Query 002362
Match_columns 930
No_of_seqs 560 out of 4477
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 23:15:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2E-49 6.8E-54 460.9 19.6 316 173-514 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.7E-39 5.8E-44 378.1 21.4 285 172-506 130-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.9E-37 6.4E-42 401.1 26.7 312 167-512 121-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 7.1E-34 2.4E-38 336.1 28.5 305 169-509 123-449 (591)
5 3rgz_A Protein brassinosteroid 100.0 8.4E-29 2.9E-33 301.1 14.0 361 529-928 294-767 (768)
6 3rgz_A Protein brassinosteroid 99.9 6.1E-26 2.1E-30 275.9 14.2 340 528-901 268-690 (768)
7 4eco_A Uncharacterized protein 99.9 7.4E-26 2.5E-30 268.6 14.0 324 528-901 205-597 (636)
8 4ecn_A Leucine-rich repeat pro 99.9 1.6E-25 5.5E-30 269.6 16.1 328 528-901 447-837 (876)
9 4ecn_A Leucine-rich repeat pro 99.9 2.8E-25 9.7E-30 267.5 15.9 321 544-901 440-816 (876)
10 4eco_A Uncharacterized protein 99.9 1.6E-25 5.4E-30 265.8 12.8 299 575-901 199-576 (636)
11 3vq2_A TLR4, TOLL-like recepto 99.9 6.4E-25 2.2E-29 260.9 16.3 132 527-671 30-165 (606)
12 2z7x_B TOLL-like receptor 1, v 99.9 3.8E-24 1.3E-28 249.1 21.8 126 528-671 20-150 (520)
13 4fmz_A Internalin; leucine ric 99.9 5.6E-24 1.9E-28 233.9 18.9 300 529-901 44-343 (347)
14 3j0a_A TOLL-like receptor 5; m 99.9 1.4E-23 4.6E-28 258.0 24.2 346 522-901 17-436 (844)
15 3t6q_A CD180 antigen; protein- 99.9 5.4E-24 1.8E-28 252.9 19.3 339 527-901 31-459 (606)
16 3v47_A TOLL-like receptor 5B a 99.9 1.9E-24 6.5E-29 247.3 12.9 357 521-901 22-405 (455)
17 3o6n_A APL1; leucine-rich repe 99.9 1.4E-23 4.8E-28 234.5 19.5 293 550-901 43-349 (390)
18 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.5E-23 1.2E-27 243.0 23.1 141 532-693 34-179 (562)
19 2z63_A TOLL-like receptor 4, v 99.9 4.9E-24 1.7E-28 251.5 15.5 146 527-685 26-175 (570)
20 1o6v_A Internalin A; bacterial 99.9 1.9E-23 6.5E-28 239.1 19.4 309 530-901 47-385 (466)
21 3oja_B Anopheles plasmodium-re 99.9 1.9E-23 6.4E-28 246.6 18.6 293 550-901 49-355 (597)
22 3bz5_A Internalin-J, INLJ; leu 99.9 4.9E-23 1.7E-27 233.6 21.1 301 529-902 42-350 (457)
23 2id5_A Lingo-1, leucine rich r 99.9 4.3E-23 1.5E-27 237.3 20.9 306 538-901 20-330 (477)
24 2z81_A CD282 antigen, TOLL-lik 99.9 9.4E-24 3.2E-28 247.7 15.0 343 527-901 24-507 (549)
25 3vq2_A TLR4, TOLL-like recepto 99.9 3.4E-23 1.2E-27 246.1 19.8 270 534-836 16-340 (606)
26 2z7x_B TOLL-like receptor 1, v 99.9 1.9E-23 6.6E-28 243.2 16.4 343 532-901 3-454 (520)
27 4fcg_A Uncharacterized protein 99.9 5E-23 1.7E-27 223.3 18.4 232 580-901 79-311 (328)
28 3j0a_A TOLL-like receptor 5; m 99.9 8.2E-23 2.8E-27 251.0 22.2 327 538-901 13-391 (844)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.7E-23 2.3E-27 240.6 19.1 319 550-901 29-483 (562)
30 1ziw_A TOLL-like receptor 3; i 99.9 7.1E-23 2.4E-27 246.7 18.3 155 527-695 23-183 (680)
31 3t6q_A CD180 antigen; protein- 99.9 1.2E-22 4.1E-27 241.3 19.1 268 607-901 273-557 (606)
32 1o6v_A Internalin A; bacterial 99.9 2E-22 6.8E-27 230.7 19.6 302 550-901 44-363 (466)
33 4fmz_A Internalin; leucine ric 99.9 1.6E-22 5.3E-27 222.4 16.8 258 527-835 64-322 (347)
34 2z63_A TOLL-like receptor 4, v 99.9 5.1E-23 1.7E-27 242.8 13.6 347 528-901 51-528 (570)
35 3v47_A TOLL-like receptor 5B a 99.9 1.3E-22 4.4E-27 232.0 15.1 330 538-901 19-381 (455)
36 3o6n_A APL1; leucine-rich repe 99.9 1.2E-22 4E-27 227.1 12.8 296 528-878 44-350 (390)
37 2z81_A CD282 antigen, TOLL-lik 99.9 3.7E-22 1.3E-26 234.2 14.8 318 528-879 49-509 (549)
38 2id5_A Lingo-1, leucine rich r 99.9 6E-22 2.1E-26 227.8 15.9 296 527-864 30-330 (477)
39 1ziw_A TOLL-like receptor 3; i 99.9 7.9E-22 2.7E-26 237.6 17.2 260 537-833 12-305 (680)
40 3oja_B Anopheles plasmodium-re 99.9 2E-22 6.8E-27 237.8 11.6 296 529-879 51-357 (597)
41 1ogq_A PGIP-2, polygalacturona 99.9 1.3E-22 4.3E-27 218.8 9.1 229 578-836 72-303 (313)
42 3bz5_A Internalin-J, INLJ; leu 99.9 1.9E-21 6.7E-26 220.4 18.9 229 545-833 35-263 (457)
43 2ft3_A Biglycan; proteoglycan, 99.8 5.2E-21 1.8E-25 208.5 15.5 291 553-901 34-330 (332)
44 1xku_A Decorin; proteoglycan, 99.8 5.7E-21 2E-25 208.1 15.4 294 553-901 32-329 (330)
45 1ogq_A PGIP-2, polygalacturona 99.8 9.2E-22 3.1E-26 212.1 8.6 255 582-884 50-308 (313)
46 2ft3_A Biglycan; proteoglycan, 99.8 5.1E-20 1.8E-24 200.6 18.8 261 530-835 34-305 (332)
47 4fcg_A Uncharacterized protein 99.8 1E-20 3.5E-25 205.0 12.1 221 551-833 80-310 (328)
48 1jl5_A Outer protein YOPM; leu 99.8 1.7E-19 5.6E-24 204.4 20.6 296 526-901 88-406 (454)
49 4g8a_A TOLL-like receptor 4; l 99.8 5.6E-20 1.9E-24 219.8 17.1 355 527-901 50-577 (635)
50 1jl5_A Outer protein YOPM; leu 99.8 4.7E-20 1.6E-24 208.8 15.0 44 854-901 317-367 (454)
51 1xku_A Decorin; proteoglycan, 99.8 7.5E-20 2.6E-24 199.2 15.1 262 531-835 33-304 (330)
52 2z80_A TOLL-like receptor 2, v 99.8 1.5E-19 5.2E-24 198.7 12.6 249 582-901 52-311 (353)
53 3g06_A SSPH2 (leucine-rich rep 99.8 1.8E-18 6.2E-23 201.7 19.8 237 601-902 52-295 (622)
54 2z66_A Variable lymphocyte rec 99.8 3.7E-19 1.3E-23 191.5 11.5 227 552-835 28-259 (306)
55 2z66_A Variable lymphocyte rec 99.8 1.3E-18 4.4E-23 187.2 13.1 234 600-901 18-258 (306)
56 4g8a_A TOLL-like receptor 4; l 99.8 3.7E-18 1.3E-22 204.1 17.4 139 541-695 43-185 (635)
57 3o53_A Protein LRIM1, AGAP0063 99.8 1.2E-19 4.2E-24 196.0 3.0 224 572-835 24-248 (317)
58 3zyi_A Leucine-rich repeat-con 99.8 3.7E-18 1.3E-22 194.4 14.7 221 582-834 75-300 (452)
59 3zyj_A Leucine-rich repeat-con 99.7 6.8E-18 2.3E-22 191.4 15.3 222 582-835 64-290 (440)
60 3zyi_A Leucine-rich repeat-con 99.7 4.7E-18 1.6E-22 193.4 12.9 241 533-813 58-302 (452)
61 3zyj_A Leucine-rich repeat-con 99.7 5.6E-18 1.9E-22 192.1 13.2 241 533-813 47-291 (440)
62 2z80_A TOLL-like receptor 2, v 99.7 3.9E-18 1.3E-22 187.5 11.4 262 538-835 40-312 (353)
63 1z7x_W Ribonuclease inhibitor; 99.7 2.5E-20 8.6E-25 213.4 -7.1 349 528-901 2-408 (461)
64 3g06_A SSPH2 (leucine-rich rep 99.7 6.4E-17 2.2E-21 188.7 19.5 254 530-864 41-294 (622)
65 1ozn_A Reticulon 4 receptor; N 99.7 5.9E-18 2E-22 180.0 9.8 62 773-834 173-235 (285)
66 3oja_A Leucine-rich immune mol 99.7 7.9E-18 2.7E-22 192.5 11.0 76 581-669 33-109 (487)
67 1ozn_A Reticulon 4 receptor; N 99.7 2.8E-17 9.6E-22 174.7 14.1 85 607-691 51-137 (285)
68 3oja_A Leucine-rich immune mol 99.7 1.3E-17 4.3E-22 190.8 11.3 216 550-835 32-248 (487)
69 1wwl_A Monocyte differentiatio 99.7 2.4E-18 8.4E-23 185.3 4.6 248 579-901 40-306 (312)
70 1z7x_W Ribonuclease inhibitor; 99.7 6.6E-20 2.3E-24 209.9 -9.4 351 529-900 28-436 (461)
71 3ogk_B Coronatine-insensitive 99.7 1.5E-18 5.1E-23 205.5 -1.8 321 550-900 162-522 (592)
72 3o53_A Protein LRIM1, AGAP0063 99.7 2.9E-18 9.8E-23 185.2 0.6 242 548-836 30-274 (317)
73 3ogk_B Coronatine-insensitive 99.7 3E-18 1E-22 202.8 0.8 344 529-903 112-499 (592)
74 1wwl_A Monocyte differentiatio 99.7 7.6E-17 2.6E-21 173.6 8.9 226 584-835 65-307 (312)
75 1h6u_A Internalin H; cell adhe 99.7 4E-16 1.4E-20 167.4 13.0 190 580-835 39-228 (308)
76 2z62_A TOLL-like receptor 4, v 99.6 4E-16 1.4E-20 164.9 12.3 197 583-834 29-234 (276)
77 2xwt_C Thyrotropin receptor; s 99.6 2.2E-15 7.4E-20 155.5 16.5 203 601-900 23-235 (239)
78 3qfl_A MLA10; coiled-coil, (CC 99.6 3.8E-16 1.3E-20 137.7 8.3 81 4-88 1-83 (115)
79 1w5s_A Origin recognition comp 99.6 7E-15 2.4E-19 165.3 20.7 300 169-485 21-372 (412)
80 2o6q_A Variable lymphocyte rec 99.6 3.4E-15 1.2E-19 157.0 16.9 196 583-835 17-216 (270)
81 2qen_A Walker-type ATPase; unk 99.6 2E-14 7E-19 157.6 23.2 293 168-506 10-349 (350)
82 3rfs_A Internalin B, repeat mo 99.6 2.6E-15 8.7E-20 158.1 15.3 62 773-834 153-215 (272)
83 1p9a_G Platelet glycoprotein I 99.6 1.6E-15 5.5E-20 160.9 13.8 62 606-669 49-110 (290)
84 2p1m_B Transport inhibitor res 99.6 3.8E-17 1.3E-21 193.5 1.1 352 529-904 105-518 (594)
85 1p9a_G Platelet glycoprotein I 99.6 2.7E-15 9.1E-20 159.2 14.4 199 578-835 6-206 (290)
86 2z62_A TOLL-like receptor 4, v 99.6 1.4E-15 4.7E-20 160.8 11.8 206 552-816 28-239 (276)
87 2p1m_B Transport inhibitor res 99.6 1.2E-17 4.2E-22 197.7 -6.2 327 549-904 102-493 (594)
88 4ay9_X Follicle-stimulating ho 99.6 4.6E-15 1.6E-19 162.4 14.1 230 600-901 20-256 (350)
89 2ast_B S-phase kinase-associat 99.6 2.3E-16 8E-21 172.1 3.2 203 582-834 70-282 (336)
90 2fna_A Conserved hypothetical 99.6 2.8E-13 9.4E-18 149.0 27.2 291 168-505 11-356 (357)
91 4glp_A Monocyte differentiatio 99.6 1.2E-14 4E-19 156.3 15.6 229 551-835 63-305 (310)
92 3rfs_A Internalin B, repeat mo 99.6 2.3E-15 7.9E-20 158.4 9.6 206 549-825 38-247 (272)
93 1h6u_A Internalin H; cell adhe 99.6 5.9E-15 2E-19 158.2 11.7 192 550-814 39-230 (308)
94 2o6q_A Variable lymphocyte rec 99.6 3.2E-14 1.1E-18 149.5 16.1 197 612-864 16-215 (270)
95 2ca6_A RAN GTPase-activating p 99.6 1.3E-16 4.4E-21 177.7 -2.5 249 544-835 24-314 (386)
96 2ast_B S-phase kinase-associat 99.6 5.5E-16 1.9E-20 169.2 2.5 239 582-877 47-303 (336)
97 2xwt_C Thyrotropin receptor; s 99.5 1.8E-14 6E-19 148.6 10.1 194 583-834 32-236 (239)
98 2ca6_A RAN GTPase-activating p 99.5 2E-16 6.9E-21 176.1 -6.8 244 575-864 25-313 (386)
99 4glp_A Monocyte differentiatio 99.5 8.1E-14 2.8E-18 149.8 9.8 207 582-834 64-282 (310)
100 2v1u_A Cell division control p 99.5 1.2E-11 4E-16 137.6 27.6 294 169-485 18-352 (387)
101 2qby_B CDC6 homolog 3, cell di 99.5 1.5E-11 5.1E-16 136.6 28.4 294 169-486 19-341 (384)
102 1m9s_A Internalin B; cell inva 99.5 8.4E-14 2.9E-18 162.2 9.6 172 609-815 40-211 (605)
103 1h6t_A Internalin B; cell adhe 99.4 6.8E-14 2.3E-18 148.5 7.8 80 579-669 43-122 (291)
104 3cvr_A Invasion plasmid antige 99.4 1.5E-13 5.2E-18 158.1 10.4 93 582-694 59-151 (571)
105 3goz_A Leucine-rich repeat-con 99.4 2.6E-15 9E-20 165.2 -4.7 215 574-834 14-263 (362)
106 1h6t_A Internalin B; cell adhe 99.4 2.7E-13 9.2E-18 143.9 10.5 102 549-669 43-144 (291)
107 4ay9_X Follicle-stimulating ho 99.4 5E-13 1.7E-17 146.2 12.3 79 740-833 175-255 (350)
108 3m19_A Variable lymphocyte rec 99.4 4.7E-13 1.6E-17 138.9 11.4 179 582-816 14-194 (251)
109 3m19_A Variable lymphocyte rec 99.4 9E-13 3.1E-17 136.8 13.5 176 612-835 14-190 (251)
110 1fnn_A CDC6P, cell division co 99.4 4.7E-11 1.6E-15 132.8 28.3 320 170-511 17-386 (389)
111 1m9s_A Internalin B; cell inva 99.4 3.5E-13 1.2E-17 157.0 9.5 188 612-835 21-208 (605)
112 3goz_A Leucine-rich repeat-con 99.4 1E-14 3.5E-19 160.5 -4.3 241 548-835 18-295 (362)
113 3cvr_A Invasion plasmid antige 99.4 6.6E-13 2.3E-17 152.8 9.4 174 613-835 60-241 (571)
114 4ezg_A Putative uncharacterize 99.3 3.5E-12 1.2E-16 126.8 11.5 147 529-693 44-191 (197)
115 1dce_A Protein (RAB geranylger 99.3 6.5E-15 2.2E-19 170.6 -9.8 218 609-898 346-567 (567)
116 4ezg_A Putative uncharacterize 99.3 1.3E-12 4.5E-17 129.9 7.6 125 549-690 41-166 (197)
117 1xeu_A Internalin C; cellular 99.3 8E-13 2.7E-17 137.9 6.0 79 580-669 17-95 (263)
118 1dce_A Protein (RAB geranylger 99.3 2.1E-14 7.3E-19 166.2 -6.9 56 579-641 346-415 (567)
119 2qby_A CDC6 homolog 1, cell di 99.3 4.8E-11 1.6E-15 132.6 20.3 294 169-484 19-348 (386)
120 2o6s_A Variable lymphocyte rec 99.3 3.3E-12 1.1E-16 128.3 9.4 86 601-690 19-107 (208)
121 1xeu_A Internalin C; cellular 99.3 8.6E-13 2.9E-17 137.6 4.9 120 550-691 17-136 (263)
122 4b8c_D Glucose-repressible alc 99.3 1.1E-12 3.7E-17 156.9 5.5 157 529-696 173-329 (727)
123 1njg_A DNA polymerase III subu 99.3 6E-11 2E-15 122.6 17.1 197 170-383 23-231 (250)
124 2v9t_B SLIT homolog 2 protein 99.3 2E-11 6.9E-16 123.5 12.9 68 600-669 22-90 (220)
125 2o6s_A Variable lymphocyte rec 99.3 3.1E-11 1E-15 121.2 13.1 72 614-689 9-82 (208)
126 3e6j_A Variable lymphocyte rec 99.2 5.9E-11 2E-15 120.9 13.9 59 775-834 110-169 (229)
127 2v9t_B SLIT homolog 2 protein 99.2 1.6E-11 5.5E-16 124.2 9.2 139 539-693 21-162 (220)
128 3e6j_A Variable lymphocyte rec 99.2 2.6E-11 9E-16 123.5 9.5 143 534-693 24-169 (229)
129 2v70_A SLIT-2, SLIT homolog 2 99.2 3.1E-11 1.1E-15 122.0 9.0 147 533-693 15-163 (220)
130 4b8c_D Glucose-repressible alc 99.2 2.2E-12 7.5E-17 154.3 0.2 118 601-725 213-330 (727)
131 2chg_A Replication factor C sm 99.2 4.8E-10 1.6E-14 113.9 17.6 184 170-380 17-204 (226)
132 2xot_A Amphoterin-induced prot 99.2 3.6E-11 1.2E-15 131.9 9.3 87 600-690 29-119 (361)
133 2ell_A Acidic leucine-rich nuc 99.2 2.5E-11 8.7E-16 117.2 6.7 106 578-693 45-157 (168)
134 2ell_A Acidic leucine-rich nuc 99.1 6.1E-11 2.1E-15 114.4 8.5 135 527-678 22-165 (168)
135 1a9n_A U2A', U2A'; complex (nu 99.1 7.4E-11 2.5E-15 114.8 8.8 131 547-694 14-151 (176)
136 2je0_A Acidic leucine-rich nuc 99.1 2.3E-11 7.9E-16 114.8 4.5 125 551-690 16-147 (149)
137 2xot_A Amphoterin-induced prot 99.1 8.1E-11 2.8E-15 129.1 8.3 170 614-835 20-200 (361)
138 2v70_A SLIT-2, SLIT homolog 2 99.1 2.2E-10 7.6E-15 115.7 10.0 81 608-689 53-135 (220)
139 2je0_A Acidic leucine-rich nuc 99.1 9.9E-11 3.4E-15 110.4 6.1 125 527-667 15-148 (149)
140 1a9n_A U2A', U2A'; complex (nu 99.0 2.2E-10 7.6E-15 111.4 6.3 106 578-694 15-124 (176)
141 3sb4_A Hypothetical leucine ri 99.0 1E-09 3.4E-14 118.7 11.4 290 551-898 24-328 (329)
142 1sxj_B Activator 1 37 kDa subu 99.0 3.5E-09 1.2E-13 114.2 15.6 186 170-381 21-211 (323)
143 1hqc_A RUVB; extended AAA-ATPa 99.0 2.9E-09 9.9E-14 114.9 14.7 275 170-483 12-324 (324)
144 1ds9_A Outer arm dynein; leuci 99.0 3.5E-12 1.2E-16 127.0 -8.7 87 601-691 37-123 (198)
145 1w8a_A SLIT protein; signaling 98.9 1.1E-09 3.9E-14 107.9 8.4 83 608-690 50-133 (192)
146 1w8a_A SLIT protein; signaling 98.9 1.2E-09 4E-14 107.9 7.5 125 532-670 11-137 (192)
147 2wfh_A SLIT homolog 2 protein 98.9 3.4E-09 1.2E-13 104.5 9.6 100 582-690 31-133 (193)
148 3te6_A Regulatory protein SIR3 98.9 2.9E-08 1E-12 104.1 17.0 208 171-383 21-283 (318)
149 2wfh_A SLIT homolog 2 protein 98.9 4.5E-09 1.5E-13 103.6 9.3 116 538-670 19-137 (193)
150 1ds9_A Outer arm dynein; leuci 98.9 4.5E-11 1.5E-15 118.8 -5.6 105 577-692 43-149 (198)
151 1iqp_A RFCS; clamp loader, ext 98.9 2.6E-08 8.7E-13 107.6 15.5 182 170-381 25-213 (327)
152 2o6r_A Variable lymphocyte rec 98.8 7.6E-09 2.6E-13 100.5 9.0 61 608-669 72-134 (177)
153 2r9u_A Variable lymphocyte rec 98.8 1.1E-08 3.9E-13 98.7 8.4 86 601-690 24-112 (174)
154 3g39_A Variable lymphocyte rec 98.7 1.8E-08 6.3E-13 96.9 8.2 99 584-693 11-112 (170)
155 1jr3_A DNA polymerase III subu 98.7 2E-07 6.8E-12 102.6 15.1 195 170-380 16-221 (373)
156 2o6r_A Variable lymphocyte rec 98.6 5.7E-08 1.9E-12 94.3 8.9 103 582-693 28-134 (177)
157 2chq_A Replication factor C sm 98.6 2.8E-07 9.7E-12 98.9 14.9 181 170-379 17-203 (319)
158 2r9u_A Variable lymphocyte rec 98.6 3.9E-08 1.3E-12 94.9 6.9 87 582-677 33-122 (174)
159 1jbk_A CLPB protein; beta barr 98.6 3.5E-07 1.2E-11 90.0 12.9 149 170-342 22-194 (195)
160 3sb4_A Hypothetical leucine ri 98.6 4.9E-08 1.7E-12 105.3 6.6 285 529-860 25-327 (329)
161 3bos_A Putative DNA replicatio 98.5 2.7E-07 9.2E-12 94.6 10.8 174 170-380 28-217 (242)
162 4fdw_A Leucine rich hypothetic 98.5 3.9E-06 1.3E-10 92.5 19.5 107 772-902 266-381 (401)
163 3g39_A Variable lymphocyte rec 98.5 2.2E-07 7.6E-12 89.3 8.1 81 582-670 30-113 (170)
164 1sxj_D Activator 1 41 kDa subu 98.4 3.4E-06 1.2E-10 91.9 17.1 194 170-379 37-234 (353)
165 4fdw_A Leucine rich hypothetic 98.4 1.4E-06 4.8E-11 96.1 13.9 88 737-834 266-355 (401)
166 2ra8_A Uncharacterized protein 98.4 5.1E-08 1.7E-12 105.5 1.4 127 771-902 166-318 (362)
167 3pfi_A Holliday junction ATP-d 98.4 6.1E-06 2.1E-10 89.2 17.8 177 170-379 29-226 (338)
168 2z4s_A Chromosomal replication 98.4 4.2E-06 1.4E-10 93.3 16.5 181 197-398 130-331 (440)
169 2ifg_A High affinity nerve gro 98.4 5.8E-07 2E-11 97.8 8.3 87 602-691 22-111 (347)
170 3h4m_A Proteasome-activating n 98.3 8.7E-06 3E-10 85.6 17.0 184 169-378 16-229 (285)
171 1sxj_E Activator 1 40 kDa subu 98.3 6.2E-06 2.1E-10 89.8 14.6 195 170-380 14-237 (354)
172 4fs7_A Uncharacterized protein 98.3 1.6E-05 5.6E-10 87.8 18.0 302 546-905 65-380 (394)
173 3uk6_A RUVB-like 2; hexameric 98.3 1.6E-05 5.6E-10 87.0 17.6 194 170-378 44-301 (368)
174 3pvs_A Replication-associated 98.3 8.2E-06 2.8E-10 90.7 15.2 173 170-378 26-213 (447)
175 3syl_A Protein CBBX; photosynt 98.2 1.7E-05 5.7E-10 84.5 16.3 162 171-348 32-219 (309)
176 1sxj_A Activator 1 95 kDa subu 98.2 6.9E-06 2.4E-10 93.9 13.8 197 170-380 39-253 (516)
177 2qz4_A Paraplegin; AAA+, SPG7, 98.2 1.8E-05 6.1E-10 82.0 15.9 187 170-379 6-221 (262)
178 4fs7_A Uncharacterized protein 98.2 1.4E-05 4.9E-10 88.3 15.4 305 530-896 72-393 (394)
179 1a5t_A Delta prime, HOLB; zinc 98.2 2.2E-05 7.7E-10 84.2 15.7 170 176-379 8-204 (334)
180 1l8q_A Chromosomal replication 98.2 1.7E-05 5.7E-10 85.1 14.6 156 196-375 36-203 (324)
181 3u61_B DNA polymerase accessor 98.1 1.9E-05 6.5E-10 84.7 14.1 177 170-376 26-212 (324)
182 1d2n_A N-ethylmaleimide-sensit 98.1 2.7E-05 9.1E-10 81.1 14.4 170 171-371 34-228 (272)
183 2p65_A Hypothetical protein PF 98.1 6.2E-06 2.1E-10 80.3 8.6 45 170-220 22-66 (187)
184 2ifg_A High affinity nerve gro 98.1 4.2E-06 1.4E-10 90.9 7.9 84 578-669 27-113 (347)
185 3un9_A NLR family member X1; l 98.1 2E-07 6.9E-12 101.8 -3.0 59 611-669 125-193 (372)
186 3eie_A Vacuolar protein sortin 98.1 9.4E-05 3.2E-09 79.0 17.8 184 170-380 18-228 (322)
187 1sxj_C Activator 1 40 kDa subu 98.0 3.7E-05 1.3E-09 82.9 14.0 181 170-377 25-209 (340)
188 2ra8_A Uncharacterized protein 98.0 8.9E-07 3.1E-11 95.7 1.2 65 578-646 135-204 (362)
189 3n70_A Transport activator; si 98.0 6E-06 2E-10 76.7 6.1 114 171-315 2-115 (145)
190 2qp9_X Vacuolar protein sortin 98.0 0.00015 5.1E-09 78.4 17.9 184 170-380 51-261 (355)
191 1xwi_A SKD1 protein; VPS4B, AA 98.0 0.00023 7.8E-09 75.8 19.1 186 170-381 12-224 (322)
192 3rw6_A Nuclear RNA export fact 98.0 4.4E-06 1.5E-10 85.4 4.8 86 575-665 163-257 (267)
193 3d8b_A Fidgetin-like protein 1 98.0 8.7E-05 3E-09 80.4 15.5 187 170-381 84-296 (357)
194 2w58_A DNAI, primosome compone 98.0 1.8E-05 6.1E-10 78.3 9.0 120 177-316 36-159 (202)
195 3b9p_A CG5977-PA, isoform A; A 97.9 0.00023 7.8E-09 75.1 17.9 183 170-379 21-232 (297)
196 3ec2_A DNA replication protein 97.9 2.2E-05 7.6E-10 75.9 9.0 122 175-316 19-143 (180)
197 3un9_A NLR family member X1; l 97.9 1.9E-06 6.5E-11 94.0 1.3 40 607-646 178-222 (372)
198 3e4g_A ATP synthase subunit S, 97.9 2.3E-06 7.8E-11 80.9 0.3 91 801-907 61-154 (176)
199 2gno_A DNA polymerase III, gam 97.8 8.8E-05 3E-09 77.9 11.8 149 174-346 1-152 (305)
200 2zan_A Vacuolar protein sortin 97.8 0.00049 1.7E-08 76.8 18.1 188 170-380 134-345 (444)
201 1qvr_A CLPB protein; coiled co 97.8 8.7E-05 3E-09 90.3 13.0 152 170-345 170-344 (854)
202 3cf0_A Transitional endoplasmi 97.8 0.0003 1E-08 74.1 15.4 158 170-347 15-200 (301)
203 3co5_A Putative two-component 97.8 1.5E-05 5.2E-10 73.7 4.2 110 171-315 5-115 (143)
204 3e4g_A ATP synthase subunit S, 97.7 5E-06 1.7E-10 78.6 0.7 89 776-882 60-154 (176)
205 4fcw_A Chaperone protein CLPB; 97.7 0.00016 5.4E-09 76.9 12.5 136 171-315 18-169 (311)
206 4gt6_A Cell surface protein; l 97.7 0.00065 2.2E-08 74.8 17.5 110 546-669 57-170 (394)
207 4b4t_J 26S protease regulatory 97.7 0.00046 1.6E-08 74.2 15.4 179 169-373 147-354 (405)
208 3vfd_A Spastin; ATPase, microt 97.7 0.00077 2.6E-08 73.9 17.7 187 169-380 114-326 (389)
209 3hu3_A Transitional endoplasmi 97.7 0.00026 8.9E-09 79.4 14.0 185 170-379 204-414 (489)
210 1in4_A RUVB, holliday junction 97.7 0.0013 4.6E-08 70.3 19.1 177 170-379 25-222 (334)
211 3pxg_A Negative regulator of g 97.7 0.00027 9.2E-09 79.4 14.1 145 170-346 180-338 (468)
212 1io0_A Tropomodulin; LRR prote 97.7 2.4E-05 8.3E-10 76.0 4.4 119 547-669 31-161 (185)
213 2kjq_A DNAA-related protein; s 97.6 4.8E-05 1.7E-09 70.6 5.6 86 198-315 37-124 (149)
214 2bjv_A PSP operon transcriptio 97.6 0.00013 4.6E-09 75.4 9.0 47 170-220 6-52 (265)
215 4b4t_L 26S protease subunit RP 97.6 0.00063 2.2E-08 74.4 14.3 179 169-373 180-387 (437)
216 1ofh_A ATP-dependent HSL prote 97.6 0.00087 3E-08 71.0 15.1 153 170-344 15-213 (310)
217 1lv7_A FTSH; alpha/beta domain 97.5 0.00091 3.1E-08 68.7 14.5 183 170-377 12-222 (257)
218 4b4t_K 26S protease regulatory 97.5 0.0005 1.7E-08 75.0 12.6 179 168-372 170-378 (428)
219 4b4t_H 26S protease regulatory 97.5 0.0018 6.2E-08 70.5 16.8 177 170-372 209-414 (467)
220 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00061 2.1E-08 82.0 14.6 153 170-346 186-362 (758)
221 1io0_A Tropomodulin; LRR prote 97.5 1.5E-05 5.3E-10 77.4 0.4 119 571-691 25-159 (185)
222 2c9o_A RUVB-like 1; hexameric 97.5 0.00042 1.4E-08 77.7 12.1 96 279-379 298-409 (456)
223 4gt6_A Cell surface protein; l 97.5 0.0011 3.9E-08 72.9 15.4 141 531-687 66-209 (394)
224 3pxi_A Negative regulator of g 97.5 0.00015 5.2E-09 87.1 8.9 155 170-345 491-674 (758)
225 1ojl_A Transcriptional regulat 97.5 0.00019 6.5E-09 75.6 8.3 46 170-219 2-47 (304)
226 3rw6_A Nuclear RNA export fact 97.4 8.3E-05 2.8E-09 75.9 3.9 81 609-691 167-259 (267)
227 4b4t_M 26S protease regulatory 97.4 0.00062 2.1E-08 74.4 10.7 178 169-372 180-386 (434)
228 2ce7_A Cell division protein F 97.3 0.0017 5.9E-08 72.1 14.3 179 170-373 16-221 (476)
229 4b4t_I 26S protease regulatory 97.3 0.0019 6.5E-08 69.6 14.0 178 169-372 181-387 (437)
230 3pxi_A Negative regulator of g 97.3 0.0015 5.1E-08 78.5 14.5 146 170-346 180-338 (758)
231 2r62_A Cell division protease 97.3 0.0002 6.9E-09 74.2 5.4 157 170-346 11-196 (268)
232 3t15_A Ribulose bisphosphate c 97.2 0.0017 5.8E-08 67.9 11.7 26 195-220 34-59 (293)
233 2r44_A Uncharacterized protein 97.1 0.0031 1.1E-07 67.4 13.3 153 170-348 27-200 (331)
234 2qgz_A Helicase loader, putati 97.1 0.0006 2E-08 71.9 6.4 119 176-315 134-257 (308)
235 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0014 4.8E-08 78.8 10.5 135 170-315 458-607 (758)
236 3m6a_A ATP-dependent protease 96.9 0.0037 1.3E-07 71.4 12.0 162 170-346 81-266 (543)
237 1qvr_A CLPB protein; coiled co 96.9 0.0021 7.3E-08 78.1 10.5 136 171-315 559-710 (854)
238 3cf2_A TER ATPase, transitiona 96.9 0.0043 1.5E-07 73.2 12.3 180 169-373 203-407 (806)
239 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.0006 2E-08 70.6 4.2 69 197-287 123-193 (331)
240 1jr3_D DNA polymerase III, del 96.7 0.027 9.2E-07 60.3 16.4 157 196-378 17-183 (343)
241 4h09_A Hypothetical leucine ri 96.7 0.015 5.1E-07 63.4 14.3 33 798-831 283-317 (379)
242 4h09_A Hypothetical leucine ri 96.6 0.023 8E-07 61.8 15.3 81 773-862 236-318 (379)
243 2cvh_A DNA repair and recombin 96.6 0.0083 2.8E-07 59.7 10.7 86 196-287 19-116 (220)
244 1um8_A ATP-dependent CLP prote 96.5 0.026 9E-07 61.3 14.8 49 171-219 22-94 (376)
245 1ixz_A ATP-dependent metallopr 96.5 0.018 6E-07 58.8 12.4 156 170-346 16-199 (254)
246 1g5t_A COB(I)alamin adenosyltr 96.4 0.0049 1.7E-07 58.9 7.0 118 197-316 28-163 (196)
247 2x8a_A Nuclear valosin-contain 96.3 0.026 8.8E-07 58.1 12.5 126 200-346 47-191 (274)
248 1iy2_A ATP-dependent metallopr 96.3 0.041 1.4E-06 56.9 14.0 178 169-373 39-245 (278)
249 2dhr_A FTSH; AAA+ protein, hex 96.3 0.03 1E-06 62.6 13.6 176 169-373 30-236 (499)
250 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.013 4.6E-07 58.7 10.0 115 197-316 23-168 (235)
251 1ypw_A Transitional endoplasmi 96.3 0.0073 2.5E-07 72.4 8.9 158 168-346 202-385 (806)
252 1n0w_A DNA repair protein RAD5 96.3 0.0082 2.8E-07 60.8 8.1 91 196-287 23-130 (243)
253 1g8p_A Magnesium-chelatase 38 96.2 0.008 2.7E-07 64.7 8.4 44 170-219 24-67 (350)
254 2b8t_A Thymidine kinase; deoxy 96.1 0.0047 1.6E-07 61.0 5.3 114 196-317 11-127 (223)
255 3hr8_A Protein RECA; alpha and 96.1 0.018 6.1E-07 61.3 9.9 85 196-287 60-150 (356)
256 1ye8_A Protein THEP1, hypothet 95.9 0.023 7.8E-07 54.2 9.0 22 199-220 2-23 (178)
257 3io5_A Recombination and repai 95.9 0.033 1.1E-06 57.4 10.3 82 199-287 30-122 (333)
258 1xp8_A RECA protein, recombina 95.9 0.024 8.3E-07 60.7 9.9 85 196-287 73-163 (366)
259 2zr9_A Protein RECA, recombina 95.8 0.024 8.3E-07 60.5 9.5 85 196-287 60-150 (349)
260 1v5w_A DMC1, meiotic recombina 95.8 0.034 1.2E-06 59.3 10.4 57 196-253 121-181 (343)
261 2z43_A DNA repair and recombin 95.7 0.026 8.9E-07 59.8 9.3 57 196-253 106-166 (324)
262 2i1q_A DNA repair and recombin 95.7 0.021 7E-07 60.6 8.4 57 196-253 97-167 (322)
263 3ice_A Transcription terminati 95.6 0.013 4.4E-07 61.9 6.1 97 180-286 162-271 (422)
264 2ehv_A Hypothetical protein PH 95.5 0.031 1.1E-06 56.7 8.6 41 196-237 29-69 (251)
265 1u94_A RECA protein, recombina 95.4 0.037 1.3E-06 59.1 9.0 84 196-286 62-151 (356)
266 1rz3_A Hypothetical protein rb 95.3 0.017 5.7E-07 56.5 5.5 42 175-219 3-44 (201)
267 1cr0_A DNA primase/helicase; R 95.3 0.051 1.8E-06 56.7 9.6 38 197-236 35-73 (296)
268 3tqc_A Pantothenate kinase; bi 95.1 0.047 1.6E-06 57.2 8.4 101 172-276 69-171 (321)
269 2px0_A Flagellar biosynthesis 95.1 0.056 1.9E-06 56.2 8.9 86 196-285 104-191 (296)
270 2pze_A Cystic fibrosis transme 95.0 0.13 4.5E-06 51.1 11.1 22 198-219 35-56 (229)
271 1odf_A YGR205W, hypothetical 3 94.9 0.12 4.2E-06 53.3 11.0 81 195-275 29-117 (290)
272 2cbz_A Multidrug resistance-as 94.9 0.076 2.6E-06 53.2 9.0 22 198-219 32-53 (237)
273 1sky_E F1-ATPase, F1-ATP synth 94.7 0.072 2.5E-06 58.3 8.9 87 199-286 153-255 (473)
274 1mv5_A LMRA, multidrug resista 94.7 0.16 5.5E-06 51.0 11.0 23 197-219 28-50 (243)
275 3c8u_A Fructokinase; YP_612366 94.6 0.026 8.9E-07 55.5 4.6 38 178-219 7-44 (208)
276 3cf2_A TER ATPase, transitiona 94.5 0.059 2E-06 63.5 7.9 158 168-346 475-661 (806)
277 1vma_A Cell division protein F 94.4 0.2 6.8E-06 52.1 11.0 88 196-286 103-196 (306)
278 1pzn_A RAD51, DNA repair and r 94.3 0.12 4.2E-06 55.1 9.5 48 196-243 130-181 (349)
279 2orw_A Thymidine kinase; TMTK, 94.3 0.0096 3.3E-07 57.2 0.7 108 198-316 4-113 (184)
280 4a74_A DNA repair and recombin 94.2 0.13 4.3E-06 51.3 9.0 46 196-241 24-73 (231)
281 3nbx_X ATPase RAVA; AAA+ ATPas 94.2 0.027 9.2E-07 63.0 4.2 41 171-219 23-63 (500)
282 3lda_A DNA repair protein RAD5 94.2 0.11 3.6E-06 56.4 8.7 57 196-253 177-237 (400)
283 1qhx_A CPT, protein (chloramph 94.2 0.02 6.8E-07 54.7 2.6 22 198-219 4-25 (178)
284 3lw7_A Adenylate kinase relate 94.1 0.022 7.5E-07 54.1 2.9 20 198-217 2-21 (179)
285 4a1f_A DNAB helicase, replicat 94.1 0.16 5.6E-06 53.4 9.7 52 197-252 46-97 (338)
286 1zp6_A Hypothetical protein AT 94.1 0.027 9.4E-07 54.4 3.6 24 196-219 8-31 (191)
287 1gvn_B Zeta; postsegregational 94.1 0.042 1.4E-06 56.9 5.1 41 178-219 15-55 (287)
288 3dm5_A SRP54, signal recogniti 94.1 0.48 1.6E-05 51.7 13.5 24 196-219 99-122 (443)
289 2pjz_A Hypothetical protein ST 94.0 0.18 6.2E-06 51.2 9.5 22 198-219 31-52 (263)
290 2ffh_A Protein (FFH); SRP54, s 93.9 0.21 7.2E-06 54.4 10.4 37 197-235 98-134 (425)
291 2ga8_A Hypothetical 39.9 kDa p 93.9 0.046 1.6E-06 57.5 5.0 46 173-220 2-47 (359)
292 3bh0_A DNAB-like replicative h 93.9 0.29 1E-05 51.3 11.3 53 196-252 67-119 (315)
293 1ly1_A Polynucleotide kinase; 93.9 0.028 9.4E-07 53.7 3.1 22 198-219 3-24 (181)
294 3vaa_A Shikimate kinase, SK; s 93.9 0.025 8.6E-07 55.1 2.7 23 197-219 25-47 (199)
295 3e70_C DPA, signal recognition 93.9 0.38 1.3E-05 50.5 12.0 26 195-220 127-152 (328)
296 3kb2_A SPBC2 prophage-derived 93.9 0.026 9E-07 53.4 2.8 22 198-219 2-23 (173)
297 2p5t_B PEZT; postsegregational 93.8 0.045 1.5E-06 55.6 4.6 42 177-219 13-54 (253)
298 2rhm_A Putative kinase; P-loop 93.7 0.038 1.3E-06 53.4 3.8 24 196-219 4-27 (193)
299 1kgd_A CASK, peripheral plasma 93.7 0.033 1.1E-06 53.3 3.1 23 197-219 5-27 (180)
300 3hws_A ATP-dependent CLP prote 93.7 0.042 1.4E-06 59.3 4.3 49 171-219 16-73 (363)
301 3uie_A Adenylyl-sulfate kinase 93.6 0.038 1.3E-06 53.8 3.6 25 196-220 24-48 (200)
302 1fx0_B ATP synthase beta chain 93.6 0.16 5.5E-06 55.6 8.6 100 181-286 154-276 (498)
303 3trf_A Shikimate kinase, SK; a 93.5 0.031 1.1E-06 53.6 2.6 23 197-219 5-27 (185)
304 1j8m_F SRP54, signal recogniti 93.4 0.32 1.1E-05 50.4 10.4 88 197-286 98-190 (297)
305 3fwy_A Light-independent proto 93.4 0.038 1.3E-06 57.9 3.4 40 195-236 46-85 (314)
306 1kag_A SKI, shikimate kinase I 93.4 0.031 1.1E-06 53.0 2.4 22 198-219 5-26 (173)
307 1ex7_A Guanylate kinase; subst 93.4 0.03 1E-06 53.5 2.2 22 198-219 2-23 (186)
308 1nks_A Adenylate kinase; therm 93.3 0.042 1.4E-06 53.1 3.2 22 198-219 2-23 (194)
309 1pgv_A TMD-1, tropomodulin TMD 93.2 0.063 2.2E-06 51.5 4.2 117 549-669 38-167 (197)
310 1knq_A Gluconate kinase; ALFA/ 93.2 0.045 1.5E-06 51.9 3.2 24 196-219 7-30 (175)
311 4gp7_A Metallophosphoesterase; 93.2 0.044 1.5E-06 51.8 3.0 24 196-219 8-31 (171)
312 2yvu_A Probable adenylyl-sulfa 93.1 0.11 3.6E-06 49.9 5.8 25 196-220 12-36 (186)
313 2bdt_A BH3686; alpha-beta prot 93.1 0.047 1.6E-06 52.6 3.2 22 198-219 3-24 (189)
314 3upu_A ATP-dependent DNA helic 93.1 0.069 2.4E-06 59.6 5.0 22 199-220 47-68 (459)
315 4eun_A Thermoresistant glucoki 93.0 0.044 1.5E-06 53.4 2.9 24 196-219 28-51 (200)
316 2ck3_D ATP synthase subunit be 93.0 0.35 1.2E-05 52.8 10.1 100 181-286 142-263 (482)
317 1ls1_A Signal recognition part 93.0 0.33 1.1E-05 50.3 9.6 37 197-235 98-134 (295)
318 2qt1_A Nicotinamide riboside k 93.0 0.058 2E-06 52.8 3.7 24 196-219 20-43 (207)
319 1uf9_A TT1252 protein; P-loop, 92.9 0.054 1.9E-06 52.8 3.5 25 195-219 6-30 (203)
320 3asz_A Uridine kinase; cytidin 92.9 0.056 1.9E-06 53.1 3.5 24 196-219 5-28 (211)
321 3t61_A Gluconokinase; PSI-biol 92.9 0.037 1.3E-06 54.0 2.2 23 197-219 18-40 (202)
322 3tau_A Guanylate kinase, GMP k 92.9 0.049 1.7E-06 53.4 3.0 24 196-219 7-30 (208)
323 1xjc_A MOBB protein homolog; s 92.9 0.092 3.2E-06 49.1 4.7 24 196-219 3-26 (169)
324 2ze6_A Isopentenyl transferase 92.8 0.049 1.7E-06 55.3 3.0 22 198-219 2-23 (253)
325 3iij_A Coilin-interacting nucl 92.8 0.039 1.3E-06 52.7 2.2 24 196-219 10-33 (180)
326 3tr0_A Guanylate kinase, GMP k 92.8 0.049 1.7E-06 53.2 2.9 23 197-219 7-29 (205)
327 1kht_A Adenylate kinase; phosp 92.8 0.048 1.6E-06 52.6 2.8 22 198-219 4-25 (192)
328 1ukz_A Uridylate kinase; trans 92.8 0.059 2E-06 52.6 3.4 24 196-219 14-37 (203)
329 3umf_A Adenylate kinase; rossm 92.8 0.057 2E-06 53.0 3.3 25 195-219 27-51 (217)
330 2j37_W Signal recognition part 92.8 0.97 3.3E-05 50.3 13.6 39 195-235 99-137 (504)
331 1zuh_A Shikimate kinase; alpha 92.7 0.047 1.6E-06 51.4 2.6 24 196-219 6-29 (168)
332 1zu4_A FTSY; GTPase, signal re 92.7 0.4 1.4E-05 50.2 9.9 38 196-235 104-141 (320)
333 2xxa_A Signal recognition part 92.7 0.48 1.7E-05 51.9 10.9 39 196-236 99-138 (433)
334 1y63_A LMAJ004144AAA protein; 92.7 0.058 2E-06 51.7 3.2 24 196-219 9-32 (184)
335 1tev_A UMP-CMP kinase; ploop, 92.7 0.055 1.9E-06 52.3 3.1 23 197-219 3-25 (196)
336 3kl4_A SRP54, signal recogniti 92.7 0.37 1.3E-05 52.5 9.8 38 196-235 96-133 (433)
337 3a00_A Guanylate kinase, GMP k 92.6 0.042 1.4E-06 52.8 2.1 22 198-219 2-23 (186)
338 2if2_A Dephospho-COA kinase; a 92.6 0.055 1.9E-06 52.9 3.0 22 198-219 2-23 (204)
339 2jaq_A Deoxyguanosine kinase; 92.6 0.052 1.8E-06 53.0 2.8 21 199-219 2-22 (205)
340 2c95_A Adenylate kinase 1; tra 92.6 0.057 2E-06 52.3 3.0 24 196-219 8-31 (196)
341 2qor_A Guanylate kinase; phosp 92.6 0.046 1.6E-06 53.5 2.3 24 196-219 11-34 (204)
342 1pgv_A TMD-1, tropomodulin TMD 92.6 0.057 2E-06 51.8 2.9 97 572-669 31-136 (197)
343 1q57_A DNA primase/helicase; d 92.5 0.38 1.3E-05 54.3 10.3 53 196-252 241-294 (503)
344 2plr_A DTMP kinase, probable t 92.5 0.14 4.8E-06 50.2 5.9 22 198-219 5-26 (213)
345 2yhs_A FTSY, cell division pro 92.5 0.46 1.6E-05 52.3 10.4 42 196-240 292-333 (503)
346 3llm_A ATP-dependent RNA helic 92.5 0.41 1.4E-05 47.7 9.4 89 198-287 77-187 (235)
347 1via_A Shikimate kinase; struc 92.5 0.046 1.6E-06 51.9 2.2 21 199-219 6-26 (175)
348 3rfe_A Platelet glycoprotein I 92.5 0.16 5.3E-06 45.4 5.6 42 603-646 24-66 (130)
349 1jjv_A Dephospho-COA kinase; P 92.4 0.065 2.2E-06 52.4 3.2 22 198-219 3-24 (206)
350 2j41_A Guanylate kinase; GMP, 92.4 0.062 2.1E-06 52.6 3.0 23 197-219 6-28 (207)
351 3a4m_A L-seryl-tRNA(SEC) kinas 92.4 0.063 2.2E-06 54.8 3.2 23 197-219 4-26 (260)
352 2r6a_A DNAB helicase, replicat 92.4 0.35 1.2E-05 53.7 9.5 51 196-249 202-252 (454)
353 2z0h_A DTMP kinase, thymidylat 92.4 0.21 7.1E-06 48.2 6.8 21 199-219 2-22 (197)
354 1cke_A CK, MSSA, protein (cyti 92.3 0.058 2E-06 53.7 2.8 22 198-219 6-27 (227)
355 1lvg_A Guanylate kinase, GMP k 92.3 0.05 1.7E-06 52.9 2.2 23 197-219 4-26 (198)
356 3jvv_A Twitching mobility prot 92.3 0.057 1.9E-06 57.6 2.7 111 197-320 123-235 (356)
357 1uj2_A Uridine-cytidine kinase 92.2 0.068 2.3E-06 54.3 3.2 24 196-219 21-44 (252)
358 3cm0_A Adenylate kinase; ATP-b 92.2 0.067 2.3E-06 51.3 3.0 23 197-219 4-26 (186)
359 1qf9_A UMP/CMP kinase, protein 92.2 0.086 2.9E-06 50.8 3.8 24 196-219 5-28 (194)
360 1sq5_A Pantothenate kinase; P- 92.2 0.14 4.7E-06 53.7 5.6 24 196-219 79-102 (308)
361 2iyv_A Shikimate kinase, SK; t 92.2 0.047 1.6E-06 52.4 1.8 21 199-219 4-24 (184)
362 1nn5_A Similar to deoxythymidy 92.2 0.13 4.4E-06 50.6 5.1 23 197-219 9-31 (215)
363 3tlx_A Adenylate kinase 2; str 92.2 0.096 3.3E-06 52.8 4.2 24 196-219 28-51 (243)
364 3l0o_A Transcription terminati 92.2 0.65 2.2E-05 49.1 10.4 54 179-238 162-216 (427)
365 2cdn_A Adenylate kinase; phosp 92.2 0.074 2.5E-06 51.8 3.2 24 196-219 19-42 (201)
366 2bbw_A Adenylate kinase 4, AK4 92.1 0.065 2.2E-06 54.2 2.9 23 197-219 27-49 (246)
367 3aez_A Pantothenate kinase; tr 92.1 0.078 2.7E-06 55.5 3.5 24 196-219 89-112 (312)
368 4akg_A Glutathione S-transfera 92.0 1.1 3.9E-05 60.0 14.9 227 200-480 1270-1537(2695)
369 2q6t_A DNAB replication FORK h 92.0 0.68 2.3E-05 51.2 11.3 54 196-252 199-252 (444)
370 2bwj_A Adenylate kinase 5; pho 92.0 0.073 2.5E-06 51.6 3.0 23 197-219 12-34 (199)
371 1e6c_A Shikimate kinase; phosp 92.0 0.055 1.9E-06 51.2 2.0 22 198-219 3-24 (173)
372 3ney_A 55 kDa erythrocyte memb 92.0 0.076 2.6E-06 51.1 3.0 24 196-219 18-41 (197)
373 2hf9_A Probable hydrogenase ni 92.0 0.11 3.6E-06 51.7 4.2 25 196-220 37-61 (226)
374 1htw_A HI0065; nucleotide-bind 91.9 0.088 3E-06 48.8 3.2 24 196-219 32-55 (158)
375 2pbr_A DTMP kinase, thymidylat 91.9 0.27 9.3E-06 47.2 7.0 21 199-219 2-22 (195)
376 2pez_A Bifunctional 3'-phospho 91.8 0.085 2.9E-06 50.2 3.2 24 196-219 4-27 (179)
377 2pt5_A Shikimate kinase, SK; a 91.8 0.074 2.5E-06 50.0 2.7 21 199-219 2-22 (168)
378 2vli_A Antibiotic resistance p 91.8 0.054 1.8E-06 51.8 1.7 23 197-219 5-27 (183)
379 1znw_A Guanylate kinase, GMP k 91.8 0.079 2.7E-06 51.9 3.0 23 197-219 20-42 (207)
380 2jeo_A Uridine-cytidine kinase 91.6 0.095 3.3E-06 52.9 3.5 24 196-219 24-47 (245)
381 1rj9_A FTSY, signal recognitio 91.6 0.14 4.8E-06 53.3 4.8 24 196-219 101-124 (304)
382 1tue_A Replication protein E1; 91.6 0.11 3.7E-06 49.9 3.5 37 179-220 45-81 (212)
383 2grj_A Dephospho-COA kinase; T 91.6 0.09 3.1E-06 50.6 3.0 24 196-219 11-34 (192)
384 2pt7_A CAG-ALFA; ATPase, prote 91.6 0.21 7.2E-06 52.7 6.1 106 198-318 172-277 (330)
385 4e22_A Cytidylate kinase; P-lo 91.5 0.085 2.9E-06 53.5 3.0 23 197-219 27-49 (252)
386 3e1s_A Exodeoxyribonuclease V, 91.5 0.23 8E-06 56.7 6.9 104 198-314 205-314 (574)
387 2f6r_A COA synthase, bifunctio 91.5 0.11 3.7E-06 53.6 3.8 23 196-218 74-96 (281)
388 2wsm_A Hydrogenase expression/ 91.5 0.098 3.3E-06 51.7 3.3 40 175-220 14-53 (221)
389 1z6g_A Guanylate kinase; struc 91.4 0.072 2.5E-06 52.7 2.2 23 197-219 23-45 (218)
390 1aky_A Adenylate kinase; ATP:A 91.4 0.086 3E-06 52.2 2.8 23 197-219 4-26 (220)
391 1zd8_A GTP:AMP phosphotransfer 91.4 0.087 3E-06 52.4 2.8 24 196-219 6-29 (227)
392 2f1r_A Molybdopterin-guanine d 91.2 0.071 2.4E-06 50.2 1.8 23 198-220 3-25 (171)
393 1gtv_A TMK, thymidylate kinase 91.2 0.06 2E-06 53.0 1.4 21 199-219 2-22 (214)
394 3hjn_A DTMP kinase, thymidylat 91.2 0.53 1.8E-05 45.4 8.1 49 199-249 2-50 (197)
395 3b9q_A Chloroplast SRP recepto 91.1 0.18 6.3E-06 52.3 5.1 25 196-220 99-123 (302)
396 2wwf_A Thymidilate kinase, put 91.1 0.1 3.5E-06 51.2 3.0 25 196-220 9-33 (212)
397 3rfe_A Platelet glycoprotein I 91.1 0.28 9.7E-06 43.6 5.6 53 615-670 11-66 (130)
398 3cmu_A Protein RECA, recombina 91.0 0.28 9.7E-06 63.3 7.5 84 196-286 1426-1515(2050)
399 1m7g_A Adenylylsulfate kinase; 91.0 0.12 4.1E-06 50.7 3.3 25 196-220 24-48 (211)
400 2i3b_A HCR-ntpase, human cance 91.0 0.089 3.1E-06 50.5 2.3 23 199-221 3-25 (189)
401 1s96_A Guanylate kinase, GMP k 90.9 0.11 3.7E-06 51.3 2.9 24 196-219 15-38 (219)
402 1zak_A Adenylate kinase; ATP:A 90.9 0.094 3.2E-06 52.0 2.5 23 197-219 5-27 (222)
403 3vr4_D V-type sodium ATPase su 90.8 0.2 6.7E-06 54.4 5.0 99 181-286 140-258 (465)
404 2dr3_A UPF0273 protein PH0284; 90.8 0.21 7.2E-06 50.2 5.1 39 197-237 23-61 (247)
405 3fb4_A Adenylate kinase; psych 90.8 0.11 3.7E-06 51.3 2.8 21 199-219 2-22 (216)
