---SSLQRVYNEVVALACDRRLCHVVIEVPLES 402 (550)
T ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCC---CcHHHHHHHHHHHHccchhheeeeeehHhh
Confidence 999999999743222 1 1233444443322 3 6777777643211 1122211 12334445567777555444
Q ss_pred HHhhh---CCcceEeCCCCChHHHHHHHHHH
Q 002362 318 VASMM---GSTNIISIKELTEEECRLLFNKI 345 (930)
Q Consensus 318 v~~~~---~~~~~~~l~~L~~~~~~~lf~~~ 345 (930)
..-.. .--..|.+.+++.++|.++-.+.
T Consensus 403 lt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 403 LTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred cchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 32211 11457889999999998887664
No 87
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=1.2e-05 Score=88.20 Aligned_cols=181 Identities=12% Similarity=0.100 Sum_probs=108.3
Q ss_pred CceecchhhHHHHHHHhccCCCC----CCCCeEEEEEEecCCChHHHHHHHHhchHHHH------------------hcC
Q 002362 170 EEICGRVDEKNELLSKLLCESSD----SPKGLHIISIIGMGGMGKTTLAQLACNHEEVK------------------RKF 227 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~F 227 (930)
.+++|.+..++.+...+...... +..-..-+.++|+.|+||||+|+.++....-. ..+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 35889999999999998754210 01134568899999999999999886521000 001
Q ss_pred CeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHH---HHHHH-HhcCceEEEEEeCccccCccChhhhhhhhccC
Q 002362 228 DKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLI---KHIYE-SVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNG 303 (930)
Q Consensus 228 ~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~---~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 303 (930)
.-+.++.... ....+++.. ..... -..+++-++|+|+++..+......+...+-..
T Consensus 85 pD~~~i~~~~--------------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 85 PDVRVVAPEG--------------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CCEEEecccc--------------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 1111111110 011122222 11111 11345558888999887666666677777665
Q ss_pred CCCcEEEEEcCC-hHHHhhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHH
Q 002362 304 LHRSKILVTTRK-KSVASMM-GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKII 379 (930)
Q Consensus 304 ~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~ 379 (930)
..+..+|++|.+ ..+...+ +....+.+.+++.++..+.+.+... . . .+.+..+++.++|.|..+..+
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~--~---~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG--V---D----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC--C---C----HHHHHHHHHHcCCCHHHHHHH
Confidence 566666666555 3444332 3367999999999999988875321 1 1 123677899999999765444
No 88
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.30 E-value=2.2e-05 Score=86.85 Aligned_cols=183 Identities=14% Similarity=0.158 Sum_probs=110.0
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHH--------------------hcCCe
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVK--------------------RKFDK 229 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~ 229 (930)
.+++|.+..++.+...+.. +.-...+.++|++|+||||+|+.+.....-. .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~-----~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKN-----GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 4689999999999998863 2234578899999999999998887631100 02221
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCceEEEEEeCccccCccChhhhhhhhccCCCCcE
Q 002362 230 ILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYE-SVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSK 308 (930)
Q Consensus 230 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 308 (930)
+++..+...... +..++...+.. ...+++-++|+|++..........+...+......+.
T Consensus 89 -~~~~~~~~~~~~------------------~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 -IEIDAASNNGVD------------------DIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred -EEeeccccCCHH------------------HHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 222221111111 11112222111 1224455899999976544456667777755555667
Q ss_pred EEEEcCChH-HHhhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHH
Q 002362 309 ILVTTRKKS-VASMM-GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIG 380 (930)
Q Consensus 309 iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~ 380 (930)
+|++|.+.. +...+ .....+++.++++++...++...+-..+..-. .+.+..+++.++|.|..+....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~----~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE----DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCChHHHHHHH
Confidence 666665443 33222 23468899999999999988886643322111 2347778899999887654443
No 89
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.29 E-value=6e-06 Score=97.17 Aligned_cols=169 Identities=19% Similarity=0.292 Sum_probs=95.5
Q ss_pred CceecchhhHH---HHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHH
Q 002362 170 EEICGRVDEKN---ELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAK 246 (930)
Q Consensus 170 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 246 (930)
++|+|.+..+. .+...+.. .....+.++|++|+||||||+.+++. ...+|. .+..+. ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~---- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVK---- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhH----
Confidence 45889887664 34444432 24556789999999999999999983 434441 111110 0000
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHh--cCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEE--EcCChH--HHh
Q 002362 247 AIVEALDGHESRLGEFQSLIKHIYESV--AGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILV--TTRKKS--VAS 320 (930)
Q Consensus 247 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~--v~~ 320 (930)
+..+......+.+ .+++.++||||++.-+...++.+...+. .|+.++| ||.+.. +..
T Consensus 92 --------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 92 --------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred --------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 1111112221222 2466799999998655444555554443 3555555 344431 222
Q ss_pred h-hCCcceEeCCCCChHHHHHHHHHHHcC------CCCchhhHHHHHHHHHHHHHcCCchh
Q 002362 321 M-MGSTNIISIKELTEEECRLLFNKIAFS------DRPIEEREKLEQIGRKIANKCKGLPL 374 (930)
Q Consensus 321 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~------~~~~~~~~~l~~~~~~i~~~c~glPL 374 (930)
. ......+.+++++.++...++.+.+-. ....... .+....|++.+.|..-
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~---deaL~~La~~s~GD~R 212 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLE---PEAEKHLVDVANGDAR 212 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCC---HHHHHHHHHhCCCCHH
Confidence 1 122568999999999999999876531 1111111 2345678888888644
No 90
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=1.3e-05 Score=86.71 Aligned_cols=195 Identities=17% Similarity=0.189 Sum_probs=116.5
Q ss_pred CCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhc----CCeEEEEEeCCCccHHHH
Q 002362 169 EEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRK----FDKILWVCVSETFEEFRV 244 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~ 244 (930)
-..++|.++..+.+...+.. +.....+.|+|+.|+||||+|..+... +-.+ +... ...........
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~-----grl~ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~~---~~~~~~~~c~~ 91 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYRE-----GKLHHALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAPE---TLADPDPASPV 91 (351)
T ss_pred hhhccCcHHHHHHHHHHHHc-----CCCCeeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCcc---ccCCCCCCCHH
Confidence 35689999999999998864 234557999999999999999988773 2110 1111 00111111122
Q ss_pred HHHHHHH-------hcCC--C-----CCCccHHHHHHHHHHHh-----cCceEEEEEeCccccCccChhhhhhhhccCCC
Q 002362 245 AKAIVEA-------LDGH--E-----SRLGEFQSLIKHIYESV-----AGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLH 305 (930)
Q Consensus 245 ~~~i~~~-------l~~~--~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 305 (930)
.+.|... +..+ . .....+++.. .+.+.+ .+++-++|+|+++..+....+.+...+.....
T Consensus 92 c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~ 170 (351)
T PRK09112 92 WRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPA 170 (351)
T ss_pred HHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCC
Confidence 2333222 1000 0 0112234432 333333 35667999999988776667777777766544
Q ss_pred CcEE-EEEcCChHHHhhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHH
Q 002362 306 RSKI-LVTTRKKSVASMM-GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIG 380 (930)
Q Consensus 306 gs~i-ivTtr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~ 380 (930)
+..+ ++|++...+...+ .....+++.+++.++..+++.+.+.... .. .+....+++.++|.|..+..+.
T Consensus 171 ~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~----~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 171 RALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SD----GEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 5554 4454444333222 2356999999999999999987432111 01 2235678999999998665443
No 91
>PRK05642 DNA replication initiation factor; Validated
Probab=98.29 E-value=2.2e-05 Score=80.45 Aligned_cols=155 Identities=17% Similarity=0.234 Sum_probs=94.4
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGM 276 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (930)
...+.|+|..|+|||.|++.+++. ....-..++|++..+ +... .. .+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~--------------~~----~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR--------------GP----ELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh--------------hH----HHHHhhhhC
Confidence 367899999999999999999883 333334567776532 1110 01 122223222
Q ss_pred eEEEEEeCccccC-ccChhh-hhhhhcc-CCCCcEEEEEcCChH---------HHhhhCCcceEeCCCCChHHHHHHHHH
Q 002362 277 CFLLVLDDVWDGN-YMKWEP-FFHCLKN-GLHRSKILVTTRKKS---------VASMMGSTNIISIKELTEEECRLLFNK 344 (930)
Q Consensus 277 r~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 344 (930)
. ++|+||+.... ...|.. +...+.. ...|..||+|++... ..+.+....+++++++++++..+++++
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 2 68899996432 234544 4444432 234567888887532 222334456899999999999999997
Q ss_pred HHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHhh
Q 002362 345 IAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSL 382 (930)
Q Consensus 345 ~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~ 382 (930)
++....- ..+ +++..-|++.+.|..-++..+-..
T Consensus 178 ka~~~~~-~l~---~ev~~~L~~~~~~d~r~l~~~l~~ 211 (234)
T PRK05642 178 RASRRGL-HLT---DEVGHFILTRGTRSMSALFDLLER 211 (234)
T ss_pred HHHHcCC-CCC---HHHHHHHHHhcCCCHHHHHHHHHH
Confidence 6644321 111 355777888888876655444333
No 92
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=9.9e-06 Score=92.73 Aligned_cols=182 Identities=14% Similarity=0.181 Sum_probs=108.8
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHh-------------------cCCeE
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKR-------------------KFDKI 230 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 230 (930)
.+++|.+..++.|..++... .-...+.++|..|+||||+|+.+.+...-.. .|..+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~-----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG-----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 46899999999999998642 2346789999999999999998876311000 01111
Q ss_pred EEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEE
Q 002362 231 LWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYE-SVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKI 309 (930)
Q Consensus 231 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 309 (930)
+.+..+....+ .++.++...... -..+++-++|+|++...+......+...+-......++
T Consensus 91 lEidaAs~~gV------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~f 152 (709)
T PRK08691 91 LEIDAASNTGI------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (709)
T ss_pred EEEeccccCCH------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEE
Confidence 12211111111 112222221111 12355669999999776554556677676654455666
Q ss_pred EEEcCCh-HHHhh-hCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHH
Q 002362 310 LVTTRKK-SVASM-MGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKI 378 (930)
Q Consensus 310 ivTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~ 378 (930)
|++|.+. .+... .+....+.+.+++.++....+.+.+-..+.... .+....|++.++|.+.-+..
T Consensus 153 ILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id----~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 153 ILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE----PPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred EEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHhCCCHHHHHH
Confidence 6666543 22221 233457889999999999999887654332111 23467899999998854433
No 93
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.28 E-value=9.1e-06 Score=81.76 Aligned_cols=190 Identities=16% Similarity=0.112 Sum_probs=115.6
Q ss_pred CCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEE-EEEeCCCccHHHHHHH
Q 002362 169 EEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKIL-WVCVSETFEEFRVAKA 247 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~~~~~ 247 (930)
-++++|.+..+.-+.+.+.. ....+...+|++|.|||+-|+.++...--.+-|.+++ =.++|......
T Consensus 35 ~de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis----- 103 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS----- 103 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-----
Confidence 35689999999999998874 2567899999999999999988876311123454432 23444332222
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHh--cCce-EEEEEeCccccCccChhhhhhhhccCCCCcEEE-EEcCChHHHhhh-
Q 002362 248 IVEALDGHESRLGEFQSLIKHIYESV--AGMC-FLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKIL-VTTRKKSVASMM- 322 (930)
Q Consensus 248 i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~v~~~~- 322 (930)
+.+ ....+...+........ ..++ -.||||+++....+.|..+...+-+....++.| ||+--..+...+
T Consensus 104 vvr------~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 104 VVR------EKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred chh------hhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 000 00011111111000000 0122 378999999998999999999888866677755 444433222221
Q ss_pred CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCch-hHHHHH
Q 002362 323 GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLP-LAAKII 379 (930)
Q Consensus 323 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glP-Lai~~~ 379 (930)
.-...|..++|.+++...-++..+-..+...+. +..+.|++.++|-- -|+.++
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~----~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDD----DALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHcCCcHHHHHHHH
Confidence 224578999999999999888887654443222 33667888888843 344333
No 94
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.26 E-value=2.2e-05 Score=80.50 Aligned_cols=153 Identities=12% Similarity=0.110 Sum_probs=88.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAG 275 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 275 (930)
....+.|+|..|+|||+||+.+++... ... ....+++...... . + ... .
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~~------~----~------------------~~~-~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPLL------A----F------------------DFD-P 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhHH------H----H------------------hhc-c
Confidence 346789999999999999999998421 222 2344555433110 0 0 011 1
Q ss_pred ceEEEEEeCccccCccChhhhhhhhccC-CCCc-EEEEEcCChHHH--------hhhCCcceEeCCCCChHHHHHHHHHH
Q 002362 276 MCFLLVLDDVWDGNYMKWEPFFHCLKNG-LHRS-KILVTTRKKSVA--------SMMGSTNIISIKELTEEECRLLFNKI 345 (930)
Q Consensus 276 kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iivTtr~~~v~--------~~~~~~~~~~l~~L~~~~~~~lf~~~ 345 (930)
..-+||+||+...+...-..+...+... ..+. .||+|++..... ..+.....+++.++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 2337899999754322223344444331 2334 466776643221 12333468999999998877777664
Q ss_pred HcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHhhh
Q 002362 346 AFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLM 383 (930)
Q Consensus 346 ~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~l 383 (930)
+-.... ... +++...+++.+.|.+..+..+-..+
T Consensus 170 ~~~~~v-~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERGL-QLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcCC-CCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 422221 111 2346778888999998877666555
No 95
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.25 E-value=1.7e-05 Score=78.70 Aligned_cols=91 Identities=12% Similarity=0.132 Sum_probs=64.5
Q ss_pred CceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCCh-HHHhhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCc
Q 002362 275 GMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKK-SVASMM-GSTNIISIKELTEEECRLLFNKIAFSDRPI 352 (930)
Q Consensus 275 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 352 (930)
+.+-++|+|++.......++.+...+......+.+|++|++. .+...+ .....+++.+++.++..+++.+. + -
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g-i-- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G-I-- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C-C--
Confidence 556689999998766666777888887766667777766643 322222 23568999999999999998876 2 1
Q ss_pred hhhHHHHHHHHHHHHHcCCchhH
Q 002362 353 EEREKLEQIGRKIANKCKGLPLA 375 (930)
Q Consensus 353 ~~~~~l~~~~~~i~~~c~glPLa 375 (930)
. .+.+..|++.++|.|..
T Consensus 170 ~-----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 S-----EEAAELLLALAGGSPGA 187 (188)
T ss_pred C-----HHHHHHHHHHcCCCccc
Confidence 1 23478899999998853
No 96
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=3.7e-05 Score=83.60 Aligned_cols=196 Identities=14% Similarity=0.082 Sum_probs=114.6
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEE---EEeCCCccHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILW---VCVSETFEEFRVAK 246 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w---v~vs~~~~~~~~~~ 246 (930)
.+++|.++..+.+.+.+... .-..-+.++|+.|+||+|+|..+....--......... .............+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSG-----RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 56899999999999988642 23456899999999999999888763110000000000 00000000001111
Q ss_pred HHHHHhc-----------CCC---CCCccHHHHHHHHHHHh-----cCceEEEEEeCccccCccChhhhhhhhccCCCCc
Q 002362 247 AIVEALD-----------GHE---SRLGEFQSLIKHIYESV-----AGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRS 307 (930)
Q Consensus 247 ~i~~~l~-----------~~~---~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 307 (930)
.|...-. ... .....+++. +.+.+.+ .+.+-++|+||++..+......+...+.....++
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdqi-R~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEV-RELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHH-HHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 1111000 000 011223442 3333333 2556799999998887777777887777765667
Q ss_pred EEEEEcCCh-HHHhhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHH
Q 002362 308 KILVTTRKK-SVASMM-GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKII 379 (930)
Q Consensus 308 ~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~ 379 (930)
.+|++|... .+...+ .....+.+.+++.++..+++.+..... ... ....+++.++|.|+.+..+
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~----~~~----~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL----PDD----PRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC----CHH----HHHHHHHHcCCCHHHHHHH
Confidence 677766655 333222 336789999999999999998754211 111 1256889999999866554
No 97
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.23 E-value=5.5e-05 Score=76.46 Aligned_cols=182 Identities=14% Similarity=0.207 Sum_probs=100.7
Q ss_pred ceecch-hhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcC--CeEEEEEeCCCccHHHHHHH
Q 002362 171 EICGRV-DEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKF--DKILWVCVSETFEEFRVAKA 247 (930)
Q Consensus 171 ~~vGr~-~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~ 247 (930)
-++|.. +..-.....+.... +.....+.|+|..|+|||.|.+.+++. ..+.. ..++|+++ .++...
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~~------~~f~~~ 78 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLSA------EEFIRE 78 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEEH------HHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeecH------HHHHHH
Confidence 345643 23334444444432 224556899999999999999999994 44433 24556543 455556
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCc-cChhh-hhhhhcc-CCCCcEEEEEcCCh--------
Q 002362 248 IVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNY-MKWEP-FFHCLKN-GLHRSKILVTTRKK-------- 316 (930)
Q Consensus 248 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~iivTtr~~-------- 316 (930)
+...+... ... .+.+.+++-. +|++||++.-.. ..|.. +...+.. ...|-+||+|++..
T Consensus 79 ~~~~~~~~-----~~~----~~~~~~~~~D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~ 148 (219)
T PF00308_consen 79 FADALRDG-----EIE----EFKDRLRSAD-LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLL 148 (219)
T ss_dssp HHHHHHTT-----SHH----HHHHHHCTSS-EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-
T ss_pred HHHHHHcc-----cch----hhhhhhhcCC-EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccC
Confidence 66555441 122 2334444333 889999976332 22333 3322222 12456899999653
Q ss_pred -HHHhhhCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHH
Q 002362 317 -SVASMMGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAK 377 (930)
Q Consensus 317 -~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~ 377 (930)
...+.+...-.++++++++++...++.+++....-. . -++++.-|++.+.+..-.+.
T Consensus 149 ~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~-l---~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 149 PDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE-L---PEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT---S----HHHHHHHHHHTTSSHHHHH
T ss_pred hhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC-C---cHHHHHHHHHhhcCCHHHHH
Confidence 233445566789999999999999999887543321 1 13446667777666554443
No 98
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=1.5e-05 Score=91.20 Aligned_cols=184 Identities=14% Similarity=0.188 Sum_probs=109.9
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHH-------------------hcCCeE
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVK-------------------RKFDKI 230 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 230 (930)
.+++|.+..++.+..++... .-...+.++|+.|+||||+|+.+.....-. +.|.-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~-----~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQ-----RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 46899999999999888642 234567899999999999999987631100 011112
Q ss_pred EEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHH----HhcCceEEEEEeCccccCccChhhhhhhhccCCCC
Q 002362 231 LWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYE----SVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHR 306 (930)
Q Consensus 231 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 306 (930)
+++..+.. ...+++...+.. -..+++-++|+|+++.......+.+...+-.....
T Consensus 91 ~ei~~~~~---------------------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVDAASN---------------------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEeecccc---------------------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 22221111 112222211111 11356669999999876655667777777665556
Q ss_pred cEEEEEc-CChHHHhh-hCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchh-HHHHHHhhh
Q 002362 307 SKILVTT-RKKSVASM-MGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPL-AAKIIGSLM 383 (930)
Q Consensus 307 s~iivTt-r~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPL-ai~~~~~~l 383 (930)
+.+|++| ..+.+... ......+++++++.++....+.+.+...+.... ......|++.++|.+- |+..+-.++
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~----~~al~~la~~s~Gslr~al~lldqai 225 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD----ATALQLLARAAAGSMRDALSLLDQAI 225 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6666555 43333322 222568999999999999888776543221111 2235778889999775 444443333
No 99
>PLN03150 hypothetical protein; Provisional
Probab=98.22 E-value=1.2e-06 Score=103.06 Aligned_cols=93 Identities=29% Similarity=0.441 Sum_probs=70.4
Q ss_pred cceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccc-ccccccccCCcccEEeccCCCCCccccccccccCCc
Q 002362 583 SLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIR-KLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINM 661 (930)
Q Consensus 583 ~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L 661 (930)
.++.|+|++|... ..+|..|++|.+|++|+|++|.+. .+|..++.+++|++|+|++|.....+|..+++|++|
T Consensus 419 ~v~~L~L~~n~L~------g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLDNQGLR------GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEEECCCCCcc------ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 3677778755322 456778888888888888888876 677788888888888888887666788888888888
Q ss_pred ceEeecCcccccccCCcCCC
Q 002362 662 RHLLNYGTISLRYMPVGIGR 681 (930)
Q Consensus 662 ~~L~l~~~~~~~~~p~~i~~ 681 (930)
++|++++|.....+|..++.
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred CEEECcCCcccccCChHHhh
Confidence 88888887666677776654
No 100
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=3.1e-05 Score=88.79 Aligned_cols=199 Identities=14% Similarity=0.176 Sum_probs=114.7
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.+++|.+..++.+..++... .-...+.++|+.|+||||+|+.+++...-....+ + ..+..-..-+.|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhh
Confidence 46899999999999998642 2345678999999999999999886311000000 0 0011111111111
Q ss_pred HH---------hcC-CCCCCccHHHHHHHHHHH-hcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEE-EEcCChH
Q 002362 250 EA---------LDG-HESRLGEFQSLIKHIYES-VAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKIL-VTTRKKS 317 (930)
Q Consensus 250 ~~---------l~~-~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~ 317 (930)
.. +.. ......++.++...+... ..+++-++|+|++........+.|...+-.......+| +||....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00 000 001111222222222211 23455589999998777667777777777665566655 4555555
Q ss_pred HHhh-hCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchh-HHHHHHhhhc
Q 002362 318 VASM-MGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPL-AAKIIGSLMR 384 (930)
Q Consensus 318 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPL-ai~~~~~~l~ 384 (930)
+... .+....+++.+++.++..+.+.+.+...+.... .+....|++.++|.+- |+..+-.++.
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 4433 233678999999999998888876643322111 2235678889999764 5555555443
No 101
>PRK09087 hypothetical protein; Validated
Probab=98.21 E-value=1.6e-05 Score=80.58 Aligned_cols=141 Identities=16% Similarity=0.225 Sum_probs=85.4
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGM 276 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (930)
.+.+.|+|..|+|||+|++.+++.. ...|++.. .+..+++.. +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~~---------------------~~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAANA---------------------AAE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHHh---------------------hhc-
Confidence 3568999999999999999887631 12233331 111111111 111
Q ss_pred eEEEEEeCccccCccChhhhhhhhcc-CCCCcEEEEEcCC---------hHHHhhhCCcceEeCCCCChHHHHHHHHHHH
Q 002362 277 CFLLVLDDVWDGNYMKWEPFFHCLKN-GLHRSKILVTTRK---------KSVASMMGSTNIISIKELTEEECRLLFNKIA 346 (930)
Q Consensus 277 r~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 346 (930)
-+|++||+..... .-+.+...+.. ...|..||+|++. ++....+....+++++++++++-.+++++++
T Consensus 89 -~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 2788899964321 11223333322 1235678998874 3344555667899999999999999999887
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcCCchhHHHH
Q 002362 347 FSDRPIEEREKLEQIGRKIANKCKGLPLAAKI 378 (930)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~ 378 (930)
-...- ..+ +++..-|++.+.|..-++..
T Consensus 167 ~~~~~-~l~---~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 167 ADRQL-YVD---PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHcCC-CCC---HHHHHHHHHHhhhhHHHHHH
Confidence 44322 111 34466677777777766653
No 102
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=1.6e-05 Score=88.47 Aligned_cols=201 Identities=16% Similarity=0.197 Sum_probs=112.0
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEE-eCCCccHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVC-VSETFEEFRVAKAI 248 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i 248 (930)
.+++|.+..++.+..++... .-...+.++|+.|+||||+|+.+++.-.-...++...|.. +......-..-+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 46899998888888888631 2334588999999999999999877321111111111110 00111111111111
Q ss_pred HHHhcC-----CCCCCccHHHHHHHHHHHh-----cCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEc-CChH
Q 002362 249 VEALDG-----HESRLGEFQSLIKHIYESV-----AGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTT-RKKS 317 (930)
Q Consensus 249 ~~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~ 317 (930)
...... ........+++.. +.+.+ .+++-++|+|++.......++.+...+....+.+.+|++| +...
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 110000 0001111233322 22222 3455689999998766567788888887766667766555 4444
Q ss_pred HHhhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchh-HHHHHH
Q 002362 318 VASMM-GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPL-AAKIIG 380 (930)
Q Consensus 318 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPL-ai~~~~ 380 (930)
+...+ .....+++.++++++....+...+-.....-. .+.+..|++.++|.+- |+..+-
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~----~~al~~l~~~s~g~lr~a~~~L~ 230 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD----ADALQLIGRKAQGSMRDAQSILD 230 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 44322 22457899999999998888876532221111 2347789999999775 444333
No 103
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=4.3e-08 Score=97.08 Aligned_cols=90 Identities=21% Similarity=0.193 Sum_probs=58.4
Q ss_pred cccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcC-CCCCCcceEEEeeccCCCCCCccc----ccccCccEEEeeCC
Q 002362 737 ELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFL-QPPPNLRKLLIGSYRGKTVFPPWM----MSLTNLRSLDLDDC 811 (930)
Q Consensus 737 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~p~~~----~~l~~L~~L~L~~~ 811 (930)
.+.+++.|..|+|+||.+..+ .+-... .--++|..|+|+||.-.- ..+.+ ..+++|..|+|++|
T Consensus 255 l~~scs~L~~LNlsWc~l~~~----------~Vtv~V~hise~l~~LNlsG~rrnl-~~sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 255 LLSSCSRLDELNLSWCFLFTE----------KVTVAVAHISETLTQLNLSGYRRNL-QKSHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred HHHhhhhHhhcCchHhhccch----------hhhHHHhhhchhhhhhhhhhhHhhh-hhhHHHHHHHhCCceeeeccccc
Confidence 456677888888888876542 011111 123678888888886322 12222 26889999999988
Q ss_pred CCCCC--CCCCCCCCCcceeeeccCcCc
Q 002362 812 ENCEK--LPPLGKLPSLEKLSISFMCSV 837 (930)
Q Consensus 812 ~~~~~--l~~l~~l~~L~~L~L~~~~~l 837 (930)
..... +..+-+++.|++|.++.|..+
T Consensus 324 v~l~~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 324 VMLKNDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred cccCchHHHHHHhcchheeeehhhhcCC
Confidence 75543 222778889999999988754
No 104
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.18 E-value=1.4e-05 Score=88.19 Aligned_cols=181 Identities=17% Similarity=0.159 Sum_probs=100.9
Q ss_pred ccCCceecchhhHHHHHHHhccCCCC-------CCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCc
Q 002362 167 IDEEEICGRVDEKNELLSKLLCESSD-------SPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETF 239 (930)
Q Consensus 167 ~~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 239 (930)
....++.|+++.++++.+.+..+-.. +-...+-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~-- 189 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG-- 189 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch--
Confidence 34457899999999998877432110 0123456999999999999999999883 33332 22221
Q ss_pred cHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh-cCceEEEEEeCccccC-----------ccChhhhhhhh---cc--
Q 002362 240 EEFRVAKAIVEALDGHESRLGEFQSLIKHIYESV-AGMCFLLVLDDVWDGN-----------YMKWEPFFHCL---KN-- 302 (930)
Q Consensus 240 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l---~~-- 302 (930)
..+ .....+ ........+.+.. ...+.+|++|+++.-. ......+...+ ..
T Consensus 190 --~~l----~~~~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 --SEL----VRKYIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred --HHH----HHHhhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 111 111100 1111222222222 3456799999996521 01111222222 21
Q ss_pred CCCCcEEEEEcCChHHH-hhh----CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCch
Q 002362 303 GLHRSKILVTTRKKSVA-SMM----GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLP 373 (930)
Q Consensus 303 ~~~gs~iivTtr~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glP 373 (930)
...+.+||.||...... ..+ .-...+++...+.++..++|..++.+..... .-+ ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cCC----HHHHHHHcCCCC
Confidence 12456788888754321 111 1245789999999999999998775433211 112 345667777654
No 105
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=3.3e-05 Score=88.17 Aligned_cols=198 Identities=14% Similarity=0.198 Sum_probs=112.6
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.+++|.+..++.|...+... .-...+.++|+.|+||||+|+.+++...-....+ ...+..-...+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHh
Confidence 46789888888888887532 2346788999999999999998887321100000 00111111111111
Q ss_pred HHhc-------C-CCCCCccHHHHHHHHHH-HhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCC-hHHH
Q 002362 250 EALD-------G-HESRLGEFQSLIKHIYE-SVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRK-KSVA 319 (930)
Q Consensus 250 ~~l~-------~-~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 319 (930)
.... . ......++.++...+.. -..+++-+||+|++.......+..|...+-.......+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 1100 0 00001111122111111 12356669999999877666667777777654445556555544 4444
Q ss_pred hhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCch-hHHHHHHhhh
Q 002362 320 SMM-GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLP-LAAKIIGSLM 383 (930)
Q Consensus 320 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glP-Lai~~~~~~l 383 (930)
..+ .....+++++++.++....+.+.+......-. .+.+..|++.++|.+ .|+..+..++
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id----~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD----PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 332 33568899999999999999886654322111 234677888999854 6777776554
No 106
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=3.2e-05 Score=89.26 Aligned_cols=197 Identities=13% Similarity=0.135 Sum_probs=112.9
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCC--eEEEEEeCCCccHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFD--KILWVCVSETFEEFRVAKA 247 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~ 247 (930)
.+++|.+..++.+...+... .-..-+.++|+.|+||||+|+.+++...-..... ...+- .+..-.--+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~g-----ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG-----RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHH
Confidence 46899999999999988642 2345788999999999999999977311100000 00000 0000011111
Q ss_pred HHHHhcC-----CCCCCccHHH---HHHHHHH-HhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEc-CChH
Q 002362 248 IVEALDG-----HESRLGEFQS---LIKHIYE-SVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTT-RKKS 317 (930)
Q Consensus 248 i~~~l~~-----~~~~~~~~~~---~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~ 317 (930)
|...-.. .......+++ +...+.. -..+++-++|+|++...+....+.+...+-....++.+|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 1111000 0001112222 2222211 123445589999998766556677777777666667765544 4444
Q ss_pred HHhhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHH
Q 002362 318 VASMM-GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKII 379 (930)
Q Consensus 318 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~ 379 (930)
+...+ .....+++.++++++....+.+.+-....... .+....|++.++|.+.-+...
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 43332 33568999999999999999887643322111 134677899999988655433
No 107
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=3.7e-05 Score=91.76 Aligned_cols=198 Identities=13% Similarity=0.140 Sum_probs=112.8
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.++||.+..++.|..++... .-...+.++|..|+||||+|+.+.+...-...... ..+..-..-+.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~-----ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSG-----RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHH
Confidence 46899999999999988642 23456889999999999999998773210000000 0000000011111
Q ss_pred HH-------hcCCCCCCccHHHHHH---HHH-HHhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEc-CChH
Q 002362 250 EA-------LDGHESRLGEFQSLIK---HIY-ESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTT-RKKS 317 (930)
Q Consensus 250 ~~-------l~~~~~~~~~~~~~~~---~l~-~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~ 317 (930)
.. +.........+++... .+. .-..++.-++|||+++......++.|+..+-.....+.+|++| ....
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 00 0000000111222222 111 1123555589999998887777788888887766666666555 4444
Q ss_pred HHhhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchh-HHHHHHhhh
Q 002362 318 VASMM-GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPL-AAKIIGSLM 383 (930)
Q Consensus 318 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPL-ai~~~~~~l 383 (930)
+...+ .....|++..++.++..+++.+.+-....... ......|++.++|.+. ++..+-.++
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id----~eal~lLa~~sgGdlR~Al~eLEKLi 226 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE----PGVLPLVIRAGGGSVRDSLSVLDQLL 226 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44333 33678999999999998888776532221111 2235678899999774 333433333
No 108
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.16 E-value=6.1e-05 Score=80.33 Aligned_cols=224 Identities=15% Similarity=0.113 Sum_probs=138.1
Q ss_pred cCCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHH
Q 002362 168 DEEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKA 247 (930)
Q Consensus 168 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 247 (930)
.+..++||+.|+..+.+++...-+ ....+-+.|.|.+|.|||.+...++.+..-...=..++++.+..-....+++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 356789999999999999976554 345678999999999999999999885322111135678887766678888888
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHhcCc--eEEEEEeCccccCccChhhhhhhhcc-CCCCcEEEEEcCCh--HHHh--
Q 002362 248 IVEALDGHESRLGEFQSLIKHIYESVAGM--CFLLVLDDVWDGNYMKWEPFFHCLKN-GLHRSKILVTTRKK--SVAS-- 320 (930)
Q Consensus 248 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~--~v~~-- 320 (930)
|...+...........+....+.++.+.. -+|+|+|.++.-....-..+...|-. .-+++|+|+.---. +...
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 88887221111112245555666665433 58999999865321122223333222 23456655432211 1111
Q ss_pred --hh-----CCcceEeCCCCChHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHHHHHcCCchhHHHHHHhhhcCCCCHHHH
Q 002362 321 --MM-----GSTNIISIKELTEEECRLLFNKIAFSDRPI-EEREKLEQIGRKIANKCKGLPLAAKIIGSLMRSKETEEEW 392 (930)
Q Consensus 321 --~~-----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~l~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w 392 (930)
.+ .....+..+|-+.++-.++|..+.-..... ..+..++-.|++++.-.|-+--|+.+.-+++.- -+.+|
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI--~E~e~ 383 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEI--AEIEK 383 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHH--HHHHH
Confidence 11 124578889999999999999887543332 223455566666666667777777776665521 13355
Q ss_pred HHH
Q 002362 393 RRI 395 (930)
Q Consensus 393 ~~~ 395 (930)
+..
T Consensus 384 r~~ 386 (529)
T KOG2227|consen 384 RKI 386 (529)
T ss_pred hhc
Confidence 544
No 109
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.13 E-value=2.6e-07 Score=90.42 Aligned_cols=210 Identities=21% Similarity=0.184 Sum_probs=113.6
Q ss_pred hhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccc----cccc-------ccccCCcccEEeccCCC
Q 002362 578 FRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIR----KLPD-------TLCELYNLQKLDISCCC 646 (930)
Q Consensus 578 ~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~----~lp~-------~i~~L~~L~~L~l~~~~ 646 (930)
+..+..+..+||++|... ......+...|.+-.+|+..+++.-... ++|+ .+-++++||+.+||.|.
T Consensus 26 l~~~d~~~evdLSGNtig--tEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 26 LEMMDELVEVDLSGNTIG--TEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHhhcceeEEeccCCccc--HHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 344788999999987543 1123456677788889999999874322 3443 35678999999999998
Q ss_pred CCcccccc----ccccCCcceEeecCcccccccCC-cCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeee
Q 002362 647 KLKELPQG----IGKLINMRHLLNYGTISLRYMPV-GIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGI 721 (930)
Q Consensus 647 ~~~~lp~~----i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~ 721 (930)
+-...|+. |++-+.|.||.+++| .+..+.. .||+ .|++|-. .....+-+.|+....-.|
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigk--al~~la~-------------nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGK--ALFHLAY-------------NKKAADKPKLEVVICGRN 167 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHH--HHHHHHH-------------HhhhccCCCceEEEeccc
Confidence 66666654 456678999998877 3222111 1221 1222210 001111222222221111
Q ss_pred ecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcc----c
Q 002362 722 RRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPW----M 797 (930)
Q Consensus 722 ~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~----~ 797 (930)
+ +++.+. ....+.+..-.+|+.+.+..|.+...+ ........+..+.+|+.|+|..|.++..-... +
T Consensus 168 R-lengs~--~~~a~~l~sh~~lk~vki~qNgIrpeg------v~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al 238 (388)
T COG5238 168 R-LENGSK--ELSAALLESHENLKEVKIQQNGIRPEG------VTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL 238 (388)
T ss_pred h-hccCcH--HHHHHHHHhhcCceeEEeeecCcCcch------hHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh
Confidence 1 122211 222223444467777777777665321 11223445556677777777777765421111 1
Q ss_pred ccccCccEEEeeCCCCC
Q 002362 798 MSLTNLRSLDLDDCENC 814 (930)
Q Consensus 798 ~~l~~L~~L~L~~~~~~ 814 (930)
...+.|+.|.+.+|.+.
T Consensus 239 ~~W~~lrEL~lnDClls 255 (388)
T COG5238 239 CEWNLLRELRLNDCLLS 255 (388)
T ss_pred cccchhhhccccchhhc
Confidence 13355777777777543
No 110
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=5.3e-05 Score=83.90 Aligned_cols=183 Identities=18% Similarity=0.253 Sum_probs=106.1
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHh--------cCCeEE-EEEeCCCcc
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKR--------KFDKIL-WVCVSETFE 240 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~F~~~~-wv~vs~~~~ 240 (930)
.+++|.+...+.+...+.. +.-...+.++|++|+||||+|+.+.+. +.. .|...+ -+......+
T Consensus 17 ~~iig~~~~~~~l~~~i~~-----~~~~~~~L~~G~~G~GKt~~a~~la~~--l~~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIEN-----NHLAQALLFCGPRGVGKTTCARILARK--INQPGYDDPNEDFSFNIFELDAASNNS 89 (367)
T ss_pred HhcCCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCCCCCCcceEEeccccCCC
Confidence 4689999999999998864 223568899999999999999998763 211 121111 111111111
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEc-CChHH
Q 002362 241 EFRVAKAIVEALDGHESRLGEFQSLIKHIYE-SVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTT-RKKSV 318 (930)
Q Consensus 241 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v 318 (930)
.. ++.++...... -..+++-++|+|++.......+..+...+......+.+|++| ....+
T Consensus 90 ~~------------------~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 90 VD------------------DIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred HH------------------HHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 11 11111111110 122445589999997655445666666665544455555555 33333
Q ss_pred Hhh-hCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchh-HHHHHHh
Q 002362 319 ASM-MGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPL-AAKIIGS 381 (930)
Q Consensus 319 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPL-ai~~~~~ 381 (930)
... ......+++.++++++....+.+.+...+..-. .+....+++.++|.+- ++..+-.
T Consensus 152 ~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr~~~~~lek 212 (367)
T PRK14970 152 IPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALRDALSIFDR 212 (367)
T ss_pred CHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHHHHHHHHHH
Confidence 222 223458999999999999998887654332111 2346778888998655 4444433
No 111
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.11 E-value=5.1e-06 Score=88.80 Aligned_cols=91 Identities=13% Similarity=0.040 Sum_probs=62.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCC--ccHHHHHHHHHHHhcCCCCCCc-----cH-HHHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSET--FEEFRVAKAIVEALDGHESRLG-----EF-QSLIK 267 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~-----~~-~~~~~ 267 (930)
.-..++|+|++|+|||||++.+++... .++|+..+||.+.+. .++.++++.|...+-....+.. .. ....+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 346799999999999999999999533 237999999999866 7899999998544322221111 11 11111
Q ss_pred HHHHH-hcCceEEEEEeCccc
Q 002362 268 HIYES-VAGMCFLLVLDDVWD 287 (930)
Q Consensus 268 ~l~~~-l~~kr~LlVlDdv~~ 287 (930)
..... -++++.+|++|++..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 22222 268999999999954
No 112
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.11 E-value=3.4e-06 Score=65.97 Aligned_cols=56 Identities=32% Similarity=0.491 Sum_probs=28.9
Q ss_pred CCCeeeccCCccccccc-ccccCCcccEEeccCCCCCcccc-ccccccCCcceEeecCc
Q 002362 613 HLRYLNLSNQSIRKLPD-TLCELYNLQKLDISCCCKLKELP-QGIGKLINMRHLLNYGT 669 (930)
Q Consensus 613 ~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~ 669 (930)
+|++|++++|.++.+|. .+..+++|++|++++|. +..+| ..|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 45555555555555543 34455555555555554 33333 23455555555555554
No 113
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=7.1e-05 Score=86.51 Aligned_cols=202 Identities=15% Similarity=0.183 Sum_probs=111.3
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEE-eCCCccHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVC-VSETFEEFRVAKAI 248 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i 248 (930)
.+++|.+..++.+...+... .-...+.++|+.|+||||+|+.+.+...-...++...|-. +...+..-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~-----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 46899999888888887532 2345588999999999999988876311111111001110 00111111111111
Q ss_pred HHHhcC-----CCCCCccHHHHHHHHHHH----hcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEE-EcCChHH
Q 002362 249 VEALDG-----HESRLGEFQSLIKHIYES----VAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILV-TTRKKSV 318 (930)
Q Consensus 249 ~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v 318 (930)
...-.. .......++++...+... ..+.+-++|+|+++.......+.+...+-.....+.+|+ |++...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 110000 000111123332222111 234555899999987665566778777777655566554 5444444
Q ss_pred Hhh-hCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchh-HHHHHH
Q 002362 319 ASM-MGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPL-AAKIIG 380 (930)
Q Consensus 319 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPL-ai~~~~ 380 (930)
... ......+++.+++.++....+.+.+-..+..-. .+.+..|++.++|..- |+..+-
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~----~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID----ADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHH
Confidence 433 334678999999999988888776543221111 2336778999999554 444443
No 114
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00011 Score=83.02 Aligned_cols=183 Identities=14% Similarity=0.185 Sum_probs=107.0
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHH--H-----------------hcCCeE
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEV--K-----------------RKFDKI 230 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~-----------------~~F~~~ 230 (930)
.+++|.+...+.+...+... .-...+.++|+.|+||||+|+.++...-- . +.|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~-----~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQ-----RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 46889999999999988642 23456778999999999999988763100 0 001111
Q ss_pred EEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEE
Q 002362 231 LWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYE-SVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKI 309 (930)
Q Consensus 231 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 309 (930)
+++..+.... ..+...+...+.. -..+++-++|+|+++.......+.+...+........+
T Consensus 91 ~eidaas~~g------------------vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNRG------------------IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCCC------------------HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 2221111111 1111222222211 12356669999999766555566677777665555555
Q ss_pred EEEc-CChHHHhh-hCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHH
Q 002362 310 LVTT-RKKSVASM-MGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKII 379 (930)
Q Consensus 310 ivTt-r~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~ 379 (930)
|++| +...+... ......+++.+++.++....+.+.+-..+.... .+.+..|++.++|.+..+...
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id----~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE----EKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 5544 44343322 233568999999999998888876643322111 133667888899976644433
No 115
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=8.1e-05 Score=86.38 Aligned_cols=194 Identities=17% Similarity=0.204 Sum_probs=109.8
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhc-CCe-EEEEE---eCCCccHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRK-FDK-ILWVC---VSETFEEFRV 244 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~-~~wv~---vs~~~~~~~~ 244 (930)
.+++|.+...+.+...+... .-...+.++|+.|+||||+|+.++...--... ..+ .+-.| ....+++.
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi-- 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII-- 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE--
Confidence 46899999999999988642 23556789999999999999998763100000 000 00000 00000000
Q ss_pred HHHHHHHhcC-CCCCCccHHHHHHHHHH-HhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEE-EEcCChHHHhh
Q 002362 245 AKAIVEALDG-HESRLGEFQSLIKHIYE-SVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKIL-VTTRKKSVASM 321 (930)
Q Consensus 245 ~~~i~~~l~~-~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~v~~~ 321 (930)
.+.+ ......++.++...+.. -..+++-++|+|++.......+..+...+-.......+| +|++...+...
T Consensus 91 ------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 91 ------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred ------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 0000 00011112233322221 123566699999998766666777777766655555544 55555555433
Q ss_pred -hCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchh-HHHHHH
Q 002362 322 -MGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPL-AAKIIG 380 (930)
Q Consensus 322 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPL-ai~~~~ 380 (930)
......+++.+++.++....+...+-..+.... .+.+..|++.++|.+- |+..+-
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id----~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENISYE----KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 334578999999999999888876533221111 1236778999988664 444443
No 116
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.07 E-value=5e-06 Score=87.67 Aligned_cols=236 Identities=21% Similarity=0.230 Sum_probs=153.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCC-eEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFD-KILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVA 274 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (930)
..+.+.++|.|||||||++-.+.. ++.-|. .+.+|....--+...+.-.....++..... .+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 578999999999999999998876 566674 566777766666666666666666654322 1223344556677
Q ss_pred CceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChHHHhhhCCcceEeCCCCChH-HHHHHHHHHHcCCCCc-
Q 002362 275 GMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKSVASMMGSTNIISIKELTEE-ECRLLFNKIAFSDRPI- 352 (930)
Q Consensus 275 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~~~- 352 (930)
++|.++|+||...- ...-..+...+-.+...-.|+.|+|.... ........+.+|+.. ++-++|...+......
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 88999999998442 11223344445555556678888886532 233456777777765 6888887665332221
Q ss_pred hhhHHHHHHHHHHHHHcCCchhHHHHHHhhhcCCCCH-------HHHHHHHhcccccchhhhhhHHHHHHHhhhcCChhH
Q 002362 353 EEREKLEQIGRKIANKCKGLPLAAKIIGSLMRSKETE-------EEWRRILNSGLWKVEEIEKDILSSLLLSYNDLPSKV 425 (930)
Q Consensus 353 ~~~~~l~~~~~~i~~~c~glPLai~~~~~~l~~~~~~-------~~w~~~l~~~~~~~~~~~~~i~~~l~lsy~~L~~~~ 425 (930)
.-...-.....+|.++.+|.|++|..+++..+.-... +.|...-+- ......-....++.+.+||.-|....
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhHH
Confidence 0111223457889999999999999999888654221 222221111 11111123557889999999999988
Q ss_pred HHHHhHhcCCCCCcccC
Q 002362 426 KKCFSYCAIFPKDYNIE 442 (930)
Q Consensus 426 k~cf~~~s~fp~~~~i~ 442 (930)
+--|.-++.|...|...
T Consensus 242 ~~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 242 RALFGRLAVFVGGFDLG 258 (414)
T ss_pred HHHhcchhhhhhhhccc
Confidence 88898888887766544
No 117
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.07 E-value=0.00027 Score=70.61 Aligned_cols=177 Identities=20% Similarity=0.217 Sum_probs=100.6
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.+|+|.++.++++.-++..... .++.+--+.++|++|.||||||.-+++. ....+. ++.........-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE----ecccccccChhhHHHHH
Confidence 4799999888888777754433 2567889999999999999999999984 332221 11111111111111222
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhc--------cCCCCcE-----------EE
Q 002362 250 EALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLK--------NGLHRSK-----------IL 310 (930)
Q Consensus 250 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~--------~~~~gs~-----------ii 310 (930)
.. |+... ++++|.+..-....-+-+.+++- ..++++| |=
T Consensus 99 t~---------------------Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 99 TN---------------------LEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred hc---------------------CCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 21 22222 45566665433221122222221 1123333 33
Q ss_pred EEcCChHHHhhhCC--cceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHH
Q 002362 311 VTTRKKSVASMMGS--TNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKII 379 (930)
Q Consensus 311 vTtr~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~ 379 (930)
.|||.-.+.+-+.. .-+.+++--+.+|-.++..+.+..-...-. ++-+.+|+++..|-|--+.-+
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~----~~~a~eIA~rSRGTPRIAnRL 223 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID----EEAALEIARRSRGTPRIANRL 223 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC----hHHHHHHHHhccCCcHHHHHH
Confidence 58887544333221 236788889999999999887743222111 234888999999999644333
No 118
>PLN03150 hypothetical protein; Provisional
Probab=98.06 E-value=5.6e-06 Score=97.53 Aligned_cols=109 Identities=17% Similarity=0.239 Sum_probs=88.0
Q ss_pred CccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccc-cccccc
Q 002362 553 RMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIR-KLPDTL 631 (930)
Q Consensus 553 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i 631 (930)
.++.|.|.++... ..++..+..+++|+.|+|++|... ..+|..++.+.+|++|+|++|.+. .+|..+
T Consensus 419 ~v~~L~L~~n~L~------g~ip~~i~~L~~L~~L~Ls~N~l~------g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l 486 (623)
T PLN03150 419 FIDGLGLDNQGLR------GFIPNDISKLRHLQSINLSGNSIR------GNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486 (623)
T ss_pred EEEEEECCCCCcc------ccCCHHHhCCCCCCEEECCCCccc------CcCChHHhCCCCCCEEECCCCCCCCCCchHH
Confidence 4677888877532 123445888999999999976432 468999999999999999999988 789999
Q ss_pred ccCCcccEEeccCCCCCcccccccccc-CCcceEeecCccccc
Q 002362 632 CELYNLQKLDISCCCKLKELPQGIGKL-INMRHLLNYGTISLR 673 (930)
Q Consensus 632 ~~L~~L~~L~l~~~~~~~~lp~~i~~L-~~L~~L~l~~~~~~~ 673 (930)
++|++|++|+|++|.....+|..+..+ .++..+++.+|..+.
T Consensus 487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 999999999999999777999988764 567788888875443
No 119
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=8.8e-05 Score=86.34 Aligned_cols=180 Identities=17% Similarity=0.185 Sum_probs=110.7
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHH---------------------HHhcCC
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEE---------------------VKRKFD 228 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---------------------~~~~F~ 228 (930)
.+++|.+...+.+..++.. +.-...+.++|+.|+||||+|+.+..... ...+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~-----~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIAT-----NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHc-----CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 4689999999999998864 22346688999999999999988776311 011233
Q ss_pred eEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCCCCcE
Q 002362 229 KILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSK 308 (930)
Q Consensus 229 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 308 (930)
. ..+..+....+.++. ++++++... -..+++=++|+|++...+...++.+...+......+.
T Consensus 92 ~-~~ld~~~~~~vd~Ir-~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 92 I-HELDAASNNSVDDIR-NLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred e-EEecccccCCHHHHH-HHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 2 222222221111111 111111100 0124445889999987766677788888877666676
Q ss_pred EEE-EcCChHHHhhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHH
Q 002362 309 ILV-TTRKKSVASMM-GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAA 376 (930)
Q Consensus 309 iiv-Ttr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai 376 (930)
+|+ ||+...+...+ .....+++.++++++....+.+.+-..+.... .+.+..|++.++|..--+
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~----~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE----PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 555 54544444332 33678999999999999888876643322111 123677889999966533
No 120
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1e-07 Score=94.41 Aligned_cols=58 Identities=24% Similarity=0.229 Sum_probs=27.2
Q ss_pred CCCCcceEEEeeccCCCCCCccc---ccccCccEEEeeCCCCCC--CCCCCCCCCCcceeeeccC
Q 002362 775 PPPNLRKLLIGSYRGKTVFPPWM---MSLTNLRSLDLDDCENCE--KLPPLGKLPSLEKLSISFM 834 (930)
Q Consensus 775 ~~~~L~~L~l~~~~~~~~~p~~~---~~l~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~L~~~ 834 (930)
.+|+|..|+++.|.-.. |..+ ..++.|++|.++.|.... .+-.+...|+|.+|++.+|
T Consensus 311 rcp~l~~LDLSD~v~l~--~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLK--NDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hCCceeeeccccccccC--chHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 34455555554443222 2222 245555666665554321 1112555666666666655
No 121
>PF14516 AAA_35: AAA-like domain
Probab=98.06 E-value=0.0013 Score=71.27 Aligned_cols=203 Identities=15% Similarity=0.132 Sum_probs=120.7
Q ss_pred ccCCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCC-----ccH
Q 002362 167 IDEEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSET-----FEE 241 (930)
Q Consensus 167 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~ 241 (930)
.+.+.+|.|...-+++.+.+.. .-..+.|.|+-.+|||+|...+.+. .+..=..++++.+... .+.
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~-------~G~~~~I~apRq~GKTSll~~l~~~--l~~~~~~~v~id~~~~~~~~~~~~ 78 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQ-------PGSYIRIKAPRQMGKTSLLLRLLER--LQQQGYRCVYIDLQQLGSAIFSDL 78 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhc-------CCCEEEEECcccCCHHHHHHHHHHH--HHHCCCEEEEEEeecCCCcccCCH
Confidence 3445678998677777777753 2458999999999999999999874 3332234667876542 245
Q ss_pred HHHHHHHH----HHhcCCCC-------CCccHHHHHHHHHHHh---cCceEEEEEeCccccCc--cChhhhhhhhcc---
Q 002362 242 FRVAKAIV----EALDGHES-------RLGEFQSLIKHIYESV---AGMCFLLVLDDVWDGNY--MKWEPFFHCLKN--- 302 (930)
Q Consensus 242 ~~~~~~i~----~~l~~~~~-------~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~--~~~~~l~~~l~~--- 302 (930)
...++.++ ++++.... ...........+.+++ .+++.+|++|+++.--. .-.+++...++.
T Consensus 79 ~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~ 158 (331)
T PF14516_consen 79 EQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYE 158 (331)
T ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHH
Confidence 54554444 44443221 0112223333344432 26899999999975321 111334444332
Q ss_pred -CC----CCcEEEEEcCChHH---Hhh----hCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcC
Q 002362 303 -GL----HRSKILVTTRKKSV---ASM----MGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCK 370 (930)
Q Consensus 303 -~~----~gs~iivTtr~~~v---~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~ 370 (930)
.. ..+-.++...+.+. ... +.....++|.+++.+|...|..++-.... .+. .++|...++
T Consensus 159 ~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~----~~~----~~~l~~~tg 230 (331)
T PF14516_consen 159 QRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS----QEQ----LEQLMDWTG 230 (331)
T ss_pred hcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC----HHH----HHHHHHHHC
Confidence 11 11122222222111 111 12245789999999999999988643211 111 778999999
Q ss_pred CchhHHHHHHhhhcCC
Q 002362 371 GLPLAAKIIGSLMRSK 386 (930)
Q Consensus 371 glPLai~~~~~~l~~~ 386 (930)
|+|.-+..++..+...
T Consensus 231 GhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 231 GHPYLVQKACYLLVEE 246 (331)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999999653
No 122
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=2.6e-06 Score=84.76 Aligned_cols=207 Identities=19% Similarity=0.128 Sum_probs=117.9
Q ss_pred hhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccccccccc-ccCCcccEEeccCCCCC-ccccccc
Q 002362 578 FRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPDTL-CELYNLQKLDISCCCKL-KELPQGI 655 (930)
Q Consensus 578 ~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~~~-~~lp~~i 655 (930)
-..+..++.|||.+|..+ .+.++-.-+.+|++|++|+|+.|.+...-.+. -.+.+|++|-|.++..- ...-..+
T Consensus 67 ~~~~~~v~elDL~~N~iS----dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l 142 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLIS----DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL 142 (418)
T ss_pred HHHhhhhhhhhcccchhc----cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhh
Confidence 456778888999887766 66666666678889999999988755322222 34678888888887621 2333445
Q ss_pred cccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCcccc---cccccCCCcCCeeeeecccCCCChhh
Q 002362 656 GKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACR---LESLRSLELLQVCGIRRLGNVTDVGE 732 (930)
Q Consensus 656 ~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~---l~~L~~L~~L~~~~~~~~~~~~~~~~ 732 (930)
..+++++.|.++.|+ ++.+.+-.+.... .... +..++++..++...++.
T Consensus 143 ~~lP~vtelHmS~N~--------------~rq~n~Dd~c~e~-----~s~~v~tlh~~~c~~~~w~~~~~l--------- 194 (418)
T KOG2982|consen 143 DDLPKVTELHMSDNS--------------LRQLNLDDNCIED-----WSTEVLTLHQLPCLEQLWLNKNKL--------- 194 (418)
T ss_pred hcchhhhhhhhccch--------------hhhhccccccccc-----cchhhhhhhcCCcHHHHHHHHHhH---------
Confidence 666777777666551 1111111111000 0000 11111111111111111
Q ss_pred hhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCC--CcccccccCccEEEeeC
Q 002362 733 AKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVF--PPWMMSLTNLRSLDLDD 810 (930)
Q Consensus 733 ~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--p~~~~~l~~L~~L~L~~ 810 (930)
-.-.+++.++-+..|.+.+. .--....++|.+.-|+++.+++.. . -+.+..++.|..|.+++
T Consensus 195 -----~r~Fpnv~sv~v~e~PlK~~----------s~ek~se~~p~~~~LnL~~~~ids-wasvD~Ln~f~~l~dlRv~~ 258 (418)
T KOG2982|consen 195 -----SRIFPNVNSVFVCEGPLKTE----------SSEKGSEPFPSLSCLNLGANNIDS-WASVDALNGFPQLVDLRVSE 258 (418)
T ss_pred -----HhhcccchheeeecCcccch----------hhcccCCCCCcchhhhhccccccc-HHHHHHHcCCchhheeeccC
Confidence 11235666776766655431 122345577777788888776433 1 11234789999999999
Q ss_pred CCCCCCCCC-------CCCCCCcceeeec
Q 002362 811 CENCEKLPP-------LGKLPSLEKLSIS 832 (930)
Q Consensus 811 ~~~~~~l~~-------l~~l~~L~~L~L~ 832 (930)
+++.+.+.. ++.||+++.|+=+
T Consensus 259 ~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 259 NPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CcccccccCCcceEEEEeeccceEEecCc
Confidence 998876543 6788888888765
No 123
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=5.2e-05 Score=88.54 Aligned_cols=194 Identities=14% Similarity=0.131 Sum_probs=111.7
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.+++|.+..++.+..++... .-...+.++|..|+||||+|+.+++. +.... +-.....++.....+.|.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~-----~i~~a~Lf~Gp~G~GKTtlA~~lA~~--l~c~~----~~~~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG-----RVAHAYLFTGPRGVGKTSTARILAKA--VNCTT----NDPKGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHH--hcCCC----CCCCCCCCccCHHHHHHh
Confidence 46899999999998888642 23456789999999999999999863 21000 000001111222233332
Q ss_pred HHhcCC-----CCCCccHHHH---HHHHHH-HhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCC-hHHH
Q 002362 250 EALDGH-----ESRLGEFQSL---IKHIYE-SVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRK-KSVA 319 (930)
Q Consensus 250 ~~l~~~-----~~~~~~~~~~---~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 319 (930)
...... .......++. ...+.. ...+++-++|+|++........+.+...+-.....+.+|++|.. ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 221110 0011122222 222211 11245668999999766555566677776665556666665543 3333
Q ss_pred hhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHH
Q 002362 320 SMM-GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKI 378 (930)
Q Consensus 320 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~ 378 (930)
..+ .....+++.+++.++....+.+.+...+.... .+.+..|++.++|.+..+..
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~----~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE----PGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 222 23568899999999998888877644322111 23477889999998865443
No 124
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.05 E-value=5e-06 Score=64.97 Aligned_cols=58 Identities=33% Similarity=0.508 Sum_probs=49.4
Q ss_pred CcceEEEcCCcccccCCCCCcccC-cccccCCCCCeeeccCCccccccc-ccccCCcccEEeccCCC
Q 002362 582 TSLRVLEFGDWARSLQLGPLTRIP-RNIERLVHLRYLNLSNQSIRKLPD-TLCELYNLQKLDISCCC 646 (930)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~ 646 (930)
++|++|++++| .+..+| ..+.++++|++|++++|.++.+|. .+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n-------~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-------KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-------TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-------CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 47899999954 466776 477899999999999999998865 67999999999999986
No 125
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.02 E-value=0.00012 Score=82.42 Aligned_cols=166 Identities=22% Similarity=0.211 Sum_probs=101.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcC--CeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKF--DKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVA 274 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (930)
...+.|+|..|+|||.|++.+++. +.... ..+++++. .++...+...+.... .....+.+.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~-------~~~~~~~~~~~ 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYMSG------DEFARKAVDILQKTH-------KEIEQFKNEIC 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh-------hHHHHHHHHhc
Confidence 456899999999999999999983 33322 23444433 456666666654311 11223333333
Q ss_pred CceEEEEEeCccccCc-cCh-hhhhhhhcc-CCCCcEEEEEcCCh---------HHHhhhCCcceEeCCCCChHHHHHHH
Q 002362 275 GMCFLLVLDDVWDGNY-MKW-EPFFHCLKN-GLHRSKILVTTRKK---------SVASMMGSTNIISIKELTEEECRLLF 342 (930)
Q Consensus 275 ~kr~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 342 (930)
..-+||+||+..... ..| +.+...+.. ...|..||+|+... .+...+...-++++++++.++..+++
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 234889999965332 122 234333332 12345688887643 23333455668899999999999999
Q ss_pred HHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHH
Q 002362 343 NKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIG 380 (930)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~ 380 (930)
.+++-..... ..--+++..-|++.++|.|-.+..+.
T Consensus 285 ~~~~~~~gl~--~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 285 KKEIKNQNIK--QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHhcCCC--CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 9887432210 01113567889999999998775554
No 126
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.02 E-value=0.00025 Score=79.55 Aligned_cols=158 Identities=20% Similarity=0.208 Sum_probs=92.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcC--CeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKF--DKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVA 274 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (930)
...+.|+|..|+|||.|++.+++. ..... ..++|+++ .++..++...+... ..+.. .+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~~----~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEEF----KEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHHH----HHHHH
Confidence 456899999999999999999994 43333 24556643 33444555554321 22222 23332
Q ss_pred CceEEEEEeCccccCccC-h-hhhhhhhcc-CCCCcEEEEEcCCh-H--------HHhhhCCcceEeCCCCChHHHHHHH
Q 002362 275 GMCFLLVLDDVWDGNYMK-W-EPFFHCLKN-GLHRSKILVTTRKK-S--------VASMMGSTNIISIKELTEEECRLLF 342 (930)
Q Consensus 275 ~kr~LlVlDdv~~~~~~~-~-~~l~~~l~~-~~~gs~iivTtr~~-~--------v~~~~~~~~~~~l~~L~~~~~~~lf 342 (930)
+ .-+|||||+....... + +.+...+.. ...|..||+||... . +...+.....+++++.+.++...++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 2388999997532221 1 223333322 12345577777642 1 2222333457999999999999999
Q ss_pred HHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHH
Q 002362 343 NKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAA 376 (930)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai 376 (930)
.+.+-.....- + +++...|++.+.|.+-.+
T Consensus 278 ~~~~~~~~~~l-~---~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 278 QKKAEEEGLEL-P---DEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHHcCCCC-C---HHHHHHHHHhcCCCHHHH
Confidence 98875432211 1 345677888888766543
No 127
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.00 E-value=2.2e-05 Score=85.45 Aligned_cols=119 Identities=11% Similarity=0.125 Sum_probs=77.1
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.++++.++..+.+...|.. .+.+.++|++|+|||++|+.+++.......|+.+.||.+++.++..++...+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 4578889999999999863 34688899999999999999988543345678899999999888777654221
Q ss_pred HHhcCCCCCCccH-HHHHHHHHHHh--cCceEEEEEeCccccCccC-hhhhhhhh
Q 002362 250 EALDGHESRLGEF-QSLIKHIYESV--AGMCFLLVLDDVWDGNYMK-WEPFFHCL 300 (930)
Q Consensus 250 ~~l~~~~~~~~~~-~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~-~~~l~~~l 300 (930)
.....-.-. .-..+.+.+.. .++++++|+|++...+.+. +..+...+
T Consensus 247 ----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lL 297 (459)
T PRK11331 247 ----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLM 297 (459)
T ss_pred ----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhc
Confidence 111010000 11122222222 2468999999998765433 34444433
No 128
>CHL00181 cbbX CbbX; Provisional
Probab=97.99 E-value=0.00029 Score=74.25 Aligned_cols=135 Identities=17% Similarity=0.135 Sum_probs=73.6
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCce
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMC 277 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (930)
..+.++|.+|+||||+|+.+++.....+.-...-|+.++. .+ +...+.+.. .......+.+ ..+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~-----~~~~~~~l~~-a~g-- 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHT-----APKTKEVLKK-AMG-- 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccc-----hHHHHHHHHH-ccC--
Confidence 4588999999999999999987321111111222555542 12 222221111 1111122222 223
Q ss_pred EEEEEeCcccc---------CccChhhhhhhhccCCCCcEEEEEcCChHHHhhh--------CCcceEeCCCCChHHHHH
Q 002362 278 FLLVLDDVWDG---------NYMKWEPFFHCLKNGLHRSKILVTTRKKSVASMM--------GSTNIISIKELTEEECRL 340 (930)
Q Consensus 278 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~--------~~~~~~~l~~L~~~~~~~ 340 (930)
-+|++|++..- ..+....+...+.....+.+||+++....+.... .....+++++++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 48999999642 0111223444444444556777777654432211 114578999999999999
Q ss_pred HHHHHHcC
Q 002362 341 LFNKIAFS 348 (930)
Q Consensus 341 lf~~~~~~ 348 (930)
++...+-.
T Consensus 204 I~~~~l~~ 211 (287)
T CHL00181 204 IAKIMLEE 211 (287)
T ss_pred HHHHHHHH
Confidence 98887643
No 129
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.97 E-value=8.7e-05 Score=76.29 Aligned_cols=192 Identities=17% Similarity=0.173 Sum_probs=115.1
Q ss_pred hhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHH--h--cCCeEEEEEeCCCccHHHHHHHHHHHh
Q 002362 177 DEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVK--R--KFDKILWVCVSETFEEFRVAKAIVEAL 252 (930)
Q Consensus 177 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~--~F~~~~wv~vs~~~~~~~~~~~i~~~l 252 (930)
+.++++.+++..+.. ....-+.|||..|.|||++++++...--.. . .--.++.|......+...++..|+.++
T Consensus 44 ~~L~~L~~Ll~~P~~---~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 44 EALDRLEELLEYPKR---HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHHhCCcc---cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 456666666665443 356779999999999999999998631100 0 011477788889999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHHHhcC-ceEEEEEeCcccc------CccChhhhhhhhccCCCCcEEEEEcCChHHHhhhCC-
Q 002362 253 DGHESRLGEFQSLIKHIYESVAG-MCFLLVLDDVWDG------NYMKWEPFFHCLKNGLHRSKILVTTRKKSVASMMGS- 324 (930)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~- 324 (930)
+.+........++.......++. +-=+||+|++.+. .+...-.....|.+.-.=+-|.+-|+.- ...+.+
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A--~~al~~D 198 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREA--YRALRTD 198 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHH--HHHhccC
Confidence 98876666666665555555532 2238999999652 1112222233333333345566655532 222221
Q ss_pred ------cceEeCCCCCh-HHHHHHHHHHH--cCCCCchhhHHHHHHHHHHHHHcCCchh
Q 002362 325 ------TNIISIKELTE-EECRLLFNKIA--FSDRPIEEREKLEQIGRKIANKCKGLPL 374 (930)
Q Consensus 325 ------~~~~~l~~L~~-~~~~~lf~~~~--~~~~~~~~~~~l~~~~~~i~~~c~glPL 374 (930)
..++.+.+-.. +|...|+.... ..-..+ ..-...++++.|...++|+.=
T Consensus 199 ~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~-S~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 199 PQLASRFEPFELPRWELDEEFRRLLASFERALPLRKP-SNLASPELARRIHERSEGLIG 256 (302)
T ss_pred HHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHHHcCCchH
Confidence 33555655543 44555554322 111111 112335678999999999763
No 130
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.97 E-value=9.2e-05 Score=89.70 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=88.5
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhc------CCeEEE-EEeCCCccHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRK------FDKILW-VCVSETFEEF 242 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~w-v~vs~~~~~~ 242 (930)
+.++||+.++++++..|... ...-+.++|.+|+||||+|+.++.. +... .+..+| +..+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~------~~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~----- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR------RQNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGL----- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC------CcCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhh-----
Confidence 46899999999999998753 2334569999999999999999883 3221 123333 22211
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHh--cCceEEEEEeCccccC-------ccChh-hhhhhhccCCCCcEEEEE
Q 002362 243 RVAKAIVEALDGHESRLGEFQSLIKHIYESV--AGMCFLLVLDDVWDGN-------YMKWE-PFFHCLKNGLHRSKILVT 312 (930)
Q Consensus 243 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~-------~~~~~-~l~~~l~~~~~gs~iivT 312 (930)
+........+.++....+.+.+ .+++.+|++|++..-. ..+-. .++..+..+ .-++|-|
T Consensus 254 ---------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~Iga 322 (852)
T TIGR03345 254 ---------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAA 322 (852)
T ss_pred ---------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEe
Confidence 0000011122333333333333 2568999999996532 11111 244444333 3456666
Q ss_pred cCChHHHhhh-------CCcceEeCCCCChHHHHHHHHHH
Q 002362 313 TRKKSVASMM-------GSTNIISIKELTEEECRLLFNKI 345 (930)
Q Consensus 313 tr~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 345 (930)
|...+....+ .-.+.+.+++++.++..+++...
T Consensus 323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 6654332211 22458999999999999997544
No 131
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00022 Score=80.64 Aligned_cols=180 Identities=13% Similarity=0.131 Sum_probs=110.6
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHH--Hh----------------cCC-eE
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEV--KR----------------KFD-KI 230 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~----------------~F~-~~ 230 (930)
.+++|-+...+.+...+.. +.-.....++|+.|+||||+|+.+.+..-- .. .+. .+
T Consensus 14 deiiGqe~v~~~L~~~I~~-----grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDN-----NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHc-----CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 4689999999999888853 223456789999999999999987763100 00 011 11
Q ss_pred EEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH----hcCceEEEEEeCccccCccChhhhhhhhccCCCC
Q 002362 231 LWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYES----VAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHR 306 (930)
Q Consensus 231 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 306 (930)
+.+..+... ..+++...+... ..+++-++|+|++..........+...+-.....
T Consensus 89 ~eldaas~~---------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 89 IEMDAASNR---------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred EEecccccc---------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 222111111 122222222210 1245568999999887766677777777666566
Q ss_pred cEEEEEcCCh-HHHhh-hCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHH
Q 002362 307 SKILVTTRKK-SVASM-MGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKII 379 (930)
Q Consensus 307 s~iivTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~ 379 (930)
+++|++|.+. .+... ......+++.+++.++....+.+.+-..+.... .+.+..|++.++|.+.-+..+
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~----~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE----PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHH
Confidence 7766666543 22221 223568999999999999988876643332111 234678999999988655443
No 132
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.96 E-value=5e-05 Score=84.07 Aligned_cols=179 Identities=16% Similarity=0.154 Sum_probs=98.5
Q ss_pred cCCceecchhhHHHHHHHhccCCCC-------CCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCcc
Q 002362 168 DEEEICGRVDEKNELLSKLLCESSD-------SPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFE 240 (930)
Q Consensus 168 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 240 (930)
..+++.|+++.++++.+.+..+-.. +-...+-|.++|++|+|||++|+.+++. .... |+.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh---
Confidence 3457899999999998876322110 0234567999999999999999999883 3222 333321
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh-cCceEEEEEeCccccC-----------ccChhhhhhhhcc-----C
Q 002362 241 EFRVAKAIVEALDGHESRLGEFQSLIKHIYESV-AGMCFLLVLDDVWDGN-----------YMKWEPFFHCLKN-----G 303 (930)
Q Consensus 241 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~-----~ 303 (930)
..+ .....+ +.......+.+.. ...+.+|+|||++.-. ......+...+.. .
T Consensus 199 -~~l----~~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 -SEL----VQKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred -HHH----hHhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 111 111111 1112222222222 3456799999996421 0111123333321 1
Q ss_pred CCCcEEEEEcCChHHHh-hh-C---CcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCc
Q 002362 304 LHRSKILVTTRKKSVAS-MM-G---STNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGL 372 (930)
Q Consensus 304 ~~gs~iivTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~gl 372 (930)
..+..||.||....... .+ . -...+++.+.+.++..++|+.+..+.... ..-+ ...+++.+.|.
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVD----LEELAELTEGA 336 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCC----HHHHHHHcCCC
Confidence 23566777777543221 11 1 24579999999999999999876433211 1112 34456666664
No 133
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.96 E-value=3.9e-07 Score=94.87 Aligned_cols=266 Identities=19% Similarity=0.170 Sum_probs=126.8
Q ss_pred CCCCeeeccCCc---ccccccccccCCcccEEeccCCCCCcc--ccccccccCCcceEeecCcccccccCC--cCCCCCC
Q 002362 612 VHLRYLNLSNQS---IRKLPDTLCELYNLQKLDISCCCKLKE--LPQGIGKLINMRHLLNYGTISLRYMPV--GIGRLTS 684 (930)
Q Consensus 612 ~~Lr~L~L~~~~---i~~lp~~i~~L~~L~~L~l~~~~~~~~--lp~~i~~L~~L~~L~l~~~~~~~~~p~--~i~~l~~ 684 (930)
-.|+.|.++|+. ...+-....+++++++|.+.+|..+.. +-..-..+.+|+||++..|..++..-- -...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 458888888875 334555567899999999999986543 222225788999999998766553321 1233566
Q ss_pred CCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCcc
Q 002362 685 LRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNE 764 (930)
Q Consensus 685 L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~ 764 (930)
|+.|+++.+..-.+ ..+......++.++.+...++...+ .++....-..+..+..+++..+..-+
T Consensus 218 L~~lNlSwc~qi~~--~gv~~~~rG~~~l~~~~~kGC~e~~-----le~l~~~~~~~~~i~~lnl~~c~~lT-------- 282 (483)
T KOG4341|consen 218 LKYLNLSWCPQISG--NGVQALQRGCKELEKLSLKGCLELE-----LEALLKAAAYCLEILKLNLQHCNQLT-------- 282 (483)
T ss_pred HHHhhhccCchhhc--CcchHHhccchhhhhhhhccccccc-----HHHHHHHhccChHhhccchhhhcccc--------
Confidence 66666654433221 0001112222222222222211110 01111111112222233322221111
Q ss_pred chHHHhhcCCCCCCcceEEEeeccCCCCCCcc-cc-cccCccEEEeeCCCCCCCCC--CC-CCCCCcceeeeccCcCceE
Q 002362 765 DDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPW-MM-SLTNLRSLDLDDCENCEKLP--PL-GKLPSLEKLSISFMCSVKR 839 (930)
Q Consensus 765 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~-~~-~l~~L~~L~L~~~~~~~~l~--~l-~~l~~L~~L~L~~~~~l~~ 839 (930)
++.+...-..+..|+.|+.+++...+..+-| ++ +.++|+.|.++.|....+.- .+ .+.+.|+.|++.+|..+.+
T Consensus 283 -D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 283 -DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD 361 (483)
T ss_pred -chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh
Confidence 1112222223344455554444332211111 11 34445555555544322211 11 2334444444443321100
Q ss_pred eCCccccCcccccCccccceeeccccccccceeeeccCCccCCC-----CCCCCCCCCccEEEEecCchhhHHhhcC
Q 002362 840 VDNEILGIEITIAFPKLKSLTISWIIMPRLSSLTFDSCPKLKAL-----PDHFHQTTTLKEFNIGWNCGLLEKRYRK 911 (930)
Q Consensus 840 ~~~~~~~~~~~~~f~~L~~L~l~~~~lp~L~~L~l~~c~~L~~l-----p~~l~~l~~L~~L~l~~nc~~l~~~~~~ 911 (930)
- .+.+|-. .+|.|+.|.+++|..+++- ..+-.++..|..+.+++ ||.+++...+
T Consensus 362 ~-----------tL~sls~------~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n-~p~i~d~~Le 420 (483)
T KOG4341|consen 362 G-----------TLASLSR------NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDN-CPLITDATLE 420 (483)
T ss_pred h-----------hHhhhcc------CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecC-CCCchHHHHH
Confidence 0 0000000 5889999999999776654 33345677899999999 9998886644
No 134
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.95 E-value=0.0003 Score=70.02 Aligned_cols=125 Identities=19% Similarity=0.258 Sum_probs=73.7
Q ss_pred ccCCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHH
Q 002362 167 IDEEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAK 246 (930)
Q Consensus 167 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 246 (930)
++-+.++|-+.+++.+++-...=-. +....-+.++|..|.|||++++.+.+. ....= .--|.|..
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~--y~~~G--LRlIev~k--------- 88 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNE--YADQG--LRLIEVSK--------- 88 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHH--HhhcC--ceEEEECH---------
Confidence 3446799999998888775432222 234567888999999999999999873 32211 11122221
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccc-cCccChhhhhhhhccCC----CCcEEEEEcCChHH
Q 002362 247 AIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWD-GNYMKWEPFFHCLKNGL----HRSKILVTTRKKSV 318 (930)
Q Consensus 247 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~----~gs~iivTtr~~~v 318 (930)
.+..++..+...++ -...||+|++||+.= +....+..+++.|-.+- ....|..||..++.
T Consensus 89 ----------~~L~~l~~l~~~l~--~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 89 ----------EDLGDLPELLDLLR--DRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred ----------HHhccHHHHHHHHh--cCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 12233444444443 246789999999843 22345666777765431 23344556655543
No 135
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.93 E-value=0.00029 Score=78.89 Aligned_cols=134 Identities=22% Similarity=0.237 Sum_probs=80.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGM 276 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (930)
...+.|+|+.|+|||+|++.+++. +......+++++. ..+...+...+... .. ..+++.+. .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~------~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS------ELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH------HHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 456899999999999999999984 3333334555543 33444555554321 11 22333333 3
Q ss_pred eEEEEEeCccccCccCh--hhhhhhhcc-CCCCcEEEEEcCCh---------HHHhhhCCcceEeCCCCChHHHHHHHHH
Q 002362 277 CFLLVLDDVWDGNYMKW--EPFFHCLKN-GLHRSKILVTTRKK---------SVASMMGSTNIISIKELTEEECRLLFNK 344 (930)
Q Consensus 277 r~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 344 (930)
.-+|++||+.......| +.+...+.. ...|..||+||... .+...+...-.+++.+++.++...++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 34888999965432222 223333221 11345688888542 1223344456899999999999999988
Q ss_pred HHcC
Q 002362 345 IAFS 348 (930)
Q Consensus 345 ~~~~ 348 (930)
++-.
T Consensus 283 k~~~ 286 (445)
T PRK12422 283 KAEA 286 (445)
T ss_pred HHHH
Confidence 7754
No 136
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00018 Score=80.90 Aligned_cols=184 Identities=16% Similarity=0.173 Sum_probs=107.3
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHH---------------------hcCC
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVK---------------------RKFD 228 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~F~ 228 (930)
.+++|.+..++.+...+... .-...+.++|+.|+||||+|+.+.+...-. .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~-----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN-----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 46899999999999888632 234668899999999999999887631100 0111
Q ss_pred eEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCceEEEEEeCccccCccChhhhhhhhccCCCCc
Q 002362 229 KILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYE-SVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRS 307 (930)
Q Consensus 229 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 307 (930)
.+++........ .++.++...+.. ...+.+-++|+|++........+.+...+-......
T Consensus 92 -~~~i~g~~~~gi------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASHRGI------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeeccccCCH------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 111111111111 111111111111 122556689999997655445566777776655566
Q ss_pred EEEEEcC-ChHHHhh-hCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCch-hHHHHHHh
Q 002362 308 KILVTTR-KKSVASM-MGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLP-LAAKIIGS 381 (930)
Q Consensus 308 ~iivTtr-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glP-Lai~~~~~ 381 (930)
.+|++|. ...+... ......+++.++++++....+.+.+-..+.... .+.+..|++.++|.+ .|+..+-.
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~----~~al~~L~~~s~gdlr~a~~~Lek 225 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS----REALLPIARAAQGSLRDAESLYDY 225 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 6666654 3333222 233568999999999998888876543221111 234677899999965 44444433
No 137
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.92 E-value=0.0021 Score=69.74 Aligned_cols=167 Identities=20% Similarity=0.191 Sum_probs=97.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAG 275 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 275 (930)
....+.|+|..|.|||-|++.+.+ ....+......++++. +....+++..+... -...+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~s----e~f~~~~v~a~~~~---------~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLTS----EDFTNDFVKALRDN---------EMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEeccH----HHHHHHHHHHHHhh---------hHHHHHHhh--
Confidence 577899999999999999999999 5556665444444432 33344444443221 122333433
Q ss_pred ceEEEEEeCccccC-ccChh-hhhhhhcc-CCCCcEEEEEcCCh---------HHHhhhCCcceEeCCCCChHHHHHHHH
Q 002362 276 MCFLLVLDDVWDGN-YMKWE-PFFHCLKN-GLHRSKILVTTRKK---------SVASMMGSTNIISIKELTEEECRLLFN 343 (930)
Q Consensus 276 kr~LlVlDdv~~~~-~~~~~-~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 343 (930)
.-=++++||++--. .+.|+ .+...+.. ...|-.||+|++.. ...+.++..-.+++.+++.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 22388999996522 11232 23333322 12334799998643 344556667799999999999999999
Q ss_pred HHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHH
Q 002362 344 KIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKII 379 (930)
Q Consensus 344 ~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~ 379 (930)
+++....-.-...-..-++..+-+-..-+.=|+..+
T Consensus 255 kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l 290 (408)
T COG0593 255 KKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRL 290 (408)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 876544332223333334444443333344444333
No 138
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.0003 Score=82.00 Aligned_cols=196 Identities=16% Similarity=0.158 Sum_probs=110.9
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.+++|.+...+.+..++... .-..-+.++|..|+||||+|+.+++..-- ...+.. ....+......+.|.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~-----rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c-~~~~~~----~~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISN-----RIAPAYLFTGPRGTGKTSSARILAKSLNC-LNSDKP----TPEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCChHHHHHHHHHHhcC-CCcCCC----CCCCCcccHHHHHHh
Confidence 46889999999998888642 12356789999999999999999874111 001000 001111122222222
Q ss_pred HHhcC-----CCCCCccHHHHHHHHHHH----hcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEE-EcCChHHH
Q 002362 250 EALDG-----HESRLGEFQSLIKHIYES----VAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILV-TTRKKSVA 319 (930)
Q Consensus 250 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v~ 319 (930)
..... .......+++..+.+... ..+++-++|+|+++......+..+...+-.......+|+ |+....+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 21110 000111222222222111 124556899999987666667777777776555555554 44434443
Q ss_pred hhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHH
Q 002362 320 SMM-GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKII 379 (930)
Q Consensus 320 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~ 379 (930)
..+ .....+++.+++.++....+.+.+........ .+.+..|++.++|.+..+..+
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 322 33568899999999988888776543221111 123678889999977654433
No 139
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=1.2e-05 Score=57.41 Aligned_cols=40 Identities=35% Similarity=0.519 Sum_probs=27.3
Q ss_pred CCCCeeeccCCcccccccccccCCcccEEeccCCCCCcccc
Q 002362 612 VHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELP 652 (930)
Q Consensus 612 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp 652 (930)
++|++|++++|.|+.+|..+++|++|++|++++|. +..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 35777777777777777777777777777777776 44443
No 140
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.90 E-value=0.00013 Score=79.08 Aligned_cols=148 Identities=16% Similarity=0.147 Sum_probs=86.4
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.+++|.++..+.+..++.. +.-..++.++|++|+||||+|+.+++. ... ....+..+. .... ..++.+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~-----~~~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~~~~-~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKK-----GRIPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-CRID-FVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhc-----CCCCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-ccHH-HHHHHH
Confidence 5689999999999998863 224568888999999999999999873 211 233444443 1111 111111
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCcccc-CccChhhhhhhhccCCCCcEEEEEcCChH-HHhh-hCCcc
Q 002362 250 EALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDG-NYMKWEPFFHCLKNGLHRSKILVTTRKKS-VASM-MGSTN 326 (930)
Q Consensus 250 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~~ 326 (930)
..+... ..+.+.+-++|+||+... .......+...+.....++++|+||.... +... .+...
T Consensus 89 ~~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 89 TRFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HHHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 111000 001133458899999765 22222334444555556778888887542 1111 12234
Q ss_pred eEeCCCCChHHHHHHHHH
Q 002362 327 IISIKELTEEECRLLFNK 344 (930)
Q Consensus 327 ~~~l~~L~~~~~~~lf~~ 344 (930)
.+.+...+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 677777888887766554
No 141
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.90 E-value=0.00041 Score=73.23 Aligned_cols=134 Identities=16% Similarity=0.135 Sum_probs=73.5
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCce
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMC 277 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (930)
.-+.++|++|+||||+|+.++....-........|+.++. .+ +...+.+.. .......+.+ .. .
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~-a~--~ 122 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKR-AM--G 122 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHH-cc--C
Confidence 3688999999999999988876311111111123555542 12 222222211 1111222222 22 2
Q ss_pred EEEEEeCcccc---------CccChhhhhhhhccCCCCcEEEEEcCChHHHhhh--C------CcceEeCCCCChHHHHH
Q 002362 278 FLLVLDDVWDG---------NYMKWEPFFHCLKNGLHRSKILVTTRKKSVASMM--G------STNIISIKELTEEECRL 340 (930)
Q Consensus 278 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~--~------~~~~~~l~~L~~~~~~~ 340 (930)
-+|+||++..- ..+.+..+...+.....+.+||+++......... . ....+++++++.+|..+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 58899999632 1112344555555555566777777654322211 1 13578999999999999
Q ss_pred HHHHHHc
Q 002362 341 LFNKIAF 347 (930)
Q Consensus 341 lf~~~~~ 347 (930)
++...+-
T Consensus 203 I~~~~l~ 209 (284)
T TIGR02880 203 IAGLMLK 209 (284)
T ss_pred HHHHHHH
Confidence 9888653
No 142
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00017 Score=83.73 Aligned_cols=198 Identities=14% Similarity=0.184 Sum_probs=110.4
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.+++|.+...+.+...+... .-...+.++|+.|+||||+|+.+++..--....+ ...+.....-..|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHh
Confidence 46899999999999888642 2345678999999999999998876311000000 00000111111111
Q ss_pred HH-------hcCC-CCCCccHHHHHHHHHH-HhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEE-EEcCChHHH
Q 002362 250 EA-------LDGH-ESRLGEFQSLIKHIYE-SVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKIL-VTTRKKSVA 319 (930)
Q Consensus 250 ~~-------l~~~-~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~v~ 319 (930)
.. +.+. .....++.++...+.. -..+++-++|+|+++..+....+.+...+-.....+.+| +||....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00 0000 0111122222222211 113445589999998766566677777776655566655 455555554
Q ss_pred hhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCch-hHHHHHHhhh
Q 002362 320 SMM-GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLP-LAAKIIGSLM 383 (930)
Q Consensus 320 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glP-Lai~~~~~~l 383 (930)
..+ .....+++.+++.++....+...+-..+..-. .+....|++.++|.. .|+..+-.++
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~----~~al~~la~~a~G~lr~al~~Ldqli 225 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS----DAALALVARKGDGSMRDSLSTLDQVL 225 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 332 33568899999999988888765533221111 223677888998865 4555544433
No 143
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.90 E-value=3.4e-05 Score=83.11 Aligned_cols=60 Identities=22% Similarity=0.277 Sum_probs=25.7
Q ss_pred CCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccC
Q 002362 612 VHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMP 676 (930)
Q Consensus 612 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p 676 (930)
.++++|++++|.++.+|. -..+|++|.+++|..+..+|..+ ..+|++|.+.+|..+..+|
T Consensus 52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 344444444444444441 11234444454444444444333 1345555555443333343
No 144
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.89 E-value=2.2e-06 Score=96.46 Aligned_cols=102 Identities=25% Similarity=0.309 Sum_probs=51.1
Q ss_pred hhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccc
Q 002362 578 FRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGK 657 (930)
Q Consensus 578 ~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~ 657 (930)
+..++.|..|++.+| .+..+...+..+.+|++|+|++|.|+.+.. +..+..|+.|++++|. +..++. +..
T Consensus 91 l~~~~~l~~l~l~~n-------~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~-i~~~~~-~~~ 160 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-------KIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNL-ISDISG-LES 160 (414)
T ss_pred cccccceeeeecccc-------chhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCc-chhccC-Ccc
Confidence 344555666666633 233333335556666666666666655532 4455556666666665 444332 444
Q ss_pred cCCcceEeecCcccccccCCc-CCCCCCCCcCCc
Q 002362 658 LINMRHLLNYGTISLRYMPVG-IGRLTSLRTLDE 690 (930)
Q Consensus 658 L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~ 690 (930)
+++|+.+++++|. +..++.. ...+.+|+.+.+
T Consensus 161 l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l 193 (414)
T KOG0531|consen 161 LKSLKLLDLSYNR-IVDIENDELSELISLEELDL 193 (414)
T ss_pred chhhhcccCCcch-hhhhhhhhhhhccchHHHhc
Confidence 5566666665552 2222221 244444554443
No 145
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00031 Score=80.80 Aligned_cols=192 Identities=14% Similarity=0.086 Sum_probs=110.4
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.+++|-+..++.+..++.. +.-...+.++|+.|+||||+|+.+++..--...... ..+..-.+. +.|.
T Consensus 16 ~diiGqe~iv~~L~~~i~~-----~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIES-----NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHH
Confidence 4689999999999998864 224557889999999999999999873111100000 000000000 1111
Q ss_pred HHhcC-----CCCCCccHHHHHHH---HHH-HhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcC-ChHHH
Q 002362 250 EALDG-----HESRLGEFQSLIKH---IYE-SVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTR-KKSVA 319 (930)
Q Consensus 250 ~~l~~-----~~~~~~~~~~~~~~---l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~ 319 (930)
..-.. ........++.... +.. -..+++-++|+|++...+...++.+...+........+|++|. ...+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 10000 00001122222221 111 1235556899999987766667777777776556666665554 34443
Q ss_pred hhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHH
Q 002362 320 SMM-GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAK 377 (930)
Q Consensus 320 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~ 377 (930)
..+ .....+++.+++.++....+.+.+...+..-. .+.+..|++.++|.+-.+.
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id----~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE----DEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 322 33567999999999998888877644332111 2346678889999775443
No 146
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.88 E-value=0.0011 Score=75.63 Aligned_cols=155 Identities=15% Similarity=0.185 Sum_probs=91.1
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcC--CeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKF--DKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAG 275 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 275 (930)
..+.|+|..|+|||.|++.+++. ....+ ..++|++. .++..++...+... ..+. +.+.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~~~----f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KGDS----FRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cHHH----HHHHhhc
Confidence 45899999999999999999994 43332 24556554 33444444443221 1222 2233332
Q ss_pred ceEEEEEeCccccCc-cChh-hhhhhhcc-CCCCcEEEEEcCCh---------HHHhhhCCcceEeCCCCChHHHHHHHH
Q 002362 276 MCFLLVLDDVWDGNY-MKWE-PFFHCLKN-GLHRSKILVTTRKK---------SVASMMGSTNIISIKELTEEECRLLFN 343 (930)
Q Consensus 276 kr~LlVlDdv~~~~~-~~~~-~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 343 (930)
- =+|||||+..... ..|. .+...+.. ...|..|||||+.. .+...+...-.++|++.+.+.-.+++.
T Consensus 378 ~-DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 M-DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred C-CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 2 3889999965422 2232 23333322 12345688888752 233445556789999999999999999
Q ss_pred HHHcCCCCchhhHHHHHHHHHHHHHcCCchh
Q 002362 344 KIAFSDRPIEEREKLEQIGRKIANKCKGLPL 374 (930)
Q Consensus 344 ~~~~~~~~~~~~~~l~~~~~~i~~~c~glPL 374 (930)
+++....-.-. +++..-|++.+.+..-
T Consensus 457 kka~~r~l~l~----~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 457 KKAVQEQLNAP----PEVLEFIASRISRNIR 483 (617)
T ss_pred HHHHhcCCCCC----HHHHHHHHHhccCCHH
Confidence 88754332211 2345556666655433
No 147
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.87 E-value=0.00066 Score=76.34 Aligned_cols=159 Identities=17% Similarity=0.172 Sum_probs=93.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcC-C-eEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKF-D-KILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVA 274 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (930)
..-+.|+|.+|+|||.|++.+++. ..... + .++|++. .++..++...+... ..++ +.+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHH
Confidence 445999999999999999999994 43433 3 4666654 34556666555321 1222 223333
Q ss_pred CceEEEEEeCccccC-ccCh-hhhhhhhcc-CCCCcEEEEEcC-ChHH--------HhhhCCcceEeCCCCChHHHHHHH
Q 002362 275 GMCFLLVLDDVWDGN-YMKW-EPFFHCLKN-GLHRSKILVTTR-KKSV--------ASMMGSTNIISIKELTEEECRLLF 342 (930)
Q Consensus 275 ~kr~LlVlDdv~~~~-~~~~-~~l~~~l~~-~~~gs~iivTtr-~~~v--------~~~~~~~~~~~l~~L~~~~~~~lf 342 (930)
.+.-+|++||+.... ...+ +.+...+.. ...|..||+||. ...- ...+.....+++++.+.++-.+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 344589999997431 1112 223333321 123446888875 3321 122344558899999999999999
Q ss_pred HHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHH
Q 002362 343 NKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAA 376 (930)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai 376 (930)
++.+..... ..+ +++...|++.+.|..-.+
T Consensus 273 ~~~~~~~~~-~l~---~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 273 RKMLEIEHG-ELP---EEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHhcCC-CCC---HHHHHHHHhccccCHHHH
Confidence 988753222 111 235677777777754433
No 148
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.87 E-value=0.00027 Score=74.00 Aligned_cols=162 Identities=14% Similarity=0.129 Sum_probs=80.7
Q ss_pred ceecchhhHHHHHHHhccC-------CC--CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccH
Q 002362 171 EICGRVDEKNELLSKLLCE-------SS--DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEE 241 (930)
Q Consensus 171 ~~vGr~~~~~~l~~~L~~~-------~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 241 (930)
.++|.+..+++|.+..... .. ...+...-+.++|++|+||||+|+.+++...-...-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 4788887766665432110 00 0123456788999999999999999987321101111122333322
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCc--------cChhhhhhhhccCCCCcEEEEEc
Q 002362 242 FRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNY--------MKWEPFFHCLKNGLHRSKILVTT 313 (930)
Q Consensus 242 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------~~~~~l~~~l~~~~~gs~iivTt 313 (930)
.++. ...-+. ........+ +...+ -+|++|++..-.. +..+.+...+........+|+++
T Consensus 83 ~~l~----~~~~g~-----~~~~~~~~~-~~a~~--~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 ADLV----GEYIGH-----TAQKTREVI-KKALG--GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HHhh----hhhccc-----hHHHHHHHH-HhccC--CEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 1111 111010 011112222 22222 4889999975211 11223333333333334556665
Q ss_pred CChHHHh------hh-CC-cceEeCCCCChHHHHHHHHHHHcC
Q 002362 314 RKKSVAS------MM-GS-TNIISIKELTEEECRLLFNKIAFS 348 (930)
Q Consensus 314 r~~~v~~------~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~ 348 (930)
...+... .+ .. ...+++++++.++..+++.+.+..
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 5433211 01 11 346889999999999999877643
No 149
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.87 E-value=0.001 Score=69.48 Aligned_cols=167 Identities=17% Similarity=0.203 Sum_probs=106.4
Q ss_pred CCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHH
Q 002362 169 EEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAI 248 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (930)
++.+.+|+.+...+..++...+. .-+..|.|+|-.|.|||.+.+.+++.. =-..+|+++-+.++.+.++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~-----n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKL-----NLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhc-----CCcceeeehHHhccHHHHHHHH
Confidence 56788999999999998865432 245677999999999999999998843 2246899999999999999999
Q ss_pred HHHhcCCCCCC--c-----cHHHHHHHHHH--Hh--cCceEEEEEeCccccCccChhh-hhhhh---cc-CCCCcEEEEE
Q 002362 249 VEALDGHESRL--G-----EFQSLIKHIYE--SV--AGMCFLLVLDDVWDGNYMKWEP-FFHCL---KN-GLHRSKILVT 312 (930)
Q Consensus 249 ~~~l~~~~~~~--~-----~~~~~~~~l~~--~l--~~kr~LlVlDdv~~~~~~~~~~-l~~~l---~~-~~~gs~iivT 312 (930)
+.+......+. . ........+.+ .. +++.++||||+++.-. +.+. +...+ .. .....-+|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr--D~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR--DMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh--ccchHHHHHHHHHHHHhCCCceEEEE
Confidence 99985221111 1 11222333333 12 2568999999996532 2221 22221 11 1112334444
Q ss_pred cCChH--H-HhhhCCc--ceEeCCCCChHHHHHHHHHH
Q 002362 313 TRKKS--V-ASMMGST--NIISIKELTEEECRLLFNKI 345 (930)
Q Consensus 313 tr~~~--v-~~~~~~~--~~~~l~~L~~~~~~~lf~~~ 345 (930)
+-... . ...+|+. .++....-+.+|...++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 44322 2 2224553 36678888999999988763
No 150
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.86 E-value=1.9e-06 Score=97.03 Aligned_cols=214 Identities=31% Similarity=0.328 Sum_probs=132.1
Q ss_pred cCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccC
Q 002362 580 ESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLI 659 (930)
Q Consensus 580 ~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~ 659 (930)
.+..+..+.+..| .+..+-..++.+.+|.+|++.+|.|..+...+..+++|++|++++|. +..+.. +..++
T Consensus 70 ~l~~l~~l~l~~n-------~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~ 140 (414)
T KOG0531|consen 70 SLTSLKELNLRQN-------LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLT 140 (414)
T ss_pred HhHhHHhhccchh-------hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhcc
Confidence 3455566666633 33433355788999999999999999888778899999999999998 666644 77888
Q ss_pred CcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCcccc--cccccCCCcCCeeeeecccCCCChhhhhhcc
Q 002362 660 NMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACR--LESLRSLELLQVCGIRRLGNVTDVGEAKRLE 737 (930)
Q Consensus 660 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~--l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~ 737 (930)
.|+.|++.+| .+..+ .++..+++|+.+++.++.... ... +..+..++.+.+.++..... . .
T Consensus 141 ~L~~L~l~~N-~i~~~-~~~~~l~~L~~l~l~~n~i~~------ie~~~~~~~~~l~~l~l~~n~i~~i-~--------~ 203 (414)
T KOG0531|consen 141 LLKELNLSGN-LISDI-SGLESLKSLKLLDLSYNRIVD------IENDELSELISLEELDLGGNSIREI-E--------G 203 (414)
T ss_pred chhhheeccC-cchhc-cCCccchhhhcccCCcchhhh------hhhhhhhhccchHHHhccCCchhcc-c--------c
Confidence 8999999998 34443 356668888888876655433 112 34455555555544433211 1 1
Q ss_pred ccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCC--cceEEEeeccCCCCCCcccccccCccEEEeeCCCCCC
Q 002362 738 LDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPN--LRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCE 815 (930)
Q Consensus 738 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~ 815 (930)
+.....+..+++..|.+.. ...+..... |+.+++.+|++.. .+..+..+.++..|++.++...