406 2ged_A SR-beta, signal recogni 90.7 0.16 5.6E-06 48.7 4.1 25 196-220 47-71 (193)
407 1yrb_A ATP(GTP)binding protein 90.7 0.15 5.1E-06 51.9 3.9 27 194-220 11-37 (262)
408 3end_A Light-independent proto 90.7 0.29 1E-05 51.1 6.2 43 194-238 38-80 (307)
409 1vht_A Dephospho-COA kinase; s 90.7 0.13 4.5E-06 50.7 3.3 23 197-219 4-26 (218)
410 3be4_A Adenylate kinase; malar 90.6 0.1 3.6E-06 51.4 2.5 22 198-219 6-27 (217)
411 1tf7_A KAIC; homohexamer, hexa 90.6 0.23 7.7E-06 56.5 5.6 25 196-220 280-304 (525)
412 3dl0_A Adenylate kinase; phosp 90.6 0.11 3.9E-06 51.1 2.8 21 199-219 2-22 (216)
413 2onk_A Molybdate/tungstate ABC 90.6 0.12 4.1E-06 51.8 2.9 23 196-219 24-46 (240)
414 1g41_A Heat shock protein HSLU 90.6 0.21 7E-06 54.6 5.0 50 170-219 15-72 (444)
415 2pcj_A ABC transporter, lipopr 90.5 0.13 4.4E-06 51.0 3.1 22 198-219 31-52 (224)
416 3nwj_A ATSK2; P loop, shikimat 90.5 0.091 3.1E-06 52.9 2.0 22 198-219 49-70 (250)
417 2v54_A DTMP kinase, thymidylat 90.5 0.12 4.1E-06 50.3 2.8 22 198-219 5-26 (204)
418 3tif_A Uncharacterized ABC tra 90.5 0.13 4.3E-06 51.5 3.0 22 198-219 32-53 (235)
419 3p32_A Probable GTPase RV1496/ 90.4 0.42 1.4E-05 51.1 7.3 37 179-219 65-101 (355)
420 2r9v_A ATP synthase subunit al 90.4 0.38 1.3E-05 52.8 6.9 97 181-286 164-277 (515)
421 2og2_A Putative signal recogni 90.4 0.23 7.9E-06 52.8 5.0 25 196-220 156-180 (359)
422 3a8t_A Adenylate isopentenyltr 90.4 0.15 5.3E-06 53.2 3.6 24 196-219 39-62 (339)
423 2qe7_A ATP synthase subunit al 90.3 0.35 1.2E-05 53.1 6.5 97 181-286 151-264 (502)
424 1np6_A Molybdopterin-guanine d 90.3 0.13 4.4E-06 48.6 2.7 25 196-220 5-29 (174)
425 3d3q_A TRNA delta(2)-isopenten 90.3 0.13 4.5E-06 53.9 3.0 22 198-219 8-29 (340)
426 1ny5_A Transcriptional regulat 90.2 1.1 3.9E-05 48.3 10.6 45 171-219 138-182 (387)
427 3b85_A Phosphate starvation-in 90.1 0.12 4E-06 50.5 2.3 23 198-220 23-45 (208)
428 2eyu_A Twitching motility prot 90.0 0.29 9.8E-06 49.7 5.2 110 196-319 24-136 (261)
429 3ake_A Cytidylate kinase; CMP 90.0 0.14 4.8E-06 50.0 2.8 21 199-219 4-24 (208)
430 3r20_A Cytidylate kinase; stru 89.9 0.15 5.2E-06 50.5 3.0 23 197-219 9-31 (233)
431 3lnc_A Guanylate kinase, GMP k 89.9 0.1 3.5E-06 52.1 1.8 22 198-219 28-50 (231)
432 2vp4_A Deoxynucleoside kinase; 89.9 0.17 5.9E-06 50.4 3.4 25 195-219 18-42 (230)
433 3sr0_A Adenylate kinase; phosp 89.9 0.15 5E-06 49.7 2.8 21 199-219 2-22 (206)
434 3gfo_A Cobalt import ATP-bindi 89.9 0.15 5E-06 52.2 2.9 22 198-219 35-56 (275)
435 1nlf_A Regulatory protein REPA 89.8 0.29 1E-05 50.3 5.3 41 197-239 30-80 (279)
436 1e4v_A Adenylate kinase; trans 89.8 0.16 5.3E-06 50.0 3.0 21 199-219 2-22 (214)
437 3crm_A TRNA delta(2)-isopenten 89.7 0.16 5.3E-06 53.0 3.0 23 197-219 5-27 (323)
438 4eaq_A DTMP kinase, thymidylat 89.7 0.37 1.3E-05 47.8 5.7 25 196-220 25-49 (229)
439 3gqb_B V-type ATP synthase bet 89.7 0.18 6E-06 54.8 3.5 101 181-286 136-261 (464)
440 3bgw_A DNAB-like replicative h 89.7 1.4 4.8E-05 48.5 10.9 52 196-251 196-247 (444)
441 1b0u_A Histidine permease; ABC 89.7 0.16 5.3E-06 51.7 2.9 23 197-219 32-54 (262)
442 2xb4_A Adenylate kinase; ATP-b 89.7 0.15 5.2E-06 50.5 2.8 21 199-219 2-22 (223)
443 3k1j_A LON protease, ATP-depen 89.6 0.15 5.1E-06 59.1 3.1 42 170-219 41-82 (604)
444 3cmu_A Protein RECA, recombina 89.5 0.65 2.2E-05 60.0 9.0 85 196-287 382-472 (2050)
445 1ak2_A Adenylate kinase isoenz 89.5 0.16 5.5E-06 50.7 2.9 24 196-219 15-38 (233)
446 1fx0_A ATP synthase alpha chai 89.5 0.31 1.1E-05 53.5 5.3 85 198-286 164-265 (507)
447 3vr4_A V-type sodium ATPase ca 89.5 0.94 3.2E-05 50.4 9.0 58 181-247 221-279 (600)
448 1ji0_A ABC transporter; ATP bi 89.5 0.17 5.7E-06 50.8 3.0 22 198-219 33-54 (240)
449 4g1u_C Hemin import ATP-bindin 89.5 0.16 5.6E-06 51.7 2.9 22 198-219 38-59 (266)
450 2r8r_A Sensor protein; KDPD, P 89.5 0.56 1.9E-05 45.8 6.5 105 198-316 7-127 (228)
451 1sgw_A Putative ABC transporte 89.5 0.14 4.9E-06 50.1 2.4 22 198-219 36-57 (214)
452 2wji_A Ferrous iron transport 89.5 0.21 7.3E-06 46.6 3.5 23 198-220 4-26 (165)
453 3exa_A TRNA delta(2)-isopenten 89.4 0.18 6.2E-06 51.9 3.2 23 197-219 3-25 (322)
454 2olj_A Amino acid ABC transpor 89.4 0.17 5.8E-06 51.4 2.9 23 197-219 50-72 (263)
455 1oix_A RAS-related protein RAB 89.4 0.18 6E-06 48.6 3.0 25 196-220 28-52 (191)
456 1g6h_A High-affinity branched- 89.4 0.17 5.8E-06 51.3 3.0 22 198-219 34-55 (257)
457 2ck3_A ATP synthase subunit al 89.4 0.57 1.9E-05 51.5 7.2 101 181-286 151-272 (510)
458 3b5x_A Lipid A export ATP-bind 89.3 1.1 3.8E-05 51.4 10.1 23 197-219 369-391 (582)
459 2d2e_A SUFC protein; ABC-ATPas 89.3 0.18 6.1E-06 50.9 3.0 22 198-219 30-51 (250)
460 2ff7_A Alpha-hemolysin translo 89.2 0.18 6.1E-06 50.8 3.0 22 198-219 36-57 (247)
461 2zej_A Dardarin, leucine-rich 89.2 0.17 5.9E-06 48.2 2.7 22 199-220 4-25 (184)
462 2v3c_C SRP54, signal recogniti 89.2 0.28 9.5E-06 53.8 4.7 25 196-220 98-122 (432)
463 1vpl_A ABC transporter, ATP-bi 89.1 0.18 6.2E-06 51.0 2.9 22 198-219 42-63 (256)
464 2fz4_A DNA repair protein RAD2 89.1 0.84 2.9E-05 45.5 7.9 101 200-314 111-227 (237)
465 3zvl_A Bifunctional polynucleo 89.1 0.19 6.6E-06 55.0 3.3 25 195-219 256-280 (416)
466 3foz_A TRNA delta(2)-isopenten 89.1 0.22 7.5E-06 51.2 3.5 24 196-219 9-32 (316)
467 2zu0_C Probable ATP-dependent 89.1 0.19 6.4E-06 51.3 3.0 22 198-219 47-68 (267)
468 1cp2_A CP2, nitrogenase iron p 89.0 0.42 1.4E-05 48.8 5.7 38 198-237 2-39 (269)
469 2qi9_C Vitamin B12 import ATP- 88.9 0.19 6.7E-06 50.5 2.9 22 198-219 27-48 (249)
470 2ixe_A Antigen peptide transpo 88.9 0.19 6.6E-06 51.3 3.0 23 197-219 45-67 (271)
471 2ghi_A Transport protein; mult 88.9 0.19 6.6E-06 51.0 3.0 22 198-219 47-68 (260)
472 1ltq_A Polynucleotide kinase; 88.9 0.19 6.6E-06 52.4 3.0 22 198-219 3-24 (301)
473 4edh_A DTMP kinase, thymidylat 88.7 0.77 2.6E-05 44.9 7.0 24 197-220 6-29 (213)
474 2nq2_C Hypothetical ABC transp 88.7 0.2 7E-06 50.6 2.9 22 198-219 32-53 (253)
475 2yz2_A Putative ABC transporte 88.7 0.2 7E-06 51.0 3.0 22 198-219 34-55 (266)
476 2ihy_A ABC transporter, ATP-bi 88.6 0.21 7.1E-06 51.3 2.9 22 198-219 48-69 (279)
477 2afh_E Nitrogenase iron protei 88.5 0.49 1.7E-05 48.9 5.9 39 197-237 2-40 (289)
478 3mfy_A V-type ATP synthase alp 88.5 0.73 2.5E-05 51.0 7.2 59 181-248 216-275 (588)
479 2v9p_A Replication protein E1; 88.5 0.21 7.3E-06 51.7 3.0 24 196-219 125-148 (305)
480 1q3t_A Cytidylate kinase; nucl 88.5 0.22 7.4E-06 49.9 3.0 25 195-219 14-38 (236)
481 1w36_D RECD, exodeoxyribonucle 88.4 0.83 2.8E-05 52.7 8.2 47 197-245 164-213 (608)
482 2dyk_A GTP-binding protein; GT 88.4 0.24 8.2E-06 45.7 3.1 23 198-220 2-24 (161)
483 1a7j_A Phosphoribulokinase; tr 88.3 0.13 4.4E-06 53.3 1.2 24 196-219 4-27 (290)
484 3f9v_A Minichromosome maintena 88.2 0.18 6E-06 58.1 2.4 21 199-219 329-349 (595)
485 2c61_A A-type ATP synthase non 88.2 0.24 8.3E-06 54.0 3.3 100 181-285 141-258 (469)
486 2qmh_A HPR kinase/phosphorylas 88.2 0.25 8.6E-06 47.1 3.0 22 198-219 35-56 (205)
487 3ld9_A DTMP kinase, thymidylat 88.1 0.88 3E-05 44.7 7.0 25 196-220 20-44 (223)
488 2f9l_A RAB11B, member RAS onco 88.1 0.23 7.8E-06 48.1 2.8 24 197-220 5-28 (199)
489 3cmw_A Protein RECA, recombina 88.1 0.79 2.7E-05 58.4 8.2 81 198-285 384-470 (1706)
490 2wjg_A FEOB, ferrous iron tran 88.1 0.29 9.9E-06 46.7 3.5 25 196-220 6-30 (188)
491 3oaa_A ATP synthase subunit al 87.9 1.3 4.5E-05 48.5 8.7 97 181-286 151-264 (513)
492 3nh6_A ATP-binding cassette SU 87.9 0.22 7.4E-06 51.8 2.6 23 197-219 80-102 (306)
493 3sop_A Neuronal-specific septi 87.8 0.27 9.1E-06 50.2 3.1 22 199-220 4-25 (270)
494 4dzz_A Plasmid partitioning pr 87.7 0.62 2.1E-05 45.1 5.7 44 198-243 2-46 (206)
495 1svm_A Large T antigen; AAA+ f 87.7 0.26 8.8E-06 52.9 3.1 24 196-219 168-191 (377)
496 3dzd_A Transcriptional regulat 87.7 0.29 9.8E-06 52.6 3.5 46 170-219 129-174 (368)
497 2ce2_X GTPase HRAS; signaling 87.7 0.25 8.7E-06 45.7 2.7 22 199-220 5-26 (166)
498 3v9p_A DTMP kinase, thymidylat 87.5 0.74 2.5E-05 45.4 6.1 24 197-220 25-48 (227)
499 2xau_A PRE-mRNA-splicing facto 87.5 2.9 9.9E-05 49.6 12.3 102 178-287 98-219 (773)
500 1z2a_A RAS-related protein RAB 87.4 0.32 1.1E-05 45.2 3.3 25 196-220 4-28 (168)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2e-49 Score=460.95 Aligned_cols=316 Identities=19% Similarity=0.263 Sum_probs=257.4
Q ss_pred ecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhc--hHHHHhcCCeEEEEEeCCCc--cHHHHHHHH
Q 002362 173 CGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACN--HEEVKRKFDKILWVCVSETF--EEFRVAKAI 248 (930)
Q Consensus 173 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i 248 (930)
|||++++++|.++|.... ....++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.+ +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997543 23689999999999999999999998 56899999999999999985 899999999
Q ss_pred HHHhcCCCC-------CCccHHHHHHHHHHHhcCc-eEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChHHHh
Q 002362 249 VEALDGHES-------RLGEFQSLIKHIYESVAGM-CFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKSVAS 320 (930)
Q Consensus 249 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 320 (930)
+.+++.... +..+.+.+...+++.|+++ ||||||||||+.+...|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999976421 2334567889999999996 9999999999854222321 27899999999999998
Q ss_pred hhCC-cceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHhhhcCCCCHHHHHHHHhcc
Q 002362 321 MMGS-TNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLMRSKETEEEWRRILNSG 399 (930)
Q Consensus 321 ~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l~~~ 399 (930)
.++. ..+|++++|+++|||+||.+++|+... ++++++++.+|+++|+|+||||+++|+.|+.+ + .+|...+.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 8763 468999999999999999999886532 46778899999999999999999999999766 2 2333334333
Q ss_pred cccchhhhhhHHHHHHHhhhcCChhHHHHHh-----------HhcCCCCCcccChHHHHHHHHHh--CCcCCCc-chhHH
Q 002362 400 LWKVEEIEKDILSSLLLSYNDLPSKVKKCFS-----------YCAIFPKDYNIEKDRLITLWMAQ--GYLDTEQ-DEEME 465 (930)
Q Consensus 400 ~~~~~~~~~~i~~~l~lsy~~L~~~~k~cf~-----------~~s~fp~~~~i~~~~Li~~w~a~--g~i~~~~-~~~~e 465 (930)
.+.. ....+.+++.+||++||.++|.||+ |||+||+++.|+ +++|+|+ ||+.... +.+++
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 2221 2345888999999999999999999 999999999999 8999999 9998766 56778
Q ss_pred HHHHHHHHHHHHccCCcccccCCCCceeeEEecHHHHHHHHHhhhccce
Q 002362 466 SKGEEYFGILASRSFFQEFTKSYDNCIMQCKMHDMVHDFGQFISQNECL 514 (930)
Q Consensus 466 ~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~mh~lv~~~a~~~s~~e~~ 514 (930)
++++ ||++|+++||++....+ ...+|+|||++|++|++++.+++.
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 8888 99999999999986543 345799999999999999887754
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.7e-39 Score=378.09 Aligned_cols=285 Identities=22% Similarity=0.262 Sum_probs=228.5
Q ss_pred eecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCe-EEEEEeCCCccHHHHHHHHHH
Q 002362 172 ICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDK-ILWVCVSETFEEFRVAKAIVE 250 (930)
Q Consensus 172 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~ 250 (930)
.|||++++++|.++|... +..++|+|+||||+||||||+++|++.+++.+|+. ++||++++.++...++..|++
T Consensus 130 ~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 499999999999999752 24789999999999999999999998789999986 999999999998888888887
Q ss_pred HhcCC------CCC-----CccHHHHHHHHHHHh---cCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCCh
Q 002362 251 ALDGH------ESR-----LGEFQSLIKHIYESV---AGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKK 316 (930)
Q Consensus 251 ~l~~~------~~~-----~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 316 (930)
.+... ..+ ..+.+++...+++.+ .+||+||||||||+. +.|+.+ + +||+||||||++
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccCh
Confidence 54321 001 123455666777765 689999999999983 345443 2 689999999999
Q ss_pred HHHhhhCCcceEeCC------CCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHhhhcCCC-CH
Q 002362 317 SVASMMGSTNIISIK------ELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLMRSKE-TE 389 (930)
Q Consensus 317 ~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~l~~~~-~~ 389 (930)
.++..+.....++++ +|+++|||+||.+.. +... .++..+| |+|+||||+++|+.|+.+. +.
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~~-------eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRP-------QDLPREV---LTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCCT-------TTHHHHH---CCCCHHHHHHHHHHHHHSCSSH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCCH-------HHHHHHH---hCCCHHHHHHHHHHHhCCCCCH
Confidence 998755444456666 999999999999984 3221 1123333 9999999999999998874 67
Q ss_pred HHHHHHHhcccccchhhhhhHHHHHHHhhhcCChhH-HHHHhHhcCCCCCcccChHHHHHHHHHhCCcCCCcchhHHHHH
Q 002362 390 EEWRRILNSGLWKVEEIEKDILSSLLLSYNDLPSKV-KKCFSYCAIFPKDYNIEKDRLITLWMAQGYLDTEQDEEMESKG 468 (930)
Q Consensus 390 ~~w~~~l~~~~~~~~~~~~~i~~~l~lsy~~L~~~~-k~cf~~~s~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~e~~~ 468 (930)
++|... ....+..+|.+||+.||++. |.||+|||+||+++.|+++.++.+|+++| ++.+
T Consensus 345 eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedA 404 (1221)
T 1vt4_I 345 DNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDV 404 (1221)
T ss_dssp HHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHH
T ss_pred HHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHH
Confidence 888763 13469999999999999999 99999999999999999999999999887 1358
Q ss_pred HHHHHHHHHccCCcccccCCCCceeeEEecHHHHHHHH
Q 002362 469 EEYFGILASRSFFQEFTKSYDNCIMQCKMHDMVHDFGQ 506 (930)
Q Consensus 469 ~~~~~~L~~~~l~~~~~~~~~~~~~~~~mh~lv~~~a~ 506 (930)
+.+|++|+++||++.. +...+|+|||++++++.
T Consensus 405 e~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 405 MVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHhc
Confidence 8899999999999973 12246899999998653
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.9e-37 Score=401.14 Aligned_cols=312 Identities=22% Similarity=0.305 Sum_probs=248.1
Q ss_pred ccCCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHH-HhcC-CeEEEEEeCCCcc--HH
Q 002362 167 IDEEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEV-KRKF-DKILWVCVSETFE--EF 242 (930)
Q Consensus 167 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~ 242 (930)
.+.+.||||++++++|.++|.... ...++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 345679999999999999997543 36899999999999999999999998654 4445 6788999998543 44
Q ss_pred HHHHHHHHHhcCCC----CCCccHHHHHHHHHHHhcCc--eEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCCh
Q 002362 243 RVAKAIVEALDGHE----SRLGEFQSLIKHIYESVAGM--CFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKK 316 (930)
Q Consensus 243 ~~~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 316 (930)
..+..++..+.... ....+.+++...++..+.++ ||||||||||+.. .|.. ..+||+||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--~~~~-------~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--VLKA-------FDNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--HHTT-------TCSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--HHHh-------hcCCCEEEEEcCCH
Confidence 45677777776532 22356788888999999877 9999999999742 3333 25789999999999
Q ss_pred HHHhh-hCCcceEeCCC-CChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHhhhcCCCCHHHHHH
Q 002362 317 SVASM-MGSTNIISIKE-LTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLMRSKETEEEWRR 394 (930)
Q Consensus 317 ~v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~ 394 (930)
.++.. ++....+++.+ |+++|+|+||...++... +.+.+++++|+++|+|+||||+++|++|+.+. ..|..
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~ 340 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAY 340 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHH
Confidence 99854 45677899996 999999999999885432 23345689999999999999999999998765 34655
Q ss_pred HHhc---ccccc-----hhhhhhHHHHHHHhhhcCChhHHHHHhHhcCCCCCcccChHHHHHHHHHhCCcCCCcchhHHH
Q 002362 395 ILNS---GLWKV-----EEIEKDILSSLLLSYNDLPSKVKKCFSYCAIFPKDYNIEKDRLITLWMAQGYLDTEQDEEMES 466 (930)
Q Consensus 395 ~l~~---~~~~~-----~~~~~~i~~~l~lsy~~L~~~~k~cf~~~s~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~e~ 466 (930)
.+.. ..+.. ......+..++.+||+.||++.|.||+|||+||+++.|+++.++.+|.++ ++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~ 409 (1249)
T 3sfz_A 341 YLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TE 409 (1249)
T ss_dssp HHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HH
T ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HH
Confidence 5442 22211 11224699999999999999999999999999999999999999999554 46
Q ss_pred HHHHHHHHHHHccCCcccccCCCCceeeEEecHHHHHHHHHhhhcc
Q 002362 467 KGEEYFGILASRSFFQEFTKSYDNCIMQCKMHDMVHDFGQFISQNE 512 (930)
Q Consensus 467 ~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~mh~lv~~~a~~~s~~e 512 (930)
.++.++++|+++||++... .+...+|+||+++|++++..+.++
T Consensus 410 ~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 410 EVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 7889999999999998643 344567999999999999987765
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=7.1e-34 Score=336.08 Aligned_cols=305 Identities=22% Similarity=0.300 Sum_probs=232.7
Q ss_pred CCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHH-HhcC-CeEEEEEeCCCccHHHHHH
Q 002362 169 EEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEV-KRKF-DKILWVCVSETFEEFRVAK 246 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~~ 246 (930)
++.||||+.++++|.++|.... ...++|+|+||||+||||||+.++++.++ +.+| +.++|++++.. +...++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 4569999999999999997532 35789999999999999999999998766 8899 58999999875 3333444
Q ss_pred HH---HHHhcCC----CCCCccHHHHHHHHHHHhcC--ceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChH
Q 002362 247 AI---VEALDGH----ESRLGEFQSLIKHIYESVAG--MCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKS 317 (930)
Q Consensus 247 ~i---~~~l~~~----~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 317 (930)
.+ +..++.. .....+.+.....+...+.+ +++||||||+|+.. .+ ..+ .+|++||||||+..
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-----~l-~~l---~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-----VL-KAF---DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-----HH-HTT---CSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-----HH-HHh---cCCCeEEEECCCcH
Confidence 33 3444421 12345667778888888865 78999999998732 22 222 56899999999998
Q ss_pred HHhhhCCcceEeC---CCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHhhhcCCCCHHHHHH
Q 002362 318 VASMMGSTNIISI---KELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLMRSKETEEEWRR 394 (930)
Q Consensus 318 v~~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~ 394 (930)
++..+. ...+++ ++|+++|+++||...++... ....+.+.+|+++|+|+||||..+|+.++.+. ..|..
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~ 340 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEY 340 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHH
Confidence 876643 233443 69999999999999886421 12234588999999999999999999998764 35776
Q ss_pred HHhccc---cc-c----hhhhhhHHHHHHHhhhcCChhHHHHHhHhcCCCCCcccChHHHHHHHHHhCCcCCCcchhHHH
Q 002362 395 ILNSGL---WK-V----EEIEKDILSSLLLSYNDLPSKVKKCFSYCAIFPKDYNIEKDRLITLWMAQGYLDTEQDEEMES 466 (930)
Q Consensus 395 ~l~~~~---~~-~----~~~~~~i~~~l~lsy~~L~~~~k~cf~~~s~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~e~ 466 (930)
.+.... +. + ......+..++..||+.||++.|.||++||+||+++.|+.+.+..+|.++ .+
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~ 409 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TE 409 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HH
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------HH
Confidence 654321 11 1 11234689999999999999999999999999999999999999999542 24
Q ss_pred HHHHHHHHHHHccCCcccccCCCCceeeEEecHHHHHHHHHhh
Q 002362 467 KGEEYFGILASRSFFQEFTKSYDNCIMQCKMHDMVHDFGQFIS 509 (930)
Q Consensus 467 ~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~mh~lv~~~a~~~s 509 (930)
.+..++++|+++||++.... +...+|+||++++++++...
T Consensus 410 ~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 410 EVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHHhhh
Confidence 56889999999999985432 34457999999999998774
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=8.4e-29 Score=301.07 Aligned_cols=361 Identities=19% Similarity=0.208 Sum_probs=195.4
Q ss_pred cceeEEEEEecCCc-cccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcc
Q 002362 529 EKVRHLLLIVGNGA-SFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRN 607 (930)
Q Consensus 529 ~~~r~l~l~~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~ 607 (930)
..++++.+..+.+. .++..+..+++|++|.+.++... +..+...+.++++|++|++++|... ..+|..
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-----~~ip~~~l~~l~~L~~L~Ls~n~l~------~~~p~~ 362 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS-----GELPMDTLLKMRGLKVLDLSFNEFS------GELPES 362 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEE-----EECCHHHHTTCTTCCEEECCSSEEE------ECCCTT
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCccc-----CcCCHHHHhcCCCCCEEeCcCCccC------ccccHH
Confidence 44555555555443 23445556666666666665421 1123334566666666666654322 245555
Q ss_pred cccCC-CCCeeeccCCccc-cccccccc--CCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCC
Q 002362 608 IERLV-HLRYLNLSNQSIR-KLPDTLCE--LYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLT 683 (930)
Q Consensus 608 i~~L~-~Lr~L~L~~~~i~-~lp~~i~~--L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~ 683 (930)
++++. +|++|++++|.+. .+|..++. +++|++|++++|.....+|..+..+++|++|++++|.....+|..++.++
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 442 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC
Confidence 65555 5666666666554 34544444 55666666666654445666666666666666666644445566666666
Q ss_pred CCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCc
Q 002362 684 SLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKN 763 (930)
Q Consensus 684 ~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~ 763 (930)
+|+.|++..+.... .++..+..+++|+.|++.++...+.++. .+..+++|+.|++++|.+.+.
T Consensus 443 ~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~-------~l~~l~~L~~L~L~~N~l~~~------ 505 (768)
T 3rgz_A 443 KLRDLKLWLNMLEG----EIPQELMYVKTLETLILDFNDLTGEIPS-------GLSNCTNLNWISLSNNRLTGE------ 505 (768)
T ss_dssp TCCEEECCSSCCCS----CCCGGGGGCTTCCEEECCSSCCCSCCCG-------GGGGCTTCCEEECCSSCCCSC------
T ss_pred CCCEEECCCCcccC----cCCHHHcCCCCceEEEecCCcccCcCCH-------HHhcCCCCCEEEccCCccCCc------
Confidence 66666654443322 2344455555666555555554444333 355556666666666665532
Q ss_pred cchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCC------------------------
Q 002362 764 EDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP------------------------ 819 (930)
Q Consensus 764 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~------------------------ 819 (930)
++..+..+++|++|++++|.+.+.+|.++..+++|+.|+|++|.+.+.+|.
T Consensus 506 -----~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (768)
T 3rgz_A 506 -----IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580 (768)
T ss_dssp -----CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEEC
T ss_pred -----CChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccc
Confidence 334444556666666666666544566666666666666666554433321
Q ss_pred -----------------------------------------------CCCCCCcceeeeccCcCceEeCCccccCccccc
Q 002362 820 -----------------------------------------------LGKLPSLEKLSISFMCSVKRVDNEILGIEITIA 852 (930)
Q Consensus 820 -----------------------------------------------l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 852 (930)
++.+++|+.|+|++|.-...++..+ ..
T Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l------~~ 654 (768)
T 3rgz_A 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI------GS 654 (768)
T ss_dssp CSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG------GG
T ss_pred ccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH------hc
Confidence 2334555555555443222222221 14
Q ss_pred Cccccceeeccc-----------cccccceeeeccCCccCCCCCCCCCCCCccEEEEecC--------------------
Q 002362 853 FPKLKSLTISWI-----------IMPRLSSLTFDSCPKLKALPDHFHQTTTLKEFNIGWN-------------------- 901 (930)
Q Consensus 853 f~~L~~L~l~~~-----------~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~n-------------------- 901 (930)
+++|+.|++++| .+++|+.|++++|.....+|..+..+++|++|++++|
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~ 734 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 734 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGG
T ss_pred cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHh
Confidence 667777777776 4677888888888555577888888888888888876
Q ss_pred ------chhhHHhhcCCCCCCcccccccCcccc
Q 002362 902 ------CGLLEKRYRKGEGEDWHKISHIPNLEI 928 (930)
Q Consensus 902 ------c~~l~~~~~~~~~~~~~~i~hip~~~~ 928 (930)
|..-...|..+.+++|++|+|+|++..
T Consensus 735 ~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~~ 767 (768)
T 3rgz_A 735 LNNPGLCGYPLPRCDPSNADGYAHHQRSHHHHH 767 (768)
T ss_dssp CSCTEEESTTSCCCCSCC---------------
T ss_pred cCCchhcCCCCcCCCCCccCCCCCCCCccccCC
Confidence 432123788899999999999998754
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=6.1e-26 Score=275.91 Aligned_cols=340 Identities=20% Similarity=0.224 Sum_probs=259.5
Q ss_pred CcceeEEEEEecCCc-cccccccC-CCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccC
Q 002362 528 DEKVRHLLLIVGNGA-SFPVSTCG-VKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIP 605 (930)
Q Consensus 528 ~~~~r~l~l~~~~~~-~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp 605 (930)
...++++.+..+.+. .++..+.. +++|++|.+.++.... ..+..+.+++.|++|++++|... ..+|
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~------~~p~~~~~l~~L~~L~L~~n~l~------~~ip 335 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG------AVPPFFGSCSLLESLALSSNNFS------GELP 335 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE------CCCGGGGGCTTCCEEECCSSEEE------EECC
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC------ccchHHhcCCCccEEECCCCccc------CcCC
Confidence 345677777666554 44555544 4888888888875421 13344778888888888865432 3567
Q ss_pred cc-cccCCCCCeeeccCCccc-ccccccccCC-cccEEeccCCCCCccccccccc--cCCcceEeecCcccccccCCcCC
Q 002362 606 RN-IERLVHLRYLNLSNQSIR-KLPDTLCELY-NLQKLDISCCCKLKELPQGIGK--LINMRHLLNYGTISLRYMPVGIG 680 (930)
Q Consensus 606 ~~-i~~L~~Lr~L~L~~~~i~-~lp~~i~~L~-~L~~L~l~~~~~~~~lp~~i~~--L~~L~~L~l~~~~~~~~~p~~i~ 680 (930)
.. ++++++|++|++++|.+. .+|..+.++. +|++|++++|.....+|..+.. +++|++|++++|.....+|..++
T Consensus 336 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~ 415 (768)
T 3rgz_A 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415 (768)
T ss_dssp HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG
T ss_pred HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh
Confidence 55 788888888888888877 7788888887 8888888888866677777766 78899999988866667888889
Q ss_pred CCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcC
Q 002362 681 RLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQR 760 (930)
Q Consensus 681 ~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~ 760 (930)
++++|++|++..+... +..+..+..+++|+.|++.++...+.++. .+..+++|+.|++++|.+.+.
T Consensus 416 ~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-------~~~~l~~L~~L~L~~N~l~~~--- 481 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLS----GTIPSSLGSLSKLRDLKLWLNMLEGEIPQ-------ELMYVKTLETLILDFNDLTGE--- 481 (768)
T ss_dssp GCTTCCEEECCSSEEE----SCCCGGGGGCTTCCEEECCSSCCCSCCCG-------GGGGCTTCCEEECCSSCCCSC---
T ss_pred cCCCCCEEECcCCccc----CcccHHHhcCCCCCEEECCCCcccCcCCH-------HHcCCCCceEEEecCCcccCc---
Confidence 9999999887655332 23466778888888888877776655554 577889999999999988753
Q ss_pred CCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCC-CCCCCCcceeeeccCcCceE
Q 002362 761 RKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP-LGKLPSLEKLSISFMCSVKR 839 (930)
Q Consensus 761 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~ 839 (930)
++..+..+++|+.|++++|.+.+.+|.|++.+++|+.|+|++|.+.+.+|. ++.+++|+.|+|++|.-...
T Consensus 482 --------~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 482 --------IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp --------CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred --------CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence 456677889999999999999977999999999999999999998887776 99999999999998764323
Q ss_pred eCCccccC----------------------------------------------------------------cccccCcc
Q 002362 840 VDNEILGI----------------------------------------------------------------EITIAFPK 855 (930)
Q Consensus 840 ~~~~~~~~----------------------------------------------------------------~~~~~f~~ 855 (930)
++..+... .....+++
T Consensus 554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~ 633 (768)
T 3rgz_A 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633 (768)
T ss_dssp CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence 33222110 00113577
Q ss_pred ccceeeccc-----------cccccceeeeccCCccCCCCCCCCCCCCccEEEEecC
Q 002362 856 LKSLTISWI-----------IMPRLSSLTFDSCPKLKALPDHFHQTTTLKEFNIGWN 901 (930)
Q Consensus 856 L~~L~l~~~-----------~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~n 901 (930)
|+.|++++| .+++|+.|++++|.....+|..+..+++|+.|++++|
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N 690 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC
Confidence 888998887 5789999999999655689999999999999999996
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=7.4e-26 Score=268.65 Aligned_cols=324 Identities=14% Similarity=0.145 Sum_probs=212.0
Q ss_pred CcceeEEEEEecCCcc------------------cccccc--CCCCccEEEEccccccccchhhhHHHHHhhcCCcceEE
Q 002362 528 DEKVRHLLLIVGNGAS------------------FPVSTC--GVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVL 587 (930)
Q Consensus 528 ~~~~r~l~l~~~~~~~------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L 587 (930)
...++.+.+..+.+.. +|..+. .+++|++|.+.+|.... .++..+.++++|++|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT------KLPTFLKALPEMQLI 278 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS------SCCTTTTTCSSCCEE
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc------cChHHHhcCCCCCEE
Confidence 3467777777777666 677766 77888888887775321 123446777788888
Q ss_pred EcCCcccccCCCCCc--ccCcccccC------CCCCeeeccCCccccccc--ccccCCcccEEeccCCCCCccccccccc
Q 002362 588 EFGDWARSLQLGPLT--RIPRNIERL------VHLRYLNLSNQSIRKLPD--TLCELYNLQKLDISCCCKLKELPQGIGK 657 (930)
Q Consensus 588 ~L~~~~~~~~~~~~~--~lp~~i~~L------~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~i~~ 657 (930)
++++|.. +. .+|..++++ ++|++|++++|.++.+|. .++++++|++|++++|.....+| .+..
T Consensus 279 ~Ls~n~~------l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~ 351 (636)
T 4eco_A 279 NVACNRG------ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS 351 (636)
T ss_dssp ECTTCTT------SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE
T ss_pred ECcCCCC------CccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCC
Confidence 8875531 33 467777665 778888888877777777 77778888888888777333777 7777
Q ss_pred cCCcceEeecCcccccccCCcCCCCCC-CCcCCceEeCCCCCcCCCcccccccc--cCCCcCCeeeeecccCCCChhhhh
Q 002362 658 LINMRHLLNYGTISLRYMPVGIGRLTS-LRTLDEFYVSGGGGIDGRKACRLESL--RSLELLQVCGIRRLGNVTDVGEAK 734 (930)
Q Consensus 658 L~~L~~L~l~~~~~~~~~p~~i~~l~~-L~~L~~~~~~~~~~~~~~~~~~l~~L--~~L~~L~~~~~~~~~~~~~~~~~~ 734 (930)
+++|++|++++| .+..+|..++.+++ |++|++..+... . ++..+..+ ++|+.|++.++...+..+.
T Consensus 352 l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~----lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~----- 420 (636)
T 4eco_A 352 EIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLK-Y----IPNIFDAKSVSVMSAIDFSYNEIGSVDGK----- 420 (636)
T ss_dssp EEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSCCS-S----CCSCCCTTCSSCEEEEECCSSCTTTTTTC-----
T ss_pred CCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCcCc-c----cchhhhhcccCccCEEECcCCcCCCcchh-----
Confidence 778888887777 34577777777777 777776655443 1 23333333 2566666666655443333
Q ss_pred hcccc-------CCCCCCeeEEEeeCCCCCCcCCCccchHHHhh-cCCCCCCcceEEEeeccCCCCCCccccc-------
Q 002362 735 RLELD-------KMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLE-FLQPPPNLRKLLIGSYRGKTVFPPWMMS------- 799 (930)
Q Consensus 735 ~~~l~-------~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~p~~~~~------- 799 (930)
.+. .+.+|+.|++++|.+.. ++. .+..+++|++|++++|.+.. +|.++..
T Consensus 421 --~l~~~~~~~~~~~~L~~L~Ls~N~l~~------------lp~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~~~~~~~ 485 (636)
T 4eco_A 421 --NFDPLDPTPFKGINVSSINLSNNQISK------------FPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFK 485 (636)
T ss_dssp --SSCTTCSSCCCCCCEEEEECCSSCCCS------------CCTHHHHTTCCCSEEECCSSCCSB-CCSSSSEETTEECT
T ss_pred --hhcccccccccCCCCCEEECcCCccCc------------CCHHHHccCCCCCEEECCCCCCCC-cCHHHhcccccccc
Confidence 222 45677777777776654 121 22345677777777777764 6654432
Q ss_pred -ccCccEEEeeCCCCCCCCCC-CC--CCCCcceeeeccCcCceEeCCccccCcccccCccccceeecc------c-----
Q 002362 800 -LTNLRSLDLDDCENCEKLPP-LG--KLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISW------I----- 864 (930)
Q Consensus 800 -l~~L~~L~L~~~~~~~~l~~-l~--~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~------~----- 864 (930)
+++|+.|+|++|.+. .+|. +. .+++|+.|+|++|.- +.++..+. .+++|+.|.+++ +
T Consensus 486 ~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l-~~ip~~~~------~l~~L~~L~Ls~N~~ls~N~l~~~ 557 (636)
T 4eco_A 486 NTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPL------NSSTLKGFGIRNQRDAQGNRTLRE 557 (636)
T ss_dssp TGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCC-SSCCCGGG------GCSSCCEEECCSCBCTTCCBCCCC
T ss_pred ccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCC-CCcChhhh------cCCCCCEEECCCCcccccCccccc
Confidence 227777777777665 4444 44 777777777776542 22332221 467777777732 2
Q ss_pred ------cccccceeeeccCCccCCCCCCCCCCCCccEEEEecC
Q 002362 865 ------IMPRLSSLTFDSCPKLKALPDHFHQTTTLKEFNIGWN 901 (930)
Q Consensus 865 ------~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~n 901 (930)
.+++|+.|++++| .+..+|..+. ++|+.|++++|
T Consensus 558 ~p~~l~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N 597 (636)
T 4eco_A 558 WPEGITLCPSLTQLQIGSN-DIRKVNEKIT--PNISVLDIKDN 597 (636)
T ss_dssp CCTTGGGCSSCCEEECCSS-CCCBCCSCCC--TTCCEEECCSC
T ss_pred ChHHHhcCCCCCEEECCCC-cCCccCHhHh--CcCCEEECcCC
Confidence 4789999999999 5699998765 89999999996
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=1.6e-25 Score=269.65 Aligned_cols=328 Identities=13% Similarity=0.155 Sum_probs=234.3
Q ss_pred CcceeEEEEEecCCcc------------------cccccc--CCCCccEEEEccccccccchhhhHHHHHhhcCCcceEE
Q 002362 528 DEKVRHLLLIVGNGAS------------------FPVSTC--GVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVL 587 (930)
Q Consensus 528 ~~~~r~l~l~~~~~~~------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L 587 (930)
...++.|.+..+.+.. +|..+. .+++|+.|.+.+|.... .++..+.++++|++|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~------~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT------QLPDFLYDLPELQSL 520 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC------SCCGGGGGCSSCCEE
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc------cChHHHhCCCCCCEE
Confidence 3568889998888776 777766 88999999998885321 133457888999999
Q ss_pred EcCCcccccCCCCCc--ccCcccccCC-------CCCeeeccCCccccccc--ccccCCcccEEeccCCCCCcccccccc
Q 002362 588 EFGDWARSLQLGPLT--RIPRNIERLV-------HLRYLNLSNQSIRKLPD--TLCELYNLQKLDISCCCKLKELPQGIG 656 (930)
Q Consensus 588 ~L~~~~~~~~~~~~~--~lp~~i~~L~-------~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~i~ 656 (930)
+|++|.. +. .+|..++++. +|++|+|++|.++.+|. .++++++|++|++++|. +..+| .++
T Consensus 521 ~Ls~N~~------lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~ 592 (876)
T 4ecn_A 521 NIACNRG------ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFG 592 (876)
T ss_dssp ECTTCTT------SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCC
T ss_pred ECcCCCC------cccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhc
Confidence 9996541 33 4777776665 89999999999888888 88899999999999888 55888 788
Q ss_pred ccCCcceEeecCcccccccCCcCCCCCC-CCcCCceEeCCCCCcCCCccccccccc--CCCcCCeeeeecccCCCChhhh
Q 002362 657 KLINMRHLLNYGTISLRYMPVGIGRLTS-LRTLDEFYVSGGGGIDGRKACRLESLR--SLELLQVCGIRRLGNVTDVGEA 733 (930)
Q Consensus 657 ~L~~L~~L~l~~~~~~~~~p~~i~~l~~-L~~L~~~~~~~~~~~~~~~~~~l~~L~--~L~~L~~~~~~~~~~~~~~~~~ 733 (930)
.+++|++|++++|. +..+|..++.+++ |+.|++..+... . ++..+..+. +|+.|++.++...+.++.....