T Consensus 204 ~~~~~~l~~~~l~~n~i~~-------------~~~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~- 268 (414)
T KOG0531|consen 204 LDLLKKLVLLSLLDNKISK-------------LEGLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRIS- 268 (414)
T ss_pred hHHHHHHHHhhccccccee-------------ccCcccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccc-
Confidence 2222333334555554432 122222232 7788888887766 4455666777778888777533
Q ss_pred CCCCCCCCCCcceeeeccC
Q 002362 816 KLPPLGKLPSLEKLSISFM 834 (930)
Q Consensus 816 ~l~~l~~l~~L~~L~L~~~ 834 (930)
.+..+...+.+..+....+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~ 287 (414)
T KOG0531|consen 269 NLEGLERLPKLSELWLNDN 287 (414)
T ss_pred ccccccccchHHHhccCcc
Confidence 2223444455555555543
No 151
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.85 E-value=0.00056 Score=77.78 Aligned_cols=159 Identities=19% Similarity=0.199 Sum_probs=93.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcC--CeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKF--DKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESV 273 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 273 (930)
....+.|+|..|+|||+|++.+++. ....+ ..++|+++. ++..++...+... ..++ +.+.+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~~----~~~~~ 209 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TMEE----FKEKY 209 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHHH----HHHHH
Confidence 3456899999999999999999994 44444 235565543 3334444444221 1222 23333
Q ss_pred cCceEEEEEeCccccCccC-h-hhhhhhhcc-CCCCcEEEEEcCChH---------HHhhhCCcceEeCCCCChHHHHHH
Q 002362 274 AGMCFLLVLDDVWDGNYMK-W-EPFFHCLKN-GLHRSKILVTTRKKS---------VASMMGSTNIISIKELTEEECRLL 341 (930)
Q Consensus 274 ~~kr~LlVlDdv~~~~~~~-~-~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~l 341 (930)
+. .-+|||||+....... + +.+...+.. ...|..||+||.... +...+.....+++++.+.++...+
T Consensus 210 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 RS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred hc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 32 3389999996532111 1 233333221 123445788776531 223344456899999999999999
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHH
Q 002362 342 FNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAA 376 (930)
Q Consensus 342 f~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai 376 (930)
+++.+-.... ..+ +++...|++.+.|..-.+
T Consensus 289 l~~~~~~~~~-~l~---~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 289 LKKKAEEEGI-DLP---DEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHcCC-CCC---HHHHHHHHcCcCCCHHHH
Confidence 9998754221 111 234777888888876643
No 152
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00067 Score=78.50 Aligned_cols=191 Identities=16% Similarity=0.136 Sum_probs=107.1
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.+++|.+...+.+...+... .-...+.++|+.|+||||+|+.+....--...- ....++.....+.|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~-------~~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQG-----KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP-------DGEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-------CCCCCCccHHHHHHh
Confidence 46899999999999988642 234567789999999999999887621000000 000111111111111
Q ss_pred HHhcCC-----CCCCccHH---HHHHHHHH-HhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEE-EcCChHHH
Q 002362 250 EALDGH-----ESRLGEFQ---SLIKHIYE-SVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILV-TTRKKSVA 319 (930)
Q Consensus 250 ~~l~~~-----~~~~~~~~---~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v~ 319 (930)
...... .......+ ++...+.. -..+++-++|+|++.......+..+...+-.......+|+ ||....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 110000 00011122 22222211 1235566889999987665567777776665544555554 54444433
Q ss_pred hh-hCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHH
Q 002362 320 SM-MGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAA 376 (930)
Q Consensus 320 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai 376 (930)
.. ......+++.+++.++....+...+-..+..-. .+.+..|++.++|.+..+
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 32 233568899999999998888876643221111 233667888888877543
No 153
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00066 Score=72.41 Aligned_cols=196 Identities=12% Similarity=0.116 Sum_probs=113.3
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHH-------------HhcCCeEEEEEeC
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEV-------------KRKFDKILWVCVS 236 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~vs 236 (930)
.+++|.+..++.+...+... .-.....++|+.|+||+++|..+....-- ...+.-..|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-----rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-----RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 36889999999999988642 23478999999999999999887663110 1112223444321
Q ss_pred CCccHHHHHHHHHHHhc--CCCCCCccHHHHHHHHHHHh-----cCceEEEEEeCccccCccChhhhhhhhccCCCCcEE
Q 002362 237 ETFEEFRVAKAIVEALD--GHESRLGEFQSLIKHIYESV-----AGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKI 309 (930)
Q Consensus 237 ~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 309 (930)
...+-..+...-++..+ ........+++. +.+.+.+ .+++-++|+|++...+......+...+-... .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00000000011111111 011111222332 2233332 3556699999998877667777777776555 3455
Q ss_pred E-EEcCChHHHhhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHH
Q 002362 310 L-VTTRKKSVASMM-GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKII 379 (930)
Q Consensus 310 i-vTtr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~ 379 (930)
| +|+....+...+ +-...+++.++++++..+.+.+....... .. ....++..++|.|..+..+
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~---~~----~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL---NI----NFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc---hh----HHHHHHHHcCCCHHHHHHH
Confidence 5 454444444433 33779999999999999999886422111 11 1356888999999766543
No 154
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.79 E-value=0.00022 Score=85.88 Aligned_cols=154 Identities=16% Similarity=0.216 Sum_probs=88.5
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhc-----C-CeEEEEEeCCCccHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRK-----F-DKILWVCVSETFEEFR 243 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F-~~~~wv~vs~~~~~~~ 243 (930)
+.++||++++++++..|... ...-+.++|++|+|||++|+.+++. +... + +..+|. ++ ...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~--~~~~~~p~~l~~~~~~~-~~----~~~ 248 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALR--IAEGKVPENLKNAKIYS-LD----MGS 248 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH--HHhCCCchhhcCCeEEE-ec----HHH
Confidence 36899999999999988643 2334679999999999999999884 3221 1 334442 11 111
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHh-cCceEEEEEeCccccC---------ccChhhhhhhhccCCCCcEEEEEc
Q 002362 244 VAKAIVEALDGHESRLGEFQSLIKHIYESV-AGMCFLLVLDDVWDGN---------YMKWEPFFHCLKNGLHRSKILVTT 313 (930)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~iivTt 313 (930)
+.. + .....+.++....+.+.+ ..++.+|++|++..-. .+.-+.++..+..+ .-++|-+|
T Consensus 249 l~a-------~-~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaT 318 (731)
T TIGR02639 249 LLA-------G-TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGST 318 (731)
T ss_pred Hhh-------h-ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEec
Confidence 110 0 011123444444444444 3457899999996421 01112234434332 23455554
Q ss_pred CChHHHhh------h-CCcceEeCCCCChHHHHHHHHHHH
Q 002362 314 RKKSVASM------M-GSTNIISIKELTEEECRLLFNKIA 346 (930)
Q Consensus 314 r~~~v~~~------~-~~~~~~~l~~L~~~~~~~lf~~~~ 346 (930)
...+.... + .-.+.+++++++.++..++++...
T Consensus 319 t~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 43322111 1 124579999999999999998644
No 155
>PRK06620 hypothetical protein; Validated
Probab=97.76 E-value=0.00053 Score=68.96 Aligned_cols=134 Identities=17% Similarity=0.134 Sum_probs=78.0
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCce
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMC 277 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (930)
+.+.|+|++|+|||+|++.+++.. . ..++. ..+.. + +..+ ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~------~-~~~~~--~~~~~---------------------~-------~~~~-~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS------N-AYIIK--DIFFN---------------------E-------EILE-KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc------C-CEEcc--hhhhc---------------------h-------hHHh-cC
Confidence 679999999999999999877632 1 11111 10000 0 0111 22
Q ss_pred EEEEEeCccccCccChhhhhhhhcc-CCCCcEEEEEcCChH-------HHhhhCCcceEeCCCCChHHHHHHHHHHHcCC
Q 002362 278 FLLVLDDVWDGNYMKWEPFFHCLKN-GLHRSKILVTTRKKS-------VASMMGSTNIISIKELTEEECRLLFNKIAFSD 349 (930)
Q Consensus 278 ~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 349 (930)
-++++||+..-.. ..+...+.. ...|..||+|++... ..+.+...-+++++++++++...++++.+...
T Consensus 87 d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 87 NAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 4788999963211 122222211 134668999988532 33344556689999999999888888876422
Q ss_pred CCchhhHHHHHHHHHHHHHcCCchhHH
Q 002362 350 RPIEEREKLEQIGRKIANKCKGLPLAA 376 (930)
Q Consensus 350 ~~~~~~~~l~~~~~~i~~~c~glPLai 376 (930)
.- ..+ +++..-|++.+.|.--.+
T Consensus 164 ~l-~l~---~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 164 SV-TIS---RQIIDFLLVNLPREYSKI 186 (214)
T ss_pred CC-CCC---HHHHHHHHHHccCCHHHH
Confidence 11 111 345666777777655443
No 156
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.69 E-value=0.00013 Score=67.57 Aligned_cols=97 Identities=21% Similarity=0.169 Sum_probs=53.1
Q ss_pred EEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC-ceE
Q 002362 200 ISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAG-MCF 278 (930)
Q Consensus 200 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~ 278 (930)
|.|+|++|+||||+|+.+++. .. + ..+.+..+...+ .........+...+.+.-.. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~--l~--~-~~~~i~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY--LG--F-PFIEIDGSELIS---------------SYAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TT--S-EEEEEETTHHHT---------------SSTTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhh--cc--c-cccccccccccc---------------ccccccccccccccccccccccce
Confidence 579999999999999999884 22 1 234444432110 01111222333333333233 379
Q ss_pred EEEEeCccccCccC-----------hhhhhhhhccCC---CCcEEEEEcCCh
Q 002362 279 LLVLDDVWDGNYMK-----------WEPFFHCLKNGL---HRSKILVTTRKK 316 (930)
Q Consensus 279 LlVlDdv~~~~~~~-----------~~~l~~~l~~~~---~gs~iivTtr~~ 316 (930)
+|++||++.-.... ...+...+.... .+..||.||...
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCCh
Confidence 99999997643322 233444444432 235677777763
No 157
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.69 E-value=0.00049 Score=83.96 Aligned_cols=152 Identities=20% Similarity=0.245 Sum_probs=89.3
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHh-----cC-CeEEEEEeCCCccHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKR-----KF-DKILWVCVSETFEEFR 243 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----~F-~~~~wv~vs~~~~~~~ 243 (930)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++.. +.. .. +..+|. + +...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~--i~~~~vp~~l~~~~i~~-l----~~~~ 245 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQR--IVNRDVPDILEDKLVIT-L----DIGL 245 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEE-e----eHHH
Confidence 358999999999999997532 234579999999999999999884 321 11 345552 1 1111
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHh-cCceEEEEEeCccccC-------ccCh-hhhhhhhccCCCCcEEEEEcC
Q 002362 244 VAKAIVEALDGHESRLGEFQSLIKHIYESV-AGMCFLLVLDDVWDGN-------YMKW-EPFFHCLKNGLHRSKILVTTR 314 (930)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~-------~~~~-~~l~~~l~~~~~gs~iivTtr 314 (930)
+ +.+. ....+.++....+.+.+ ..++.+|++|++..-. .... .-+...+..+ .-++|.+|.
T Consensus 246 l-------~ag~-~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt 315 (821)
T CHL00095 246 L-------LAGT-KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATT 315 (821)
T ss_pred H-------hccC-CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCC
Confidence 1 1111 11234444444444443 3567899999995311 0011 1233333332 245666666
Q ss_pred ChHHHhh-------hCCcceEeCCCCChHHHHHHHHH
Q 002362 315 KKSVASM-------MGSTNIISIKELTEEECRLLFNK 344 (930)
Q Consensus 315 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~ 344 (930)
..+.... .....++++...+.++...++..
T Consensus 316 ~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 316 LDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 5543221 12245788999999998888765
No 158
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00046 Score=77.86 Aligned_cols=166 Identities=16% Similarity=0.196 Sum_probs=94.6
Q ss_pred CCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHH
Q 002362 169 EEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAI 248 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (930)
+.+.+|-++.+++|+++|.-..-...-+-.++.+||++|+|||+|++.++. .....|- -+++..-.|..+|-..
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkfv---R~sLGGvrDEAEIRGH- 395 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFV---RISLGGVRDEAEIRGH- 395 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEE---EEecCccccHHHhccc-
Confidence 456799999999999998532211123447999999999999999999988 4444442 2344444444443110
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccC----hhhhhhhhccC-C------------CCcEEE-
Q 002362 249 VEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMK----WEPFFHCLKNG-L------------HRSKIL- 310 (930)
Q Consensus 249 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~~-~------------~gs~ii- 310 (930)
....-+ .-...+.+.+.+ .+.+.-+++||.++....+- -..++..|.+- + -=|.|+
T Consensus 396 ----RRTYIG-amPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 396 ----RRTYIG-AMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ----cccccc-cCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 000111 111223333333 24556699999997543211 12233333221 1 115544
Q ss_pred EEcCCh-H--HHhhhCCcceEeCCCCChHHHHHHHHHHH
Q 002362 311 VTTRKK-S--VASMMGSTNIISIKELTEEECRLLFNKIA 346 (930)
Q Consensus 311 vTtr~~-~--v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 346 (930)
|||-+. + .+..+...+++++.+-+++|-.++-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 444432 2 12234456799999999999888877765
No 159
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.0011 Score=71.19 Aligned_cols=97 Identities=11% Similarity=0.078 Sum_probs=67.3
Q ss_pred CceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCCh-HHHhh-hCCcceEeCCCCChHHHHHHHHHHHcCCCCc
Q 002362 275 GMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKK-SVASM-MGSTNIISIKELTEEECRLLFNKIAFSDRPI 352 (930)
Q Consensus 275 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 352 (930)
+++-++|+|+++..+......+...+-....++.+|+||.+. .+... .+-...+.+.+++.+++.+.+...... ..
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-~~- 182 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-SD- 182 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-CC-
Confidence 444466789999887777788888877766677777777765 33333 233678999999999999988765311 11
Q ss_pred hhhHHHHHHHHHHHHHcCCchhHHHHH
Q 002362 353 EEREKLEQIGRKIANKCKGLPLAAKII 379 (930)
Q Consensus 353 ~~~~~l~~~~~~i~~~c~glPLai~~~ 379 (930)
.+.+..++..++|.|..+..+
T Consensus 183 ------~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ------ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ------hHHHHHHHHHcCCCHHHHHHH
Confidence 112456788999999866544
No 160
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.64 E-value=0.001 Score=74.83 Aligned_cols=167 Identities=14% Similarity=0.146 Sum_probs=91.5
Q ss_pred CCceecchhhHHHHHHHhccCCC-------CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhc-----CCeEEEEEeC
Q 002362 169 EEEICGRVDEKNELLSKLLCESS-------DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRK-----FDKILWVCVS 236 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs 236 (930)
-.++.|.+..++++.+.+..+-. .+-...+-+.++|++|.|||++|+.+++. .... +....|+.++
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEecc
Confidence 34578899999888887642110 01224566899999999999999999984 3322 2234455544
Q ss_pred CCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH-hcCceEEEEEeCccccC-------ccCh-----hhhhhhhccC
Q 002362 237 ETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYES-VAGMCFLLVLDDVWDGN-------YMKW-----EPFFHCLKNG 303 (930)
Q Consensus 237 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~-------~~~~-----~~l~~~l~~~ 303 (930)
.. +++....+. ....+..+....++. ..+++.+|+||+++.-- .... ..+...+...
T Consensus 259 ~~--------eLl~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 259 GP--------ELLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred ch--------hhcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc
Confidence 31 111111000 000111222222222 23578999999997421 0111 1233333221
Q ss_pred --CCCcEEEEEcCChHHHh-hh-C---CcceEeCCCCChHHHHHHHHHHHc
Q 002362 304 --LHRSKILVTTRKKSVAS-MM-G---STNIISIKELTEEECRLLFNKIAF 347 (930)
Q Consensus 304 --~~gs~iivTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~~~ 347 (930)
..+..||.||...+... .+ . -...+++...+.++..++|..+..
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 13445666666543321 11 1 245689999999999999998763
No 161
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.64 E-value=0.0012 Score=79.13 Aligned_cols=165 Identities=18% Similarity=0.207 Sum_probs=88.9
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.+.+|.++.+++|+++|............++.++|++|+||||+|+.++. .....| +-+..+...+...+...-
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~---~~i~~~~~~d~~~i~g~~- 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY---VRMALGGVRDEAEIRGHR- 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE---EEEEcCCCCCHHHhccch-
Confidence 45899999999999888632211112345799999999999999999986 232222 123334333333221111
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccC----hhhhhhhhccC---------------CCCcEEE
Q 002362 250 EALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMK----WEPFFHCLKNG---------------LHRSKIL 310 (930)
Q Consensus 250 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~~---------------~~gs~ii 310 (930)
+...+. ....+.+.+.+. ....-+++||.++...... ...+...+... -...-+|
T Consensus 396 ~~~~g~-----~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 396 RTYIGS-----MPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred hccCCC-----CCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 001010 111222333222 2233478999997643221 13344433321 0223344
Q ss_pred EEcCChHHHhh-hCCcceEeCCCCChHHHHHHHHHHH
Q 002362 311 VTTRKKSVASM-MGSTNIISIKELTEEECRLLFNKIA 346 (930)
Q Consensus 311 vTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 346 (930)
.|+.+..+... .+-..++++.+++++|-.++.+++.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 55544332221 1234678999999999888887764
No 162
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.61 E-value=0.0016 Score=79.08 Aligned_cols=165 Identities=18% Similarity=0.193 Sum_probs=85.7
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.+++|.++.+++|.+++............++.++|++|+|||++|+.+++. ....|- -+.++...+..++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~~---~i~~~~~~~~~~i~g~-- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKFV---RFSLGGVRDEAEIRGH-- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCeE---EEeCCCcccHHHHcCC--
Confidence 358899999999988764321110123358999999999999999999883 333331 2223333333222110
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccC----hhhhhhhhcc--------C-------CCCcEEE
Q 002362 250 EALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMK----WEPFFHCLKN--------G-------LHRSKIL 310 (930)
Q Consensus 250 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~--------~-------~~gs~ii 310 (930)
.... .......+.+.+...- .++-+|+||+++...... ...+...+.. . ..+..+|
T Consensus 393 ---~~~~-~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 393 ---RRTY-VGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ---CCce-eCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 0000 0011122233333332 233488999997643211 1122222211 0 0123344
Q ss_pred EEcCChH-HHh-hhCCcceEeCCCCChHHHHHHHHHHH
Q 002362 311 VTTRKKS-VAS-MMGSTNIISIKELTEEECRLLFNKIA 346 (930)
Q Consensus 311 vTtr~~~-v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~ 346 (930)
.||.... +.. .......+++.+++.++-.++++++.
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 5555432 111 12234578999999998888887654
No 163
>PRK08116 hypothetical protein; Validated
Probab=97.61 E-value=0.00031 Score=73.31 Aligned_cols=104 Identities=21% Similarity=0.233 Sum_probs=62.0
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCce
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMC 277 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (930)
..+.++|..|+|||.||..+++. ...+-..++++++ .+++..|...+.... ..+..+ +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~------~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNF------PQLLNRIKSTYKSSG--KEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhccc--cccHHH----HHHHhcCCC
Confidence 45899999999999999999994 4333445666653 345555555543221 111222 233344333
Q ss_pred EEEEEeCccccCccChhh--hhhhhcc-CCCCcEEEEEcCCh
Q 002362 278 FLLVLDDVWDGNYMKWEP--FFHCLKN-GLHRSKILVTTRKK 316 (930)
Q Consensus 278 ~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~~ 316 (930)
||||||+..+...+|.. +...+.. -..|..+||||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999996544445643 3333332 13456799999853
No 164
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.54 E-value=8.6e-05 Score=53.00 Aligned_cols=41 Identities=29% Similarity=0.499 Sum_probs=33.5
Q ss_pred CcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccccccc
Q 002362 582 TSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPD 629 (930)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~ 629 (930)
++|++|++++| .+..+|..+++|++|++|++++|.|+.+|.
T Consensus 1 ~~L~~L~l~~N-------~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNN-------QITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSS-------S-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCC-------CCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 47899999954 677888889999999999999999987653
No 165
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.51 E-value=0.00045 Score=79.84 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=40.2
Q ss_pred CCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhch
Q 002362 169 EEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
-.+++|.++.++++..++....-+ ....+++.|+|++|+||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~-~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLE-NAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccc-cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999888653321 223468999999999999999999874
No 166
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.48 E-value=0.00086 Score=79.75 Aligned_cols=155 Identities=17% Similarity=0.249 Sum_probs=88.7
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhc-----CCeEEEEEeCCCccHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRK-----FDKILWVCVSETFEEFRV 244 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~~ 244 (930)
+.++||+.++++++..|.... ..-+.++|.+|+|||++|+.++... +... .++.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l-----~~~~l 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL-----DIGSL 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec-----cHHHH
Confidence 358999999999999887532 2334689999999999999998732 1111 24444421 11111
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHh-cCceEEEEEeCcccc--------CccChhh-hhhhhccCCCCcEEEEEcC
Q 002362 245 AKAIVEALDGHESRLGEFQSLIKHIYESV-AGMCFLLVLDDVWDG--------NYMKWEP-FFHCLKNGLHRSKILVTTR 314 (930)
Q Consensus 245 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~~~~-l~~~l~~~~~gs~iivTtr 314 (930)
+ .+ .....+.++....+.+.+ +.++.+|++|++..- ...+... +...+..+ .-+||-+|.
T Consensus 254 ----l---aG-~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g--~i~vIgATt 323 (758)
T PRK11034 254 ----L---AG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG--KIRVIGSTT 323 (758)
T ss_pred ----h---cc-cchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC--CeEEEecCC
Confidence 1 11 111123334444444433 345679999999641 1111222 23333222 345565555
Q ss_pred ChHHHhhh-------CCcceEeCCCCChHHHHHHHHHHH
Q 002362 315 KKSVASMM-------GSTNIISIKELTEEECRLLFNKIA 346 (930)
Q Consensus 315 ~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 346 (930)
..+....+ .-.+.+++++++.++..+++....
T Consensus 324 ~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 44432211 123579999999999999998653
No 167
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.46 E-value=0.00036 Score=75.32 Aligned_cols=127 Identities=23% Similarity=0.372 Sum_probs=79.9
Q ss_pred ccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCC
Q 002362 738 LDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKL 817 (930)
Q Consensus 738 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l 817 (930)
+..+.++..|+++.|.+.. ++ ..+++|++|.+++|.....+|..+ .++|++|++++|.....+
T Consensus 48 ~~~~~~l~~L~Is~c~L~s------------LP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES------------LP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc------------cC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc
Confidence 4456888899998886654 23 245679999998866544467654 368999999988655555
Q ss_pred CCCCCCCCcceeeeccCc--CceEeCCccccCcccccCccccceeeccc----------cc-cccceeeeccCCccCCCC
Q 002362 818 PPLGKLPSLEKLSISFMC--SVKRVDNEILGIEITIAFPKLKSLTISWI----------IM-PRLSSLTFDSCPKLKALP 884 (930)
Q Consensus 818 ~~l~~l~~L~~L~L~~~~--~l~~~~~~~~~~~~~~~f~~L~~L~l~~~----------~l-p~L~~L~l~~c~~L~~lp 884 (930)
| ++|+.|++..+. .+.. ..++|+.|.+.++ .+ ++|+.|.+.+|..+ .+|
T Consensus 111 P-----~sLe~L~L~~n~~~~L~~------------LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP 172 (426)
T PRK15386 111 P-----ESVRSLEIKGSATDSIKN------------VPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILP 172 (426)
T ss_pred c-----cccceEEeCCCCCccccc------------CcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCc
Confidence 4 457777775321 1111 2345666655321 12 47888888888644 355
Q ss_pred CCCCCCCCccEEEEecC
Q 002362 885 DHFHQTTTLKEFNIGWN 901 (930)
Q Consensus 885 ~~l~~l~~L~~L~l~~n 901 (930)
..+. .+|+.|+++.|
T Consensus 173 ~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 173 EKLP--ESLQSITLHIE 187 (426)
T ss_pred cccc--ccCcEEEeccc
Confidence 4443 57777877664
No 168
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.45 E-value=0.00049 Score=64.54 Aligned_cols=88 Identities=19% Similarity=0.223 Sum_probs=47.2
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCc-
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGM- 276 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k- 276 (930)
..+.|+|++|+||||+|+.++.. .......++++..+........... ......... ..........+.+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKA-SGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH-hhhhhccCC-CCCHHHHHHHHHHHHHhcC
Confidence 57899999999999999999873 2222223566655443322222111 111111111 122222233333444333
Q ss_pred eEEEEEeCccccC
Q 002362 277 CFLLVLDDVWDGN 289 (930)
Q Consensus 277 r~LlVlDdv~~~~ 289 (930)
..+|++|+++...
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4899999997643
No 169
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.44 E-value=0.0012 Score=80.43 Aligned_cols=153 Identities=14% Similarity=0.183 Sum_probs=85.9
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhc------CCeEEE-EEeCCCccHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRK------FDKILW-VCVSETFEEF 242 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~w-v~vs~~~~~~ 242 (930)
+.++||+.++++++..|... ...-+.++|.+|+|||++|+.+... +... ....+| +.++.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~--i~~~~vp~~l~~~~~~~l~l~~----- 244 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR--IINGEVPEGLKGRRVLALDMGA----- 244 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHH--hhcCCCchhhCCCEEEEEehhh-----
Confidence 45899999999999999753 2335669999999999999998873 3211 122332 22221
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHh--cCceEEEEEeCccccCcc--------ChhhhhhhhccCCCCcEEEEE
Q 002362 243 RVAKAIVEALDGHESRLGEFQSLIKHIYESV--AGMCFLLVLDDVWDGNYM--------KWEPFFHCLKNGLHRSKILVT 312 (930)
Q Consensus 243 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~--------~~~~l~~~l~~~~~gs~iivT 312 (930)
+. .+ .....+.++....+.+.+ .+++.+|++|++..-... .-+.++..+..+ .-++|-|
T Consensus 245 -l~-------ag-~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g--~l~~Iga 313 (857)
T PRK10865 245 -LV-------AG-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--ELHCVGA 313 (857)
T ss_pred -hh-------hc-cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC--CCeEEEc
Confidence 11 00 011122333333333322 256789999999643110 112233333332 3456666
Q ss_pred cCChHHHhhh-------CCcceEeCCCCChHHHHHHHHHHH
Q 002362 313 TRKKSVASMM-------GSTNIISIKELTEEECRLLFNKIA 346 (930)
Q Consensus 313 tr~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 346 (930)
|...+....+ .-.+.+.+...+.++...+++...
T Consensus 314 Tt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 314 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 6655432111 123466777778899988886543
No 170
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.44 E-value=0.00071 Score=75.03 Aligned_cols=158 Identities=17% Similarity=0.162 Sum_probs=88.0
Q ss_pred CceecchhhHHHHHHHhccCCCC-------CCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSD-------SPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEF 242 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 242 (930)
.++.|.+..+++|.+.+..+-.. +-...+-+.++|++|+|||++|+.+++ .....| +.|..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE---EEEecch-----
Confidence 45789998888888876422110 012455688999999999999999998 333333 1222111
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCc------c----C-hhhhhhhh---cc--CCCC
Q 002362 243 RVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNY------M----K-WEPFFHCL---KN--GLHR 306 (930)
Q Consensus 243 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------~----~-~~~l~~~l---~~--~~~g 306 (930)
+ .....+. ....+...+.....+.+.+|+||+++.... . . ...+...+ .. ...+
T Consensus 253 -L----~~k~~Ge-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 -L----IQKYLGD-----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred -h----hhhhcch-----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 1 1111110 011122222223346678999999853110 0 0 01122222 11 1235
Q ss_pred cEEEEEcCChHHHhh-h-C---CcceEeCCCCChHHHHHHHHHHHc
Q 002362 307 SKILVTTRKKSVASM-M-G---STNIISIKELTEEECRLLFNKIAF 347 (930)
Q Consensus 307 s~iivTtr~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~~~ 347 (930)
.+||.||...+.... + . ....+++...+.++..++|..+..
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 678888876543322 1 1 255789999999999999987764
No 171
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.43 E-value=0.0025 Score=70.34 Aligned_cols=160 Identities=16% Similarity=0.142 Sum_probs=87.7
Q ss_pred cCCceecchhhHHHHHHHhccCCC-------CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCcc
Q 002362 168 DEEEICGRVDEKNELLSKLLCESS-------DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFE 240 (930)
Q Consensus 168 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 240 (930)
.-.++.|.+..+++|.+.+..+-. -+-...+-+.++|++|.|||+||+.+++. ....| +.+..
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~--- 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG--- 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh---
Confidence 335688988888888776532110 01234677999999999999999999883 22222 22211
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccC------cc----Ch----hhhhhhhcc--CC
Q 002362 241 EFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGN------YM----KW----EPFFHCLKN--GL 304 (930)
Q Consensus 241 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------~~----~~----~~l~~~l~~--~~ 304 (930)
..+ .....+. ....+...+.......+.+|++|+++.-. .. .. ..+...+.. ..
T Consensus 213 -s~l----~~k~~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 213 -SEF----VQKYLGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred -HHH----HHHhcch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 111 1111110 01112222223334677899999986421 00 01 112222221 22
Q ss_pred CCcEEEEEcCChHHHh-h-hC---CcceEeCCCCChHHHHHHHHHHHc
Q 002362 305 HRSKILVTTRKKSVAS-M-MG---STNIISIKELTEEECRLLFNKIAF 347 (930)
Q Consensus 305 ~gs~iivTtr~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~~ 347 (930)
.+..||.||...+... . .. -...+++...+.++..++|+.+..
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS 330 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh
Confidence 4566888887654321 1 11 245789999999998888886653
No 172
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.42 E-value=0.0013 Score=80.70 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=86.6
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhc------CCeEEEEEeCCCccHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRK------FDKILWVCVSETFEEFR 243 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~vs~~~~~~~ 243 (930)
+.++||+.++++++..|... ...-+.++|.+|+|||++|+.++.. +... ....+|.. +...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~~ 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMGA 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHHH
Confidence 35899999999999999743 2344568999999999999998873 3221 12333321 1111
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHhc--CceEEEEEeCccccCc----c---Ch-hhhhhhhccCCCCcEEEEEc
Q 002362 244 VAKAIVEALDGHESRLGEFQSLIKHIYESVA--GMCFLLVLDDVWDGNY----M---KW-EPFFHCLKNGLHRSKILVTT 313 (930)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~----~---~~-~~l~~~l~~~~~gs~iivTt 313 (930)
+. .+ .....+.+.....+.+.+. +++.+|++|++..-.. . +- +.++..+.. ..-++|-+|
T Consensus 240 l~-------a~-~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~--g~i~~IgaT 309 (852)
T TIGR03346 240 LI-------AG-AKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GELHCIGAT 309 (852)
T ss_pred Hh-------hc-chhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc--CceEEEEeC
Confidence 11 00 0111233333344444432 4689999999964210 0 01 112222221 124455555
Q ss_pred CChHHHhhh-------CCcceEeCCCCChHHHHHHHHHHH
Q 002362 314 RKKSVASMM-------GSTNIISIKELTEEECRLLFNKIA 346 (930)
Q Consensus 314 r~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 346 (930)
...+....+ .-...+.+...+.++...++....
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 544432211 224578899999999999887653
No 173
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.41 E-value=4.2e-06 Score=92.93 Aligned_cols=47 Identities=21% Similarity=0.219 Sum_probs=28.7
Q ss_pred HHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcccc
Q 002362 575 ERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRK 626 (930)
Q Consensus 575 ~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~ 626 (930)
..++.-++++++|.+-.-..- .-+. |-.|..+..||.|.|++|.+..
T Consensus 77 q~i~d~lqkt~~lkl~~~pa~----~pt~-pi~ifpF~sLr~LElrg~~L~~ 123 (1096)
T KOG1859|consen 77 QRILDFLQKTKVLKLLPSPAR----DPTE-PISIFPFRSLRVLELRGCDLST 123 (1096)
T ss_pred HHHHHHHhhheeeeecccCCC----CCCC-CceeccccceeeEEecCcchhh
Confidence 334455566677776632222 2222 5667777888888888887764
No 174
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0049 Score=69.48 Aligned_cols=166 Identities=16% Similarity=0.204 Sum_probs=91.4
Q ss_pred CCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHH
Q 002362 169 EEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAI 248 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (930)
+.+.+|.++.+++|++++.-..=.+.-+-+++..+|++|+|||++|+.++. .....| +-++|..-.|+.+|-..
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIkGH- 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIKGH- 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhccc-
Confidence 456789999999999998533211134568999999999999999999987 333333 22455555555543110
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCc----cChhhhhhhhccC-------------CCCcEEEE
Q 002362 249 VEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNY----MKWEPFFHCLKNG-------------LHRSKILV 311 (930)
Q Consensus 249 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~-------------~~gs~iiv 311 (930)
...... .-...+++.+++. +-..-|+.+|.|+.-.. +.-..+...|..- --=|+|++
T Consensus 484 ----RRTYVG-AMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLF 557 (906)
T KOG2004|consen 484 ----RRTYVG-AMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLF 557 (906)
T ss_pred ----ceeeec-cCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEE
Confidence 000001 1122333344332 33445888999864211 0111222222211 12367764
Q ss_pred EcCChHHHh----hhCCcceEeCCCCChHHHHHHHHHHH
Q 002362 312 TTRKKSVAS----MMGSTNIISIKELTEEECRLLFNKIA 346 (930)
Q Consensus 312 Ttr~~~v~~----~~~~~~~~~l~~L~~~~~~~lf~~~~ 346 (930)
...-..+.. .....+++++.+-..+|-.++-.++.
T Consensus 558 icTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 558 ICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 332111111 12235688899988888877766654
No 175
>PRK10536 hypothetical protein; Provisional
Probab=97.40 E-value=0.0025 Score=64.45 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=77.7
Q ss_pred CCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEE--e--CC-----Cc
Q 002362 169 EEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVC--V--SE-----TF 239 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~--v--s~-----~~ 239 (930)
...+.++.......+.++.. ..++.+.|.+|.|||+||..+..+.-..+.|+.++-+. + .+ +-
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG 125 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPG 125 (262)
T ss_pred CccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCC
Confidence 34577888889999988852 24999999999999999999887533344454433322 1 11 00
Q ss_pred cHH----HHHHHHHHHhcCCCCCCccHHHHHH--------HHHHHhcCceE---EEEEeCccccCccChhhhhhhhccCC
Q 002362 240 EEF----RVAKAIVEALDGHESRLGEFQSLIK--------HIYESVAGMCF---LLVLDDVWDGNYMKWEPFFHCLKNGL 304 (930)
Q Consensus 240 ~~~----~~~~~i~~~l~~~~~~~~~~~~~~~--------~l~~~l~~kr~---LlVlDdv~~~~~~~~~~l~~~l~~~~ 304 (930)
+.. ..+.-|...+..-. +....+.... .=..+++|..+ +||+|++.+.+. ..+...+...+
T Consensus 126 ~~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR~g 201 (262)
T PRK10536 126 DIAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTRLG 201 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhhcC
Confidence 111 11122222221100 0011111110 01235667665 999999987653 45555566667
Q ss_pred CCcEEEEEcCCh
Q 002362 305 HRSKILVTTRKK 316 (930)
Q Consensus 305 ~gs~iivTtr~~ 316 (930)
.+|+||+|--..
T Consensus 202 ~~sk~v~~GD~~ 213 (262)
T PRK10536 202 ENVTVIVNGDIT 213 (262)
T ss_pred CCCEEEEeCChh
Confidence 889999987654
No 176
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.39 E-value=0.00096 Score=70.84 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=72.9
Q ss_pred cchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhc
Q 002362 174 GRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALD 253 (930)
Q Consensus 174 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 253 (930)
+|....+...+++..-.. +...+-+.|+|..|+|||.||..+++. ....-..+.+++++ +++.++...+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEHH------HHHHHHHHHHh
Confidence 455555555566543222 123467999999999999999999995 33333345666653 45555555543
Q ss_pred CCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhh--hhhhh-ccC-CCCcEEEEEcCC
Q 002362 254 GHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEP--FFHCL-KNG-LHRSKILVTTRK 315 (930)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~iivTtr~ 315 (930)
.. +..+.. +.+. +-=||||||+-.+....|.. +...+ ... ..+-.+|+||..
T Consensus 205 ~~-----~~~~~l----~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG-----SVKEKI----DAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC-----cHHHHH----HHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 21 122222 2232 33499999998776667853 54444 322 245568899884
No 177
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.38 E-value=0.0016 Score=78.66 Aligned_cols=133 Identities=17% Similarity=0.208 Sum_probs=78.6
Q ss_pred CceecchhhHHHHHHHhccCCC---CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESS---DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAK 246 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 246 (930)
..++|.+..++.+...+..... +......++.++|+.|+|||+||+.++.. . +...+.+..++-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc---
Confidence 4578999999998888764321 11234567899999999999999999872 2 33455566554322111
Q ss_pred HHHHHhcCCC--CCCccHHHHHHHHHHHhcCc-eEEEEEeCccccCccChhhhhhhhccCC-----------CCcEEEEE
Q 002362 247 AIVEALDGHE--SRLGEFQSLIKHIYESVAGM-CFLLVLDDVWDGNYMKWEPFFHCLKNGL-----------HRSKILVT 312 (930)
Q Consensus 247 ~i~~~l~~~~--~~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 312 (930)
+.+.++... .+......+ .+.++.+ .-+++||+++....+.+..+...+..+. ..+.||+|
T Consensus 526 -~~~lig~~~gyvg~~~~~~l----~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~T 600 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGGLL----TEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMT 600 (731)
T ss_pred -HHHHhcCCCCCcccchhhHH----HHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEEC
Confidence 111222211 111112222 2333333 3599999999887777777777765441 23447777
Q ss_pred cCC
Q 002362 313 TRK 315 (930)
Q Consensus 313 tr~ 315 (930)
|..
T Consensus 601 sn~ 603 (731)
T TIGR02639 601 SNA 603 (731)
T ss_pred CCc
Confidence 754
No 178
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.38 E-value=8e-06 Score=71.92 Aligned_cols=101 Identities=18% Similarity=0.251 Sum_probs=62.8
Q ss_pred cceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccccccccccc-CCcccEEeccCCCCCccccccccccCCc
Q 002362 583 SLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPDTLCE-LYNLQKLDISCCCKLKELPQGIGKLINM 661 (930)
Q Consensus 583 ~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~-L~~L~~L~l~~~~~~~~lp~~i~~L~~L 661 (930)
-+-.|||++|..- .+...+..+....+|+..+|++|.++.+|+.+.. .+.+++|++++|. ++.+|..+..++.|
T Consensus 28 E~h~ldLssc~lm----~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aL 102 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM----YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPAL 102 (177)
T ss_pred Hhhhcccccchhh----HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHh
Confidence 3455666644322 2333334445556667777777777777776653 3477777777776 77777777777777
Q ss_pred ceEeecCcccccccCCcCCCCCCCCcCC
Q 002362 662 RHLLNYGTISLRYMPVGIGRLTSLRTLD 689 (930)
Q Consensus 662 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 689 (930)
+.|++..| .+...|..|..|.+|-.|+
T Consensus 103 r~lNl~~N-~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 103 RSLNLRFN-PLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hhcccccC-ccccchHHHHHHHhHHHhc
Confidence 77777776 4455666665555555554
No 179
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.003 Score=67.14 Aligned_cols=96 Identities=9% Similarity=0.093 Sum_probs=66.5
Q ss_pred CceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCC-hHHHhhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCc
Q 002362 275 GMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRK-KSVASMM-GSTNIISIKELTEEECRLLFNKIAFSDRPI 352 (930)
Q Consensus 275 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 352 (930)
+++-++|+|+++..+...-..+...+-....++.+|++|.+ ..+...+ +-...+.+.+++.+++.+.+.... .+
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~~- 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG---VS- 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC---CC-
Confidence 55669999999887666666677777666667777766664 3444333 336789999999999998887531 11
Q ss_pred hhhHHHHHHHHHHHHHcCCchhHHHHHH
Q 002362 353 EEREKLEQIGRKIANKCKGLPLAAKIIG 380 (930)
Q Consensus 353 ~~~~~l~~~~~~i~~~c~glPLai~~~~ 380 (930)
.. .+..++..++|.|+.+..+.
T Consensus 188 --~~----~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 188 --ER----AAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred --hH----HHHHHHHHcCCCHHHHHHHh
Confidence 11 15678899999998765443
No 180
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.0022 Score=69.32 Aligned_cols=163 Identities=10% Similarity=0.024 Sum_probs=90.5
Q ss_pred ceec-chhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 171 EICG-RVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 171 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.++| -+...+.+...+.. +.-.....++|+.|+||||+|+.+.+..--....... .+..-..-+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~-----~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAK-----NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHc-----CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHh
Confidence 3566 55667777777653 2345677999999999999998886631100000000 000000000000
Q ss_pred HHhc------CCCCCCccHHHHHHHHHHH----hcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCCh-HH
Q 002362 250 EALD------GHESRLGEFQSLIKHIYES----VAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKK-SV 318 (930)
Q Consensus 250 ~~l~------~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v 318 (930)
..-. ........+++....+... ..+.+=++|+|++...+......+...+-....++.+|++|.+. .+
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 0000 0000111222322222111 23445589999998776666677888887766778777777653 33
Q ss_pred Hhhh-CCcceEeCCCCChHHHHHHHHHH
Q 002362 319 ASMM-GSTNIISIKELTEEECRLLFNKI 345 (930)
Q Consensus 319 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 345 (930)
...+ +....+++.++++++..+.+.+.
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 3322 33678999999999998888753
No 181
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.37 E-value=0.0021 Score=71.26 Aligned_cols=118 Identities=21% Similarity=0.231 Sum_probs=75.3
Q ss_pred EEEEEecCCChHHHHHHHHhchHHHHhcCCe-EEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCce
Q 002362 199 IISIIGMGGMGKTTLAQLACNHEEVKRKFDK-ILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMC 277 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (930)
++.|+|+-++||||+++.+.. .+.. .+++..-+......-+.+. ...+.+.-..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~------~~~~~~iy~~~~d~~~~~~~l~d~-----------------~~~~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIK------GLLEEIIYINFDDLRLDRIELLDL-----------------LRAYIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHh------hCCcceEEEEecchhcchhhHHHH-----------------HHHHHHhhccCC
Confidence 999999999999999965544 2322 5555543321111111111 111111112277
Q ss_pred EEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChHHHhh------hCCcceEeCCCCChHHHHHHH
Q 002362 278 FLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKSVASM------MGSTNIISIKELTEEECRLLF 342 (930)
Q Consensus 278 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~------~~~~~~~~l~~L~~~~~~~lf 342 (930)
..|+||.|... ..|......+.+.++. +|++|+-+...... .|-...+++-||+-.|...+-
T Consensus 96 ~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 96 SYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred ceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 89999999764 5799888888876665 88888887654322 233568899999999887654
No 182
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.35 E-value=0.0017 Score=79.14 Aligned_cols=138 Identities=17% Similarity=0.243 Sum_probs=77.1
Q ss_pred CceecchhhHHHHHHHhccCCC---CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESS---DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAK 246 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 246 (930)
..++|.+..++.+...+..... +.+....++.++|+.|+|||++|+.+++. ....-...+.+.++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-h----
Confidence 3589999999998888864321 11223468899999999999999999862 222222334444443211 1
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHhcC-ceEEEEEeCccccCccChhhhhhhhccCC-----------CCcEEEEEcC
Q 002362 247 AIVEALDGHESRLGEFQSLIKHIYESVAG-MCFLLVLDDVWDGNYMKWEPFFHCLKNGL-----------HRSKILVTTR 314 (930)
Q Consensus 247 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 314 (930)
.....+-+..+.....++ ...+.+.++. ..-+|+||++...+...+..+...+..+. ..+.||+||.
T Consensus 641 ~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 111122121111111110 0112222322 22599999998777777777777775431 2233788887
Q ss_pred C
Q 002362 315 K 315 (930)
Q Consensus 315 ~ 315 (930)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 6
No 183
>PRK08181 transposase; Validated
Probab=97.35 E-value=0.00056 Score=70.86 Aligned_cols=101 Identities=21% Similarity=0.189 Sum_probs=57.7
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCce
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMC 277 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (930)
.-+.++|++|+|||.||..+.+. .......++|+.+ .+++..+..... ....+.... .+. +-
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l~----~l~-~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARR-----ELQLESAIA----KLD-KF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHHH----HHh-cC
Confidence 35999999999999999999883 3333445566654 345555543321 112222222 222 23
Q ss_pred EEEEEeCccccCccChh--hhhhhhccCCCCcEEEEEcCCh
Q 002362 278 FLLVLDDVWDGNYMKWE--PFFHCLKNGLHRSKILVTTRKK 316 (930)
Q Consensus 278 ~LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~iivTtr~~ 316 (930)
=||||||+.......|. .+...+.....+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 49999999654433332 2444443321123588888854
No 184
>CHL00176 ftsH cell division protein; Validated
Probab=97.33 E-value=0.0019 Score=75.45 Aligned_cols=177 Identities=15% Similarity=0.147 Sum_probs=95.8
Q ss_pred CceecchhhHHHHHH---HhccCCC---CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHH
Q 002362 170 EEICGRVDEKNELLS---KLLCESS---DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFR 243 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~---~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 243 (930)
.++.|.++.++++.+ ++..+.. -+....+-+.++|++|+|||+||+.+++. . .+-|+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~-----~~p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--A-----EVPFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--h-----CCCeeeccHH----H
Confidence 457887765555444 4432211 01223556999999999999999999873 2 1223333321 1
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccC----------ccChhh-hhhhh---cc--CCCCc
Q 002362 244 VAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGN----------YMKWEP-FFHCL---KN--GLHRS 307 (930)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~-l~~~l---~~--~~~gs 307 (930)
+. ....+ .....+...+.+.....+.+|++||++.-. ...+.. +...+ .. ...+-
T Consensus 252 f~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FV----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HH----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 11 11100 011223333444556778999999996421 111222 22222 11 23455
Q ss_pred EEEEEcCChHHHh-hh-C---CcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCC
Q 002362 308 KILVTTRKKSVAS-MM-G---STNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKG 371 (930)
Q Consensus 308 ~iivTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~g 371 (930)
.||.||...+... .+ . -...+.+...+.++-.++++.++..... .. ......+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~----d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SP----DVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-ch----hHHHHHHHhcCCC
Confidence 6777776644322 11 1 2467889999999999999887643211 11 1124567777777
No 185
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.32 E-value=0.0023 Score=78.43 Aligned_cols=137 Identities=16% Similarity=0.235 Sum_probs=80.0
Q ss_pred CceecchhhHHHHHHHhccCCCC---CCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSD---SPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAK 246 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 246 (930)
..++|.+..++.+...+.....+ ......++.++|+.|+|||++|+.+... ....-...+.+..+.-.....+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchH--
Confidence 45899999999999998753221 1234567889999999999999999862 2222223444445432221111
Q ss_pred HHHHHhcCCC--CCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCC-----------CCcEEEEEc
Q 002362 247 AIVEALDGHE--SRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGL-----------HRSKILVTT 313 (930)
Q Consensus 247 ~i~~~l~~~~--~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 313 (930)
.+-++.+. .+..+...+...++ +....+|+||++...+...+..+...+..+. ..+-||+||
T Consensus 641 --~~l~g~~~g~~g~~~~g~l~~~v~---~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TS 715 (852)
T TIGR03346 641 --ARLIGAPPGYVGYEEGGQLTEAVR---RKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 715 (852)
T ss_pred --HHhcCCCCCccCcccccHHHHHHH---cCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeC
Confidence 11122111 11111122222222 1223489999999888778888888775541 234478888
Q ss_pred CC
Q 002362 314 RK 315 (930)
Q Consensus 314 r~ 315 (930)
..
T Consensus 716 n~ 717 (852)
T TIGR03346 716 NL 717 (852)
T ss_pred Cc
Confidence 75
No 186
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.31 E-value=0.012 Score=58.62 Aligned_cols=182 Identities=20% Similarity=0.223 Sum_probs=106.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeC-CCccHHHHHHHHHHHhcCCCCCC--ccHHHHHHHHHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVS-ETFEEFRVAKAIVEALDGHESRL--GEFQSLIKHIYES 272 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~ 272 (930)
+.+++.++|.-|.|||.+++..... .. =+.++=|.+. ...+...+...|+..+..+.... ...++....+.+.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~--~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LN--EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cC--CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 5679999999999999999944321 11 1223324443 35667778888888887632211 1233344444443
Q ss_pred h-cCce-EEEEEeCccccCccChhhhhhhhcc---CCCCcEEEEEcCCh-------HHHhhhC-Ccce-EeCCCCChHHH
Q 002362 273 V-AGMC-FLLVLDDVWDGNYMKWEPFFHCLKN---GLHRSKILVTTRKK-------SVASMMG-STNI-ISIKELTEEEC 338 (930)
Q Consensus 273 l-~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~---~~~gs~iivTtr~~-------~v~~~~~-~~~~-~~l~~L~~~~~ 338 (930)
. +++| ..+++||......+..+.++-.... +...-+|+..-..+ .+.+..+ -... |++.|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 3 5777 8999999977554444444333221 11112244433221 1111111 1234 99999999999
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHhh
Q 002362 339 RLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSL 382 (930)
Q Consensus 339 ~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~ 382 (930)
..++..+..+...+..-. -.+....|..+..|.|.+|..++..
T Consensus 206 ~~yl~~~Le~a~~~~~l~-~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 206 GLYLRHRLEGAGLPEPLF-SDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHhccCCCcccC-ChhHHHHHHHHhccchHHHHHHHHH
Confidence 999888765543321111 1233566888999999999877643
No 187
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.31 E-value=0.0026 Score=60.95 Aligned_cols=139 Identities=14% Similarity=0.158 Sum_probs=77.2
Q ss_pred cchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHH------------------hcCCeEEEEEe
Q 002362 174 GRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVK------------------RKFDKILWVCV 235 (930)
Q Consensus 174 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~F~~~~wv~v 235 (930)
|-++..+.+.+.+.. +.-...+.++|..|+||+|+|..+.+.---. ....-..|+.-
T Consensus 1 gq~~~~~~L~~~~~~-----~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHC-----TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHc-----CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 445666777777653 2234578999999999999998887631100 11222333332
Q ss_pred CCC---ccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEE
Q 002362 236 SET---FEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVT 312 (930)
Q Consensus 236 s~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 312 (930)
... ..++++. ++...+.... ..+++=++|+||++......+..++..+-....++.+|++
T Consensus 76 ~~~~~~i~i~~ir-~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 76 DKKKKSIKIDQIR-EIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp TTSSSSBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred ccccchhhHHHHH-HHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 221 2222221 2222221111 1234558999999988888888888888888788998888
Q ss_pred cCChH-HHhh-hCCcceEeCCCCC
Q 002362 313 TRKKS-VASM-MGSTNIISIKELT 334 (930)
Q Consensus 313 tr~~~-v~~~-~~~~~~~~l~~L~ 334 (930)
|++.. +... ..-...+.+.+++
T Consensus 139 t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 139 TNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp ES-GGGS-HHHHTTSEEEEE----
T ss_pred ECChHHChHHHHhhceEEecCCCC
Confidence 88654 3332 2335567776654
No 188
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.30 E-value=0.00028 Score=68.67 Aligned_cols=101 Identities=21% Similarity=0.387 Sum_probs=52.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGM 276 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (930)
..-+.|+|..|+|||.||..+.+. -.... ..+.|+.+ .+++..+-.. .. .....+.. +.+..-
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~-~~~~g-~~v~f~~~------~~L~~~l~~~----~~-~~~~~~~~----~~l~~~ 109 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE-AIRKG-YSVLFITA------SDLLDELKQS----RS-DGSYEELL----KRLKRV 109 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH-HHHTT---EEEEEH------HHHHHHHHCC----HC-CTTHCHHH----HHHHTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH-hccCC-cceeEeec------Cceecccccc----cc-ccchhhhc----Cccccc
Confidence 356999999999999999999884 22222 34566654 3444444322 11 11222222 333332
Q ss_pred eEEEEEeCccccCccChhh--hhhhhccC-CCCcEEEEEcCCh
Q 002362 277 CFLLVLDDVWDGNYMKWEP--FFHCLKNG-LHRSKILVTTRKK 316 (930)
Q Consensus 277 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~~ 316 (930)
=||||||+-......|.. +...+... .++ .+||||...
T Consensus 110 -dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 110 -DLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp -SCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred -cEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 388899997654444432 33333221 223 588888854
No 189
>PRK12377 putative replication protein; Provisional
Probab=97.27 E-value=0.00058 Score=69.85 Aligned_cols=102 Identities=21% Similarity=0.154 Sum_probs=59.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGM 276 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (930)
...+.|+|.+|+|||.||..+++. .......++++++. +++..|-...... ..... +.+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~~----~~~~~----~l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDNG----QSGEK----FLQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhcc----chHHH----HHHHh-cC
Confidence 357899999999999999999994 44444456676654 4455554443211 11122 22333 33
Q ss_pred eEEEEEeCccccCccChhh--hhhhhccC-CCCcEEEEEcCC
Q 002362 277 CFLLVLDDVWDGNYMKWEP--FFHCLKNG-LHRSKILVTTRK 315 (930)
Q Consensus 277 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 315 (930)
-=||||||+.......|.. +...+... .+.--+||||..
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4599999996554445543 33333321 222347888874
No 190
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.27 E-value=0.0017 Score=66.33 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=59.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGM 276 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (930)
...+.++|.+|+|||+||..+++. ....-..++++++ .++...+-..+.. ....... +.+.+..
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~------~~l~~~l~~~~~~---~~~~~~~----~l~~l~~- 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITV------ADIMSAMKDTFSN---SETSEEQ----LLNDLSN- 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEH------HHHHHHHHHHHhh---ccccHHH----HHHHhcc-
Confidence 457899999999999999999984 3333345566643 4455554444321 1111222 2333443
Q ss_pred eEEEEEeCccccCccChhh--hhhhhccC-CCCcEEEEEcCC
Q 002362 277 CFLLVLDDVWDGNYMKWEP--FFHCLKNG-LHRSKILVTTRK 315 (930)
Q Consensus 277 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 315 (930)
.=+||+||+.......|.. +...+... ...-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 3388899997765556664 33333221 123447888874
No 191
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.25 E-value=0.00012 Score=86.09 Aligned_cols=129 Identities=22% Similarity=0.247 Sum_probs=85.1
Q ss_pred CcceeEEEEEecCCc--ccccc-ccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCccc
Q 002362 528 DEKVRHLLLIVGNGA--SFPVS-TCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRI 604 (930)
Q Consensus 528 ~~~~r~l~l~~~~~~--~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l 604 (930)
..+++|+.+.+...- ..+.. ...+|.|++|.+.+-.. ........+.+|++|+.||++ ++ ++..+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~-----~~~dF~~lc~sFpNL~sLDIS---~T----nI~nl 188 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF-----DNDDFSQLCASFPNLRSLDIS---GT----NISNL 188 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee-----cchhHHHHhhccCccceeecC---CC----CccCc
Confidence 456777777664322 11222 23578899998887642 222245667888999999999 44 55555
Q ss_pred CcccccCCCCCeeeccCCcccccc--cccccCCcccEEeccCCCCCcccccc-------ccccCCcceEeecCcc
Q 002362 605 PRNIERLVHLRYLNLSNQSIRKLP--DTLCELYNLQKLDISCCCKLKELPQG-------IGKLINMRHLLNYGTI 670 (930)
Q Consensus 605 p~~i~~L~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~~-------i~~L~~L~~L~l~~~~ 670 (930)
..|++|++|+.|.+++-.+..-+ ..+.+|++|++||+|...... .+.- -..|++||.|+.+++.
T Consensus 189 -~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 189 -SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred -HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcc
Confidence 67888899988888887766322 356788999999998765322 1211 1247888888888764
No 192
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.25 E-value=0.0077 Score=62.94 Aligned_cols=139 Identities=13% Similarity=0.139 Sum_probs=71.5
Q ss_pred EEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH--------HHh----cCCCCC-CccHHHH
Q 002362 199 IISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV--------EAL----DGHESR-LGEFQSL 265 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~--------~~l----~~~~~~-~~~~~~~ 265 (930)
-|.+.|.+|+|||+||+.++. ... ...+.++++...+..+++.... .++ ...... .....
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg---~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 95 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRD---RPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWV-- 95 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhC---CCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeec--
Confidence 467899999999999999976 221 2345566666555555443211 000 000000 00000
Q ss_pred HHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccC----------------CCCcEEEEEcCChHHHh-------hh
Q 002362 266 IKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNG----------------LHRSKILVTTRKKSVAS-------MM 322 (930)
Q Consensus 266 ~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~----------------~~gs~iivTtr~~~v~~-------~~ 322 (930)
...+....+ +...+++|++...+.+.+..+...+..+ .++.+||+|+.....+. ..
T Consensus 96 ~g~l~~A~~-~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~ 174 (262)
T TIGR02640 96 DNRLTLAVR-EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALL 174 (262)
T ss_pred CchHHHHHH-cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHH
Confidence 001111122 3468899999877666555566655321 13567888888542110 00
Q ss_pred CCcceEeCCCCChHHHHHHHHHH
Q 002362 323 GSTNIISIKELTEEECRLLFNKI 345 (930)
Q Consensus 323 ~~~~~~~l~~L~~~~~~~lf~~~ 345 (930)
.-...+.+...+.++=.+++.++
T Consensus 175 ~R~~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 175 DRLITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred hhcEEEECCCCCHHHHHHHHHHh
Confidence 11224555555655555566554
No 193
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.24 E-value=0.0045 Score=71.31 Aligned_cols=179 Identities=13% Similarity=0.131 Sum_probs=93.3
Q ss_pred CCceecchhhHHHHHHHhc---cCC---CCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHH
Q 002362 169 EEEICGRVDEKNELLSKLL---CES---SDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEF 242 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~---~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 242 (930)
-.+++|-++.++++.+.+. .+. ..+....+-+.++|++|+|||+||+.+++. .. .-++.++..
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~-----~~~~~i~~~---- 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AG-----VPFFSISGS---- 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cC-----CCeeeccHH----
Confidence 3468888776665554332 111 000223456889999999999999999873 21 123333321
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccC----------ccChhhh----hhhhc--cCCCC
Q 002362 243 RVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGN----------YMKWEPF----FHCLK--NGLHR 306 (930)
Q Consensus 243 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~l----~~~l~--~~~~g 306 (930)
++ .....+. ....+...+.......+.+|++||++.-. ...+... ...+. ....+
T Consensus 123 ~~----~~~~~g~-----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 123 DF----VEMFVGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HH----HHHHhcc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 11 1111110 11222333333444567899999995421 0112221 11121 12234
Q ss_pred cEEEEEcCChHHH-hhh----CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCc
Q 002362 307 SKILVTTRKKSVA-SMM----GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGL 372 (930)
Q Consensus 307 s~iivTtr~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~gl 372 (930)
-.||.||...... ..+ .-...+++...+.++-.++|+.+...... ....+ ...+++.+.|.
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~----l~~la~~t~G~ 259 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVD----LKAVARRTPGF 259 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccchh----HHHHHHhCCCC
Confidence 4566677654321 111 22567899999999999999887643221 11112 34677777773
No 194
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.23 E-value=0.0038 Score=60.48 Aligned_cols=44 Identities=25% Similarity=0.237 Sum_probs=35.9
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhc
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.++||-++.++++.-.-. +.+..-+.|.||+|+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHH
Confidence 468999998888776654 33677789999999999998887776
No 195
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.012 Score=62.53 Aligned_cols=93 Identities=10% Similarity=0.075 Sum_probs=67.6
Q ss_pred CceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCCh-HHHhhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCc
Q 002362 275 GMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKK-SVASMM-GSTNIISIKELTEEECRLLFNKIAFSDRPI 352 (930)
Q Consensus 275 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 352 (930)
+++=++|+|+++..+......+...+-....++.+|++|.+. .+...+ +-...+.+.+++++++.+.+.....
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~----- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGI----- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCC-----
Confidence 444589999998887778888888887777777766666554 444433 4477899999999999998876311
Q ss_pred hhhHHHHHHHHHHHHHcCCchhHHHHH
Q 002362 353 EEREKLEQIGRKIANKCKGLPLAAKII 379 (930)
Q Consensus 353 ~~~~~l~~~~~~i~~~c~glPLai~~~ 379 (930)
. .+..+++.++|.|+.+..+
T Consensus 182 ~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred c-------hHHHHHHHcCCCHHHHHHH
Confidence 1 1345788999999977554
No 196
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.011 Score=63.06 Aligned_cols=176 Identities=10% Similarity=0.043 Sum_probs=100.6
Q ss_pred HHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHh------
Q 002362 179 KNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEAL------ 252 (930)
Q Consensus 179 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l------ 252 (930)
.+.+...+.. +.-..-..+.|+.|+||+++|+.++.---=..... ...+..-..-+.+...-
T Consensus 11 ~~~l~~~~~~-----~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~ 78 (325)
T PRK06871 11 YQQITQAFQQ-----GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAGNHPDFHI 78 (325)
T ss_pred HHHHHHHHHc-----CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEE
Confidence 4455555543 22345778999999999999998876311000000 00000101111111000
Q ss_pred -cCCCCCCccHHHHHHHHHHHh-----cCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCCh-HHHhh-hCC
Q 002362 253 -DGHESRLGEFQSLIKHIYESV-----AGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKK-SVASM-MGS 324 (930)
Q Consensus 253 -~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~ 324 (930)
.........+++... +.+.+ .+++=++|+|+++..+......+...+-....++.+|++|.+. .+... .+-
T Consensus 79 i~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 79 LEPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred EccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 000011122333332 22222 3566688999999887777788888887777777777777654 44433 233
Q ss_pred cceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHH
Q 002362 325 TNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAA 376 (930)
Q Consensus 325 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai 376 (930)
...+.+.++++++..+.+...... ... .+...++.++|.|+.+
T Consensus 158 C~~~~~~~~~~~~~~~~L~~~~~~-----~~~----~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 158 CQTWLIHPPEEQQALDWLQAQSSA-----EIS----EILTALRINYGRPLLA 200 (325)
T ss_pred ceEEeCCCCCHHHHHHHHHHHhcc-----ChH----HHHHHHHHcCCCHHHH
Confidence 678999999999999988876421 111 1456778899999644
No 197
>PRK08118 topology modulation protein; Reviewed
Probab=97.19 E-value=0.00014 Score=70.14 Aligned_cols=34 Identities=35% Similarity=0.681 Sum_probs=26.8
Q ss_pred EEEEEecCCChHHHHHHHHhchHHHH-hcCCeEEE
Q 002362 199 IISIIGMGGMGKTTLAQLACNHEEVK-RKFDKILW 232 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 232 (930)
.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999853332 35677775
No 198
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.18 E-value=0.0011 Score=65.26 Aligned_cols=131 Identities=21% Similarity=0.215 Sum_probs=65.7
Q ss_pred cchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCC----Cc-----cHH--
Q 002362 174 GRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSE----TF-----EEF-- 242 (930)
Q Consensus 174 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~----~~-----~~~-- 242 (930)
.+..+....++.|. ...++.+.|++|.|||.||...+-+.-..+.|+.++++.-.- .. +..
T Consensus 4 p~~~~Q~~~~~al~--------~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALL--------NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHH--------H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHH--------hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 45566677777776 345899999999999999998888765667888888875211 00 000
Q ss_pred --HHHHHHHHHhcCCCCCCccHHHHHHHH------HHHhcCce---EEEEEeCccccCccChhhhhhhhccCCCCcEEEE
Q 002362 243 --RVAKAIVEALDGHESRLGEFQSLIKHI------YESVAGMC---FLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILV 311 (930)
Q Consensus 243 --~~~~~i~~~l~~~~~~~~~~~~~~~~l------~~~l~~kr---~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 311 (930)
..+.-+...+..-. .....+.+...= ..+++|+. .+||+|++.+... ..+...+...+.|||||+
T Consensus 76 ~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~---~~~k~ilTR~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTP---EELKMILTRIGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--H---HHHHHHHTTB-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCH---HHHHHHHcccCCCcEEEE
Confidence 01111222221110 111222222110 12344543 4999999987654 345555666778999999
Q ss_pred EcCCh
Q 002362 312 TTRKK 316 (930)
Q Consensus 312 Ttr~~ 316 (930)
+--..
T Consensus 152 ~GD~~ 156 (205)
T PF02562_consen 152 TGDPS 156 (205)
T ss_dssp EE---
T ss_pred ecCce
Confidence 87654
No 199
>PRK06921 hypothetical protein; Provisional
Probab=97.17 E-value=0.0021 Score=66.94 Aligned_cols=100 Identities=21% Similarity=0.331 Sum_probs=56.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhc-CCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRK-FDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAG 275 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 275 (930)
...+.++|..|+|||.||..+++. +... -..++|+... +++..+...+ +.... ..+.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~-~~~~~~- 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEA-KLNRMK- 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHH-HHHHhc-
Confidence 457899999999999999999984 3333 3456676652 3333332222 11111 122232
Q ss_pred ceEEEEEeCccc-----cCccChhh--hhhhhccC-CCCcEEEEEcCCh
Q 002362 276 MCFLLVLDDVWD-----GNYMKWEP--FFHCLKNG-LHRSKILVTTRKK 316 (930)
Q Consensus 276 kr~LlVlDdv~~-----~~~~~~~~--l~~~l~~~-~~gs~iivTtr~~ 316 (930)
+-=||||||+.. +....|.. +...+... ..+..+||||...
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~ 225 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELT 225 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 234999999932 22234543 43333321 2344588888743
No 200
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.16 E-value=0.0007 Score=68.08 Aligned_cols=37 Identities=35% Similarity=0.477 Sum_probs=30.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEe
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCV 235 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 235 (930)
.-.++|+|..|.|||||+..+.. .....|+.+++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 34688999999999999999987 47778977777654
No 201
>PRK09183 transposase/IS protein; Provisional
Probab=97.15 E-value=0.002 Score=66.87 Aligned_cols=101 Identities=21% Similarity=0.240 Sum_probs=54.0
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCce
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMC 277 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (930)
..+.|+|++|+|||+||..+.+. ....-..+.++. ..++...+...... ... ...+.+.+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~--a~~~G~~v~~~~------~~~l~~~l~~a~~~-----~~~---~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE--AVRAGIKVRFTT------AADLLLQLSTAQRQ-----GRY---KTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEe------HHHHHHHHHHHHHC-----CcH---HHHHHHHh-cCC
Confidence 46779999999999999999773 222222344443 22344333322211 011 12222222 344
Q ss_pred EEEEEeCccccCccChh--hhhhhhccC-CCCcEEEEEcCCh
Q 002362 278 FLLVLDDVWDGNYMKWE--PFFHCLKNG-LHRSKILVTTRKK 316 (930)
Q Consensus 278 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~~ 316 (930)
-++|+||+.......+. .+...+... ..++ +||||...
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 59999999764333333 244444321 2344 88888853
No 202
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.15 E-value=0.00038 Score=81.93 Aligned_cols=129 Identities=21% Similarity=0.128 Sum_probs=72.9
Q ss_pred CCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccccccccc
Q 002362 552 KRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPDTL 631 (930)
Q Consensus 552 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i 631 (930)
.+|+.|++.+.... ...++...-..+|.||.|.+.+-... -.++-.-..++++|+.||+|+|+|+.+ ..+
T Consensus 122 ~nL~~LdI~G~~~~----s~~W~~kig~~LPsL~sL~i~~~~~~-----~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI 191 (699)
T KOG3665|consen 122 QNLQHLDISGSELF----SNGWPKKIGTMLPSLRSLVISGRQFD-----NDDFSQLCASFPNLRSLDISGTNISNL-SGI 191 (699)
T ss_pred HhhhhcCccccchh----hccHHHHHhhhCcccceEEecCceec-----chhHHHHhhccCccceeecCCCCccCc-HHH
Confidence 56777777765432 22334555566777777777732111 111223344667777778888777777 567
Q ss_pred ccCCcccEEeccCCCCCcccc--ccccccCCcceEeecCccccccc--C----CcCCCCCCCCcCCce
Q 002362 632 CELYNLQKLDISCCCKLKELP--QGIGKLINMRHLLNYGTISLRYM--P----VGIGRLTSLRTLDEF 691 (930)
Q Consensus 632 ~~L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~--p----~~i~~l~~L~~L~~~ 691 (930)
++|++||+|.+++-. ...-+ ..+-.|++|++||++........ . ..-..|++|+.|+.+
T Consensus 192 S~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred hccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 777777777777543 22111 23566777777777765322111 0 001236677777644
No 203
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0068 Score=63.02 Aligned_cols=191 Identities=15% Similarity=0.152 Sum_probs=107.8
Q ss_pred cCCceecchhhHHHHHHHhccCCCC-------CCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCcc
Q 002362 168 DEEEICGRVDEKNELLSKLLCESSD-------SPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFE 240 (930)
Q Consensus 168 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 240 (930)
...++=|-++.+++|.+.+.-+-.+ +-+.++=|.+||++|.|||-||++|++ +....| +.|...
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgS-- 219 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGS-- 219 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccH--
Confidence 3445667888888888876443211 134677899999999999999999999 343333 333321
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc-CceEEEEEeCccccC--------------ccChhhhhhhhccC--
Q 002362 241 EFRVAKAIVEALDGHESRLGEFQSLIKHIYESVA-GMCFLLVLDDVWDGN--------------YMKWEPFFHCLKNG-- 303 (930)
Q Consensus 241 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~--------------~~~~~~l~~~l~~~-- 303 (930)
++++..-+ +...+.+.+.+.-+ .....|++|.++... +...-++...+...
T Consensus 220 ------ElVqKYiG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 220 ------ELVQKYIG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred ------HHHHHHhc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 12222211 22345555555444 557899999985310 11122333333322
Q ss_pred CCCcEEEEEcCChHHHhh--hC---CcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCch----h
Q 002362 304 LHRSKILVTTRKKSVASM--MG---STNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLP----L 374 (930)
Q Consensus 304 ~~gs~iivTtr~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glP----L 374 (930)
...-|||..|...++..- +. -++.+++..-+.+.-.++|+-++-.-. ....-+ .+.+++.|.|.- -
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~-l~~dvd----~e~la~~~~g~sGAdlk 362 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN-LADDVD----LELLARLTEGFSGADLK 362 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc-CccCcC----HHHHHHhcCCCchHHHH
Confidence 245688888876654322 22 266888886666667778876653321 122223 344566666643 3
Q ss_pred HHHHHHhhhc
Q 002362 375 AAKIIGSLMR 384 (930)
Q Consensus 375 ai~~~~~~l~ 384 (930)
|+.+=|++++
T Consensus 363 aictEAGm~A 372 (406)
T COG1222 363 AICTEAGMFA 372 (406)
T ss_pred HHHHHHhHHH
Confidence 4555555553
No 204
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.11 E-value=0.0044 Score=66.34 Aligned_cols=102 Identities=13% Similarity=0.055 Sum_probs=66.2
Q ss_pred hHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHh-cCCe-EEEEEeCC-CccHHHHHHHHHHHhcC
Q 002362 178 EKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKR-KFDK-ILWVCVSE-TFEEFRVAKAIVEALDG 254 (930)
Q Consensus 178 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~-~~wv~vs~-~~~~~~~~~~i~~~l~~ 254 (930)
...++++.+..-. .-..+.|+|.+|+|||||++.+++. +.. +-+. .+|+.+.+ ..++.++.+.+...+..
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 4556888876432 2345699999999999999999884 333 2244 46767765 45677888888777665
Q ss_pred CCCCCccHH-----HHHHHHHHHh--cCceEEEEEeCcc
Q 002362 255 HESRLGEFQ-----SLIKHIYESV--AGMCFLLVLDDVW 286 (930)
Q Consensus 255 ~~~~~~~~~-----~~~~~l~~~l--~~kr~LlVlDdv~ 286 (930)
...+..... .....+.+++ ++++.+||+|++.
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 432222111 1222333333 5899999999994
No 205
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.08 E-value=0.00033 Score=65.53 Aligned_cols=89 Identities=20% Similarity=0.198 Sum_probs=49.5
Q ss_pred EEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEE
Q 002362 200 ISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFL 279 (930)
Q Consensus 200 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~L 279 (930)
|.++|.+|+|||+||+.++.. . =....-+.++...+..++....--. ... .......+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~---~~~~~~i~~~~~~~~~dl~g~~~~~-~~~--~~~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--L---GRPVIRINCSSDTTEEDLIGSYDPS-NGQ--FEFKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--H---TCEEEEEE-TTTSTHHHHHCEEET--TTT--TCEEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--h---hcceEEEEeccccccccceeeeeec-ccc--cccccccccccc-----cceeE
Confidence 679999999999999999872 2 1234446777777777665322211 000 000000010011 17789
Q ss_pred EEEeCccccCccChhhhhhhhc
Q 002362 280 LVLDDVWDGNYMKWEPFFHCLK 301 (930)
Q Consensus 280 lVlDdv~~~~~~~~~~l~~~l~ 301 (930)
+|||++...+...+..+...+.
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHh
Confidence 9999998655444555555543
No 206
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.07 E-value=0.0013 Score=79.99 Aligned_cols=137 Identities=19% Similarity=0.264 Sum_probs=78.9
Q ss_pred CceecchhhHHHHHHHhccCCC---CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESS---DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAK 246 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 246 (930)
..++|.+..++.+.+.+..... .......++.++|+.|+|||.||+.+... .-+.....+-+.+++-.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~~---- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEAH---- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhhh----
Confidence 4689999999999998854311 11345678999999999999999988762 21212222223332211111
Q ss_pred HHHHHhcCCCC--CCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCC-----------CCcEEEEEc
Q 002362 247 AIVEALDGHES--RLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGL-----------HRSKILVTT 313 (930)
Q Consensus 247 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 313 (930)
.+.+-++.... +..+...+...++ +...-+|+||++...++..++.+...+..+. ..+-||+||
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TS 716 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTS 716 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeC
Confidence 11111221111 1111122323332 2444699999998877777777777776553 446677787
Q ss_pred CC
Q 002362 314 RK 315 (930)
Q Consensus 314 r~ 315 (930)
..
T Consensus 717 Nl 718 (852)
T TIGR03345 717 NA 718 (852)
T ss_pred CC
Confidence 75
No 207
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.06 E-value=0.028 Score=60.86 Aligned_cols=203 Identities=15% Similarity=0.134 Sum_probs=120.2
Q ss_pred chhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHH-HHHhchHHHHhcCCeEEEEEeCCC---ccHHHHHHHHHH
Q 002362 175 RVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLA-QLACNHEEVKRKFDKILWVCVSET---FEEFRVAKAIVE 250 (930)
Q Consensus 175 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~~~~i~~ 250 (930)
|.+..++|..||.... -..|.|.|+-|.||+.|+ .++..+ .+.+..+.|.+- .+-..+...++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~------r~~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKD------RKNVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhC------CCCEEEEEChHhhhccChHHHHHHHHH
Confidence 5678899999998543 369999999999999999 776653 233666665432 223344444544
Q ss_pred Hhc-----------------------CCCCC-CccHH-HHHHH-------HHH-------------------Hhc---Cc
Q 002362 251 ALD-----------------------GHESR-LGEFQ-SLIKH-------IYE-------------------SVA---GM 276 (930)
Q Consensus 251 ~l~-----------------------~~~~~-~~~~~-~~~~~-------l~~-------------------~l~---~k 276 (930)
+++ +...+ ..+.+ ++.+. |++ +|+ .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 442 11111 11122 11111 111 110 22
Q ss_pred eEEEEEeCccccCc---cChhhhhh---hhccCCCCcEEEEEcCChHHHhhh------CCcceEeCCCCChHHHHHHHHH
Q 002362 277 CFLLVLDDVWDGNY---MKWEPFFH---CLKNGLHRSKILVTTRKKSVASMM------GSTNIISIKELTEEECRLLFNK 344 (930)
Q Consensus 277 r~LlVlDdv~~~~~---~~~~~l~~---~l~~~~~gs~iivTtr~~~v~~~~------~~~~~~~l~~L~~~~~~~lf~~ 344 (930)
|-+||+|++-.... .-|+.+.. .+-. .+-.+||++|-+......+ ...+.+.|...+++.|..+...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 56899999954321 11222221 1222 3456799988876554432 2245788999999999999988
Q ss_pred HHcCCCCc------------hh----hHHHHHHHHHHHHHcCCchhHHHHHHhhhcCCCCHH
Q 002362 345 IAFSDRPI------------EE----REKLEQIGRKIANKCKGLPLAAKIIGSLMRSKETEE 390 (930)
Q Consensus 345 ~~~~~~~~------------~~----~~~l~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~ 390 (930)
+.-..... .. ......-....++..||--.-+..+++.++...+++
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 77543110 00 012233355678889999999999999998876654
No 208
>PRK06526 transposase; Provisional
Probab=97.06 E-value=0.0016 Score=67.23 Aligned_cols=101 Identities=22% Similarity=0.272 Sum_probs=54.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGM 276 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (930)
..-+.|+|++|+|||+||..+.+.. .+..+ .+.|+ +..++...+...... .... ..+.+ + .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a-~~~g~-~v~f~------t~~~l~~~l~~~~~~-----~~~~---~~l~~-l-~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA-CQAGH-RVLFA------TAAQWVARLAAAHHA-----GRLQ---AELVK-L-GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH-HHCCC-chhhh------hHHHHHHHHHHHHhc-----CcHH---HHHHH-h-cc
Confidence 3468999999999999999998742 22222 33343 233444444332211 1111 22222 2 23
Q ss_pred eEEEEEeCccccCccChh--hhhhhhcc-CCCCcEEEEEcCCh
Q 002362 277 CFLLVLDDVWDGNYMKWE--PFFHCLKN-GLHRSKILVTTRKK 316 (930)
Q Consensus 277 r~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~iivTtr~~ 316 (930)
.-+||+||+.......|. .+...+.. ...++ +|+||...
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 358999999754333332 23343332 12344 88888854
No 209
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.04 E-value=3.5e-05 Score=85.91 Aligned_cols=90 Identities=30% Similarity=0.361 Sum_probs=49.4
Q ss_pred cccCcccccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCcccccc-ccccCCcceEeecCcccccccCCcCC
Q 002362 602 TRIPRNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQG-IGKLINMRHLLNYGTISLRYMPVGIG 680 (930)
Q Consensus 602 ~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i~ 680 (930)
..+-.++.-+++|+.|||++|+++..- .+..|++|.+|||+.|. +..+|.. ...+ +|..|.+.+| .++.+ .+|.
T Consensus 177 ~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN-~l~tL-~gie 251 (1096)
T KOG1859|consen 177 VLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNN-ALTTL-RGIE 251 (1096)
T ss_pred HhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeeccc-HHHhh-hhHH
Confidence 333345555566666666666666554 45566666666666665 5555542 1222 3666666655 22222 3566
Q ss_pred CCCCCCcCCceEeCCC
Q 002362 681 RLTSLRTLDEFYVSGG 696 (930)
Q Consensus 681 ~l~~L~~L~~~~~~~~ 696 (930)
+|.+|+.|++.+|...
T Consensus 252 ~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLS 267 (1096)
T ss_pred hhhhhhccchhHhhhh
Confidence 6666666666555443
No 210
>PHA00729 NTP-binding motif containing protein
Probab=97.01 E-value=0.0041 Score=61.89 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHhch
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
+...|.|.|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999883
No 211
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.017 Score=62.85 Aligned_cols=149 Identities=21% Similarity=0.289 Sum_probs=89.3
Q ss_pred CCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh
Q 002362 194 PKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESV 273 (930)
Q Consensus 194 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 273 (930)
..++..+.+.|++|+|||+||..++. ...|..+=-++-.+-.. ..+......+...+...-
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~miG---------------~sEsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMIG---------------LSESAKCAHIKKIFEDAY 595 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHccC---------------ccHHHHHHHHHHHHHHhh
Confidence 34678889999999999999999975 45677554333211100 011112233344444555
Q ss_pred cCceEEEEEeCccccCccChhhh------------hhhhcc-CCCCcE--EEEEcCChHHHhhhCC----cceEeCCCCC
Q 002362 274 AGMCFLLVLDDVWDGNYMKWEPF------------FHCLKN-GLHRSK--ILVTTRKKSVASMMGS----TNIISIKELT 334 (930)
Q Consensus 274 ~~kr~LlVlDdv~~~~~~~~~~l------------~~~l~~-~~~gs~--iivTtr~~~v~~~~~~----~~~~~l~~L~ 334 (930)
++.--.||+||+.. .-+|-.+ .-.+.. ..+|-| |+-||....|.+.|+- ...|+++.++
T Consensus 596 kS~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 66667999999954 2344222 222222 223444 5567777888888764 4578899888
Q ss_pred h-HHHHHHHHHHH-cCCCCchhhHHHHHHHHHHHHHc
Q 002362 335 E-EECRLLFNKIA-FSDRPIEEREKLEQIGRKIANKC 369 (930)
Q Consensus 335 ~-~~~~~lf~~~~-~~~~~~~~~~~l~~~~~~i~~~c 369 (930)
. ++..+.+...- |. +.+.+.++++...+|
T Consensus 674 ~~~~~~~vl~~~n~fs------d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELNIFS------DDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHccCCC------cchhHHHHHHHhccc
Confidence 7 77777776643 32 233445566666666
No 212
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.99 E-value=0.031 Score=60.91 Aligned_cols=165 Identities=12% Similarity=0.152 Sum_probs=93.7
Q ss_pred hhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhc----C---CeEEEEEeCCCccHHHHHHHH
Q 002362 176 VDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRK----F---DKILWVCVSETFEEFRVAKAI 248 (930)
Q Consensus 176 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F---~~~~wv~vs~~~~~~~~~~~i 248 (930)
+.-.+.+.+.+...+ .....+|+|.|.=|+||||+.+.+.+. .+.. + ..-+|-....+.-...++.+|
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~--L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l 76 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEE--LKEDNKEKYIFIYFNAWEYDGEDDLWASFLEEL 76 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHH--HhcccccceeeEEEccccCCCcchHHHHHHHHH
Confidence 334566777776543 247889999999999999999999874 3333 1 122333333233344555555
Q ss_pred HHHhcCCC------------------------------C------------------------------------CCccH
Q 002362 249 VEALDGHE------------------------------S------------------------------------RLGEF 262 (930)
Q Consensus 249 ~~~l~~~~------------------------------~------------------------------------~~~~~ 262 (930)
..++.... . ...+.
T Consensus 77 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (325)
T PF07693_consen 77 FDQLEKHFGSKKIKLYAKKKLKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKEV 156 (325)
T ss_pred HHHHHHhcCccchhHHHhhhhhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHHH
Confidence 55542110 0 00011
Q ss_pred HHHHHHHHHHh--cCceEEEEEeCccccCccChhhhhhhhcc--CCCCcEEEEEcCChHHHhhhCC--------------
Q 002362 263 QSLIKHIYESV--AGMCFLLVLDDVWDGNYMKWEPFFHCLKN--GLHRSKILVTTRKKSVASMMGS-------------- 324 (930)
Q Consensus 263 ~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~~~-------------- 324 (930)
++....+.+.+ .++|.+||+||++..+++....+...+.. ..++..+|+..-.+.+...+..
T Consensus 157 ~~~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~y 236 (325)
T PF07693_consen 157 EELISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREY 236 (325)
T ss_pred HHHHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHH
Confidence 12344455555 36899999999998665544444444332 2367777777766665544322
Q ss_pred -----cceEeCCCCChHHHHHHHHHH
Q 002362 325 -----TNIISIKELTEEECRLLFNKI 345 (930)
Q Consensus 325 -----~~~~~l~~L~~~~~~~lf~~~ 345 (930)
..++.+++.+..+-..+|...
T Consensus 237 LeKiiq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 237 LEKIIQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred HHhhcCeEEEeCCCCHHHHHHHHHHH
Confidence 124666666666655555443
No 213
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.97 E-value=0.0015 Score=69.93 Aligned_cols=102 Identities=18% Similarity=0.319 Sum_probs=57.0
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCce
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMC 277 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (930)
.-+.++|..|+|||.||..+++. ....-..++|+++.+ ++..+....... ..+.... .+.+.+-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~~------l~~~l~~~~~~~---~~~~~~~----~~~l~~~- 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTADE------LIEILREIRFNN---DKELEEV----YDLLINC- 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHHH------HHHHHHHHHhcc---chhHHHH----HHHhccC-
Confidence 56999999999999999999994 333334566766533 333333211110 1111111 2223222
Q ss_pred EEEEEeCccccCccChh--hhhhhhccC-CCCcEEEEEcCC
Q 002362 278 FLLVLDDVWDGNYMKWE--PFFHCLKNG-LHRSKILVTTRK 315 (930)
Q Consensus 278 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~ 315 (930)
=||||||+..+....|. .+...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 38999999665444443 244333321 234568888885
No 214
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.016 Score=62.58 Aligned_cols=179 Identities=11% Similarity=0.082 Sum_probs=100.8
Q ss_pred hHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHH------
Q 002362 178 EKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEA------ 251 (930)
Q Consensus 178 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~------ 251 (930)
.-+++...+.. +.-..-+.+.|+.|+||+|+|..++..--=...-+. ..++.-..-+.+...
T Consensus 10 ~~~~l~~~~~~-----~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~ 77 (334)
T PRK07993 10 DYEQLVGSYQA-----GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGH-------KSCGHCRGCQLMQAGTHPDYY 77 (334)
T ss_pred HHHHHHHHHHc-----CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHHcCCCCCEE
Confidence 44566666643 234567889999999999999887652100000000 000000000001000
Q ss_pred -hcCCC-CCCccHHHHHHHHHH----HhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCC-hHHHhh-hC
Q 002362 252 -LDGHE-SRLGEFQSLIKHIYE----SVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRK-KSVASM-MG 323 (930)
Q Consensus 252 -l~~~~-~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~ 323 (930)
+.... .....+++....... ...+++=++|+|+++..+......+...+-....++.+|++|.+ ..+... .+
T Consensus 78 ~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 78 TLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred EEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 00000 011223333322221 12356669999999887777777888888777777777666665 445433 33
Q ss_pred CcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHH
Q 002362 324 STNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAK 377 (930)
Q Consensus 324 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~ 377 (930)
-...+.+.++++++..+.+.... + . .. +.+..+++.++|.|..+.
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~-~-~---~~----~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 158 RCRLHYLAPPPEQYALTWLSREV-T-M---SQ----DALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccccccCCCCCHHHHHHHHHHcc-C-C---CH----HHHHHHHHHcCCCHHHHH
Confidence 46789999999999988886542 1 1 11 115678899999997543
No 215
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.00043 Score=69.40 Aligned_cols=84 Identities=21% Similarity=0.187 Sum_probs=47.5
Q ss_pred CCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCccc-ccccCccEEEeeCCCCCC-C-C
Q 002362 741 MKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWM-MSLTNLRSLDLDDCENCE-K-L 817 (930)
Q Consensus 741 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~L~L~~~~~~~-~-l 817 (930)
++.++.|+|.||.++. ..++...+..+|.|+.|+|+.|.+...+ ..+ .-+.+|+.|.|.+..+.- . -
T Consensus 70 ~~~v~elDL~~N~iSd---------WseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~ 139 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISD---------WSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQST 139 (418)
T ss_pred hhhhhhhhcccchhcc---------HHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhh
Confidence 4566777777776654 2445556667777777777777654311 111 134567777776664321 1 1
Q ss_pred CCCCCCCCcceeeeccC
Q 002362 818 PPLGKLPSLEKLSISFM 834 (930)
Q Consensus 818 ~~l~~l~~L~~L~L~~~ 834 (930)
..+..+|.++.|.++.+
T Consensus 140 s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 140 SSLDDLPKVTELHMSDN 156 (418)
T ss_pred hhhhcchhhhhhhhccc
Confidence 22566666666666644
No 216
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.95 E-value=0.024 Score=55.69 Aligned_cols=109 Identities=19% Similarity=0.213 Sum_probs=67.4
Q ss_pred cCCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHH
Q 002362 168 DEEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKA 247 (930)
Q Consensus 168 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 247 (930)
+-..++|-+..++.+++--..=.. +..---|.+||.-|+||++|++.+.+ .+.+..-. -|.|+..
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~--------- 122 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE--------- 122 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH---------
Confidence 345689998888888764332222 23455689999999999999999998 45554433 2333221
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccc-cCccChhhhhhhhccC
Q 002362 248 IVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWD-GNYMKWEPFFHCLKNG 303 (930)
Q Consensus 248 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~ 303 (930)
+..++..+...++ ...+||.|+.||+.= +....+..+++.|-.+
T Consensus 123 ----------dl~~Lp~l~~~Lr--~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ 167 (287)
T COG2607 123 ----------DLATLPDLVELLR--ARPEKFILFCDDLSFEEGDDAYKALKSALEGG 167 (287)
T ss_pred ----------HHhhHHHHHHHHh--cCCceEEEEecCCCCCCCchHHHHHHHHhcCC
Confidence 1111222222221 247899999999943 3345667788877654
No 217
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.94 E-value=0.026 Score=60.73 Aligned_cols=93 Identities=13% Similarity=0.144 Sum_probs=66.1
Q ss_pred CceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCC-hHHHhh-hCCcceEeCCCCChHHHHHHHHHHHcCCCCc
Q 002362 275 GMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRK-KSVASM-MGSTNIISIKELTEEECRLLFNKIAFSDRPI 352 (930)
Q Consensus 275 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 352 (930)
+++=++|+|+++..+...+..+...+-...+++.+|++|.+ ..+... .+-...+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 45558899999998888888888888877777776655554 444433 3346789999999999999887742 1
Q ss_pred hhhHHHHHHHHHHHHHcCCchhHHHHH
Q 002362 353 EEREKLEQIGRKIANKCKGLPLAAKII 379 (930)
Q Consensus 353 ~~~~~l~~~~~~i~~~c~glPLai~~~ 379 (930)
.. ...++..++|.|..+..+
T Consensus 206 ~~-------~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 AD-------ADALLAEAGGAPLAALAL 225 (342)
T ss_pred Ch-------HHHHHHHcCCCHHHHHHH
Confidence 11 123567789999765444
No 218
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0019 Score=75.29 Aligned_cols=135 Identities=16% Similarity=0.302 Sum_probs=84.7
Q ss_pred CceecchhhHHHHHHHhccCCC---CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcC---CeEEEEEeCCCccHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESS---DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKF---DKILWVCVSETFEEFR 243 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~ 243 (930)
..++|.+..++.+.+.+..... +...++.+...+|+.|||||.||+.++. .-| +..+-+..|+-....
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~-----~Lfg~e~aliR~DMSEy~EkH- 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE-----ALFGDEQALIRIDMSEYMEKH- 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH-----HhcCCCccceeechHHHHHHH-
Confidence 4689999999999998865432 1245678889999999999999999876 234 334444444322211
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceE-EEEEeCccccCccChhhhhhhhccCC-----------CCcEEEE
Q 002362 244 VAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCF-LLVLDDVWDGNYMKWEPFFHCLKNGL-----------HRSKILV 311 (930)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiv 311 (930)
.+.+-++. .++-...++ -..+-+..+.++| +|.||++....++-.+-+...|.+|. ..+-||+
T Consensus 565 ---sVSrLIGa-PPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIIm 639 (786)
T COG0542 565 ---SVSRLIGA-PPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIM 639 (786)
T ss_pred ---HHHHHhCC-CCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEE
Confidence 12222232 222111111 2233455667777 88899998887777777888877652 2355777
Q ss_pred EcCC
Q 002362 312 TTRK 315 (930)
Q Consensus 312 Ttr~ 315 (930)
||.-
T Consensus 640 TSN~ 643 (786)
T COG0542 640 TSNA 643 (786)
T ss_pred eccc
Confidence 7774
No 219
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.91 E-value=0.0013 Score=67.84 Aligned_cols=103 Identities=20% Similarity=0.265 Sum_probs=58.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAG 275 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 275 (930)
...-+.++|.+|+|||.||..+.++ ....=-.+.++++ .+++.++....... . ....+.+.+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~------~el~~~Lk~~~~~~----~----~~~~l~~~l~~ 167 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITA------PDLLSKLKAAFDEG----R----LEEKLLRELKK 167 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhcC----c----hHHHHHHHhhc
Confidence 3456899999999999999999995 3333234556554 35666666555431 1 11222222222
Q ss_pred ceEEEEEeCccccCccChhh--hhhhhcc-CCCCcEEEEEcCCh
Q 002362 276 MCFLLVLDDVWDGNYMKWEP--FFHCLKN-GLHRSKILVTTRKK 316 (930)
Q Consensus 276 kr~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~~ 316 (930)
- =||||||+-......|.. +...+.. -...+- ++||...
T Consensus 168 ~-dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~-~~tsN~~ 209 (254)
T COG1484 168 V-DLLIIDDIGYEPFSQEEADLLFQLISRRYESRSL-IITSNLS 209 (254)
T ss_pred C-CEEEEecccCccCCHHHHHHHHHHHHHHHhhccc-eeecCCC
Confidence 1 299999997765556642 2222222 122232 7777643
No 220
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.90 E-value=0.0011 Score=62.95 Aligned_cols=80 Identities=29% Similarity=0.312 Sum_probs=61.9
Q ss_pred CCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCC--CCCCC
Q 002362 743 NLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCE--KLPPL 820 (930)
Q Consensus 743 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~--~l~~l 820 (930)
+...++|+.|.+.. +..+..+++|..|.+++|+++..-|.--..+++|..|.|.+|.+.+ ++.++
T Consensus 43 ~~d~iDLtdNdl~~-------------l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL 109 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK-------------LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL 109 (233)
T ss_pred ccceecccccchhh-------------cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh
Confidence 45667777776542 4556778999999999999988334433367899999999998654 67789
Q ss_pred CCCCCcceeeeccCc
Q 002362 821 GKLPSLEKLSISFMC 835 (930)
Q Consensus 821 ~~l~~L~~L~L~~~~ 835 (930)
..+|.|++|.+-+++
T Consensus 110 a~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNP 124 (233)
T ss_pred ccCCccceeeecCCc
Confidence 999999999998765
No 221
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.90 E-value=0.0085 Score=71.45 Aligned_cols=133 Identities=16% Similarity=0.198 Sum_probs=75.9
Q ss_pred ceecchhhHHHHHHHhccCCC---CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHH
Q 002362 171 EICGRVDEKNELLSKLLCESS---DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKA 247 (930)
Q Consensus 171 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 247 (930)
.++|.++.++.|...+..... ........+.++|+.|+|||++|+.++.. .. ...+.+.+++-.... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~---~~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hC---CCcEEeechhhcccc----c
Confidence 479999999999888863211 11234568999999999999999998773 21 233444444322211 1
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHhc-CceEEEEEeCccccCccChhhhhhhhccCC-----------CCcEEEEEcC
Q 002362 248 IVEALDGHESRLGEFQSLIKHIYESVA-GMCFLLVLDDVWDGNYMKWEPFFHCLKNGL-----------HRSKILVTTR 314 (930)
Q Consensus 248 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 314 (930)
+.+-++.+. .....+ ....+.+.++ ...-+|+||++.....+.+..+...+..+. ..+-||+||.
T Consensus 530 ~~~LiG~~~-gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN 606 (758)
T PRK11034 530 VSRLIGAPP-GYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_pred HHHHcCCCC-Cccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCC
Confidence 112222211 110000 0111222333 334599999998887777777777665431 2344777776
No 222
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.89 E-value=0.0038 Score=69.07 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=36.0
Q ss_pred ceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhc
Q 002362 171 EICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 171 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.++||++.++.+...+.... -|.|.|++|+|||++|+.+..
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHH
Confidence 48999999999999887543 489999999999999999987
No 223
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.89 E-value=0.0074 Score=65.81 Aligned_cols=145 Identities=15% Similarity=0.152 Sum_probs=86.3
Q ss_pred ceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHh-------------------cCCeEE
Q 002362 171 EICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKR-------------------KFDKIL 231 (930)
Q Consensus 171 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 231 (930)
.++|-+....++..+...... ...-+.++|++|+||||+|..+.+...-.. ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~----~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR----LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC----CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 457777888888888764321 233599999999999999999987411000 123344
Q ss_pred EEEeCCCcc---HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCCCCcE
Q 002362 232 WVCVSETFE---EFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSK 308 (930)
Q Consensus 232 wv~vs~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 308 (930)
.+..+.... ..+..+++.+....... .++.-++++|+++....+.-..+...+-.....+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 454444433 23333333333222110 35567999999987665555556666666667788
Q ss_pred EEEEcCCh-HHHhhh-CCcceEeCCCCCh
Q 002362 309 ILVTTRKK-SVASMM-GSTNIISIKELTE 335 (930)
Q Consensus 309 iivTtr~~-~v~~~~-~~~~~~~l~~L~~ 335 (930)
+|++|... .+...+ .....+++.+.+.
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCchH
Confidence 88888733 333322 2255777777333
No 224
>PRK04132 replication factor C small subunit; Provisional
Probab=96.85 E-value=0.017 Score=69.08 Aligned_cols=153 Identities=11% Similarity=0.010 Sum_probs=95.8
Q ss_pred cCCChHHHHHHHHhchHHHHhcC-CeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEe
Q 002362 205 MGGMGKTTLAQLACNHEEVKRKF-DKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLD 283 (930)
Q Consensus 205 ~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlD 283 (930)
+.++||||+|+.++++ -..+.+ ..++-+++|+...+.. .+++++.+....+. -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~-l~g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARE-LFGENWRHNFLELNASDERGINV-IREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHh-hhcccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 6789999999999884 112223 2466677776555543 33333332211100 01244699999
Q ss_pred CccccCccChhhhhhhhccCCCCcEEEEEcCCh-HHHhhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHH
Q 002362 284 DVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKK-SVASMM-GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQI 361 (930)
Q Consensus 284 dv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~ 361 (930)
+++..+..+...+...+-......++|++|.+. .+...+ .....+++.++++++-...+.+.+.......+ .+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~----~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC----HHH
Confidence 999887667777777776655566766655543 333332 33679999999999998888876543221111 234
Q ss_pred HHHHHHHcCCchhHHH
Q 002362 362 GRKIANKCKGLPLAAK 377 (930)
Q Consensus 362 ~~~i~~~c~glPLai~ 377 (930)
...|++.++|.+..+.
T Consensus 714 L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 714 LQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHcCCCHHHHH
Confidence 7789999999885443
No 225
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.84 E-value=0.0012 Score=70.37 Aligned_cols=51 Identities=14% Similarity=0.233 Sum_probs=43.6
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhch
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
.+++|.++.++++++++.....+.....+++.++|++|+||||||+.+.+.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 379999999999999997765433446789999999999999999999884
No 226
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.84 E-value=0.0047 Score=64.25 Aligned_cols=136 Identities=23% Similarity=0.282 Sum_probs=75.7
Q ss_pred eecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHH-HHhcCCeEEEE----EeCCCc-------
Q 002362 172 ICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEE-VKRKFDKILWV----CVSETF------- 239 (930)
Q Consensus 172 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv----~vs~~~------- 239 (930)
+-+|..+..--+++|+ ++.+..|.+.|.+|.|||-||-...-... .++.|..++-. .+.++.
T Consensus 226 i~prn~eQ~~ALdlLl------d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLL------DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhc------CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 4457777777788887 45789999999999999999876654432 23445433221 122211
Q ss_pred --cHHHHHHHHHHHhc----CCCCCCccHHHHHHH--H----HHHhcCce---EEEEEeCccccCccChhhhhhhhccCC
Q 002362 240 --EEFRVAKAIVEALD----GHESRLGEFQSLIKH--I----YESVAGMC---FLLVLDDVWDGNYMKWEPFFHCLKNGL 304 (930)
Q Consensus 240 --~~~~~~~~i~~~l~----~~~~~~~~~~~~~~~--l----~~~l~~kr---~LlVlDdv~~~~~~~~~~l~~~l~~~~ 304 (930)
.+.--++.|...+. ........++....+ + ..+.+|+. -+||+|...+-.+ ..++..+...+
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp---heikTiltR~G 376 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP---HELKTILTRAG 376 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH---HHHHHHHHhcc
Confidence 01111222222221 111111111111000 0 12334443 4899999976443 45677777888
Q ss_pred CCcEEEEEcCCh
Q 002362 305 HRSKILVTTRKK 316 (930)
Q Consensus 305 ~gs~iivTtr~~ 316 (930)
.||||+.|--..
T Consensus 377 ~GsKIVl~gd~a 388 (436)
T COG1875 377 EGSKIVLTGDPA 388 (436)
T ss_pred CCCEEEEcCCHH
Confidence 999999987643
No 227
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.84 E-value=0.013 Score=60.41 Aligned_cols=172 Identities=20% Similarity=0.189 Sum_probs=99.4
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcC-CeEEEEEeCCCccHH-HHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKF-DKILWVCVSETFEEF-RVAKA 247 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~-~~~~~ 247 (930)
..++|-.++..++-.++....- .++..-+.|+|+.|.|||+|.-.+..| .+.| +..+-|......... -.++.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHH
Confidence 4578988888888888754332 224456889999999999999888775 2233 344455555544332 24556
Q ss_pred HHHHhc----CCCCCCccHHHHHHHHHHHhc------CceEEEEEeCccccCccChhh-hhhhhc----cCCCCcEEEEE
Q 002362 248 IVEALD----GHESRLGEFQSLIKHIYESVA------GMCFLLVLDDVWDGNYMKWEP-FFHCLK----NGLHRSKILVT 312 (930)
Q Consensus 248 i~~~l~----~~~~~~~~~~~~~~~l~~~l~------~kr~LlVlDdv~~~~~~~~~~-l~~~l~----~~~~gs~iivT 312 (930)
|.+|+. .......+..+....+...|+ +-++++|+|.++-.-+..-.. +...|. ...+-+-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 666553 222223344444455555553 335888888885432111111 222222 12355667799
Q ss_pred cCChH-------HHhhhCCcceEeCCCCChHHHHHHHHHHH
Q 002362 313 TRKKS-------VASMMGSTNIISIKELTEEECRLLFNKIA 346 (930)
Q Consensus 313 tr~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 346 (930)
||-.. |-..+..-.++-++.++-++...++++..