T Consensus 593 ~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~-~----lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLK-Y----IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp TTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCCC-S----CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred CCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCCCC-c----CchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 89999999998884 4588888888888 999887766544 2 244444443 3777777776665443321100
Q ss_pred hhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhc-CCCCCCcceEEEeeccCCCCCCccccc--------ccCcc
Q 002362 734 KRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEF-LQPPPNLRKLLIGSYRGKTVFPPWMMS--------LTNLR 804 (930)
Q Consensus 734 ~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~p~~~~~--------l~~L~ 804 (930)
.....+.+|+.|+|++|.+.. ++.. +..+++|+.|+|++|.+.. +|.++.. +++|+
T Consensus 667 --l~~~~~~~L~~L~Ls~N~L~~------------lp~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~ 731 (876)
T 4ecn_A 667 --MDDYKGINASTVTLSYNEIQK------------FPTELFATGSPISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLT 731 (876)
T ss_dssp --TTTCCCCCEEEEECCSSCCCS------------CCHHHHHTTCCCSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCC
T ss_pred --hccccCCCcCEEEccCCcCCc------------cCHHHHccCCCCCEEECCCCcCCc-cChHHhccccccccccCCcc
Confidence 011134578888888887764 2222 2356788888888888775 7766543 23788
Q ss_pred EEEeeCCCCCCCCCC-CC--CCCCcceeeeccCcCceEeCCccccCcccccCccccceeecc------c-----------
Q 002362 805 SLDLDDCENCEKLPP-LG--KLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISW------I----------- 864 (930)
Q Consensus 805 ~L~L~~~~~~~~l~~-l~--~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~------~----------- 864 (930)
.|+|++|.+. .+|. +. .+++|+.|+|++|. ++.++..+. .+++|+.|.+++ |
T Consensus 732 ~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~------~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 732 TIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPL------NSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803 (876)
T ss_dssp EEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGG------GCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred EEECCCCCCc-cchHHhhhccCCCcCEEEeCCCC-CCccchhhh------cCCCCCEEECCCCCCcccccccccChHHHh
Confidence 8888888766 4554 54 78888888888664 222332221 577888888865 2
Q ss_pred cccccceeeeccCCccCCCCCCCCCCCCccEEEEecC
Q 002362 865 IMPRLSSLTFDSCPKLKALPDHFHQTTTLKEFNIGWN 901 (930)
Q Consensus 865 ~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~n 901 (930)
.+++|+.|+|++| .+..+|..+. ++|+.|+|++|
T Consensus 804 ~L~~L~~L~Ls~N-~L~~Ip~~l~--~~L~~LdLs~N 837 (876)
T 4ecn_A 804 TCPSLIQLQIGSN-DIRKVDEKLT--PQLYILDIADN 837 (876)
T ss_dssp GCSSCCEEECCSS-CCCBCCSCCC--SSSCEEECCSC
T ss_pred cCCCCCEEECCCC-CCCccCHhhc--CCCCEEECCCC
Confidence 4789999999999 4599998765 79999999995
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=2.8e-25 Score=267.52 Aligned_cols=321 Identities=14% Similarity=0.195 Sum_probs=248.1
Q ss_pred ccccccCCCCccEEEEccccccccc-----------hhhhHHHHHhh--cCCcceEEEcCCcccccCCCCCcccCccccc
Q 002362 544 FPVSTCGVKRMRSLIIDYSRYFHLY-----------LNGKILERLFR--ESTSLRVLEFGDWARSLQLGPLTRIPRNIER 610 (930)
Q Consensus 544 ~~~~~~~~~~Lr~L~l~~~~~~~~~-----------~~~~~~~~~~~--~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~ 610 (930)
+|..+..+++|++|.+++|.+.... .....++..+. ++++|++|+|++|.. ...+|..+++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l------~~~iP~~l~~ 513 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN------MTQLPDFLYD 513 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT------CCSCCGGGGG
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC------CccChHHHhC
Confidence 5778889999999999999753200 00001233344 999999999997653 3678999999
Q ss_pred CCCCCeeeccCCc-ccc--cccccccCC-------cccEEeccCCCCCccccc--cccccCCcceEeecCcccccccCCc
Q 002362 611 LVHLRYLNLSNQS-IRK--LPDTLCELY-------NLQKLDISCCCKLKELPQ--GIGKLINMRHLLNYGTISLRYMPVG 678 (930)
Q Consensus 611 L~~Lr~L~L~~~~-i~~--lp~~i~~L~-------~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~ 678 (930)
|++|++|+|++|. ++. +|..++++. +|++|++++|. +..+|. .+.++++|++|++++|. +..+| .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~ 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-h
Confidence 9999999999998 884 898877776 99999999998 569999 99999999999999995 45888 8
Q ss_pred CCCCCCCCcCCceEeCCCCCcCCCcccccccccC-CCcCCeeeeecccCCCChhhhhhccccCC--CCCCeeEEEeeCCC
Q 002362 679 IGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRS-LELLQVCGIRRLGNVTDVGEAKRLELDKM--KNLSCLKLLFNKEE 755 (930)
Q Consensus 679 i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~-L~~L~~~~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~L~~~~~~ 755 (930)
++.+++|+.|++..+... .++..+..+++ |+.|++.++... .++. .+..+ ++|+.|++++|.+.
T Consensus 591 ~~~L~~L~~L~Ls~N~l~-----~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~-------~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE-----EIPEDFCAFTDQVEGLGFSHNKLK-YIPN-------IFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp CCTTSEESEEECCSSCCS-----CCCTTSCEECTTCCEEECCSSCCC-SCCS-------CCCTTCSSCEEEEECCSSCTT
T ss_pred hcCCCcceEEECcCCccc-----cchHHHhhccccCCEEECcCCCCC-cCch-------hhhccccCCCCEEECcCCcCC
Confidence 999999999998776554 24666888888 999988887754 4443 33333 45999999999887
Q ss_pred CCCcCCCccchHHHhhcCC--CCCCcceEEEeeccCCCCCCcccc-cccCccEEEeeCCCCCCCCCC-C--------CCC
Q 002362 756 GDGQRRKNEDDQLLLEFLQ--PPPNLRKLLIGSYRGKTVFPPWMM-SLTNLRSLDLDDCENCEKLPP-L--------GKL 823 (930)
Q Consensus 756 ~~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~l~~-l--------~~l 823 (930)
+..+. ++..+. .+++|+.|++++|.+.. +|.++. .+++|+.|+|++|.+. .+|. + +++
T Consensus 658 g~ip~--------l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl 727 (876)
T 4ecn_A 658 SEGRN--------ISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNT 727 (876)
T ss_dssp TTSSS--------CSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTG
T ss_pred Ccccc--------chhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccccccc
Confidence 53110 111222 34689999999999997 888776 8999999999999877 4554 2 234
Q ss_pred CCcceeeeccCcCceEeCCccccCcccccCccccceeeccc----------cccccceeeecc------CCccCCCCCCC
Q 002362 824 PSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWI----------IMPRLSSLTFDS------CPKLKALPDHF 887 (930)
Q Consensus 824 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~----------~lp~L~~L~l~~------c~~L~~lp~~l 887 (930)
++|+.|+|++|. ++.++..+.. ..+++|+.|.+++| .+++|+.|+|++ |.....+|..+
T Consensus 728 ~~L~~L~Ls~N~-L~~lp~~l~~----~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l 802 (876)
T 4ecn_A 728 YLLTTIDLRFNK-LTSLSDDFRA----TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802 (876)
T ss_dssp GGCCEEECCSSC-CCCCCGGGST----TTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred CCccEEECCCCC-CccchHHhhh----ccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence 599999999874 4445544331 16899999999988 578999999987 44456789999
Q ss_pred CCCCCccEEEEecC
Q 002362 888 HQTTTLKEFNIGWN 901 (930)
Q Consensus 888 ~~l~~L~~L~l~~n 901 (930)
..+++|+.|++++|
T Consensus 803 ~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 803 TTCPSLIQLQIGSN 816 (876)
T ss_dssp GGCSSCCEEECCSS
T ss_pred hcCCCCCEEECCCC
Confidence 99999999999995
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=1.6e-25 Score=265.76 Aligned_cols=299 Identities=17% Similarity=0.217 Sum_probs=188.4
Q ss_pred HHHhhcCCcceEEEcCCcccccCCCCCcc------------------cCcccc--cCCCCCeeeccCCccc-cccccccc
Q 002362 575 ERLFRESTSLRVLEFGDWARSLQLGPLTR------------------IPRNIE--RLVHLRYLNLSNQSIR-KLPDTLCE 633 (930)
Q Consensus 575 ~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~------------------lp~~i~--~L~~Lr~L~L~~~~i~-~lp~~i~~ 633 (930)
+..+.++++|++|+|++|. +.. +|..++ ++++|++|+|++|.+. .+|..+++
T Consensus 199 p~~l~~l~~L~~L~Ls~n~-------l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSP-------FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp CGGGGGCTTCCEEEEESCC-------CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CHHHhcccCCCEEECcCCc-------cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 3457889999999999654 344 899988 9999999999999855 78999999
Q ss_pred CCcccEEeccCCC-CCc-ccccccccc------CCcceEeecCcccccccCC--cCCCCCCCCcCCceEeCCCCCcCCCc
Q 002362 634 LYNLQKLDISCCC-KLK-ELPQGIGKL------INMRHLLNYGTISLRYMPV--GIGRLTSLRTLDEFYVSGGGGIDGRK 703 (930)
Q Consensus 634 L~~L~~L~l~~~~-~~~-~lp~~i~~L------~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~ 703 (930)
+++|++|++++|. ... .+|..++.+ ++|++|++++|. +..+|. .++++++|++|++..+... +.+
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~----g~i 346 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLE----GKL 346 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCE----EEC
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCc----cch
Confidence 9999999999997 444 689888887 899999999884 458888 8999999999987665443 223
Q ss_pred ccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCC-CCeeEEEeeCCCCCCcCCC--------------ccchHH
Q 002362 704 ACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKN-LSCLKLLFNKEEGDGQRRK--------------NEDDQL 768 (930)
Q Consensus 704 ~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~L~~~~~~~~~~~~~--------------~~~~~~ 768 (930)
+ .+..+++|+.|++.++... .++. .+..+++ |+.|++++|.+........ +.....
T Consensus 347 p-~~~~l~~L~~L~L~~N~l~-~lp~-------~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~ 417 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAYNQIT-EIPA-------NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV 417 (636)
T ss_dssp C-CCEEEEEESEEECCSSEEE-ECCT-------TSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred h-hhCCCCCCCEEECCCCccc-cccH-------hhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCc
Confidence 4 6667777777776666544 3333 3556666 7777777776653100000 000000
Q ss_pred HhhcCC-------CCCCcceEEEeeccCCCCCCcccc-cccCccEEEeeCCCCCCCCCC--CC-------CCCCcceeee
Q 002362 769 LLEFLQ-------PPPNLRKLLIGSYRGKTVFPPWMM-SLTNLRSLDLDDCENCEKLPP--LG-------KLPSLEKLSI 831 (930)
Q Consensus 769 ~~~~l~-------~~~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~l~~--l~-------~l~~L~~L~L 831 (930)
.+..+. .+++|++|++++|.+.. +|.++. .+++|+.|+|++|.+. .+|. +. ++++|+.|+|
T Consensus 418 ~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~L 495 (636)
T 4eco_A 418 DGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDL 495 (636)
T ss_dssp TTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEEC
T ss_pred chhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEEC
Confidence 122222 33455555665555554 444433 3556666666665544 3332 11 1225666666
Q ss_pred ccCcCceEeCCccccCcccccCccccceeeccc----------cccccceeeecc------CCccCCCCCCCCCCCCccE
Q 002362 832 SFMCSVKRVDNEILGIEITIAFPKLKSLTISWI----------IMPRLSSLTFDS------CPKLKALPDHFHQTTTLKE 895 (930)
Q Consensus 832 ~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~----------~lp~L~~L~l~~------c~~L~~lp~~l~~l~~L~~ 895 (930)
++|. ++.++..+.. ..+++|+.|.+++| .+++|+.|++++ |.....+|..+..+++|++
T Consensus 496 s~N~-l~~lp~~~~~----~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~ 570 (636)
T 4eco_A 496 RFNK-LTKLSDDFRA----TTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570 (636)
T ss_dssp CSSC-CCBCCGGGST----TTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCE
T ss_pred cCCc-CCccChhhhh----ccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCE
Confidence 5543 2233322210 14566777776666 356677777743 3334556666666777777
Q ss_pred EEEecC
Q 002362 896 FNIGWN 901 (930)
Q Consensus 896 L~l~~n 901 (930)
|++++|
T Consensus 571 L~Ls~N 576 (636)
T 4eco_A 571 LQIGSN 576 (636)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 777774
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=6.4e-25 Score=260.88 Aligned_cols=132 Identities=14% Similarity=0.137 Sum_probs=106.0
Q ss_pred cCcceeEEEEEecCCccccc-cccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCccc-
Q 002362 527 FDEKVRHLLLIVGNGASFPV-STCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRI- 604 (930)
Q Consensus 527 ~~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l- 604 (930)
.+..++++.+..+.+..++. .+.++++|++|+++++.+... .+..|.++++|++|+|++|. +..+
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i------~~~~~~~l~~L~~L~Ls~n~-------l~~~~ 96 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI------EDKAWHGLHHLSNLILTGNP-------IQSFS 96 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE------CTTTTTTCTTCCEEECTTCC-------CCCCC
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccccc------CHHHhhchhhcCEeECCCCc-------ccccC
Confidence 56788999998888876544 678899999999998865322 34457889999999999653 4444
Q ss_pred CcccccCCCCCeeeccCCcccccc-cccccCCcccEEeccCCCCCc-cccccccccCCcceEeecCccc
Q 002362 605 PRNIERLVHLRYLNLSNQSIRKLP-DTLCELYNLQKLDISCCCKLK-ELPQGIGKLINMRHLLNYGTIS 671 (930)
Q Consensus 605 p~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~ 671 (930)
|..|+++++|++|++++|.+..+| ..++++++|++|++++|.... .+|..++++++|++|++++|..
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence 788999999999999999988776 678899999999999988433 5788899999999999888743
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=3.8e-24 Score=249.09 Aligned_cols=126 Identities=18% Similarity=0.202 Sum_probs=71.6
Q ss_pred CcceeEEEEEecCCcccc-ccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCc
Q 002362 528 DEKVRHLLLIVGNGASFP-VSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPR 606 (930)
Q Consensus 528 ~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~ 606 (930)
+..++++.+..+.+..++ ..+..+++|++|+++++.+... .+..|.++++|++|+|++| .+..+|.
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~Ls~N-------~l~~lp~ 86 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL------DISVFKFNQELEYLDLSHN-------KLVKISC 86 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE------EGGGGTTCTTCCEEECCSS-------CCCEEEC
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCccCCc------ChHHhhcccCCCEEecCCC-------ceeecCc
Confidence 355666666666655443 3455666666666666653221 2334566666666666633 3445555
Q ss_pred ccccCCCCCeeeccCCcccc--cccccccCCcccEEeccCCCCCccccccccccCCc--ceEeecCccc
Q 002362 607 NIERLVHLRYLNLSNQSIRK--LPDTLCELYNLQKLDISCCCKLKELPQGIGKLINM--RHLLNYGTIS 671 (930)
Q Consensus 607 ~i~~L~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L--~~L~l~~~~~ 671 (930)
. .+++|++|+|++|.++. +|..++++++|++|++++|. +.. ..+..+++| ++|++++|..
T Consensus 87 ~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 87 H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecccc
Confidence 4 56666666666666654 35566666666666666665 322 235555555 6666666543
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=5.6e-24 Score=233.91 Aligned_cols=300 Identities=19% Similarity=0.208 Sum_probs=153.0
Q ss_pred cceeEEEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCccc
Q 002362 529 EKVRHLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNI 608 (930)
Q Consensus 529 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i 608 (930)
..++++.+..+.+..++ .+..+++|++|.+.++.+... .+ +..+++|++|++++|. +..+| .+
T Consensus 44 ~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~------~~--~~~l~~L~~L~L~~n~-------i~~~~-~~ 106 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDI------SP--LSNLVKLTNLYIGTNK-------ITDIS-AL 106 (347)
T ss_dssp TTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCC------GG--GTTCTTCCEEECCSSC-------CCCCG-GG
T ss_pred ccccEEEEeCCccccch-hhhhcCCccEEEccCCccccc------hh--hhcCCcCCEEEccCCc-------ccCch-HH
Confidence 44566666665555432 355566666666666543221 11 5556666666666432 23333 45
Q ss_pred ccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcC
Q 002362 609 ERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTL 688 (930)
Q Consensus 609 ~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 688 (930)
.++++|++|++++|.+..+|. +..+++|++|++++|.....++. +..+++|++|++++|. +..++. ++.+++|++|
T Consensus 107 ~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L 182 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSL 182 (347)
T ss_dssp TTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEE
T ss_pred cCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchh-hccCCCCCEE
Confidence 666666666666666666555 56666666666666654444333 5666666666666652 233332 5555566665
Q ss_pred CceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHH
Q 002362 689 DEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQL 768 (930)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~ 768 (930)
++..+.... ...+..+++|+.|.+.++...... .+..+++|+.|++++|.+...
T Consensus 183 ~l~~n~l~~------~~~~~~l~~L~~L~l~~n~l~~~~---------~~~~~~~L~~L~l~~n~l~~~----------- 236 (347)
T 4fmz_A 183 SLNYNQIED------ISPLASLTSLHYFTAYVNQITDIT---------PVANMTRLNSLKIGNNKITDL----------- 236 (347)
T ss_dssp ECTTSCCCC------CGGGGGCTTCCEEECCSSCCCCCG---------GGGGCTTCCEEECCSSCCCCC-----------
T ss_pred EccCCcccc------cccccCCCccceeecccCCCCCCc---------hhhcCCcCCEEEccCCccCCC-----------
Confidence 544332221 111333333333333322211100 133444555555555444331
Q ss_pred HhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCCCCCCCCcceeeeccCcCceEeCCccccCc
Q 002362 769 LLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPPLGKLPSLEKLSISFMCSVKRVDNEILGIE 848 (930)
Q Consensus 769 ~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 848 (930)
.. +..+++|++|++++|.+.. + ..+..+++|+.|++++|.+.+ ++.++.+++|+.|++++|.- ...+..
T Consensus 237 -~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~----- 305 (347)
T 4fmz_A 237 -SP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQL-GNEDME----- 305 (347)
T ss_dssp -GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCC-CGGGHH-----
T ss_pred -cc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-ChhhcCCCCCCEEECcCCcC-CCcChh-----
Confidence 11 3344455555555554444 2 234445555555555553332 23344455555555544321 000000
Q ss_pred ccccCccccceeeccccccccceeeeccCCccCCCCCCCCCCCCccEEEEecC
Q 002362 849 ITIAFPKLKSLTISWIIMPRLSSLTFDSCPKLKALPDHFHQTTTLKEFNIGWN 901 (930)
Q Consensus 849 ~~~~f~~L~~L~l~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~n 901 (930)
.|. .+|+|+.|++++|+ +..++. +..+++|++|++++|
T Consensus 306 ---~l~----------~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 306 ---VIG----------GLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQ 343 (347)
T ss_dssp ---HHH----------TCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC
T ss_pred ---Hhh----------ccccCCEEEccCCc-cccccC-hhhhhccceeehhhh
Confidence 000 37899999999995 666765 788999999999995
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=1.4e-23 Score=257.98 Aligned_cols=346 Identities=16% Similarity=0.141 Sum_probs=241.3
Q ss_pred ccccccCcceeEEEEEecCCccc-cccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCC
Q 002362 522 NAINSFDEKVRHLLLIVGNGASF-PVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGP 600 (930)
Q Consensus 522 ~~~~~~~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~ 600 (930)
...+..+..+++|.+..+.+..+ +..+..+++|++|+++++... ..+.+..|.++++|++|+|++|.
T Consensus 17 ~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~-----~~i~~~~f~~L~~L~~L~Ls~N~------- 84 (844)
T 3j0a_A 17 TQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP-----LTIDKEAFRNLPNLRILDLGSSK------- 84 (844)
T ss_dssp SCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC-----CEECTTTTSSCTTCCEEECTTCC-------
T ss_pred CCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc-----cccCHHHhcCCCCCCEEECCCCc-------
Confidence 33344778999999999988765 567889999999999988421 12234558899999999999654
Q ss_pred Ccc-cCcccccCCCCCeeeccCCcccc-cccc--cccCCcccEEeccCCCCCccc-cccccccCCcceEeecCccccccc
Q 002362 601 LTR-IPRNIERLVHLRYLNLSNQSIRK-LPDT--LCELYNLQKLDISCCCKLKEL-PQGIGKLINMRHLLNYGTISLRYM 675 (930)
Q Consensus 601 ~~~-lp~~i~~L~~Lr~L~L~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~~~~~ 675 (930)
+.. .|..++++.+|++|+|++|.++. +|.. ++++++|++|++++|...... +..++++++|++|++++|......
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 444 48899999999999999999885 5555 899999999999999844433 357899999999999998655556
Q ss_pred CCcCCCC--CCCCcCCceEeCCCCCcCCCcccccccccC------CCcCCeeeeecccCCCCh-h---------------
Q 002362 676 PVGIGRL--TSLRTLDEFYVSGGGGIDGRKACRLESLRS------LELLQVCGIRRLGNVTDV-G--------------- 731 (930)
Q Consensus 676 p~~i~~l--~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~------L~~L~~~~~~~~~~~~~~-~--------------- 731 (930)
|..++.+ ++|+.|++..+..... .+..+..+.+ |+.|++.++......+.. .
T Consensus 165 ~~~l~~l~~~~L~~L~L~~n~l~~~----~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 165 EHELEPLQGKTLSFFSLAANSLYSR----VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp SGGGHHHHHCSSCCCEECCSBSCCC----CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred HHHcccccCCccceEECCCCccccc----cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 6677766 7888888766544332 1223333332 566665555332221110 0
Q ss_pred -------------hhhhccccC--CCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcc
Q 002362 732 -------------EAKRLELDK--MKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPW 796 (930)
Q Consensus 732 -------------~~~~~~l~~--~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~ 796 (930)
......+.. .++|+.|++++|.+... .+..+..+++|+.|++++|.+.+..|..
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~-----------~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 309 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL-----------NSRVFETLKDLKVLNLAYNKINKIADEA 309 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE-----------CSCCSSSCCCCCEEEEESCCCCEECTTT
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCccccc-----------ChhhhhcCCCCCEEECCCCcCCCCChHH
Confidence 000001111 25788888888776542 2445677888999999988887755777
Q ss_pred cccccCccEEEeeCCCCCCCCCC-CCCCCCcceeeeccCcCceEeCCccccCcccccCccccceeeccc------ccccc
Q 002362 797 MMSLTNLRSLDLDDCENCEKLPP-LGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWI------IMPRL 869 (930)
Q Consensus 797 ~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~------~lp~L 869 (930)
+..+++|+.|+|++|.+....|. ++.+++|+.|++++|. +..++...+ ..+++|+.|.+++| .+|+|
T Consensus 310 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~-----~~l~~L~~L~Ls~N~l~~i~~~~~L 383 (844)
T 3j0a_A 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTF-----KFLEKLQTLDLRDNALTTIHFIPSI 383 (844)
T ss_dssp TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCS-----CSCCCCCEEEEETCCSCCCSSCCSC
T ss_pred hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhh-----cCCCCCCEEECCCCCCCcccCCCCc
Confidence 88888999999998877665454 8888899999998763 333332222 25788888888887 36778
Q ss_pred ceeeeccCCccCCCCCC----------------------CCCCCCccEEEEecC
Q 002362 870 SSLTFDSCPKLKALPDH----------------------FHQTTTLKEFNIGWN 901 (930)
Q Consensus 870 ~~L~l~~c~~L~~lp~~----------------------l~~l~~L~~L~l~~n 901 (930)
+.|.+++| .+..+|.. +..+++|+.|++++|
T Consensus 384 ~~L~l~~N-~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N 436 (844)
T 3j0a_A 384 PDIFLSGN-KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN 436 (844)
T ss_dssp SEEEEESC-CCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC
T ss_pred chhccCCC-CcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCC
Confidence 88888877 45566543 235788888888886
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=5.4e-24 Score=252.94 Aligned_cols=339 Identities=14% Similarity=0.074 Sum_probs=207.1
Q ss_pred cCcceeEEEEEecCCccc-cccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccC
Q 002362 527 FDEKVRHLLLIVGNGASF-PVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIP 605 (930)
Q Consensus 527 ~~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp 605 (930)
.+..++++.+..+.+..+ +..+..+++|++|+++++.+.. ..+..|.++++|++|+|++|... ...|
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~Ls~n~l~------~~~~ 98 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW------IHEDTFQSQHRLDTLVLTANPLI------FMAE 98 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE------ECTTTTTTCTTCCEEECTTCCCS------EECT
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccce------eChhhccCccccCeeeCCCCccc------ccCh
Confidence 667899999999988766 5578899999999999986532 23455889999999999965432 3347
Q ss_pred cccccCCCCCeeeccCCccccc-ccccccCCcccEEeccCCCCCccc-cccccccCCcceEeecCcccccccCCcCCCCC
Q 002362 606 RNIERLVHLRYLNLSNQSIRKL-PDTLCELYNLQKLDISCCCKLKEL-PQGIGKLINMRHLLNYGTISLRYMPVGIGRLT 683 (930)
Q Consensus 606 ~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~ 683 (930)
..++++++|++|++++|.++.+ |..++++++|++|++++|. +..+ +..+..+++|++|++++|......|..++.++
T Consensus 99 ~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 177 (606)
T 3t6q_A 99 TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177 (606)
T ss_dssp TTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT
T ss_pred hhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhc
Confidence 7899999999999999999987 6778999999999999998 5544 23344599999999999854444456678888
Q ss_pred CCC--cCCceEeCCCCCcCCCccccccc-------------------------------------------------cc-
Q 002362 684 SLR--TLDEFYVSGGGGIDGRKACRLES-------------------------------------------------LR- 711 (930)
Q Consensus 684 ~L~--~L~~~~~~~~~~~~~~~~~~l~~-------------------------------------------------L~- 711 (930)
+|+ +|++..+...... +..+.. +.
T Consensus 178 ~L~~l~L~l~~n~l~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~ 253 (606)
T 3t6q_A 178 QATNLSLNLNGNDIAGIE----PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253 (606)
T ss_dssp TCCSEEEECTTCCCCEEC----TTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG
T ss_pred ccceeEEecCCCccCccC----hhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhc
Confidence 888 4544333222110 111100 00
Q ss_pred -CCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCC
Q 002362 712 -SLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGK 790 (930)
Q Consensus 712 -~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 790 (930)
+|+.|++.++......+ ..+..+++|+.|++++|.+.. ++..+..+++|++|++++|.+.
T Consensus 254 ~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~l~~n~l~~------------lp~~l~~l~~L~~L~l~~n~l~ 314 (606)
T 3t6q_A 254 MSVESINLQKHYFFNISS-------NTFHCFSGLQELDLTATHLSE------------LPSGLVGLSTLKKLVLSANKFE 314 (606)
T ss_dssp SEEEEEECTTCCCSSCCT-------TTTTTCTTCSEEECTTSCCSC------------CCSSCCSCTTCCEEECTTCCCS
T ss_pred CceeEEEeecCccCccCH-------HHhccccCCCEEeccCCccCC------------CChhhcccccCCEEECccCCcC
Confidence 11111111111111111 135556777777777776654 3445556666666666666665
Q ss_pred CCCCcccccccCccEEEeeCCCCCCCCCC--CCCCCCcceeeeccCcCceEe--CCccc----------------cC--c
Q 002362 791 TVFPPWMMSLTNLRSLDLDDCENCEKLPP--LGKLPSLEKLSISFMCSVKRV--DNEIL----------------GI--E 848 (930)
Q Consensus 791 ~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~--~~~~~----------------~~--~ 848 (930)
...|..+..+++|+.|++++|.....+|. ++.+++|+.|++++|.-.... +..+. +. .
T Consensus 315 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 394 (606)
T 3t6q_A 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394 (606)
T ss_dssp BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT
T ss_pred cCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH
Confidence 53355566666666666666655544443 556666666666654321111 11000 00 0
Q ss_pred ccccCccccceeeccc------------cccccceeeeccCCccCCCCCCCCCCCCccEEEEecC
Q 002362 849 ITIAFPKLKSLTISWI------------IMPRLSSLTFDSCPKLKALPDHFHQTTTLKEFNIGWN 901 (930)
Q Consensus 849 ~~~~f~~L~~L~l~~~------------~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~n 901 (930)
....+++|+.|.++++ .+++|+.|++++|......|..+..+++|++|++++|
T Consensus 395 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459 (606)
T ss_dssp TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTC
T ss_pred HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCC
Confidence 0013455666655554 2456666666666433334555666667777777663
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=1.9e-24 Score=247.29 Aligned_cols=357 Identities=16% Similarity=0.128 Sum_probs=233.6
Q ss_pred CccccccCcceeEEEEEecCCccc-cccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCC
Q 002362 521 LNAINSFDEKVRHLLLIVGNGASF-PVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLG 599 (930)
Q Consensus 521 ~~~~~~~~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~ 599 (930)
....+..+..++++.+..+.+..+ +..+..+++|++|.+.++... ....+..|.++++|++|+|++|.
T Consensus 22 l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~-----~~i~~~~~~~l~~L~~L~Ls~n~------ 90 (455)
T 3v47_A 22 LHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG-----LVIRNNTFRGLSSLIILKLDYNQ------ 90 (455)
T ss_dssp CSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT-----CEECTTTTTTCTTCCEEECTTCT------
T ss_pred cccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCccc-----ceECcccccccccCCEEeCCCCc------
Confidence 333344667888888888877765 556778888888888887532 11223457788888899888653
Q ss_pred CCcc-cCcccccCCCCCeeeccCCcccc-cccc--cccCCcccEEeccCCCCCcccccc-ccccCCcceEeecCcccccc
Q 002362 600 PLTR-IPRNIERLVHLRYLNLSNQSIRK-LPDT--LCELYNLQKLDISCCCKLKELPQG-IGKLINMRHLLNYGTISLRY 674 (930)
Q Consensus 600 ~~~~-lp~~i~~L~~Lr~L~L~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~ 674 (930)
+.. .|..++++++|++|+|++|.++. +|.. +.++++|++|++++|......|.. +..+++|++|++++|.....
T Consensus 91 -l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 91 -FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp -TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred -cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 333 47788888889999998888874 4444 788888888988888844444655 78888888888888855455
Q ss_pred cCCcCCCC--CCCCcCCceEeCCCCCcCCCcc----cccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeE
Q 002362 675 MPVGIGRL--TSLRTLDEFYVSGGGGIDGRKA----CRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLK 748 (930)
Q Consensus 675 ~p~~i~~l--~~L~~L~~~~~~~~~~~~~~~~----~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 748 (930)
.|..++.+ .+|+.|++..+........... ..+..+++|+.|++.++...+..+. .. .......+|+.|+
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~---~~-~~~~~~~~L~~L~ 245 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK---RF-FDAIAGTKIQSLI 245 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH---HH-HHHTTTCCEEEEE
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh---hh-hccccccceeeEe
Confidence 55556554 4566665544332221000000 1122344555555555443221111 11 1112236777777
Q ss_pred EEeeCCCCCCcCCCc--cchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCC-CCCCCCC
Q 002362 749 LLFNKEEGDGQRRKN--EDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLP-PLGKLPS 825 (930)
Q Consensus 749 L~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~ 825 (930)
++.|........... ......... ...++|+.|++++|.+.+..|.++..+++|+.|+|++|.+.+..| .++.+++
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 324 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKG-LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGG-GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred eccccccccccchhhhccCccccccc-ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCccc
Confidence 776654331100000 000000000 124689999999999888678888899999999999998776655 4888999
Q ss_pred cceeeeccCcCceEeCCccccCcccccCccccceeeccc-----------cccccceeeeccCCccCCCCCC-CCCCCCc
Q 002362 826 LEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWI-----------IMPRLSSLTFDSCPKLKALPDH-FHQTTTL 893 (930)
Q Consensus 826 L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~-----------~lp~L~~L~l~~c~~L~~lp~~-l~~l~~L 893 (930)
|+.|+|++|. ++.+.....+ .+++|+.|++++| .+++|+.|++++| .++.+|.. +..+++|
T Consensus 325 L~~L~Ls~N~-l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 325 LLKLNLSQNF-LGSIDSRMFE-----NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSL 397 (455)
T ss_dssp CCEEECCSSC-CCEECGGGGT-----TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred CCEEECCCCc-cCCcChhHhc-----CcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcc
Confidence 9999998774 3433322222 6789999999887 5789999999998 67778764 5789999
Q ss_pred cEEEEecC
Q 002362 894 KEFNIGWN 901 (930)
Q Consensus 894 ~~L~l~~n 901 (930)
++|++++|
T Consensus 398 ~~L~l~~N 405 (455)
T 3v47_A 398 QKIWLHTN 405 (455)
T ss_dssp CEEECCSS
T ss_pred cEEEccCC
Confidence 99999987
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.4e-23 Score=234.54 Aligned_cols=293 Identities=19% Similarity=0.143 Sum_probs=224.0
Q ss_pred CCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccC-cccccCCCCCeeeccCCcccccc
Q 002362 550 GVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIP-RNIERLVHLRYLNLSNQSIRKLP 628 (930)
Q Consensus 550 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~lp 628 (930)
.+++++.|.+.++.... .++.++..+++|++|+|++| .+..+| ..++.+++|++|+|++|.++.+|
T Consensus 43 ~l~~l~~l~l~~~~l~~------l~~~~~~~l~~L~~L~L~~n-------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRK------LPAALLDSFRQVELLNLNDL-------QIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 109 (390)
T ss_dssp GGCCCSEEEEESCEESE------ECTHHHHHCCCCSEEECTTS-------CCCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ccCCceEEEecCCchhh------CChhHhcccccCcEEECCCC-------cccccChhhccCCCCcCEEECCCCCCCcCC
Confidence 46889999998885432 24566888999999999954 445554 47899999999999999999875
Q ss_pred c-ccccCCcccEEeccCCCCCcccccc-ccccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCcccc
Q 002362 629 D-TLCELYNLQKLDISCCCKLKELPQG-IGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACR 706 (930)
Q Consensus 629 ~-~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~ 706 (930)
. .++++++|++|++++|. +..+|.. +..+++|++|++++|......|..++.+++|++|++..+.... ..
T Consensus 110 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~ 181 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-------VD 181 (390)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-------CC
T ss_pred HHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-------cc
Confidence 4 57899999999999998 7788876 4889999999999985444445568899999999877654432 23
Q ss_pred cccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEee
Q 002362 707 LESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGS 786 (930)
Q Consensus 707 l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 786 (930)
+..+++|+.|++.++... .+....+|+.|++++|.+.. ++ ...+++|+.|++++
T Consensus 182 ~~~l~~L~~L~l~~n~l~------------~~~~~~~L~~L~l~~n~l~~------------~~--~~~~~~L~~L~l~~ 235 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLS------------TLAIPIAVEELDASHNSINV------------VR--GPVNVELTILKLQH 235 (390)
T ss_dssp GGGCTTCSEEECCSSCCS------------EEECCSSCSEEECCSSCCCE------------EE--CCCCSSCCEEECCS
T ss_pred cccccccceeeccccccc------------ccCCCCcceEEECCCCeeee------------cc--ccccccccEEECCC
Confidence 556666766665554321 23344689999999887764 11 12357899999999
Q ss_pred ccCCCCCCcccccccCccEEEeeCCCCCCCCCC-CCCCCCcceeeeccCcCceEeCCccccCcccccCccccceeeccc-
Q 002362 787 YRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP-LGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWI- 864 (930)
Q Consensus 787 ~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~- 864 (930)
|.+.+ +.++..+++|+.|+|++|.+.+..|. ++.+++|+.|+|++|. ++.++... ..+++|+.|.+++|
T Consensus 236 n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~------~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 236 NNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG------QPIPTLKVLDLSHNH 306 (390)
T ss_dssp SCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSS------SCCTTCCEEECCSSC
T ss_pred CCCcc--cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCccc------CCCCCCCEEECCCCc
Confidence 99887 46888999999999999987766554 8889999999998764 44433222 26889999999888
Q ss_pred ---------cccccceeeeccCCccCCCCCCCCCCCCccEEEEecC
Q 002362 865 ---------IMPRLSSLTFDSCPKLKALPDHFHQTTTLKEFNIGWN 901 (930)
Q Consensus 865 ---------~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~n 901 (930)
.+++|+.|++++| .+..+| +..+++|++|++++|
T Consensus 307 l~~~~~~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 307 LLHVERNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp CCCCGGGHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSS
T ss_pred ceecCccccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCC
Confidence 4789999999999 577776 677899999999997
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=3.5e-23 Score=242.98 Aligned_cols=141 Identities=17% Similarity=0.128 Sum_probs=76.7
Q ss_pred eEEEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCccc-Cccccc
Q 002362 532 RHLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRI-PRNIER 610 (930)
Q Consensus 532 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~ 610 (930)
+++.+..+.+..+|..+. +++++|+++++.+... .+..|.++++|++|+|++| .+..+ |..+++
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~------~~~~~~~l~~L~~L~Ls~N-------~l~~~~~~~~~~ 98 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISEL------RMPDISFLSELRVLRLSHN-------RIRSLDFHVFLF 98 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCC------CGGGTTTCTTCCEEECCSC-------CCCEECTTTTTT
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCCcccc------ChhhhccCCCccEEECCCC-------CCCcCCHHHhCC
Confidence 445555555554444332 5666666666653221 2233566666666666643 23333 455666
Q ss_pred CCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccc--cccccccCCcceEeecCcccccccCCcCCCCCCC--C
Q 002362 611 LVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKEL--PQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSL--R 686 (930)
Q Consensus 611 L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~l--p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L--~ 686 (930)
+++|++|+|++|.++.+|.. .+++|++|++++|. +..+ |..++++++|++|++++|.. .. ..++.+++| +
T Consensus 99 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l-~~--~~~~~l~~L~L~ 172 (562)
T 3a79_B 99 NQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKF-RQ--LDLLPVAHLHLS 172 (562)
T ss_dssp CTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBC-CT--TTTGGGTTSCEE
T ss_pred CCCCCEEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcc-cc--Cchhhhhhceee
Confidence 66666666666666666655 56666666666666 3333 35566666666666666532 21 233334444 5
Q ss_pred cCCceEe
Q 002362 687 TLDEFYV 693 (930)
Q Consensus 687 ~L~~~~~ 693 (930)
+|++..+
T Consensus 173 ~L~L~~n 179 (562)
T 3a79_B 173 CILLDLV 179 (562)
T ss_dssp EEEEEES
T ss_pred EEEeecc
Confidence 5555444
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=4.9e-24 Score=251.50 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=110.3
Q ss_pred cCcceeEEEEEecCCcccc-ccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccC
Q 002362 527 FDEKVRHLLLIVGNGASFP-VSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIP 605 (930)
Q Consensus 527 ~~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp 605 (930)
.+..++++.+..+.+..++ ..+..+++|++|+++++.+... .+..|.++++|++|+|++| .+..+|
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i------~~~~~~~l~~L~~L~L~~n-------~l~~~~ 92 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI------EDGAYQSLSHLSTLILTGN-------PIQSLA 92 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEE------CTTTTTTCTTCCEEECTTC-------CCCEEC
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCcc------CcccccCchhCCEEeCcCC-------cCCccC
Confidence 5678899999888877653 4678899999999999864322 3445788999999999955 344444
Q ss_pred -cccccCCCCCeeeccCCccccccc-ccccCCcccEEeccCCCCCc-cccccccccCCcceEeecCcccccccCCcCCCC
Q 002362 606 -RNIERLVHLRYLNLSNQSIRKLPD-TLCELYNLQKLDISCCCKLK-ELPQGIGKLINMRHLLNYGTISLRYMPVGIGRL 682 (930)
Q Consensus 606 -~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l 682 (930)
..|+++.+|++|++++|.++.+|. .++++++|++|++++|.... .+|..++++++|++|++++|......|..++.+
T Consensus 93 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 172 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (570)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHH
T ss_pred HhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccch
Confidence 678889999999999998888876 68889999999999887433 478888889999999988884433333445555
Q ss_pred CCC
Q 002362 683 TSL 685 (930)
Q Consensus 683 ~~L 685 (930)
++|
T Consensus 173 ~~L 175 (570)
T 2z63_A 173 HQM 175 (570)
T ss_dssp HTC
T ss_pred hcc
Confidence 544
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1.9e-23 Score=239.08 Aligned_cols=309 Identities=18% Similarity=0.228 Sum_probs=175.1
Q ss_pred ceeEEEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccc
Q 002362 530 KVRHLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIE 609 (930)
Q Consensus 530 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~ 609 (930)
.++.+.+..+.+..++ .+..+++|++|+++++..... .+ +.++++|++|++++| .+..++. ++
T Consensus 47 ~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~------~~--~~~l~~L~~L~l~~n-------~l~~~~~-~~ 109 (466)
T 1o6v_A 47 QVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDI------TP--LKNLTKLVDILMNNN-------QIADITP-LA 109 (466)
T ss_dssp TCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCC------GG--GTTCTTCCEEECCSS-------CCCCCGG-GT
T ss_pred cccEEecCCCCCccCc-chhhhcCCCEEECCCCccCCc------hh--hhccccCCEEECCCC-------ccccChh-hc
Confidence 4555655555554433 345566666666666643221 11 555666666666643 2333333 56
Q ss_pred cCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEee---------------------cC
Q 002362 610 RLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLN---------------------YG 668 (930)
Q Consensus 610 ~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l---------------------~~ 668 (930)
++++|++|++++|.++.+|. +.++++|++|++++|. +..+|. +..+++|++|++ ++
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~ 186 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 186 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCS
T ss_pred CCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecCCcccCchhhccCCCCCEEECcC
Confidence 66666666666666666554 5666666666666665 444442 455555555555 44
Q ss_pred cccccccCCcCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeE
Q 002362 669 TISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLK 748 (930)
Q Consensus 669 ~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 748 (930)
|. +..++ .++.+++|++|++..+.... ...+..+++|+.|++.++.... + ..+..+++|+.|+
T Consensus 187 n~-l~~~~-~l~~l~~L~~L~l~~n~l~~------~~~~~~l~~L~~L~l~~n~l~~-~--------~~l~~l~~L~~L~ 249 (466)
T 1o6v_A 187 NK-VSDIS-VLAKLTNLESLIATNNQISD------ITPLGILTNLDELSLNGNQLKD-I--------GTLASLTNLTDLD 249 (466)
T ss_dssp SC-CCCCG-GGGGCTTCSEEECCSSCCCC------CGGGGGCTTCCEEECCSSCCCC-C--------GGGGGCTTCSEEE
T ss_pred Cc-CCCCh-hhccCCCCCEEEecCCcccc------cccccccCCCCEEECCCCCccc-c--------hhhhcCCCCCEEE
Confidence 42 22222 23444444444433322221 1113334444444433332211 1 1244556666666
Q ss_pred EEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCCCCCCCCcce
Q 002362 749 LLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPPLGKLPSLEK 828 (930)
Q Consensus 749 L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 828 (930)
+++|.+... . .+..+++|+.|++++|.+.+ +|. +..+++|+.|+|++|.+.+ +++++.+++|+.
T Consensus 250 l~~n~l~~~------------~-~~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~ 313 (466)
T 1o6v_A 250 LANNQISNL------------A-PLSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLED-ISPISNLKNLTY 313 (466)
T ss_dssp CCSSCCCCC------------G-GGTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSC-CGGGGGCTTCSE
T ss_pred CCCCccccc------------h-hhhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccC-chhhcCCCCCCE
Confidence 666665541 1 15566778888888777776 444 6677788888888776554 444777788888
Q ss_pred eeeccCcCceEeCCccccCcccccCccccceeeccc---------cccccceeeeccCCccCCCCCCCCCCCCccEEEEe
Q 002362 829 LSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWI---------IMPRLSSLTFDSCPKLKALPDHFHQTTTLKEFNIG 899 (930)
Q Consensus 829 L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~---------~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~ 899 (930)
|+|++|. +. +......+++|+.|.+++| .+++|+.|++++| .+..++. +..+++|+.|+++
T Consensus 314 L~L~~n~-l~-------~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 314 LTLYFNN-IS-------DISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLN 383 (466)
T ss_dssp EECCSSC-CS-------CCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCBCGG-GTTCTTCCEEECC
T ss_pred EECcCCc-CC-------CchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCC-ccCccch-hhcCCCCCEEecc
Confidence 8887663 21 1111226788888888877 5788888888888 4555554 7788889999888
Q ss_pred cC
Q 002362 900 WN 901 (930)
Q Consensus 900 ~n 901 (930)
+|
T Consensus 384 ~n 385 (466)
T 1o6v_A 384 DQ 385 (466)
T ss_dssp CE
T ss_pred CC
Confidence 84
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.9e-23 Score=246.64 Aligned_cols=293 Identities=19% Similarity=0.149 Sum_probs=229.1
Q ss_pred CCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccC-cccccCCCCCeeeccCCcccccc
Q 002362 550 GVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIP-RNIERLVHLRYLNLSNQSIRKLP 628 (930)
Q Consensus 550 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~lp 628 (930)
.+.+++.+.+.++... ..++.+|..+++|++|+|++| .+..+| ..|+.+++|++|+|++|.++.+|
T Consensus 49 ~l~~l~~l~l~~~~l~------~lp~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 115 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR------KLPAALLDSFRQVELLNLNDL-------QIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 115 (597)
T ss_dssp GGCCCSEEEESSCEES------EECTHHHHHCCCCSEEECTTS-------CCCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cCCCceEEEeeCCCCC------CcCHHHHccCCCCcEEECCCC-------CCCCCChHHhcCCCCCCEEECCCCcCCCCC
Confidence 4678999999988543 235667889999999999965 445554 58999999999999999999886
Q ss_pred cc-cccCCcccEEeccCCCCCcccccc-ccccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCcccc
Q 002362 629 DT-LCELYNLQKLDISCCCKLKELPQG-IGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACR 706 (930)
Q Consensus 629 ~~-i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~ 706 (930)
.. ++++++|++|++++|. +..+|.. ++.+++|++|++++|......|..++.+++|++|++..+.... ..