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 99642 22233333356667777788888887754
No 228
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.84 E-value=0.0054 Score=61.93 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=38.0
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHH
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAK 246 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 246 (930)
..-+++.|+|.+|+|||++|.+++.. ....-..++|++... ++...+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 45689999999999999999998773 334457899999976 66655443
No 229
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.83 E-value=0.0039 Score=76.21 Aligned_cols=137 Identities=15% Similarity=0.192 Sum_probs=78.9
Q ss_pred CceecchhhHHHHHHHhccCCC---CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESS---DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAK 246 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 246 (930)
..++|.+..++.+...+..... +.......+.++|+.|+|||+||+.+++. .-..-...+-+..++-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH--
Confidence 4689999999999888753221 11234566789999999999999999762 2111123344444432221111
Q ss_pred HHHHHhcCCC--CCCccHHHHHHHHHHHhcCce-EEEEEeCccccCccChhhhhhhhccCC-----------CCcEEEEE
Q 002362 247 AIVEALDGHE--SRLGEFQSLIKHIYESVAGMC-FLLVLDDVWDGNYMKWEPFFHCLKNGL-----------HRSKILVT 312 (930)
Q Consensus 247 ~i~~~l~~~~--~~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 312 (930)
.+-++.+. .+..+... +.+.++.++ -+++||++...+...+..+...+..+. ..+-||+|
T Consensus 585 --~~l~g~~~gyvg~~~~~~----l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 585 --SKLIGSPPGYVGYNEGGQ----LTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred --HHhcCCCCcccCcCccch----HHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 11122111 11111222 233444444 489999998887777777777776541 34557777
Q ss_pred cCCh
Q 002362 313 TRKK 316 (930)
Q Consensus 313 tr~~ 316 (930)
|...
T Consensus 659 sn~g 662 (821)
T CHL00095 659 SNLG 662 (821)
T ss_pred CCcc
Confidence 7753
No 230
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.83 E-value=0.00051 Score=67.94 Aligned_cols=239 Identities=19% Similarity=0.129 Sum_probs=138.4
Q ss_pred ccccCCCCCeeeccCCccc-----ccccccccCCcccEEeccCCCC---Cccccc-------cccccCCcceEeecCccc
Q 002362 607 NIERLVHLRYLNLSNQSIR-----KLPDTLCELYNLQKLDISCCCK---LKELPQ-------GIGKLINMRHLLNYGTIS 671 (930)
Q Consensus 607 ~i~~L~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~---~~~lp~-------~i~~L~~L~~L~l~~~~~ 671 (930)
.+..+..+..++||+|.|. .+...|.+-.+|+..+++.-.. ..++|. .+-++++|+..++++|-.
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 3444677888888888876 3455566677788777765321 123333 345678888888888755
Q ss_pred ccccCCc----CCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCee
Q 002362 672 LRYMPVG----IGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCL 747 (930)
Q Consensus 672 ~~~~p~~----i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 747 (930)
....|+. |++-+.|.+|.+.+|+......+.++..+.+|...+ .....+.|+..
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nK----------------------Kaa~kp~Le~v 162 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNK----------------------KAADKPKLEVV 162 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHh----------------------hhccCCCceEE
Confidence 5555543 566778888887776655433333333333322211 23455777887
Q ss_pred EEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCccc--------ccccCccEEEeeCCCCCCCCC-
Q 002362 748 KLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWM--------MSLTNLRSLDLDDCENCEKLP- 818 (930)
Q Consensus 748 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~--------~~l~~L~~L~L~~~~~~~~l~- 818 (930)
....|.+.+. ........+..+.+|+.+.+..|.+. |..+ ..+.+|+.|+|.+|.++..-+
T Consensus 163 icgrNRleng-------s~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~ 232 (388)
T COG5238 163 ICGRNRLENG-------SKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSR 232 (388)
T ss_pred EeccchhccC-------cHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhHH
Confidence 7777766431 12223334556678888888887654 3322 256788888888887654221
Q ss_pred ----CCCCCCCcceeeeccCcCceEeCCccccCcccccCccccceeeccc------------------cccccceeeecc
Q 002362 819 ----PLGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWI------------------IMPRLSSLTFDS 876 (930)
Q Consensus 819 ----~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~------------------~lp~L~~L~l~~ 876 (930)
.+..-+.|+.|.+..|---..-...+...-....+|+|..|.+.++ .+|-|..|.+.+
T Consensus 233 ~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng 312 (388)
T COG5238 233 YLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG 312 (388)
T ss_pred HHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc
Confidence 1455566888888776411100001110001125677777776665 466666666666
Q ss_pred C
Q 002362 877 C 877 (930)
Q Consensus 877 c 877 (930)
|
T Consensus 313 N 313 (388)
T COG5238 313 N 313 (388)
T ss_pred C
Confidence 5
No 231
>PRK04296 thymidine kinase; Provisional
Probab=96.82 E-value=0.0029 Score=62.48 Aligned_cols=113 Identities=11% Similarity=0.000 Sum_probs=62.5
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCC--CccHHHHHHHHHHHhcC
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESR--LGEFQSLIKHIYESVAG 275 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 275 (930)
.++.|+|..|.||||+|..+.. +...+-..++.+. ..++.+.....+++.++..... ....+++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 4788999999999999988887 4444443444442 2222222233455555432211 2234455555544 333
Q ss_pred ceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChH
Q 002362 276 MCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKS 317 (930)
Q Consensus 276 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 317 (930)
+.-+||+|.+.--+.++...+...+ ...|..||+|.+...
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 4458999999532211122233322 345778999999754
No 232
>PRK07261 topology modulation protein; Provisional
Probab=96.81 E-value=0.0023 Score=61.95 Aligned_cols=65 Identities=23% Similarity=0.292 Sum_probs=39.4
Q ss_pred EEEEEecCCChHHHHHHHHhchHHHH-hcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCce
Q 002362 199 IISIIGMGGMGKTTLAQLACNHEEVK-RKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMC 277 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (930)
.|.|+|++|+||||||+.+.....+. -+.|...|-.. ....+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN---------------------WQERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc---------------------cccCCHHHHHHHHHHHHhCCC
Confidence 48999999999999999987531111 13344444111 112234455566666676665
Q ss_pred EEEEEeCcc
Q 002362 278 FLLVLDDVW 286 (930)
Q Consensus 278 ~LlVlDdv~ 286 (930)
.|+|+..
T Consensus 61 --wIidg~~ 67 (171)
T PRK07261 61 --WIIDGNY 67 (171)
T ss_pred --EEEcCcc
Confidence 5778874
No 233
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.79 E-value=0.062 Score=61.04 Aligned_cols=207 Identities=19% Similarity=0.160 Sum_probs=123.7
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHH---HHh---cCCeEEEEEeCCCccHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEE---VKR---KFDKILWVCVSETFEEFR 243 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~---~F~~~~wv~vs~~~~~~~ 243 (930)
..+-+|+.+..+|-+++..--++ +..-+.+.|.|.+|.|||..+..|.+... -++ .|+ .+.|..-.-....+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 34668999999998888654332 23445999999999999999999988532 112 233 23344444556889
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHhc-----CceEEEEEeCccccCccChhhhhhhhcc-CCCCcEEEEEcC--C
Q 002362 244 VAKAIVEALDGHESRLGEFQSLIKHIYESVA-----GMCFLLVLDDVWDGNYMKWEPFFHCLKN-GLHRSKILVTTR--K 315 (930)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr--~ 315 (930)
++..|..++.+.... .......+..+.. .+..++++|+++.--...-+.+...|.. ..++||++|-+= .
T Consensus 474 ~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 474 IYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 999999999875422 2222333333332 4457888888854211111233344443 346777554332 2
Q ss_pred hH---------HHhhhCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHhhh
Q 002362 316 KS---------VASMMGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLM 383 (930)
Q Consensus 316 ~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~l 383 (930)
.+ ++..+| ...+...|-+.++-.++...+..+... -.....+-++++|+.-.|-.-.|+...-++.
T Consensus 551 mdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~-f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDA-FENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred ccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhh-cchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 21 111122 235777888888888888776544321 2334455567777777777777776665555
No 234
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.77 E-value=0.0034 Score=55.43 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=19.1
Q ss_pred EEEEecCCChHHHHHHHHhch
Q 002362 200 ISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 200 i~I~G~gGiGKTtLa~~v~~~ 220 (930)
|.|+|.+|+|||+||+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998884
No 235
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.75 E-value=0.0054 Score=62.75 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=36.5
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHH
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRV 244 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 244 (930)
..-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++.+.+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 35679999999999999999999874 33445778999887 5555544
No 236
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.72 E-value=0.015 Score=62.48 Aligned_cols=89 Identities=12% Similarity=0.117 Sum_probs=48.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccH--HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEE--FRVAKAIVEALDGHESRLGEFQSLIKHIYESV 273 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 273 (930)
+.++|+++|++|+||||++..++.. ....=..+..+... .+.. .+-++.-++..+.+.....+...+...+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 4589999999999999999999873 33322234455543 2322 22233333333333222234455555454332
Q ss_pred cC-ceEEEEEeCccc
Q 002362 274 AG-MCFLLVLDDVWD 287 (930)
Q Consensus 274 ~~-kr~LlVlDdv~~ 287 (930)
.. +.=+|++|-.-.
T Consensus 317 ~~~~~DvVLIDTaGR 331 (436)
T PRK11889 317 EEARVDYILIDTAGK 331 (436)
T ss_pred hccCCCEEEEeCccc
Confidence 21 223778888754
No 237
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.71 E-value=0.0063 Score=68.15 Aligned_cols=189 Identities=17% Similarity=0.201 Sum_probs=111.1
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
++++|-+.....|...+... .-..--...|+-|+||||+|+.++.-. .+ .-| ...+.+..-..-+.|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~-----ri~hAYlfsG~RGvGKTt~Ari~Akal----NC--~~~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENG-----RIAHAYLFSGPRGVGKTTIARILAKAL----NC--ENG-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhC-----cchhhhhhcCCCCcCchhHHHHHHHHh----cC--CCC-CCCCcchhhhhhHhhh
Confidence 35799999999999988642 223445678999999999999887621 11 111 1122222222223332
Q ss_pred HH--hc------CCCCCCccHHHHHHHHHHH-hcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEE-cCChHHH
Q 002362 250 EA--LD------GHESRLGEFQSLIKHIYES-VAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVT-TRKKSVA 319 (930)
Q Consensus 250 ~~--l~------~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT-tr~~~v~ 319 (930)
.. +. .......++.++.+.+.-. .+++-=+.|+|.|.......|..+..-+-......+.|+. |-...+.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 22 00 0111122222222222111 1344458899999887777888887777766666665554 4444444
Q ss_pred hh-hCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchh
Q 002362 320 SM-MGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPL 374 (930)
Q Consensus 320 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPL 374 (930)
.. .+-.+.|.++.++.++-...+...+-......+ .+....|++..+|...
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCCChh
Confidence 33 455789999999999999988887754433222 2235557777777554
No 238
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.71 E-value=0.0084 Score=72.70 Aligned_cols=180 Identities=13% Similarity=0.098 Sum_probs=93.3
Q ss_pred CCceecchhhHHHHHHHhccCCCC-------CCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccH
Q 002362 169 EEEICGRVDEKNELLSKLLCESSD-------SPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEE 241 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 241 (930)
-+++.|.+..++++.+++..+-.. +-...+-+.++|++|+||||||+.+++. .... ++.++..
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~-----~i~i~~~--- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAY-----FISINGP--- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCe-----EEEEecH---
Confidence 345889999999888876422100 0123467889999999999999999873 3222 2233211
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCcc-----------ChhhhhhhhccC-CCCcEE
Q 002362 242 FRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYM-----------KWEPFFHCLKNG-LHRSKI 309 (930)
Q Consensus 242 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l~~~-~~gs~i 309 (930)
++ ..... ......+...+.........+|++|+++..... ....+...+... ..+..+
T Consensus 247 -~i----~~~~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 -EI----MSKYY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred -HH----hcccc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 11 11000 011122233333334456679999998542110 012233333221 223334
Q ss_pred EE-EcCChH-HHhhhC----CcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCch
Q 002362 310 LV-TTRKKS-VASMMG----STNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLP 373 (930)
Q Consensus 310 iv-Ttr~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glP 373 (930)
+| ||.... +...+. -...+.+...+.++..++++.+.-.... ..... ...+++.+.|.-
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d~~----l~~la~~t~G~~ 381 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AEDVD----LDKLAEVTHGFV 381 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-ccccC----HHHHHHhCCCCC
Confidence 44 554332 211111 1456788888999888888865422111 11111 456777787764
No 239
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.66 E-value=0.015 Score=54.72 Aligned_cols=117 Identities=17% Similarity=0.132 Sum_probs=66.1
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCC---CccHHHHHHHHHHHh-----cCC-----CCCCcc---
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSE---TFEEFRVAKAIVEAL-----DGH-----ESRLGE--- 261 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~~~l-----~~~-----~~~~~~--- 261 (930)
..|-|++..|.||||+|...+- +...+=-.+.+|..-. ......+++.+- .+ +.. .....+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 4688888889999999988776 4444434455554432 233344333330 01 000 000011
Q ss_pred HHHHHHHHHHHhcCce-EEEEEeCcccc---CccChhhhhhhhccCCCCcEEEEEcCChH
Q 002362 262 FQSLIKHIYESVAGMC-FLLVLDDVWDG---NYMKWEPFFHCLKNGLHRSKILVTTRKKS 317 (930)
Q Consensus 262 ~~~~~~~l~~~l~~kr-~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 317 (930)
..+..+..++.+.... =|+|||++-.. .....+.+...+.....+.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1122233334444433 49999998542 22344677777777777788999999853
No 240
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.64 E-value=0.021 Score=61.31 Aligned_cols=71 Identities=10% Similarity=0.115 Sum_probs=47.6
Q ss_pred CceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCCh-HHHhhh-CCcceEeCCCCChHHHHHHHHHH
Q 002362 275 GMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKK-SVASMM-GSTNIISIKELTEEECRLLFNKI 345 (930)
Q Consensus 275 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 345 (930)
+++-++|+|++...+...-..+...+.....+..+|++|.+. .+...+ .....+.+.+++.+++.+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 444456678887766555566666666554556677777664 344332 23678999999999999888664
No 241
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.021 Score=63.34 Aligned_cols=178 Identities=16% Similarity=0.186 Sum_probs=98.6
Q ss_pred CceecchhhHHHHHHHhccCCCC------CCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSD------SPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFR 243 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 243 (930)
.++=|.++.+.++.+++..-... +-...+=|.++|++|.|||.||+.+++. .. +-++.++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~-----vPf~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LG-----VPFLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cC-----CceEeecch-----
Confidence 35667888777777766432211 1345677999999999999999999984 22 233444332
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCc------cCh-----hhhhhhhcc----CCCCcE
Q 002362 244 VAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNY------MKW-----EPFFHCLKN----GLHRSK 308 (930)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------~~~-----~~l~~~l~~----~~~gs~ 308 (930)
+|+....+ .+.+.+.+.+.+....-++++++|+++-..+ .+. .++...+.. ...|-.
T Consensus 258 ---eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 258 ---EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred ---hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 23333322 2233344444555677889999999964211 111 223333221 112333
Q ss_pred EEE---EcCChHHHhh---hCC-cceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCc
Q 002362 309 ILV---TTRKKSVASM---MGS-TNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGL 372 (930)
Q Consensus 309 iiv---Ttr~~~v~~~---~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~gl 372 (930)
||| |+|...+-.. .|. .+-+.+.--+++.-.++++..+-+-.-.. .-+ .++|++..-|.
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d----~~qlA~lTPGf 395 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFD----FKQLAKLTPGF 395 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcC----HHHHHhcCCCc
Confidence 333 5554433222 232 55788888888888888877664433211 122 34566666553
No 242
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.62 E-value=0.008 Score=69.41 Aligned_cols=45 Identities=29% Similarity=0.376 Sum_probs=36.4
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhch
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
.+++|.+..++.+...+... ...-+.|+|.+|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999998876532 2345789999999999999999863
No 243
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.61 E-value=0.0047 Score=60.44 Aligned_cols=36 Identities=31% Similarity=0.558 Sum_probs=29.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEE
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWV 233 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 233 (930)
...+|.|.|+.|+||||+|+.++. .....+..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 456999999999999999999988 555566666655
No 244
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.58 E-value=0.01 Score=61.06 Aligned_cols=88 Identities=19% Similarity=0.146 Sum_probs=54.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCC-eEEEEEeCCCc-cHHHHHHHHHHHhcCC-------CCCCccHH----
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFD-KILWVCVSETF-EEFRVAKAIVEALDGH-------ESRLGEFQ---- 263 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 263 (930)
-+.++|+|..|+|||||++.+++ .++.+|+ .++++-+.+.. .+.++..++.+.-... ..+.....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 45799999999999999999999 5655664 55666666544 3445555554421111 11111111
Q ss_pred -HHHHHHHHHh--c-CceEEEEEeCcc
Q 002362 264 -SLIKHIYESV--A-GMCFLLVLDDVW 286 (930)
Q Consensus 264 -~~~~~l~~~l--~-~kr~LlVlDdv~ 286 (930)
...-.+.+++ + ++.+|+++||+-
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 2233345555 3 899999999983
No 245
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.029 Score=63.43 Aligned_cols=155 Identities=15% Similarity=0.062 Sum_probs=85.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCc--cHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETF--EEFRVAKAIVEALDGHESRLGEFQSLIKHIYESV 273 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 273 (930)
...-|.|.|..|+|||+||+.+++... +++.-.+.+|+++.-. ..+.+++.+ ...+.+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l-----------------~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL-----------------NNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH-----------------HHHHHHHH
Confidence 345689999999999999999998533 5555667778776522 222222222 22334456
Q ss_pred cCceEEEEEeCccc------cCccChhh----hhhhhc-----cCCCCcE--EEEEcCChHHHh-hhC-C---cceEeCC
Q 002362 274 AGMCFLLVLDDVWD------GNYMKWEP----FFHCLK-----NGLHRSK--ILVTTRKKSVAS-MMG-S---TNIISIK 331 (930)
Q Consensus 274 ~~kr~LlVlDdv~~------~~~~~~~~----l~~~l~-----~~~~gs~--iivTtr~~~v~~-~~~-~---~~~~~l~ 331 (930)
...+-+|||||++- .+..+|.. +..++. ....+.+ +|.|.....-.. ... + .....+.
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 67788999999953 11223321 222221 1233444 444444332211 111 1 3467888
Q ss_pred CCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCc
Q 002362 332 ELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGL 372 (930)
Q Consensus 332 ~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~gl 372 (930)
.+...+-.++++...-.........+ ..-++.+|+|.
T Consensus 572 ap~~~~R~~IL~~~~s~~~~~~~~~d----Ld~ls~~TEGy 608 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNLSDITMDD----LDFLSVKTEGY 608 (952)
T ss_pred CcchhHHHHHHHHHHHhhhhhhhhHH----HHHHHHhcCCc
Confidence 99888888887765432221111122 22277888774
No 246
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.54 E-value=0.023 Score=68.91 Aligned_cols=179 Identities=15% Similarity=0.194 Sum_probs=93.5
Q ss_pred CceecchhhHHHHHHHhccCCCC-------CCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSD-------SPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEF 242 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 242 (930)
.++.|.+..++.+.+.+.-+-.. +-...+-+.++|++|+|||++|+.+++. ....| +.++..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH----
Confidence 45778887777777665321110 0123455889999999999999999883 22222 223211
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccC------c-cCh-----hhhhhhhcc--CCCCcE
Q 002362 243 RVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGN------Y-MKW-----EPFFHCLKN--GLHRSK 308 (930)
Q Consensus 243 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------~-~~~-----~~l~~~l~~--~~~gs~ 308 (930)
+++...-+ .....+...+...-...+.+|++|+++.-. . ... ..+...+.. ...+--
T Consensus 522 ----~l~~~~vG-----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 ----EILSKWVG-----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred ----HHhhcccC-----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 11111111 111122222333334667899999985321 0 011 112222322 123445
Q ss_pred EEEEcCChHHHh-h-h---CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCch
Q 002362 309 ILVTTRKKSVAS-M-M---GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLP 373 (930)
Q Consensus 309 iivTtr~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glP 373 (930)
||.||...+... . + .-...+.+...+.++..++|+.+.-+.. ....-+ ...+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~-~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP-LAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC-CCccCC----HHHHHHHcCCCC
Confidence 666776554322 1 1 1256788999999999999976543221 111112 344666776643
No 247
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.54 E-value=0.013 Score=56.36 Aligned_cols=40 Identities=35% Similarity=0.476 Sum_probs=30.4
Q ss_pred EEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCcc
Q 002362 199 IISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFE 240 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 240 (930)
++.|+|.+|+||||+++.+... ....-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 4689999999999999999873 333445788888766543
No 248
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.54 E-value=0.0095 Score=60.62 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=33.7
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCcc
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFE 240 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 240 (930)
..-.++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 35689999999999999999999873 333345688888765554
No 249
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.51 E-value=0.0065 Score=68.77 Aligned_cols=88 Identities=20% Similarity=0.272 Sum_probs=61.8
Q ss_pred CCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh
Q 002362 194 PKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESV 273 (930)
Q Consensus 194 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 273 (930)
.+.-+++.++|++|+||||||+-+++. ..| .++=|.+|+..+...+-..|...+.... .+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkq----aGY-sVvEINASDeRt~~~v~~kI~~avq~~s---------------~l 382 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQ----AGY-SVVEINASDERTAPMVKEKIENAVQNHS---------------VL 382 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHh----cCc-eEEEecccccccHHHHHHHHHHHHhhcc---------------cc
Confidence 456789999999999999999988762 122 4677888988888877777776654432 22
Q ss_pred --cCceEEEEEeCccccCccChhhhhhhhc
Q 002362 274 --AGMCFLLVLDDVWDGNYMKWEPFFHCLK 301 (930)
Q Consensus 274 --~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 301 (930)
.+++..+|+|.++-......+.+.+.+.
T Consensus 383 ~adsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 383 DADSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred ccCCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 2677889999997654333444554443
No 250
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.50 E-value=0.027 Score=55.76 Aligned_cols=159 Identities=16% Similarity=0.140 Sum_probs=88.4
Q ss_pred cCCceecchhhHH---HHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHH
Q 002362 168 DEEEICGRVDEKN---ELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRV 244 (930)
Q Consensus 168 ~~~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 244 (930)
.-+++||.++.+. -|+++|..+..-++=.++-|..+|++|.|||.+|+.+++... -. ++.+..
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k--vp-----~l~vka------- 184 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK--VP-----LLLVKA------- 184 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC--Cc-----eEEech-------
Confidence 3456899876544 466667654432233578899999999999999999999422 11 222211
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHH-hcCceEEEEEeCccccC-----c---cChhh----hhhhhcc--CCCCcEE
Q 002362 245 AKAIVEALDGHESRLGEFQSLIKHIYES-VAGMCFLLVLDDVWDGN-----Y---MKWEP----FFHCLKN--GLHRSKI 309 (930)
Q Consensus 245 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~-----~---~~~~~----l~~~l~~--~~~gs~i 309 (930)
..-|.+.. .+....+..+.+. -+.-++++++|.++-.. + -+... +..-+.. .+.|...
T Consensus 185 t~liGehV-------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 185 TELIGEHV-------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred HHHHHHHh-------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 11122211 1222233333332 24567899999885311 0 01112 2222221 2356666
Q ss_pred EEEcCChHHHhh-hC--CcceEeCCCCChHHHHHHHHHHHc
Q 002362 310 LVTTRKKSVASM-MG--STNIISIKELTEEECRLLFNKIAF 347 (930)
Q Consensus 310 ivTtr~~~v~~~-~~--~~~~~~l~~L~~~~~~~lf~~~~~ 347 (930)
|-.|...+.... +. -.+-++...-+++|-.+++...+-
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK 298 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHH
Confidence 666666554332 21 245677778889999999888763
No 251
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.50 E-value=0.02 Score=64.78 Aligned_cols=159 Identities=15% Similarity=0.090 Sum_probs=82.5
Q ss_pred CceecchhhHHHHHHHhc---cC-CCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHH
Q 002362 170 EEICGRVDEKNELLSKLL---CE-SSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVA 245 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~---~~-~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 245 (930)
.++-|.+..++.+..... .. ..-+-...+-|.++|++|.|||.+|+.+++. ..-.| +-+.++ .+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~------~l~ 296 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVG------KLF 296 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhH------Hhc
Confidence 356777665555543211 00 0001234567899999999999999999883 22221 112211 111
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCc--c-----Ch-----hhhhhhhccCCCCcEEEEEc
Q 002362 246 KAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNY--M-----KW-----EPFFHCLKNGLHRSKILVTT 313 (930)
Q Consensus 246 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~-----~~-----~~l~~~l~~~~~gs~iivTt 313 (930)
... .+ .....+.+.+...-...+++|++|+++..-. . .+ ..+...+.....+.-||.||
T Consensus 297 ----~~~----vG-ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 297 ----GGI----VG-ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred ----ccc----cC-hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 000 00 1111222222222345789999999964210 0 01 11222233333344466677
Q ss_pred CChHH-Hhhh----CCcceEeCCCCChHHHHHHHHHHHcC
Q 002362 314 RKKSV-ASMM----GSTNIISIKELTEEECRLLFNKIAFS 348 (930)
Q Consensus 314 r~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~ 348 (930)
..... -..+ .-+..+.++..+.++-.++|+.+...
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 65432 1111 22568889999999999999887644
No 252
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.49 E-value=0.0047 Score=59.37 Aligned_cols=133 Identities=20% Similarity=0.139 Sum_probs=66.0
Q ss_pred eecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHH
Q 002362 172 ICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEA 251 (930)
Q Consensus 172 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 251 (930)
+||....+.++++.+..... ...-|.|+|..|+||+.+|+.+++. -...-..-+-|+++. .+.+.+..++...
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~--s~r~~~pfi~vnc~~-~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNN--SPRKNGPFISVNCAA-LPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHC--STTTTS-EEEEETTT-S-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHh--hhcccCCeEEEehhh-hhcchhhhhhhcc
Confidence 46888888888887765443 2245779999999999999999873 111112233344443 2333333333221
Q ss_pred hcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccC------C-----CCcEEEEEcCCh
Q 002362 252 LDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNG------L-----HRSKILVTTRKK 316 (930)
Q Consensus 252 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------~-----~gs~iivTtr~~ 316 (930)
-.+...+.... ....+ +.- ..=-|+||++..-....-..+...+..+ . -..|||.||...
T Consensus 74 ~~~~~~~~~~~--~~G~l-~~A--~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 74 EKGAFTGARSD--KKGLL-EQA--NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp CSSSSTTTSSE--BEHHH-HHT--TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ccccccccccc--cCCce-eec--cceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 11111111000 00111 111 1226789999876544445566665432 1 246888888853
No 253
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.42 E-value=0.012 Score=61.14 Aligned_cols=57 Identities=25% Similarity=0.333 Sum_probs=41.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhc----CCeEEEEEeCCCccHHHHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRK----FDKILWVCVSETFEEFRVAKAIVEALD 253 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~ 253 (930)
.-.+.=|+|.+|+|||.|+..++-...+... =..++|++....|+.+++. +|++..+
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 4568999999999999999877653232221 2469999999999888775 5666553
No 254
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.41 E-value=0.0023 Score=58.20 Aligned_cols=21 Identities=43% Similarity=0.547 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
||.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 255
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.39 E-value=0.015 Score=59.46 Aligned_cols=89 Identities=20% Similarity=0.171 Sum_probs=54.1
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHhcC------CeEEEEEeCCCccHHHHHHHHHHHhcCCC---------CCC
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKRKF------DKILWVCVSETFEEFRVAKAIVEALDGHE---------SRL 259 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------~~~ 259 (930)
..-.++.|+|.+|+|||+||..++.. ....- ..++|+.....++...+. .+.+...... ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 35679999999999999999988763 22233 568999988777765543 3333322110 011
Q ss_pred ccHHHHHHHHHHHhc----CceEEEEEeCcc
Q 002362 260 GEFQSLIKHIYESVA----GMCFLLVLDDVW 286 (930)
Q Consensus 260 ~~~~~~~~~l~~~l~----~kr~LlVlDdv~ 286 (930)
.+.+++...+.+... .+.-|+|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 234444444444332 334488888874
No 256
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.38 E-value=0.00033 Score=81.34 Aligned_cols=150 Identities=23% Similarity=0.286 Sum_probs=81.1
Q ss_pred ccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCC
Q 002362 736 LELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCE 815 (930)
Q Consensus 736 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~ 815 (930)
+....+++|+.|+++++.... +..+......+++|+.|.+.+... ++.++.+.+..+....
T Consensus 289 ~i~~~~~~L~~L~l~~c~~~~---------d~~l~~~~~~c~~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~ 349 (482)
T KOG1947|consen 289 SIAERCPSLRELDLSGCHGLT---------DSGLEALLKNCPNLRELKLLSLNG----------CPSLTDLSLSGLLTLT 349 (482)
T ss_pred HHHHhcCcccEEeeecCccch---------HHHHHHHHHhCcchhhhhhhhcCC----------CccHHHHHHHHhhccC
Confidence 345567778888888765432 122333344566666655544322 3455555555543322
Q ss_pred --CCCC--CCCCCCcceeeeccCcCceEeCCccccCcccccCccc-cceeeccccccccceeeeccCCccCCCCC-CC-C
Q 002362 816 --KLPP--LGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKL-KSLTISWIIMPRLSSLTFDSCPKLKALPD-HF-H 888 (930)
Q Consensus 816 --~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L-~~L~l~~~~lp~L~~L~l~~c~~L~~lp~-~l-~ 888 (930)
.+.. +..+++|+.+.+.+|. ....+... ...++|.| ..+.......++|+.|.+..|...+.--. .. .
T Consensus 350 ~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~----~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~ 424 (482)
T KOG1947|consen 350 SDDLAELILRSCPKLTDLSLSYCG-ISDLGLEL----SLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLAD 424 (482)
T ss_pred chhHhHHHHhcCCCcchhhhhhhh-ccCcchHH----HhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhh
Confidence 2221 5567777777777665 33222111 11267777 44433333455588888888865543210 01 1
Q ss_pred CCCCccEEEEecCchhhHHhhc
Q 002362 889 QTTTLKEFNIGWNCGLLEKRYR 910 (930)
Q Consensus 889 ~l~~L~~L~l~~nc~~l~~~~~ 910 (930)
.+.++..+++.+ |+.+.....
T Consensus 425 ~~~~~~~l~~~~-~~~~~~~~~ 445 (482)
T KOG1947|consen 425 SCSNLKDLDLSG-CRVITLKSL 445 (482)
T ss_pred hhhccccCCccC-cccccchhh
Confidence 166788888888 877665543
No 257
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.36 E-value=0.0029 Score=59.02 Aligned_cols=108 Identities=15% Similarity=0.126 Sum_probs=61.1
Q ss_pred ecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHH-HhcCCeEEEEEeCCCccHHHHHHHHHHH
Q 002362 173 CGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEV-KRKFDKILWVCVSETFEEFRVAKAIVEA 251 (930)
Q Consensus 173 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 251 (930)
||+-..++++.+.+..-.. ....|.|+|..|+||+++|+.++..... ...|.. +.+.. .. .+
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~-~~-----~~---- 63 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCAS-LP-----AE---- 63 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHC-TC-----HH----
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhh-Cc-----HH----
Confidence 4666666677666654322 3356899999999999999988773211 011111 00111 00 11
Q ss_pred hcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccC-CCCcEEEEEcCCh
Q 002362 252 LDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNG-LHRSKILVTTRKK 316 (930)
Q Consensus 252 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtr~~ 316 (930)
+.+.. +.--|+|+|+..-+......+...+... ....|+|.||+..
T Consensus 64 -----------------~l~~a--~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 64 -----------------LLEQA--KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp -----------------HHHHC--TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred -----------------HHHHc--CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 11111 3335789999876655556677777643 5678999999854
No 258
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.33 E-value=0.0049 Score=58.74 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=32.2
Q ss_pred CcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCCCC-CCCCcceeeeccC
Q 002362 778 NLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPPLG-KLPSLEKLSISFM 834 (930)
Q Consensus 778 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~-~l~~L~~L~L~~~ 834 (930)
+...+++++|.+.. + .-+..++.|..|.|.+|.++..-|.++ .+|+|+.|.|.++
T Consensus 43 ~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 44556666666544 2 234456667777777776665555543 3566777777643
No 259
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.32 E-value=0.00058 Score=60.54 Aligned_cols=71 Identities=18% Similarity=0.289 Sum_probs=39.8
Q ss_pred HHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCcccccc
Q 002362 576 RLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQG 654 (930)
Q Consensus 576 ~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~ 654 (930)
.+-..++.+..|+|++| .+.++|..+..|+.||.|+++.|.+...|.-|..|.+|-.||..++. ..++|-+
T Consensus 71 kft~kf~t~t~lNl~~n-------eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 71 KFTIKFPTATTLNLANN-------EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHhhccchhhhhhcchh-------hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 33344455555666532 34555666666666666666666666666655556666666665554 4444443
No 260
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.31 E-value=0.014 Score=62.30 Aligned_cols=59 Identities=25% Similarity=0.379 Sum_probs=43.1
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHh----cCCeEEEEEeCCCccHHHHHHHHHHHhcC
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKR----KFDKILWVCVSETFEEFRVAKAIVEALDG 254 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 254 (930)
..-+++-|+|.+|+|||+|+..++-...... .=..++||+....|+.+.+. ++++.++.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 3568999999999999999988764322211 12478999999989888775 45666643
No 261
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.28 E-value=0.02 Score=58.98 Aligned_cols=57 Identities=25% Similarity=0.274 Sum_probs=39.8
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHhc----CCeEEEEEeCCCccHHHHHHHHHHHh
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKRK----FDKILWVCVSETFEEFRVAKAIVEAL 252 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l 252 (930)
..-.++.|+|.+|+|||+||.+++-....... -..++|++....++..++. ++++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~ 77 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERF 77 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHh
Confidence 35689999999999999999998753121121 3679999988877765443 344443
No 262
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.27 E-value=0.028 Score=55.63 Aligned_cols=88 Identities=17% Similarity=0.149 Sum_probs=49.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCC-CccHHHHHHHHHHHhcCCC---CCCccHHHHH-HHHHH
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSE-TFEEFRVAKAIVEALDGHE---SRLGEFQSLI-KHIYE 271 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~-~~l~~ 271 (930)
++|+.++|+.|+||||.+-+++.. .+.+-..+..++... .....+-++..++.++.+. ....+..+.. +.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 479999999999999988887773 333334566677543 3344555677777776432 1122232333 33333
Q ss_pred HhcCceEEEEEeCcc
Q 002362 272 SVAGMCFLLVLDDVW 286 (930)
Q Consensus 272 ~l~~kr~LlVlDdv~ 286 (930)
.-..+.=+|++|=.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 222223377777663
No 263
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.27 E-value=0.009 Score=63.35 Aligned_cols=85 Identities=22% Similarity=0.193 Sum_probs=55.4
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCC-----CCCCccHHHHHHHH
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGH-----ESRLGEFQSLIKHI 269 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l 269 (930)
+.-+++-|+|++|+||||||.+++.. ....-..++||...+.++.. .+++++.. .....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 35679999999999999999998763 34445678899987776653 23333321 11122345555555
Q ss_pred HHHhc-CceEEEEEeCcc
Q 002362 270 YESVA-GMCFLLVLDDVW 286 (930)
Q Consensus 270 ~~~l~-~kr~LlVlDdv~ 286 (930)
....+ +.--+||+|.|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 44443 445689999974
No 264
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.26 E-value=0.0042 Score=61.71 Aligned_cols=108 Identities=13% Similarity=0.097 Sum_probs=54.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh---
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESV--- 273 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--- 273 (930)
-+++.|.|.+|.||||+++.+... +... ...+.+..........+... .+. ....+..........-
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa~~L~~~----~~~---~a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAAKELREK----TGI---EAQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHHHHHHHH----HTS----EEEHHHHTTEECCEECCS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHHHHHHHh----hCc---chhhHHHHHhcCCcccccc
Confidence 467888999999999999988763 3333 34444444443333333333 211 1111111100000000
Q ss_pred ---cCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCCh
Q 002362 274 ---AGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKK 316 (930)
Q Consensus 274 ---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 316 (930)
..++-+||+|++...+...+..+...... .|+|+|+.--..
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 12334999999987665555666555544 467887765543
No 265
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.26 E-value=0.0026 Score=71.13 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=40.9
Q ss_pred ceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhc
Q 002362 171 EICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 171 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
+++|.++.+++|++.|.....+.....+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999443322244668999999999999999999987
No 266
>PRK13695 putative NTPase; Provisional
Probab=96.24 E-value=0.0068 Score=59.10 Aligned_cols=22 Identities=41% Similarity=0.462 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhch
Q 002362 199 IISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999874
No 267
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.016 Score=67.69 Aligned_cols=152 Identities=16% Similarity=0.253 Sum_probs=90.6
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHh-cC-----CeEEEEEeCCCccHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKR-KF-----DKILWVCVSETFEEFR 243 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F-----~~~~wv~vs~~~~~~~ 243 (930)
+.++||++|++++++.|.....+ --.++|.+|+|||++|.-++. ++.. .- +..++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KN------NPvLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~s---------- 231 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKN------NPVLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIYS---------- 231 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCC------CCeEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEEE----------
Confidence 45899999999999999865431 124679999999999876665 3321 11 111110
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHhc-CceEEEEEeCcccc---------CccChhhhhhhhccCCCCcEEE-EE
Q 002362 244 VAKAIVEALDGHESRLGEFQSLIKHIYESVA-GMCFLLVLDDVWDG---------NYMKWEPFFHCLKNGLHRSKIL-VT 312 (930)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ii-vT 312 (930)
-+|..-..+ ..-..+.++..+.+.+.++ .++..+++|.+..- ..+.-.-++++|..|. -++| .|
T Consensus 232 --LD~g~LvAG-akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe--L~~IGAT 306 (786)
T COG0542 232 --LDLGSLVAG-AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE--LRCIGAT 306 (786)
T ss_pred --ecHHHHhcc-ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC--eEEEEec
Confidence 111111111 2234566776666666664 45899999998641 1122233555565553 3444 45
Q ss_pred cCChHHHhhh-------CCcceEeCCCCChHHHHHHHHHH
Q 002362 313 TRKKSVASMM-------GSTNIISIKELTEEECRLLFNKI 345 (930)
Q Consensus 313 tr~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 345 (930)
|-+ +.-..+ .-.+.+.+...+.+++..+++..
T Consensus 307 T~~-EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 307 TLD-EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred cHH-HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 543 322222 22568889999999999888754
No 268
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.22 E-value=0.022 Score=62.08 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHhch
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
...++.++|++|+||||++.+++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999863
No 269
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.19 E-value=0.035 Score=54.43 Aligned_cols=121 Identities=15% Similarity=0.128 Sum_probs=65.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeC--CCccHHHHH------HHHHHHhcCCC------CCCccH
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVS--ETFEEFRVA------KAIVEALDGHE------SRLGEF 262 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs--~~~~~~~~~------~~i~~~l~~~~------~~~~~~ 262 (930)
-.+++|+|..|.|||||.+.++.. .......+++.-. ...+..... .++++.++... .....-
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 358999999999999999999873 2234444444311 111222211 11344443221 111222
Q ss_pred HHHHHHHHHHhcCceEEEEEeCcccc-CccChhhhhhhhccC-CC-CcEEEEEcCChHHHh
Q 002362 263 QSLIKHIYESVAGMCFLLVLDDVWDG-NYMKWEPFFHCLKNG-LH-RSKILVTTRKKSVAS 320 (930)
Q Consensus 263 ~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~iivTtr~~~v~~ 320 (930)
+...-.+...+-..+-++++|+.-.. +....+.+...+..- .. |.-||++|.+.....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 33344455566666779999997432 222334444444432 22 567888888766543
No 270
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.15 E-value=0.0045 Score=59.69 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=29.3
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHH-hcCCeEEEEEeCC
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVK-RKFDKILWVCVSE 237 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~ 237 (930)
+..++.+.|+.|+|||.||+.+.. .+. +.....+-+..++
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~ 42 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSE 42 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhc
Confidence 467899999999999999999987 333 3444556666554
No 271
>PRK06696 uridine kinase; Validated
Probab=96.13 E-value=0.015 Score=59.32 Aligned_cols=43 Identities=26% Similarity=0.242 Sum_probs=35.0
Q ss_pred cchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhc
Q 002362 174 GRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 174 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.|.+.+++|.+.+.... .....+|+|.|.+|+||||||+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 36677788888886533 23688999999999999999999987
No 272
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.08 E-value=0.013 Score=54.99 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=19.1
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998874
No 273
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.044 Score=61.83 Aligned_cols=159 Identities=16% Similarity=0.144 Sum_probs=82.1
Q ss_pred CceecchhhHHHHHHHhccCCCC-------CCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSD-------SPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEF 242 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 242 (930)
+++=|-++.++++...+.-+-.. +-...+-|..+|++|.|||++|+.+++ .-+..| +.++..
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp---- 502 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP---- 502 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH----
Confidence 34445665555555444322110 124678899999999999999999999 343444 333221
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCcc-------Chhhhhhhhc---cC-CCCcEE--
Q 002362 243 RVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYM-------KWEPFFHCLK---NG-LHRSKI-- 309 (930)
Q Consensus 243 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-------~~~~l~~~l~---~~-~~gs~i-- 309 (930)
++...+-+ .+...+...+.+.-+--..+|+||.++.-... .-+.+...|- +| .....|
T Consensus 503 ----EL~sk~vG-----eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~V 573 (693)
T KOG0730|consen 503 ----ELFSKYVG-----ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLV 573 (693)
T ss_pred ----HHHHHhcC-----chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEE
Confidence 11111111 11222233333333445588889988542111 1122222222 12 222223
Q ss_pred EE-EcCChHHHhh-hC---CcceEeCCCCChHHHHHHHHHHHcC
Q 002362 310 LV-TTRKKSVASM-MG---STNIISIKELTEEECRLLFNKIAFS 348 (930)
Q Consensus 310 iv-Ttr~~~v~~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~ 348 (930)
|- |.|...+-.. +. .++.+.++.-+.+...++|+.++-.
T Consensus 574 iAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 574 IAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred EeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 33 3333333222 33 3668888888888889999988743
No 274
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.07 E-value=0.027 Score=60.56 Aligned_cols=59 Identities=24% Similarity=0.277 Sum_probs=43.6
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHh----cCCeEEEEEeCCCccHHHHHHHHHHHhcC
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKR----KFDKILWVCVSETFEEFRVAKAIVEALDG 254 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 254 (930)
..-.++-|+|.+|+|||+|+..++-...... .-..++||+....|+.+++.+ +++.++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 4568899999999999999988864322211 124789999999999888654 5666544
No 275
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.07 E-value=0.063 Score=62.11 Aligned_cols=136 Identities=15% Similarity=0.170 Sum_probs=75.8
Q ss_pred CCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHH
Q 002362 169 EEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAI 248 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (930)
...++|+...++++.+.+..-.. .-.-|.|+|..|+|||++|+.+++.. ...-...+.|.+..-.+ ..+..++
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s--~r~~~p~v~v~c~~~~~-~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAAS--PRADKPLVYLNCAALPE-SLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhC--CcCCCCeEEEEcccCCh-HHHHHHh
Confidence 45699999999988888866443 34578999999999999999998731 11112344555554321 1111121
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCC-----------CCcEEEEEcCCh
Q 002362 249 VEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGL-----------HRSKILVTTRKK 316 (930)
Q Consensus 249 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~~ 316 (930)
.....+...... ......+ + ..+. =-|+||+|..-.......+...+..+. ...|||.||...
T Consensus 259 fG~~~g~~~ga~--~~~~g~~-~-~a~g-GtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 259 FGHVKGAFTGAI--SNRSGKF-E-LADG-GTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred cCccccccCCCc--ccCCcch-h-hcCC-CEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 111111000000 0000011 1 1122 246899998776666667777665432 245888888653
No 276
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.027 Score=66.98 Aligned_cols=121 Identities=14% Similarity=0.187 Sum_probs=76.9
Q ss_pred CceecchhhHHHHHHHhccCCCCCCC--CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPK--GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKA 247 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 247 (930)
..++|.++.+..|.+.+.....+... +...+.+.|+.|+|||-||+.++. -+-+..+..+-|+.|+ ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh-
Confidence 35788999999999988765533222 577889999999999999999987 3433334444444443 222
Q ss_pred HHHHhcCCC--CCCccHHHHHHHHHHHhcCceE-EEEEeCccccCccChhhhhhhhccC
Q 002362 248 IVEALDGHE--SRLGEFQSLIKHIYESVAGMCF-LLVLDDVWDGNYMKWEPFFHCLKNG 303 (930)
Q Consensus 248 i~~~l~~~~--~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~ 303 (930)
+.+.++.+. .+....+ .+.+.++.++| +|+||||...+......+...+..|
T Consensus 633 vskligsp~gyvG~e~gg----~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 633 VSKLIGSPPGYVGKEEGG----QLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhhccCCCcccccchhHH----HHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 333333322 1222233 45566776766 6779999887766666666666554
No 277
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.03 E-value=0.029 Score=59.16 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=45.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCc-cHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETF-EEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVA 274 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (930)
..+++.|+|++|+||||++..++.....+..-..+..|+..... ...+.+..-.+.++.......+..++...+.. +.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-LR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-cc
Confidence 46799999999999999999888742222111345556553311 12222222233333332222333444444433 33
Q ss_pred CceEEEEEeCc
Q 002362 275 GMCFLLVLDDV 285 (930)
Q Consensus 275 ~kr~LlVlDdv 285 (930)
+. =+|++|..
T Consensus 272 ~~-d~vliDt~ 281 (282)
T TIGR03499 272 DK-DLILIDTA 281 (282)
T ss_pred CC-CEEEEeCC
Confidence 33 37777753
No 278
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.02 E-value=0.026 Score=60.72 Aligned_cols=59 Identities=24% Similarity=0.238 Sum_probs=43.1
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHh----cCCeEEEEEeCCCccHHHHHHHHHHHhcC
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKR----KFDKILWVCVSETFEEFRVAKAIVEALDG 254 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 254 (930)
..-.++-|+|.+|+|||+||..++-...... .-..++||+....|+.+++ .+|++.++.
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 3568899999999999999988775322211 1137999999999988776 456666543
No 279
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.02 E-value=0.024 Score=60.17 Aligned_cols=85 Identities=21% Similarity=0.176 Sum_probs=55.1
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCC-----CCCccHHHHHHHH
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHE-----SRLGEFQSLIKHI 269 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 269 (930)
+.-+++-|+|++|+||||||.++... ....-..++||...+.++.. .+++++... ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999988763 33444668899887766653 234443211 1122345555555
Q ss_pred HHHhc-CceEEEEEeCcc
Q 002362 270 YESVA-GMCFLLVLDDVW 286 (930)
Q Consensus 270 ~~~l~-~kr~LlVlDdv~ 286 (930)
....+ +..-+||+|.|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 44443 455699999984
No 280
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.99 E-value=0.017 Score=55.49 Aligned_cols=80 Identities=14% Similarity=0.175 Sum_probs=45.6
Q ss_pred EEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC--c
Q 002362 199 IISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAG--M 276 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--k 276 (930)
++.|.|.+|+|||++|.++... ....++|+.-.+.++.+ +.+.|.+.-... +......+....+.+.+.. +
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRR-PAHWRTIETPRDLVSALKELDP 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhC-CCCceEeecHHHHHHHHHhcCC
Confidence 3679999999999999988652 33567788777766553 444443322211 1112222222233333321 2
Q ss_pred eEEEEEeCc
Q 002362 277 CFLLVLDDV 285 (930)
Q Consensus 277 r~LlVlDdv 285 (930)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337999997
No 281
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.97 E-value=0.013 Score=58.35 Aligned_cols=109 Identities=11% Similarity=0.076 Sum_probs=58.3
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHH---HHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAK---AIVEALDGHESRLGEFQSLIKHIYESVA 274 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~---~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (930)
.++.|+|+.|.||||+++.+... ...+....+++--. +. +-... .++.+-. ...+.......++..+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~e~-~~--E~~~~~~~~~i~q~~----vg~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTIED-PI--EFVHESKRSLINQRE----VGLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEEcC-Cc--cccccCccceeeecc----cCCCccCHHHHHHHHhc
Confidence 47899999999999999987762 33333444443222 11 10000 1111100 01112234455666676
Q ss_pred CceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChHHHh
Q 002362 275 GMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKSVAS 320 (930)
Q Consensus 275 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 320 (930)
...=.+++|++.+. +.+... +.....|..++.|+....+..
T Consensus 73 ~~pd~ii~gEird~--e~~~~~---l~~a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 73 QDPDVILVGEMRDL--ETIRLA---LTAAETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CCcCEEEEcCCCCH--HHHHHH---HHHHHcCCEEEEEecCCcHHH
Confidence 55669999999643 222222 222234556888888765544
No 282
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.96 E-value=0.044 Score=56.41 Aligned_cols=87 Identities=18% Similarity=0.130 Sum_probs=54.9
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCC------------------
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHE------------------ 256 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------------------ 256 (930)
+.-.++.|+|.+|+|||++|.++... ...+=..++|++..+. ..++.+.+ ++++-..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 45689999999999999999998653 2223457889888654 34444443 2222110
Q ss_pred --CCCccHHHHHHHHHHHhcC-ceEEEEEeCcc
Q 002362 257 --SRLGEFQSLIKHIYESVAG-MCFLLVLDDVW 286 (930)
Q Consensus 257 --~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 286 (930)
....+.+++...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666643 44589999985
No 283
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.95 E-value=0.048 Score=58.40 Aligned_cols=58 Identities=26% Similarity=0.225 Sum_probs=41.2
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHhc----CCeEEEEEeCCCccHHHHHHHHHHHhc
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKRK----FDKILWVCVSETFEEFRVAKAIVEALD 253 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~ 253 (930)
..-.++.|+|.+|+|||||+..++........ -..++|++....++..++ .++++.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 45789999999999999999988753222211 136799999888887764 44555543
No 284
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.94 E-value=0.0035 Score=37.07 Aligned_cols=21 Identities=29% Similarity=0.729 Sum_probs=13.0
Q ss_pred CCCeeeccCCccccccccccc
Q 002362 613 HLRYLNLSNQSIRKLPDTLCE 633 (930)
Q Consensus 613 ~Lr~L~L~~~~i~~lp~~i~~ 633 (930)
+|++|+|++|.|+.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666665543
No 285
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.94 E-value=0.034 Score=53.97 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=61.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCC--CccHHHHHHHHHHHhc--CCCCC----------CccH
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSE--TFEEFRVAKAIVEALD--GHESR----------LGEF 262 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~--~~~~~----------~~~~ 262 (930)
-.+++|+|..|.|||||.+.++.- .......+++.-.. ....... .+.+. .+... ....
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~---~~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL---YDPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC---CCCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 358999999999999999999873 12233444332110 0011111 11111 00000 1112
Q ss_pred HHHHHHHHHHhcCceEEEEEeCcccc-CccChhhhhhhhccCCCCcEEEEEcCChHHHhh
Q 002362 263 QSLIKHIYESVAGMCFLLVLDDVWDG-NYMKWEPFFHCLKNGLHRSKILVTTRKKSVASM 321 (930)
Q Consensus 263 ~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 321 (930)
+...-.+...+-.++=++++|+-... +......+...+..-..+..||++|.+.+....
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 22233355556666679999997542 222233444444433335668888888776653
No 286
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.94 E-value=0.041 Score=51.57 Aligned_cols=106 Identities=16% Similarity=0.154 Sum_probs=58.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGM 276 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (930)
-.+++|+|..|.|||||++.+.... ......+|+.-.. .+.-- .+....+...-.+...+..+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhcC
Confidence 3589999999999999999997732 2233444432100 00000 00122233333445556566
Q ss_pred eEEEEEeCcccc-CccChhhhhhhhccCCCCcEEEEEcCChHHHhh
Q 002362 277 CFLLVLDDVWDG-NYMKWEPFFHCLKNGLHRSKILVTTRKKSVASM 321 (930)
Q Consensus 277 r~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 321 (930)
.-++++|+.-.. +......+...+..- +..||++|...+....
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 678999987432 223334455555443 2458888887665543
No 287
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.94 E-value=0.037 Score=53.68 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=57.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEE------eCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHH
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVC------VSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIY 270 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 270 (930)
-.+++|+|..|.|||||.+.+..-. ......+++. +.+... ...-+...-.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 3589999999999999999987631 2223333321 112111 222233344455
Q ss_pred HHhcCceEEEEEeCcccc-CccChhhhhhhhccC-CC-CcEEEEEcCChHHHhh
Q 002362 271 ESVAGMCFLLVLDDVWDG-NYMKWEPFFHCLKNG-LH-RSKILVTTRKKSVASM 321 (930)
Q Consensus 271 ~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~iivTtr~~~v~~~ 321 (930)
..+..++-++++|+--.. +......+...+... .. +.-||++|.+......
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 566666779999987432 112223334444321 12 2567788887665543
No 288
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.93 E-value=0.19 Score=53.20 Aligned_cols=159 Identities=11% Similarity=0.082 Sum_probs=80.2
Q ss_pred ceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHH
Q 002362 171 EICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVE 250 (930)
Q Consensus 171 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 250 (930)
.++-..+....++..+.. .+.|.|.|.+|+||||+|+.++. +.... .+.|.++...+..++...-.-
T Consensus 46 ~y~f~~~~~~~vl~~l~~--------~~~ilL~G~pGtGKTtla~~lA~--~l~~~---~~rV~~~~~l~~~DliG~~~~ 112 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY--------DRRVMVQGYHGTGKSTHIEQIAA--RLNWP---CVRVNLDSHVSRIDLVGKDAI 112 (327)
T ss_pred CccCCHHHHHHHHHHHhc--------CCcEEEEeCCCChHHHHHHHHHH--HHCCC---eEEEEecCCCChhhcCCCcee
Confidence 455555556667777752 23599999999999999999987 33222 235566655555444332110
Q ss_pred HhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhc--------c------CCCCcEEEEEcCCh
Q 002362 251 ALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLK--------N------GLHRSKILVTTRKK 316 (930)
Q Consensus 251 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~--------~------~~~gs~iivTtr~~ 316 (930)
.+.... ....... ..+-... .+.+.+++|.+....++....+...|- . ..+.-++|.|....
T Consensus 113 ~l~~g~-~~~~f~~--GpL~~A~-~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~ 188 (327)
T TIGR01650 113 VLKDGK-QITEFRD--GILPWAL-QHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTI 188 (327)
T ss_pred eccCCc-ceeEEec--CcchhHH-hCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCC
Confidence 000000 0000000 0011111 234678888887654433333222221 1 12356677777653
Q ss_pred HHHh----h----------hCCc-ceEeCCCCChHHHHHHHHHHH
Q 002362 317 SVAS----M----------MGST-NIISIKELTEEECRLLFNKIA 346 (930)
Q Consensus 317 ~v~~----~----------~~~~-~~~~l~~L~~~~~~~lf~~~~ 346 (930)
.-.. . +.-- -.+.+.-+++++=.+++...+
T Consensus 189 g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 189 GLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred CcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 3110 0 1111 235688888888778777654
No 289
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.073 Score=54.66 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=46.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHH--HhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEV--KRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVA 274 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (930)
-|+|.++|++|.|||+|.+.++....+ .+.|....-+.++.. . +...+..+ ...-+..+.+.+.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----s----LFSKWFsE--SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----S----LFSKWFSE--SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----H----HHHHHHhh--hhhHHHHHHHHHHHHHh
Confidence 489999999999999999999986433 344444444444321 1 11111111 11234455666666665
Q ss_pred Cce--EEEEEeCcc
Q 002362 275 GMC--FLLVLDDVW 286 (930)
Q Consensus 275 ~kr--~LlVlDdv~ 286 (930)
++. +++.+|.|.
T Consensus 247 d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVE 260 (423)
T ss_pred CCCcEEEEEeHHHH
Confidence 444 456688884
No 290
>PRK09354 recA recombinase A; Provisional
Probab=95.85 E-value=0.033 Score=59.60 Aligned_cols=85 Identities=21% Similarity=0.180 Sum_probs=56.4
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCC-----CCCccHHHHHHHH
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHE-----SRLGEFQSLIKHI 269 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 269 (930)
+.-+++-|+|++|+||||||.+++.. ....-..++||.....++.. .+++++... ......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999998763 34445678999988877753 334443221 1122345555555
Q ss_pred HHHhc-CceEEEEEeCcc
Q 002362 270 YESVA-GMCFLLVLDDVW 286 (930)
Q Consensus 270 ~~~l~-~kr~LlVlDdv~ 286 (930)
...++ +..-+||+|.|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55443 455699999984
No 291
>PHA02244 ATPase-like protein
Probab=95.85 E-value=0.028 Score=60.05 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=19.2
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
-|.|+|++|+|||+||+.++.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 477899999999999999987
No 292
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.84 E-value=0.0041 Score=61.93 Aligned_cols=36 Identities=28% Similarity=0.142 Sum_probs=18.3
Q ss_pred CCcccEEeccCC--CCCccccccccccCCcceEeecCc
Q 002362 634 LYNLQKLDISCC--CKLKELPQGIGKLINMRHLLNYGT 669 (930)
Q Consensus 634 L~~L~~L~l~~~--~~~~~lp~~i~~L~~L~~L~l~~~ 669 (930)
|++|+.|.++.| .....++.-..++++|++|++++|
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 455555555555 333344444444455555555555
No 293
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.82 E-value=0.039 Score=54.03 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=60.4
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhc--CC-------------CCCCcc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALD--GH-------------ESRLGE 261 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~--~~-------------~~~~~~ 261 (930)
-.+++|+|..|.|||||++.++.-. ..-...+++.-. +.......+.+.+. .+ ......
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 3589999999999999999997631 112233332211 11111011111110 00 001111
Q ss_pred HHHHHHHHHHHhcCceEEEEEeCcccc-CccChhhhhhhhccCCCCcEEEEEcCChHHHh
Q 002362 262 FQSLIKHIYESVAGMCFLLVLDDVWDG-NYMKWEPFFHCLKNGLHRSKILVTTRKKSVAS 320 (930)
Q Consensus 262 ~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 320 (930)
.+...-.+...+-.++=++++|+.... +....+.+...+..-..+..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 223333445556666678999998542 12222334444443234667888888877664
No 294
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.79 E-value=0.034 Score=53.89 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=64.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhchH---HHHh---cCC--eEEEEEeCCCccHHHHHHHHHHHhcCCCC------C-Ccc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHE---EVKR---KFD--KILWVCVSETFEEFRVAKAIVEALDGHES------R-LGE 261 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~---~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~-~~~ 261 (930)
-.+++|+|+.|+|||||.+.+..+. .+.. .|. .+.| +.+ .+.++.++.... . ...
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~--~~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIF--IDQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEE--EhH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 4589999999999999999885320 0000 110 1222 222 345555553211 1 111
Q ss_pred HHHHHHHHHHHhcCc--eEEEEEeCcccc-CccChhhhhhhhccC-CCCcEEEEEcCChHHHhhhCCcceEeC
Q 002362 262 FQSLIKHIYESVAGM--CFLLVLDDVWDG-NYMKWEPFFHCLKNG-LHRSKILVTTRKKSVASMMGSTNIISI 330 (930)
Q Consensus 262 ~~~~~~~l~~~l~~k--r~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~~~~~~~~~l 330 (930)
-+...-.+...+-.+ .=++++|+.-.. +......+...+... ..|..||++|.+.+.... ..+++.+
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 223333444555555 568888987432 222233444444431 246678888888776542 3444444
No 295
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.76 E-value=0.041 Score=53.59 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
++.++|++|+||||++..++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999987
No 296
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.76 E-value=0.066 Score=51.65 Aligned_cols=116 Identities=10% Similarity=0.013 Sum_probs=61.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEE-------EeCCCccH--HHHHHHHHHHhcCCCCCCccHHHHHH
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWV-------CVSETFEE--FRVAKAIVEALDGHESRLGEFQSLIK 267 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-------~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~ 267 (930)
-.+++|+|..|.|||||++.+..... .....+++ .+.+.... ..+.+.+.-. .......-+...-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv 100 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRL 100 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHH
Confidence 35899999999999999999987421 11222222 12332211 1233333210 1122223334444
Q ss_pred HHHHHhcCceEEEEEeCcccc-CccChhhhhhhhccCCCCcEEEEEcCChHHHh
Q 002362 268 HIYESVAGMCFLLVLDDVWDG-NYMKWEPFFHCLKNGLHRSKILVTTRKKSVAS 320 (930)
Q Consensus 268 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 320 (930)
.+.+.+-.++=++++|+--.. +......+...+... +..||++|.+.....
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 455566566668899987432 122233344444433 355888888776543
No 297
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.73 E-value=0.029 Score=60.66 Aligned_cols=134 Identities=15% Similarity=0.117 Sum_probs=71.7
Q ss_pred ceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHH
Q 002362 171 EICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVE 250 (930)
Q Consensus 171 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 250 (930)
.++|+...+.++.+.+..... ...-|.|+|..|+||+++|+.++.. ....-...+.|.+... +...+...+..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~--s~r~~~pfv~v~c~~~-~~~~~~~~lfg 79 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYL--SSRWQGPFISLNCAAL-NENLLDSELFG 79 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh--CCccCCCeEEEeCCCC-CHHHHHHHHcc
Confidence 589999888888888765443 2346899999999999999998752 1101122334444432 22222222211
Q ss_pred HhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCC-----------CCcEEEEEcCCh
Q 002362 251 ALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGL-----------HRSKILVTTRKK 316 (930)
Q Consensus 251 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~~ 316 (930)
.-.+...... ......+ + ....=.|+||+|..-.......+...+..+. ...|||.||...
T Consensus 80 ~~~~~~~g~~--~~~~g~l-~--~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 80 HEAGAFTGAQ--KRHPGRF-E--RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred ccccccCCcc--cccCCch-h--ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 1000000000 0001111 1 1112257899998766555666766665432 135788887653
No 298
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.73 E-value=0.047 Score=57.28 Aligned_cols=80 Identities=21% Similarity=0.135 Sum_probs=43.7
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHhcC--CeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKRKF--DKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYES 272 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 272 (930)
..+.+|+|.|..|+||||+|+.+.. ...... ..+..++...-...........-.-....++..+.+.+...+...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHH
Confidence 4678999999999999999987765 232222 134444444322222222221100011224455666776666665
Q ss_pred hcCc
Q 002362 273 VAGM 276 (930)
Q Consensus 273 l~~k 276 (930)
..++
T Consensus 138 k~g~ 141 (290)
T TIGR00554 138 KSGK 141 (290)
T ss_pred HCCC
Confidence 5554
No 299
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.70 E-value=0.042 Score=54.60 Aligned_cols=79 Identities=18% Similarity=0.240 Sum_probs=44.3
Q ss_pred EEEEEecCCChHHHHHHHHhchHHHHh-cCC---eEEEEEeCCCccHHHHHHHHHHHh----cCCCCCCccHHHHHHHHH
Q 002362 199 IISIIGMGGMGKTTLAQLACNHEEVKR-KFD---KILWVCVSETFEEFRVAKAIVEAL----DGHESRLGEFQSLIKHIY 270 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~---~~~wv~vs~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~~l~ 270 (930)
||+|.|.+|+||||+|+.+.. .... ... ....++...-........ .-... ....+...+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRD-RKGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHH-HHHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhh-HhhccccccCCCCccccCHHHHHHHHH
Confidence 799999999999999999987 3332 222 133333322222222211 11111 112344567777887777
Q ss_pred HHhcCceEEE
Q 002362 271 ESVAGMCFLL 280 (930)
Q Consensus 271 ~~l~~kr~Ll 280 (930)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666666433
No 300
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.69 E-value=0.057 Score=54.80 Aligned_cols=126 Identities=17% Similarity=0.096 Sum_probs=73.7
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCC-----CccHHHHHHHHHHHhcCCC------CCC-ccHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSE-----TFEEFRVAKAIVEALDGHE------SRL-GEFQ 263 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~------~~~-~~~~ 263 (930)
+-.+++|||..|.||||+++.+.. ....-...++..-.+ .....+...++++..+... +.. ...+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 346899999999999999999986 333233444443221 1223334555555555321 122 2223
Q ss_pred HHHHHHHHHhcCceEEEEEeCccccCcc-Chhhhhhhhcc--CCCCcEEEEEcCChHHHhhhCC
Q 002362 264 SLIKHIYESVAGMCFLLVLDDVWDGNYM-KWEPFFHCLKN--GLHRSKILVTTRKKSVASMMGS 324 (930)
Q Consensus 264 ~~~~~l~~~l~~kr~LlVlDdv~~~~~~-~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~~~ 324 (930)
...-.+.+.|.-+.-++|.|..-+.-.. .-.++...+.+ ...|-..++.|.+-.+++.+..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 3344466778888889999987543111 11233333332 2346678888888888877654
No 301
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.67 E-value=0.032 Score=53.63 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=62.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCC--CccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSE--TFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVA 274 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (930)
-.+++|+|..|.|||||.+.++.. .......+++.-.. ..+..+.. .+.++-. .+....+...-.+...+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~-~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDAR---RAGIAMV-YQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHH---hcCeEEE-EecCHHHHHHHHHHHHHh
Confidence 358999999999999999999863 22344555543211 11111111 0111110 012223333444555666
Q ss_pred CceEEEEEeCcccc-CccChhhhhhhhccC-CCCcEEEEEcCChHHHh
Q 002362 275 GMCFLLVLDDVWDG-NYMKWEPFFHCLKNG-LHRSKILVTTRKKSVAS 320 (930)
Q Consensus 275 ~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 320 (930)
.++-++++|+.-.. +......+...+..- ..|.-||++|.+.....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 66678999997432 222334444444432 23567888888876443
No 302
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.13 Score=57.50 Aligned_cols=155 Identities=17% Similarity=0.265 Sum_probs=87.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAG 275 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 275 (930)
...=|.++|++|.|||-||++|+| +.+-.| ++|... +++...-+ .+.....+.+.+.-..
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP--------ELlNkYVG-----ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP--------ELLNKYVG-----ESERAVRQVFQRARAS 603 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH--------HHHHHHhh-----hHHHHHHHHHHHhhcC
Confidence 355688999999999999999999 444454 444332 11111111 1122233344444457
Q ss_pred ceEEEEEeCcccc-----CccCh------hhhhhhhcc--CCCCcEEEEEcCChHHH-hh-hCC---cceEeCCCCChHH
Q 002362 276 MCFLLVLDDVWDG-----NYMKW------EPFFHCLKN--GLHRSKILVTTRKKSVA-SM-MGS---TNIISIKELTEEE 337 (930)
Q Consensus 276 kr~LlVlDdv~~~-----~~~~~------~~l~~~l~~--~~~gs~iivTtr~~~v~-~~-~~~---~~~~~l~~L~~~~ 337 (930)
-+++|+||.++.- +...| .+++.-+.. ...|--||-.|...++- .. +.+ +....++.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 8899999999541 11122 222222222 22455566666555432 22 222 5577888889999
Q ss_pred HHHHHHHHHcCCCCc-hhhHHHHHHHHHHHHHcCCc
Q 002362 338 CRLLFNKIAFSDRPI-EEREKLEQIGRKIANKCKGL 372 (930)
Q Consensus 338 ~~~lf~~~~~~~~~~-~~~~~l~~~~~~i~~~c~gl 372 (930)
-.++++...-....+ ...-++.+|++. .+|.|.
T Consensus 684 R~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gf 717 (802)
T KOG0733|consen 684 RVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGF 717 (802)
T ss_pred HHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCC
Confidence 999999887532222 223356666553 355554
No 303
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.63 E-value=0.06 Score=60.41 Aligned_cols=89 Identities=16% Similarity=0.099 Sum_probs=46.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccH--HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEE--FRVAKAIVEALDGHESRLGEFQSLIKHIYESV 273 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 273 (930)
.-.+++|+|.+|+||||++.++......+.....+..++.. .+.. .+.+....+.++.......+..++...+. .+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD-tyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~-~l 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD-TQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE-RL 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc-cccccHHHHHHHhhcccCceeEecCcHHHHHHHHH-Hh
Confidence 45799999999999999998887632111112345555542 2221 22222222333322222233334444443 33
Q ss_pred cCceEEEEEeCccc
Q 002362 274 AGMCFLLVLDDVWD 287 (930)
Q Consensus 274 ~~kr~LlVlDdv~~ 287 (930)
.+ .=+|++|..-.
T Consensus 427 ~~-~DLVLIDTaG~ 439 (559)
T PRK12727 427 RD-YKLVLIDTAGM 439 (559)
T ss_pred cc-CCEEEecCCCc
Confidence 33 34888898743
No 304
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.62 E-value=0.088 Score=58.82 Aligned_cols=89 Identities=13% Similarity=0.151 Sum_probs=47.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCcc-HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFE-EFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAG 275 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 275 (930)
.+++.++|++|+||||++..++........-..+..|+...... ..+-+..-.+.++.+.....+.+++...+.+ +.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~~ 299 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LRD 299 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hCC
Confidence 46999999999999999988876322112234566666543211 1122222233333332222334455544543 333
Q ss_pred ceEEEEEeCccc
Q 002362 276 MCFLLVLDDVWD 287 (930)
Q Consensus 276 kr~LlVlDdv~~ 287 (930)
.=+||+|..-.
T Consensus 300 -~DlVlIDt~G~ 310 (424)
T PRK05703 300 -CDVILIDTAGR 310 (424)
T ss_pred -CCEEEEeCCCC
Confidence 35888997643
No 305
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.60 E-value=0.26 Score=52.18 Aligned_cols=130 Identities=8% Similarity=0.042 Sum_probs=79.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchH---H---HH--hcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHE---E---VK--RKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIK 267 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~---~---~~--~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 267 (930)
-..+..++|..|.||+++|..+.+.. . +. .|=+...++...+ .....++...
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g--------------------~~i~vd~Ir~ 76 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD--------------------KDLSKSEFLS 76 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC--------------------CcCCHHHHHH
Confidence 45677799999999999999887631 0 01 1111222222101 1111222222
Q ss_pred HHHHH----h-cCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcC-ChHHHhh-hCCcceEeCCCCChHHHHH
Q 002362 268 HIYES----V-AGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTR-KKSVASM-MGSTNIISIKELTEEECRL 340 (930)
Q Consensus 268 ~l~~~----l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~-~~~~~~~~l~~L~~~~~~~ 340 (930)
.+.+. . .+.+=++|+|++..........+...+-.....+.+|++|. ...+... ......+++.++++++..+
T Consensus 77 l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 77 AINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILA 156 (299)
T ss_pred HHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHH
Confidence 22211 1 14666899999977665566778888877777777776554 4444433 3447799999999999988
Q ss_pred HHHHH
Q 002362 341 LFNKI 345 (930)
Q Consensus 341 lf~~~ 345 (930)
.+...
T Consensus 157 ~l~~~ 161 (299)
T PRK07132 157 KLLSK 161 (299)
T ss_pred HHHHc
Confidence 77664
No 306
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.59 E-value=0.00077 Score=78.18 Aligned_cols=224 Identities=25% Similarity=0.350 Sum_probs=108.8
Q ss_pred CCcccEEeccCCCCCcc--ccccccccCCcceEeecCc-ccccccCCcCCCCCCCCcCCceEeCCCCCcCCCcccccccc
Q 002362 634 LYNLQKLDISCCCKLKE--LPQGIGKLINMRHLLNYGT-ISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESL 710 (930)
Q Consensus 634 L~~L~~L~l~~~~~~~~--lp~~i~~L~~L~~L~l~~~-~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L 710 (930)
+++|+.|.+.+|..+.. +-.....+++|+.|+++++ ......+... ......+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------------------~~~~~~~ 242 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL------------------------LLLLSIC 242 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHh------------------------hhhhhhc
Confidence 67788888888765554 3344567778888887763 1111111000 0011122
Q ss_pred cCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeC-CCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccC
Q 002362 711 RSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNK-EEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRG 789 (930)
Q Consensus 711 ~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 789 (930)
.+|+.|++..... +.+ .........+++|+.|.+..+. ++. ..+......+++|++|+|+++..
T Consensus 243 ~~L~~l~l~~~~~---isd--~~l~~l~~~c~~L~~L~l~~c~~lt~----------~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 243 RKLKSLDLSGCGL---VTD--IGLSALASRCPNLETLSLSNCSNLTD----------EGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCcCccchhhhhc---cCc--hhHHHHHhhCCCcceEccCCCCccch----------hHHHHHHHhcCcccEEeeecCcc
Confidence 3333344333322 111 1111112225677777755443 221 23444455566677777776654
Q ss_pred CCC--CCcccccccCccEEEeeCCCCCCCCCCCCCCCCcceeeeccCcCceEeCCccccCcccccCccccceeecccccc
Q 002362 790 KTV--FPPWMMSLTNLRSLDLDDCENCEKLPPLGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWIIMP 867 (930)
Q Consensus 790 ~~~--~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~lp 867 (930)
... +.....++++|+.|.+..+.. ++.++.+.+.++..... ...... ....+++|+.+.+..+...
T Consensus 308 ~~d~~l~~~~~~c~~l~~l~~~~~~~---------c~~l~~~~l~~~~~~~~--d~~~~~-~~~~~~~l~~~~l~~~~~~ 375 (482)
T KOG1947|consen 308 LTDSGLEALLKNCPNLRELKLLSLNG---------CPSLTDLSLSGLLTLTS--DDLAEL-ILRSCPKLTDLSLSYCGIS 375 (482)
T ss_pred chHHHHHHHHHhCcchhhhhhhhcCC---------CccHHHHHHHHhhccCc--hhHhHH-HHhcCCCcchhhhhhhhcc
Confidence 321 122222455555544443322 34444444443332210 011000 1126677777777766534
Q ss_pred ccc-eeeeccCCcc-CCCCCCCCCCCCccEEEEecCchhhHHhh
Q 002362 868 RLS-SLTFDSCPKL-KALPDHFHQTTTLKEFNIGWNCGLLEKRY 909 (930)
Q Consensus 868 ~L~-~L~l~~c~~L-~~lp~~l~~l~~L~~L~l~~nc~~l~~~~ 909 (930)
... .+.+.+|+.+ ..+........+|+.|+++. |...+.+.
T Consensus 376 ~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~-~~~~t~~~ 418 (482)
T KOG1947|consen 376 DLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSD-CRLVTDKG 418 (482)
T ss_pred CcchHHHhcCCcccchHHHHHhccCCccceEeccc-Cccccccc
Confidence 444 5777888888 44433333344489999999 77655443
No 307
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.58 E-value=0.05 Score=55.06 Aligned_cols=73 Identities=16% Similarity=0.132 Sum_probs=39.3
Q ss_pred EEEEEecCCChHHHHHHHHhchHHHHh-cC-CeEEEEEeCCCccHHHHHHHHHHHhc-CCCCCCccHHHHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACNHEEVKR-KF-DKILWVCVSETFEEFRVAKAIVEALD-GHESRLGEFQSLIKHIYESVA 274 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F-~~~~wv~vs~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~~~l~ 274 (930)
+|+|.|..|+||||+|+.+.. .... .. ..+..|+...-+.......... .+. ...+...+.+.+...+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~--~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~-~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA--LLSRWPDHPNVELITTDGFLYPNKELIERG-LMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH--HHhhcCCCCcEEEEecCcccCcHHHHHHhh-hhhcCCCcccCCHHHHHHHHHHHHC
Confidence 589999999999999999987 3322 11 2344455444332222222221 111 112345566666655555444
No 308
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.57 E-value=0.023 Score=54.74 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=42.5
Q ss_pred EEEEEecCCChHHHHHHHHhchHHHHhcCC-eEEEEEeCCCccHHHHHHHHHHHhcCCCCCC---ccHHHHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACNHEEVKRKFD-KILWVCVSETFEEFRVAKAIVEALDGHESRL---GEFQSLIKHIYESVA 274 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~l~ 274 (930)
++.|.|.+|+||||+|..+... +. .++++.-...++ .+..+.|..........- .....+...+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~------~~~~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ------SGLQVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH------cCCCcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 6899999999999999988652 22 234444433333 344455544332221111 111123333433333
Q ss_pred CceEEEEEeCc
Q 002362 275 GMCFLLVLDDV 285 (930)
Q Consensus 275 ~kr~LlVlDdv 285 (930)
+.. ++++|.+
T Consensus 76 ~~~-~VlID~L 85 (170)
T PRK05800 76 PGR-CVLVDCL 85 (170)
T ss_pred CCC-EEEehhH
Confidence 323 7889987
No 309
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.56 E-value=0.067 Score=55.43 Aligned_cols=90 Identities=23% Similarity=0.177 Sum_probs=58.6
Q ss_pred CCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHH-hcCC-CCCCccHH---HHHHH
Q 002362 194 PKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEA-LDGH-ESRLGEFQ---SLIKH 268 (930)
Q Consensus 194 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-l~~~-~~~~~~~~---~~~~~ 268 (930)
-+.-+++=|+|+.|.||||+|.+++-. .+..-..++|++.-..++++.+.. +... +..- .....+.+ +....
T Consensus 57 l~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 57 LPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred cccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHH
Confidence 456789999999999999999888763 444555899999999998887543 3333 2211 11122222 33333
Q ss_pred HHHHhcCceEEEEEeCcc
Q 002362 269 IYESVAGMCFLLVLDDVW 286 (930)
Q Consensus 269 l~~~l~~kr~LlVlDdv~ 286 (930)
+......+--|+|+|.+-
T Consensus 134 ~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 134 LARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHhccCCCCEEEEecCc
Confidence 433333345689999883
No 310
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.55 E-value=0.056 Score=63.12 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=73.6
Q ss_pred cCCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHH
Q 002362 168 DEEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKA 247 (930)
Q Consensus 168 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 247 (930)
....++|....++++.+.+..... ....|.|+|..|+|||++|+.+++... ..-...+.|.+..-. ...+..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~--r~~~pfv~i~c~~~~--~~~~~~ 265 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSP--RAKRPFVKVNCAALS--ETLLES 265 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeecCCCC--HHHHHH
Confidence 345799999999998888764432 234578999999999999999987311 111223444444321 122221
Q ss_pred HHHHhcCCCCCC--ccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCC-----------CCcEEEEEcC
Q 002362 248 IVEALDGHESRL--GEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGL-----------HRSKILVTTR 314 (930)
Q Consensus 248 i~~~l~~~~~~~--~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 314 (930)
.+.+..... .........+ .....-.|+||+|..-.......+...+..+. ...|||.||.
T Consensus 266 ---~lfg~~~~~~~~~~~~~~g~~---~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 266 ---ELFGHEKGAFTGAIAQRKGRF---ELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATN 339 (534)
T ss_pred ---HHcCCCCCccCCCCcCCCCcc---cccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCC
Confidence 111111000 0000000000 01223368899998766666666777665432 1257888776
Q ss_pred Ch
Q 002362 315 KK 316 (930)
Q Consensus 315 ~~ 316 (930)
..
T Consensus 340 ~~ 341 (534)
T TIGR01817 340 RD 341 (534)
T ss_pred CC
Confidence 43
No 311
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.55 E-value=0.065 Score=57.84 Aligned_cols=58 Identities=22% Similarity=0.313 Sum_probs=41.7
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHhc----CCeEEEEEeCCCccHHHHHHHHHHHhc
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKRK----FDKILWVCVSETFEEFRVAKAIVEALD 253 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~ 253 (930)
..-.++-|+|.+|+|||++|.+++-....... =..++||+..+.|+...+.+ +++.++
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 35689999999999999999988764222111 14799999999888877654 444443
No 312
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.54 E-value=0.049 Score=59.06 Aligned_cols=88 Identities=13% Similarity=0.162 Sum_probs=50.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcC--CeEEEEEeCC-CccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKF--DKILWVCVSE-TFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYES 272 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 272 (930)
.-.++.++|+.|+||||++.++... ....+ ..+..++... .....+-++...+.++.......+..++...+ ..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~--~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l-~~ 212 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR--CVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL-AE 212 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH-HH
Confidence 3468999999999999999999873 33333 3455555332 12333444444555554332222223333333 33
Q ss_pred hcCceEEEEEeCccc
Q 002362 273 VAGMCFLLVLDDVWD 287 (930)
Q Consensus 273 l~~kr~LlVlDdv~~ 287 (930)
+.++. ++++|..-.
T Consensus 213 l~~~D-lVLIDTaG~ 226 (374)
T PRK14722 213 LRNKH-MVLIDTIGM 226 (374)
T ss_pred hcCCC-EEEEcCCCC
Confidence 45554 566998854
No 313
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.53 E-value=0.015 Score=53.50 Aligned_cols=24 Identities=38% Similarity=0.389 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhch
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
.--|+|.|++|+||||+++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 346899999999999999999984
No 314
>PRK05439 pantothenate kinase; Provisional
Probab=95.52 E-value=0.074 Score=56.21 Aligned_cols=95 Identities=19% Similarity=0.158 Sum_probs=50.8
Q ss_pred hHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcC--CeEEEEEeCCCccHHHHHHHHHHHhc-C
Q 002362 178 EKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKF--DKILWVCVSETFEEFRVAKAIVEALD-G 254 (930)
Q Consensus 178 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~-~ 254 (930)
....+...+..... .....+|+|.|.+|+||||+|+.+.. ...... ..+.-++...-+...+.+..- ..+. .
T Consensus 69 ~~~~~~~~fl~~~~--~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~k 143 (311)
T PRK05439 69 RLQAALEQFLGKNG--QKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRK 143 (311)
T ss_pred HHHHHHHHHhcccC--CCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhh-hccccC
Confidence 33444444443222 34678999999999999999998876 333221 234444443322222222110 0111 1
Q ss_pred CCCCCccHHHHHHHHHHHhcCce
Q 002362 255 HESRLGEFQSLIKHIYESVAGMC 277 (930)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~l~~kr 277 (930)
..++.-+.+.+...+.....++.
T Consensus 144 g~Pes~D~~~l~~~L~~Lk~G~~ 166 (311)
T PRK05439 144 GFPESYDMRALLRFLSDVKSGKP 166 (311)
T ss_pred CCcccccHHHHHHHHHHHHcCCC
Confidence 22445566777766666655654
No 315
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.52 E-value=0.15 Score=58.98 Aligned_cols=153 Identities=15% Similarity=0.102 Sum_probs=78.7
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHH-HH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAK-AI 248 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~-~i 248 (930)
..++|....+.++++.+..-.. .-.-|.|+|..|+||+++|+.+... ....-..-+.|.+..-. .+.+. .+
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~--s~r~~~pfv~inca~~~--~~~~e~el 275 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLR--SPRGKKPFLALNCASIP--DDVVESEL 275 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHh--CCCCCCCeEEeccccCC--HHHHHHHh
Confidence 3689998888888777643222 2234889999999999999998652 11111223445554432 22222 11
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCC-----------CCcEEEEEcCChH
Q 002362 249 VEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGL-----------HRSKILVTTRKKS 317 (930)
Q Consensus 249 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~~~ 317 (930)
.....+....... ...-+.+. ...=.|+||+++.........+...+..+. ...|||.||...-
T Consensus 276 FG~~~~~~~~~~~---~~~g~~e~--a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l 350 (520)
T PRK10820 276 FGHAPGAYPNALE---GKKGFFEQ--ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNL 350 (520)
T ss_pred cCCCCCCcCCccc---CCCChhhh--cCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCH
Confidence 1100000000000 00000111 112357899998766555566766665431 1247888776542
Q ss_pred ---HHh-hhC-------CcceEeCCCCCh
Q 002362 318 ---VAS-MMG-------STNIISIKELTE 335 (930)
Q Consensus 318 ---v~~-~~~-------~~~~~~l~~L~~ 335 (930)
+.. .+. ....+++.||.+
T Consensus 351 ~~l~~~g~f~~dL~~rL~~~~i~lPpLre 379 (520)
T PRK10820 351 VELVQKGEFREDLYYRLNVLTLNLPPLRD 379 (520)
T ss_pred HHHHHcCCccHHHHhhcCeeEEeCCCccc
Confidence 110 010 124677888875
No 316
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.52 E-value=0.1 Score=52.06 Aligned_cols=63 Identities=11% Similarity=0.018 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHHhcCceEEEEEeCccc-cCccChhhhhhhhccC--CCCcEEEEEcCChHHHhhhC
Q 002362 261 EFQSLIKHIYESVAGMCFLLVLDDVWD-GNYMKWEPFFHCLKNG--LHRSKILVTTRKKSVASMMG 323 (930)
Q Consensus 261 ~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~~ 323 (930)
..++..-.+.+.+-..+-+|+-|+--- -+...-+.+...+... ..|.-||+.|.+..+|..+.
T Consensus 145 GGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 145 GGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 345556667778888888999997521 1122234455555542 34778999999999998643
No 317
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.52 E-value=0.026 Score=55.58 Aligned_cols=78 Identities=21% Similarity=0.283 Sum_probs=44.5
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHH--HhcCCCCCCccHHHHHHHHHHH
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVE--ALDGHESRLGEFQSLIKHIYES 272 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~~ 272 (930)
+.+.+|+|.|.+|.||||+|+.++. .+... .+.-++-. ++-...-.....+ ...-..+...+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~--~~~~I~~D-~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVE--KVVVISLD-DYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcC--cceEeecc-ccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 3578999999999999999999887 33333 11112211 1111000000110 1112234456777788888888
Q ss_pred hcCce
Q 002362 273 VAGMC 277 (930)
Q Consensus 273 l~~kr 277 (930)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88887
No 318
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.52 E-value=0.1 Score=57.16 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=52.3
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHh--cCCeEEEEEeCCCccHHH--HHHHHHHHhcCCCCCCccHHHHHHHHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKR--KFDKILWVCVSETFEEFR--VAKAIVEALDGHESRLGEFQSLIKHIYE 271 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 271 (930)
..+++.++|+.|+||||.+..++....... +-..+..|++. .+.... -++..++.++.+.....+.+++...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 457999999999999999988887422221 12345555554 333322 2444455554433333344555544444
Q ss_pred HhcCceEEEEEeCcccc
Q 002362 272 SVAGMCFLLVLDDVWDG 288 (930)
Q Consensus 272 ~l~~kr~LlVlDdv~~~ 288 (930)
. ...=+|++|..-..
T Consensus 252 ~--~~~DlVLIDTaGr~ 266 (388)
T PRK12723 252 S--KDFDLVLVDTIGKS 266 (388)
T ss_pred h--CCCCEEEEcCCCCC
Confidence 3 33458899998543
No 319
>PRK14974 cell division protein FtsY; Provisional
Probab=95.50 E-value=0.17 Score=54.45 Aligned_cols=88 Identities=18% Similarity=0.226 Sum_probs=47.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhc-CCeEEEEEeCCCccH--HHHHHHHHHHhcCCCC---CCccHHHH-HHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRK-FDKILWVCVSETFEE--FRVAKAIVEALDGHES---RLGEFQSL-IKH 268 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~---~~~~~~~~-~~~ 268 (930)
+..++.++|++|+||||++..++.. .+.. + .++.+.. +.+.. .+-++..++.++.... ...+.... ...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~--l~~~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYY--LKKNGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 4789999999999999988888863 3332 3 3444432 33322 2334455555553221 11222222 222
Q ss_pred HHHHh-cCceEEEEEeCcccc
Q 002362 269 IYESV-AGMCFLLVLDDVWDG 288 (930)
Q Consensus 269 l~~~l-~~kr~LlVlDdv~~~ 288 (930)
+.... .+.. +|++|-.-..
T Consensus 215 i~~~~~~~~D-vVLIDTaGr~ 234 (336)
T PRK14974 215 IEHAKARGID-VVLIDTAGRM 234 (336)
T ss_pred HHHHHhCCCC-EEEEECCCcc
Confidence 22222 2333 8899988543
No 320
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.50 E-value=0.052 Score=53.64 Aligned_cols=45 Identities=22% Similarity=0.144 Sum_probs=30.9
Q ss_pred EEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHH
Q 002362 199 IISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKA 247 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 247 (930)
++.|.|.+|+|||+||.++... ....=..++|++.... .+.+.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCC--HHHHHHH
Confidence 3679999999999999998774 2223356788877543 4444433
No 321
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.50 E-value=0.071 Score=51.88 Aligned_cols=119 Identities=18% Similarity=0.152 Sum_probs=61.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhc--CCC----CC--------CccH
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALD--GHE----SR--------LGEF 262 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~--~~~----~~--------~~~~ 262 (930)
-.+++|+|..|.|||||++.++... ......+++.-....+.. ..+...+. .+. .. ....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 3589999999999999999997731 223344443211000000 01111110 000 00 1112
Q ss_pred HHHHHHHHHHhcCceEEEEEeCcccc-CccChhhhhhhhccC-CCCcEEEEEcCChHHHhh
Q 002362 263 QSLIKHIYESVAGMCFLLVLDDVWDG-NYMKWEPFFHCLKNG-LHRSKILVTTRKKSVASM 321 (930)
Q Consensus 263 ~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~ 321 (930)
+...-.+...+..++=++++|+.-.. +......+...+..- ..|..||++|.+......
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 22333455666677779999997442 122223344444432 236678888888765543
No 322
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.49 E-value=0.039 Score=66.47 Aligned_cols=135 Identities=17% Similarity=0.155 Sum_probs=74.0
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
..++|+...++++.+.+..-.. ...-|.|+|..|+|||++|+.+++.. ...-...+.+.+..-. ...+...+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s--~r~~~~~v~i~c~~~~-~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLS--GRNNRRMVKMNCAAMP-AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhc--CCCCCCeEEEecccCC-hhHhhhhhc
Confidence 3689999888888776654322 33579999999999999999998732 1111234445554322 111111111
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCC-----------CCcEEEEEcCCh
Q 002362 250 EALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGL-----------HRSKILVTTRKK 316 (930)
Q Consensus 250 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~~ 316 (930)
....+..... .......+ + ....=.|+||+|..-.......+...+..+. .+.|||.||...
T Consensus 449 g~~~~~~~g~--~~~~~g~l-e--~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 GHERGAFTGA--SAQRIGRF-E--LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred Cccccccccc--ccchhhHH-H--hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 1111100000 00111112 1 1223468999998766555566776664431 245888888653
No 323
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.47 E-value=0.16 Score=48.51 Aligned_cols=116 Identities=18% Similarity=0.129 Sum_probs=65.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEe---CCCccHHHHHHHHHHHhc-----CC----CCC-Ccc--
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCV---SETFEEFRVAKAIVEALD-----GH----ESR-LGE-- 261 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~~~~~~~~~~i~~~l~-----~~----~~~-~~~-- 261 (930)
...|-|++..|.||||.|.-+.- +...+=-.++.|.. .........+... .+. .. ..+ ..+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 46788888899999999987776 33333333333322 2123333444332 111 10 001 011
Q ss_pred -HHHHHHHHHHHhcCceE-EEEEeCcccc---CccChhhhhhhhccCCCCcEEEEEcCCh
Q 002362 262 -FQSLIKHIYESVAGMCF-LLVLDDVWDG---NYMKWEPFFHCLKNGLHRSKILVTTRKK 316 (930)
Q Consensus 262 -~~~~~~~l~~~l~~kr~-LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTtr~~ 316 (930)
..+.....++.+...+| |+|||.+-.. ..-..+.+...+.....+.-||+|-|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 12233334455544444 9999998431 2234466777777777778899999975
No 324
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.47 E-value=0.076 Score=53.12 Aligned_cols=63 Identities=21% Similarity=0.211 Sum_probs=39.6
Q ss_pred CCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEE-------EeCCCccHHHH--HHHHHHHhcCCC
Q 002362 194 PKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWV-------CVSETFEEFRV--AKAIVEALDGHE 256 (930)
Q Consensus 194 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-------~vs~~~~~~~~--~~~i~~~l~~~~ 256 (930)
.+.+.+|.++||+|.||||..|.++.+..-++.-..++=. ...-+.++++. .++..++.+...
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 4567788999999999999999998753322221222211 12334566654 567778776543
No 325
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.46 E-value=0.12 Score=54.50 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=37.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHh
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEAL 252 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 252 (930)
.-.++.|.|.+|+||||++.+++... ...+=..++|++... +..++...+...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 34588899999999999999887632 122235688888765 3455665555543
No 326
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.46 E-value=0.099 Score=53.35 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=32.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAI 248 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (930)
.-.++.|.|..|+||||+|.+++.. ..+.. ..++|++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 3459999999999999998666553 22222 4567776433 455666665
No 327
>PRK07667 uridine kinase; Provisional
Probab=95.46 E-value=0.032 Score=55.32 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=29.1
Q ss_pred HHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhc
Q 002362 179 KNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 179 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+.|.+.+.... +...+|+|-|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 456666665433 2458999999999999999999987
No 328
>PRK08233 hypothetical protein; Provisional
Probab=95.45 E-value=0.033 Score=54.76 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=21.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47999999999999999998876
No 329
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.43 E-value=0.034 Score=55.99 Aligned_cols=121 Identities=13% Similarity=0.123 Sum_probs=60.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCC---CccHHHHHHHHHHH-
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESR---LGEFQSLIKHIYES- 272 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~- 272 (930)
.+++.|+|+.|.||||+.+.+...... .+-...+|. .. .. ...+.++...+.....- ......-.+++...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a--~~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPA--DS-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEc--CC-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 488999999999999999998753222 222222222 11 00 01122222222221111 11111111222222
Q ss_pred -hcCceEEEEEeCccccCc-cChh----hhhhhhccC-CCCcEEEEEcCChHHHhhh
Q 002362 273 -VAGMCFLLVLDDVWDGNY-MKWE----PFFHCLKNG-LHRSKILVTTRKKSVASMM 322 (930)
Q Consensus 273 -l~~kr~LlVlDdv~~~~~-~~~~----~l~~~l~~~-~~gs~iivTtr~~~v~~~~ 322 (930)
+..++-|++||..-.... .+.. .+...+... ..+..+|+||...+.+...
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 236778999999865321 1111 122233222 2346799999998877654
No 330
>PRK10867 signal recognition particle protein; Provisional
Probab=95.42 E-value=0.063 Score=59.66 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+.+|.++|.+|+||||.|.+++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998888776
No 331
>PTZ00301 uridine kinase; Provisional
Probab=95.42 E-value=0.021 Score=57.07 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=23.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcC
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKF 227 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 227 (930)
..+|+|.|.+|+||||||+.+.. ++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~--~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS--ELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH--HHHhhc
Confidence 57999999999999999999877 444444
No 332
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.40 E-value=0.11 Score=53.54 Aligned_cols=142 Identities=15% Similarity=0.237 Sum_probs=71.9
Q ss_pred EEEEEecCCChHHHHHHHHhchHHHHh------cC----CeEEEEEeCCCcc-HHHHHHHHHHHhcCCCC----------
Q 002362 199 IISIIGMGGMGKTTLAQLACNHEEVKR------KF----DKILWVCVSETFE-EFRVAKAIVEALDGHES---------- 257 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~------~F----~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~---------- 257 (930)
+..|+|++|+|||+||..++-...... .. ..+++++...+.+ +..-+..+...++....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 568999999999999998876311111 11 1355555554432 33344445443321000
Q ss_pred -C-----C---ccHHHHHHHHHHHh-cCceEEEEEeCccc------cCccChhhhhhhhcc--CCCCcEEEEEcCChHHH
Q 002362 258 -R-----L---GEFQSLIKHIYESV-AGMCFLLVLDDVWD------GNYMKWEPFFHCLKN--GLHRSKILVTTRKKSVA 319 (930)
Q Consensus 258 -~-----~---~~~~~~~~~l~~~l-~~kr~LlVlDdv~~------~~~~~~~~l~~~l~~--~~~gs~iivTtr~~~v~ 319 (930)
. . .........+.+.+ ..+.-+||+|-+-. .+......+...+.. ...|.-||+++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 0 0 01122233333333 34556999996632 122233344444432 13466788777754221
Q ss_pred h--------h------hC-CcceEeCCCCChHHHHH
Q 002362 320 S--------M------MG-STNIISIKELTEEECRL 340 (930)
Q Consensus 320 ~--------~------~~-~~~~~~l~~L~~~~~~~ 340 (930)
. . .+ +...+.+.+++++|+.+
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEK 198 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHh
Confidence 1 0 11 12367788888888766
No 333
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.39 E-value=0.055 Score=58.19 Aligned_cols=89 Identities=19% Similarity=0.217 Sum_probs=48.7
Q ss_pred CeEEEEEEecCCChHH-HHHHHHhchHHHHhcCCeEEEEEeCC-CccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh
Q 002362 196 GLHIISIIGMGGMGKT-TLAQLACNHEEVKRKFDKILWVCVSE-TFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESV 273 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKT-tLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 273 (930)
+-++|.+||+.|+||| |||+..+.-.. ...=..+..|+... .....+-++.-++-++.+-....+..++...+.. +
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~-~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~-l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVM-LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA-L 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHh-hccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH-h
Confidence 4789999999999998 56666655321 12224566666543 1222333344444444444344455555554433 3
Q ss_pred cCceEEEEEeCccc
Q 002362 274 AGMCFLLVLDDVWD 287 (930)
Q Consensus 274 ~~kr~LlVlDdv~~ 287 (930)
++.+ +|.+|-+-.
T Consensus 280 ~~~d-~ILVDTaGr 292 (407)
T COG1419 280 RDCD-VILVDTAGR 292 (407)
T ss_pred hcCC-EEEEeCCCC
Confidence 4443 566676643
No 334
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.39 E-value=0.018 Score=60.84 Aligned_cols=51 Identities=24% Similarity=0.346 Sum_probs=45.9
Q ss_pred CCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhc
Q 002362 169 EEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...|+|.++.++++++.+...+.+.+..-+|+.++|+.|.||||||..+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999887776677889999999999999999998866
No 335
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.38 E-value=0.1 Score=58.23 Aligned_cols=88 Identities=19% Similarity=0.143 Sum_probs=48.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCC-ccHHHHHHHHHHHhcCCCC---CCccHHHHHHHHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSET-FEEFRVAKAIVEALDGHES---RLGEFQSLIKHIYE 271 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 271 (930)
.+.+|.++|.+|+||||+|..++.. .+..-..+..|++... ....+.+..++++++.+.. ...+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 5689999999999999999999873 3333224444544321 1223445555665543221 11222232323333
Q ss_pred HhcCceEEEEEeCcc
Q 002362 272 SVAGMCFLLVLDDVW 286 (930)
Q Consensus 272 ~l~~kr~LlVlDdv~ 286 (930)
.+.+. =+||+|..-
T Consensus 172 ~~~~~-DvVIIDTAG 185 (437)
T PRK00771 172 KFKKA-DVIIVDTAG 185 (437)
T ss_pred HhhcC-CEEEEECCC
Confidence 33333 467777763
No 336
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.13 Score=59.41 Aligned_cols=133 Identities=14% Similarity=0.106 Sum_probs=76.1
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHH-HHHHHHHHh
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQS-LIKHIYESV 273 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l 273 (930)
...+.+.++|++|.|||.||+.+++ ....+|- .+... ++.... ..+.+. ....+....
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi-----~v~~~--------~l~sk~------vGesek~ir~~F~~A~ 332 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFI-----SVKGS--------ELLSKW------VGESEKNIRELFEKAR 332 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEE-----EeeCH--------HHhccc------cchHHHHHHHHHHHHH
Confidence 4566899999999999999999998 3333442 22211 111111 111222 333333444
Q ss_pred cCceEEEEEeCccccC-----c------cChhhhhhhhccCC--CCcEEEEEcCChHHHhh-h----CCcceEeCCCCCh
Q 002362 274 AGMCFLLVLDDVWDGN-----Y------MKWEPFFHCLKNGL--HRSKILVTTRKKSVASM-M----GSTNIISIKELTE 335 (930)
Q Consensus 274 ~~kr~LlVlDdv~~~~-----~------~~~~~l~~~l~~~~--~gs~iivTtr~~~v~~~-~----~~~~~~~l~~L~~ 335 (930)
+.....|++|+++.-- . .....+...+.... .+..||-||........ + .-...+.+.+-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 6788999999995411 0 11122333332222 33335555554433221 1 2256889999999
Q ss_pred HHHHHHHHHHHcC
Q 002362 336 EECRLLFNKIAFS 348 (930)
Q Consensus 336 ~~~~~lf~~~~~~ 348 (930)
++..+.|+.+.-.