T Consensus 116 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------~~ 187 (597)
T 3oja_B 116 PHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-------VD 187 (597)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-------CC
T ss_pred HHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-------cC
Confidence 64 6899999999999998 7778776 4899999999999995545555679999999999977654432 23
Q ss_pred cccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEee
Q 002362 707 LESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGS 786 (930)
Q Consensus 707 l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 786 (930)
+..+++|+.|++.++... .+....+|+.|++++|.+.. ++. ..+++|+.|++++
T Consensus 188 ~~~l~~L~~L~l~~n~l~------------~l~~~~~L~~L~ls~n~l~~------------~~~--~~~~~L~~L~L~~ 241 (597)
T 3oja_B 188 LSLIPSLFHANVSYNLLS------------TLAIPIAVEELDASHNSINV------------VRG--PVNVELTILKLQH 241 (597)
T ss_dssp GGGCTTCSEEECCSSCCS------------EEECCTTCSEEECCSSCCCE------------EEC--SCCSCCCEEECCS
T ss_pred hhhhhhhhhhhcccCccc------------cccCCchhheeeccCCcccc------------ccc--ccCCCCCEEECCC
Confidence 556677776666554331 23445689999999988764 121 1246899999999
Q ss_pred ccCCCCCCcccccccCccEEEeeCCCCCCCCCC-CCCCCCcceeeeccCcCceEeCCccccCcccccCccccceeeccc-
Q 002362 787 YRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP-LGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWI- 864 (930)
Q Consensus 787 ~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~- 864 (930)
|.+.+ +.++..+++|+.|+|++|.+.+..|. ++.+++|+.|+|++|. +..++..+ ..+|+|+.|.+++|
T Consensus 242 n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~------~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 242 NNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG------QPIPTLKVLDLSHNH 312 (597)
T ss_dssp SCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSS------SCCTTCCEEECCSSC
T ss_pred CCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCccc------ccCCCCcEEECCCCC
Confidence 99887 67889999999999999988776554 8999999999999764 43343222 25899999999988
Q ss_pred ---------cccccceeeeccCCccCCCCCCCCCCCCccEEEEecC
Q 002362 865 ---------IMPRLSSLTFDSCPKLKALPDHFHQTTTLKEFNIGWN 901 (930)
Q Consensus 865 ---------~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~n 901 (930)
.+++|+.|+|++| .+..+| +..+++|+.|++++|
T Consensus 313 l~~i~~~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 313 LLHVERNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHN 355 (597)
T ss_dssp CCCCGGGHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSS
T ss_pred CCccCcccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCC
Confidence 4789999999999 577776 677899999999996
No 22
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=4.9e-23 Score=233.55 Aligned_cols=301 Identities=17% Similarity=0.151 Sum_probs=207.9
Q ss_pred cceeEEEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCccc
Q 002362 529 EKVRHLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNI 608 (930)
Q Consensus 529 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i 608 (930)
..++++.+..+.+..++ .+..+++|++|.++++.+... + +..+++|++|++++|. +..+| +
T Consensus 42 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~-------~--~~~l~~L~~L~Ls~N~-------l~~~~--~ 102 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTL-------D--LSQNTNLTYLACDSNK-------LTNLD--V 102 (457)
T ss_dssp TTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCC-------C--CTTCTTCSEEECCSSC-------CSCCC--C
T ss_pred CCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeE-------c--cccCCCCCEEECcCCC-------Cceee--c
Confidence 45777777777766654 567788888888888764321 1 6677888888888553 34444 7
Q ss_pred ccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcC
Q 002362 609 ERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTL 688 (930)
Q Consensus 609 ~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 688 (930)
+++++|++|++++|.++.+| ++.+++|++|++++|. +..+| ++.+++|++|++++|..+..+ .++.+++|+.|
T Consensus 103 ~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp TTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 78888888888888888775 7788888888888887 55554 777888888888887555555 46778888888
Q ss_pred CceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHH
Q 002362 689 DEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQL 768 (930)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~ 768 (930)
++..+.... ++ +..+++|+.|++.++..... .+..+++|+.|++++|.+.+
T Consensus 176 ~ls~n~l~~-----l~--l~~l~~L~~L~l~~N~l~~~----------~l~~l~~L~~L~Ls~N~l~~------------ 226 (457)
T 3bz5_A 176 DCSFNKITE-----LD--VSQNKLLNRLNCDTNNITKL----------DLNQNIQLTFLDCSSNKLTE------------ 226 (457)
T ss_dssp ECCSSCCCC-----CC--CTTCTTCCEEECCSSCCSCC----------CCTTCTTCSEEECCSSCCSC------------
T ss_pred ECCCCccce-----ec--cccCCCCCEEECcCCcCCee----------ccccCCCCCEEECcCCcccc------------
Confidence 776554432 11 55666666666655543221 25567888888888887765
Q ss_pred HhhcCCCCCCcceEEEeeccCCCCCC-ccccccc-------CccEEEeeCCCCCCCCCCCCCCCCcceeeeccCcCceEe
Q 002362 769 LLEFLQPPPNLRKLLIGSYRGKTVFP-PWMMSLT-------NLRSLDLDDCENCEKLPPLGKLPSLEKLSISFMCSVKRV 840 (930)
Q Consensus 769 ~~~~l~~~~~L~~L~l~~~~~~~~~p-~~~~~l~-------~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~ 840 (930)
++ +..+++|+.|++++|.+.+ +| ..+.++. +|+.|++++|...+.+| ++.+++|+.|++++|..+..+
T Consensus 227 ip--~~~l~~L~~L~l~~N~l~~-~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 227 ID--VTPLTQLTYFDCSVNPLTE-LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp CC--CTTCTTCSEEECCSSCCSC-CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEE
T ss_pred cC--ccccCCCCEEEeeCCcCCC-cCHHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCccccee
Confidence 22 5667888888888888777 44 2222222 34455555555444444 567788888888887765544
Q ss_pred CCccccCcccccCccccceeeccccccccceeeeccCCccCCCCCCCCCCCCccEEEEecCc
Q 002362 841 DNEILGIEITIAFPKLKSLTISWIIMPRLSSLTFDSCPKLKALPDHFHQTTTLKEFNIGWNC 902 (930)
Q Consensus 841 ~~~~~~~~~~~~f~~L~~L~l~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~nc 902 (930)
+. .+++|+.|.+++ +|+|+.|++++| .++.+| +..+++|+.|++++|.
T Consensus 303 ~~---------~~~~L~~L~l~~--~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 303 DC---------QAAGITELDLSQ--NPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp EC---------TTCCCSCCCCTT--CTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred cc---------CCCcceEechhh--cccCCEEECCCC-cccccc--cccCCcCcEEECCCCC
Confidence 42 356777777776 588999999988 677775 8889999999999873
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=4.3e-23 Score=237.34 Aligned_cols=306 Identities=20% Similarity=0.148 Sum_probs=220.6
Q ss_pred ecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCccc-CcccccCCCCCe
Q 002362 538 VGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRI-PRNIERLVHLRY 616 (930)
Q Consensus 538 ~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~L~~Lr~ 616 (930)
...+..+|..+ .++++.|++.++.+... .+..|.++++|++|+|++|. +..+ |..++++++|++
T Consensus 20 ~~~l~~ip~~~--~~~l~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n~-------i~~~~~~~~~~l~~L~~ 84 (477)
T 2id5_A 20 RKRFVAVPEGI--PTETRLLDLGKNRIKTL------NQDEFASFPHLEELELNENI-------VSAVEPGAFNNLFNLRT 84 (477)
T ss_dssp SCCCSSCCSCC--CTTCSEEECCSSCCCEE------CTTTTTTCTTCCEEECTTSC-------CCEECTTTTTTCTTCCE
T ss_pred CCCcCcCCCCC--CCCCcEEECCCCccceE------CHhHccCCCCCCEEECCCCc-------cCEeChhhhhCCccCCE
Confidence 33444445433 36889999998875432 23457889999999999653 4444 778999999999
Q ss_pred eeccCCcccccccc-cccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCC
Q 002362 617 LNLSNQSIRKLPDT-LCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSG 695 (930)
Q Consensus 617 L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~ 695 (930)
|+|++|.++.+|.. +.++++|++|++++|......|..+..+++|++|++++|......|..++.+++|++|++..+..
T Consensus 85 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 85 LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp EECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred EECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 99999999988864 68899999999999985556677889999999999999855455566788999999998876644
Q ss_pred CCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCC
Q 002362 696 GGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQP 775 (930)
Q Consensus 696 ~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~ 775 (930)
.. .....+..+++|+.|++.++......+. .+..+++|+.|++++|..... ++.....
T Consensus 165 ~~----~~~~~l~~l~~L~~L~l~~n~i~~~~~~-------~~~~l~~L~~L~l~~~~~~~~-----------~~~~~~~ 222 (477)
T 2id5_A 165 TS----IPTEALSHLHGLIVLRLRHLNINAIRDY-------SFKRLYRLKVLEISHWPYLDT-----------MTPNCLY 222 (477)
T ss_dssp SS----CCHHHHTTCTTCCEEEEESCCCCEECTT-------CSCSCTTCCEEEEECCTTCCE-----------ECTTTTT
T ss_pred cc----cChhHhcccCCCcEEeCCCCcCcEeChh-------hcccCcccceeeCCCCccccc-----------cCccccc
Confidence 32 1233466777777777766654333222 567788899999988765432 2333334
Q ss_pred CCCcceEEEeeccCCCCCC-cccccccCccEEEeeCCCCCCCCCC-CCCCCCcceeeeccCcCceEeCCccccCcccccC
Q 002362 776 PPNLRKLLIGSYRGKTVFP-PWMMSLTNLRSLDLDDCENCEKLPP-LGKLPSLEKLSISFMCSVKRVDNEILGIEITIAF 853 (930)
Q Consensus 776 ~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f 853 (930)
..+|++|++++|.+.. +| ..+..+++|+.|+|++|.+....+. +..+++|+.|+|++|. +..+... .|
T Consensus 223 ~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--------~~ 292 (477)
T 2id5_A 223 GLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPY--------AF 292 (477)
T ss_dssp TCCCSEEEEESSCCCS-CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTT--------TB
T ss_pred CccccEEECcCCcccc-cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHH--------Hh
Confidence 4589999999998887 66 4577889999999999876654443 8888999999998664 2222211 11
Q ss_pred ccccceeeccccccccceeeeccCCccCCCCC-CCCCCCCccEEEEecC
Q 002362 854 PKLKSLTISWIIMPRLSSLTFDSCPKLKALPD-HFHQTTTLKEFNIGWN 901 (930)
Q Consensus 854 ~~L~~L~l~~~~lp~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~n 901 (930)
. .+++|+.|+|++| .++.+|. .+..+++|++|++++|
T Consensus 293 ~----------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 293 R----------GLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp T----------TCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred c----------CcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence 1 2677888888887 6777765 3577888999998886
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=9.4e-24 Score=247.73 Aligned_cols=343 Identities=19% Similarity=0.205 Sum_probs=213.4
Q ss_pred cCcceeEEEEEecCCccc-cccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccC
Q 002362 527 FDEKVRHLLLIVGNGASF-PVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIP 605 (930)
Q Consensus 527 ~~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp 605 (930)
.+..++++.+..+.+..+ +..+..+++|++|+++++.+... .+..|.++++|++|+|++| .+..+|
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~------~~~~~~~l~~L~~L~Ls~n-------~l~~~~ 90 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI------EGDAFYSLGSLEHLDLSDN-------HLSSLS 90 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE------CTTTTTTCTTCCEEECTTS-------CCCSCC
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc------ChhhccccccCCEEECCCC-------ccCccC
Confidence 456789999998887765 45688899999999999875432 3445788999999999965 344555
Q ss_pred c-ccccCCCCCeeeccCCcccc--cccccccCCcccEEeccCCCCCcccc-ccccccCCcceEeecCcccccccCCcCCC
Q 002362 606 R-NIERLVHLRYLNLSNQSIRK--LPDTLCELYNLQKLDISCCCKLKELP-QGIGKLINMRHLLNYGTISLRYMPVGIGR 681 (930)
Q Consensus 606 ~-~i~~L~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~ 681 (930)
. .++++++|++|++++|.++. .|..++++++|++|++++|..+..+| ..+..+++|++|++++|......|..++.
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 4 48999999999999999884 46788999999999999988677776 47889999999999988665567777777
Q ss_pred CCCCCcCCceEeCCCCCcCCCccc-ccccccCCCcCCeeeeecccC----------------------------------
Q 002362 682 LTSLRTLDEFYVSGGGGIDGRKAC-RLESLRSLELLQVCGIRRLGN---------------------------------- 726 (930)
Q Consensus 682 l~~L~~L~~~~~~~~~~~~~~~~~-~l~~L~~L~~L~~~~~~~~~~---------------------------------- 726 (930)
+++|++|++..+.... .+. .+..+++|+.|++.++...+.
T Consensus 171 l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 245 (549)
T 2z81_A 171 IRDIHHLTLHLSESAF-----LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245 (549)
T ss_dssp CSEEEEEEEECSBSTT-----HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred cccCceEecccCcccc-----cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHH
Confidence 6666655544322110 000 001111111111111111000
Q ss_pred -----------------------C------------------------CCh------hh-------------------hh
Q 002362 727 -----------------------V------------------------TDV------GE-------------------AK 734 (930)
Q Consensus 727 -----------------------~------------------------~~~------~~-------------------~~ 734 (930)
. +.. .. ..
T Consensus 246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~i 325 (549)
T 2z81_A 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325 (549)
T ss_dssp GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCC
T ss_pred HhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccC
Confidence 0 000 00 00
Q ss_pred hcc-ccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCC---cccccccCccEEEeeC
Q 002362 735 RLE-LDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFP---PWMMSLTNLRSLDLDD 810 (930)
Q Consensus 735 ~~~-l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p---~~~~~l~~L~~L~L~~ 810 (930)
... +..+++|+.|++++|.+.+. .......+..+++|++|++++|.+.+ +| ..+..+++|+.|+|++
T Consensus 326 p~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~ 396 (549)
T 2z81_A 326 PCSFSQHLKSLEFLDLSENLMVEE--------YLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISR 396 (549)
T ss_dssp CHHHHHHCTTCCEEECCSSCCCHH--------HHHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTT
T ss_pred CHHHHhcCccccEEEccCCccccc--------cccchhhhhccccCcEEEccCCcccc-cccchhhhhcCCCCCEEECCC
Confidence 000 01344555555555544321 00012235667888888888888776 44 3466788888888888
Q ss_pred CCCCCCCCC-CCCCCCcceeeeccCcCceEeCCc--------------cccCcccccCccccceeeccc---------cc
Q 002362 811 CENCEKLPP-LGKLPSLEKLSISFMCSVKRVDNE--------------ILGIEITIAFPKLKSLTISWI---------IM 866 (930)
Q Consensus 811 ~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~--------------~~~~~~~~~f~~L~~L~l~~~---------~l 866 (930)
|.+. .+|. ++.+++|++|++++|. ++.++.. +.+. ...+++|++|++++| .+
T Consensus 397 N~l~-~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~--~~~l~~L~~L~Ls~N~l~~ip~~~~l 472 (549)
T 2z81_A 397 NTFH-PMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSF--SLFLPRLQELYISRNKLKTLPDASLF 472 (549)
T ss_dssp CCCC-CCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCC--CCCCTTCCEEECCSSCCSSCCCGGGC
T ss_pred CCCc-cCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhh--cccCChhcEEECCCCccCcCCCcccC
Confidence 8766 4443 7778888888888764 2222211 1111 114666777777666 35
Q ss_pred cccceeeeccCCccCCCCC-CCCCCCCccEEEEecC
Q 002362 867 PRLSSLTFDSCPKLKALPD-HFHQTTTLKEFNIGWN 901 (930)
Q Consensus 867 p~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l~~n 901 (930)
++|+.|++++| .++.+|. .+..+++|+.|++++|
T Consensus 473 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 473 PVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp TTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSS
T ss_pred ccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCC
Confidence 66777777776 4555543 3667777777777765
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=3.4e-23 Score=246.05 Aligned_cols=270 Identities=18% Similarity=0.160 Sum_probs=176.8
Q ss_pred EEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCccc-CcccccCC
Q 002362 534 LLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRI-PRNIERLV 612 (930)
Q Consensus 534 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~L~ 612 (930)
+......+..+|..+. +++++|+++++.+... .+..|.++++|++|+|++| .+..+ |..|++++
T Consensus 16 ~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~Ls~n-------~l~~i~~~~~~~l~ 80 (606)
T 3vq2_A 16 YQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKIL------KSYSFSNFSELQWLDLSRC-------EIETIEDKAWHGLH 80 (606)
T ss_dssp EECTTSCCSSCCTTSC--TTCCEEECTTSCCCEE------CTTTTTTCTTCCEEECTTC-------CCCEECTTTTTTCT
T ss_pred eEccCCCcccCCCCCC--CCcCEEECCCCCcCEe------ChhhccCCccCcEEeCCCC-------cccccCHHHhhchh
Confidence 3333344555565443 8899999999975432 3445889999999999965 34555 67899999
Q ss_pred CCCeeeccCCccccc-ccccccCCcccEEeccCCCCCcccc-ccccccCCcceEeecCccccc-ccCCcCCCCCCCCcCC
Q 002362 613 HLRYLNLSNQSIRKL-PDTLCELYNLQKLDISCCCKLKELP-QGIGKLINMRHLLNYGTISLR-YMPVGIGRLTSLRTLD 689 (930)
Q Consensus 613 ~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~ 689 (930)
+|++|+|++|.++.+ |..++++++|++|++++|. +..+| ..++++++|++|++++|.... .+|..++++++|++|+
T Consensus 81 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~ 159 (606)
T 3vq2_A 81 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159 (606)
T ss_dssp TCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEE
T ss_pred hcCEeECCCCcccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEE
Confidence 999999999999988 7889999999999999998 55554 779999999999999995433 5799999999999999
Q ss_pred ceEeCCCCCcCCCcccccccccCCC----cCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCC----------
Q 002362 690 EFYVSGGGGIDGRKACRLESLRSLE----LLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEE---------- 755 (930)
Q Consensus 690 ~~~~~~~~~~~~~~~~~l~~L~~L~----~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~---------- 755 (930)
+..+.... ..+..+..+.+|+ .|++.++......+. .....+|+.|++++|.+.
T Consensus 160 Ls~n~l~~----~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~--------~~~~~~L~~L~L~~n~~~~~~~~~~~~~ 227 (606)
T 3vq2_A 160 LSYNYIQT----ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ--------AFQGIKLHELTLRGNFNSSNIMKTCLQN 227 (606)
T ss_dssp CCSSCCCE----ECTTTTHHHHHCTTCCCEEECTTCCCCEECTT--------TTTTCEEEEEEEESCCSCHHHHHHHHHT
T ss_pred ccCCccee----cChhhhhhhhccccccceeeccCCCcceeCcc--------cccCceeeeeeccCCccchhHHHHHhcc
Confidence 87654432 1233455555554 233333322111111 111124455555444332
Q ss_pred ---------------CCCcC----------------------CCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccc
Q 002362 756 ---------------GDGQR----------------------RKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMM 798 (930)
Q Consensus 756 ---------------~~~~~----------------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~ 798 (930)
..... ........++. +..+++|+.|++++|.+.. +| ++.
T Consensus 228 l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~ 304 (606)
T 3vq2_A 228 LAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVP 304 (606)
T ss_dssp TTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCC
T ss_pred ccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hcc
Confidence 10000 00000011122 5556777777777777765 66 666
Q ss_pred cccCccEEEeeCCCCCCCCCCCCCCCCcceeeeccCcC
Q 002362 799 SLTNLRSLDLDDCENCEKLPPLGKLPSLEKLSISFMCS 836 (930)
Q Consensus 799 ~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~ 836 (930)
.+++|+.|++++|.+ +.+|.+ .+++|+.|++++|..
T Consensus 305 ~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 305 KHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKG 340 (606)
T ss_dssp TTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSS
T ss_pred ccccCCEEEcccccC-cccccC-CCCccceeeccCCcC
Confidence 777777777777766 566666 777777777776643
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=1.9e-23 Score=243.17 Aligned_cols=343 Identities=17% Similarity=0.101 Sum_probs=221.1
Q ss_pred eEEEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCccc-Cccccc
Q 002362 532 RHLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRI-PRNIER 610 (930)
Q Consensus 532 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~ 610 (930)
+++.+..+.+..+|..+. ++|+.|+++++.+.. ..+..|.++++|++|+|++|. +..+ |..+++
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~ 67 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISE------LWTSDILSLSKLRILIISHNR-------IQYLDISVFKF 67 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCC------CCHHHHTTCTTCCEEECCSSC-------CCEEEGGGGTT
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccc------cChhhccccccccEEecCCCc-------cCCcChHHhhc
Confidence 456667777777776554 899999999997532 245568999999999999654 4454 789999
Q ss_pred CCCCCeeeccCCcccccccccccCCcccEEeccCCCCCc-cccccccccCCcceEeecCcccccccCCcCCCCCCC--Cc
Q 002362 611 LVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLK-ELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSL--RT 687 (930)
Q Consensus 611 L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L--~~ 687 (930)
+++|++|+|++|.++.+|.. .+++|++|++++|.... .+|..++.+++|++|++++|.. .. ..++.+++| ++
T Consensus 68 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l-~~--~~~~~l~~L~L~~ 142 (520)
T 2z7x_B 68 NQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL-EK--SSVLPIAHLNISK 142 (520)
T ss_dssp CTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC-CG--GGGGGGTTSCEEE
T ss_pred ccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCccc-ch--hhccccccceeeE
Confidence 99999999999999999987 89999999999998444 4788999999999999999843 32 456777888 99
Q ss_pred CCceEeCC--CCCcCCCccc----------------------ccccccCCCcCCeeeeecccCCCChhhhhhccccC---
Q 002362 688 LDEFYVSG--GGGIDGRKAC----------------------RLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDK--- 740 (930)
Q Consensus 688 L~~~~~~~--~~~~~~~~~~----------------------~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~--- 740 (930)
|++..+.. .......+.. .+..+++|+.|++.++.............. .+..
T Consensus 143 L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~ 221 (520)
T 2z7x_B 143 VLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPK 221 (520)
T ss_dssp EEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTT
T ss_pred EEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccc
Confidence 99887755 2221111111 112244455555544420000000000000 0111
Q ss_pred ------------------------CCCCCeeEEEeeCCCCCCcCCC---------------------ccchHHHhh----
Q 002362 741 ------------------------MKNLSCLKLLFNKEEGDGQRRK---------------------NEDDQLLLE---- 771 (930)
Q Consensus 741 ------------------------~~~L~~L~L~~~~~~~~~~~~~---------------------~~~~~~~~~---- 771 (930)
.++|+.|++++|.+.+..+... ......+..
T Consensus 222 L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~ 301 (520)
T 2z7x_B 222 LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN 301 (520)
T ss_dssp CCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHT
T ss_pred hhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhccccc
Confidence 2356666666655442111000 000000000
Q ss_pred -----------------cCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCC--CCCC-CCCCCCcceeee
Q 002362 772 -----------------FLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCE--KLPP-LGKLPSLEKLSI 831 (930)
Q Consensus 772 -----------------~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~--~l~~-l~~l~~L~~L~L 831 (930)
....+++|++|++++|.+.+..|.++..+++|+.|+|++|.+.+ .+|. ++.+++|+.|++
T Consensus 302 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381 (520)
T ss_dssp CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred CceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence 01466788888888888877678888888888888888887664 3333 777888888888
Q ss_pred ccCcCceEeCCccccCcccccCccccceeeccccc---------cccceeeeccCCccCCCCCCCCCCCCccEEEEecC
Q 002362 832 SFMCSVKRVDNEILGIEITIAFPKLKSLTISWIIM---------PRLSSLTFDSCPKLKALPDHFHQTTTLKEFNIGWN 901 (930)
Q Consensus 832 ~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~l---------p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~n 901 (930)
++|.-...++.... ..+++|+.|.+++|.+ ++|+.|++++| .++.+|..+..+++|++|++++|
T Consensus 382 s~N~l~~~l~~~~~-----~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 382 SQNSVSYDEKKGDC-----SWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp CSSCCBCCGGGCSC-----CCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCcCCcccccchh-----ccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC
Confidence 86652211332211 2467777777777722 57777777777 56677776667777777777775
No 27
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=5e-23 Score=223.32 Aligned_cols=232 Identities=23% Similarity=0.344 Sum_probs=193.0
Q ss_pred cCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccC
Q 002362 580 ESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLI 659 (930)
Q Consensus 580 ~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~ 659 (930)
..+.++.|+|++ + .+..+|..++++++|++|+|++|.++.+|..++++++|++|++++|. +..+|..+..++
T Consensus 79 ~~~~l~~L~L~~---n----~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~ 150 (328)
T 4fcg_A 79 TQPGRVALELRS---V----PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLN 150 (328)
T ss_dssp TSTTCCEEEEES---S----CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCT
T ss_pred cccceeEEEccC---C----CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCc
Confidence 457899999994 3 56788999999999999999999999999999999999999999998 669999999999
Q ss_pred CcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhcccc
Q 002362 660 NMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELD 739 (930)
Q Consensus 660 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~ 739 (930)
+|++|++++|.....+|..++... ... .+.
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~-------------------------------------------~~~-------~~~ 180 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTD-------------------------------------------ASG-------EHQ 180 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC--------------------------------------------CC-------CEE
T ss_pred CCCEEECCCCCCccccChhHhhcc-------------------------------------------chh-------hhc
Confidence 999999999866666665433200 000 244
Q ss_pred CCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCC
Q 002362 740 KMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP 819 (930)
Q Consensus 740 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~ 819 (930)
.+++|+.|++++|.+.. ++..+..+++|++|++++|.+.+ +|..+..+++|+.|+|++|...+.+|.
T Consensus 181 ~l~~L~~L~L~~n~l~~------------lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~ 247 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIRS------------LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPP 247 (328)
T ss_dssp ESTTCCEEEEEEECCCC------------CCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCC
T ss_pred cCCCCCEEECcCCCcCc------------chHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHH
Confidence 56788899999988764 45667778899999999999987 888899999999999999998888876
Q ss_pred -CCCCCCcceeeeccCcCceEeCCccccCcccccCccccceeeccccccccceeeeccCCccCCCCCCCCCCCCccEEEE
Q 002362 820 -LGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWIIMPRLSSLTFDSCPKLKALPDHFHQTTTLKEFNI 898 (930)
Q Consensus 820 -l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l 898 (930)
++.+++|+.|+|++|.....++..+. .+++|+.|+|++|+.+..+|..+.++++|+.+++
T Consensus 248 ~~~~l~~L~~L~L~~n~~~~~~p~~~~-------------------~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 248 IFGGRAPLKRLILKDCSNLLTLPLDIH-------------------RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp CTTCCCCCCEEECTTCTTCCBCCTTGG-------------------GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred HhcCCCCCCEEECCCCCchhhcchhhh-------------------cCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 89999999999998876544443322 2788999999999999999999999999999999
Q ss_pred ecC
Q 002362 899 GWN 901 (930)
Q Consensus 899 ~~n 901 (930)
..|
T Consensus 309 ~~~ 311 (328)
T 4fcg_A 309 PPH 311 (328)
T ss_dssp CGG
T ss_pred CHH
Confidence 874
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=8.2e-23 Score=251.02 Aligned_cols=327 Identities=17% Similarity=0.159 Sum_probs=238.0
Q ss_pred ecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCccc-CcccccCCCCCe
Q 002362 538 VGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRI-PRNIERLVHLRY 616 (930)
Q Consensus 538 ~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~L~~Lr~ 616 (930)
..+...+|. ..+++++|++++|.+... .+..|.++++|++|+|++|. .+..+ |..|+++++|++
T Consensus 13 ~~~L~~vP~---lp~~l~~LdLs~N~i~~i------~~~~~~~l~~L~~LdLs~n~------~~~~i~~~~f~~L~~L~~ 77 (844)
T 3j0a_A 13 FCNLTQVPQ---VLNTTERLLLSFNYIRTV------TASSFPFLEQLQLLELGSQY------TPLTIDKEAFRNLPNLRI 77 (844)
T ss_dssp CCCSSCCCS---SCTTCCEEEEESCCCCEE------CSSSCSSCCSCSEEEECTTC------CCCEECTTTTSSCTTCCE
T ss_pred CCCCCCCCC---CCCCcCEEECCCCcCCcc------ChhHCcccccCeEEeCCCCC------CccccCHHHhcCCCCCCE
Confidence 344555554 468999999999975432 23448899999999999764 23455 788999999999
Q ss_pred eeccCCccccc-ccccccCCcccEEeccCCCCCcccccc--ccccCCcceEeecCcccccccC-CcCCCCCCCCcCCceE
Q 002362 617 LNLSNQSIRKL-PDTLCELYNLQKLDISCCCKLKELPQG--IGKLINMRHLLNYGTISLRYMP-VGIGRLTSLRTLDEFY 692 (930)
Q Consensus 617 L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~--i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~ 692 (930)
|+|++|.+..+ |..++++++|++|++++|.....+|.. +.++++|++|++++|......| ..++++++|++|++..
T Consensus 78 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp EECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred EECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence 99999999977 889999999999999999855556765 8999999999999995443333 5689999999999877
Q ss_pred eCCCCCcCCCcccccccc--cCCCcCCeeeeecccCCCChhhhhhccccCCC------CCCeeEEEeeCCCCCCcCCCc-
Q 002362 693 VSGGGGIDGRKACRLESL--RSLELLQVCGIRRLGNVTDVGEAKRLELDKMK------NLSCLKLLFNKEEGDGQRRKN- 763 (930)
Q Consensus 693 ~~~~~~~~~~~~~~l~~L--~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~------~L~~L~L~~~~~~~~~~~~~~- 763 (930)
+.... ..+..+..+ ++|+.|.+..+......+. .+..+. .|+.|++++|.+....+....
T Consensus 158 N~i~~----~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~-------~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 226 (844)
T 3j0a_A 158 NQIFL----VCEHELEPLQGKTLSFFSLAANSLYSRVSV-------DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226 (844)
T ss_dssp SCCCC----CCSGGGHHHHHCSSCCCEECCSBSCCCCCC-------CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGG
T ss_pred CcCCe----eCHHHcccccCCccceEECCCCcccccccc-------chhhcCCccccCceeEEecCCCcCchhHHHHHHh
Confidence 65433 224455555 7788888877766554333 223332 489999998866532110000
Q ss_pred ------------------------cchHHHhhcCCC--CCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCC
Q 002362 764 ------------------------EDDQLLLEFLQP--PPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKL 817 (930)
Q Consensus 764 ------------------------~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l 817 (930)
.........+.. +++|+.|++++|.+....|.++..+++|+.|+|++|.+....
T Consensus 227 ~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 306 (844)
T 3j0a_A 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA 306 (844)
T ss_dssp TSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC
T ss_pred hcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC
Confidence 000000111222 378999999999988756788889999999999999887765
Q ss_pred CC-CCCCCCcceeeeccCcCceEeCCccccCcccccCccccceeeccc-----------cccccceeeeccCCccCCCCC
Q 002362 818 PP-LGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWI-----------IMPRLSSLTFDSCPKLKALPD 885 (930)
Q Consensus 818 ~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~-----------~lp~L~~L~l~~c~~L~~lp~ 885 (930)
|. ++.+++|+.|+|++|. ++.+....+ ..+++|+.|.+++| .+++|+.|++++| .++.++.
T Consensus 307 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-----~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~ 379 (844)
T 3j0a_A 307 DEAFYGLDNLQVLNLSYNL-LGELYSSNF-----YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN-ALTTIHF 379 (844)
T ss_dssp TTTTTTCSSCCEEEEESCC-CSCCCSCSC-----SSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETC-CSCCCSS
T ss_pred hHHhcCCCCCCEEECCCCC-CCccCHHHh-----cCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCC-CCCcccC
Confidence 54 8999999999999764 222221111 26789999999887 4789999999998 5666654
Q ss_pred CCCCCCCccEEEEecC
Q 002362 886 HFHQTTTLKEFNIGWN 901 (930)
Q Consensus 886 ~l~~l~~L~~L~l~~n 901 (930)
+++|+.|++++|
T Consensus 380 ----~~~L~~L~l~~N 391 (844)
T 3j0a_A 380 ----IPSIPDIFLSGN 391 (844)
T ss_dssp ----CCSCSEEEEESC
T ss_pred ----CCCcchhccCCC
Confidence 778889998885
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=6.7e-23 Score=240.63 Aligned_cols=319 Identities=16% Similarity=0.132 Sum_probs=215.2
Q ss_pred CCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccC-cccccCCCCCeeeccCCccccc-
Q 002362 550 GVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIP-RNIERLVHLRYLNLSNQSIRKL- 627 (930)
Q Consensus 550 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~l- 627 (930)
.+...++++++++..... +.. + .+.|++|+|++|. +..+| ..++++++|++|+|++|.++.+
T Consensus 29 ~~~~~~~l~ls~~~L~~i------p~~-~--~~~L~~L~Ls~N~-------i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 92 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHV------PKD-L--PPRTKALSLSQNS-------ISELRMPDISFLSELRVLRLSHNRIRSLD 92 (562)
T ss_dssp ----CCEEECTTSCCCSC------CTT-S--CTTCCEEECCSSC-------CCCCCGGGTTTCTTCCEEECCSCCCCEEC
T ss_pred ccCCCcEEEcCCCCCccC------CCC-C--CCCcCEEECCCCC-------ccccChhhhccCCCccEEECCCCCCCcCC
Confidence 344558999998864322 222 1 2789999999654 45554 6899999999999999999988
Q ss_pred ccccccCCcccEEeccCCCCCccccccccccCCcceEeecCccccccc--CCcCCCCCCCCcCCceEeCCCCCcCCCccc
Q 002362 628 PDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYM--PVGIGRLTSLRTLDEFYVSGGGGIDGRKAC 705 (930)
Q Consensus 628 p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~--p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~ 705 (930)
|..+.++++|++|++++|. +..+|.. .+++|++|++++|. +..+ |..++++++|++|++..+.... .
T Consensus 93 ~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~-------~ 161 (562)
T 3a79_B 93 FHVFLFNQDLEYLDVSHNR-LQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ-------L 161 (562)
T ss_dssp TTTTTTCTTCCEEECTTSC-CCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT-------T
T ss_pred HHHhCCCCCCCEEECCCCc-CCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc-------C
Confidence 6779999999999999998 7799987 89999999999995 4444 5789999999999988765432 2
Q ss_pred ccccccCC--CcCCeeeeec--ccCCCChhhh-------------------hhccc------------------------
Q 002362 706 RLESLRSL--ELLQVCGIRR--LGNVTDVGEA-------------------KRLEL------------------------ 738 (930)
Q Consensus 706 ~l~~L~~L--~~L~~~~~~~--~~~~~~~~~~-------------------~~~~l------------------------ 738 (930)
.+..+++| +.|++.++.. ....+..-.. ....+
T Consensus 162 ~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~ 241 (562)
T 3a79_B 162 DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF 241 (562)
T ss_dssp TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH
T ss_pred chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH
Confidence 34444444 5555554433 1111110000 00000
Q ss_pred -------------------------------cCCCCCCeeEEEeeCCCCCCcCCCc---------------------cch
Q 002362 739 -------------------------------DKMKNLSCLKLLFNKEEGDGQRRKN---------------------EDD 766 (930)
Q Consensus 739 -------------------------------~~~~~L~~L~L~~~~~~~~~~~~~~---------------------~~~ 766 (930)
....+|+.|++++|.+.+..+.... ...
T Consensus 242 ~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~ 321 (562)
T 3a79_B 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK 321 (562)
T ss_dssp HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCH
T ss_pred HHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecCh
Confidence 0112667777777765532111100 000
Q ss_pred HHHhh---------------------cCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCC--CC-CCCC
Q 002362 767 QLLLE---------------------FLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEK--LP-PLGK 822 (930)
Q Consensus 767 ~~~~~---------------------~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~--l~-~l~~ 822 (930)
..+.. ....+++|++|++++|.+.+..|.++..+++|+.|+|++|.+... +| .++.
T Consensus 322 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 401 (562)
T 3a79_B 322 EALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN 401 (562)
T ss_dssp HHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT
T ss_pred hhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC
Confidence 00000 015678899999999988887788888999999999999876642 22 3788
Q ss_pred CCCcceeeeccCcCceEeCCccccCcccccCccccceeecccc--------c-cccceeeeccCCccCCCCCCCCCCCCc
Q 002362 823 LPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWII--------M-PRLSSLTFDSCPKLKALPDHFHQTTTL 893 (930)
Q Consensus 823 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~--------l-p~L~~L~l~~c~~L~~lp~~l~~l~~L 893 (930)
+++|+.|++++|.-...++..... .+++|+.|.+++|. + ++|+.|++++| .++.+|..+..+++|
T Consensus 402 l~~L~~L~l~~N~l~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L 475 (562)
T 3a79_B 402 MSSLETLDVSLNSLNSHAYDRTCA-----WAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQAL 475 (562)
T ss_dssp CTTCCEEECTTSCCBSCCSSCCCC-----CCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCC
T ss_pred CCCCCEEECCCCcCCCccChhhhc-----CcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCC
Confidence 899999999876532213333222 56888888888873 2 68888888888 678888888788888
Q ss_pred cEEEEecC
Q 002362 894 KEFNIGWN 901 (930)
Q Consensus 894 ~~L~l~~n 901 (930)
++|++++|
T Consensus 476 ~~L~L~~N 483 (562)
T 3a79_B 476 QELNVASN 483 (562)
T ss_dssp SEEECCSS
T ss_pred CEEECCCC
Confidence 88888886
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=7.1e-23 Score=246.69 Aligned_cols=155 Identities=19% Similarity=0.175 Sum_probs=122.3
Q ss_pred cCcceeEEEEEecCCccccc-cccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccC
Q 002362 527 FDEKVRHLLLIVGNGASFPV-STCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIP 605 (930)
Q Consensus 527 ~~~~~r~l~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp 605 (930)
.+..++++.+..+.+..++. .+..+++|++|+++++.+... .+..|.++++|++|+|++| .+..+|
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~n-------~l~~l~ 89 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL------EPELCQKLPMLKVLNLQHN-------ELSQLS 89 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC------CTTHHHHCTTCCEEECCSS-------CCCCCC
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc------CHHHHhcccCcCEEECCCC-------ccCccC
Confidence 56789999999988876654 588899999999998864322 3456888999999999954 456677
Q ss_pred c-ccccCCCCCeeeccCCcccccc-cccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCC-cC--C
Q 002362 606 R-NIERLVHLRYLNLSNQSIRKLP-DTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPV-GI--G 680 (930)
Q Consensus 606 ~-~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i--~ 680 (930)
. .|+++++|++|+|++|.++.+| ..++++++|++|++++|......|..+.++++|++|++++|. +..++. .+ .
T Consensus 90 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~ 168 (680)
T 1ziw_A 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIF 168 (680)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGG
T ss_pred hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhcc
Confidence 6 5899999999999999999886 578999999999999998555667778999999999999884 344443 33 3
Q ss_pred CCCCCCcCCceEeCC
Q 002362 681 RLTSLRTLDEFYVSG 695 (930)
Q Consensus 681 ~l~~L~~L~~~~~~~ 695 (930)
.+++|++|++..+..
T Consensus 169 ~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 169 ANSSLKKLELSSNQI 183 (680)
T ss_dssp TTCEESEEECTTCCC
T ss_pred ccccccEEECCCCcc
Confidence 567888888765533
No 31
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=1.2e-22 Score=241.29 Aligned_cols=268 Identities=19% Similarity=0.184 Sum_probs=183.2
Q ss_pred ccccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCc-CCCCCCC
Q 002362 607 NIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVG-IGRLTSL 685 (930)
Q Consensus 607 ~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L 685 (930)
.++++++|++|++++|.++.+|..+..+++|++|++++|......|..+..+++|++|++++|.....+|.. ++.+++|
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 366777888888888888888887888888888888887744444667778888888888877554455544 7778888
Q ss_pred CcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccc
Q 002362 686 RTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNED 765 (930)
Q Consensus 686 ~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~ 765 (930)
++|++..+...... ..+..+..+++|+.|++.++......+. .+..+++|+.|++++|.+....
T Consensus 353 ~~L~l~~n~l~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~------- 416 (606)
T 3t6q_A 353 RELDLSHDDIETSD--CCNLQLRNLSHLQSLNLSYNEPLSLKTE-------AFKECPQLELLDLAFTRLKVKD------- 416 (606)
T ss_dssp CEEECCSSCCCEEE--ESTTTTTTCTTCCEEECCSCSCEEECTT-------TTTTCTTCSEEECTTCCEECCT-------
T ss_pred CEEECCCCcccccc--CcchhcccCCCCCEEECCCCcCCcCCHH-------HhcCCccCCeEECCCCcCCCcc-------
Confidence 88776654433200 0023456667777776666554333332 4666778888888877665420
Q ss_pred hHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCC-C---CCCCCCCCcceeeeccCcCceEeC
Q 002362 766 DQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEK-L---PPLGKLPSLEKLSISFMCSVKRVD 841 (930)
Q Consensus 766 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~-l---~~l~~l~~L~~L~L~~~~~l~~~~ 841 (930)
....+..+++|++|++++|.+....|.++..+++|+.|+|++|.+.+. + ..++.+++|+.|++++|. ++.++
T Consensus 417 ---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~ 492 (606)
T 3t6q_A 417 ---AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSID 492 (606)
T ss_dssp ---TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEEC
T ss_pred ---cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccC
Confidence 122366778888888888888775677788888888888888876652 2 237788888888888764 33333
Q ss_pred CccccCcccccCccccceeeccc-----------cccccceeeeccCCccCCC-CCCCCCCCCccEEEEecC
Q 002362 842 NEILGIEITIAFPKLKSLTISWI-----------IMPRLSSLTFDSCPKLKAL-PDHFHQTTTLKEFNIGWN 901 (930)
Q Consensus 842 ~~~~~~~~~~~f~~L~~L~l~~~-----------~lp~L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~l~~n 901 (930)
...++ .+++|+.|++++| .+++| .|++++|. +..+ |..+..+++|+.|++++|
T Consensus 493 ~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 493 QHAFT-----SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH-ISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp TTTTT-----TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC-CCCCCGGGHHHHHTSSEEECTTC
T ss_pred hhhhc-----cccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc-ccccCHhhcccCCCCCEEeCCCC
Confidence 22222 6788888888887 35677 88888884 4444 445677888999999886
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=2e-22 Score=230.66 Aligned_cols=302 Identities=21% Similarity=0.242 Sum_probs=196.3
Q ss_pred CCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccccccc
Q 002362 550 GVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPD 629 (930)
Q Consensus 550 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~ 629 (930)
.++++++|.+.++..... +. +..+++|++|+|++| .+..+|. ++++++|++|++++|.+..+|.
T Consensus 44 ~l~~l~~L~l~~~~i~~l-------~~-~~~l~~L~~L~Ls~n-------~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~ 107 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI-------DG-VEYLNNLTQINFSNN-------QLTDITP-LKNLTKLVDILMNNNQIADITP 107 (466)
T ss_dssp HHHTCCEEECCSSCCCCC-------TT-GGGCTTCCEEECCSS-------CCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred HhccccEEecCCCCCccC-------cc-hhhhcCCCEEECCCC-------ccCCchh-hhccccCCEEECCCCccccChh
Confidence 467899999998864322 22 678999999999965 4556665 9999999999999999999887
Q ss_pred ccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCccccccc
Q 002362 630 TLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLES 709 (930)
Q Consensus 630 ~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~ 709 (930)
++++++|++|++++|. +..+|. +..+++|++|++++|. +..+| .++.+++|+.|++.+. ... ...+..
T Consensus 108 -~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~~-~~~------~~~~~~ 175 (466)
T 1o6v_A 108 -LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGNQ-VTD------LKPLAN 175 (466)
T ss_dssp -GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEES-CCC------CGGGTT
T ss_pred -hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCCc-ccC------chhhcc
Confidence 9999999999999998 777776 9999999999999984 45555 4888888888887532 111 123556
Q ss_pred ccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCC---------ccchHHHhhcCCCCCCcc
Q 002362 710 LRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRK---------NEDDQLLLEFLQPPPNLR 780 (930)
Q Consensus 710 L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~~L~ 780 (930)
+++|+.|++.++.... ++ .+..+++|+.|++++|.+....+... ....-.-...+..+++|+
T Consensus 176 l~~L~~L~l~~n~l~~-~~--------~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~ 246 (466)
T 1o6v_A 176 LTTLERLDISSNKVSD-IS--------VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT 246 (466)
T ss_dssp CTTCCEEECCSSCCCC-CG--------GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred CCCCCEEECcCCcCCC-Ch--------hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCC
Confidence 6666666655554321 11 24455666666666665543200000 000000001233445566
Q ss_pred eEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCCCCCCCCcceeeeccCcCceEeCCccccCcccccCcccccee
Q 002362 781 KLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPPLGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLT 860 (930)
Q Consensus 781 ~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~ 860 (930)
+|++++|.+.+ ++. +..+++|+.|++++|.+.. +++++.+++|+.|++++|. + .+......+++|+.|.
T Consensus 247 ~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~-l-------~~~~~~~~l~~L~~L~ 315 (466)
T 1o6v_A 247 DLDLANNQISN-LAP-LSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQ-L-------EDISPISNLKNLTYLT 315 (466)
T ss_dssp EEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSC-C-------SCCGGGGGCTTCSEEE
T ss_pred EEECCCCcccc-chh-hhcCCCCCEEECCCCccCc-cccccCCCccCeEEcCCCc-c-------cCchhhcCCCCCCEEE
Confidence 66666655554 332 4555666666666664443 2335566666666666543 1 1111122677888888
Q ss_pred eccc---------cccccceeeeccCCccCCCCCCCCCCCCccEEEEecC
Q 002362 861 ISWI---------IMPRLSSLTFDSCPKLKALPDHFHQTTTLKEFNIGWN 901 (930)
Q Consensus 861 l~~~---------~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~n 901 (930)
+++| .+++|+.|++++| .+..++ .+..+++|+.|++++|
T Consensus 316 L~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 316 LYFNNISDISPVSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHN 363 (466)
T ss_dssp CCSSCCSCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS
T ss_pred CcCCcCCCchhhccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCC
Confidence 8777 4678888888887 566665 5777888888888884
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=1.6e-22 Score=222.36 Aligned_cols=258 Identities=17% Similarity=0.197 Sum_probs=191.6
Q ss_pred cCcceeEEEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCc
Q 002362 527 FDEKVRHLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPR 606 (930)
Q Consensus 527 ~~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~ 606 (930)
....++++.+..+.+..++. +..+++|++|.+.++.+... + .+..+++|++|++++| .+..+|.
T Consensus 64 ~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~-------~-~~~~l~~L~~L~l~~n-------~i~~~~~ 127 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDI-------S-ALQNLTNLRELYLNED-------NISDISP 127 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-------G-GGTTCTTCSEEECTTS-------CCCCCGG
T ss_pred hcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCc-------h-HHcCCCcCCEEECcCC-------cccCchh
Confidence 35678888888888776555 78889999999988865432 1 2788889999999854 3455554
Q ss_pred ccccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCC
Q 002362 607 NIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLR 686 (930)
Q Consensus 607 ~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 686 (930)
+..+++|++|++++|.....+..+..+++|++|++++|. +..++. +..+++|++|++++| .+..++. +..+++|+
T Consensus 128 -~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~ 202 (347)
T 4fmz_A 128 -LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYN-QIEDISP-LASLTSLH 202 (347)
T ss_dssp -GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTS-CCCCCGG-GGGCTTCC
T ss_pred -hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCC-ccccccc-ccCCCccc
Confidence 888899999999998655444558889999999999887 666655 888899999999888 4455554 77888888
Q ss_pred cCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccch
Q 002362 687 TLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDD 766 (930)
Q Consensus 687 ~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 766 (930)
.|++..+.... ...+..+++|+.|++.++..... + .+..+++|+.|++++|.+..