T Consensus 413 ~~r~~i~~~~~~~ 425 (494)
T COG0464 413 EERLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998753
No 337
>PTZ00035 Rad51 protein; Provisional
Probab=95.35 E-value=0.076 Score=57.38 Aligned_cols=58 Identities=24% Similarity=0.309 Sum_probs=40.6
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHH----hcCCeEEEEEeCCCccHHHHHHHHHHHhc
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVK----RKFDKILWVCVSETFEEFRVAKAIVEALD 253 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 253 (930)
..-.++.|+|.+|+|||||+..++-..+.. ..=..++|++....|+.+++ .++++.++
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 456899999999999999999887532211 11235779998887877764 44455544
No 338
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.34 E-value=0.11 Score=49.48 Aligned_cols=124 Identities=19% Similarity=0.237 Sum_probs=71.7
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEE---------------------eCCCc---------------
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVC---------------------VSETF--------------- 239 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---------------------vs~~~--------------- 239 (930)
+-..+.++|+.|.||||+.+.+|..++.. ...+|+. |-|++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 34689999999999999999999854321 2334442 11111
Q ss_pred ------cHHHHHHHHHHHh---cCC------CCCCccHHHHHHHHHHHhcCceEEEEEeCcc-ccC-ccChhhhhhhhcc
Q 002362 240 ------EEFRVAKAIVEAL---DGH------ESRLGEFQSLIKHIYESVAGMCFLLVLDDVW-DGN-YMKWEPFFHCLKN 302 (930)
Q Consensus 240 ------~~~~~~~~i~~~l---~~~------~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~-~~~-~~~~~~l~~~l~~ 302 (930)
...++-+...+.+ +.. ..+....++..-.+.+.+-+++-+++=|.-- +-+ .-.|+-+ ..|..
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im-~lfee 182 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM-RLFEE 182 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHH-HHHHH
Confidence 1122222222222 211 1222334555566777777888888888641 111 1244433 33333
Q ss_pred -CCCCcEEEEEcCChHHHhhhC
Q 002362 303 -GLHRSKILVTTRKKSVASMMG 323 (930)
Q Consensus 303 -~~~gs~iivTtr~~~v~~~~~ 323 (930)
+..|.-||++|.+.+.-+.+.
T Consensus 183 inr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 183 INRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HhhcCcEEEEEeccHHHHHhcc
Confidence 557899999999998776653
No 339
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.34 E-value=0.072 Score=54.52 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=23.1
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhc
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
....+++|.|..|.|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999987
No 340
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.33 E-value=0.027 Score=52.80 Aligned_cols=36 Identities=28% Similarity=0.282 Sum_probs=27.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEE
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVC 234 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 234 (930)
..||.|.|.+|+||||||+.+.. +....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 46899999999999999999988 5555555566655
No 341
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.31 E-value=0.093 Score=56.42 Aligned_cols=91 Identities=16% Similarity=0.099 Sum_probs=53.3
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCc-cHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETF-EEFRVAKAIVEALDGHESRLGEFQSLIKHIYESV 273 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 273 (930)
.+.+++.|+|+.|+||||++..++.. ....-..+.+|++.... ...+-++..++.++.+.....+..++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 35689999999999999999998863 32222356666664322 2233444455544433222345555555454332
Q ss_pred c-CceEEEEEeCccc
Q 002362 274 A-GMCFLLVLDDVWD 287 (930)
Q Consensus 274 ~-~kr~LlVlDdv~~ 287 (930)
. +..=+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 3345788888744
No 342
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.31 E-value=0.065 Score=52.11 Aligned_cols=118 Identities=16% Similarity=0.139 Sum_probs=59.5
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCC--CccHHHHHHHHHHHhcCCCCC----------CccHHHH
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSE--TFEEFRVAKAIVEALDGHESR----------LGEFQSL 265 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~----------~~~~~~~ 265 (930)
.+++|+|..|.|||||.+.++.. .......+++.-.. ..........+.-. .+... ....+..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~---~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~--~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGL---LRPTSGRVRLDGADISQWDPNELGDHVGYL--PQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc---cCCCCCeEEECCEEcccCCHHHHHhheEEE--CCCCccccCcHHHHCcCHHHHH
Confidence 58999999999999999999863 22233333332111 01111111111000 00000 1112223
Q ss_pred HHHHHHHhcCceEEEEEeCcccc-CccChhhhhhhhccC-CCCcEEEEEcCChHHHh
Q 002362 266 IKHIYESVAGMCFLLVLDDVWDG-NYMKWEPFFHCLKNG-LHRSKILVTTRKKSVAS 320 (930)
Q Consensus 266 ~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 320 (930)
.-.+...+-.++=++++|+.... +......+...+..- ..|..||++|.+.....
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 33444555556668899998542 122223344444331 23667888888876654
No 343
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.31 E-value=0.16 Score=49.49 Aligned_cols=125 Identities=17% Similarity=0.122 Sum_probs=70.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeC-------------------CCc-----------------
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVS-------------------ETF----------------- 239 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-------------------~~~----------------- 239 (930)
.-.|+.|+|+.|.|||||.+-+..- ...=+..+||.-. +.|
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~L---E~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGL---EEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC---cCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 3469999999999999999988652 2222345555321 111
Q ss_pred --------cHHHHHHHHHHHhcCC-----CC-CCccHHHHHHHHHHHhcCceEEEEEeCcccc-CccChhhhhhhhcc-C
Q 002362 240 --------EEFRVAKAIVEALDGH-----ES-RLGEFQSLIKHIYESVAGMCFLLVLDDVWDG-NYMKWEPFFHCLKN-G 303 (930)
Q Consensus 240 --------~~~~~~~~i~~~l~~~-----~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~ 303 (930)
..++...++++.++.. .+ .....++..-.|.+.|.-++=++.||..-+. +++-...+...+.. .
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA 183 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH
Confidence 1112222333333321 11 1233445556677888777778999998553 22222333333332 2
Q ss_pred CCCcEEEEEcCChHHHhhhC
Q 002362 304 LHRSKILVTTRKKSVASMMG 323 (930)
Q Consensus 304 ~~gs~iivTtr~~~v~~~~~ 323 (930)
..|--+|+.|.....|+.+.
T Consensus 184 ~eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 184 EEGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred HcCCeEEEEechhHHHHHhh
Confidence 35666788888877776543
No 344
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.2 Score=58.57 Aligned_cols=181 Identities=15% Similarity=0.147 Sum_probs=102.1
Q ss_pred Cceecchh---hHHHHHHHhccCCC---CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHH
Q 002362 170 EEICGRVD---EKNELLSKLLCESS---DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFR 243 (930)
Q Consensus 170 ~~~vGr~~---~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 243 (930)
.++.|-++ |+.+++++|..+.. -+..-++=+.++|++|.|||-||++++-.. .+-|+++|..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-------gVPF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-------CCceeeechH-----
Confidence 35677765 55566666654421 013456789999999999999999998842 2445666542
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHH-hcCceEEEEEeCccccCccC-----------h-hhhhhhhcc---CC--C
Q 002362 244 VAKAIVEALDGHESRLGEFQSLIKHIYES-VAGMCFLLVLDDVWDGNYMK-----------W-EPFFHCLKN---GL--H 305 (930)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~-----------~-~~l~~~l~~---~~--~ 305 (930)
+.++.+.+.. ...++.+... -...+.+|.+|+++...... - ..+...+.. .. .
T Consensus 379 ---EFvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ---EFVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ---HHHHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 1222221111 1222233322 24567888888885421111 1 123333332 11 2
Q ss_pred CcEEEEEcCChHHHhh--hC---CcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhH
Q 002362 306 RSKILVTTRKKSVASM--MG---STNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLA 375 (930)
Q Consensus 306 gs~iivTtr~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLa 375 (930)
+--++-+|+..++... +. -++.+.++.-+.....++|+-++-..... .+..++++ |+...-|.+=|
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHH
Confidence 2233445555444322 22 26788999999999999999988544332 34445556 88888887744
No 345
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.30 E-value=0.12 Score=57.58 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHhch
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
++.++.++|.+|+||||.|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999888763
No 346
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.0012 Score=65.57 Aligned_cols=82 Identities=23% Similarity=0.257 Sum_probs=49.1
Q ss_pred cccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccc--cccccCCcceEeecCcccccccCC-----cCC
Q 002362 608 IERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQ--GIGKLINMRHLLNYGTISLRYMPV-----GIG 680 (930)
Q Consensus 608 i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~-----~i~ 680 (930)
+.+|+.|+.|.|+-|+|+.|- .+..+++|+.|.|+.|. +..+-+ .+.++++||.|.|..|+-...-+. .+.
T Consensus 37 c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 345666666666666666653 35566777777777666 444332 245677777777776654333332 245
Q ss_pred CCCCCCcCCce
Q 002362 681 RLTSLRTLDEF 691 (930)
Q Consensus 681 ~l~~L~~L~~~ 691 (930)
-|++|++|+-.
T Consensus 115 ~LPnLkKLDnv 125 (388)
T KOG2123|consen 115 VLPNLKKLDNV 125 (388)
T ss_pred HcccchhccCc
Confidence 56777777643
No 347
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.28 E-value=0.093 Score=62.28 Aligned_cols=130 Identities=14% Similarity=0.126 Sum_probs=70.3
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCce
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMC 277 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (930)
+-|.|+|++|.|||++|+.+.+. ....| +.++.++ +. ..+.+ .....+...+.......+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------~~----~~~~g-----~~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------FV----EMFVG-----VGASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------hH----Hhhhc-----ccHHHHHHHHHHHHhcCC
Confidence 44999999999999999999773 22222 2222221 11 11111 011222223333334567
Q ss_pred EEEEEeCccccC----------ccChhhhhhh-h---cc--CCCCcEEEEEcCChHHHhh--hC---CcceEeCCCCChH
Q 002362 278 FLLVLDDVWDGN----------YMKWEPFFHC-L---KN--GLHRSKILVTTRKKSVASM--MG---STNIISIKELTEE 336 (930)
Q Consensus 278 ~LlVlDdv~~~~----------~~~~~~l~~~-l---~~--~~~gs~iivTtr~~~v~~~--~~---~~~~~~l~~L~~~ 336 (930)
.+|++|+++.-. ...+...... | .. ...+.-||.||...+.... .. -.+.+.+...+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 899999996521 0112222222 2 11 1234456667776653321 11 2567889988988
Q ss_pred HHHHHHHHHHc
Q 002362 337 ECRLLFNKIAF 347 (930)
Q Consensus 337 ~~~~lf~~~~~ 347 (930)
+..++++.+..
T Consensus 326 ~R~~Il~~~~~ 336 (644)
T PRK10733 326 GREQILKVHMR 336 (644)
T ss_pred HHHHHHHHHhh
Confidence 88888887764
No 348
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.26 E-value=0.056 Score=58.37 Aligned_cols=44 Identities=23% Similarity=0.202 Sum_probs=33.3
Q ss_pred eecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhc
Q 002362 172 ICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 172 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
++|+...++++.+.+..-.. .-.-|.|+|..|+||+++|+.+++
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~ 44 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHY 44 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHH
Confidence 46777777777776654432 334589999999999999999976
No 349
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.32 Score=49.39 Aligned_cols=97 Identities=21% Similarity=0.321 Sum_probs=61.6
Q ss_pred CceecchhhHHHHHHHhccCC------CCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHH
Q 002362 170 EEICGRVDEKNELLSKLLCES------SDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFR 243 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 243 (930)
+++-|-+..++.+.+...-+- .+....-+-|.++|++|.||+-||+.|+.... .-|.+||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-------STFFSvSSS----- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-------STFFSVSSS----- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-------CceEEeehH-----
Confidence 356788888888877654332 11133568899999999999999999987321 223445432
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHh-cCceEEEEEeCccc
Q 002362 244 VAKAIVEALDGHESRLGEFQSLIKHIYESV-AGMCFLLVLDDVWD 287 (930)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~ 287 (930)
++...+.+ +-+.+...+.+.- ..|+-+|++|.++.
T Consensus 201 ---DLvSKWmG------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 201 ---DLVSKWMG------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred ---HHHHHHhc------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 22232222 2344555555544 47889999999964
No 350
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.21 E-value=0.064 Score=57.02 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=24.3
Q ss_pred CCCeEEEEEEecCCChHHHHHHHHhch
Q 002362 194 PKGLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 194 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
-..++.++|+|++|.|||.+|+.+++.
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999984
No 351
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.17 E-value=0.088 Score=56.75 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=41.5
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHh----cCCeEEEEEeCCCccHHHHHHHHHHHhc
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKR----KFDKILWVCVSETFEEFRVAKAIVEALD 253 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 253 (930)
..-.++-|+|.+|+||||++.+++....... .=..++||+....|+.+.+. ++++.++
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 3568999999999999999998876422210 11379999999888877654 4455443
No 352
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.14 E-value=0.17 Score=55.58 Aligned_cols=22 Identities=45% Similarity=0.690 Sum_probs=19.9
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+++|+|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4799999999999999998854
No 353
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.13 E-value=0.01 Score=59.17 Aligned_cols=60 Identities=25% Similarity=0.287 Sum_probs=30.2
Q ss_pred CCCcceEEEeec--cCCCCCCcccccccCccEEEeeCCCCC--CCCCCCCCCCCcceeeeccCc
Q 002362 776 PPNLRKLLIGSY--RGKTVFPPWMMSLTNLRSLDLDDCENC--EKLPPLGKLPSLEKLSISFMC 835 (930)
Q Consensus 776 ~~~L~~L~l~~~--~~~~~~p~~~~~l~~L~~L~L~~~~~~--~~l~~l~~l~~L~~L~L~~~~ 835 (930)
+|+|++|.++.| ++...++.-...+++|++|+|++|++. .+++++..+++|..|++.+|.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 445555555555 333333333334455666666555432 344555555555566555544
No 354
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.10 E-value=0.14 Score=52.66 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=36.1
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHH
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAI 248 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (930)
..-.++.|.|.+|+|||++|.++... -...-..++||+..+ +...+.+.+
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEeeC--CHHHHHHHH
Confidence 35689999999999999999887652 223456788988765 444555543
No 355
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.08 E-value=0.071 Score=52.00 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHhch
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
...+|.|+|++|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999873
No 356
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.07 E-value=0.093 Score=54.70 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=31.3
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCC
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSE 237 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 237 (930)
..-+++.|.|.+|+||||+|.+++.. -...=..++|++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecC
Confidence 35679999999999999999988653 222335788888864
No 357
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.05 E-value=0.058 Score=57.09 Aligned_cols=84 Identities=21% Similarity=0.167 Sum_probs=50.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHES-----RLGEFQSLIKHIY 270 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 270 (930)
.-+++-|+|..|+||||||..+.. .....-..++||.....++.... +.++.+.. .....++......
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~a-----~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEYA-----ESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHHH-----HHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhHH-----HhcCccccceEEecCCcHHHHHHHHH
Confidence 457999999999999999999887 44455567999999887766432 33332211 1122344445555
Q ss_pred HHhc-CceEEEEEeCcc
Q 002362 271 ESVA-GMCFLLVLDDVW 286 (930)
Q Consensus 271 ~~l~-~kr~LlVlDdv~ 286 (930)
..++ +..-++|+|-|-
T Consensus 125 ~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHTTSESEEEEE-CT
T ss_pred HHhhcccccEEEEecCc
Confidence 5554 444588999883
No 358
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.03 E-value=0.016 Score=53.15 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=19.1
Q ss_pred EEEEecCCChHHHHHHHHhch
Q 002362 200 ISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 200 i~I~G~gGiGKTtLa~~v~~~ 220 (930)
|+|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999873
No 359
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.01 E-value=0.084 Score=54.96 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=18.1
Q ss_pred EEEEEEecCCChHHHHHHHHhch
Q 002362 198 HIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
..|.|.|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46899999999999999999874
No 360
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.98 E-value=0.077 Score=50.07 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
||.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999877
No 361
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.98 E-value=0.094 Score=59.87 Aligned_cols=59 Identities=24% Similarity=0.276 Sum_probs=42.8
Q ss_pred ceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEE
Q 002362 171 EICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVC 234 (930)
Q Consensus 171 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 234 (930)
++.--.+-++++..||.....+ ....+++.+.|++|+||||.++.++++ -.|+.+-|..
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~-~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSG-SSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhcc-CCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 4444566778888888654322 234679999999999999999999873 2467777864
No 362
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.95 E-value=0.06 Score=51.43 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=62.5
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCc--cHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETF--EEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAG 275 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 275 (930)
.+++|+|..|.|||||++.+.... ......+++...... ..... ...+.-.. +....+...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~-qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEEL----RRRIGYVP-QLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHH----HhceEEEe-eCCHHHHHHHHHHHHHhc
Confidence 689999999999999999998732 234455554332111 11111 11111000 012223333345555555
Q ss_pred ceEEEEEeCcccc-CccChhhhhhhhccC-CCCcEEEEEcCChHHHhhh
Q 002362 276 MCFLLVLDDVWDG-NYMKWEPFFHCLKNG-LHRSKILVTTRKKSVASMM 322 (930)
Q Consensus 276 kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~~ 322 (930)
..-++++|+.-.. +......+...+... ..+.-|+++|.+.......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 6679999998532 122233344444321 1246688888887766543
No 363
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.95 E-value=0.077 Score=53.07 Aligned_cols=84 Identities=24% Similarity=0.241 Sum_probs=51.2
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCC-ccHHHHHHHHHHHhcCC-------CCCCccHH-----H
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSET-FEEFRVAKAIVEALDGH-------ESRLGEFQ-----S 264 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~-----~ 264 (930)
..++|+|.+|+|||+|++.+.+.. .-+.++++.+.+. ..+.++.+++...-..+ ..+..... .
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 568999999999999999998742 2345588888765 34555555554331100 11111111 1
Q ss_pred HHHHHHHHh--cCceEEEEEeCc
Q 002362 265 LIKHIYESV--AGMCFLLVLDDV 285 (930)
Q Consensus 265 ~~~~l~~~l--~~kr~LlVlDdv 285 (930)
..-.+.+++ +++.+|+++||+
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETH
T ss_pred cchhhhHHHhhcCCceeehhhhh
Confidence 112223333 699999999999
No 364
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.94 E-value=0.088 Score=52.50 Aligned_cols=119 Identities=17% Similarity=0.235 Sum_probs=62.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCc-------cHHHHHHHH
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLG-------EFQSLIKHI 269 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-------~~~~~~~~l 269 (930)
.+++.|.|+.|.||||+.+.+.-.. +..+.. ++|.+.. ..-.+...|...++....... +..++. .+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~~G--~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~-~i 102 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQIG--CFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETA-YI 102 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHHcC--CCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHH-HH
Confidence 4789999999999999999887642 222221 2222211 111233334333333211111 111221 11
Q ss_pred HHHhcCceEEEEEeCccccC-ccCh----hhhhhhhccCCCCcEEEEEcCChHHHhhhCC
Q 002362 270 YESVAGMCFLLVLDDVWDGN-YMKW----EPFFHCLKNGLHRSKILVTTRKKSVASMMGS 324 (930)
Q Consensus 270 ~~~l~~kr~LlVlDdv~~~~-~~~~----~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~ 324 (930)
.. +..++-|+++|..-... ..+. ..+...+.. .|+.+|+||...+++..+..
T Consensus 103 l~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 103 LD-YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HH-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 12 23567799999984421 1111 122333333 37889999999988876553
No 365
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.90 E-value=0.15 Score=50.13 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhch
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
-.+++|+|..|.|||||.+.+..-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 366
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.89 E-value=0.17 Score=52.94 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=28.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeC
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVS 236 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 236 (930)
+.+++.++|++|+||||++.+++.. ....-..+.++...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCC
Confidence 5689999999999999999888863 33332355566544
No 367
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.81 E-value=0.12 Score=56.64 Aligned_cols=41 Identities=29% Similarity=0.370 Sum_probs=31.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCC
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSET 238 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 238 (930)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs 121 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES 121 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC
Confidence 4579999999999999999999873 3333456888876543
No 368
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.80 E-value=0.055 Score=52.94 Aligned_cols=121 Identities=14% Similarity=0.067 Sum_probs=59.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhc--CCCC----C----------Cc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALD--GHES----R----------LG 260 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~--~~~~----~----------~~ 260 (930)
-.+++|+|..|.|||||++.++.. .......+.+.-........-.....+.+. .+.. . ..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~---~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS 102 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL---EEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLS 102 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCC
Confidence 358999999999999999999762 122334444321100000000001111111 0000 0 11
Q ss_pred cHHHHHHHHHHHhcCceEEEEEeCcccc-CccChhhhhhhhccC-C-CCcEEEEEcCChHHHh
Q 002362 261 EFQSLIKHIYESVAGMCFLLVLDDVWDG-NYMKWEPFFHCLKNG-L-HRSKILVTTRKKSVAS 320 (930)
Q Consensus 261 ~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~-~gs~iivTtr~~~v~~ 320 (930)
.-+...-.+...+..++=++++|+--.. +......+...+..- . .|..||++|.+.....
T Consensus 103 ~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 1122333345556566678999987432 222233444444432 1 2566888888766554
No 369
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.80 E-value=0.058 Score=58.70 Aligned_cols=50 Identities=24% Similarity=0.281 Sum_probs=36.6
Q ss_pred CceecchhhHHHHHHHhccC-------CC-CCCCCeEEEEEEecCCChHHHHHHHHhc
Q 002362 170 EEICGRVDEKNELLSKLLCE-------SS-DSPKGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~-------~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..++|.++.++.+.-.+... .. ...-..+-|.++|++|+|||++|+.+..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~ 69 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK 69 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 35889988888887666532 00 0011346789999999999999999987
No 370
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.79 E-value=0.022 Score=57.40 Aligned_cols=25 Identities=44% Similarity=0.473 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhc
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+..+|+|.|.+|+||||||+.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999887
No 371
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.79 E-value=0.023 Score=57.15 Aligned_cols=25 Identities=40% Similarity=0.352 Sum_probs=22.5
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhc
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
+...+|+|+|++|+||||||+.+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999976
No 372
>PRK06547 hypothetical protein; Provisional
Probab=94.78 E-value=0.035 Score=53.57 Aligned_cols=25 Identities=40% Similarity=0.470 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhc
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
....+|+|.|+.|+||||+|+.+..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999976
No 373
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.76 E-value=0.02 Score=45.80 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=19.1
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
+++|.|..|+||||+|+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998876
No 374
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.73 E-value=0.22 Score=48.27 Aligned_cols=119 Identities=17% Similarity=0.073 Sum_probs=67.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCC---CccHHHHHHHHH--HHh--cCC-----CCCCcc--
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSE---TFEEFRVAKAIV--EAL--DGH-----ESRLGE-- 261 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~--~~l--~~~-----~~~~~~-- 261 (930)
....|-|+|..|-||||.|.-+.- +...+=-.+..|..-. .......+..+- ... +.. .....+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 346899999999999999987766 4444333444444322 223333333310 000 110 000111
Q ss_pred -HHHHHHHHHHHhcCce-EEEEEeCcccc---CccChhhhhhhhccCCCCcEEEEEcCCh
Q 002362 262 -FQSLIKHIYESVAGMC-FLLVLDDVWDG---NYMKWEPFFHCLKNGLHRSKILVTTRKK 316 (930)
Q Consensus 262 -~~~~~~~l~~~l~~kr-~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTtr~~ 316 (930)
..+.....++.+...+ =|+|||.+-.. .....+.+...+.....+.-||+|-|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1123333445554444 49999998432 2234567777787777778999999975
No 375
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.72 E-value=0.027 Score=58.92 Aligned_cols=96 Identities=21% Similarity=0.235 Sum_probs=49.4
Q ss_pred HHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCC-eEEEEEeCCCccHHHHHHHHHHHhcCCCC
Q 002362 179 KNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFD-KILWVCVSETFEEFRVAKAIVEALDGHES 257 (930)
Q Consensus 179 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 257 (930)
...+++.+.. .-+-+.++|+.|+|||++++..... .. ... .+.-++.+..-+...+ +.++++--....
T Consensus 22 ~~~ll~~l~~-------~~~pvLl~G~~GtGKT~li~~~l~~--l~-~~~~~~~~~~~s~~Tts~~~-q~~ie~~l~k~~ 90 (272)
T PF12775_consen 22 YSYLLDLLLS-------NGRPVLLVGPSGTGKTSLIQNFLSS--LD-SDKYLVITINFSAQTTSNQL-QKIIESKLEKRR 90 (272)
T ss_dssp HHHHHHHHHH-------CTEEEEEESSTTSSHHHHHHHHHHC--ST-TCCEEEEEEES-TTHHHHHH-HHCCCTTECECT
T ss_pred HHHHHHHHHH-------cCCcEEEECCCCCchhHHHHhhhcc--CC-ccccceeEeeccCCCCHHHH-HHHHhhcEEcCC
Confidence 4556666654 2356799999999999999987652 11 111 2334455554443333 233222111000
Q ss_pred CCccHHHHHHHHHHHhcCceEEEEEeCccccCccChh
Q 002362 258 RLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWE 294 (930)
Q Consensus 258 ~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~ 294 (930)
. . ...--.+|+.++++||+.-...+.|.
T Consensus 91 ~-~--------~~gP~~~k~lv~fiDDlN~p~~d~yg 118 (272)
T PF12775_consen 91 G-R--------VYGPPGGKKLVLFIDDLNMPQPDKYG 118 (272)
T ss_dssp T-E--------EEEEESSSEEEEEEETTT-S---TTS
T ss_pred C-C--------CCCCCCCcEEEEEecccCCCCCCCCC
Confidence 0 0 00001478899999999766555554
No 376
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.65 E-value=0.07 Score=59.04 Aligned_cols=87 Identities=18% Similarity=0.111 Sum_probs=48.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCC------CCCCccH-----HHH
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGH------ESRLGEF-----QSL 265 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~------~~~~~~~-----~~~ 265 (930)
-..++|+|..|+|||||++.+.... .....++++.-....++.++....+...... ..+.... ...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 4579999999999999999887621 2223445544333444554444333332110 1111111 122
Q ss_pred HHHHHHHh--cCceEEEEEeCcc
Q 002362 266 IKHIYESV--AGMCFLLVLDDVW 286 (930)
Q Consensus 266 ~~~l~~~l--~~kr~LlVlDdv~ 286 (930)
...+.+++ +++.+|+++||+-
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchH
Confidence 23344554 5899999999993
No 377
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.65 E-value=0.041 Score=53.38 Aligned_cols=22 Identities=41% Similarity=0.532 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhch
Q 002362 199 IISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 378
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.59 E-value=0.061 Score=52.54 Aligned_cols=21 Identities=43% Similarity=0.650 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
+|+|.|..|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 379
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.59 E-value=0.17 Score=50.56 Aligned_cols=119 Identities=16% Similarity=0.142 Sum_probs=60.4
Q ss_pred eEEEEEEecCCChHHHHHHHHhchH--H-HHhc--CC---------------eEEEEEeCCCccH--HHHHHHHHHHhcC
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHE--E-VKRK--FD---------------KILWVCVSETFEE--FRVAKAIVEALDG 254 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~--~-~~~~--F~---------------~~~wv~vs~~~~~--~~~~~~i~~~l~~ 254 (930)
-.+++|+|..|.|||||.+.+.... . ..+. |+ .+.++ .+.... .....++++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v--~q~~~~~~~~~~~~~l~~~-- 101 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLA--FQYPPEIPGVKNADFLRYV-- 101 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEe--ecChhhccCccHHHHHhhc--
Confidence 4689999999999999999887741 0 0000 00 01121 111110 00111111111
Q ss_pred CCCCCccHHHHHHHHHHHhcCceEEEEEeCcccc-CccChhhhhhhhccC-CCCcEEEEEcCChHHHh
Q 002362 255 HESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDG-NYMKWEPFFHCLKNG-LHRSKILVTTRKKSVAS 320 (930)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 320 (930)
.......+...-.+...+-..+=++++|+.-.. +......+...+..- ..|.-||++|.+.....
T Consensus 102 -~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 102 -NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 011222333344455566666679999997432 222334444444432 23566888888877655
No 380
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.59 E-value=0.24 Score=57.05 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=35.8
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhch
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
..++|+...+.++...+..... .-..|.|.|.+|+|||++|+.+...
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~----~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSR----SSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhc----cCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 3588988888887776643322 3446889999999999999998773
No 381
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.18 Score=50.06 Aligned_cols=98 Identities=16% Similarity=0.178 Sum_probs=57.1
Q ss_pred cCCceecchhhHHHHHHHhccCCCC-------CCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCcc
Q 002362 168 DEEEICGRVDEKNELLSKLLCESSD-------SPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFE 240 (930)
Q Consensus 168 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 240 (930)
...++=|-.++++++.+....+--+ +-+.++-|..+|++|.|||-+|+.|+| +....| +.|-.
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf-----irvig--- 244 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF-----IRVIG--- 244 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE-----Eeehh---
Confidence 3445667777777777655332100 123567789999999999999999999 444433 33321
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc-CceEEEEEeCcc
Q 002362 241 EFRVAKAIVEALDGHESRLGEFQSLIKHIYESVA-GMCFLLVLDDVW 286 (930)
Q Consensus 241 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~ 286 (930)
.+-+++-+. +.......+.+.-+ .|-++|+||.++
T Consensus 245 selvqkyvg-----------egarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 245 SELVQKYVG-----------EGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred HHHHHHHhh-----------hhHHHHHHHHHHhcccceEEEEeeccc
Confidence 111111111 12334444545444 455788899884
No 382
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.54 E-value=0.17 Score=51.00 Aligned_cols=180 Identities=12% Similarity=0.132 Sum_probs=99.3
Q ss_pred eecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchH----HHHhcCCeEEEEEeCCC---------
Q 002362 172 ICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHE----EVKRKFDKILWVCVSET--------- 238 (930)
Q Consensus 172 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~vs~~--------- 238 (930)
+.++++....+..... ..+..-+.++|+.|.||-|.+..+.+.- ..+-.-+.+-|.+-|..
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 5566666666666553 2357889999999999999887665531 11123345555553332
Q ss_pred -c-----------cHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC-ceE-EEEEeCccccCccChhhhhhhhccCC
Q 002362 239 -F-----------EEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAG-MCF-LLVLDDVWDGNYMKWEPFFHCLKNGL 304 (930)
Q Consensus 239 -~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~ 304 (930)
+ .-+-+.++|+++...... + ..++ +.| ++|+-.+++-..++-..++...-.-.
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~q----i---------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQ----I---------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcc----h---------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 1 112233444443322110 0 0122 233 56666665543333344444444434
Q ss_pred CCcEEEEEcCCh-HHHhhh-CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchh
Q 002362 305 HRSKILVTTRKK-SVASMM-GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPL 374 (930)
Q Consensus 305 ~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPL 374 (930)
..+|+|+...+. .+-..+ ...-.+.+...+++|....+.+.+-..+- ..+ ++++.+|+++++|.--
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~lp---~~~l~rIa~kS~~nLR 223 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-QLP---KELLKRIAEKSNRNLR 223 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-cCc---HHHHHHHHHHhcccHH
Confidence 557776644332 111112 22446889999999999999887643332 112 5678999999998654
No 383
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.53 E-value=0.2 Score=55.37 Aligned_cols=88 Identities=16% Similarity=0.235 Sum_probs=47.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCC-CccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSE-TFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVA 274 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (930)
.-.+++++|..|+||||++..+.........-+.+..+.... .....+-+....+.++.+.....+..++...+ ..+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al-~~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLML-HELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHH-HHhc
Confidence 457999999999999999988876322222223445554332 12222334444444444333333344433333 3344
Q ss_pred CceEEEEEeCc
Q 002362 275 GMCFLLVLDDV 285 (930)
Q Consensus 275 ~kr~LlVlDdv 285 (930)
++. ++++|-.
T Consensus 269 ~~d-~VLIDTa 278 (420)
T PRK14721 269 GKH-MVLIDTV 278 (420)
T ss_pred CCC-EEEecCC
Confidence 443 5667765
No 384
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.52 E-value=0.035 Score=56.34 Aligned_cols=20 Identities=35% Similarity=0.652 Sum_probs=18.7
Q ss_pred EEEEecCCChHHHHHHHHhc
Q 002362 200 ISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 200 i~I~G~gGiGKTtLa~~v~~ 219 (930)
|.|+|++|+||||+|+.+..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999998866
No 385
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.09 Score=57.60 Aligned_cols=50 Identities=24% Similarity=0.231 Sum_probs=38.0
Q ss_pred ceecch---hhHHHHHHHhccCCCC---CCCCeEEEEEEecCCChHHHHHHHHhch
Q 002362 171 EICGRV---DEKNELLSKLLCESSD---SPKGLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 171 ~~vGr~---~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
++-|-| .|+++|+++|..+..- ++.-++=|.++|++|.|||-||+.|+-.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 455655 5788889998755321 1445678999999999999999999874
No 386
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.49 E-value=0.028 Score=50.15 Aligned_cols=27 Identities=33% Similarity=0.535 Sum_probs=18.5
Q ss_pred EEEEecCCChHHHHHHHHhchHHHHhcCC
Q 002362 200 ISIIGMGGMGKTTLAQLACNHEEVKRKFD 228 (930)
Q Consensus 200 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 228 (930)
|.|.|.+|+||||+|+.++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999988 4555664
No 387
>PRK04328 hypothetical protein; Provisional
Probab=94.48 E-value=0.14 Score=52.98 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=31.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCC
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSET 238 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 238 (930)
.-.++.|.|.+|+|||+||.++... -...-...+||+..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCC
Confidence 5679999999999999999987663 2233567888887663
No 388
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.46 Score=46.89 Aligned_cols=155 Identities=15% Similarity=0.160 Sum_probs=83.6
Q ss_pred ceecc-hhhHHHHHHHhccCCCC-------CCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHH
Q 002362 171 EICGR-VDEKNELLSKLLCESSD-------SPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEF 242 (930)
Q Consensus 171 ~~vGr-~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 242 (930)
+++|+ +..+++|.+.+.-+..+ +-.+++-+.++|++|.|||-||+.|+++ ...-|+.||..-
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgse--- 216 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGSE--- 216 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechHH---
Confidence 35654 56666666655333211 1335677899999999999999999873 345567777532
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHh-cCceEEEEEeCccccCc--------------cChhhhhhhhcc--CCC
Q 002362 243 RVAKAIVEALDGHESRLGEFQSLIKHIYESV-AGMCFLLVLDDVWDGNY--------------MKWEPFFHCLKN--GLH 305 (930)
Q Consensus 243 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~ 305 (930)
-+++-|.+ .....+.+.--- ..-+-+|+.|.+++... ...-.+...+.. ..+
T Consensus 217 lvqk~ige-----------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 217 LVQKYIGE-----------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred HHHHHhhh-----------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 12222111 111112221111 23456788888754210 011122222222 235
Q ss_pred CcEEEEEcCChHHHhh--hC---CcceEeCCCCChHHHHHHHHHHH
Q 002362 306 RSKILVTTRKKSVASM--MG---STNIISIKELTEEECRLLFNKIA 346 (930)
Q Consensus 306 gs~iivTtr~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~ 346 (930)
.-+||..|..-++... .. .++.++..+-+++.-.++++-+.
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 5677777765444322 12 25678888888887778776543
No 389
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.48 E-value=0.12 Score=52.80 Aligned_cols=43 Identities=33% Similarity=0.305 Sum_probs=29.7
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETF 239 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 239 (930)
.-.++.|.|.+|+|||++|.++... ..+..=+.++||+..+..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~-~~~~~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYN-GLKNFGEKVLYVSFEEPP 60 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH-HHHHHT--EEEEESSS-H
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH-hhhhcCCcEEEEEecCCH
Confidence 5579999999999999999887653 222213567888876543
No 390
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.47 E-value=0.2 Score=50.88 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+++|+|+.|.|||||.+.+..
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6999999999999999999977
No 391
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.46 E-value=0.064 Score=54.47 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=58.9
Q ss_pred hHHHHHHHHHhcchhHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHH-hhcccCchHHHHHHHHHHhhHHhhhhhHHH
Q 002362 4 AIVSPLLEKLISFSVKEVTQQVKLVKGLEQEVEKLTIHLQMIHAVLNDA-EQRQVKEKSVRLWLGRLKDVSYDIEDVLDE 82 (930)
Q Consensus 4 ~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a-~~~~~~~~~~~~wl~~l~~~~yd~ed~ld~ 82 (930)
+.|..++.+|.. ........+.-++.+++-++.+++.+|.||+.. +..+...+....+..++...||++|+++|.
T Consensus 296 GyVdFlL~NLkd----fq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDa 371 (402)
T PF12061_consen 296 GYVDFLLKNLKD----FQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDA 371 (402)
T ss_pred cHHHHHHhhHHH----HhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeeh
Confidence 345666666666 333334456678999999999999999999987 443444445889999999999999999998
Q ss_pred HH
Q 002362 83 WI 84 (930)
Q Consensus 83 ~~ 84 (930)
+.
T Consensus 372 Ci 373 (402)
T PF12061_consen 372 CI 373 (402)
T ss_pred hh
Confidence 64
No 392
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.44 E-value=0.13 Score=53.45 Aligned_cols=129 Identities=16% Similarity=0.088 Sum_probs=66.2
Q ss_pred hHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCC-
Q 002362 178 EKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHE- 256 (930)
Q Consensus 178 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~- 256 (930)
..+.++..|.. .....-++|+|..|.|||||.+.+... + ......+++.-..- ...+-..++......-.
T Consensus 97 ~~~~~l~~l~~-----~~~~~~~~i~g~~g~GKttl~~~l~~~--~-~~~~G~i~~~g~~v-~~~d~~~ei~~~~~~~~q 167 (270)
T TIGR02858 97 AADKLLPYLVR-----NNRVLNTLIISPPQCGKTTLLRDLARI--L-STGISQLGLRGKKV-GIVDERSEIAGCVNGVPQ 167 (270)
T ss_pred cHHHHHHHHHh-----CCCeeEEEEEcCCCCCHHHHHHHHhCc--c-CCCCceEEECCEEe-ecchhHHHHHHHhccccc
Confidence 44555555553 224578999999999999999999873 2 22233444321111 00011123333222110
Q ss_pred C------CCccHHHHHHHHHHHh-cCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChHHHh
Q 002362 257 S------RLGEFQSLIKHIYESV-AGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKSVAS 320 (930)
Q Consensus 257 ~------~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 320 (930)
. +..+-......+...+ ...+=++++|.+-.. +.+..+...+. .|..||+||....+..
T Consensus 168 ~~~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 168 HDVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGRE--EDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 0 0111011111222322 245669999998542 33444444442 4678999999766644
No 393
>PRK06762 hypothetical protein; Provisional
Probab=94.42 E-value=0.029 Score=54.26 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..+|.|.|++|+||||+|+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998876
No 394
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.41 E-value=0.42 Score=48.03 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
-.+++|+|..|.|||||++.+..
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999865
No 395
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.31 Score=47.98 Aligned_cols=65 Identities=11% Similarity=0.036 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCceEEEEEeCccccC-ccChhhhhhhhcc-CCCCcEEEEEcCChHHHhhhCCcceE
Q 002362 264 SLIKHIYESVAGMCFLLVLDDVWDGN-YMKWEPFFHCLKN-GLHRSKILVTTRKKSVASMMGSTNII 328 (930)
Q Consensus 264 ~~~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~~~~~~ 328 (930)
.....+.+.+-=++-+.|||..++-- .+....+...+.. ..+|+-+|+.|..+.++..+.++.+|
T Consensus 150 kKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 150 KKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 34445555555555699999987631 1122222222222 23467788899999999888765544
No 396
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.31 E-value=0.096 Score=54.84 Aligned_cols=51 Identities=24% Similarity=0.230 Sum_probs=40.0
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
+.-+++.|+|.+|+|||++|.++.. +...+...++||+..+. ...+.+.+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHHH
Confidence 4678999999999999999999988 55666889999998764 344444433
No 397
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.27 E-value=0.17 Score=48.63 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHhch
Q 002362 198 HIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
..|.+.|.+|+||||+|+++...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 35778899999999999999873
No 398
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.79 Score=49.96 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=78.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEE-EEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILW-VCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAG 275 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 275 (930)
-|=-.++|++|.|||+++.+++|. ++.-++ +..+...+-.+ ++.++.. . .
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~------L~ydIydLeLt~v~~n~d-Lr~LL~~---------------------t-~ 285 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANY------LNYDIYDLELTEVKLDSD-LRHLLLA---------------------T-P 285 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhh------cCCceEEeeeccccCcHH-HHHHHHh---------------------C-C
Confidence 455789999999999999999883 333222 22222211111 2222211 1 3
Q ss_pred ceEEEEEeCcccc------Cc------------cChhhhhhhhc---cCCCCcE-EEEEcCChHHHhh--hCC---cceE
Q 002362 276 MCFLLVLDDVWDG------NY------------MKWEPFFHCLK---NGLHRSK-ILVTTRKKSVASM--MGS---TNII 328 (930)
Q Consensus 276 kr~LlVlDdv~~~------~~------------~~~~~l~~~l~---~~~~gs~-iivTtr~~~v~~~--~~~---~~~~ 328 (930)
.+-+||+.|++-. .. .....++.++. ..+.+-| ||+||...+-... +.+ +-.+
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHI 365 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEE
Confidence 3446677777431 00 11122333322 1222345 4567776643321 222 4467
Q ss_pred eCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHh-hhcCC
Q 002362 329 SIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGS-LMRSK 386 (930)
Q Consensus 329 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~-~l~~~ 386 (930)
++.-=+.+....||.+......+ ++ +..+|.+...|.-+.=..++. +|.++
T Consensus 366 ~mgyCtf~~fK~La~nYL~~~~~---h~----L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 366 YMGYCTFEAFKTLASNYLGIEED---HR----LFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred EcCCCCHHHHHHHHHHhcCCCCC---cc----hhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 88888899999999987754331 22 234444444454444344443 44443
No 399
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.25 E-value=0.33 Score=49.35 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
-.+++|+|..|.|||||++.+..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999875
No 400
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.23 E-value=0.11 Score=58.04 Aligned_cols=89 Identities=18% Similarity=0.082 Sum_probs=55.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCc-cHHHHHHHHHHHhcCC-------CCCCccH-----H
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETF-EEFRVAKAIVEALDGH-------ESRLGEF-----Q 263 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~-----~ 263 (930)
-..++|+|.+|+|||||+.++.+... +.+-+.++++-+.+.. .+.++..++...-... ..+.... .
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 45799999999999999998887532 2356778888776643 4455555554431111 1111111 1
Q ss_pred HHHHHHHHHh---cCceEEEEEeCcc
Q 002362 264 SLIKHIYESV---AGMCFLLVLDDVW 286 (930)
Q Consensus 264 ~~~~~l~~~l---~~kr~LlVlDdv~ 286 (930)
.....+.+++ +++++|+++|++-
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccch
Confidence 2333455665 3899999999993
No 401
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.22 E-value=0.2 Score=51.30 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=30.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCC
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSET 238 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 238 (930)
.-.++.|.|.+|+||||+|..+... ....-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccCC
Confidence 5679999999999999999987653 2223457888887543
No 402
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.21 E-value=0.16 Score=52.41 Aligned_cols=90 Identities=14% Similarity=0.121 Sum_probs=54.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHH--HhcCCeEEEEEeCCCc-cHHHHHHHHHHHhcCC-------CCCCccHH---
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEV--KRKFDKILWVCVSETF-EEFRVAKAIVEALDGH-------ESRLGEFQ--- 263 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~--- 263 (930)
-+.++|.|-.|+|||+|+..+.+...+ +++-+.++++-+.+.. .+.++..++.+.=... ..+.....
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 356899999999999999988774221 1224678888887654 4555555555431111 11111111
Q ss_pred --HHHHHHHHHh--c-CceEEEEEeCcc
Q 002362 264 --SLIKHIYESV--A-GMCFLLVLDDVW 286 (930)
Q Consensus 264 --~~~~~l~~~l--~-~kr~LlVlDdv~ 286 (930)
.....+.+++ + ++++|+++||+-
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 1223345555 3 789999999984
No 403
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.20 E-value=0.0052 Score=61.32 Aligned_cols=100 Identities=19% Similarity=0.163 Sum_probs=73.2
Q ss_pred CCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccccccc
Q 002362 550 GVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPD 629 (930)
Q Consensus 550 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~ 629 (930)
++.+++.|.+.++...++ .++..|+.|.||.|+-|+ |..+ ..+..+..|+.|.|+.|.|..+-+
T Consensus 17 dl~~vkKLNcwg~~L~DI--------sic~kMp~lEVLsLSvNk-------IssL-~pl~rCtrLkElYLRkN~I~sldE 80 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--------SICEKMPLLEVLSLSVNK-------ISSL-APLQRCTRLKELYLRKNCIESLDE 80 (388)
T ss_pred HHHHhhhhcccCCCccHH--------HHHHhcccceeEEeeccc-------cccc-hhHHHHHHHHHHHHHhcccccHHH
Confidence 356677777777764322 237889999999999544 4444 467788999999999999887643
Q ss_pred --ccccCCcccEEeccCCCCCccccc-----cccccCCcceEe
Q 002362 630 --TLCELYNLQKLDISCCCKLKELPQ-----GIGKLINMRHLL 665 (930)
Q Consensus 630 --~i~~L~~L~~L~l~~~~~~~~lp~-----~i~~L~~L~~L~ 665 (930)
-+.+|++|++|.|..|.-...-+. .+.-|++|+.|+
T Consensus 81 L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 81 LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 467899999999998875554443 245678888886
No 404
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.19 E-value=0.22 Score=58.96 Aligned_cols=87 Identities=15% Similarity=0.199 Sum_probs=50.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCcc--HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFE--EFRVAKAIVEALDGHESRLGEFQSLIKHIYESVA 274 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (930)
.+|+.++|+.|+||||++.+++........-..+..+... .+. ..+-++...+.++.+.....+.+++...+. .++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-ALG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-Hhc
Confidence 4799999999999999998888742212112345555543 232 334455555555544333345555554443 344
Q ss_pred CceEEEEEeCcc
Q 002362 275 GMCFLLVLDDVW 286 (930)
Q Consensus 275 ~kr~LlVlDdv~ 286 (930)
++. +|++|-.-
T Consensus 263 ~~D-~VLIDTAG 273 (767)
T PRK14723 263 DKH-LVLIDTVG 273 (767)
T ss_pred CCC-EEEEeCCC
Confidence 443 67777764
No 405
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.18 E-value=0.25 Score=49.02 Aligned_cols=118 Identities=17% Similarity=0.122 Sum_probs=58.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEE---------------EeCCCc---cHHHHHHHHHHHhcCCCCC
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWV---------------CVSETF---EEFRVAKAIVEALDGHESR 258 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv---------------~vs~~~---~~~~~~~~i~~~l~~~~~~ 258 (930)
-.+++|.|..|.|||||.+.+..-.. .......+++ .+.+.. ....+...+.-..... .
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~--~ 111 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--G 111 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc--c
Confidence 46899999999999999999977320 0112222221 111211 1112222221110000 1
Q ss_pred CccHHHHHHHHHHHhcCceEEEEEeCcccc-CccChhhhhhhhccC-CCCcEEEEEcCChH
Q 002362 259 LGEFQSLIKHIYESVAGMCFLLVLDDVWDG-NYMKWEPFFHCLKNG-LHRSKILVTTRKKS 317 (930)
Q Consensus 259 ~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~ 317 (930)
....+...-.+...+-.++-++++|+.-.. +......+...+..- ..|.-||++|.+..
T Consensus 112 LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 222233333455556566679999997432 222334444444432 23666888888753
No 406
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.18 E-value=0.24 Score=49.56 Aligned_cols=61 Identities=15% Similarity=0.267 Sum_probs=35.3
Q ss_pred HHHHHhcCceEEEEEeCcccc-CccChh-hhhhhhccCC-C-CcEEEEEcCChHHHhhhCCcceEeC
Q 002362 268 HIYESVAGMCFLLVLDDVWDG-NYMKWE-PFFHCLKNGL-H-RSKILVTTRKKSVASMMGSTNIISI 330 (930)
Q Consensus 268 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~-~l~~~l~~~~-~-gs~iivTtr~~~v~~~~~~~~~~~l 330 (930)
.+...+....-++++|+.-.. +..... .+...+..-. . |.-||++|.+.+.... ...++.+
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l 195 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRV 195 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEE
Confidence 345566677779999998542 122234 4555554322 2 5568888888776543 3344444
No 407
>PRK03839 putative kinase; Provisional
Probab=94.17 E-value=0.032 Score=54.75 Aligned_cols=21 Identities=48% Similarity=0.770 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.|.|+|++|+||||+|+.+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999987
No 408
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.13 E-value=0.35 Score=49.12 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=20.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
-.+++|+|..|.|||||++.+..
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999876
No 409
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.12 E-value=0.23 Score=55.90 Aligned_cols=88 Identities=11% Similarity=0.151 Sum_probs=45.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCC-CccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSE-TFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAG 275 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 275 (930)
.+|++++|+.|+||||++.+++.....+..-..+..|.... .....+-++...+..+.......+..+....+ ..+.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 47999999999999999999987422222222455555432 11222333333444443322222222222222 23444
Q ss_pred ceEEEEEeCcc
Q 002362 276 MCFLLVLDDVW 286 (930)
Q Consensus 276 kr~LlVlDdv~ 286 (930)
+ ..+++|-.-
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 4 366777764
No 410
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.10 E-value=0.093 Score=58.96 Aligned_cols=96 Identities=19% Similarity=0.150 Sum_probs=54.9
Q ss_pred HHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHh-cCCeEE-EEEeCCCccHHHHHHHHHHHhcCC---
Q 002362 181 ELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKR-KFDKIL-WVCVSETFEEFRVAKAIVEALDGH--- 255 (930)
Q Consensus 181 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~-wv~vs~~~~~~~~~~~i~~~l~~~--- 255 (930)
++++.|..-. .-....|+|.+|+|||||++.+.+. +.. +-++.+ .+-|.+..... .+|.+.+...