T Consensus 203 ~L~l~~n~l~~------~~~~~~~~~L~~L~l~~n~l~~~-~--------~~~~l~~L~~L~l~~n~l~~---------- 257 (347)
T 4fmz_A 203 YFTAYVNQITD------ITPVANMTRLNSLKIGNNKITDL-S--------PLANLSQLTWLEIGTNQISD---------- 257 (347)
T ss_dssp EEECCSSCCCC------CGGGGGCTTCCEEECCSSCCCCC-G--------GGTTCTTCCEEECCSSCCCC----------
T ss_pred eeecccCCCCC------CchhhcCCcCCEEEccCCccCCC-c--------chhcCCCCCEEECCCCccCC----------
Confidence 88876554433 22266677777777766644221 1 25678889999999887765
Q ss_pred HHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCC-CCCCCCcceeeeccCc
Q 002362 767 QLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP-LGKLPSLEKLSISFMC 835 (930)
Q Consensus 767 ~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 835 (930)
...+..+++|++|++++|.+.. + .++..+++|+.|+|++|.+.+..+. ++.+++|+.|++++|.
T Consensus 258 ---~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 258 ---INAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp ---CGGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred ---ChhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 1346678899999999998877 5 4577889999999999977655444 7788999999998764
No 34
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=5.1e-23 Score=242.79 Aligned_cols=347 Identities=18% Similarity=0.125 Sum_probs=200.5
Q ss_pred CcceeEEEEEecCCcccc-ccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCc
Q 002362 528 DEKVRHLLLIVGNGASFP-VSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPR 606 (930)
Q Consensus 528 ~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~ 606 (930)
...++++.+..+.+..++ ..+..+++|++|.+.++..... .+..|.++++|++|++++| .+..+|.
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n-------~l~~l~~ 117 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL------ALGAFSGLSSLQKLVAVET-------NLASLEN 117 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE------CTTTTTTCTTCCEEECTTS-------CCCCSTT
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc------CHhhhcCcccccccccccc-------ccccCCC
Confidence 456888888888776653 4577899999999998864322 3345788999999999955 3444543
Q ss_pred -ccccCCCCCeeeccCCcccc--cccccccCCcccEEeccCCCCCccccccccccCCc----ceEeecCcccccccCCc-
Q 002362 607 -NIERLVHLRYLNLSNQSIRK--LPDTLCELYNLQKLDISCCCKLKELPQGIGKLINM----RHLLNYGTISLRYMPVG- 678 (930)
Q Consensus 607 -~i~~L~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L----~~L~l~~~~~~~~~p~~- 678 (930)
.++++++|++|++++|.++. +|..++++++|++|++++|......|..+..+++| ++|++++|......|..
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~ 197 (570)
T 2z63_A 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197 (570)
T ss_dssp CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT
T ss_pred ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHh
Confidence 58889999999999998875 68889999999999999887444445567777776 66666665322111111
Q ss_pred --------------------------------------------------------------------------------
Q 002362 679 -------------------------------------------------------------------------------- 678 (930)
Q Consensus 679 -------------------------------------------------------------------------------- 678 (930)
T Consensus 198 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~ 277 (570)
T 2z63_A 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277 (570)
T ss_dssp TTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTT
T ss_pred ccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhh
Confidence
Q ss_pred CCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChh--h-----------hhhccccCCCCCC
Q 002362 679 IGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVG--E-----------AKRLELDKMKNLS 745 (930)
Q Consensus 679 i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~--~-----------~~~~~l~~~~~L~ 745 (930)
++.+++|++|++..+.... ++..+..+ +|+.|.+.++... .++... . ........+++|+
T Consensus 278 ~~~l~~L~~L~l~~~~l~~-----l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~ 350 (570)
T 2z63_A 278 FNCLTNVSSFSLVSVTIER-----VKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE 350 (570)
T ss_dssp TGGGTTCSEEEEESCEECS-----CCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCC
T ss_pred hcCcCcccEEEecCccchh-----hhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCC
Confidence 2222233333222211110 11111111 2222222221111 000000 0 0000013456677
Q ss_pred eeEEEeeCCCCCC--cC------C------CccchHHHhhcCCCCCCcceEEEeeccCCCCCC-cccccccCccEEEeeC
Q 002362 746 CLKLLFNKEEGDG--QR------R------KNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFP-PWMMSLTNLRSLDLDD 810 (930)
Q Consensus 746 ~L~L~~~~~~~~~--~~------~------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~L~~ 810 (930)
.|++++|.+.... +. . .......++..+..+++|++|++++|.+.+..| ..+..+++|+.|+|++
T Consensus 351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 430 (570)
T 2z63_A 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430 (570)
T ss_dssp EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTT
T ss_pred EEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcC
Confidence 7777666554210 00 0 000000012224455666666666666555223 3455667777777777
Q ss_pred CCCCCCCCC-CCCCCCcceeeeccCcCc-eEeCCccccCcccccCccccceeeccc-----------cccccceeeeccC
Q 002362 811 CENCEKLPP-LGKLPSLEKLSISFMCSV-KRVDNEILGIEITIAFPKLKSLTISWI-----------IMPRLSSLTFDSC 877 (930)
Q Consensus 811 ~~~~~~l~~-l~~l~~L~~L~L~~~~~l-~~~~~~~~~~~~~~~f~~L~~L~l~~~-----------~lp~L~~L~l~~c 877 (930)
|.+....|. ++.+++|+.|+|++|... ..++..+ ..+++|+.|.+++| .+++|+.|++++|
T Consensus 431 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcccccchhhhhcCCcCcEEECcCCcCccccchhhh------hcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 766554443 667777777777765422 1222211 25788888888887 4688999999988
Q ss_pred CccCCCC-CCCCCCCCccEEEEecC
Q 002362 878 PKLKALP-DHFHQTTTLKEFNIGWN 901 (930)
Q Consensus 878 ~~L~~lp-~~l~~l~~L~~L~l~~n 901 (930)
.+..+| ..+..+++|++|++++|
T Consensus 505 -~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 505 -QLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp -CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred -cCCCCCHHHhhcccCCcEEEecCC
Confidence 566665 45778899999999886
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=1.3e-22 Score=232.04 Aligned_cols=330 Identities=16% Similarity=0.162 Sum_probs=232.1
Q ss_pred ecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCccc-CcccccCCCCCe
Q 002362 538 VGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRI-PRNIERLVHLRY 616 (930)
Q Consensus 538 ~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~L~~Lr~ 616 (930)
......+|. -.++|++|+++++.+... .+..|.++++|++|+|++|... ..+ |..++++++|++
T Consensus 19 ~~~l~~lp~---l~~~l~~L~Ls~n~i~~~------~~~~~~~l~~L~~L~L~~n~~~------~~i~~~~~~~l~~L~~ 83 (455)
T 3v47_A 19 NRGLHQVPE---LPAHVNYVDLSLNSIAEL------NETSFSRLQDLQFLKVEQQTPG------LVIRNNTFRGLSSLII 83 (455)
T ss_dssp SSCCSSCCC---CCTTCCEEECCSSCCCEE------CTTTTSSCTTCCEEECCCCSTT------CEECTTTTTTCTTCCE
T ss_pred CCCcccCCC---CCCccCEEEecCCccCcC------ChhHhccCccccEEECcCCccc------ceECcccccccccCCE
Confidence 334445454 237899999999975432 3445889999999999966422 234 567899999999
Q ss_pred eeccCCccccc-ccccccCCcccEEeccCCCCCcccccc--ccccCCcceEeecCcccccccCCc-CCCCCCCCcCCceE
Q 002362 617 LNLSNQSIRKL-PDTLCELYNLQKLDISCCCKLKELPQG--IGKLINMRHLLNYGTISLRYMPVG-IGRLTSLRTLDEFY 692 (930)
Q Consensus 617 L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~--i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~ 692 (930)
|+|++|.++.+ |..++++++|++|++++|......|.. +..+++|++|++++|......|.. ++.+++|++|++..
T Consensus 84 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 84 LKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp EECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred EeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence 99999999876 778999999999999999854455655 899999999999999554444655 78999999999766
Q ss_pred eCCCCCcCCCcccccccc--cCCCcCCeeeeecccCCCC-hhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHH
Q 002362 693 VSGGGGIDGRKACRLESL--RSLELLQVCGIRRLGNVTD-VGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLL 769 (930)
Q Consensus 693 ~~~~~~~~~~~~~~l~~L--~~L~~L~~~~~~~~~~~~~-~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 769 (930)
+.... ..+..+..+ .+|+.|++.++......+. ........+..+++|+.|++++|.+.+. ....+
T Consensus 164 n~l~~----~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-------~~~~~ 232 (455)
T 3v47_A 164 NKVKS----ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES-------MAKRF 232 (455)
T ss_dssp CCBSC----CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH-------HHHHH
T ss_pred Ccccc----cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccccc-------chhhh
Confidence 54332 223344443 3455555544443222111 0111112244567899999999887642 11112
Q ss_pred hhcCCCCCCcceEEEeeccCCCC----------CCcccc--cccCccEEEeeCCCCCCCCCC-CCCCCCcceeeeccCcC
Q 002362 770 LEFLQPPPNLRKLLIGSYRGKTV----------FPPWMM--SLTNLRSLDLDDCENCEKLPP-LGKLPSLEKLSISFMCS 836 (930)
Q Consensus 770 ~~~l~~~~~L~~L~l~~~~~~~~----------~p~~~~--~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~ 836 (930)
.. ....++|+.|++++|...+. .+..+. ..++|+.|+|++|.+.+..|. ++.+++|+.|+|++|.
T Consensus 233 ~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~- 310 (455)
T 3v47_A 233 FD-AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE- 310 (455)
T ss_dssp HH-HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-
T ss_pred hc-cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-
Confidence 22 22347899999998854431 111122 247899999999988877665 8999999999999775
Q ss_pred ceEeCCccccCcccccCccccceeeccc-----------cccccceeeeccCCccCCC-CCCCCCCCCccEEEEecC
Q 002362 837 VKRVDNEILGIEITIAFPKLKSLTISWI-----------IMPRLSSLTFDSCPKLKAL-PDHFHQTTTLKEFNIGWN 901 (930)
Q Consensus 837 l~~~~~~~~~~~~~~~f~~L~~L~l~~~-----------~lp~L~~L~l~~c~~L~~l-p~~l~~l~~L~~L~l~~n 901 (930)
++.++...++ .+++|+.|.+++| .+++|+.|++++|. +..+ |..+..+++|++|++++|
T Consensus 311 l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 311 INKIDDNAFW-----GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTN 381 (455)
T ss_dssp CCEECTTTTT-----TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred ccccChhHhc-----CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCC
Confidence 3333322222 6899999999988 47999999999994 5554 778999999999999996
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1.2e-22 Score=227.08 Aligned_cols=296 Identities=15% Similarity=0.107 Sum_probs=224.2
Q ss_pred CcceeEEEEEecCCcccccc-ccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCccc-C
Q 002362 528 DEKVRHLLLIVGNGASFPVS-TCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRI-P 605 (930)
Q Consensus 528 ~~~~r~l~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p 605 (930)
...++++.+..+.+..++.. +..+++|++|.+.++.+... .+..|..+++|++|+|++|. +..+ |
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~------~~~~~~~l~~L~~L~L~~n~-------l~~~~~ 110 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI------DTYAFAYAHTIQKLYMGFNA-------IRYLPP 110 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEE------CTTTTTTCTTCCEEECCSSC-------CCCCCT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccccc------ChhhccCCCCcCEEECCCCC-------CCcCCH
Confidence 36789999998888776654 57799999999999875432 33458899999999999654 4444 5
Q ss_pred cccccCCCCCeeeccCCccccccccc-ccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCC
Q 002362 606 RNIERLVHLRYLNLSNQSIRKLPDTL-CELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTS 684 (930)
Q Consensus 606 ~~i~~L~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~ 684 (930)
..++++++|++|+|++|.++.+|..+ .++++|++|++++|......|..+..+++|++|++++|. +..+ .++.+++
T Consensus 111 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~~~~l~~ 187 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHV--DLSLIPS 187 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBC--CGGGCTT
T ss_pred HHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCcc--ccccccc
Confidence 66899999999999999999999874 899999999999998444445668999999999999984 4444 3577888
Q ss_pred CCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCcc
Q 002362 685 LRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNE 764 (930)
Q Consensus 685 L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~ 764 (930)
|+.|++..+... .+.....|+.|++.++..... + ....++|+.|++++|.+...
T Consensus 188 L~~L~l~~n~l~---------~~~~~~~L~~L~l~~n~l~~~-~---------~~~~~~L~~L~l~~n~l~~~------- 241 (390)
T 3o6n_A 188 LFHANVSYNLLS---------TLAIPIAVEELDASHNSINVV-R---------GPVNVELTILKLQHNNLTDT------- 241 (390)
T ss_dssp CSEEECCSSCCS---------EEECCSSCSEEECCSSCCCEE-E---------CCCCSSCCEEECCSSCCCCC-------
T ss_pred cceeeccccccc---------ccCCCCcceEEECCCCeeeec-c---------ccccccccEEECCCCCCccc-------
Confidence 888886544322 233445566666655543221 1 12246899999999987651
Q ss_pred chHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCCCCCCCCcceeeeccCcCceEeCCcc
Q 002362 765 DDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPPLGKLPSLEKLSISFMCSVKRVDNEI 844 (930)
Q Consensus 765 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~ 844 (930)
..+..+++|++|++++|.+.+..|..+..+++|+.|+|++|.+....+.++.+|+|+.|+|++|. ++.++..+
T Consensus 242 ------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 314 (390)
T 3o6n_A 242 ------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQ 314 (390)
T ss_dssp ------GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGH
T ss_pred ------HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCccc
Confidence 34567889999999999988755888889999999999999776544446788999999999774 33333222
Q ss_pred ccCcccccCccccceeeccc--------cccccceeeeccCC
Q 002362 845 LGIEITIAFPKLKSLTISWI--------IMPRLSSLTFDSCP 878 (930)
Q Consensus 845 ~~~~~~~~f~~L~~L~l~~~--------~lp~L~~L~l~~c~ 878 (930)
..+++|+.|.+++| .+++|+.|++++|+
T Consensus 315 ------~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 315 ------PQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp ------HHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred ------cccCcCCEEECCCCccceeCchhhccCCEEEcCCCC
Confidence 25789999999888 57889999998875
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=3.7e-22 Score=234.17 Aligned_cols=318 Identities=18% Similarity=0.134 Sum_probs=200.8
Q ss_pred CcceeEEEEEecCCcccc-ccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCc
Q 002362 528 DEKVRHLLLIVGNGASFP-VSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPR 606 (930)
Q Consensus 528 ~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~ 606 (930)
...++++.+..+.+..++ ..+..+++|++|+++++.... .++..|.++++|++|+|++|... .+ ..|.
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~----~~-~~~~ 117 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS------LSSSWFGPLSSLKYLNLMGNPYQ----TL-GVTS 117 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS------CCHHHHTTCTTCCEEECTTCCCS----SS-CSSC
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc------cCHHHhccCCCCcEEECCCCccc----cc-chhh
Confidence 457888998888877654 568889999999999996532 24556889999999999966432 11 3467
Q ss_pred ccccCCCCCeeeccCCc-ccccc-cccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcC-CCCC
Q 002362 607 NIERLVHLRYLNLSNQS-IRKLP-DTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGI-GRLT 683 (930)
Q Consensus 607 ~i~~L~~Lr~L~L~~~~-i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i-~~l~ 683 (930)
.++++++|++|++++|. +..+| ..+.++++|++|++++|......|..+..+++|++|+++++. ...+|..+ +.++
T Consensus 118 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~ 196 (549)
T 2z81_A 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILS 196 (549)
T ss_dssp SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHSTT
T ss_pred hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHhhcc
Confidence 88899999999999988 67776 478889999999999888555677777666666666555442 12222111 2233
Q ss_pred CCCcCCceEeCCCCC---------------------------------------------------------cC------
Q 002362 684 SLRTLDEFYVSGGGG---------------------------------------------------------ID------ 700 (930)
Q Consensus 684 ~L~~L~~~~~~~~~~---------------------------------------------------------~~------ 700 (930)
+|+.|++..+..... +.
T Consensus 197 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 276 (549)
T 2z81_A 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276 (549)
T ss_dssp TBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTC
T ss_pred cccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhh
Confidence 333333322211110 00
Q ss_pred ----------------------------------------------CCccccc-ccccCCCcCCeeeeecccCCCChhhh
Q 002362 701 ----------------------------------------------GRKACRL-ESLRSLELLQVCGIRRLGNVTDVGEA 733 (930)
Q Consensus 701 ----------------------------------------------~~~~~~l-~~L~~L~~L~~~~~~~~~~~~~~~~~ 733 (930)
..++..+ ..+++|+.|++.++...+..+ .
T Consensus 277 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~----~ 352 (549)
T 2z81_A 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL----K 352 (549)
T ss_dssp CCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHH----H
T ss_pred hhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccc----c
Confidence 0000001 123333333333333211100 0
Q ss_pred hhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCC
Q 002362 734 KRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCEN 813 (930)
Q Consensus 734 ~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~ 813 (930)
....+..+++|+.|++++|.+... ......+..+++|++|++++|.+.. +|.++..+++|+.|+|++|.+
T Consensus 353 ~~~~~~~l~~L~~L~Ls~N~l~~~---------~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 353 NSACKGAWPSLQTLVLSQNHLRSM---------QKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp HHTCTTSSTTCCEEECTTSCCCCH---------HHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCC
T ss_pred chhhhhccccCcEEEccCCccccc---------ccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCc
Confidence 012356778899999999887651 0011345667888888888888876 888877778888888887765
Q ss_pred CCCCCC------------------CCCCCCcceeeeccCcCceEeCCccccCcccccCccccceeeccc-----------
Q 002362 814 CEKLPP------------------LGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWI----------- 864 (930)
Q Consensus 814 ~~~l~~------------------l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~----------- 864 (930)
...... .+.+++|+.|+|++|. ++.++. ...+++|+.|++++|
T Consensus 423 ~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~-l~~ip~-------~~~l~~L~~L~Ls~N~l~~~~~~~~~ 494 (549)
T 2z81_A 423 RVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK-LKTLPD-------ASLFPVLLVMKISRNQLKSVPDGIFD 494 (549)
T ss_dssp SCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC-CSSCCC-------GGGCTTCCEEECCSSCCCCCCTTGGG
T ss_pred ccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCc-cCcCCC-------cccCccCCEEecCCCccCCcCHHHHh
Confidence 421111 1367778888887663 333332 126899999999988
Q ss_pred cccccceeeeccCCc
Q 002362 865 IMPRLSSLTFDSCPK 879 (930)
Q Consensus 865 ~lp~L~~L~l~~c~~ 879 (930)
.+++|+.|++++|+.
T Consensus 495 ~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 495 RLTSLQKIWLHTNPW 509 (549)
T ss_dssp GCTTCCEEECCSSCB
T ss_pred cCcccCEEEecCCCc
Confidence 467899999999863
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=6e-22 Score=227.77 Aligned_cols=296 Identities=17% Similarity=0.133 Sum_probs=230.7
Q ss_pred cCcceeEEEEEecCCccc-cccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccC
Q 002362 527 FDEKVRHLLLIVGNGASF-PVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIP 605 (930)
Q Consensus 527 ~~~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp 605 (930)
.+..+++|.+..+.+..+ +..+..+++|++|.+.++.+... .+..|.++++|++|+|++| .+..+|
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~------~~~~~~~l~~L~~L~L~~n-------~l~~~~ 96 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV------EPGAFNNLFNLRTLGLRSN-------RLKLIP 96 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE------CTTTTTTCTTCCEEECCSS-------CCCSCC
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe------ChhhhhCCccCCEEECCCC-------cCCccC
Confidence 567899999999988766 45788999999999999865332 3445889999999999954 456666
Q ss_pred c-ccccCCCCCeeeccCCccccc-ccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCC-cCCCC
Q 002362 606 R-NIERLVHLRYLNLSNQSIRKL-PDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPV-GIGRL 682 (930)
Q Consensus 606 ~-~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~l 682 (930)
. .++++++|++|+|++|.+..+ |..+.++++|++|++++|......|..+..+++|++|++++| .+..+|. .++.+
T Consensus 97 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l 175 (477)
T 2id5_A 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHL 175 (477)
T ss_dssp TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTC
T ss_pred cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhccc
Confidence 5 478999999999999999876 567899999999999999855555778999999999999999 4555554 58899
Q ss_pred CCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCC
Q 002362 683 TSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRK 762 (930)
Q Consensus 683 ~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~ 762 (930)
++|+.|++..+.... .....+..+++|+.|++.++...+.++. ......+|+.|++++|.+...
T Consensus 176 ~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~-------~~~~~~~L~~L~l~~n~l~~~----- 239 (477)
T 2id5_A 176 HGLIVLRLRHLNINA----IRDYSFKRLYRLKVLEISHWPYLDTMTP-------NCLYGLNLTSLSITHCNLTAV----- 239 (477)
T ss_dssp TTCCEEEEESCCCCE----ECTTCSCSCTTCCEEEEECCTTCCEECT-------TTTTTCCCSEEEEESSCCCSC-----
T ss_pred CCCcEEeCCCCcCcE----eChhhcccCcccceeeCCCCccccccCc-------ccccCccccEEECcCCccccc-----
Confidence 999999987665433 2244577788888888877766555443 233445899999999988752
Q ss_pred ccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCC-CCCCCCcceeeeccCcCceEeC
Q 002362 763 NEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP-LGKLPSLEKLSISFMCSVKRVD 841 (930)
Q Consensus 763 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~ 841 (930)
....+..+++|+.|++++|.+....+..+..+++|+.|+|++|.+....|. +..+++|+.|+|++|. ++.++
T Consensus 240 ------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 312 (477)
T 2id5_A 240 ------PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLE 312 (477)
T ss_dssp ------CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCC
T ss_pred ------CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeC
Confidence 123567789999999999998874556788999999999999988776554 8899999999999763 43333
Q ss_pred CccccCcccccCccccceeeccc
Q 002362 842 NEILGIEITIAFPKLKSLTISWI 864 (930)
Q Consensus 842 ~~~~~~~~~~~f~~L~~L~l~~~ 864 (930)
...+. .+++|+.|.+++|
T Consensus 313 ~~~~~-----~l~~L~~L~l~~N 330 (477)
T 2id5_A 313 ESVFH-----SVGNLETLILDSN 330 (477)
T ss_dssp GGGBS-----CGGGCCEEECCSS
T ss_pred HhHcC-----CCcccCEEEccCC
Confidence 33222 5788888888887
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=7.9e-22 Score=237.56 Aligned_cols=260 Identities=17% Similarity=0.038 Sum_probs=167.7
Q ss_pred EecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCe
Q 002362 537 IVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRY 616 (930)
Q Consensus 537 ~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~ 616 (930)
....+..+|..+. +++++|+++++.+... ++..|.++++|++|+|++|... ...|..++++++|++
T Consensus 12 s~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~ 77 (680)
T 1ziw_A 12 SHLKLTQVPDDLP--TNITVLNLTHNQLRRL------PAANFTRYSQLTSLDVGFNTIS------KLEPELCQKLPMLKV 77 (680)
T ss_dssp CSSCCSSCCSCSC--TTCSEEECCSSCCCCC------CGGGGGGGTTCSEEECCSSCCC------CCCTTHHHHCTTCCE
T ss_pred CCCCccccccccC--CCCcEEECCCCCCCCc------CHHHHhCCCcCcEEECCCCccC------ccCHHHHhcccCcCE
Confidence 3334455555443 7899999999875332 3445889999999999965432 224678999999999
Q ss_pred eeccCCccccccc-ccccCCcccEEeccCCCCCcccc-ccccccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeC
Q 002362 617 LNLSNQSIRKLPD-TLCELYNLQKLDISCCCKLKELP-QGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVS 694 (930)
Q Consensus 617 L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 694 (930)
|+|++|.++.+|. .++++++|++|++++|. +..+| ..++++++|++|++++|......|..++++++|++|++..+.
T Consensus 78 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 78 LNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred EECCCCccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence 9999999999987 59999999999999998 55555 679999999999999996655666778999999999987654
Q ss_pred CCCCcCCCccccc--ccccCCCcCCeeeeecccCCCChhhhhhccccCCCCC---------------------------C
Q 002362 695 GGGGIDGRKACRL--ESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNL---------------------------S 745 (930)
Q Consensus 695 ~~~~~~~~~~~~l--~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L---------------------------~ 745 (930)
... ..+..+ ..+++|+.|++.++...+..+. .+..+.+| +
T Consensus 157 l~~----~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~ 225 (680)
T 1ziw_A 157 IQA----LKSEELDIFANSSLKKLELSSNQIKEFSPG-------CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225 (680)
T ss_dssp CCC----BCHHHHGGGTTCEESEEECTTCCCCCBCTT-------GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCC
T ss_pred ccc----cCHHHhhccccccccEEECCCCcccccChh-------hhhhhhhhhhhhccccccChhhHHHHHHHhhhcccc
Confidence 332 112222 2346677777666654333222 23334444 4
Q ss_pred eeEEEeeCCCCCCcCCCccchHHHhhcCCCC--CCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCC-CCC
Q 002362 746 CLKLLFNKEEGDGQRRKNEDDQLLLEFLQPP--PNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP-LGK 822 (930)
Q Consensus 746 ~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~ 822 (930)
.|++++|.+.+. .+..+..+ ++|+.|++++|.+.+..|.++..+++|+.|+|++|.+.+..|. ++.
T Consensus 226 ~L~L~~n~l~~~-----------~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 294 (680)
T 1ziw_A 226 NLSLSNSQLSTT-----------SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG 294 (680)
T ss_dssp EEECTTSCCCEE-----------CTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT
T ss_pred EEEccCCccccc-----------ChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcC
Confidence 444444443321 11112222 2355555555555543344555555555555555554444332 555
Q ss_pred CCCcceeeecc
Q 002362 823 LPSLEKLSISF 833 (930)
Q Consensus 823 l~~L~~L~L~~ 833 (930)
+++|+.|++++
T Consensus 295 l~~L~~L~L~~ 305 (680)
T 1ziw_A 295 LFNVRYLNLKR 305 (680)
T ss_dssp CTTCCEEECTT
T ss_pred CCCccEEeccc
Confidence 55555555554
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=2e-22 Score=237.84 Aligned_cols=296 Identities=15% Similarity=0.108 Sum_probs=219.7
Q ss_pred cceeEEEEEecCCcccccc-ccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccC-c
Q 002362 529 EKVRHLLLIVGNGASFPVS-TCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIP-R 606 (930)
Q Consensus 529 ~~~r~l~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~ 606 (930)
..++.+.+..+.+..++.. +..+++|++|.+.++.+... .+..|..+++|++|+|++|. +..+| .
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n~-------l~~~~~~ 117 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI------DTYAFAYAHTIQKLYMGFNA-------IRYLPPH 117 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEE------CTTTTTTCTTCCEEECCSSC-------CCCCCTT
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCC------ChHHhcCCCCCCEEECCCCc-------CCCCCHH
Confidence 4677888877777666554 56789999999999875432 34458899999999999654 44444 5
Q ss_pred ccccCCCCCeeeccCCcccccccc-cccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCC
Q 002362 607 NIERLVHLRYLNLSNQSIRKLPDT-LCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSL 685 (930)
Q Consensus 607 ~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L 685 (930)
.++++++|++|+|++|.++.+|.. ++++++|++|++++|......|..+..+++|++|++++| .+..++ ++.+++|
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~--~~~l~~L 194 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPSL 194 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC--GGGCTTC
T ss_pred HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC--hhhhhhh
Confidence 679999999999999999999887 489999999999999855555667999999999999998 445444 5678888
Q ss_pred CcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccc
Q 002362 686 RTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNED 765 (930)
Q Consensus 686 ~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~ 765 (930)
+.|++..+... .+.....|+.|++.++....... ...++|+.|+|++|.+.+
T Consensus 195 ~~L~l~~n~l~---------~l~~~~~L~~L~ls~n~l~~~~~----------~~~~~L~~L~L~~n~l~~--------- 246 (597)
T 3oja_B 195 FHANVSYNLLS---------TLAIPIAVEELDASHNSINVVRG----------PVNVELTILKLQHNNLTD--------- 246 (597)
T ss_dssp SEEECCSSCCS---------EEECCTTCSEEECCSSCCCEEEC----------SCCSCCCEEECCSSCCCC---------
T ss_pred hhhhcccCccc---------cccCCchhheeeccCCccccccc----------ccCCCCCEEECCCCCCCC---------
Confidence 88876544322 23444556666665554322111 112578999999888765
Q ss_pred hHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCCCCCCCCcceeeeccCcCceEeCCccc
Q 002362 766 DQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPPLGKLPSLEKLSISFMCSVKRVDNEIL 845 (930)
Q Consensus 766 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~ 845 (930)
+..+..+++|+.|++++|.+.+..|.++..+++|+.|+|++|.+....+.++.+|+|+.|+|++|. +..++..+
T Consensus 247 ----~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~- 320 (597)
T 3oja_B 247 ----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQ- 320 (597)
T ss_dssp ----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGH-
T ss_pred ----ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCccc-
Confidence 234567788999999999888756888888999999999998776543446778999999998764 33333222
Q ss_pred cCcccccCccccceeeccc--------cccccceeeeccCCc
Q 002362 846 GIEITIAFPKLKSLTISWI--------IMPRLSSLTFDSCPK 879 (930)
Q Consensus 846 ~~~~~~~f~~L~~L~l~~~--------~lp~L~~L~l~~c~~ 879 (930)
..+++|+.|.+++| .+++|+.|++++|+.
T Consensus 321 -----~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 321 -----PQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp -----HHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred -----ccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCC
Confidence 15788888888887 578899999988763
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=1.3e-22 Score=218.81 Aligned_cols=229 Identities=21% Similarity=0.235 Sum_probs=152.2
Q ss_pred hhcCCcceEEEcCC-cccccCCCCCcccCcccccCCCCCeeeccCCccc-ccccccccCCcccEEeccCCCCCccccccc
Q 002362 578 FRESTSLRVLEFGD-WARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIR-KLPDTLCELYNLQKLDISCCCKLKELPQGI 655 (930)
Q Consensus 578 ~~~~~~Lr~L~L~~-~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i 655 (930)
+.++++|++|+|++ |... ..+|..++++++|++|+|++|.++ .+|..+.++++|++|++++|.....+|..+
T Consensus 72 l~~l~~L~~L~L~~~n~l~------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 145 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLV------GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145 (313)
T ss_dssp GGGCTTCSEEEEEEETTEE------SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred HhCCCCCCeeeCCCCCccc------ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH
Confidence 55566666666662 2211 245666666666666666666665 556666666666666666666333566666
Q ss_pred cccCCcceEeecCcccccccCCcCCCCC-CCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhh
Q 002362 656 GKLINMRHLLNYGTISLRYMPVGIGRLT-SLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAK 734 (930)
Q Consensus 656 ~~L~~L~~L~l~~~~~~~~~p~~i~~l~-~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~ 734 (930)
..+++|++|++++|.....+|..++.++ +|+.|++..+... +..+..+..+. |+.|++.++...+..+.
T Consensus 146 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~----~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~----- 215 (313)
T 1ogq_A 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT----GKIPPTFANLN-LAFVDLSRNMLEGDASV----- 215 (313)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE----EECCGGGGGCC-CSEEECCSSEEEECCGG-----
T ss_pred hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee----ccCChHHhCCc-ccEEECcCCcccCcCCH-----
Confidence 6666666666666644335666666665 6666655433221 11233444444 55555555554433332
Q ss_pred hccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCC
Q 002362 735 RLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENC 814 (930)
Q Consensus 735 ~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~ 814 (930)
.+..+++|+.|++++|.+... +..+..+++|++|++++|.+.+.+|.++..+++|+.|+|++|.+.
T Consensus 216 --~~~~l~~L~~L~L~~N~l~~~------------~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 216 --LFGSDKNTQKIHLAKNSLAFD------------LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp --GCCTTSCCSEEECCSSEECCB------------GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred --HHhcCCCCCEEECCCCceeee------------cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 567788999999999887652 334677899999999999998668999999999999999999988
Q ss_pred CCCCCCCCCCCcceeeeccCcC
Q 002362 815 EKLPPLGKLPSLEKLSISFMCS 836 (930)
Q Consensus 815 ~~l~~l~~l~~L~~L~L~~~~~ 836 (930)
+.+|..+.+++|+.|++.+++.
T Consensus 282 ~~ip~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 282 GEIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp EECCCSTTGGGSCGGGTCSSSE
T ss_pred ccCCCCccccccChHHhcCCCC
Confidence 8888888999999999987653
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=1.9e-21 Score=220.40 Aligned_cols=229 Identities=18% Similarity=0.099 Sum_probs=173.9
Q ss_pred cccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcc
Q 002362 545 PVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSI 624 (930)
Q Consensus 545 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i 624 (930)
+..+..+++|++|+++++.+... + .+..+++|++|+|++|. +..+| ++.+++|++|++++|.+
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~-------~-~l~~l~~L~~L~Ls~n~-------l~~~~--~~~l~~L~~L~Ls~N~l 97 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDM-------T-GIEKLTGLTKLICTSNN-------ITTLD--LSQNTNLTYLACDSNKL 97 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCC-------T-TGGGCTTCSEEECCSSC-------CSCCC--CTTCTTCSEEECCSSCC
T ss_pred ccChhHcCCCCEEEccCCCcccC-------h-hhcccCCCCEEEccCCc-------CCeEc--cccCCCCCEEECcCCCC
Confidence 34566789999999999865322 2 37889999999999654 44555 88999999999999999
Q ss_pred cccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCcc
Q 002362 625 RKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKA 704 (930)
Q Consensus 625 ~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~ 704 (930)
+.+| ++++++|++|++++|. +..+| ++.+++|++|++++| .+..+| ++.+++|+.|++..+.... .
T Consensus 98 ~~~~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~------~ 163 (457)
T 3bz5_A 98 TNLD--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKIT------K 163 (457)
T ss_dssp SCCC--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCC------C
T ss_pred ceee--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCccc------c
Confidence 9886 8899999999999997 66676 889999999999988 445554 7889999999876653332 1
Q ss_pred cccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEE
Q 002362 705 CRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLI 784 (930)
Q Consensus 705 ~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 784 (930)
..+..+++|+.|++.++...+ + .+..+++|+.|++++|.+++. .+..+++|+.|++
T Consensus 164 ~~~~~l~~L~~L~ls~n~l~~-l---------~l~~l~~L~~L~l~~N~l~~~--------------~l~~l~~L~~L~L 219 (457)
T 3bz5_A 164 LDVTPQTQLTTLDCSFNKITE-L---------DVSQNKLLNRLNCDTNNITKL--------------DLNQNIQLTFLDC 219 (457)
T ss_dssp CCCTTCTTCCEEECCSSCCCC-C---------CCTTCTTCCEEECCSSCCSCC--------------CCTTCTTCSEEEC
T ss_pred cccccCCcCCEEECCCCccce-e---------ccccCCCCCEEECcCCcCCee--------------ccccCCCCCEEEC
Confidence 146667777777766664432 1 256778899999998887651 3667889999999
Q ss_pred eeccCCCCCCcccccccCccEEEeeCCCCCCCCCCCCCCCCcceeeecc
Q 002362 785 GSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPPLGKLPSLEKLSISF 833 (930)
Q Consensus 785 ~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~ 833 (930)
++|.+.+ +| +..+++|+.|++++|.+.+. | ++.+++|+.|++++
T Consensus 220 s~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~-~-~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 220 SSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL-D-VSTLSKLTTLHCIQ 263 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECTT
T ss_pred cCCcccc-cC--ccccCCCCEEEeeCCcCCCc-C-HHHCCCCCEEeccC
Confidence 9999888 77 77889999999999977653 2 55667676666553
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=5.2e-21 Score=208.49 Aligned_cols=291 Identities=20% Similarity=0.217 Sum_probs=212.7
Q ss_pred CccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCccc-CcccccCCCCCeeeccCCccccc-ccc
Q 002362 553 RMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRI-PRNIERLVHLRYLNLSNQSIRKL-PDT 630 (930)
Q Consensus 553 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~l-p~~ 630 (930)
+++.+.+.++..... +.. -.+.|++|++++| .+..+ |..++++++|++|+|++|.++.+ |..
T Consensus 34 ~l~~l~~~~~~l~~i------p~~---~~~~l~~L~l~~n-------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 97 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV------PKE---ISPDTTLLDLQNN-------DISELRKDDFKGLQHLYALVLVNNKISKIHEKA 97 (332)
T ss_dssp ETTEEECCSSCCSSC------CSC---CCTTCCEEECCSS-------CCCEECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred cCCEEECCCCCcccc------CCC---CCCCCeEEECCCC-------cCCccCHhHhhCCCCCcEEECCCCccCccCHhH
Confidence 689999988864321 111 1368999999955 45555 45899999999999999999977 778
Q ss_pred cccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCC-cCCCCCCCCcCCceEeCCCCCcCCCccccccc
Q 002362 631 LCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPV-GIGRLTSLRTLDEFYVSGGGGIDGRKACRLES 709 (930)
Q Consensus 631 i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~ 709 (930)
++++++|++|++++|. +..+|..+. ++|++|++++| .+..+|. .++.+++|++|++..+.... .+..+..+..
T Consensus 98 ~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~ 171 (332)
T 2ft3_A 98 FSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLEN--SGFEPGAFDG 171 (332)
T ss_dssp STTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBG--GGSCTTSSCS
T ss_pred hhCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCcccc--CCCCcccccC
Confidence 9999999999999998 778888776 89999999998 4556665 48899999999987655431 0112344555
Q ss_pred ccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccC
Q 002362 710 LRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRG 789 (930)
Q Consensus 710 L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 789 (930)
+ +|+.|++.++.... ++. .+ .++|+.|++++|.+... .+..+..+++|++|++++|.+
T Consensus 172 l-~L~~L~l~~n~l~~-l~~-------~~--~~~L~~L~l~~n~i~~~-----------~~~~l~~l~~L~~L~L~~N~l 229 (332)
T 2ft3_A 172 L-KLNYLRISEAKLTG-IPK-------DL--PETLNELHLDHNKIQAI-----------ELEDLLRYSKLYRLGLGHNQI 229 (332)
T ss_dssp C-CCSCCBCCSSBCSS-CCS-------SS--CSSCSCCBCCSSCCCCC-----------CTTSSTTCTTCSCCBCCSSCC
T ss_pred C-ccCEEECcCCCCCc-cCc-------cc--cCCCCEEECCCCcCCcc-----------CHHHhcCCCCCCEEECCCCcC
Confidence 5 77888777766533 332 12 26899999999988763 235677889999999999999
Q ss_pred CCCCCcccccccCccEEEeeCCCCCCCCCC-CCCCCCcceeeeccCcCceEeCCccccCcccccCccccceeeccccccc
Q 002362 790 KTVFPPWMMSLTNLRSLDLDDCENCEKLPP-LGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWIIMPR 868 (930)
Q Consensus 790 ~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~lp~ 868 (930)
.+..|.++..+++|+.|+|++|.+. .+|. ++.+++|+.|++++|. ++.++...+. .+.. ...+++
T Consensus 230 ~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~--------~~~~----~~~~~~ 295 (332)
T 2ft3_A 230 RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFC--------PVGF----GVKRAY 295 (332)
T ss_dssp CCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC-CCBCCTTSSS--------CSSC----CSSSCC
T ss_pred CcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCC-CCccChhHcc--------cccc----cccccc
Confidence 8855668899999999999999877 5554 8999999999999764 4333332221 1100 002567
Q ss_pred cceeeeccCCcc--CCCCCCCCCCCCccEEEEecC
Q 002362 869 LSSLTFDSCPKL--KALPDHFHQTTTLKEFNIGWN 901 (930)
Q Consensus 869 L~~L~l~~c~~L--~~lp~~l~~l~~L~~L~l~~n 901 (930)
|+.|++.+|+.. ...|..+..+++|+.+++++|
T Consensus 296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 888899888754 345566788999999999985
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=5.7e-21 Score=208.05 Aligned_cols=294 Identities=16% Similarity=0.123 Sum_probs=199.7
Q ss_pred CccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCc-ccccCCCCCeeeccCCccccc-ccc
Q 002362 553 RMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPR-NIERLVHLRYLNLSNQSIRKL-PDT 630 (930)
Q Consensus 553 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~l-p~~ 630 (930)
+++.+.+.++..... +. .-.+.|++|+|++| .+..+|. .++++++|++|+|++|.++.+ |..
T Consensus 32 ~l~~l~~~~~~l~~l------p~---~~~~~l~~L~L~~n-------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (330)
T 1xku_A 32 HLRVVQCSDLGLEKV------PK---DLPPDTALLDLQNN-------KITEIKDGDFKNLKNLHTLILINNKISKISPGA 95 (330)
T ss_dssp ETTEEECTTSCCCSC------CC---SCCTTCCEEECCSS-------CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred CCeEEEecCCCcccc------Cc---cCCCCCeEEECCCC-------cCCEeChhhhccCCCCCEEECCCCcCCeeCHHH
Confidence 788888887753321 11 11367899999955 4455554 788999999999999999877 778
Q ss_pred cccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCcccccccc
Q 002362 631 LCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESL 710 (930)
Q Consensus 631 i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L 710 (930)
++.+++|++|++++|. +..+|..+. ++|++|++++|......+..++.+++|++|++..+.... .+..+..+..+
T Consensus 96 ~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l 170 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS--SGIENGAFQGM 170 (330)
T ss_dssp TTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG--GGBCTTGGGGC
T ss_pred hcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc--cCcChhhccCC
Confidence 9999999999999988 778887765 789999999884433333457889999999876654421 01123456667
Q ss_pred cCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCC
Q 002362 711 RSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGK 790 (930)
Q Consensus 711 ~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 790 (930)
++|+.|++.++.... ++. .+ .++|+.|++++|.+... .+..+..+++|++|++++|.+.
T Consensus 171 ~~L~~L~l~~n~l~~-l~~-------~~--~~~L~~L~l~~n~l~~~-----------~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 171 KKLSYIRIADTNITT-IPQ-------GL--PPSLTELHLDGNKITKV-----------DAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp TTCCEEECCSSCCCS-CCS-------SC--CTTCSEEECTTSCCCEE-----------CTGGGTTCTTCCEEECCSSCCC
T ss_pred CCcCEEECCCCcccc-CCc-------cc--cccCCEEECCCCcCCcc-----------CHHHhcCCCCCCEEECCCCcCc
Confidence 777777666654432 222 11 26888888888877642 2445677888999999988887
Q ss_pred CCCCcccccccCccEEEeeCCCCCCCCCCCCCCCCcceeeeccCcCceEeCCccccCcccccCccccceeeccccccccc
Q 002362 791 TVFPPWMMSLTNLRSLDLDDCENCEKLPPLGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWIIMPRLS 870 (930)
Q Consensus 791 ~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~lp~L~ 870 (930)
+..+.++..+++|+.|+|++|.+......+..+++|+.|++++|. ++.++...+. .... ....+.|+
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~--------~~~~----~~~~~~l~ 296 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFC--------PPGY----NTKKASYS 296 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSS--------CSSC----CTTSCCCS
T ss_pred eeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhcC--------Cccc----cccccccc
Confidence 744557888889999999988776433348888899999998664 3333322221 1100 00246778
Q ss_pred eeeeccCCccC--CCCCCCCCCCCccEEEEecC
Q 002362 871 SLTFDSCPKLK--ALPDHFHQTTTLKEFNIGWN 901 (930)
Q Consensus 871 ~L~l~~c~~L~--~lp~~l~~l~~L~~L~l~~n 901 (930)
.|++.+|+... ..|..+..+++|+.+++++|
T Consensus 297 ~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp EEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ceEeecCcccccccCccccccccceeEEEeccc
Confidence 88888886432 33456777889999999886
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=9.2e-22 Score=212.07 Aligned_cols=255 Identities=18% Similarity=0.173 Sum_probs=193.9
Q ss_pred CcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccC-Cccc-ccccccccCCcccEEeccCCCCCccccccccccC
Q 002362 582 TSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSN-QSIR-KLPDTLCELYNLQKLDISCCCKLKELPQGIGKLI 659 (930)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~-~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~ 659 (930)
.+++.|+|++|... ....+|..++++++|++|+|++ |.+. .+|..++++++|++|++++|.....+|..+.+++
T Consensus 50 ~~l~~L~L~~~~l~----~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLP----KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCS----SCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCcc----CCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 47889999865432 1116899999999999999995 7776 7899999999999999999995568999999999
Q ss_pred CcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCccccccccc-CCCcCCeeeeecccCCCChhhhhhccc
Q 002362 660 NMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLR-SLELLQVCGIRRLGNVTDVGEAKRLEL 738 (930)
Q Consensus 660 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~~~~~~~~~~~~~~~~~~~~~l 738 (930)
+|++|++++|.....+|..++.+++|++|++..+... +.++..+..+. .|+.|++.++...+..+. .+
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~----~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-------~~ 194 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS----GAIPDSYGSFSKLFTSMTISRNRLTGKIPP-------TF 194 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE----EECCGGGGCCCTTCCEEECCSSEEEEECCG-------GG
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc----CcCCHHHhhhhhcCcEEECcCCeeeccCCh-------HH
Confidence 9999999999665588999999999999997765443 22355677776 788887777766544443 34
Q ss_pred cCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCC
Q 002362 739 DKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLP 818 (930)
Q Consensus 739 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~ 818 (930)
..++ |+.|++++|.+.+. .+..+..+++|+.|++++|.+.+ .+..+..+++|+.|+|++|.+.+.+|
T Consensus 195 ~~l~-L~~L~Ls~N~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p 261 (313)
T 1ogq_A 195 ANLN-LAFVDLSRNMLEGD-----------ASVLFGSDKNTQKIHLAKNSLAF-DLGKVGLSKNLNGLDLRNNRIYGTLP 261 (313)
T ss_dssp GGCC-CSEEECCSSEEEEC-----------CGGGCCTTSCCSEEECCSSEECC-BGGGCCCCTTCCEEECCSSCCEECCC
T ss_pred hCCc-ccEEECcCCcccCc-----------CCHHHhcCCCCCEEECCCCceee-ecCcccccCCCCEEECcCCcccCcCC
Confidence 4554 89999988876643 45667788899999999998887 44447788899999999998876666
Q ss_pred C-CCCCCCcceeeeccCcCceEeCCccccCcccccCccccceeeccccccccceeeeccCCccCCCC
Q 002362 819 P-LGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWIIMPRLSSLTFDSCPKLKALP 884 (930)
Q Consensus 819 ~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~lp~L~~L~l~~c~~L~~lp 884 (930)
. ++.+++|+.|+|++|.-...++. .. .+++|+.|++.+|+.+-..|
T Consensus 262 ~~l~~l~~L~~L~Ls~N~l~~~ip~-------------~~-------~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 262 QGLTQLKFLHSLNVSFNNLCGEIPQ-------------GG-------NLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCC-------------ST-------TGGGSCGGGTCSSSEEESTT
T ss_pred hHHhcCcCCCEEECcCCcccccCCC-------------Cc-------cccccChHHhcCCCCccCCC
Confidence 5 88889999999987642222221 11 25677777777776665544
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=5.1e-20 Score=200.63 Aligned_cols=261 Identities=17% Similarity=0.099 Sum_probs=198.8
Q ss_pred ceeEEEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCccc-Cccc
Q 002362 530 KVRHLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRI-PRNI 608 (930)
Q Consensus 530 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i 608 (930)
..+.+.+..+.+..+|..+ .+++++|.+.++.+... .+..|.++++|++|+|++| .+..+ |..+
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~------~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISEL------RKDDFKGLQHLYALVLVNN-------KISKIHEKAF 98 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEE------CTTTTTTCTTCCEEECCSS-------CCCEECGGGS
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCcc------CHhHhhCCCCCcEEECCCC-------ccCccCHhHh
Confidence 3566666666666666544 47899999999875432 3345889999999999965 34454 7789
Q ss_pred ccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccc-cccccCCcceEeecCcccc--cccCCcCCCCCCC
Q 002362 609 ERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQ-GIGKLINMRHLLNYGTISL--RYMPVGIGRLTSL 685 (930)
Q Consensus 609 ~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~--~~~p~~i~~l~~L 685 (930)
+++++|++|++++|.++.+|..+. ++|++|++++|. +..+|. .+..+++|++|++++|... ...|..++.+ +|
T Consensus 99 ~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L 174 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KL 174 (332)
T ss_dssp TTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CC
T ss_pred hCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-cc
Confidence 999999999999999999998876 899999999998 666665 4899999999999998542 2456677777 99
Q ss_pred CcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccc
Q 002362 686 RTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNED 765 (930)
Q Consensus 686 ~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~ 765 (930)
+.|++..+.... ++..+. ++|+.|++.++......+. .+..+++|+.|++++|.+...