T Consensus 405 RvIDll~PIG-----kGQR~LIvgpp~aGKTtLL~~IAn~--i~~n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVa 474 (672)
T PRK12678 405 RVIDLIMPIG-----KGQRGLIVSPPKAGKTTILQNIANA--ITTNNPECHLMVVLVDERPEEV---TDMQRSVKGEVIA 474 (672)
T ss_pred eeeeeecccc-----cCCEeEEeCCCCCCHHHHHHHHHHH--HhhcCCCeEEEEEEEeCchhhH---HHHHHhccceEEE
Confidence 5566665422 3457899999999999999999983 332 334443 34455443222 2233333111
Q ss_pred -CCCC-----ccHHHHHHHHHHHh--cCceEEEEEeCcc
Q 002362 256 -ESRL-----GEFQSLIKHIYESV--AGMCFLLVLDDVW 286 (930)
Q Consensus 256 -~~~~-----~~~~~~~~~l~~~l--~~kr~LlVlDdv~ 286 (930)
..+. .....+.-.+.+++ .++.+||++|++-
T Consensus 475 sT~D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 475 STFDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 1111 11223333445555 6899999999983
No 411
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.08 E-value=0.15 Score=50.91 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.6
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhc
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
....+|+|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999977
No 412
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=94.08 E-value=0.52 Score=43.84 Aligned_cols=78 Identities=14% Similarity=0.257 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHhcchhHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhccc-CchHHHHHHHHHHhhHHhhhhhHH
Q 002362 3 DAIVSPLLEKLISFSVKEVTQQVKLVKGLEQEVEKLTIHLQMIHAVLNDAEQRQV-KEKSVRLWLGRLKDVSYDIEDVLD 81 (930)
Q Consensus 3 ~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~-~~~~~~~wl~~l~~~~yd~ed~ld 81 (930)
.|+++.+++.+.. .+.+.......++.-+++|..+++.|..++++.+.-.. -+..-+.-++++.+...+++++++
T Consensus 8 gaalG~~~~eLlk----~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~ 83 (147)
T PF05659_consen 8 GAALGAVFGELLK----AVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVE 83 (147)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 3455555555554 66677777778888999999999999999999887432 122326678889999999999998
Q ss_pred HHH
Q 002362 82 EWI 84 (930)
Q Consensus 82 ~~~ 84 (930)
.|.
T Consensus 84 k~s 86 (147)
T PF05659_consen 84 KCS 86 (147)
T ss_pred Hhc
Confidence 865
No 413
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.07 E-value=0.066 Score=65.67 Aligned_cols=183 Identities=17% Similarity=0.172 Sum_probs=92.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcC---CeEEEEEeCC-----CccHH-HHHHHHHHHhcCCCCCCccHHHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKF---DKILWVCVSE-----TFEEF-RVAKAIVEALDGHESRLGEFQSLI 266 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~-----~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~ 266 (930)
...-+.|+|.+|.||||..+.++-.. ..+.+ +..+++.+.. .+... .+..-+...+..... ..+..
T Consensus 221 ~~~~~~Ilg~pGsGKTtfl~~lA~~~-~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~----~~~~~ 295 (824)
T COG5635 221 KYAKLLILGAPGSGKTTFLQRLALWL-AQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGI----AKQLI 295 (824)
T ss_pred hhhheeeecCCCCCceehHHHHHHHh-ccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCC----cchhh
Confidence 45579999999999999998876531 11222 3445554431 11111 222222222222211 11222
Q ss_pred HHHHHHhcCceEEEEEeCccccCccChh----hhhhhhccCCCCcEEEEEcCChHHHhhhCCcceEeCCCCChHHHHHHH
Q 002362 267 KHIYESVAGMCFLLVLDDVWDGNYMKWE----PFFHCLKNGLHRSKILVTTRKKSVASMMGSTNIISIKELTEEECRLLF 342 (930)
Q Consensus 267 ~~l~~~l~~kr~LlVlDdv~~~~~~~~~----~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~~~~~lf 342 (930)
....+.++..++++++|.++......-. .+...+ ..-+.+.||+|+|....-........+++..+.++.-....
T Consensus 296 ~~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~-~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~ 374 (824)
T COG5635 296 EAHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFL-QEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFI 374 (824)
T ss_pred HHHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHh-hhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHH
Confidence 2225678889999999998764321111 111112 22357899999997655544444445666666655443222
Q ss_pred H--------HHHcCCCCch---hhHHHHHHHHHHHHHcCCchhHHHHHHhhhc
Q 002362 343 N--------KIAFSDRPIE---EREKLEQIGRKIANKCKGLPLAAKIIGSLMR 384 (930)
Q Consensus 343 ~--------~~~~~~~~~~---~~~~l~~~~~~i~~~c~glPLai~~~~~~l~ 384 (930)
. ...++..... ....+..-...-.+.....|+++.+.+..-.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~ 427 (824)
T COG5635 375 LYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQ 427 (824)
T ss_pred HHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhh
Confidence 2 1112221111 0011111122333444778988888875444
No 414
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.06 E-value=0.3 Score=48.39 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
-.+++|+|..|.|||||++.++.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999985
No 415
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.06 E-value=0.069 Score=52.57 Aligned_cols=119 Identities=15% Similarity=0.126 Sum_probs=57.6
Q ss_pred EEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCC---CCCccHHHHHHHHHHHhc-
Q 002362 199 IISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHE---SRLGEFQSLIKHIYESVA- 274 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~l~- 274 (930)
++.|.|..|.||||+.+.+.-... -.+-.+.+|..-.. -....++...++... ........-...+...+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~-la~~G~~v~a~~~~----~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~ 75 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVI-MAQIGSFVPAESAE----LPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKN 75 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH-HHHhCCCeeehheE----ecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHh
Confidence 467999999999999999985322 22222222211000 000111111111111 111122222223444443
Q ss_pred -CceEEEEEeCccccC-ccChhh----hhhhhccCCCCcEEEEEcCChHHHhhhC
Q 002362 275 -GMCFLLVLDDVWDGN-YMKWEP----FFHCLKNGLHRSKILVTTRKKSVASMMG 323 (930)
Q Consensus 275 -~kr~LlVlDdv~~~~-~~~~~~----l~~~l~~~~~gs~iivTtr~~~v~~~~~ 323 (930)
.++-|+++|..-..- ...-.. +...+.. ..+..+|++|...++...+.
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLAD 129 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHhh
Confidence 377899999985421 111111 2222222 13678999999988776543
No 416
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.39 Score=50.83 Aligned_cols=50 Identities=22% Similarity=0.291 Sum_probs=33.2
Q ss_pred ceecchhhHHHHHHHhccCC------CCCCCCeEEEEEEecCCChHHHHHHHHhch
Q 002362 171 EICGRVDEKNELLSKLLCES------SDSPKGLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 171 ~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
++.|.++.++-|.+...-+- .+....=+-|..+|++|.|||.||+.|+..
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATE 268 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATE 268 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHh
Confidence 45666666655555543221 011224467899999999999999999984
No 417
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.05 E-value=0.36 Score=48.27 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHhch
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
-.+++|+|..|.|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 359999999999999999998774
No 418
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.05 E-value=0.24 Score=55.15 Aligned_cols=89 Identities=20% Similarity=0.112 Sum_probs=54.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCc-cHHHHHHHHHHHhcCC-------CCCCccHH-----
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETF-EEFRVAKAIVEALDGH-------ESRLGEFQ----- 263 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 263 (930)
-..++|.|..|+|||||+..+...... ++=+.++++-+.+.. .+.++..++...-... ..+.....
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 457999999999999999988764221 122467777776543 4455666655431111 11111111
Q ss_pred HHHHHHHHHh---cCceEEEEEeCcc
Q 002362 264 SLIKHIYESV---AGMCFLLVLDDVW 286 (930)
Q Consensus 264 ~~~~~l~~~l---~~kr~LlVlDdv~ 286 (930)
...-.+.+++ +++++||++|++-
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchH
Confidence 2233355665 6899999999993
No 419
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.04 E-value=0.029 Score=54.46 Aligned_cols=23 Identities=48% Similarity=0.567 Sum_probs=21.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
-.+|+|-||-|+||||||+.+.+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~ 26 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAE 26 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHH
Confidence 46899999999999999999887
No 420
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.03 E-value=0.063 Score=48.86 Aligned_cols=40 Identities=20% Similarity=0.081 Sum_probs=28.5
Q ss_pred hhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhch
Q 002362 177 DEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 177 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
++.+++.+.|...-. .-.+|.+.|.-|.||||+++.++..
T Consensus 6 ~~t~~l~~~l~~~l~----~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPLD----FGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhCC----CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 344555555543221 3458999999999999999999874
No 421
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.02 E-value=0.3 Score=48.55 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhch
Q 002362 198 HIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
++++|.|+.|.|||||.+.+.-.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 79999999999999999999763
No 422
>PRK05973 replicative DNA helicase; Provisional
Probab=94.00 E-value=0.32 Score=49.33 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=33.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAI 248 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (930)
.-.++.|.|.+|+|||++|.++... ...+=..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEEeCC--HHHHHHHH
Confidence 4568999999999999999988763 2233345777776553 44444443
No 423
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.96 E-value=0.23 Score=51.57 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhch
Q 002362 199 IISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
.|.++|++|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999863
No 424
>PRK00625 shikimate kinase; Provisional
Probab=93.93 E-value=0.036 Score=53.51 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.1
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.|.++||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999876
No 425
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.93 E-value=0.042 Score=54.31 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
+..+|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998875
No 426
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.93 E-value=0.29 Score=48.50 Aligned_cols=42 Identities=29% Similarity=0.433 Sum_probs=28.5
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcC--------CeEEEEEeCCCc
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKF--------DKILWVCVSETF 239 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~vs~~~ 239 (930)
.++.|+|.+|+||||++..+.........| ..++|+......
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 488999999999999998887753322222 368888776653
No 427
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.91 E-value=0.4 Score=49.86 Aligned_cols=89 Identities=12% Similarity=0.154 Sum_probs=47.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCc-cHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc-
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETF-EEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVA- 274 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 274 (930)
..+++++|.+|+||||+++.+... ....=..+.+++..... ....-++.-.+.++.+.....+.+.+...+.. ++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~-l~~ 151 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTY-FKE 151 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHH-HHh
Confidence 468999999999999999988763 22222345556554221 11111222222222221122344444444432 33
Q ss_pred -CceEEEEEeCcccc
Q 002362 275 -GMCFLLVLDDVWDG 288 (930)
Q Consensus 275 -~kr~LlVlDdv~~~ 288 (930)
.+.=++++|..-..
T Consensus 152 ~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 152 EARVDYILIDTAGKN 166 (270)
T ss_pred cCCCCEEEEECCCCC
Confidence 23458889988543
No 428
>PRK04040 adenylate kinase; Provisional
Probab=93.90 E-value=0.044 Score=53.88 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+|.|+|++|+||||+++.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999999877
No 429
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.90 E-value=0.11 Score=56.60 Aligned_cols=50 Identities=26% Similarity=0.263 Sum_probs=37.0
Q ss_pred CceecchhhHHHHHHHhccC-------CCC-CCCCeEEEEEEecCCChHHHHHHHHhc
Q 002362 170 EEICGRVDEKNELLSKLLCE-------SSD-SPKGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~-------~~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..++|.++.++.+..++... ... .......+.++|++|+||||||+.+..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 35889999999888877531 000 011246789999999999999999987
No 430
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.86 E-value=0.21 Score=59.34 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=56.5
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCC-----CCccHHHHHHHH
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHES-----RLGEFQSLIKHI 269 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 269 (930)
+.-+++-|+|.+|+||||||.+++.. ....=..++|+...+.++.. .+++++.... .....++....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 35689999999999999999877653 33334678999988877743 5666654321 122334455555
Q ss_pred HHHhc-CceEEEEEeCcc
Q 002362 270 YESVA-GMCFLLVLDDVW 286 (930)
Q Consensus 270 ~~~l~-~kr~LlVlDdv~ 286 (930)
...++ ++--|||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55453 455689999985
No 431
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.83 E-value=0.38 Score=57.18 Aligned_cols=57 Identities=14% Similarity=0.106 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCceEEEEEeCcccc-CccChhhhhhhhcc-CCCCcEEEEEcCChHHH
Q 002362 263 QSLIKHIYESVAGMCFLLVLDDVWDG-NYMKWEPFFHCLKN-GLHRSKILVTTRKKSVA 319 (930)
Q Consensus 263 ~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~ 319 (930)
+...-.+.+.+-.++-+++||..-+. |.+.=..+...+.. ....+.|+||-|..-+.
T Consensus 614 QrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~ 672 (709)
T COG2274 614 QRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR 672 (709)
T ss_pred HHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh
Confidence 34444566677778889999998442 11122335555554 33456788888876544
No 432
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.82 E-value=0.3 Score=57.08 Aligned_cols=115 Identities=13% Similarity=0.068 Sum_probs=62.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcC---CeEEEEEeCCCccHHHHHHHHHHHhcCCCCCC---ccHHHHHHHHH
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKF---DKILWVCVSETFEEFRVAKAIVEALDGHESRL---GEFQSLIKHIY 270 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~ 270 (930)
-++..|.|.+|.||||++..+... ..... ...+.+......-...+.+.+...+..-.... .........++
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~--l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiH 244 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAA--LIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLH 244 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH--HHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHH
Confidence 468999999999999999888763 32222 24677777666555556555544332110000 00000112222
Q ss_pred HHhc----C--------ce---EEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCCh
Q 002362 271 ESVA----G--------MC---FLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKK 316 (930)
Q Consensus 271 ~~l~----~--------kr---~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 316 (930)
+.|. + .. =++|+|.+.-.+...+..+...++ +++|+|+---..
T Consensus 245 rlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~ 302 (615)
T PRK10875 245 RLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRD 302 (615)
T ss_pred HHhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchh
Confidence 2221 1 11 289999986654444445555554 457877765443
No 433
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.17 Score=54.14 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=52.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCC-----CccHHHHHHHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESR-----LGEFQSLIKHIY 270 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 270 (930)
.-.++.|-|-+|||||||..+++. +....- .++||+-.+...-.+ --++.++..... ..+++...+.+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES~~Qik---lRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEESLQQIK---LRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcCHHHHH---HHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 457999999999999999999988 455444 788877665433222 233444432221 233444433333
Q ss_pred HHhcCceEEEEEeCccc
Q 002362 271 ESVAGMCFLLVLDDVWD 287 (930)
Q Consensus 271 ~~l~~kr~LlVlDdv~~ 287 (930)
+.+.-++|+|-+..
T Consensus 166 ---~~~p~lvVIDSIQT 179 (456)
T COG1066 166 ---QEKPDLVVIDSIQT 179 (456)
T ss_pred ---hcCCCEEEEeccce
Confidence 36677999999844
No 434
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.80 E-value=0.1 Score=48.39 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=27.1
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCC
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSE 237 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 237 (930)
.+|.|+|..|+|||||++.+.+. -.+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~-l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE-LKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH-HHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HhHcCCceEEEEEccC
Confidence 47999999999999999999994 2234455555666544
No 435
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.78 E-value=0.5 Score=48.13 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhch
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998763
No 436
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.78 E-value=0.59 Score=48.00 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
-.+++|+|..|.|||||++.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPR 50 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999865
No 437
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.78 E-value=1.1 Score=47.02 Aligned_cols=59 Identities=12% Similarity=0.129 Sum_probs=41.5
Q ss_pred CceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCC-hHHHhh-hCCcceEeCCCC
Q 002362 275 GMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRK-KSVASM-MGSTNIISIKEL 333 (930)
Q Consensus 275 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~~L 333 (930)
+++=++|+|+++....+.+..+...+-....++.+|++|.+ ..+... .+-...+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 55558899999988878888888888777777776666655 444433 233567777765
No 438
>PRK15453 phosphoribulokinase; Provisional
Probab=93.77 E-value=0.35 Score=49.96 Aligned_cols=77 Identities=18% Similarity=0.143 Sum_probs=44.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCC-eEEEEEeCC--CccHHHHHHHHHHH--h--cCCC--CCCccHHHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFD-KILWVCVSE--TFEEFRVAKAIVEA--L--DGHE--SRLGEFQSLI 266 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~--~~~~~~~~~~i~~~--l--~~~~--~~~~~~~~~~ 266 (930)
+..+|+|.|.+|+||||+|+.+.+ ..+ +.. ..+.++... .++....-..+... - +-.. ++..+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~--if~-~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK--IFR-RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHh-hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 567999999999999999998875 222 222 233444322 12333332222211 1 1112 5666778888
Q ss_pred HHHHHHhcC
Q 002362 267 KHIYESVAG 275 (930)
Q Consensus 267 ~~l~~~l~~ 275 (930)
+.++++.++
T Consensus 81 ~~l~~l~~~ 89 (290)
T PRK15453 81 QLFREYGET 89 (290)
T ss_pred HHHHHHhcC
Confidence 777776553
No 439
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.75 E-value=0.42 Score=49.21 Aligned_cols=63 Identities=14% Similarity=0.109 Sum_probs=36.2
Q ss_pred HHHHHHHhcCceEEEEEeCcccc-CccChhhhhhhhccCCCCcEEEEEcCChHHHhhhCCcceEeC
Q 002362 266 IKHIYESVAGMCFLLVLDDVWDG-NYMKWEPFFHCLKNGLHRSKILVTTRKKSVASMMGSTNIISI 330 (930)
Q Consensus 266 ~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l 330 (930)
.-.+...+-.++-++++|+.... +......+...+..-..|..||++|.+...... .++.+.+
T Consensus 145 rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~--~d~~~~l 208 (236)
T cd03253 145 RVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN--ADKIIVL 208 (236)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh--CCEEEEE
Confidence 33455566667779999998542 222234455555432236668888888766643 3444443
No 440
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.74 E-value=0.12 Score=53.19 Aligned_cols=87 Identities=20% Similarity=0.119 Sum_probs=49.3
Q ss_pred eEEEEEEecCCChHHHHH-HHHhchHHHHhcCCeE-EEEEeCCCc-cHHHHHHHHHHHhcCC-------CCCCccHHH--
Q 002362 197 LHIISIIGMGGMGKTTLA-QLACNHEEVKRKFDKI-LWVCVSETF-EEFRVAKAIVEALDGH-------ESRLGEFQS-- 264 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~-- 264 (930)
-+-++|+|..|+|||+|| +.+.+. .+-+.+ +++-+.+.. .+.++.+++.+.-... ..+......
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 357899999999999996 555541 223444 666666653 4455555555432111 111111111
Q ss_pred ---HHHHHHHHh--cCceEEEEEeCccc
Q 002362 265 ---LIKHIYESV--AGMCFLLVLDDVWD 287 (930)
Q Consensus 265 ---~~~~l~~~l--~~kr~LlVlDdv~~ 287 (930)
..-.+.+++ +++.+|+|+||+-.
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr 172 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLSK 172 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChHH
Confidence 122333444 58999999999943
No 441
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.70 E-value=0.11 Score=51.10 Aligned_cols=43 Identities=30% Similarity=0.301 Sum_probs=28.4
Q ss_pred EEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHH
Q 002362 199 IISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEF 242 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 242 (930)
.|+|.|-||+||||+|...... -...+=..+.=|.+..+++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYNVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCceEEEEeCCCCCChH
Confidence 5899999999999999885552 222331235556666666543
No 442
>PF13479 AAA_24: AAA domain
Probab=93.69 E-value=0.23 Score=50.05 Aligned_cols=32 Identities=38% Similarity=0.330 Sum_probs=24.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCC
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSET 238 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 238 (930)
.-.+.|+|.+|+||||+|..+ +..+++.....
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g 34 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----------PKPLFIDTENG 34 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----------CCeEEEEeCCC
Confidence 346899999999999999866 45666666543
No 443
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.67 E-value=0.2 Score=53.68 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=18.9
Q ss_pred EEEEecCCChHHHHHHHHhch
Q 002362 200 ISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 200 i~I~G~gGiGKTtLa~~v~~~ 220 (930)
+.+.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999874
No 444
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.65 E-value=0.22 Score=55.07 Aligned_cols=87 Identities=17% Similarity=0.104 Sum_probs=48.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCC-------CCCCccHH-----H
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGH-------ESRLGEFQ-----S 264 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-------~~~~~~~~-----~ 264 (930)
-..++|+|..|+|||||++.+..... ....++...-.....+.++..+.+..-... ..+..... .
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 35799999999999999998887321 122232222223334445555444332111 11111111 1
Q ss_pred HHHHHHHHh--cCceEEEEEeCcc
Q 002362 265 LIKHIYESV--AGMCFLLVLDDVW 286 (930)
Q Consensus 265 ~~~~l~~~l--~~kr~LlVlDdv~ 286 (930)
....+.+++ +++++|+++||+-
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccchh
Confidence 223345555 5899999999994
No 445
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.60 E-value=0.1 Score=62.88 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHhch
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
+.+++.|.|+.|.||||+.+.+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 3579999999999999999998763
No 446
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.60 E-value=1.5 Score=45.30 Aligned_cols=96 Identities=17% Similarity=0.223 Sum_probs=66.5
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCce
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMC 277 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (930)
+.+.++|+.|+|||+-++.+++. .+....+..+..++...+...+........ ..........+...+.+..
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~--~~~~~d~~~~~~~~l~~~~ 166 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGAT--DGTINDLTERLMIRLRDTV 166 (297)
T ss_pred ceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHccCc
Confidence 48999999999999999999883 334445567777777777666666554432 2234445555666668888
Q ss_pred EEEEEeCccccCccChhhhhhhhc
Q 002362 278 FLLVLDDVWDGNYMKWEPFFHCLK 301 (930)
Q Consensus 278 ~LlVlDdv~~~~~~~~~~l~~~l~ 301 (930)
-++++|+...-.....+.+.....
T Consensus 167 ~~iivDEA~~L~~~ale~lr~i~d 190 (297)
T COG2842 167 RLIIVDEADRLPYRALEELRRIHD 190 (297)
T ss_pred ceeeeehhhccChHHHHHHHHHHH
Confidence 899999997766566666655443
No 447
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.59 E-value=0.034 Score=32.82 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=12.6
Q ss_pred cccEEeccCCCCCccccccccc
Q 002362 636 NLQKLDISCCCKLKELPQGIGK 657 (930)
Q Consensus 636 ~L~~L~l~~~~~~~~lp~~i~~ 657 (930)
+|++||+++|. +..+|.+|++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 46667777764 4566665543
No 448
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.56 E-value=0.11 Score=46.40 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=33.9
Q ss_pred ceecchhhHHHHHHHhccCC-CCCCCCeEEEEEEecCCChHHHHHHHHhch
Q 002362 171 EICGRVDEKNELLSKLLCES-SDSPKGLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 171 ~~vGr~~~~~~l~~~L~~~~-~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
.++|..-..+.|++.+..-- +..++++-|++.+|.+|+|||.+|+.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 46666655555554443211 111457889999999999999999888775
No 449
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.55 E-value=0.12 Score=54.84 Aligned_cols=49 Identities=27% Similarity=0.313 Sum_probs=35.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHH
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKA 247 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 247 (930)
.+++.+.|.||+||||+|-..+- ........++-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999988655 34444455777777666666655543
No 450
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.53 E-value=0.19 Score=53.55 Aligned_cols=86 Identities=19% Similarity=0.125 Sum_probs=48.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCC-CccHHHHHHHHHHHhcCC-------CCCCccH-----H
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSE-TFEEFRVAKAIVEALDGH-------ESRLGEF-----Q 263 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~~~-----~ 263 (930)
-..++|+|..|.|||||.+.+..... -+..+...+.. ..++.++.......-... ..+.... .
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999999887321 23334444433 334555555444432111 1111111 1
Q ss_pred HHHHHHHHHh--cCceEEEEEeCcc
Q 002362 264 SLIKHIYESV--AGMCFLLVLDDVW 286 (930)
Q Consensus 264 ~~~~~l~~~l--~~kr~LlVlDdv~ 286 (930)
...-.+.+++ ++|.+|+++||+-
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccch
Confidence 2222334444 5899999999983
No 451
>PRK15115 response regulator GlrR; Provisional
Probab=93.52 E-value=0.53 Score=53.81 Aligned_cols=133 Identities=17% Similarity=0.103 Sum_probs=66.9
Q ss_pred ceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHH-HH
Q 002362 171 EICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKA-IV 249 (930)
Q Consensus 171 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~-i~ 249 (930)
.++|....+.++.+....... .-..|.|.|.+|+|||++|+.+.+.. ...-...+-+.+..- + ...+.. +.
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~----~~~~vli~Ge~GtGk~~lA~~ih~~s--~r~~~~f~~i~c~~~-~-~~~~~~~lf 206 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ----SDVSVLINGQSGTGKEILAQAIHNAS--PRASKPFIAINCGAL-P-EQLLESELF 206 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc----CCCeEEEEcCCcchHHHHHHHHHHhc--CCCCCCeEEEeCCCC-C-HHHHHHHhc
Confidence 467777777666665543221 22357799999999999999987631 111112233333322 1 222222 11
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCC-----------CCcEEEEEcCCh
Q 002362 250 EALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGL-----------HRSKILVTTRKK 316 (930)
Q Consensus 250 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~~ 316 (930)
....+...+... . ...+ ......-.|+||++..-.......+...+..+. ...|||.||...
T Consensus 207 g~~~~~~~~~~~--~-~~g~--~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~ 279 (444)
T PRK15115 207 GHARGAFTGAVS--N-REGL--FQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD 279 (444)
T ss_pred CCCcCCCCCCcc--C-CCCc--EEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC
Confidence 110010000000 0 0000 001222378999998766555566766665432 135888888754
No 452
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.42 E-value=0.34 Score=55.61 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=35.3
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHH
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKA 247 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 247 (930)
..-.++.|.|.+|+|||||+.++... ...+=+.++|++..+. ...+...
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eEs--~~~i~~~ 309 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEES--RAQLLRN 309 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCC--HHHHHHH
Confidence 35689999999999999999999873 3344456778776553 4444444
No 453
>PRK08149 ATP synthase SpaL; Validated
Probab=93.40 E-value=0.21 Score=55.19 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=50.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCC-CccHHHHHHHHHHHhcCC-------CCCCccH-----
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSE-TFEEFRVAKAIVEALDGH-------ESRLGEF----- 262 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~~~----- 262 (930)
+-..++|+|..|+|||||++.++... .-+.++...+.. ..++.++..+........ ..+....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 34578999999999999999888731 223444444433 334555555555432211 1111111
Q ss_pred HHHHHHHHHHh--cCceEEEEEeCcc
Q 002362 263 QSLIKHIYESV--AGMCFLLVLDDVW 286 (930)
Q Consensus 263 ~~~~~~l~~~l--~~kr~LlVlDdv~ 286 (930)
......+.+++ ++|++|+++||+-
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchH
Confidence 12233344444 5999999999993
No 454
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.40 E-value=0.045 Score=53.88 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=19.1
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998866
No 455
>PF13245 AAA_19: Part of AAA domain
Probab=93.38 E-value=0.17 Score=41.25 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=17.1
Q ss_pred eEEEEEEecCCChHHHH-HHHHhc
Q 002362 197 LHIISIIGMGGMGKTTL-AQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtL-a~~v~~ 219 (930)
-+++.|.|.+|.|||++ ++.+..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 45788899999999954 555544
No 456
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.37 E-value=0.49 Score=49.10 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhch
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
-.+++|+|..|.|||||++.++..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 358999999999999999999874
No 457
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.37 E-value=0.046 Score=54.61 Aligned_cols=21 Identities=48% Similarity=0.591 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
+|+|.|..|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998866
No 458
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.37 E-value=0.21 Score=51.04 Aligned_cols=77 Identities=21% Similarity=0.134 Sum_probs=43.8
Q ss_pred EEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCC--ccHHHHHHHHHHHh----cCCC--CCCccHHHHHHHHH
Q 002362 199 IISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSET--FEEFRVAKAIVEAL----DGHE--SRLGEFQSLIKHIY 270 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l----~~~~--~~~~~~~~~~~~l~ 270 (930)
+|+|.|..|+||||+|+.+.. ..+..=..+..++...- ++....-..+.... .-.. ++..+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~--~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH--IFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999998876 23222122444443221 22222222222221 1122 56677788888887
Q ss_pred HHhcCce
Q 002362 271 ESVAGMC 277 (930)
Q Consensus 271 ~~l~~kr 277 (930)
.+.+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 7776553
No 459
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.37 E-value=0.046 Score=53.33 Aligned_cols=21 Identities=48% Similarity=0.623 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 460
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.33 E-value=0.29 Score=54.51 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=51.9
Q ss_pred eEEEEEEecCCChHHHHH-HHHhchHHHH-----hcCCeEEEEEeCCCccHHHHHHHHHHHhcC-CC-------CCCccH
Q 002362 197 LHIISIIGMGGMGKTTLA-QLACNHEEVK-----RKFDKILWVCVSETFEEFRVAKAIVEALDG-HE-------SRLGEF 262 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-~~-------~~~~~~ 262 (930)
-..++|.|-.|+|||+|| -.+.|...+. ++-+.++++-+.+..+...-+.+.+++-+. .. .+....
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 356899999999999997 5556643221 234567888888765443333333333331 10 111111
Q ss_pred H-----HHHHHHHHHh--cCceEEEEEeCcc
Q 002362 263 Q-----SLIKHIYESV--AGMCFLLVLDDVW 286 (930)
Q Consensus 263 ~-----~~~~~l~~~l--~~kr~LlVlDdv~ 286 (930)
. -....+.+++ +++..|+|+||+-
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 1 1222334444 5899999999994
No 461
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.33 E-value=0.2 Score=55.57 Aligned_cols=89 Identities=16% Similarity=0.106 Sum_probs=55.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCc-cHHHHHHHHHHHhcCC-------CCCCccHH-----
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETF-EEFRVAKAIVEALDGH-------ESRLGEFQ----- 263 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 263 (930)
-..++|.|.+|+|||+|+..+..... +.+-+.++|+-+.+.. .+.++.+++...-... ..+.....
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 45799999999999999999877522 2344788888887654 3445555554431111 11111111
Q ss_pred HHHHHHHHHh---cCceEEEEEeCcc
Q 002362 264 SLIKHIYESV---AGMCFLLVLDDVW 286 (930)
Q Consensus 264 ~~~~~l~~~l---~~kr~LlVlDdv~ 286 (930)
.....+.+++ +++++|+++||+-
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChH
Confidence 2233445665 4689999999993
No 462
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.33 E-value=0.057 Score=52.63 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=21.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...|.|+|++|+||||+|+.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999977
No 463
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.32 E-value=0.053 Score=49.95 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=31.0
Q ss_pred EEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcC
Q 002362 199 IISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDG 254 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 254 (930)
+|.|.|++|.||||+|+.+.++ +... .| +.-.++++|++..+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~------~gl~-~v------saG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH------LGLK-LV------SAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH------hCCc-ee------eccHHHHHHHHHcCC
Confidence 6899999999999999998873 2211 11 233678888887655
No 464
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.32 E-value=0.057 Score=52.90 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=20.0
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.++.|+|+.|+|||||++.+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 465
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.31 E-value=2.3 Score=44.71 Aligned_cols=70 Identities=13% Similarity=0.166 Sum_probs=49.3
Q ss_pred cCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCCh-HHHhhh-CCcceEeCCCCChHHHHHHHHH
Q 002362 274 AGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKK-SVASMM-GSTNIISIKELTEEECRLLFNK 344 (930)
Q Consensus 274 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~ 344 (930)
.+++-++|+|+++......+..+...+-....++.+|++|.+. .+...+ +-...+++.+ +.++..+.+..
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 3556699999999888778888888888776667777666554 444443 3366788876 66666666654
No 466
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.30 E-value=0.33 Score=53.83 Aligned_cols=87 Identities=21% Similarity=0.229 Sum_probs=51.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCC-ccHHHHHHHHHHHhcCC-------CCCCccHHH---
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSET-FEEFRVAKAIVEALDGH-------ESRLGEFQS--- 264 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 264 (930)
.-..++|+|..|+|||||++.+.+. .+.+..+++.+.+. ..+.+.+.+....-... ..+......
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~----~~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNA----PDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCC----CCCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 3458899999999999999998873 23455566655543 34445555443210000 111111111
Q ss_pred --HHHHHHHHh--cCceEEEEEeCcc
Q 002362 265 --LIKHIYESV--AGMCFLLVLDDVW 286 (930)
Q Consensus 265 --~~~~l~~~l--~~kr~LlVlDdv~ 286 (930)
....+.+++ +++++|+++||+-
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 222344555 5899999999994
No 467
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.29 E-value=0.11 Score=50.98 Aligned_cols=42 Identities=33% Similarity=0.414 Sum_probs=31.3
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhc
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+++|.+..+..+.-... +..-+.++|.+|+|||++|+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAa--------G~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA--------GGHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH--------CC--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHc--------CCCCeEEECCCCCCHHHHHHHHHH
Confidence 467888888887776654 235799999999999999998854
No 468
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.28 E-value=0.073 Score=49.31 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..+++.|+|.+|+||||+.+.+..
T Consensus 3 ~~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 3 GRKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred CceEEEEEcCCCCChHHHHHHHHH
Confidence 368999999999999999988765
No 469
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.26 E-value=0.44 Score=52.78 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...+|.++|..|+||||+|.+++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988876
No 470
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.26 E-value=0.36 Score=47.95 Aligned_cols=23 Identities=43% Similarity=0.498 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhch
Q 002362 198 HIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
..|+|.|..|+||||+|+.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999874
No 471
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.24 E-value=0.13 Score=51.40 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhch
Q 002362 198 HIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
.+++|+|..|.||||+.+.+...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 68999999999999999999853
No 472
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.22 E-value=0.17 Score=60.58 Aligned_cols=131 Identities=16% Similarity=0.113 Sum_probs=70.4
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
+.++|....+.++.+.+..... ...-|.|+|..|+||+++|+.+.+.. ...-..-+.|.+..-. ...+..++.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~s--~r~~~pfv~vnc~~~~-~~~~~~elf 397 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNES--ERAAGPYIAVNCQLYP-DEALAEEFL 397 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHhC--CccCCCeEEEECCCCC-hHHHHHHhc
Confidence 4588998888888877754432 22347899999999999999998731 1111223334444322 222222222
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCC---C--------CcEEEEEcCC
Q 002362 250 EALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGL---H--------RSKILVTTRK 315 (930)
Q Consensus 250 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~---~--------gs~iivTtr~ 315 (930)
....... ..... ..+ -....=.|+||++..........+...+..+. . ..|||.||..
T Consensus 398 g~~~~~~-~~~~~----g~~---~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 398 GSDRTDS-ENGRL----SKF---ELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred CCCCcCc-cCCCC----Cce---eECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 2110000 00000 000 01122358999998776656666777665432 1 3467777664
No 473
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.22 E-value=0.053 Score=51.30 Aligned_cols=21 Identities=33% Similarity=0.683 Sum_probs=18.9
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
++.|+|++|+||||+|+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 478999999999999999876
No 474
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.21 E-value=0.24 Score=54.66 Aligned_cols=86 Identities=17% Similarity=0.168 Sum_probs=51.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCcc-HHHHHHHHHHHhcCC-------CCCCccHH-----
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFE-EFRVAKAIVEALDGH-------ESRLGEFQ----- 263 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~----- 263 (930)
-..++|+|..|+|||||++.++.. ...+.++.+-+.+... +.++..+++..-... ..+..-..
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~----~~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRG----TTADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccC----CCCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 357999999999999999999862 1225666666666443 344555544331111 11111111
Q ss_pred HHHHHHHHHh--cCceEEEEEeCcc
Q 002362 264 SLIKHIYESV--AGMCFLLVLDDVW 286 (930)
Q Consensus 264 ~~~~~l~~~l--~~kr~LlVlDdv~ 286 (930)
...-.+.+++ +++++|+++||+-
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChH
Confidence 1222344555 6899999999993
No 475
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.19 E-value=0.19 Score=55.60 Aligned_cols=122 Identities=16% Similarity=0.081 Sum_probs=63.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCC-------CCCcc-----HH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHE-------SRLGE-----FQ 263 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-------~~~~~-----~~ 263 (930)
.-..++|+|..|.|||||++.++.... ....++.+.-.....+.+.....+..-+... .+... ..
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 345789999999999999999887421 1222333222333566666665554422111 11111 11
Q ss_pred HHHHHHHHHh--cCceEEEEEeCccccCccChhhhhhhhccC-CCCcEEEEEcCChHHHhh
Q 002362 264 SLIKHIYESV--AGMCFLLVLDDVWDGNYMKWEPFFHCLKNG-LHRSKILVTTRKKSVASM 321 (930)
Q Consensus 264 ~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~ 321 (930)
.....+.+++ ++++.|+++||+-.-- .....+...+... ..|--..+.|....+...
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr~a-~A~reisl~~~e~p~~G~~~~~~s~l~~L~ER 291 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTRFA-DARRSVDIAVKELPIGGKTLLMESYMKKLLER 291 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHHHH-HHHHHHHHHhcCCCCCCeeeeeeccchhHHHH
Confidence 2233344444 5899999999995421 1223333222111 124445555555554444
No 476
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.19 E-value=0.21 Score=55.25 Aligned_cols=87 Identities=17% Similarity=0.086 Sum_probs=51.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCcc-HHHHHHHHHHHhcCC-------CCCCccHH----
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFE-EFRVAKAIVEALDGH-------ESRLGEFQ---- 263 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~---- 263 (930)
.-..++|+|..|+|||||++.+++.. .-+.++++-+.+... +.++..+.+..-+.. ..+.....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 34678999999999999999988632 224556666665443 334444444332111 11111111
Q ss_pred -HHHHHHHHHh--cCceEEEEEeCcc
Q 002362 264 -SLIKHIYESV--AGMCFLLVLDDVW 286 (930)
Q Consensus 264 -~~~~~l~~~l--~~kr~LlVlDdv~ 286 (930)
...-.+.+++ +++.+|+++||+-
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 2223344555 5899999999993
No 477
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.18 E-value=0.17 Score=55.23 Aligned_cols=113 Identities=14% Similarity=0.088 Sum_probs=60.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGM 276 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (930)
...+.|.|+.|.||||+.+.+.. .+..+...+++.- .+.... ..... ..+-.......+.......++..++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~ti-Edp~E~--~~~~~-~~~i~q~evg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIITI-EDPIEY--VHRNK-RSLINQREVGLDTLSFANALRAALRED 195 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEEE-cCChhh--hccCc-cceEEccccCCCCcCHHHHHHHhhccC
Confidence 46899999999999999998876 3444444555542 222111 10000 000000000111123455566677777
Q ss_pred eEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChHHHh
Q 002362 277 CFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKSVAS 320 (930)
Q Consensus 277 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 320 (930)
.=.|++|.+.+. +.+... +.....|..|+.|.....+..
T Consensus 196 pd~i~vgEird~--~~~~~~---l~aa~tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 196 PDVILIGEMRDL--ETVELA---LTAAETGHLVFGTLHTNSAAQ 234 (343)
T ss_pred CCEEEEeCCCCH--HHHHHH---HHHHHcCCcEEEEEcCCCHHH
Confidence 789999999643 333332 222234555777777655443
No 478
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.16 E-value=0.36 Score=54.50 Aligned_cols=41 Identities=27% Similarity=0.310 Sum_probs=31.3
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCC
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSET 238 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 238 (930)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees 119 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEES 119 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcccc
Confidence 4569999999999999999999874 3333346788887553
No 479
>PLN02348 phosphoribulokinase
Probab=93.13 E-value=0.4 Score=52.03 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=23.0
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhc
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
....+|+|.|.+|.||||+|+.+.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999987
No 480
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=93.13 E-value=0.18 Score=51.15 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=29.9
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCcc
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFE 240 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 240 (930)
+.|+|+|-|||||||.+..+.. .....-..++-|-+....|
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsa--ala~~G~kVl~iGCDPK~D 41 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSA--ALAEMGKKVLQIGCDPKAD 41 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEESSSST
T ss_pred CeEEEEcCCCcccChhhhHHHH--HHHhccceeeEecccCCCc
Confidence 4699999999999999998876 4444456777787755443
No 481
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.12 E-value=0.12 Score=60.44 Aligned_cols=74 Identities=15% Similarity=0.140 Sum_probs=53.6
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
++++|.++.++.+...+.. .+.+.++|.+|+||||+|+.+... -...+|+..+|..-+ ..+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~--------~~~~l~~G~~G~GKttla~~l~~~-l~~~~~~~~~~~~np-~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQ--------RRHVMMIGSPGTGKSMLAKAMAEL-LPKEELQDILVYPNP-EDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHH-cChHhHHHheEeeCC-CcchHHHHHHHH
Confidence 4689998888888877652 136899999999999999998873 223346778886663 346666777776
Q ss_pred HHhc
Q 002362 250 EALD 253 (930)
Q Consensus 250 ~~l~ 253 (930)
.+++
T Consensus 101 ~~~G 104 (637)
T PRK13765 101 AGKG 104 (637)
T ss_pred HhcC
Confidence 6544
No 482
>PTZ00494 tuzin-like protein; Provisional
Probab=93.12 E-value=2.6 Score=46.00 Aligned_cols=165 Identities=15% Similarity=0.127 Sum_probs=101.7
Q ss_pred ccCCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHH
Q 002362 167 IDEEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAK 246 (930)
Q Consensus 167 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 246 (930)
.....+|.|+++-..+...|.+-+. ..++++.+.|.-|.||++|.+.....+ --..++|.+... ++-++
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE-----~~paV~VDVRg~---EDtLr 436 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVE-----GVALVHVDVGGT---EDTLR 436 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHc-----CCCeEEEEecCC---cchHH
Confidence 4456789999988888888776553 478999999999999999998875532 235667877654 45678
Q ss_pred HHHHHhcCCCCCC-cc-HHHHHHHH---HHHhcCceEEEEEeCccccCccChhhhh---hhhccCCCCcEEEEEcCChHH
Q 002362 247 AIVEALDGHESRL-GE-FQSLIKHI---YESVAGMCFLLVLDDVWDGNYMKWEPFF---HCLKNGLHRSKILVTTRKKSV 318 (930)
Q Consensus 247 ~i~~~l~~~~~~~-~~-~~~~~~~l---~~~l~~kr~LlVlDdv~~~~~~~~~~l~---~~l~~~~~gs~iivTtr~~~v 318 (930)
.|++.++.+..+. .| ++-..+.. .....++.-+||+-==.- .....+. ..|.....-+.|++---.+..
T Consensus 437 sVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREG---ssL~RVYnE~vaLacDrRlCHvv~EVplESL 513 (664)
T PTZ00494 437 SVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREG---SDLGRVYGEVVSLVSDCQACHIVLAVPMKAL 513 (664)
T ss_pred HHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccC---CcHHHHHHHHHHHHccchhheeeeechHhhh
Confidence 8889988765432 22 22222222 223456666666632211 1111111 123333445677765554443
Q ss_pred Hhhh---CCcceEeCCCCChHHHHHHHHHH
Q 002362 319 ASMM---GSTNIISIKELTEEECRLLFNKI 345 (930)
Q Consensus 319 ~~~~---~~~~~~~l~~L~~~~~~~lf~~~ 345 (930)
.... .--..|.+.+++.++|.++-.+.
T Consensus 514 T~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 514 TPLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred chhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 2221 11457899999999998887664
No 483
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.11 E-value=0.088 Score=50.43 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHhch
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999999873
No 484
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.09 E-value=11 Score=41.21 Aligned_cols=55 Identities=24% Similarity=0.365 Sum_probs=35.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccH--HHHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEE--FRVAKAIVEALD 253 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~ 253 (930)
.+.||..+|.-|.||||.|-++++ ..++ ....+-+...+.+.+ -+-++.++++++
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~--~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~ 155 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAK--YLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVG 155 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHH--HHHH-cCCceEEEecccCChHHHHHHHHHHHHcC
Confidence 578999999999999999988887 3444 433333333333332 334556666654
No 485
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.09 E-value=0.78 Score=45.95 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHhch
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
-.+++|+|..|.|||||++.+..-
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 458999999999999999999774
No 486
>PRK06217 hypothetical protein; Validated
Probab=93.05 E-value=0.06 Score=52.91 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhch
Q 002362 199 IISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
.|.|.|.+|+||||+|+.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999863
No 487
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.04 E-value=0.34 Score=49.63 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=64.7
Q ss_pred ceecchhhHHHHHHHhccC-CCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 171 EICGRVDEKNELLSKLLCE-SSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 171 ~~vGr~~~~~~l~~~L~~~-~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.++|..-..+.|+..+.+- .++...++-+++.+|..|+||.-.++.++++..-.+-- ........
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~--------------S~~V~~fv 148 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLR--------------SPFVHHFV 148 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcccc--------------chhHHHhh
Confidence 4677766666666655431 11114678899999999999999999988752211100 00001111
Q ss_pred HHhcCCCCCCccH----HHHHHHHHHHh-cCceEEEEEeCccccCccChhhhhhhhc
Q 002362 250 EALDGHESRLGEF----QSLIKHIYESV-AGMCFLLVLDDVWDGNYMKWEPFFHCLK 301 (930)
Q Consensus 250 ~~l~~~~~~~~~~----~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 301 (930)
.... .+....+ +++...++..+ .-+|-|+|+|+++.....-.+.+...+.
T Consensus 149 at~h--FP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 149 ATLH--FPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred hhcc--CCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 1111 1111111 23444455444 3678899999998765544555655554
No 488
>PRK05922 type III secretion system ATPase; Validated
Probab=93.02 E-value=0.27 Score=54.43 Aligned_cols=86 Identities=17% Similarity=0.122 Sum_probs=49.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCC-CccHHHHHHHHHHHhcCCC-------CCCccH-----H
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSE-TFEEFRVAKAIVEALDGHE-------SRLGEF-----Q 263 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~-------~~~~~~-----~ 263 (930)
-..++|+|..|+|||||.+.+.... ..+..+++.+.+ ...+.+.+.+......... .+.... .
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 3468999999999999999998631 223344444433 2333445544443332211 111111 1
Q ss_pred HHHHHHHHHh--cCceEEEEEeCcc
Q 002362 264 SLIKHIYESV--AGMCFLLVLDDVW 286 (930)
Q Consensus 264 ~~~~~l~~~l--~~kr~LlVlDdv~ 286 (930)
...-.+.+++ +++++|+++||+-
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchh
Confidence 2233345555 5899999999993
No 489
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.01 E-value=0.069 Score=52.38 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
++++|+|+.|+||||||+.++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999987
No 490
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.00 E-value=0.065 Score=52.24 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999876
No 491
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.99 E-value=0.16 Score=54.23 Aligned_cols=46 Identities=28% Similarity=0.322 Sum_probs=29.9
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHH
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVA 245 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 245 (930)
+++.+.|.||+||||+|-..+-. ....=..+.-|+.....+..+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~--~A~~G~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALA--LARRGKRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--HHHTTS-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHH--HhhCCCCeeEeecCCCccHHHHh
Confidence 58899999999999999777653 33332346666555544444443
No 492
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.99 E-value=0.19 Score=50.74 Aligned_cols=39 Identities=36% Similarity=0.496 Sum_probs=29.1
Q ss_pred hHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhch
Q 002362 178 EKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 178 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
+..++++.+.... .+..+|+|.|++|+|||||.-.+...
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 4566777776543 25689999999999999999888774
No 493
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.96 E-value=0.68 Score=47.85 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=37.3
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHh
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEAL 252 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 252 (930)
.-.++.|.|.+|+|||++|..++.+.- ..+=..++|++... +..++...++...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~-~~~g~~vly~s~E~--~~~~~~~r~~~~~ 65 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIA-KKQGKPVLFFSLEM--SKEQLLQRLLASE 65 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCceEEEeCCC--CHHHHHHHHHHHh
Confidence 446899999999999999998876422 22234677777655 4566666665443
No 494
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.95 E-value=0.4 Score=51.39 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHhch
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
+..++.++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5689999999999999999999874
No 495
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.16 Score=50.00 Aligned_cols=52 Identities=25% Similarity=0.245 Sum_probs=36.8
Q ss_pred CCceecchhhHHHHHHHhccCCCC-------CCCCeEEEEEEecCCChHHHHHHHHhch
Q 002362 169 EEEICGRVDEKNELLSKLLCESSD-------SPKGLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
..++=|.+-.+++|.+...-+-.+ +-+.++-|.++|++|.|||.||+.|+|+
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 345667777777776665332211 1335677899999999999999999994
No 496
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.92 E-value=0.2 Score=54.49 Aligned_cols=113 Identities=17% Similarity=0.108 Sum_probs=65.2
Q ss_pred ceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHH
Q 002362 171 EICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVE 250 (930)
Q Consensus 171 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 250 (930)
.++|+++....+...+... +-+.+.|.+|+|||+||+.++. ... -..++|.+.......++.....-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~--~l~---~~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALAR--ALG---LPFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHH--HhC---CCeEEEecCCCCCHHHhcCchhH
Confidence 3888888888887777642 4589999999999999999987 222 34556777777666665443332
Q ss_pred HhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhc
Q 002362 251 ALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLK 301 (930)
Q Consensus 251 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 301 (930)
............. .. -....-+.++++|.++......-..+...+.
T Consensus 92 ~~~~~~~~~~~~~--~g---pl~~~~~~ill~DEInra~p~~q~aLl~~l~ 137 (329)
T COG0714 92 AALLLEPGEFRFV--PG---PLFAAVRVILLLDEINRAPPEVQNALLEALE 137 (329)
T ss_pred hhhhccCCeEEEe--cC---CcccccceEEEEeccccCCHHHHHHHHHHHh
Confidence 2210000000000 00 0001111588999998866444444444443
No 497
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.88 E-value=0.067 Score=29.27 Aligned_cols=16 Identities=50% Similarity=0.812 Sum_probs=5.9
Q ss_pred CCCeeeccCCcccccc
Q 002362 613 HLRYLNLSNQSIRKLP 628 (930)
Q Consensus 613 ~Lr~L~L~~~~i~~lp 628 (930)
+|+.|+|++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3455555555544443
No 498
>PLN02796 D-glycerate 3-kinase
Probab=92.88 E-value=0.77 Score=49.07 Aligned_cols=25 Identities=32% Similarity=0.230 Sum_probs=22.6
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhc
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...-+|+|.|..|.|||||++.+..
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3568999999999999999999887
No 499
>PRK13949 shikimate kinase; Provisional
Probab=92.84 E-value=0.069 Score=51.57 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
-|.|+|+.|+||||+++.++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998877
No 500
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.83 E-value=0.55 Score=50.27 Aligned_cols=49 Identities=27% Similarity=0.211 Sum_probs=31.5
Q ss_pred eEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHH
Q 002362 327 IISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAA 376 (930)
Q Consensus 327 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai 376 (930)
++++++++.+|+..++....-..--.. ...-+...+++.-..+|.|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~-~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRS-RVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcccc-CCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999887653222111 1122334566666678888543
Done!