T Consensus 175 ~~L~l~~n~l~~-----l~~~~~--~~L~~L~l~~n~i~~~~~~-------~l~~l~~L~~L~L~~N~l~~~-------- 232 (332)
T 2ft3_A 175 NYLRISEAKLTG-----IPKDLP--ETLNELHLDHNKIQAIELE-------DLLRYSKLYRLGLGHNQIRMI-------- 232 (332)
T ss_dssp SCCBCCSSBCSS-----CCSSSC--SSCSCCBCCSSCCCCCCTT-------SSTTCTTCSCCBCCSSCCCCC--------
T ss_pred CEEECcCCCCCc-----cCcccc--CCCCEEECCCCcCCccCHH-------HhcCCCCCCEEECCCCcCCcC--------
Confidence 999887665443 222222 6788888877765443333 577889999999999988763
Q ss_pred hHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCC-CCC------CCCcceeeeccCc
Q 002362 766 DQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP-LGK------LPSLEKLSISFMC 835 (930)
Q Consensus 766 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~------l~~L~~L~L~~~~ 835 (930)
.+..+..+++|+.|++++|.+.. +|.++..+++|+.|+|++|.+....+. +.. .++|+.|++.+++
T Consensus 233 ---~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 233 ---ENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp ---CTTGGGGCTTCCEEECCSSCCCB-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred ---ChhHhhCCCCCCEEECCCCcCee-cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence 23356678999999999999987 999999999999999999987653222 332 5779999999775
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=1e-20 Score=205.04 Aligned_cols=221 Identities=21% Similarity=0.324 Sum_probs=172.7
Q ss_pred CCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcccccccc
Q 002362 551 VKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPDT 630 (930)
Q Consensus 551 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~ 630 (930)
..+++.|++.++.... ++..+.++++|++|+|++| .+..+|..++++++|++|+|++|.++.+|..
T Consensus 80 ~~~l~~L~L~~n~l~~-------lp~~l~~l~~L~~L~L~~n-------~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~ 145 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-------FPDQAFRLSHLQHMTIDAA-------GLMELPDTMQQFAGLETLTLARNPLRALPAS 145 (328)
T ss_dssp STTCCEEEEESSCCSS-------CCSCGGGGTTCSEEEEESS-------CCCCCCSCGGGGTTCSEEEEESCCCCCCCGG
T ss_pred ccceeEEEccCCCchh-------cChhhhhCCCCCEEECCCC-------CccchhHHHhccCCCCEEECCCCccccCcHH
Confidence 3556666666665321 1222556888999999854 4567889999999999999999999999999
Q ss_pred cccCCcccEEeccCCCCCccccccccc---------cCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCC
Q 002362 631 LCELYNLQKLDISCCCKLKELPQGIGK---------LINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDG 701 (930)
Q Consensus 631 i~~L~~L~~L~l~~~~~~~~lp~~i~~---------L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~ 701 (930)
++++++|++|++++|.....+|..+.. +++|++|++++| .+..+|..++++++|++|++..+....
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~---- 220 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSA---- 220 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCC----
T ss_pred HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCc----
Confidence 999999999999998888889987765 888999988888 455778777777777777765432211
Q ss_pred CcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcce
Q 002362 702 RKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRK 781 (930)
Q Consensus 702 ~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 781 (930)
++. .+..+++|+.|++++|.+.+. ++..+..+++|++
T Consensus 221 -------------------------l~~-------~l~~l~~L~~L~Ls~n~~~~~-----------~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 221 -------------------------LGP-------AIHHLPKLEELDLRGCTALRN-----------YPPIFGGRAPLKR 257 (328)
T ss_dssp -------------------------CCG-------GGGGCTTCCEEECTTCTTCCB-----------CCCCTTCCCCCCE
T ss_pred -------------------------Cch-------hhccCCCCCEEECcCCcchhh-----------hHHHhcCCCCCCE
Confidence 111 245567788888888776553 4556778899999
Q ss_pred EEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCC-CCCCCCcceeeecc
Q 002362 782 LLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP-LGKLPSLEKLSISF 833 (930)
Q Consensus 782 L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~ 833 (930)
|++++|...+.+|.++..+++|+.|+|++|...+.+|. ++++++|+.+.+..
T Consensus 258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 99999888887899999999999999999999988887 99999999998874
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=1.7e-19 Score=204.36 Aligned_cols=296 Identities=21% Similarity=0.234 Sum_probs=189.2
Q ss_pred ccCcceeEEEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccC
Q 002362 526 SFDEKVRHLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIP 605 (930)
Q Consensus 526 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp 605 (930)
..+..++++.+..+.+..++. ..++|++|.++++...... ...++|++|++++| .+..+|
T Consensus 88 ~~~~~L~~L~l~~n~l~~lp~---~~~~L~~L~l~~n~l~~l~----------~~~~~L~~L~L~~n-------~l~~lp 147 (454)
T 1jl5_A 88 ELPPHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKALS----------DLPPLLEYLGVSNN-------QLEKLP 147 (454)
T ss_dssp SCCTTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCC----------SCCTTCCEEECCSS-------CCSSCC
T ss_pred CCcCCCCEEEccCCcCCcccc---ccCCCcEEECCCCccCccc----------CCCCCCCEEECcCC-------CCCCCc
Confidence 356778888888887776553 2478888988888643210 11258899999854 345577
Q ss_pred cccccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCC
Q 002362 606 RNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSL 685 (930)
Q Consensus 606 ~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L 685 (930)
.++++++|++|++++|.++.+|..+ .+|++|++++|. +..+| .++.+++|++|++++| .+..+|... ++|
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~~---~~L 217 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNN-SLKKLPDLP---LSL 217 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSS-CCSSCCCCC---TTC
T ss_pred -ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCC-cCCcCCCCc---Ccc
Confidence 5888899999999999888887654 588889999887 66677 5888899999998888 445566533 477
Q ss_pred CcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccc
Q 002362 686 RTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNED 765 (930)
Q Consensus 686 ~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~ 765 (930)
++|++..+.... ++ .+..+++|+.|++.++.... ++. ..++|+.|++++|.+.+
T Consensus 218 ~~L~l~~n~l~~-----lp-~~~~l~~L~~L~l~~N~l~~-l~~----------~~~~L~~L~l~~N~l~~--------- 271 (454)
T 1jl5_A 218 ESIVAGNNILEE-----LP-ELQNLPFLTTIYADNNLLKT-LPD----------LPPSLEALNVRDNYLTD--------- 271 (454)
T ss_dssp CEEECCSSCCSS-----CC-CCTTCTTCCEEECCSSCCSS-CCS----------CCTTCCEEECCSSCCSC---------
T ss_pred cEEECcCCcCCc-----cc-ccCCCCCCCEEECCCCcCCc-ccc----------cccccCEEECCCCcccc---------
Confidence 777766554332 23 36667777777766654432 222 13678888888887664
Q ss_pred hHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCCCCCC-CCcceeeeccCcCceEeCCcc
Q 002362 766 DQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPPLGKL-PSLEKLSISFMCSVKRVDNEI 844 (930)
Q Consensus 766 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l-~~L~~L~L~~~~~l~~~~~~~ 844 (930)
++. .+++|+.|++++|.+.+ +|.. .++|+.|++++|.+.+ ++ .+ ++|+.|++++|. +
T Consensus 272 ---l~~---~~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~---~~~~~L~~L~Ls~N~-l------- 329 (454)
T 1jl5_A 272 ---LPE---LPQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LC---DLPPSLEELNVSNNK-L------- 329 (454)
T ss_dssp ---CCC---CCTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-EC---CCCTTCCEEECCSSC-C-------
T ss_pred ---cCc---ccCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-cc---CCcCcCCEEECCCCc-c-------
Confidence 121 23678888888887766 4432 2577788888776543 22 23 477888887543 2
Q ss_pred ccCcccccCccccceeeccc-------cccccceeeeccCCccC--CCCCCCCCC-------------CCccEEEEecC
Q 002362 845 LGIEITIAFPKLKSLTISWI-------IMPRLSSLTFDSCPKLK--ALPDHFHQT-------------TTLKEFNIGWN 901 (930)
Q Consensus 845 ~~~~~~~~f~~L~~L~l~~~-------~lp~L~~L~l~~c~~L~--~lp~~l~~l-------------~~L~~L~l~~n 901 (930)
.+.+ ..+++|+.|.+++| .+++|+.|++++|+... .+|..+..+ ++|+.|++++|
T Consensus 330 ~~lp--~~~~~L~~L~L~~N~l~~lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N 406 (454)
T 1jl5_A 330 IELP--ALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406 (454)
T ss_dssp SCCC--CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------
T ss_pred cccc--ccCCcCCEEECCCCccccccchhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC
Confidence 1111 14577788877776 35688888888885433 466666666 78999999886
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=5.6e-20 Score=219.82 Aligned_cols=355 Identities=15% Similarity=0.126 Sum_probs=225.2
Q ss_pred cCcceeEEEEEecCCcccc-ccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccC
Q 002362 527 FDEKVRHLLLIVGNGASFP-VSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIP 605 (930)
Q Consensus 527 ~~~~~r~l~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp 605 (930)
.|..+++|.+..+.+..++ ..+..+++|++|++++|.+... .+..|.++++|++|+|++| .+..+|
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i------~~~~f~~L~~L~~L~Ls~N-------~l~~l~ 116 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI------EDGAYQSLSHLSTLILTGN-------PIQSLA 116 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE------CTTTTTTCTTCCEEECTTC-------CCCEEC
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc------ChhHhcCCCCCCEEEccCC-------cCCCCC
Confidence 6778999999999988775 4688999999999999975432 4556899999999999965 466676
Q ss_pred c-ccccCCCCCeeeccCCccccccc-ccccCCcccEEeccCCCCCc-cccccccccCCcceEeecCcccccccCCcCCCC
Q 002362 606 R-NIERLVHLRYLNLSNQSIRKLPD-TLCELYNLQKLDISCCCKLK-ELPQGIGKLINMRHLLNYGTISLRYMPVGIGRL 682 (930)
Q Consensus 606 ~-~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l 682 (930)
. .|++|.+|++|+|++|.++.+|. .+++|++|++|++++|.... .+|..+..+++|++|++++|......|..++.+
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 4 58999999999999999999876 58999999999999998433 468888999999999999884333233333333
Q ss_pred CCCCcCCceEeCCCCC------------------------------------------------------cCCCcc----
Q 002362 683 TSLRTLDEFYVSGGGG------------------------------------------------------IDGRKA---- 704 (930)
Q Consensus 683 ~~L~~L~~~~~~~~~~------------------------------------------------------~~~~~~---- 704 (930)
.+++.+........+. +.....
T Consensus 197 ~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 276 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 276 (635)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG
T ss_pred hhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc
Confidence 3222211110000000 000000
Q ss_pred -----------------------cc----------------------cccccCCCcCCeeeeecccCCCCh-hh------
Q 002362 705 -----------------------CR----------------------LESLRSLELLQVCGIRRLGNVTDV-GE------ 732 (930)
Q Consensus 705 -----------------------~~----------------------l~~L~~L~~L~~~~~~~~~~~~~~-~~------ 732 (930)
.. +.....|+.|.+..+......... ..
T Consensus 277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l 356 (635)
T 4g8a_A 277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 356 (635)
T ss_dssp GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEE
T ss_pred cccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccc
Confidence 00 000111222222211110000000 00
Q ss_pred -----hhhccccCCCCCCeeEEEeeCCCCCCc--------------------------C--C-----------CccchHH
Q 002362 733 -----AKRLELDKMKNLSCLKLLFNKEEGDGQ--------------------------R--R-----------KNEDDQL 768 (930)
Q Consensus 733 -----~~~~~l~~~~~L~~L~L~~~~~~~~~~--------------------------~--~-----------~~~~~~~ 768 (930)
........+++|+.|+++.|.+..... . . .......
T Consensus 357 ~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 436 (635)
T 4g8a_A 357 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 436 (635)
T ss_dssp ESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTT
T ss_pred ccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccc
Confidence 000011234566777766654421000 0 0 0000000
Q ss_pred HhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCC-CCC-CCCCCCcceeeeccCcCceEeCCcccc
Q 002362 769 LLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEK-LPP-LGKLPSLEKLSISFMCSVKRVDNEILG 846 (930)
Q Consensus 769 ~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~-l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~ 846 (930)
....+..+++++.+++++|.+....|..+..+++|+.|+|++|..... .|. ++.+++|+.|+|++|. ++.++...++
T Consensus 437 ~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~ 515 (635)
T 4g8a_A 437 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN 515 (635)
T ss_dssp SSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTT
T ss_pred cccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChHHHc
Confidence 112344566777888887777665566677889999999999875543 343 8899999999999874 5555433332
Q ss_pred CcccccCccccceeeccc-----------cccccceeeeccCCccCCC-CCCCCCC-CCccEEEEecC
Q 002362 847 IEITIAFPKLKSLTISWI-----------IMPRLSSLTFDSCPKLKAL-PDHFHQT-TTLKEFNIGWN 901 (930)
Q Consensus 847 ~~~~~~f~~L~~L~l~~~-----------~lp~L~~L~l~~c~~L~~l-p~~l~~l-~~L~~L~l~~n 901 (930)
.+++|++|.+++| .+++|+.|++++| .+..+ |..+.++ ++|+.|++++|
T Consensus 516 -----~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 516 -----SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp -----TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred -----CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 6889999999988 4789999999999 45554 5667777 68999999987
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=4.7e-20 Score=208.81 Aligned_cols=44 Identities=30% Similarity=0.514 Sum_probs=34.3
Q ss_pred ccccceeeccc-------cccccceeeeccCCccCCCCCCCCCCCCccEEEEecC
Q 002362 854 PKLKSLTISWI-------IMPRLSSLTFDSCPKLKALPDHFHQTTTLKEFNIGWN 901 (930)
Q Consensus 854 ~~L~~L~l~~~-------~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~n 901 (930)
++|+.|.++++ .+++|+.|++++| .++.+|. .+++|++|++++|
T Consensus 317 ~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 317 PSLEELNVSNNKLIELPALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS
T ss_pred CcCCEEECCCCccccccccCCcCCEEECCCC-ccccccc---hhhhccEEECCCC
Confidence 47888888777 3578888888887 6777886 3688899999886
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=7.5e-20 Score=199.19 Aligned_cols=262 Identities=17% Similarity=0.086 Sum_probs=190.1
Q ss_pred eeEEEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCccc-Ccccc
Q 002362 531 VRHLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRI-PRNIE 609 (930)
Q Consensus 531 ~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~ 609 (930)
.+.+.+.......+|..+ .++++.|.+.++.+... .+..|.++++|++|+|++|. +..+ |..++
T Consensus 33 l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~~------~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~ 97 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEI------KDGDFKNLKNLHTLILINNK-------ISKISPGAFA 97 (330)
T ss_dssp TTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCB------CTTTTTTCTTCCEEECCSSC-------CCCBCTTTTT
T ss_pred CeEEEecCCCccccCccC--CCCCeEEECCCCcCCEe------ChhhhccCCCCCEEECCCCc-------CCeeCHHHhc
Confidence 444554444555545433 36889999998865432 23347889999999999653 4444 78899
Q ss_pred cCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccc--cccCCcCCCCCCCCc
Q 002362 610 RLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISL--RYMPVGIGRLTSLRT 687 (930)
Q Consensus 610 ~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~--~~~p~~i~~l~~L~~ 687 (930)
++++|++|++++|.++.+|..+. ++|++|++++|......+..+..+++|++|++++|... ...|..++.+++|+.
T Consensus 98 ~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 98 PLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp TCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred CCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 99999999999999999988765 79999999999843334445789999999999988542 245667888999999
Q ss_pred CCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchH
Q 002362 688 LDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQ 767 (930)
Q Consensus 688 L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 767 (930)
|++..+.... ++..+ .++|+.|++.++......+. .+..+++|+.|++++|.+...
T Consensus 176 L~l~~n~l~~-----l~~~~--~~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~Ls~n~l~~~---------- 231 (330)
T 1xku_A 176 IRIADTNITT-----IPQGL--PPSLTELHLDGNKITKVDAA-------SLKGLNNLAKLGLSFNSISAV---------- 231 (330)
T ss_dssp EECCSSCCCS-----CCSSC--CTTCSEEECTTSCCCEECTG-------GGTTCTTCCEEECCSSCCCEE----------
T ss_pred EECCCCcccc-----CCccc--cccCCEEECCCCcCCccCHH-------HhcCCCCCCEEECCCCcCcee----------
Confidence 8876654432 12222 25677776666654332222 577889999999999987652
Q ss_pred HHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCC-CC------CCCCcceeeeccCc
Q 002362 768 LLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP-LG------KLPSLEKLSISFMC 835 (930)
Q Consensus 768 ~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~------~l~~L~~L~L~~~~ 835 (930)
....+..+++|++|++++|.+.. +|.++..+++|+.|+|++|.+....+. +. ..++|+.|++.+++
T Consensus 232 -~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 232 -DNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp -CTTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred -ChhhccCCCCCCEEECCCCcCcc-CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence 22346678999999999999987 999999999999999999987653322 32 35788999998765
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=198.75 Aligned_cols=249 Identities=18% Similarity=0.219 Sum_probs=150.5
Q ss_pred CcceEEEcCCcccccCCCCCcccCc-ccccCCCCCeeeccCCcccccc-cccccCCcccEEeccCCCCCcccccc-cccc
Q 002362 582 TSLRVLEFGDWARSLQLGPLTRIPR-NIERLVHLRYLNLSNQSIRKLP-DTLCELYNLQKLDISCCCKLKELPQG-IGKL 658 (930)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L 658 (930)
+.|++|++++| .+..+|. .++++++|++|++++|.++.++ ..+.++++|++|++++|. +..+|.. +..+
T Consensus 52 ~~L~~L~l~~n-------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l 123 (353)
T 2z80_A 52 EAVKSLDLSNN-------RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPL 123 (353)
T ss_dssp TTCCEEECTTS-------CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTC
T ss_pred ccCcEEECCCC-------cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCC
Confidence 35666666633 3344443 5666666666666666666553 346666666666666665 4455544 5666
Q ss_pred CCcceEeecCcccccccCC--cCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhc
Q 002362 659 INMRHLLNYGTISLRYMPV--GIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRL 736 (930)
Q Consensus 659 ~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~ 736 (930)
++|++|++++| .+..+|. .++.+++|++|++. ++.....++. .
T Consensus 124 ~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~----------------------------~n~~~~~~~~------~ 168 (353)
T 2z80_A 124 SSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVG----------------------------NMDTFTKIQR------K 168 (353)
T ss_dssp TTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEE----------------------------ESSSCCEECT------T
T ss_pred ccCCEEECCCC-CCcccCchhhhccCCCCcEEECC----------------------------CCccccccCH------H
Confidence 66666666665 3344443 34445555555443 3321111111 1
Q ss_pred cccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccc-cccCccEEEeeCCCCCC
Q 002362 737 ELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMM-SLTNLRSLDLDDCENCE 815 (930)
Q Consensus 737 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~ 815 (930)
.+..+++|+.|++++|.+.+. .+..+..+++|++|++++|.+.. +|..+. .+++|+.|+|++|.+..
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~-----------~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSY-----------EPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEE-----------CTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEEESCBCTT
T ss_pred HccCCCCCCEEECCCCCcCcc-----------CHHHHhccccCCeecCCCCcccc-chhhhhhhcccccEEECCCCcccc
Confidence 355677888888888877642 34567778889999998888766 665443 58889999999887665
Q ss_pred CCC----CCCCCCCcceeeeccCcCceEeCCccccCcccccCccccceeeccccccccceeeeccCCccCCCCCCC-CCC
Q 002362 816 KLP----PLGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWIIMPRLSSLTFDSCPKLKALPDHF-HQT 890 (930)
Q Consensus 816 ~l~----~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~lp~L~~L~l~~c~~L~~lp~~l-~~l 890 (930)
..+ .....+.++.+++.++. +.+.... .+|. .-..+++|+.|++++| .++.+|..+ ..+
T Consensus 237 ~~~~~l~~~~~~~~l~~l~L~~~~--------l~~~~l~-~l~~------~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l 300 (353)
T 2z80_A 237 FHFSELSTGETNSLIKKFTFRNVK--------ITDESLF-QVMK------LLNQISGLLELEFSRN-QLKSVPDGIFDRL 300 (353)
T ss_dssp CCCC------CCCCCCEEEEESCB--------CCHHHHH-HHHH------HHHTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred ccccccccccccchhhcccccccc--------ccCcchh-hhHH------HHhcccCCCEEECCCC-CCCccCHHHHhcC
Confidence 322 23345667777776432 1110000 0010 0003789999999998 688999875 889
Q ss_pred CCccEEEEecC
Q 002362 891 TTLKEFNIGWN 901 (930)
Q Consensus 891 ~~L~~L~l~~n 901 (930)
++|++|++++|
T Consensus 301 ~~L~~L~L~~N 311 (353)
T 2z80_A 301 TSLQKIWLHTN 311 (353)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEEeeCC
Confidence 99999999987
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=1.8e-18 Score=201.72 Aligned_cols=237 Identities=21% Similarity=0.195 Sum_probs=122.4
Q ss_pred CcccCcccccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCC
Q 002362 601 LTRIPRNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIG 680 (930)
Q Consensus 601 ~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 680 (930)
+..+|..+. ++|++|+|++|.|+.+|. .+++|++|++++|. +..+|. .+++|++|++++| .+..+|.
T Consensus 52 L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N-~l~~l~~--- 118 (622)
T 3g06_A 52 LTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFSN-PLTHLPA--- 118 (622)
T ss_dssp CSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECSC-CCCCCCC---
T ss_pred cCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcCC-cCCCCCC---
Confidence 344444443 455555555555555554 34555555555554 444444 4455555555554 3333443
Q ss_pred CCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcC
Q 002362 681 RLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQR 760 (930)
Q Consensus 681 ~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~ 760 (930)
.+++|++|++..+.... ++. .+++|+.|++.++... .++. ...+|+.|++++|.++.
T Consensus 119 ~l~~L~~L~L~~N~l~~-----lp~---~l~~L~~L~Ls~N~l~-~l~~----------~~~~L~~L~L~~N~l~~---- 175 (622)
T 3g06_A 119 LPSGLCKLWIFGNQLTS-----LPV---LPPGLQELSVSDNQLA-SLPA----------LPSELCKLWAYNNQLTS---- 175 (622)
T ss_dssp CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCS-CCCC----------CCTTCCEEECCSSCCSC----
T ss_pred CCCCcCEEECCCCCCCc-----CCC---CCCCCCEEECcCCcCC-CcCC----------ccCCCCEEECCCCCCCC----
Confidence 33444444443332211 111 1234444444333221 1111 12345555555555443
Q ss_pred CCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCCCCCCCCcceeeeccCcCceEe
Q 002362 761 RKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPPLGKLPSLEKLSISFMCSVKRV 840 (930)
Q Consensus 761 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~ 840 (930)
++ ..+++|+.|++++|.+.+ +|.. +++|+.|++++|.+. .+|. .+++|+.|+|++|. ++.+
T Consensus 176 --------l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~--~~~~L~~L~Ls~N~-L~~l 236 (622)
T 3g06_A 176 --------LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA--LPSGLKELIVSGNR-LTSL 236 (622)
T ss_dssp --------CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC--CCTTCCEEECCSSC-CSCC
T ss_pred --------Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC--CCCCCCEEEccCCc-cCcC
Confidence 11 234556666666655554 4442 245555666555433 2332 13555666665432 2111
Q ss_pred CCccccCcccccCccccceeeccc-------cccccceeeeccCCccCCCCCCCCCCCCccEEEEecCc
Q 002362 841 DNEILGIEITIAFPKLKSLTISWI-------IMPRLSSLTFDSCPKLKALPDHFHQTTTLKEFNIGWNC 902 (930)
Q Consensus 841 ~~~~~~~~~~~~f~~L~~L~l~~~-------~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~nc 902 (930)
+ ..+++|+.|.+++| .+++|+.|++++| .++.+|..+.++++|+.|++++|.
T Consensus 237 p---------~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 237 P---------VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp C---------CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred C---------CCCCcCcEEECCCCCCCcCCcccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 1 13455555555555 3678999999998 788999999999999999999963
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=3.7e-19 Score=191.48 Aligned_cols=227 Identities=19% Similarity=0.112 Sum_probs=144.5
Q ss_pred CCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccccccccc
Q 002362 552 KRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPDTL 631 (930)
Q Consensus 552 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i 631 (930)
+++++|.+.++.+.. .+...|.++++|++|+|++|... .+...|..+..+++|++|+|++|.+..+|..+
T Consensus 28 ~~l~~L~L~~n~l~~------i~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~ 97 (306)
T 2z66_A 28 SSATRLELESNKLQS------LPHGVFDKLTQLTKLSLSSNGLS----FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 97 (306)
T ss_dssp TTCCEEECCSSCCCC------CCTTTTTTCTTCSEEECCSSCCC----EEEEEEHHHHSCSCCCEEECCSCSEEEEEEEE
T ss_pred CCCCEEECCCCccCc------cCHhHhhccccCCEEECCCCccC----cccCcccccccccccCEEECCCCccccChhhc
Confidence 567777777665322 12334566777777777754322 22223555666777777777777777777777
Q ss_pred ccCCcccEEeccCCCCCccccc--cccccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCccccccc
Q 002362 632 CELYNLQKLDISCCCKLKELPQ--GIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLES 709 (930)
Q Consensus 632 ~~L~~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~ 709 (930)
..+++|++|++++|. +..+|. .+..+++|++|++++|......|..++.+++|++|++.
T Consensus 98 ~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~------------------ 158 (306)
T 2z66_A 98 LGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA------------------ 158 (306)
T ss_dssp ETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT------------------
T ss_pred CCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC------------------
Confidence 777777777777776 555443 56677777777777764433444445555555555532
Q ss_pred ccCCCcCCeeeeeccc-CCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeecc
Q 002362 710 LRSLELLQVCGIRRLG-NVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYR 788 (930)
Q Consensus 710 L~~L~~L~~~~~~~~~-~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 788 (930)
++...+ ..+. .+..+++|+.|++++|.+... .+..+..+++|++|++++|.
T Consensus 159 ----------~n~l~~~~~~~-------~~~~l~~L~~L~Ls~n~l~~~-----------~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 159 ----------GNSFQENFLPD-------IFTELRNLTFLDLSQCQLEQL-----------SPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp ----------TCEEGGGEECS-------CCTTCTTCCEEECTTSCCCEE-----------CTTTTTTCTTCCEEECTTSC
T ss_pred ----------CCccccccchh-------HHhhCcCCCEEECCCCCcCCc-----------CHHHhcCCCCCCEEECCCCc
Confidence 222111 1111 355667788888887776542 24456677888888888888
Q ss_pred CCCCCCcccccccCccEEEeeCCCCCCCCCC-CCCCC-CcceeeeccCc
Q 002362 789 GKTVFPPWMMSLTNLRSLDLDDCENCEKLPP-LGKLP-SLEKLSISFMC 835 (930)
Q Consensus 789 ~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~-~L~~L~L~~~~ 835 (930)
+.+..+..+..+++|+.|+|++|.+.+..|. +..+| +|+.|+|++|+
T Consensus 211 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 8773344677888888888888877765554 77774 88888888654
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=1.3e-18 Score=187.22 Aligned_cols=234 Identities=20% Similarity=0.188 Sum_probs=125.5
Q ss_pred CCcccCcccccCCCCCeeeccCCcccccccc-cccCCcccEEeccCCCCCccc---cccccccCCcceEeecCccccccc
Q 002362 600 PLTRIPRNIERLVHLRYLNLSNQSIRKLPDT-LCELYNLQKLDISCCCKLKEL---PQGIGKLINMRHLLNYGTISLRYM 675 (930)
Q Consensus 600 ~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~l---p~~i~~L~~L~~L~l~~~~~~~~~ 675 (930)
.+..+|..+. .+|++|+|++|.++.+|.. +.++++|++|++++|. +..+ |..+..+++|++|++++| .+..+
T Consensus 18 ~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l 93 (306)
T 2z66_A 18 GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITM 93 (306)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-SEEEE
T ss_pred CcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-ccccC
Confidence 3444554332 3555566665555555543 3555556666665554 3222 344455555666665555 33444
Q ss_pred CCcCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCC
Q 002362 676 PVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEE 755 (930)
Q Consensus 676 p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 755 (930)
|..+..+++|++|++..+.... ... ...+..+++|+.|++++|.+.
T Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~----------------------------~~~------~~~~~~l~~L~~L~l~~n~l~ 139 (306)
T 2z66_A 94 SSNFLGLEQLEHLDFQHSNLKQ----------------------------MSE------FSVFLSLRNLIYLDISHTHTR 139 (306)
T ss_dssp EEEEETCTTCCEEECTTSEEES----------------------------STT------TTTTTTCTTCCEEECTTSCCE
T ss_pred hhhcCCCCCCCEEECCCCcccc----------------------------ccc------chhhhhccCCCEEECCCCcCC
Confidence 4445555555555432111000 000 002334455555665555443
Q ss_pred CCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCC-CCCcccccccCccEEEeeCCCCCCCCCC-CCCCCCcceeeecc
Q 002362 756 GDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKT-VFPPWMMSLTNLRSLDLDDCENCEKLPP-LGKLPSLEKLSISF 833 (930)
Q Consensus 756 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~ 833 (930)
.. .+..+..+++|++|++++|.+.+ .+|.++..+++|+.|+|++|.+.+..|. ++.+++|+.|+|++
T Consensus 140 ~~-----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 208 (306)
T 2z66_A 140 VA-----------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208 (306)
T ss_dssp EC-----------STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred cc-----------chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC
Confidence 21 23344556677777777776553 3566777777777777777766655443 77777777777775
Q ss_pred CcCceEeCCccccCcccccCccccceeeccccccccceeeeccCCccCCCCCCCCCCC-CccEEEEecC
Q 002362 834 MCSVKRVDNEILGIEITIAFPKLKSLTISWIIMPRLSSLTFDSCPKLKALPDHFHQTT-TLKEFNIGWN 901 (930)
Q Consensus 834 ~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~-~L~~L~l~~n 901 (930)
|. ++.++.. .|. .+++|+.|++++|......|..+..++ +|++|++++|
T Consensus 209 N~-l~~~~~~--------~~~----------~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 209 NN-FFSLDTF--------PYK----------CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp SC-CSBCCSG--------GGT----------TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred Cc-cCccChh--------hcc----------CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 43 1111110 111 256777777777754444556666664 7888888876
No 56
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=3.7e-18 Score=204.07 Aligned_cols=139 Identities=24% Similarity=0.220 Sum_probs=111.7
Q ss_pred CccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccC-cccccCCCCCeeec
Q 002362 541 GASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIP-RNIERLVHLRYLNL 619 (930)
Q Consensus 541 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L 619 (930)
...+|..+ -++++.|++++|.+... .+..|.++++|++|+|++| .+..+| ..|++|++|++|+|
T Consensus 43 l~~vP~~l--p~~~~~LdLs~N~i~~l------~~~~f~~l~~L~~L~Ls~N-------~i~~i~~~~f~~L~~L~~L~L 107 (635)
T 4g8a_A 43 FYKIPDNL--PFSTKNLDLSFNPLRHL------GSYSFFSFPELQVLDLSRC-------EIQTIEDGAYQSLSHLSTLIL 107 (635)
T ss_dssp CSSCCSSS--CTTCCEEECTTSCCCEE------CTTTTTTCTTCCEEECTTC-------CCCEECTTTTTTCTTCCEEEC
T ss_pred cCccCCCC--CcCCCEEEeeCCCCCCC------CHHHHhCCCCCCEEECCCC-------cCCCcChhHhcCCCCCCEEEc
Confidence 34455443 25799999999975433 3455899999999999955 466665 46899999999999
Q ss_pred cCCccccccc-ccccCCcccEEeccCCCCCccccc-cccccCCcceEeecCccccc-ccCCcCCCCCCCCcCCceEeCC
Q 002362 620 SNQSIRKLPD-TLCELYNLQKLDISCCCKLKELPQ-GIGKLINMRHLLNYGTISLR-YMPVGIGRLTSLRTLDEFYVSG 695 (930)
Q Consensus 620 ~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~~ 695 (930)
++|.|+.+|. .|.+|++|++|++++|. +..+|. .|+++++|++|++++|.... ..|..++.+++|++|++..+..
T Consensus 108 s~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 108 TGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp TTCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred cCCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 9999999986 57999999999999998 667765 58999999999999985322 4677889999999999876544
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=1.2e-19 Score=195.96 Aligned_cols=224 Identities=15% Similarity=0.065 Sum_probs=154.8
Q ss_pred hHHHHHhhcCCcceEEEcCCcccccCCCCCccc-CcccccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCcc
Q 002362 572 KILERLFRESTSLRVLEFGDWARSLQLGPLTRI-PRNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKE 650 (930)
Q Consensus 572 ~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~ 650 (930)
..+...+..+++|+.|+|++|. +..+ |..++++++|++|+|++|.++.++. +..+++|++|++++|. +..
T Consensus 24 ~~~~~~~~~~~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~ 94 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLSGNP-------LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQE 94 (317)
T ss_dssp HHHHHHHTTGGGCSEEECTTSC-------CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEE
T ss_pred hhHHHHhccCCCCCEEECcCCc-------cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccc
Confidence 3455566777788888888553 3334 3677888888888888888876665 7888888888888887 555
Q ss_pred ccccccccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCCh
Q 002362 651 LPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDV 730 (930)
Q Consensus 651 lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~ 730 (930)
+| .+++|++|++++|. +..++. ..+++|++|++..+.... ..+..+..+++|+.|++.++......+.
T Consensus 95 l~----~~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~- 162 (317)
T 3o53_A 95 LL----VGPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITM----LRDLDEGCRSRVQYLDLKLNEIDTVNFA- 162 (317)
T ss_dssp EE----ECTTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCS----GGGBCTGGGSSEEEEECTTSCCCEEEGG-
T ss_pred cc----CCCCcCEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCC----ccchhhhccCCCCEEECCCCCCCcccHH-
Confidence 55 34788888888873 444443 235677777766554332 2233556667777776666544322111
Q ss_pred hhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeC
Q 002362 731 GEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDD 810 (930)
Q Consensus 731 ~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~ 810 (930)
.....+++|+.|++++|.+.. + .....+++|+.|++++|.+.+ +|..+..+++|+.|+|++
T Consensus 163 -----~~~~~l~~L~~L~L~~N~l~~------------~-~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~ 223 (317)
T 3o53_A 163 -----ELAASSDTLEHLNLQYNFIYD------------V-KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRN 223 (317)
T ss_dssp -----GGGGGTTTCCEEECTTSCCCE------------E-ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTT
T ss_pred -----HHhhccCcCCEEECCCCcCcc------------c-ccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcC
Confidence 012356889999999888764 2 233357889999999998887 777788889999999999
Q ss_pred CCCCCCCCCCCCCCCcceeeeccCc
Q 002362 811 CENCEKLPPLGKLPSLEKLSISFMC 835 (930)
Q Consensus 811 ~~~~~~l~~l~~l~~L~~L~L~~~~ 835 (930)
|.+....+.+..+++|+.|++++|+
T Consensus 224 N~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 224 NKLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp SCCCEECTTCCCCTTCCEEECTTCC
T ss_pred CcccchhhHhhcCCCCCEEEccCCC
Confidence 9776543348888999999998664
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=3.7e-18 Score=194.35 Aligned_cols=221 Identities=20% Similarity=0.188 Sum_probs=141.4
Q ss_pred CcceEEEcCCcccccCCCCCccc-CcccccCCCCCeeeccCCcccccc-cccccCCcccEEeccCCCCCcccccc-cccc
Q 002362 582 TSLRVLEFGDWARSLQLGPLTRI-PRNIERLVHLRYLNLSNQSIRKLP-DTLCELYNLQKLDISCCCKLKELPQG-IGKL 658 (930)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L 658 (930)
++|++|+|++|. +..+ |..++++++|++|+|++|.|+.++ ..+.++++|++|+|++|. +..+|.. +..+
T Consensus 75 ~~l~~L~L~~n~-------i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 146 (452)
T 3zyi_A 75 SNTRYLNLMENN-------IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYL 146 (452)
T ss_dssp TTCSEEECCSSC-------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSC
T ss_pred CCccEEECcCCc-------CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhccc
Confidence 578999999653 4444 567888999999999999988775 578889999999999988 6666654 7889
Q ss_pred CCcceEeecCcccccccCC-cCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhcc
Q 002362 659 INMRHLLNYGTISLRYMPV-GIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLE 737 (930)
Q Consensus 659 ~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~ 737 (930)
++|++|++++|. +..+|. .+.++++|+.|++..+.....+ ....+..+++|+.|++.++.... ++ .
T Consensus 147 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i---~~~~~~~l~~L~~L~L~~n~l~~-~~--------~ 213 (452)
T 3zyi_A 147 SKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYI---SEGAFEGLFNLKYLNLGMCNIKD-MP--------N 213 (452)
T ss_dssp TTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEE---CTTTTTTCTTCCEEECTTSCCSS-CC--------C
T ss_pred CCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCcccc---ChhhccCCCCCCEEECCCCcccc-cc--------c
Confidence 999999998884 455554 5778888888876543322211 12234455555555554443321 12 2
Q ss_pred ccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCC
Q 002362 738 LDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKL 817 (930)
Q Consensus 738 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l 817 (930)
+..+++|+.|+|++|.+... .+..+..+++|+.|++++|.+....|..+..+++|+.|+|++|.+....
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEI-----------RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEE-----------CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ccccccccEEECcCCcCccc-----------CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 44556666666666655432 2344555666666666666665544555666666666666666554332
Q ss_pred CC-CCCCCCcceeeeccC
Q 002362 818 PP-LGKLPSLEKLSISFM 834 (930)
Q Consensus 818 ~~-l~~l~~L~~L~L~~~ 834 (930)
+. +..+++|+.|+|++|
T Consensus 283 ~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp TTSSTTCTTCCEEECCSS
T ss_pred hHHhccccCCCEEEccCC
Confidence 22 556666666666654
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=6.8e-18 Score=191.40 Aligned_cols=222 Identities=21% Similarity=0.206 Sum_probs=145.2
Q ss_pred CcceEEEcCCcccccCCCCCccc-CcccccCCCCCeeeccCCcccccc-cccccCCcccEEeccCCCCCccccc-ccccc
Q 002362 582 TSLRVLEFGDWARSLQLGPLTRI-PRNIERLVHLRYLNLSNQSIRKLP-DTLCELYNLQKLDISCCCKLKELPQ-GIGKL 658 (930)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L 658 (930)
+.+++|+|++| .+..+ +..+.++++|++|+|++|.|+.++ ..+.++++|++|+|++|. +..+|. .+..+
T Consensus 64 ~~l~~L~L~~n-------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 135 (440)
T 3zyj_A 64 TNTRLLNLHEN-------QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYL 135 (440)
T ss_dssp TTCSEEECCSC-------CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSC
T ss_pred CCCcEEEccCC-------cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhcc
Confidence 57899999955 34444 367888999999999999988775 568889999999999987 666665 57889
Q ss_pred CCcceEeecCcccccccC-CcCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhcc
Q 002362 659 INMRHLLNYGTISLRYMP-VGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLE 737 (930)
Q Consensus 659 ~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~ 737 (930)
++|++|++++|. +..+| ..+..+++|++|++..+.....+ ....+..+++|+.|++.++... .++ .
T Consensus 136 ~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i---~~~~~~~l~~L~~L~L~~n~l~-~~~--------~ 202 (440)
T 3zyj_A 136 SKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYI---SEGAFEGLSNLRYLNLAMCNLR-EIP--------N 202 (440)
T ss_dssp SSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEE---CTTTTTTCSSCCEEECTTSCCS-SCC--------C
T ss_pred ccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCccee---CcchhhcccccCeecCCCCcCc-ccc--------c
Confidence 999999998884 44554 46788888888876543322211 1223455556665555554332 222 2
Q ss_pred ccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCC
Q 002362 738 LDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKL 817 (930)
Q Consensus 738 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l 817 (930)
+..+++|+.|+|++|.+... .+..+..+++|+.|++++|.+....|.++..+++|+.|+|++|.+....
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAI-----------RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEE-----------CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred cCCCcccCEEECCCCccCcc-----------ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 45566667777766665532 2344556666777777766666644555666667777777766555433
Q ss_pred CC-CCCCCCcceeeeccCc
Q 002362 818 PP-LGKLPSLEKLSISFMC 835 (930)
Q Consensus 818 ~~-l~~l~~L~~L~L~~~~ 835 (930)
+. +..+++|+.|+|++|+
T Consensus 272 ~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTTTSSCTTCCEEECCSSC
T ss_pred hhHhccccCCCEEEcCCCC
Confidence 32 5666667777666543
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=4.7e-18 Score=193.45 Aligned_cols=241 Identities=16% Similarity=0.129 Sum_probs=174.9
Q ss_pred EEEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCccc-CcccccC
Q 002362 533 HLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRI-PRNIERL 611 (930)
Q Consensus 533 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~L 611 (930)
.+......+..+|..+ .++++.|++.++.+... .+..|.++++|++|+|++|. +..+ |..+.++
T Consensus 58 ~v~c~~~~l~~iP~~~--~~~l~~L~L~~n~i~~~------~~~~~~~l~~L~~L~Ls~n~-------i~~~~~~~~~~l 122 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMI------QADTFRHLHHLEVLQLGRNS-------IRQIEVGAFNGL 122 (452)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEE------CTTTTTTCTTCCEEECCSSC-------CCEECTTTTTTC
T ss_pred EEEECCCCcCccCCCC--CCCccEEECcCCcCceE------CHHHcCCCCCCCEEECCCCc-------cCCcChhhccCc
Confidence 3333334444445433 36788888888865332 23447888889999998653 3444 4678888
Q ss_pred CCCCeeeccCCcccccccc-cccCCcccEEeccCCCCCccccc-cccccCCcceEeecCcccccccCC-cCCCCCCCCcC
Q 002362 612 VHLRYLNLSNQSIRKLPDT-LCELYNLQKLDISCCCKLKELPQ-GIGKLINMRHLLNYGTISLRYMPV-GIGRLTSLRTL 688 (930)
Q Consensus 612 ~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L 688 (930)
.+|++|+|++|.++.+|.. +..+++|++|++++|. +..+|. .+..+++|++|++++|..+..+|. .++.+++|+.|
T Consensus 123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 8999999999988888765 7788899999999888 555554 678888999999988777777775 47788888888
Q ss_pred CceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHH
Q 002362 689 DEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQL 768 (930)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~ 768 (930)
++..+.... ...+..+++|+.|++.++...+..+. .+..+++|+.|++++|.+...
T Consensus 202 ~L~~n~l~~------~~~~~~l~~L~~L~Ls~N~l~~~~~~-------~~~~l~~L~~L~L~~n~l~~~----------- 257 (452)
T 3zyi_A 202 NLGMCNIKD------MPNLTPLVGLEELEMSGNHFPEIRPG-------SFHGLSSLKKLWVMNSQVSLI----------- 257 (452)
T ss_dssp ECTTSCCSS------CCCCTTCTTCCEEECTTSCCSEECGG-------GGTTCTTCCEEECTTSCCCEE-----------
T ss_pred ECCCCcccc------cccccccccccEEECcCCcCcccCcc-------cccCccCCCEEEeCCCcCceE-----------
Confidence 876654433 23466667777777766655433332 577889999999999987652
Q ss_pred HhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCC
Q 002362 769 LLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCEN 813 (930)
Q Consensus 769 ~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~ 813 (930)
.+..+..+++|+.|+|++|.+....+..+..+++|+.|+|++|+.
T Consensus 258 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 258 ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 245577889999999999999884445667899999999999874
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=5.6e-18 Score=192.12 Aligned_cols=241 Identities=15% Similarity=0.164 Sum_probs=168.3
Q ss_pred EEEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccC-cccccC
Q 002362 533 HLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIP-RNIERL 611 (930)
Q Consensus 533 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~L 611 (930)
.+......+..+|..+ .++++.|.+.++.+... .+..|.++++|++|+|++|. +..++ ..+.++
T Consensus 47 ~v~c~~~~l~~iP~~~--~~~l~~L~L~~n~i~~~------~~~~~~~l~~L~~L~Ls~n~-------i~~i~~~~~~~l 111 (440)
T 3zyj_A 47 KVICVRKNLREVPDGI--STNTRLLNLHENQIQII------KVNSFKHLRHLEILQLSRNH-------IRTIEIGAFNGL 111 (440)
T ss_dssp EEECCSCCCSSCCSCC--CTTCSEEECCSCCCCEE------CTTTTSSCSSCCEEECCSSC-------CCEECGGGGTTC
T ss_pred EEEeCCCCcCcCCCCC--CCCCcEEEccCCcCCee------CHHHhhCCCCCCEEECCCCc-------CCccChhhccCC
Confidence 3333344444545433 26778888887764322 23347778888888888543 34443 567788
Q ss_pred CCCCeeeccCCccccccc-ccccCCcccEEeccCCCCCccccc-cccccCCcceEeecCcccccccCC-cCCCCCCCCcC
Q 002362 612 VHLRYLNLSNQSIRKLPD-TLCELYNLQKLDISCCCKLKELPQ-GIGKLINMRHLLNYGTISLRYMPV-GIGRLTSLRTL 688 (930)
Q Consensus 612 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L 688 (930)
++|++|+|++|.++.+|. .+..+++|++|++++|. +..+|. .+..+++|++|++++|..+..+|. .+..+++|++|
T Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 888888888888887765 47788888888888887 555544 577888888888887666666665 47778888888
Q ss_pred CceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHH
Q 002362 689 DEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQL 768 (930)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~ 768 (930)
++..+.... ...+..+++|+.|++.++......+. .+..+++|+.|+|++|.+...
T Consensus 191 ~L~~n~l~~------~~~~~~l~~L~~L~Ls~N~l~~~~~~-------~~~~l~~L~~L~L~~n~l~~~----------- 246 (440)
T 3zyj_A 191 NLAMCNLRE------IPNLTPLIKLDELDLSGNHLSAIRPG-------SFQGLMHLQKLWMIQSQIQVI----------- 246 (440)
T ss_dssp ECTTSCCSS------CCCCTTCSSCCEEECTTSCCCEECTT-------TTTTCTTCCEEECTTCCCCEE-----------
T ss_pred cCCCCcCcc------ccccCCCcccCEEECCCCccCccChh-------hhccCccCCEEECCCCceeEE-----------
Confidence 776554432 22356666777776666654433333 577888999999999887652
Q ss_pred HhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCC
Q 002362 769 LLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCEN 813 (930)
Q Consensus 769 ~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~ 813 (930)
.+..+..+++|+.|+|++|.+....+..+..+++|+.|+|++|++
T Consensus 247 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 247 ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 245677889999999999999884455667899999999999874
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=3.9e-18 Score=187.47 Aligned_cols=262 Identities=16% Similarity=0.139 Sum_probs=193.0
Q ss_pred ecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCccc-CcccccCCCCCe
Q 002362 538 VGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRI-PRNIERLVHLRY 616 (930)
Q Consensus 538 ~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~L~~Lr~ 616 (930)
.+.+..+|..+ .++|++|++.++.+... .+..+.++++|++|++++|. +..+ |..++++++|++
T Consensus 40 ~~~l~~iP~~~--~~~L~~L~l~~n~i~~~------~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 40 SGSLNSIPSGL--TEAVKSLDLSNNRITYI------SNSDLQRCVNLQALVLTSNG-------INTIEEDSFSSLGSLEH 104 (353)
T ss_dssp STTCSSCCTTC--CTTCCEEECTTSCCCEE------CTTTTTTCTTCCEEECTTSC-------CCEECTTTTTTCTTCCE
T ss_pred CCCcccccccc--cccCcEEECCCCcCccc------CHHHhccCCCCCEEECCCCc-------cCccCHhhcCCCCCCCE
Confidence 34455555544 35899999999975432 33458899999999999653 4444 567999999999
Q ss_pred eeccCCcccccccc-cccCCcccEEeccCCCCCccccc--cccccCCcceEeecCccccccc-CCcCCCCCCCCcCCceE
Q 002362 617 LNLSNQSIRKLPDT-LCELYNLQKLDISCCCKLKELPQ--GIGKLINMRHLLNYGTISLRYM-PVGIGRLTSLRTLDEFY 692 (930)
Q Consensus 617 L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~~~~ 692 (930)
|+|++|.++.+|.. ++++++|++|++++|. +..+|. .+..+++|++|++++|..+..+ |..++.+++|++|++..
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 99999999999876 8999999999999998 778887 6899999999999998555555 46789999999999887
Q ss_pred eCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhc
Q 002362 693 VSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEF 772 (930)
Q Consensus 693 ~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 772 (930)
+.... ..+..+..+++|+.|++.++.. . .... ..+..+++|+.|++++|.+.+.... ....
T Consensus 184 n~l~~----~~~~~l~~l~~L~~L~l~~n~l-~---~~~~---~~~~~~~~L~~L~L~~n~l~~~~~~--------~l~~ 244 (353)
T 2z80_A 184 SDLQS----YEPKSLKSIQNVSHLILHMKQH-I---LLLE---IFVDVTSSVECLELRDTDLDTFHFS--------ELST 244 (353)
T ss_dssp TTCCE----ECTTTTTTCSEEEEEEEECSCS-T---THHH---HHHHHTTTEEEEEEESCBCTTCCCC------------
T ss_pred CCcCc----cCHHHHhccccCCeecCCCCcc-c---cchh---hhhhhcccccEEECCCCcccccccc--------cccc
Confidence 65443 2245667777777777766653 1 1111 1234568899999999987753110 1112
Q ss_pred CCCCCCcceEEEeeccCCC----CCCcccccccCccEEEeeCCCCCCCCCC--CCCCCCcceeeeccCc
Q 002362 773 LQPPPNLRKLLIGSYRGKT----VFPPWMMSLTNLRSLDLDDCENCEKLPP--LGKLPSLEKLSISFMC 835 (930)
Q Consensus 773 l~~~~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~ 835 (930)
....+.++.+++.++.+.+ .+|.++..+++|+.|+|++|.+. .+|. ++.+++|+.|+|++|+
T Consensus 245 ~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp --CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 2345678888888776654 25778888999999999999776 4554 6889999999998654
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=2.5e-20 Score=213.44 Aligned_cols=349 Identities=17% Similarity=0.045 Sum_probs=213.7
Q ss_pred CcceeEEEEEecCCcccc--ccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccC
Q 002362 528 DEKVRHLLLIVGNGASFP--VSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIP 605 (930)
Q Consensus 528 ~~~~r~l~l~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp 605 (930)
+..++++.+..+.+.... ..+..+++|++|.+.++.+... ....++..+..+++|++|+|++|... ...+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~--~~~~l~~~l~~~~~L~~L~Ls~n~l~------~~~~ 73 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA--RCKDISSALRVNPALAELNLRSNELG------DVGV 73 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHH--HHHHHHHHHHTCTTCCEEECTTCCCH------HHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHH--HHHHHHHHHHhCCCcCEEeCCCCcCC------hHHH
Confidence 456778888777765322 2256778889999888864321 11234556778888999999865432 1112
Q ss_pred ccc-ccCC----CCCeeeccCCccc-----ccccccccCCcccEEeccCCCCCcccccccc-----ccCCcceEeecCcc
Q 002362 606 RNI-ERLV----HLRYLNLSNQSIR-----KLPDTLCELYNLQKLDISCCCKLKELPQGIG-----KLINMRHLLNYGTI 670 (930)
Q Consensus 606 ~~i-~~L~----~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~-----~L~~L~~L~l~~~~ 670 (930)
..+ ..+. +|++|+|++|.|+ .+|..+..+++|++|++++|......+..+. .+++|++|++++|.
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence 222 2344 6889999998877 4677888888999999998873323233332 24578899988884
Q ss_pred ccc----ccCCcCCCCCCCCcCCceEeCCCCCcCCCcccccc-----cccCCCcCCeeeeecccCCCChhhhhhccccCC
Q 002362 671 SLR----YMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLE-----SLRSLELLQVCGIRRLGNVTDVGEAKRLELDKM 741 (930)
Q Consensus 671 ~~~----~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~-----~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~ 741 (930)
... .++..++.+++|++|++..+.... .....+. .+++|+.|++.++.... .........+..+
T Consensus 154 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~----~~~~~l~~~l~~~~~~L~~L~L~~n~l~~---~~~~~l~~~l~~~ 226 (461)
T 1z7x_W 154 LSAASCEPLASVLRAKPDFKELTVSNNDINE----AGVRVLCQGLKDSPCQLEALKLESCGVTS---DNCRDLCGIVASK 226 (461)
T ss_dssp CBGGGHHHHHHHHHHCTTCCEEECCSSBCHH----HHHHHHHHHHHHSCCCCCEEECTTSCCBT---THHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhhCCCCCEEECcCCCcch----HHHHHHHHHHhcCCCCceEEEccCCCCcH---HHHHHHHHHHHhC
Confidence 332 235556677888888876544221 0011111 13466666665553321 1111223345677
Q ss_pred CCCCeeEEEeeCCCCCCcCCCccchHHHhh-cCCCCCCcceEEEeeccCCCC----CCcccccccCccEEEeeCCCCCCC
Q 002362 742 KNLSCLKLLFNKEEGDGQRRKNEDDQLLLE-FLQPPPNLRKLLIGSYRGKTV----FPPWMMSLTNLRSLDLDDCENCEK 816 (930)
Q Consensus 742 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~L~~~~~~~~ 816 (930)
++|+.|++++|.+... ....+.. ...++++|++|++++|.+... +|..+..+++|+.|+|++|.+.+.
T Consensus 227 ~~L~~L~Ls~n~l~~~-------~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 299 (461)
T 1z7x_W 227 ASLRELALGSNKLGDV-------GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299 (461)
T ss_dssp TTCCEEECCSSBCHHH-------HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred CCccEEeccCCcCChH-------HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence 8889999888865431 1111222 234578899999988876652 455666788899999988865432
Q ss_pred CC----C--CCCCCCcceeeeccCcCceEeCCccccCcccccCccccceeeccc----------------cccccceeee
Q 002362 817 LP----P--LGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWI----------------IMPRLSSLTF 874 (930)
Q Consensus 817 l~----~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~----------------~lp~L~~L~l 874 (930)
.+ . ....++|+.|++++|. ++..+..... .....+++|++|++++| ..++|+.|++
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 377 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFS-SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHH-HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHH-HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEEC
Confidence 11 1 1233688888888764 2111000000 00114578888888877 1568999999
Q ss_pred ccCCccC-----CCCCCCCCCCCccEEEEecC
Q 002362 875 DSCPKLK-----ALPDHFHQTTTLKEFNIGWN 901 (930)
Q Consensus 875 ~~c~~L~-----~lp~~l~~l~~L~~L~l~~n 901 (930)
++| .+. .+|..+..+++|++|++++|
T Consensus 378 ~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 378 ADC-DVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp TTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred CCC-CCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 988 455 56777777889999999885
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=6.4e-17 Score=188.67 Aligned_cols=254 Identities=19% Similarity=0.139 Sum_probs=167.7
Q ss_pred ceeEEEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccc
Q 002362 530 KVRHLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIE 609 (930)
Q Consensus 530 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~ 609 (930)
.++.+.+..+.+..+|..+. ++|++|.+.+|.+... + ..+++|++|+|++| .+..+|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~l------p----~~l~~L~~L~Ls~N-------~l~~lp~--- 98 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSL------P----ALPPELRTLEVSGN-------QLTSLPV--- 98 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCC------C----CCCTTCCEEEECSC-------CCSCCCC---
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCC------C----CcCCCCCEEEcCCC-------cCCcCCC---
Confidence 35667777777766665554 7888888888864321 1 14678888999854 4556665
Q ss_pred cCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCC
Q 002362 610 RLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLD 689 (930)
Q Consensus 610 ~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 689 (930)
.+++|++|+|++|.++.+|. .+.+|++|++++|. +..+|.. +++|++|++++| .+..+|.. +.+|+.|+
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~ 167 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPAL---PSELCKLW 167 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCCC---CTTCCEEE
T ss_pred CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCCc---cCCCCEEE
Confidence 67888899999888888887 57888888888887 7777764 478888888888 55666653 35666666
Q ss_pred ceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHH
Q 002362 690 EFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLL 769 (930)
Q Consensus 690 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 769 (930)
+.++.... ++ ..+++|+.|++.++.... ++. ..++|+.|++++|.+.. +
T Consensus 168 L~~N~l~~-----l~---~~~~~L~~L~Ls~N~l~~-l~~----------~~~~L~~L~L~~N~l~~------------l 216 (622)
T 3g06_A 168 AYNNQLTS-----LP---MLPSGLQELSVSDNQLAS-LPT----------LPSELYKLWAYNNRLTS------------L 216 (622)
T ss_dssp CCSSCCSC-----CC---CCCTTCCEEECCSSCCSC-CCC----------CCTTCCEEECCSSCCSS------------C
T ss_pred CCCCCCCC-----Cc---ccCCCCcEEECCCCCCCC-CCC----------ccchhhEEECcCCcccc------------c
Confidence 55443332 12 334566666666554322 222 23678888888887664 1
Q ss_pred hhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCCCCCCCCcceeeeccCcCceEeCCccccCcc
Q 002362 770 LEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPPLGKLPSLEKLSISFMCSVKRVDNEILGIEI 849 (930)
Q Consensus 770 ~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 849 (930)
+. .+++|+.|++++|.+.+ +| ..+++|+.|+|++|.+. .+|. .+++|+.|+|++|. ++.++..+.
T Consensus 217 ~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~--~~~~L~~L~Ls~N~-L~~lp~~l~---- 281 (622)
T 3g06_A 217 PA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM--LPSGLLSLSVYRNQ-LTRLPESLI---- 281 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSC-CCSCCGGGG----
T ss_pred CC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc--ccccCcEEeCCCCC-CCcCCHHHh----
Confidence 21 24778888888888877 77 34578888888888655 4555 66888888888663 333332221
Q ss_pred cccCccccceeeccc
Q 002362 850 TIAFPKLKSLTISWI 864 (930)
Q Consensus 850 ~~~f~~L~~L~l~~~ 864 (930)
.+++|+.|++++|
T Consensus 282 --~l~~L~~L~L~~N 294 (622)
T 3g06_A 282 --HLSSETTVNLEGN 294 (622)
T ss_dssp --GSCTTCEEECCSC
T ss_pred --hccccCEEEecCC
Confidence 3455555555555
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=5.9e-18 Score=179.96 Aligned_cols=62 Identities=23% Similarity=0.177 Sum_probs=32.8
Q ss_pred CCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCC-CCCCCCcceeeeccC
Q 002362 773 LQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP-LGKLPSLEKLSISFM 834 (930)
Q Consensus 773 l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~ 834 (930)
+..+++|++|++++|.+.+..|.++..+++|+.|+|++|.+.+..+. +..+++|+.|+|+++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 44455555555555555553355555555566666655554432222 555555666655544
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=7.9e-18 Score=192.53 Aligned_cols=76 Identities=22% Similarity=0.302 Sum_probs=49.9
Q ss_pred CCcceEEEcCCcccccCCCCCccc-CcccccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccC
Q 002362 581 STSLRVLEFGDWARSLQLGPLTRI-PRNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLI 659 (930)
Q Consensus 581 ~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~ 659 (930)
+++|++|+|++|. +..+ |..++.+++|++|+|++|.++.+++ ++.+++|++|++++|. +..+|. .+
T Consensus 33 ~~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~ 99 (487)
T 3oja_A 33 AWNVKELDLSGNP-------LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GP 99 (487)
T ss_dssp GGGCCEEECCSSC-------CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CT
T ss_pred CCCccEEEeeCCc-------CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CC
Confidence 3467777777543 3333 4567777777777777777765554 7777777777777776 555443 26
Q ss_pred CcceEeecCc
Q 002362 660 NMRHLLNYGT 669 (930)
Q Consensus 660 ~L~~L~l~~~ 669 (930)
+|++|++++|
T Consensus 100 ~L~~L~L~~N 109 (487)
T 3oja_A 100 SIETLHAANN 109 (487)
T ss_dssp TCCEEECCSS
T ss_pred CcCEEECcCC
Confidence 6777777666
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=2.8e-17 Score=174.72 Aligned_cols=85 Identities=19% Similarity=0.147 Sum_probs=39.6
Q ss_pred ccccCCCCCeeeccCCccccc-ccccccCCcccEEeccCCCCCccc-cccccccCCcceEeecCcccccccCCcCCCCCC
Q 002362 607 NIERLVHLRYLNLSNQSIRKL-PDTLCELYNLQKLDISCCCKLKEL-PQGIGKLINMRHLLNYGTISLRYMPVGIGRLTS 684 (930)
Q Consensus 607 ~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~ 684 (930)
.++++++|++|+|++|.++.+ |..+..+++|++|++++|..+..+ |..+..+++|++|++++|......|..++.+++
T Consensus 51 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 130 (285)
T 1ozn_A 51 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcC
Confidence 344555555555555555544 344555555555555555423333 344455555555555554322222333444444
Q ss_pred CCcCCce
Q 002362 685 LRTLDEF 691 (930)
Q Consensus 685 L~~L~~~ 691 (930)
|++|++.
T Consensus 131 L~~L~l~ 137 (285)
T 1ozn_A 131 LQYLYLQ 137 (285)
T ss_dssp CCEEECC
T ss_pred CCEEECC
Confidence 4444433
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=1.3e-17 Score=190.83 Aligned_cols=216 Identities=15% Similarity=0.064 Sum_probs=159.4
Q ss_pred CCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccccccc
Q 002362 550 GVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPD 629 (930)
Q Consensus 550 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~ 629 (930)
.+++|++|+++++.+... ++..|..+++|++|+|++|. +..++. ++.+++|++|+|++|.|+.+|.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~Ls~N~-------l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~ 97 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQI------SAADLAPFTKLELLNLSSNV-------LYETLD-LESLSTLRTLDLNNNYVQELLV 97 (487)
T ss_dssp TGGGCCEEECCSSCCCCC------CGGGGTTCTTCCEEECTTSC-------CEEEEE-CTTCTTCCEEECCSSEEEEEEE
T ss_pred cCCCccEEEeeCCcCCCC------CHHHHhCCCCCCEEEeeCCC-------CCCCcc-cccCCCCCEEEecCCcCCCCCC
Confidence 445899999999975432 34558899999999999654 444443 8999999999999999998875
Q ss_pred ccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCccccccc
Q 002362 630 TLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLES 709 (930)
Q Consensus 630 ~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~ 709 (930)
.++|++|++++|. +..+|. ..+++|++|++++|......|..++.+++|++|++..+....
T Consensus 98 ----~~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------------ 158 (487)
T 3oja_A 98 ----GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT------------ 158 (487)
T ss_dssp ----CTTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE------------
T ss_pred ----CCCcCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC------------
Confidence 3899999999998 555554 357899999999995544456677778888877754332211
Q ss_pred ccCCCcCCeeeeecccCCCChhhhhhccc-cCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeecc
Q 002362 710 LRSLELLQVCGIRRLGNVTDVGEAKRLEL-DKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYR 788 (930)
Q Consensus 710 L~~L~~L~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 788 (930)
..+. .+ ..+++|+.|+|++|.+++ + .....+++|+.|++++|.
T Consensus 159 ----------------~~~~-------~l~~~l~~L~~L~Ls~N~l~~------------~-~~~~~l~~L~~L~Ls~N~ 202 (487)
T 3oja_A 159 ----------------VNFA-------ELAASSDTLEHLNLQYNFIYD------------V-KGQVVFAKLKTLDLSSNK 202 (487)
T ss_dssp ----------------EEGG-------GGGGGTTTCCEEECTTSCCCE------------E-ECCCCCTTCCEEECCSSC
T ss_pred ----------------cChH-------HHhhhCCcccEEecCCCcccc------------c-cccccCCCCCEEECCCCC
Confidence 0011 12 245778888888887764 1 233457888899998888
Q ss_pred CCCCCCcccccccCccEEEeeCCCCCCCCCCCCCCCCcceeeeccCc
Q 002362 789 GKTVFPPWMMSLTNLRSLDLDDCENCEKLPPLGKLPSLEKLSISFMC 835 (930)
Q Consensus 789 ~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 835 (930)
+.+ +|..+..+++|+.|+|++|.+....+.++.+++|+.|++++|+
T Consensus 203 l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 203 LAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred CCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 887 7777888888999999988777544448888889998888664
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=2.4e-18 Score=185.30 Aligned_cols=248 Identities=19% Similarity=0.175 Sum_probs=151.3
Q ss_pred hcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccc--ccccccc-------cCCcccEEeccCCCCCc
Q 002362 579 RESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIR--KLPDTLC-------ELYNLQKLDISCCCKLK 649 (930)
Q Consensus 579 ~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~--~lp~~i~-------~L~~L~~L~l~~~~~~~ 649 (930)
...+.|+.|++++| .+ .+|..+... |++|+|++|.+. .+|..+. ++++|++|++++|....
T Consensus 40 ~~~~~L~~l~l~~n-------~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 109 (312)
T 1wwl_A 40 GGGRSLEYLLKRVD-------TE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG 109 (312)
T ss_dssp EEEEECTTHHHHCC-------TT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS
T ss_pred ccCCCceeEeeccc-------cc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc
Confidence 34445555555532 23 445544443 566666665554 2344443 45666666666665333
Q ss_pred cccccc--cccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCC
Q 002362 650 ELPQGI--GKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNV 727 (930)
Q Consensus 650 ~lp~~i--~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~ 727 (930)
.+|..+ ..+++|++|++++|. +...|..++.+.. ..+++|+.|++.++......
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~-----------------------~~~~~L~~L~L~~N~l~~~~ 165 (312)
T 1wwl_A 110 TAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQ-----------------------WLKPGLKVLSIAQAHSLNFS 165 (312)
T ss_dssp CCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHT-----------------------TCCTTCCEEEEESCSCCCCC
T ss_pred hhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHH-----------------------hhcCCCcEEEeeCCCCccch
Confidence 555554 556666666666552 2333443333300 00144444555444433322
Q ss_pred CChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcC--CCCCCcceEEEeeccCCCCCC---cc-ccccc
Q 002362 728 TDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFL--QPPPNLRKLLIGSYRGKTVFP---PW-MMSLT 801 (930)
Q Consensus 728 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~p---~~-~~~l~ 801 (930)
+. .+..+++|+.|++++|.+.+. ..++..+ ..+++|++|++++|.+.. +| .+ +..++
T Consensus 166 ~~-------~~~~l~~L~~L~Ls~N~l~~~---------~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 166 CE-------QVRVFPALSTLDLSDNPELGE---------RGLISALCPLKFPTLQVLALRNAGMET-PSGVCSALAAARV 228 (312)
T ss_dssp TT-------TCCCCSSCCEEECCSCTTCHH---------HHHHHHSCTTSCTTCCEEECTTSCCCC-HHHHHHHHHHTTC
T ss_pred HH-------HhccCCCCCEEECCCCCcCcc---------hHHHHHHHhccCCCCCEEECCCCcCcc-hHHHHHHHHhcCC
Confidence 22 466788899999998876431 1123333 778999999999998874 33 22 24678
Q ss_pred CccEEEeeCCCCCCCC--CCCCCCCCcceeeeccCcCceEeCCccccCcccccCccccceeeccccccccceeeeccCCc
Q 002362 802 NLRSLDLDDCENCEKL--PPLGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWIIMPRLSSLTFDSCPK 879 (930)
Q Consensus 802 ~L~~L~L~~~~~~~~l--~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~lp~L~~L~l~~c~~ 879 (930)
+|+.|+|++|.+.+.. +.+..+++|+.|+|++|. ++.++.. + .++|+.|++++| .
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~---------~------------~~~L~~L~Ls~N-~ 285 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKG---------L------------PAKLSVLDLSYN-R 285 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSS---------C------------CSEEEEEECCSS-C
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhh---------c------------cCCceEEECCCC-C
Confidence 9999999999887755 347778999999999764 2211110 0 257889999988 6
Q ss_pred cCCCCCCCCCCCCccEEEEecC
Q 002362 880 LKALPDHFHQTTTLKEFNIGWN 901 (930)
Q Consensus 880 L~~lp~~l~~l~~L~~L~l~~n 901 (930)
++.+|. +..+++|++|++++|
T Consensus 286 l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 286 LDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CCSCCC-TTTSCEEEEEECTTC
T ss_pred CCCChh-HhhCCCCCEEeccCC
Confidence 888887 889999999999997
No 70
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.70 E-value=6.6e-20 Score=209.92 Aligned_cols=351 Identities=13% Similarity=0.002 Sum_probs=224.8
Q ss_pred cceeEEEEEecCCc-----cccccccCCCCccEEEEccccccccchhhhHHHHHhhcCC----cceEEEcCCcccccCCC
Q 002362 529 EKVRHLLLIVGNGA-----SFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFREST----SLRVLEFGDWARSLQLG 599 (930)
Q Consensus 529 ~~~r~l~l~~~~~~-----~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~----~Lr~L~L~~~~~~~~~~ 599 (930)
+.++++.+..+.+. .++..+..+++|++|+++++.+. ...+..++..++ +|++|+|++|... ..
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~-----~~~~~~l~~~l~~~~~~L~~L~L~~n~i~--~~ 100 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG-----DVGVHCVLQGLQTPSCKIQKLSLQNCCLT--GA 100 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH-----HHHHHHHHHTTCSTTCCCCEEECTTSCCB--GG
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC-----hHHHHHHHHHHhhCCCceeEEEccCCCCC--HH
Confidence 46788899888776 33556778899999999998642 222344455565 7999999976432 11
Q ss_pred CCcccCcccccCCCCCeeeccCCccccc-cccc-----ccCCcccEEeccCCCCCc----cccccccccCCcceEeecCc
Q 002362 600 PLTRIPRNIERLVHLRYLNLSNQSIRKL-PDTL-----CELYNLQKLDISCCCKLK----ELPQGIGKLINMRHLLNYGT 669 (930)
Q Consensus 600 ~~~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i-----~~L~~L~~L~l~~~~~~~----~lp~~i~~L~~L~~L~l~~~ 669 (930)
....+|..+..+++|++|+|++|.++.. +..+ ..+++|++|++++|.... .++..+..+++|++|++++|
T Consensus 101 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 1235788899999999999999998732 2222 236689999999997433 35677788899999999998
Q ss_pred ccccccCCcCC-----CCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCC
Q 002362 670 ISLRYMPVGIG-----RLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNL 744 (930)
Q Consensus 670 ~~~~~~p~~i~-----~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L 744 (930)
......+..+. .+++|++|++..+.....-...++..+..+++|+.|++.++...... ...........+++|
T Consensus 181 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~--~~~l~~~~~~~~~~L 258 (461)
T 1z7x_W 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG--MAELCPGLLHPSSRL 258 (461)
T ss_dssp BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH--HHHHHHHHTSTTCCC
T ss_pred CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH--HHHHHHHHhcCCCCc
Confidence 53322222222 35689999876654332100012334556777887777666432110 000111123357899
Q ss_pred CeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccc-----cccCccEEEeeCCCCCCC---
Q 002362 745 SCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMM-----SLTNLRSLDLDDCENCEK--- 816 (930)
Q Consensus 745 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~-----~l~~L~~L~L~~~~~~~~--- 816 (930)
+.|++++|.++.. ....++..+..+++|++|++++|.+....+..+. ..++|+.|+|++|.+...
T Consensus 259 ~~L~L~~n~l~~~-------~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 331 (461)
T 1z7x_W 259 RTLWIWECGITAK-------GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS 331 (461)
T ss_dssp CEEECTTSCCCHH-------HHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred eEEECcCCCCCHH-------HHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHH
Confidence 9999999877541 1223555666788999999999976542222233 236999999999986653
Q ss_pred -CCC-CCCCCCcceeeeccCcCceEeCCccccCcccccCccccceeeccc---------------cccccceeeeccCCc
Q 002362 817 -LPP-LGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWI---------------IMPRLSSLTFDSCPK 879 (930)
Q Consensus 817 -l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~---------------~lp~L~~L~l~~c~~ 879 (930)
++. +..+++|+.|+|++|. +...+............++|++|.+++| .+++|+.|++++|+
T Consensus 332 ~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~- 409 (461)
T 1z7x_W 332 HFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC- 409 (461)
T ss_dssp HHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS-
T ss_pred HHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC-
Confidence 222 6677999999999763 2211111000000012679999999988 36899999999995
Q ss_pred cCC---------CCCCCCCCCCccEEEEec
Q 002362 880 LKA---------LPDHFHQTTTLKEFNIGW 900 (930)
Q Consensus 880 L~~---------lp~~l~~l~~L~~L~l~~ 900 (930)
+.. +|.. ..+|+.|.+.+
T Consensus 410 i~~~~~~~l~~~l~~~---~~~L~~L~~~~ 436 (461)
T 1z7x_W 410 LGDAGILQLVESVRQP---GCLLEQLVLYD 436 (461)
T ss_dssp CCHHHHHHHHHHHTST---TCCCCEEECTT
T ss_pred CCHHHHHHHHHHhccC---Ccchhheeecc
Confidence 432 3433 34566666655
No 71
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=1.5e-18 Score=205.47 Aligned_cols=321 Identities=15% Similarity=0.117 Sum_probs=161.3
Q ss_pred CCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccccccc
Q 002362 550 GVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPD 629 (930)
Q Consensus 550 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~ 629 (930)
.+++|++|.+.++...+. ....+..++..++.|+.|++++|... ......++..+.++++|++|++++|.+..+|.
T Consensus 162 ~~~~L~~L~L~~~~~~~~--~~~~l~~~~~~~~~L~~L~L~~n~~~--~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~ 237 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEK--DGKWLHELAQHNTSLEVLNFYMTEFA--KISPKDLETIARNCRSLVSVKVGDFEILELVG 237 (592)
T ss_dssp HCTTCSEEECTTCEEECC--CSHHHHHHHHHCCCCCEEECTTCCCS--SCCHHHHHHHHHHCTTCCEEECSSCBGGGGHH
T ss_pred hCCCCCEEECccccccCc--chhHHHHHHhcCCCccEEEeeccCCC--ccCHHHHHHHHhhCCCCcEEeccCccHHHHHH
Confidence 456666666665542111 11123344555666666666643221 00012344444556666666666666666666
Q ss_pred ccccCCcccEEeccCCCCC---ccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCcccc
Q 002362 630 TLCELYNLQKLDISCCCKL---KELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACR 706 (930)
Q Consensus 630 ~i~~L~~L~~L~l~~~~~~---~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~ 706 (930)
.+.++++|+.|+++.+... ...+..+..+++|+.|.+.++ ....+|..+..+++|++|++..+..... .....
T Consensus 238 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~---~~~~~ 313 (592)
T 3ogk_B 238 FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETE---DHCTL 313 (592)
T ss_dssp HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHH---HHHHH
T ss_pred HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHH---HHHHH
Confidence 5666666666666543221 223334455555666655543 3344555555566666666544331110 00111
Q ss_pred cccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEe-----------eCCCCCCcCCCccchHHHhhcCCC
Q 002362 707 LESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLF-----------NKEEGDGQRRKNEDDQLLLEFLQP 775 (930)
Q Consensus 707 l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~-----------~~~~~~~~~~~~~~~~~~~~~l~~ 775 (930)
+..+++|+.|++..+ + ...........+++|+.|+++. +.++ ...+......
T Consensus 314 ~~~~~~L~~L~L~~~-----~--~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~----------~~~~~~l~~~ 376 (592)
T 3ogk_B 314 IQKCPNLEVLETRNV-----I--GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS----------QRGLIALAQG 376 (592)
T ss_dssp HTTCTTCCEEEEEGG-----G--HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC----------HHHHHHHHHH
T ss_pred HHhCcCCCEEeccCc-----c--CHHHHHHHHHhCCCCCEEEeecCccccccccccCccC----------HHHHHHHHhh
Confidence 234444444443311 0 0111122234566777777772 2221 1122222334
Q ss_pred CCCcceEEEeeccCCCCCCcccc-cccCccEEEeeCCC---CCCCCC------C-CCCCCCcceeeeccCcC-ceEeCCc
Q 002362 776 PPNLRKLLIGSYRGKTVFPPWMM-SLTNLRSLDLDDCE---NCEKLP------P-LGKLPSLEKLSISFMCS-VKRVDNE 843 (930)
Q Consensus 776 ~~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~L~~~~---~~~~l~------~-l~~l~~L~~L~L~~~~~-l~~~~~~ 843 (930)
+++|++|++..+.+++..+..+. .+++|+.|+|++|. ..+..| . +..+++|+.|+|+.|.. +.. ..
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~--~~ 454 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD--LG 454 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH--HH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH--HH
Confidence 67788888866665543344444 37778888887432 222221 1 44577788888865442 110 00
Q ss_pred cccCcccccCccccceeeccc------------cccccceeeeccCCccCC--CCCCCCCCCCccEEEEec
Q 002362 844 ILGIEITIAFPKLKSLTISWI------------IMPRLSSLTFDSCPKLKA--LPDHFHQTTTLKEFNIGW 900 (930)
Q Consensus 844 ~~~~~~~~~f~~L~~L~l~~~------------~lp~L~~L~l~~c~~L~~--lp~~l~~l~~L~~L~l~~ 900 (930)
+.. ....+++|+.|.++++ .+++|+.|+|++|+ +.. ++..+..+++|++|++++
T Consensus 455 ~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~ 522 (592)
T 3ogk_B 455 LSY--IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQG 522 (592)
T ss_dssp HHH--HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEES
T ss_pred HHH--HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcC
Confidence 000 0114677888887766 46778888888886 432 343345577888888888
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=2.9e-18 Score=185.22 Aligned_cols=242 Identities=14% Similarity=0.046 Sum_probs=174.4
Q ss_pred ccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccccc
Q 002362 548 TCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKL 627 (930)
Q Consensus 548 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~l 627 (930)
+..+++|+.|+++++.+.. ..+..|..+++|++|+|++|. +..++. ++.+++|++|++++|.++.+
T Consensus 30 ~~~~~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~Ls~n~-------l~~~~~-~~~l~~L~~L~Ls~n~l~~l 95 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQ------ISAADLAPFTKLELLNLSSNV-------LYETLD-LESLSTLRTLDLNNNYVQEL 95 (317)
T ss_dssp HTTGGGCSEEECTTSCCCC------CCHHHHTTCTTCCEEECTTSC-------CEEEEE-ETTCTTCCEEECCSSEEEEE
T ss_pred hccCCCCCEEECcCCccCc------CCHHHhhCCCcCCEEECCCCc-------CCcchh-hhhcCCCCEEECcCCccccc
Confidence 3456788899988886432 244567888899999998653 444443 88888999999999988877
Q ss_pred ccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCccccc
Q 002362 628 PDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRL 707 (930)
Q Consensus 628 p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l 707 (930)
|. +++|++|++++|. +..+|.. .+++|++|++++|......|..++.+++|++|++..+.... ..+..+
T Consensus 96 ~~----~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~ 164 (317)
T 3o53_A 96 LV----GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----VNFAEL 164 (317)
T ss_dssp EE----CTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE----EEGGGG
T ss_pred cC----CCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc----ccHHHH
Confidence 63 4888999999887 5555533 36788999998885444344577888888888876554332 112223
Q ss_pred -ccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEee
Q 002362 708 -ESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGS 786 (930)
Q Consensus 708 -~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 786 (930)
..+++|+.|++.++..... + ....+++|+.|++++|.+.. ++..+..+++|+.|++++
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~-~--------~~~~l~~L~~L~Ls~N~l~~------------l~~~~~~l~~L~~L~L~~ 223 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDV-K--------GQVVFAKLKTLDLSSNKLAF------------MGPEFQSAAGVTWISLRN 223 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEE-E--------CCCCCTTCCEEECCSSCCCE------------ECGGGGGGTTCSEEECTT
T ss_pred hhccCcCCEEECCCCcCccc-c--------cccccccCCEEECCCCcCCc------------chhhhcccCcccEEECcC
Confidence 3567777777766654322 1 23347899999999998875 344566789999999999
Q ss_pred ccCCCCCCcccccccCccEEEeeCCCCC-CCCCC-CCCCCCcceeeeccCcC
Q 002362 787 YRGKTVFPPWMMSLTNLRSLDLDDCENC-EKLPP-LGKLPSLEKLSISFMCS 836 (930)
Q Consensus 787 ~~~~~~~p~~~~~l~~L~~L~L~~~~~~-~~l~~-l~~l~~L~~L~L~~~~~ 836 (930)
|.+.. +|.++..+++|+.|+|++|.+. ..+|. ++.+++|+.|++.++..
T Consensus 224 N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~ 274 (317)
T 3o53_A 224 NKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274 (317)
T ss_dssp SCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred Ccccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchh
Confidence 99987 8999999999999999999876 33333 66777788777775543
No 73
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=3e-18 Score=202.85 Aligned_cols=344 Identities=11% Similarity=0.028 Sum_probs=223.3
Q ss_pred cceeEEEEEecCCccc-cccccC-CCC-ccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccC
Q 002362 529 EKVRHLLLIVGNGASF-PVSTCG-VKR-MRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIP 605 (930)
Q Consensus 529 ~~~r~l~l~~~~~~~~-~~~~~~-~~~-Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp 605 (930)
..++++.+..+.+... ...+.. +++ |++|.+.++.. .....+..+..++++|++|+|++|... ......++
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~----~~~~~l~~~~~~~~~L~~L~L~~~~~~--~~~~~~l~ 185 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG----FTTDGLLSIVTHCRKIKTLLMEESSFS--EKDGKWLH 185 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE----EEHHHHHHHHHHCTTCSEEECTTCEEE--CCCSHHHH
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC----cCHHHHHHHHhhCCCCCEEECcccccc--CcchhHHH
Confidence 4577788877654321 122222 344 99999988752 122234555678999999999977533 11112244
Q ss_pred cccccCCCCCeeeccCCccc-----ccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccc---cccCC
Q 002362 606 RNIERLVHLRYLNLSNQSIR-----KLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISL---RYMPV 677 (930)
Q Consensus 606 ~~i~~L~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~---~~~p~ 677 (930)
..+..+++|++|++++|.++ .++..+.++++|++|++++|. +..+|..+..+++|++|+++.+... ...+.
T Consensus 186 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 264 (592)
T 3ogk_B 186 ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264 (592)
T ss_dssp HHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSS
T ss_pred HHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHH
Confidence 55667889999999999885 456667789999999999987 6778888999999999999754322 23445
Q ss_pred cCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCC
Q 002362 678 GIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGD 757 (930)
Q Consensus 678 ~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 757 (930)
.++.+++|+.|++..+.. ..++..+..+++|+.|++.++.. . .......+..+++|+.|+++. ...
T Consensus 265 ~l~~~~~L~~L~l~~~~~-----~~l~~~~~~~~~L~~L~Ls~~~l----~--~~~~~~~~~~~~~L~~L~L~~-~~~-- 330 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGP-----NEMPILFPFAAQIRKLDLLYALL----E--TEDHCTLIQKCPNLEVLETRN-VIG-- 330 (592)
T ss_dssp CCCCCTTCCEEEETTCCT-----TTGGGGGGGGGGCCEEEETTCCC----C--HHHHHHHHTTCTTCCEEEEEG-GGH--
T ss_pred HhhccccccccCccccch-----hHHHHHHhhcCCCcEEecCCCcC----C--HHHHHHHHHhCcCCCEEeccC-ccC--
Confidence 677788888876544321 12355566778888888776552 1 111222357789999999983 221
Q ss_pred CcCCCccchHHHhhcCCCCCCcceEEEee----------c-cCCCC-CCcccccccCccEEEeeCCCCCCCCC-CCCC-C
Q 002362 758 GQRRKNEDDQLLLEFLQPPPNLRKLLIGS----------Y-RGKTV-FPPWMMSLTNLRSLDLDDCENCEKLP-PLGK-L 823 (930)
Q Consensus 758 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~----------~-~~~~~-~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~-l 823 (930)
...+......+++|++|++++ + .++.. ++.....+++|++|+++.+.+.+..+ .++. +
T Consensus 331 --------~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 402 (592)
T 3ogk_B 331 --------DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL 402 (592)
T ss_dssp --------HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC
T ss_pred --------HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC
Confidence 122333445678899999994 3 32211 22223468999999997766554322 2444 8
Q ss_pred CCcceeeeccCc---CceEeCCccccCcccccCccccceeeccc--------------cccccceeeeccCCccCC--CC
Q 002362 824 PSLEKLSISFMC---SVKRVDNEILGIEITIAFPKLKSLTISWI--------------IMPRLSSLTFDSCPKLKA--LP 884 (930)
Q Consensus 824 ~~L~~L~L~~~~---~l~~~~~~~~~~~~~~~f~~L~~L~l~~~--------------~lp~L~~L~l~~c~~L~~--lp 884 (930)
++|+.|++++|. .++..+.+-.-......+++|+.|.++.+ .+|+|+.|+|++|. +.. ++
T Consensus 403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~ 481 (592)
T 3ogk_B 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLM 481 (592)
T ss_dssp CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHH
T ss_pred CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHH
Confidence 999999998543 33221100000000125899999999532 38999999999985 542 45
Q ss_pred CCCCCCCCccEEEEecCch
Q 002362 885 DHFHQTTTLKEFNIGWNCG 903 (930)
Q Consensus 885 ~~l~~l~~L~~L~l~~nc~ 903 (930)
..+..+++|++|+|++ |+
T Consensus 482 ~~~~~~~~L~~L~l~~-n~ 499 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRG-CC 499 (592)
T ss_dssp HHHTCCTTCCEEEEES-CC
T ss_pred HHHhcCcccCeeeccC-CC
Confidence 4557789999999999 54
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=7.6e-17 Score=173.61 Aligned_cols=226 Identities=19% Similarity=0.128 Sum_probs=135.4
Q ss_pred ceEEEcCCcccccCCCCCcccCcccc-------cCCCCCeeeccCCccc-cccccc--ccCCcccEEeccCCCCCccccc
Q 002362 584 LRVLEFGDWARSLQLGPLTRIPRNIE-------RLVHLRYLNLSNQSIR-KLPDTL--CELYNLQKLDISCCCKLKELPQ 653 (930)
Q Consensus 584 Lr~L~L~~~~~~~~~~~~~~lp~~i~-------~L~~Lr~L~L~~~~i~-~lp~~i--~~L~~L~~L~l~~~~~~~~lp~ 653 (930)
|+.|+|++|... . ..+|..+. ++.+|++|+|++|.++ .+|..+ ..+++|++|++++|. +..+|.
T Consensus 65 L~~L~L~~n~l~----~-~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~ 138 (312)
T 1wwl_A 65 IKSLSLKRLTVR----A-ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDA 138 (312)
T ss_dssp HHHCCCCEEEEE----E-EECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSS
T ss_pred Hhhccccccccc----C-CCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhH
Confidence 666666644331 1 13454444 5677777777777766 466655 667777777777766 444466
Q ss_pred ccccc-----CCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCcccc--cccccCCCcCCeeeeecccC
Q 002362 654 GIGKL-----INMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACR--LESLRSLELLQVCGIRRLGN 726 (930)
Q Consensus 654 ~i~~L-----~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~--l~~L~~L~~L~~~~~~~~~~ 726 (930)
.+..+ ++|++|++++|......|..++.+++|++|++.++....... .+.. +..+++|+.|++.++...
T Consensus 139 ~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~~~~~l~~L~~L~L~~N~l~-- 214 (312)
T 1wwl_A 139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG--LISALCPLKFPTLQVLALRNAGME-- 214 (312)
T ss_dssp HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH--HHHHSCTTSCTTCCEEECTTSCCC--
T ss_pred HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH--HHHHHHhccCCCCCEEECCCCcCc--
Confidence 66665 677777777764333333566777777777665443221000 0111 144555555555444321
Q ss_pred CCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEE
Q 002362 727 VTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSL 806 (930)
Q Consensus 727 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 806 (930)
.........+..+++|+.|++++|.+.+.. ....+..+++|++|++++|.+.. +|.++. ++|+.|
T Consensus 215 --~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----------~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L 279 (312)
T 1wwl_A 215 --TPSGVCSALAAARVQLQGLDLSHNSLRDAA----------GAPSCDWPSQLNSLNLSFTGLKQ-VPKGLP--AKLSVL 279 (312)
T ss_dssp --CHHHHHHHHHHTTCCCSEEECTTSCCCSSC----------CCSCCCCCTTCCEEECTTSCCSS-CCSSCC--SEEEEE
T ss_pred --chHHHHHHHHhcCCCCCEEECCCCcCCccc----------chhhhhhcCCCCEEECCCCccCh-hhhhcc--CCceEE
Confidence 111111122345678888888888776521 01234456788888888888875 787776 788888
Q ss_pred EeeCCCCCCCCCCCCCCCCcceeeeccCc
Q 002362 807 DLDDCENCEKLPPLGKLPSLEKLSISFMC 835 (930)
Q Consensus 807 ~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 835 (930)
+|++|.+.+. |.+..+++|+.|+|++++
T Consensus 280 ~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 280 DLSYNRLDRN-PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp ECCSSCCCSC-CCTTTSCEEEEEECTTCT
T ss_pred ECCCCCCCCC-hhHhhCCCCCEEeccCCC
Confidence 8888876554 668888888888888653
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=4e-16 Score=167.36 Aligned_cols=190 Identities=21% Similarity=0.233 Sum_probs=125.9
Q ss_pred cCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccC
Q 002362 580 ESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLI 659 (930)
Q Consensus 580 ~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~ 659 (930)
.+++|+.|++++| .+..+| .+..+++|++|+|++|.++.+|. +..+++|++|++++|. +..+| .+..++
T Consensus 39 ~l~~L~~L~l~~~-------~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~ 107 (308)
T 1h6u_A 39 DLDGITTLSAFGT-------GVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQ 107 (308)
T ss_dssp HHHTCCEEECTTS-------CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCT
T ss_pred HcCCcCEEEeeCC-------CccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCC
Confidence 4567777777743 344455 56777778888888877777776 7777788888888776 55555 477777
Q ss_pred CcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhcccc
Q 002362 660 NMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELD 739 (930)
Q Consensus 660 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~ 739 (930)
+|++|++++| .+..+|. ++.+++|++|++..+.... ++ .+.
T Consensus 108 ~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~-----------------------------~~--------~l~ 148 (308)
T 1h6u_A 108 SIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQITN-----------------------------IS--------PLA 148 (308)
T ss_dssp TCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSCCCC-----------------------------CG--------GGG
T ss_pred CCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCccCc-----------------------------Cc--------ccc
Confidence 7888877777 3444443 6666666666543322111 00 133
Q ss_pred CCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCC
Q 002362 740 KMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP 819 (930)
Q Consensus 740 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~ 819 (930)
.+++|+.|+++.|.+.. +.. +..+++|+.|++++|.+.. +|. +..+++|+.|+|++|.+.+ +++
T Consensus 149 ~l~~L~~L~l~~n~l~~------------~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~-~~~ 212 (308)
T 1h6u_A 149 GLTNLQYLSIGNAQVSD------------LTP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD-VSP 212 (308)
T ss_dssp GCTTCCEEECCSSCCCC------------CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB-CGG
T ss_pred CCCCccEEEccCCcCCC------------Chh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCc-ccc
Confidence 45667777777776654 122 5667788888888887776 554 6778888888888886554 345
Q ss_pred CCCCCCcceeeeccCc
Q 002362 820 LGKLPSLEKLSISFMC 835 (930)
Q Consensus 820 l~~l~~L~~L~L~~~~ 835 (930)
+..+++|+.|++++|+
T Consensus 213 l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 213 LANTSNLFIVTLTNQT 228 (308)
T ss_dssp GTTCTTCCEEEEEEEE
T ss_pred ccCCCCCCEEEccCCe
Confidence 7788888888887654
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=4e-16 Score=164.90 Aligned_cols=197 Identities=19% Similarity=0.166 Sum_probs=102.9
Q ss_pred cceEEEcCCcccccCCCCCcccCc-ccccCCCCCeeeccCCccccccc-ccccCCcccEEeccCCCCCccccccccccCC
Q 002362 583 SLRVLEFGDWARSLQLGPLTRIPR-NIERLVHLRYLNLSNQSIRKLPD-TLCELYNLQKLDISCCCKLKELPQGIGKLIN 660 (930)
Q Consensus 583 ~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~ 660 (930)
.|++|++++| .+..+|. .++++++|++|++++|.++.++. .+.++++|++|++++|......|..+..+++
T Consensus 29 ~l~~L~ls~n-------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 29 STKNLDLSFN-------PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp TCCEEECTTC-------CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CccEEECCCC-------cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence 4666666633 2333333 55566666666666666655543 4556666666666666522223344566666
Q ss_pred cceEeecCcccccccC-CcCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeeccc-CCCChhhhhhccc
Q 002362 661 MRHLLNYGTISLRYMP-VGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLG-NVTDVGEAKRLEL 738 (930)
Q Consensus 661 L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~-~~~~~~~~~~~~l 738 (930)
|++|++++|.. ..++ ..++.+++|++|++.. +.... .++. .+
T Consensus 102 L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~----------------------------n~l~~~~l~~-------~~ 145 (276)
T 2z62_A 102 LQKLVAVETNL-ASLENFPIGHLKTLKELNVAH----------------------------NLIQSFKLPE-------YF 145 (276)
T ss_dssp CCEEECTTSCC-CCSTTCCCTTCTTCCEEECCS----------------------------SCCCCCCCCG-------GG
T ss_pred ccEEECCCCCc-cccCchhcccCCCCCEEECcC----------------------------CccceecCch-------hh
Confidence 66666665532 2222 2345555555554332 22111 0111 34
Q ss_pred cCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcc----eEEEeeccCCCCCCcccccccCccEEEeeCCCCC
Q 002362 739 DKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLR----KLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENC 814 (930)
Q Consensus 739 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~ 814 (930)
..+++|+.|++++|.+... ....+..+++|+ +|++++|.+.. +|.......+|+.|+|++|.+.
T Consensus 146 ~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~l~~L~~l~l~L~ls~n~l~~-~~~~~~~~~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 146 SNLTNLEHLDLSSNKIQSI-----------YCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLK 213 (276)
T ss_dssp GGCTTCCEEECCSSCCCEE-----------CGGGGHHHHTCTTCCEEEECCSSCCCE-ECTTSSCSCCEEEEECCSSCCS
T ss_pred ccCCCCCEEECCCCCCCcC-----------CHHHhhhhhhccccceeeecCCCcccc-cCccccCCCcccEEECCCCcee
Confidence 4556667777766665431 011122223333 66777777665 5544444456777777777655
Q ss_pred CCCCC-CCCCCCcceeeeccC
Q 002362 815 EKLPP-LGKLPSLEKLSISFM 834 (930)
Q Consensus 815 ~~l~~-l~~l~~L~~L~L~~~ 834 (930)
...+. ++.+++|+.|+|+++
T Consensus 214 ~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 214 SVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CCCTTTTTTCCSCCEEECCSS
T ss_pred ecCHhHhcccccccEEEccCC
Confidence 43333 566777777777644
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=2.2e-15 Score=155.47 Aligned_cols=203 Identities=19% Similarity=0.201 Sum_probs=117.9
Q ss_pred CcccCcccccCCCCCeeeccCCccccccc-ccccCCcccEEeccCCCCCccccc-cccccCCcceEeecCcccccccCC-
Q 002362 601 LTRIPRNIERLVHLRYLNLSNQSIRKLPD-TLCELYNLQKLDISCCCKLKELPQ-GIGKLINMRHLLNYGTISLRYMPV- 677 (930)
Q Consensus 601 ~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~- 677 (930)
+..+|. +. .+|++|++++|.++.+|. .+..+++|++|++++|..+..+|. .+..+++|++|++++|+.+..+|.
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 455666 43 378888888888888776 677888888888888864556654 577888888888876324444442
Q ss_pred cCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCC
Q 002362 678 GIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGD 757 (930)
Q Consensus 678 ~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 757 (930)
.++.+++|++|+ +++|.+..
T Consensus 100 ~f~~l~~L~~L~-----------------------------------------------------------l~~n~l~~- 119 (239)
T 2xwt_C 100 ALKELPLLKFLG-----------------------------------------------------------IFNTGLKM- 119 (239)
T ss_dssp SEECCTTCCEEE-----------------------------------------------------------EEEECCCS-
T ss_pred HhCCCCCCCEEe-----------------------------------------------------------CCCCCCcc-
Confidence 234444444444 33333322
Q ss_pred CcCCCccchHHHhhcCCCCCCcc---eEEEeec-cCCCCCCcccccccCcc-EEEeeCCCCCCCCCC-CCCCCCcceeee
Q 002362 758 GQRRKNEDDQLLLEFLQPPPNLR---KLLIGSY-RGKTVFPPWMMSLTNLR-SLDLDDCENCEKLPP-LGKLPSLEKLSI 831 (930)
Q Consensus 758 ~~~~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~p~~~~~l~~L~-~L~L~~~~~~~~l~~-l~~l~~L~~L~L 831 (930)
++. +..+++|+ +|++++| .+....+.++..+++|+ .|++++|.+. .+|. ....++|+.|+|
T Consensus 120 -----------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L 186 (239)
T 2xwt_C 120 -----------FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYL 186 (239)
T ss_dssp -----------CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEEC
T ss_pred -----------ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEc
Confidence 111 22333333 5555555 44442233455666677 7777666554 3332 222266777777
Q ss_pred ccCcCceEeCCccccCcccccCccccceeeccccc-cccceeeeccCCccCCCCCCCCCCCCccEEEEec
Q 002362 832 SFMCSVKRVDNEILGIEITIAFPKLKSLTISWIIM-PRLSSLTFDSCPKLKALPDHFHQTTTLKEFNIGW 900 (930)
Q Consensus 832 ~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~l-p~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~ 900 (930)
++|..++.++...+. .+ ++|+.|++++| .++.+|.. .+++|+.|++++
T Consensus 187 ~~n~~l~~i~~~~~~------------------~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFG------------------GVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARN 235 (239)
T ss_dssp TTCTTCCEECTTTTT------------------TCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTT
T ss_pred CCCCCcccCCHHHhh------------------ccccCCcEEECCCC-ccccCChh--HhccCceeeccC
Confidence 765444444433221 14 56677777776 56667654 467777777776
No 78
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.63 E-value=3.8e-16 Score=137.66 Aligned_cols=81 Identities=30% Similarity=0.499 Sum_probs=76.1
Q ss_pred hHHHHHHHHHhcchhHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhc--ccCchHHHHHHHHHHhhHHhhhhhHH
Q 002362 4 AIVSPLLEKLISFSVKEVTQQVKLVKGLEQEVEKLTIHLQMIHAVLNDAEQR--QVKEKSVRLWLGRLKDVSYDIEDVLD 81 (930)
Q Consensus 4 ~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~l~~~~yd~ed~ld 81 (930)
|+|+++++||++ ++.+|+.++.|++++++.|+++|++|++||.+|+.+ +..++.++.|+++||++|||+||+||
T Consensus 1 a~v~~ll~KL~~----ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD 76 (115)
T 3qfl_A 1 AAISNLIPKLGE----LLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD 76 (115)
T ss_dssp CTTCSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999 889999999999999999999999999999999987 56789999999999999999999999
Q ss_pred HHHHHHH
Q 002362 82 EWITARR 88 (930)
Q Consensus 82 ~~~~~~~ 88 (930)
+|.++..
T Consensus 77 ~f~~~~~ 83 (115)
T 3qfl_A 77 KFLVQVD 83 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998864
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.63 E-value=7e-15 Score=165.30 Aligned_cols=300 Identities=14% Similarity=0.061 Sum_probs=181.1
Q ss_pred CCceecchhhHHHHHHHh-ccCCCCCCCCeEEEEE--EecCCChHHHHHHHHhchHHHH---hcCC-eEEEEEeCCCccH
Q 002362 169 EEEICGRVDEKNELLSKL-LCESSDSPKGLHIISI--IGMGGMGKTTLAQLACNHEEVK---RKFD-KILWVCVSETFEE 241 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~~~~ 241 (930)
+..++||+++++++.+++ .....+.......+.| +|++|+||||||+.+++..... ..|+ .++|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999988 4321100013456666 9999999999999999853221 1233 3678887777788
Q ss_pred HHHHHHHHHHhcCCCCC-CccHHHHHHHHHHHhc--CceEEEEEeCccccCc------cChhhhhhhhccC---C--CCc
Q 002362 242 FRVAKAIVEALDGHESR-LGEFQSLIKHIYESVA--GMCFLLVLDDVWDGNY------MKWEPFFHCLKNG---L--HRS 307 (930)
Q Consensus 242 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~------~~~~~l~~~l~~~---~--~gs 307 (930)
..++..|+.+++..... ..+..++...+.+.+. +++++|||||+|.... ..+..+...+... + .+.
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 89999999998754322 2345556666666664 7899999999987421 2223333333322 2 344
Q ss_pred EEEEEcCChHHHhhh--------CC-cceEeCCCCChHHHHHHHHHHH---cCCCCchhhHHHHHHHHHHHHHcC-----
Q 002362 308 KILVTTRKKSVASMM--------GS-TNIISIKELTEEECRLLFNKIA---FSDRPIEEREKLEQIGRKIANKCK----- 370 (930)
Q Consensus 308 ~iivTtr~~~v~~~~--------~~-~~~~~l~~L~~~~~~~lf~~~~---~~~~~~~~~~~l~~~~~~i~~~c~----- 370 (930)
.||+||+...+...+ .. ...+++.+++.++++++|...+ +.... .. .+....|++.|+
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~--~~---~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTV--WE---PRHLELISDVYGEDKGG 255 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTS--CC---HHHHHHHHHHHCGGGTS
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCC--CC---hHHHHHHHHHHHHhccC
Confidence 588888765433211 11 2239999999999999997654 32111 11 234677888898
Q ss_pred -CchhHHHHHHhhhc------CC--CCHHHHHHHHhcccccchhhhhhHHHHHHHhhhcCChhHHHHHhHhcCCC--CCc
Q 002362 371 -GLPLAAKIIGSLMR------SK--ETEEEWRRILNSGLWKVEEIEKDILSSLLLSYNDLPSKVKKCFSYCAIFP--KDY 439 (930)
Q Consensus 371 -glPLai~~~~~~l~------~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~lsy~~L~~~~k~cf~~~s~fp--~~~ 439 (930)
|.|..+..+..... .. -+.+.+..+...... ...+.-++..||.+.+.++..++.+. .+.
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGME 326 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCS
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCC
Confidence 99976655543221 11 123333333321100 22344467889999999998888654 233
Q ss_pred ccChHHHHHHHH--H-hCCcCCCcchhHHHHHHHHHHHHHHccCCcccc
Q 002362 440 NIEKDRLITLWM--A-QGYLDTEQDEEMESKGEEYFGILASRSFFQEFT 485 (930)
Q Consensus 440 ~i~~~~Li~~w~--a-~g~i~~~~~~~~e~~~~~~~~~L~~~~l~~~~~ 485 (930)
.+....+...+. + .-+ .. . .........++++|+..+++....
T Consensus 327 ~~~~~~~~~~~~~~~~~~~-~~-~-~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLTMY-NV-K-PRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp SBCHHHHHHHHHHHHHHHS-CC-C-CCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CccHHHHHHHHHHHHHhhc-CC-C-CCCHHHHHHHHHHHHhCCCEEeec
Confidence 555666555442 2 111 10 0 011234567899999999997654
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=3.4e-15 Score=157.00 Aligned_cols=196 Identities=22% Similarity=0.244 Sum_probs=127.5
Q ss_pred cceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccccccc-ccccCCcccEEeccCCCCCcccccc-ccccCC
Q 002362 583 SLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPD-TLCELYNLQKLDISCCCKLKELPQG-IGKLIN 660 (930)
Q Consensus 583 ~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~ 660 (930)
.++.+++++ . .+..+|..+. .+|++|+|++|.++.+|. .+.++++|++|++++|. +..+|.. +..+++
T Consensus 17 ~~~~l~~~~---~----~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~ 86 (270)
T 2o6q_A 17 NKNSVDCSS---K----KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKN 86 (270)
T ss_dssp TTTEEECTT---S----CCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTT
T ss_pred CCCEEEccC---C----CCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCC
Confidence 456677773 3 4555666554 467778888777777764 57777788888887776 5566554 367777
Q ss_pred cceEeecCcccccccCC-cCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhcccc
Q 002362 661 MRHLLNYGTISLRYMPV-GIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELD 739 (930)
Q Consensus 661 L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~ 739 (930)
|++|++++|. +..+|. .++.+++|++|++..+... ...+. .+.
T Consensus 87 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~----------------------------~~~~~-------~~~ 130 (270)
T 2o6q_A 87 LETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLK----------------------------SLPPR-------VFD 130 (270)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCC----------------------------CCCTT-------TTT
T ss_pred CCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccC----------------------------eeCHH-------HhC
Confidence 7888777773 344443 3455666666554322111 11111 245
Q ss_pred CCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCC
Q 002362 740 KMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP 819 (930)
Q Consensus 740 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~ 819 (930)
.+++|+.|++++|.+... ....+..+++|+.|++++|.+....+..+..+++|+.|+|++|.+....+.
T Consensus 131 ~l~~L~~L~Ls~n~l~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 131 SLTKLTYLSLGYNELQSL-----------PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp TCTTCCEEECCSSCCCCC-----------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCcCCCEEECCCCcCCcc-----------CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence 567788888888776652 122356778888888888888773344577888888888888876654443
Q ss_pred -CCCCCCcceeeeccCc
Q 002362 820 -LGKLPSLEKLSISFMC 835 (930)
Q Consensus 820 -l~~l~~L~~L~L~~~~ 835 (930)
+..+++|+.|+|++++
T Consensus 200 ~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 200 AFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred HhccccCCCEEEecCCC
Confidence 7788888888888654
No 81
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.62 E-value=2e-14 Score=157.64 Aligned_cols=293 Identities=13% Similarity=0.099 Sum_probs=176.8
Q ss_pred cCCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCc------cH
Q 002362 168 DEEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETF------EE 241 (930)
Q Consensus 168 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~ 241 (930)
.+..|+||+++++++.+++.. + +++.|+|++|+|||||++++++. . . .+|+.+.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCH
Confidence 456799999999999998853 1 68999999999999999999873 2 2 6777765432 45
Q ss_pred HHHHHHHHHHhcC-----------------C-CCCCccHHHHHHHHHHHhcC-ceEEEEEeCccccCc------cCh-hh
Q 002362 242 FRVAKAIVEALDG-----------------H-ESRLGEFQSLIKHIYESVAG-MCFLLVLDDVWDGNY------MKW-EP 295 (930)
Q Consensus 242 ~~~~~~i~~~l~~-----------------~-~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~------~~~-~~ 295 (930)
..+...+.+.+.. . .....+..++...+.+.... ++++|||||++..+. ..+ ..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 6666666665432 0 00123456666666655542 389999999976432 112 22
Q ss_pred hhhhhccCCCCcEEEEEcCChHHHhhh-----------CC-cceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 002362 296 FFHCLKNGLHRSKILVTTRKKSVASMM-----------GS-TNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGR 363 (930)
Q Consensus 296 l~~~l~~~~~gs~iivTtr~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~ 363 (930)
+...... .++.++|+|++.......+ +. ...+++.+|+.+|+.+++.+.......... .+.+.
T Consensus 155 L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~----~~~~~ 229 (350)
T 2qen_A 155 FAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP----ENEIE 229 (350)
T ss_dssp HHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHH
T ss_pred HHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHH
Confidence 2222222 2467899998876532211 11 247899999999999999875422111111 13477
Q ss_pred HHHHHcCCchhHHHHHHhhhcCCCCHHHHHH-HHhcccccchhhhhhHHH-HHHHhhhcCChhHHHHHhHhcCCCCCccc
Q 002362 364 KIANKCKGLPLAAKIIGSLMRSKETEEEWRR-ILNSGLWKVEEIEKDILS-SLLLSYNDLPSKVKKCFSYCAIFPKDYNI 441 (930)
Q Consensus 364 ~i~~~c~glPLai~~~~~~l~~~~~~~~w~~-~l~~~~~~~~~~~~~i~~-~l~lsy~~L~~~~k~cf~~~s~fp~~~~i 441 (930)
+|++.|+|+|+++..++..+....+...+.. +.+. ....+.. +-.+.+ . ++..+..+..++. + .+
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~l~~-~-~~~~~~~l~~la~---g-~~ 296 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV-------AKGLIMGELEELRR-R-SPRYVDILRAIAL---G-YN 296 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH-------HHHHHHHHHHHHHH-H-CHHHHHHHHHHHT---T-CC
T ss_pred HHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH-------HHHHHHHHHHHHHh-C-ChhHHHHHHHHHh---C-CC
Confidence 8999999999999998876432122222211 1110 0000111 111222 2 7788888888887 2 23
Q ss_pred ChHHHHHHHHHhCCcCCCcchhHHHHHHHHHHHHHHccCCcccccCCCCceeeEEe-cHHHHHHHH
Q 002362 442 EKDRLITLWMAQGYLDTEQDEEMESKGEEYFGILASRSFFQEFTKSYDNCIMQCKM-HDMVHDFGQ 506 (930)
Q Consensus 442 ~~~~Li~~w~a~g~i~~~~~~~~e~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~m-h~lv~~~a~ 506 (930)
+...+....-+. .- +. .......+++.|.+.+++.... + .|.+ |++++++.+
T Consensus 297 ~~~~l~~~~~~~-~~----~~-~~~~~~~~l~~L~~~gli~~~~----~---~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 297 RWSLIRDYLAVK-GT----KI-PEPRLYALLENLKKMNWIVEED----N---TYKIADPVVATVLR 349 (350)
T ss_dssp SHHHHHHHHHHT-TC----CC-CHHHHHHHHHHHHHTTSEEEET----T---EEEESSHHHHHHHT
T ss_pred CHHHHHHHHHHH-hC----CC-CHHHHHHHHHHHHhCCCEEecC----C---EEEEecHHHHHHHc
Confidence 444554433221 10 11 1244668999999999997541 1 2444 788887653
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=2.6e-15 Score=158.11 Aligned_cols=62 Identities=18% Similarity=0.105 Sum_probs=40.6
Q ss_pred CCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCC-CCCCCCcceeeeccC
Q 002362 773 LQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP-LGKLPSLEKLSISFM 834 (930)
Q Consensus 773 l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~ 834 (930)
+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+.+..+. ++.+++|+.|+|++|
T Consensus 153 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 153 FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 44566677777777766663344456677777777777766654443 677777777777754
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=1.6e-15 Score=160.88 Aligned_cols=62 Identities=26% Similarity=0.155 Sum_probs=29.9
Q ss_pred cccccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCc
Q 002362 606 RNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGT 669 (930)
Q Consensus 606 ~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~ 669 (930)
..+.++++|++|+|++|.|+.+|.. +.+++|++|++++|. +..+|..+..+++|++|++++|
T Consensus 49 ~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 49 ATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFN 110 (290)
T ss_dssp GGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSS
T ss_pred HHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCC
Confidence 3444455555555555554444433 444555555555444 4444444444455555555444
No 84
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.62 E-value=3.8e-17 Score=193.46 Aligned_cols=352 Identities=15% Similarity=0.093 Sum_probs=197.6
Q ss_pred cceeEEEEEecCCccc-ccccc-CCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCc
Q 002362 529 EKVRHLLLIVGNGASF-PVSTC-GVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPR 606 (930)
Q Consensus 529 ~~~r~l~l~~~~~~~~-~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~ 606 (930)
..++++.+..+.+... +..+. .+++|++|.+.++.. .....++.++.++++|++|+|++|... ......++.
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~----~~~~~l~~~~~~~~~L~~L~L~~~~i~--~~~~~~l~~ 178 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG----FSTDGLAAIAATCRNLKELDLRESDVD--DVSGHWLSH 178 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE----EEHHHHHHHHHHCTTCCEEECTTCEEE--CCCGGGGGG
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC----CCHHHHHHHHHhCCCCCEEeCcCCccC--CcchHHHHH
Confidence 4577888887665421 22232 578999999998742 122235566778999999999977533 112233444
Q ss_pred ccccCCCCCeeeccCCc--cc--ccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCccc------ccccC
Q 002362 607 NIERLVHLRYLNLSNQS--IR--KLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTIS------LRYMP 676 (930)
Q Consensus 607 ~i~~L~~Lr~L~L~~~~--i~--~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~------~~~~p 676 (930)
....+++|++|++++|. +. .++..+.++++|++|++++|..+..+|..+..+++|++|++..+.. +..++
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 45577899999999986 32 3344445679999999999966777888888999999998655421 12233
Q ss_pred CcCCCCCCCCcC------------------------CceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhh
Q 002362 677 VGIGRLTSLRTL------------------------DEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGE 732 (930)
Q Consensus 677 ~~i~~l~~L~~L------------------------~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~ 732 (930)
..++++++|+.| ++..+.... ......+..+++|+.|.+.++.. ..
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~---~~l~~~~~~~~~L~~L~l~~~~~-------~~ 328 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS---YDLVKLLCQCPKLQRLWVLDYIE-------DA 328 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH---HHHHHHHTTCTTCCEEEEEGGGH-------HH
T ss_pred HHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH---HHHHHHHhcCCCcCEEeCcCccC-------HH
Confidence 334444444444 332222100 00001122333344333332200 01
Q ss_pred hhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccc-cccCccEEEee--
Q 002362 733 AKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMM-SLTNLRSLDLD-- 809 (930)
Q Consensus 733 ~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~L~-- 809 (930)
........+++|+.|++..+...+. ..........+......+++|++|.+.++.++...+..+. .+++|+.|+|+
T Consensus 329 ~l~~l~~~~~~L~~L~L~~~~~~g~-~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~ 407 (594)
T 2p1m_B 329 GLEVLASTCKDLRELRVFPSEPFVM-EPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCII 407 (594)
T ss_dssp HHHHHHHHCTTCCEEEEECSCTTCS-SCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHHHHhCCCCCEEEEecCccccc-ccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecc
Confidence 1111122356666666643210000 0000011111222222357788887766665442233333 57888888888
Q ss_pred ---CCCCCCCCCC-------CCCCCCcceeeeccCcCceEeCCccccCcccccCccccceeeccc------------ccc
Q 002362 810 ---DCENCEKLPP-------LGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWI------------IMP 867 (930)
Q Consensus 810 ---~~~~~~~l~~-------l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~------------~lp 867 (930)
+|...+..|. +..+++|+.|+|++ .+...+ +.. ....+++|+.|.+++| .+|
T Consensus 408 ~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~--~~~--l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 481 (594)
T 2p1m_B 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKV--FEY--IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD 481 (594)
T ss_dssp STTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHH--HHH--HHHHCTTCCEEEEESCCSSHHHHHHHHHHCT
T ss_pred cCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHH--HHH--HHHhchhccEeeccCCCCcHHHHHHHHhcCC
Confidence 3433333322 45678888888864 221100 000 0013788999999887 379
Q ss_pred ccceeeeccCCccCC-CCCCCCCCCCccEEEEecCchh
Q 002362 868 RLSSLTFDSCPKLKA-LPDHFHQTTTLKEFNIGWNCGL 904 (930)
Q Consensus 868 ~L~~L~l~~c~~L~~-lp~~l~~l~~L~~L~l~~nc~~ 904 (930)
+|+.|+|++|+.... ++..+..+++|++|++++ |+.
T Consensus 482 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~-~~~ 518 (594)
T 2p1m_B 482 SLRKLEIRDCPFGDKALLANASKLETMRSLWMSS-CSV 518 (594)
T ss_dssp TCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEES-SCC
T ss_pred CcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeC-CCC
Confidence 999999999975211 223445688999999999 654
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=2.7e-15 Score=159.22 Aligned_cols=199 Identities=20% Similarity=0.145 Sum_probs=137.2
Q ss_pred hhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccccc-ccccccCCcccEEeccCCCCCcccccccc
Q 002362 578 FRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKL-PDTLCELYNLQKLDISCCCKLKELPQGIG 656 (930)
Q Consensus 578 ~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~ 656 (930)
+.++++++.+++++ . .+..+|..+. .+|++|+|++|.++.+ |..+..+++|++|++++|. +..+|.. .
T Consensus 6 ~~~l~~l~~l~~~~---~----~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~ 74 (290)
T 1p9a_G 6 VSKVASHLEVNCDK---R----NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-G 74 (290)
T ss_dssp EECSTTCCEEECTT---S----CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-S
T ss_pred ccccCCccEEECCC---C----CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-C
Confidence 56788899999984 3 5677887765 6899999999998877 4578899999999999988 7777664 7
Q ss_pred ccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhc
Q 002362 657 KLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRL 736 (930)
Q Consensus 657 ~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~ 736 (930)
.+++|++|++++| .+..+|..++.+++|++|++..+.... ..+.
T Consensus 75 ~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~----l~~~------------------------------- 118 (290)
T 1p9a_G 75 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTS----LPLG------------------------------- 118 (290)
T ss_dssp CCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCC----CCSS-------------------------------
T ss_pred CCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCcCcc----cCHH-------------------------------
Confidence 8899999999988 566788878888888888765443221 0011
Q ss_pred cccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCc-ccccccCccEEEeeCCCCCC
Q 002362 737 ELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPP-WMMSLTNLRSLDLDDCENCE 815 (930)
Q Consensus 737 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~L~~~~~~~ 815 (930)
.+..+++|+.|+|++|.+... ....+..+++|+.|++++|.+.. +|. .+..+++|+.|+|++|.+..
T Consensus 119 ~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 119 ALRGLGELQELYLKGNELKTL-----------PPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYT 186 (290)
T ss_dssp TTTTCTTCCEEECTTSCCCCC-----------CTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCCC
T ss_pred HHcCCCCCCEEECCCCCCCcc-----------ChhhcccccCCCEEECCCCcCCc-cCHHHhcCcCCCCEEECCCCcCCc
Confidence 244556666666666665542 12234556677777777777666 443 34567777777777776553
Q ss_pred CCCCCCCCCCcceeeeccCc
Q 002362 816 KLPPLGKLPSLEKLSISFMC 835 (930)
Q Consensus 816 ~l~~l~~l~~L~~L~L~~~~ 835 (930)
..+.+..+++|+.|+|.+++
T Consensus 187 ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCC
T ss_pred cChhhcccccCCeEEeCCCC
Confidence 33336666677777776543
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=1.4e-15 Score=160.78 Aligned_cols=206 Identities=22% Similarity=0.195 Sum_probs=150.2
Q ss_pred CCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccC-cccccCCCCCeeeccCCcccccc-c
Q 002362 552 KRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIP-RNIERLVHLRYLNLSNQSIRKLP-D 629 (930)
Q Consensus 552 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~lp-~ 629 (930)
++|++|.++++.+... .+..|.++++|++|++++| .+..++ ..++++++|++|+|++|.++.++ .
T Consensus 28 ~~l~~L~ls~n~l~~~------~~~~~~~l~~L~~L~l~~n-------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHL------GSYSFFSFPELQVLDLSRC-------EIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp TTCCEEECTTCCCCEE------CTTTTTTCTTCSEEECTTC-------CCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCccEEECCCCccccc------CHhHhccccCCcEEECCCC-------cCCccCHHHccCCcCCCEEECCCCccCccChh
Confidence 5799999999975432 2335788999999999965 345554 47899999999999999999876 5
Q ss_pred ccccCCcccEEeccCCCCCccccc-cccccCCcceEeecCccccc-ccCCcCCCCCCCCcCCceEeCCCCCcCCCccccc
Q 002362 630 TLCELYNLQKLDISCCCKLKELPQ-GIGKLINMRHLLNYGTISLR-YMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRL 707 (930)
Q Consensus 630 ~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l 707 (930)
.+.++++|++|++++|. +..++. .+..+++|++|++++|.... .+|..++.+++|++|++..+.... .....+
T Consensus 95 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~ 169 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS----IYCTDL 169 (276)
T ss_dssp TTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE----ECGGGG
T ss_pred hhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc----CCHHHh
Confidence 78999999999999998 555544 68999999999999985433 367888888888888865443221 011122
Q ss_pred ccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCC-eeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEee
Q 002362 708 ESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLS-CLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGS 786 (930)
Q Consensus 708 ~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 786 (930)
..+.+| +.|. .|++++|.+.. ++.......+|+.|++++
T Consensus 170 ~~l~~L----------------------------~~l~l~L~ls~n~l~~------------~~~~~~~~~~L~~L~L~~ 209 (276)
T 2z62_A 170 RVLHQM----------------------------PLLNLSLDLSLNPMNF------------IQPGAFKEIRLKELALDT 209 (276)
T ss_dssp HHHHTC----------------------------TTCCEEEECCSSCCCE------------ECTTSSCSCCEEEEECCS
T ss_pred hhhhhc----------------------------cccceeeecCCCcccc------------cCccccCCCcccEEECCC
Confidence 222222 2222 67777776654 222333445899999999
Q ss_pred ccCCCCCCcc-cccccCccEEEeeCCCCCCC
Q 002362 787 YRGKTVFPPW-MMSLTNLRSLDLDDCENCEK 816 (930)
Q Consensus 787 ~~~~~~~p~~-~~~l~~L~~L~L~~~~~~~~ 816 (930)
|.+.. +|.+ +..+++|+.|+|++|.+..+
T Consensus 210 n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 210 NQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp SCCSC-CCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred Cceee-cCHhHhcccccccEEEccCCccccc
Confidence 99888 5554 57899999999999976543
No 87
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=1.2e-17 Score=197.67 Aligned_cols=327 Identities=14% Similarity=0.079 Sum_probs=183.3
Q ss_pred cCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcccc--
Q 002362 549 CGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRK-- 626 (930)
Q Consensus 549 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-- 626 (930)
..+++|++|.+.++... +..+..+...+++|++|+|++|... .-..++..+.++++|++|+|++|.++.
T Consensus 102 ~~~~~L~~L~L~~~~~~-----~~~~~~l~~~~~~L~~L~L~~~~~~----~~~~l~~~~~~~~~L~~L~L~~~~i~~~~ 172 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVT-----DDCLELIAKSFKNFKVLVLSSCEGF----STDGLAAIAATCRNLKELDLRESDVDDVS 172 (594)
T ss_dssp HHCTTCCEEEEESCBCC-----HHHHHHHHHHCTTCCEEEEESCEEE----EHHHHHHHHHHCTTCCEEECTTCEEECCC
T ss_pred HhCCCCCeEEeeCcEEc-----HHHHHHHHHhCCCCcEEeCCCcCCC----CHHHHHHHHHhCCCCCEEeCcCCccCCcc
Confidence 46789999999988632 2334444457999999999977432 112255556689999999999998663
Q ss_pred ---cccccccCCcccEEeccCCC-CC--ccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCC--
Q 002362 627 ---LPDTLCELYNLQKLDISCCC-KL--KELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGG-- 698 (930)
Q Consensus 627 ---lp~~i~~L~~L~~L~l~~~~-~~--~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~-- 698 (930)
++.....+++|++|++++|. .+ ..++..+..+++|++|++++|.....+|..++.+++|+.|++..+...-.
T Consensus 173 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 252 (594)
T 2p1m_B 173 GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPD 252 (594)
T ss_dssp GGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHH
T ss_pred hHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchh
Confidence 44444578899999999986 11 22333345679999999999966667888888899999987543321000
Q ss_pred -cCCCcccccccc------------------------cCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeC
Q 002362 699 -IDGRKACRLESL------------------------RSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNK 753 (930)
Q Consensus 699 -~~~~~~~~l~~L------------------------~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 753 (930)
+. .+...+..+ ++|+.|++.++.. . .......+..+++|+.|+++.|
T Consensus 253 ~~~-~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l----~--~~~l~~~~~~~~~L~~L~l~~~- 324 (594)
T 2p1m_B 253 VYS-GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV----Q--SYDLVKLLCQCPKLQRLWVLDY- 324 (594)
T ss_dssp HHH-HHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCC----C--HHHHHHHHTTCTTCCEEEEEGG-
T ss_pred hHH-HHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCC----C--HHHHHHHHhcCCCcCEEeCcCc-
Confidence 00 000112222 3333333322220 0 0111112334455555555543
Q ss_pred CCCCCcCCCccchHHHhhcCCCCCCcceEEEeec---------cCCCCCCccc-ccccCccEEEeeCCCCCCCC-CCCC-
Q 002362 754 EEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSY---------RGKTVFPPWM-MSLTNLRSLDLDDCENCEKL-PPLG- 821 (930)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~---------~~~~~~p~~~-~~l~~L~~L~L~~~~~~~~l-~~l~- 821 (930)
.. ...+......+++|++|++.++ .++......+ ..+++|+.|.+..+.+.... ..+.
T Consensus 325 ~~----------~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~ 394 (594)
T 2p1m_B 325 IE----------DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIAR 394 (594)
T ss_dssp GH----------HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHH
T ss_pred cC----------HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHh
Confidence 11 0111112223455666666332 1110000011 13566666655544433211 1122
Q ss_pred CCCCcceeeec-----cCcCceEeCCccccCcccccCccccceeeccc-----------cccccceeeeccCCccCC--C
Q 002362 822 KLPSLEKLSIS-----FMCSVKRVDNEILGIEITIAFPKLKSLTISWI-----------IMPRLSSLTFDSCPKLKA--L 883 (930)
Q Consensus 822 ~l~~L~~L~L~-----~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~-----------~lp~L~~L~l~~c~~L~~--l 883 (930)
.+|+|+.|+|+ +|..++..+....-......+++|+.|.+++. .+++|+.|++++|. +.. +
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~ 473 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGM 473 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHH
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCC-CcHHHH
Confidence 47788888887 34444322110000000126789999999765 28899999999985 432 1
Q ss_pred CCCCCCCCCccEEEEecCchh
Q 002362 884 PDHFHQTTTLKEFNIGWNCGL 904 (930)
Q Consensus 884 p~~l~~l~~L~~L~l~~nc~~ 904 (930)
+.....+++|++|++++ |+.
T Consensus 474 ~~l~~~~~~L~~L~L~~-n~~ 493 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRD-CPF 493 (594)
T ss_dssp HHHHHHCTTCCEEEEES-CSC
T ss_pred HHHHhcCCCcCEEECcC-CCC
Confidence 11124589999999999 553
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=4.6e-15 Score=162.39 Aligned_cols=230 Identities=17% Similarity=0.113 Sum_probs=137.8
Q ss_pred CCcccCcccccCCCCCeeeccCCccccccc-ccccCCcccEEeccCCCCCccccc-cccccCCcceEeecCcccccccC-
Q 002362 600 PLTRIPRNIERLVHLRYLNLSNQSIRKLPD-TLCELYNLQKLDISCCCKLKELPQ-GIGKLINMRHLLNYGTISLRYMP- 676 (930)
Q Consensus 600 ~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~p- 676 (930)
.++.+|..+. .++++|+|++|.|+.+|. .|.+|++|++|+|++|...+.+|. .|.++++|.++...+++.+..+|
T Consensus 20 ~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 20 KVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp TCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence 5677887663 578999999999998886 578899999999999886666765 46788888776555444566664
Q ss_pred CcCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEee-CCC
Q 002362 677 VGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFN-KEE 755 (930)
Q Consensus 677 ~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~-~~~ 755 (930)
..++.+++|++|++..+...... ...+ ....++..|++..+ .+.
T Consensus 98 ~~f~~l~~L~~L~l~~n~l~~~~----~~~~-------------------------------~~~~~l~~l~l~~~~~i~ 142 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNTGIKHLP----DVHK-------------------------------IHSLQKVLLDIQDNINIH 142 (350)
T ss_dssp TSBCCCTTCCEEEEEEECCSSCC----CCTT-------------------------------CCBSSCEEEEEESCTTCC
T ss_pred hhhhhccccccccccccccccCC----chhh-------------------------------cccchhhhhhhccccccc
Confidence 45677888888887766443210 0011 11122233333321 111
Q ss_pred CCCcCCCccchHHHhhcCCC-CCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCC--CCCCCCcceeeec
Q 002362 756 GDGQRRKNEDDQLLLEFLQP-PPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP--LGKLPSLEKLSIS 832 (930)
Q Consensus 756 ~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~ 832 (930)
.. -...+.. ...++.|++++|.+.. +|.......+|+.|++.++...+.+|. ++.+++|+.|+|+
T Consensus 143 ~l-----------~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs 210 (350)
T 4ay9_X 143 TI-----------ERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210 (350)
T ss_dssp EE-----------CTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECT
T ss_pred cc-----------cccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcC
Confidence 10 0011122 2346667777776665 555555556677777776555555554 6677777777777
Q ss_pred cCcCceEeCCccccCcccccCccccceeeccccccccceeeeccCCccCCCCCCCCCCCCccEEEEecC
Q 002362 833 FMCSVKRVDNEILGIEITIAFPKLKSLTISWIIMPRLSSLTFDSCPKLKALPDHFHQTTTLKEFNIGWN 901 (930)
Q Consensus 833 ~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L~l~~n 901 (930)
++. ++.++.. .+.+|+.|.+.+|..++.+|. +..+++|+.+++.++
T Consensus 211 ~N~-l~~lp~~---------------------~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 211 RTR-IHSLPSY---------------------GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp TSC-CCCCCSS---------------------SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred CCC-cCccChh---------------------hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 542 2222211 134555566666666777763 666777777777653
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=2.3e-16 Score=172.10 Aligned_cols=203 Identities=17% Similarity=0.152 Sum_probs=98.7
Q ss_pred CcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcccc--cccccccCCcccEEeccCCCCCccccccccccC
Q 002362 582 TSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRK--LPDTLCELYNLQKLDISCCCKLKELPQGIGKLI 659 (930)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~ 659 (930)
+.+++|++++|. +...+..+..+++|++|+|++|.+.. +|..+..+++|++|++++|......|..+..++
T Consensus 70 ~~l~~L~l~~n~-------l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~ 142 (336)
T 2ast_B 70 QGVIAFRCPRSF-------MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 142 (336)
T ss_dssp TTCSEEECTTCE-------ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT
T ss_pred ccceEEEcCCcc-------ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC
Confidence 556666666432 22233334556666666666666552 555566666666666666653335555566666
Q ss_pred CcceEeecCccccc--ccCCcCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhcc
Q 002362 660 NMRHLLNYGTISLR--YMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLE 737 (930)
Q Consensus 660 ~L~~L~l~~~~~~~--~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~ 737 (930)
+|++|++++|..+. .+|..++.+++|++|++. ++..+. . ......
T Consensus 143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~----------------------------~~~~l~---~--~~~~~~ 189 (336)
T 2ast_B 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS----------------------------WCFDFT---E--KHVQVA 189 (336)
T ss_dssp TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC----------------------------CCTTCC---H--HHHHHH
T ss_pred CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC----------------------------CCCCcC---h--HHHHHH
Confidence 66666666653222 123323333334333322 210000 0 001112
Q ss_pred ccCCC-CCCeeEEEeeC--CCCCCcCCCccchHHHhhcCCCCCCcceEEEeecc-CCCCCCcccccccCccEEEeeCCCC
Q 002362 738 LDKMK-NLSCLKLLFNK--EEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYR-GKTVFPPWMMSLTNLRSLDLDDCEN 813 (930)
Q Consensus 738 l~~~~-~L~~L~L~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~L~~~~~ 813 (930)
+..++ +|+.|++++|. ++. ..++..+..+++|++|++++|. ++...+..+..+++|+.|+|++|..
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~----------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQK----------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCH----------HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred HHhcccCCCEEEeCCCcccCCH----------HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 33455 66666666552 211 1233334445566666666665 3333444555566666666666641
Q ss_pred CC--CCCCCCCCCCcceeeeccC
Q 002362 814 CE--KLPPLGKLPSLEKLSISFM 834 (930)
Q Consensus 814 ~~--~l~~l~~l~~L~~L~L~~~ 834 (930)
.. .+..++.+|+|+.|++++|
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCHHHHHHHhcCCCCCEEeccCc
Confidence 11 1112555666666666544
No 90
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.58 E-value=2.8e-13 Score=149.04 Aligned_cols=291 Identities=12% Similarity=0.116 Sum_probs=173.3
Q ss_pred cCCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCC-----ccHH
Q 002362 168 DEEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSET-----FEEF 242 (930)
Q Consensus 168 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~ 242 (930)
.+..|+||+++++.+.+ +. . +++.|+|++|+|||||++.+++. ... ..+|+.+... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~-------~--~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR-------A--PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC-------S--SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hc-------C--CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHH
Confidence 45679999999999999 63 1 59999999999999999999874 222 3678887642 3445
Q ss_pred HHHHHHHHHhcC-------------C-------CC---------CCccHHHHHHHHHHHhcCceEEEEEeCccccCc---
Q 002362 243 RVAKAIVEALDG-------------H-------ES---------RLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNY--- 290 (930)
Q Consensus 243 ~~~~~i~~~l~~-------------~-------~~---------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--- 290 (930)
.....+.+.+.. . .. ......++...+.+... ++++|||||++..+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 555554443310 0 00 12234455555543322 489999999976432
Q ss_pred cChhhhhhhhccCCCCcEEEEEcCChHHHhhh-----------CC-cceEeCCCCChHHHHHHHHHHHcC-CCCchhhHH
Q 002362 291 MKWEPFFHCLKNGLHRSKILVTTRKKSVASMM-----------GS-TNIISIKELTEEECRLLFNKIAFS-DRPIEEREK 357 (930)
Q Consensus 291 ~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~ 357 (930)
..|..+...+.....+.++|+|++.......+ +. ...+++.+|+.+|+.+++...+.. ..... .
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~ 231 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK---D 231 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC---C
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC---c
Confidence 23433333333323467899999986532211 11 257899999999999999875421 11111 1
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHhhhcCCCCHHHHHHHHhcccccchhhhhhHHHHHH-Hhhh--cCChhHHHHHhHhcC
Q 002362 358 LEQIGRKIANKCKGLPLAAKIIGSLMRSKETEEEWRRILNSGLWKVEEIEKDILSSLL-LSYN--DLPSKVKKCFSYCAI 434 (930)
Q Consensus 358 l~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~-lsy~--~L~~~~k~cf~~~s~ 434 (930)
...|++.|+|+|+++..++..+....+...|..-.- ......+...+. +.+. .||+..+..+..++.
T Consensus 232 ----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 232 ----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTL------EYAKKLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp ----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHH------HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred ----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHH------HHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 267999999999999999877643323333322110 000011111122 2221 678889999999988
Q ss_pred CCCCcccChHHHHHHHH-HhCCcCCCcchhHHHHHHHHHHHHHHccCCcccccCCCCceeeEE-ecHHHHHHH
Q 002362 435 FPKDYNIEKDRLITLWM-AQGYLDTEQDEEMESKGEEYFGILASRSFFQEFTKSYDNCIMQCK-MHDMVHDFG 505 (930)
Q Consensus 435 fp~~~~i~~~~Li~~w~-a~g~i~~~~~~~~e~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~-mh~lv~~~a 505 (930)
+. +...+....- ..|. . ........+++.|++.+++.... + .|+ .|++++++.
T Consensus 302 ---g~--~~~~l~~~~~~~~g~--~----~~~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 ---CG--KWSDVKRALELEEGI--E----ISDSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLAF 356 (357)
T ss_dssp ---CB--CHHHHHHHHHHHHCS--C----CCHHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHHT
T ss_pred ---CC--CHHHHHHHHHHhcCC--C----CCHHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHhh
Confidence 22 3344332110 1121 0 01234667999999999997542 1 245 478888753
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=1.2e-14 Score=156.32 Aligned_cols=229 Identities=15% Similarity=0.034 Sum_probs=152.7
Q ss_pred CCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCccc--ccCCCCCeeeccCCccccc-
Q 002362 551 VKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNI--ERLVHLRYLNLSNQSIRKL- 627 (930)
Q Consensus 551 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i--~~L~~Lr~L~L~~~~i~~l- 627 (930)
...++.+.+........ .... ... +..++.|+.|++++|... ...|..+ +.+++|++|+|++|.+...
T Consensus 63 ~~~l~~l~l~~~~~~~~-~~~~-~~~-~~~~~~L~~L~l~~n~l~------~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~ 133 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQ-LLVG-ALR-VLAYSRLKELTLEDLKIT------GTMPPLPLEATGLALSSLRLRNVSWATGR 133 (310)
T ss_dssp SCCCCEEEECSCCCBHH-HHHH-HHH-HHHHSCCCEEEEESCCCB------SCCCCCSSSCCCBCCSSCEEESCCCSSTT
T ss_pred hcceeEEEEeCCcCCHH-HHHH-HHH-hcccCceeEEEeeCCEec------cchhhhhhhccCCCCCEEEeecccccchh
Confidence 34567777776653211 1111 111 234467999999966433 3456666 8899999999999998852
Q ss_pred c----cccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccc--cC--CcCCCCCCCCcCCceEeCCCCCc
Q 002362 628 P----DTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRY--MP--VGIGRLTSLRTLDEFYVSGGGGI 699 (930)
Q Consensus 628 p----~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~--~p--~~i~~l~~L~~L~~~~~~~~~~~ 699 (930)
| ..+..+++|++|++++|......|..+..+++|++|++++|..... ++ ..++.+++|++|++..+...
T Consensus 134 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--- 210 (310)
T 4glp_A 134 SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME--- 210 (310)
T ss_dssp SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC---
T ss_pred hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC---
Confidence 2 3456799999999999985445557788999999999999853321 22 22356667777665433211
Q ss_pred CCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcC---CCC
Q 002362 700 DGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFL---QPP 776 (930)
Q Consensus 700 ~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l---~~~ 776 (930)
.........+..+++|+.|+|++|.+.+. .+..+ ..+
T Consensus 211 -----------------------------~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~-----------~p~~~~~~~~~ 250 (310)
T 4glp_A 211 -----------------------------TPTGVCAALAAAGVQPHSLDLSHNSLRAT-----------VNPSAPRCMWS 250 (310)
T ss_dssp -----------------------------CHHHHHHHHHHHTCCCSSEECTTSCCCCC-----------CCSCCSSCCCC
T ss_pred -----------------------------chHHHHHHHHhcCCCCCEEECCCCCCCcc-----------chhhHHhccCc
Confidence 01111111234567888899988887763 12223 334
Q ss_pred CCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCCCCCCCCcceeeeccCc
Q 002362 777 PNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPPLGKLPSLEKLSISFMC 835 (930)
Q Consensus 777 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 835 (930)
++|++|++++|.+.. +|.++. ++|+.|+|++|.+.+ +|.+..+++|+.|+|++++
T Consensus 251 ~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 251 SALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNR-APQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp TTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCS-CCCTTSCCCCSCEECSSTT
T ss_pred CcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCC-CchhhhCCCccEEECcCCC
Confidence 799999999999886 888774 799999999997664 4667888999999998654
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=2.3e-15 Score=158.43 Aligned_cols=206 Identities=21% Similarity=0.255 Sum_probs=127.9
Q ss_pred cCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcccccc
Q 002362 549 CGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLP 628 (930)
Q Consensus 549 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp 628 (930)
..+++|+.|.+.++.+... + .+..+++|++|++++|. +..+ ..++.+++|++|++++|.++.+|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~-------~-~l~~l~~L~~L~l~~n~-------l~~~-~~l~~l~~L~~L~L~~n~l~~~~ 101 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV-------Q-GIQYLPNVRYLALGGNK-------LHDI-SALKELTNLTYLILTGNQLQSLP 101 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC-------T-TGGGCTTCCEEECTTSC-------CCCC-GGGTTCTTCCEEECTTSCCCCCC
T ss_pred ccccceeeeeeCCCCcccc-------c-ccccCCCCcEEECCCCC-------CCCc-hhhcCCCCCCEEECCCCccCccC
Confidence 3456777777777654322 1 15667777888887543 3333 36677777888888887777666
Q ss_pred cc-cccCCcccEEeccCCCCCccccc-cccccCCcceEeecCcccccccCCc-CCCCCCCCcCCceEeCCCCCcCCCccc
Q 002362 629 DT-LCELYNLQKLDISCCCKLKELPQ-GIGKLINMRHLLNYGTISLRYMPVG-IGRLTSLRTLDEFYVSGGGGIDGRKAC 705 (930)
Q Consensus 629 ~~-i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~ 705 (930)
.. +.++++|++|++++|. +..+|. .+..+++|++|++++| .+..+|.. ++.+++|++|++..+...
T Consensus 102 ~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~--------- 170 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQ--------- 170 (272)
T ss_dssp TTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC---------
T ss_pred hhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcC---------
Confidence 54 5777778888887777 444444 3577777888877777 34444433 456666666654433211
Q ss_pred ccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEe
Q 002362 706 RLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIG 785 (930)
Q Consensus 706 ~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 785 (930)
...+. .+..+++|+.|++++|.+.+. .+..+..+++|+.|+++
T Consensus 171 -------------------~~~~~-------~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 171 -------------------SLPEG-------VFDKLTQLKDLRLYQNQLKSV-----------PDGVFDRLTSLQYIWLH 213 (272)
T ss_dssp -------------------CCCTT-------TTTTCTTCCEEECCSSCCSCC-----------CTTTTTTCTTCCEEECC
T ss_pred -------------------ccCHH-------HhcCCccCCEEECCCCcCCcc-----------CHHHHhCCcCCCEEEcc
Confidence 11111 245567777777777776652 22345667788888888
Q ss_pred eccCCCCCCcccccccCccEEEeeCCCCCCCCCC-CCCCCC
Q 002362 786 SYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP-LGKLPS 825 (930)
Q Consensus 786 ~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~ 825 (930)
+|.+.. .+++|+.|+++.|.+.+.+|. ++.++.
T Consensus 214 ~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 214 DNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp SSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 876554 345677777777777766665 555544
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.57 E-value=5.9e-15 Score=158.20 Aligned_cols=192 Identities=18% Similarity=0.181 Sum_probs=123.8
Q ss_pred CCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccccccc
Q 002362 550 GVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPD 629 (930)
Q Consensus 550 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~ 629 (930)
.+++|++|.+.++.+... + .+..+++|++|+|++| .+..+|. +..+++|++|+|++|.++.+|
T Consensus 39 ~l~~L~~L~l~~~~i~~l-------~-~~~~l~~L~~L~L~~n-------~i~~~~~-~~~l~~L~~L~L~~n~l~~~~- 101 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI-------E-GVQYLNNLIGLELKDN-------QITDLAP-LKNLTKITELELSGNPLKNVS- 101 (308)
T ss_dssp HHHTCCEEECTTSCCCCC-------T-TGGGCTTCCEEECCSS-------CCCCCGG-GTTCCSCCEEECCSCCCSCCG-
T ss_pred HcCCcCEEEeeCCCccCc-------h-hhhccCCCCEEEccCC-------cCCCChh-HccCCCCCEEEccCCcCCCch-
Confidence 467788888877764322 1 2667888888888854 4455555 788888888888888888776
Q ss_pred ccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCccccccc
Q 002362 630 TLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLES 709 (930)
Q Consensus 630 ~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~ 709 (930)
.+..+++|++|++++|. +..+|. +..+++|++|++++| .+..++. ++.+++|+.|++..+.... ..
T Consensus 102 ~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~------~~---- 167 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNAQVSD------LT---- 167 (308)
T ss_dssp GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSCCCC------CG----
T ss_pred hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCCcCCC------Ch----
Confidence 57888888888888887 666665 788888888888887 4455554 6777777777654332211 00
Q ss_pred ccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccC
Q 002362 710 LRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRG 789 (930)
Q Consensus 710 L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 789 (930)
.+..+++|+.|++++|.+... . .+..+++|++|++++|.+
T Consensus 168 ---------------------------~l~~l~~L~~L~l~~n~l~~~------------~-~l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 168 ---------------------------PLANLSKLTTLKADDNKISDI------------S-PLASLPNLIEVHLKNNQI 207 (308)
T ss_dssp ---------------------------GGTTCTTCCEEECCSSCCCCC------------G-GGGGCTTCCEEECTTSCC
T ss_pred ---------------------------hhcCCCCCCEEECCCCccCcC------------h-hhcCCCCCCEEEccCCcc
Confidence 123345556666665555431 1 134455666666666666
Q ss_pred CCCCCcccccccCccEEEeeCCCCC
Q 002362 790 KTVFPPWMMSLTNLRSLDLDDCENC 814 (930)
Q Consensus 790 ~~~~p~~~~~l~~L~~L~L~~~~~~ 814 (930)
.+ ++ .+..+++|+.|+|++|.+.
T Consensus 208 ~~-~~-~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 208 SD-VS-PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CB-CG-GGTTCTTCCEEEEEEEEEE
T ss_pred Cc-cc-cccCCCCCCEEEccCCeee
Confidence 55 44 2556666666666666543
No 94
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.56 E-value=3.2e-14 Score=149.50 Aligned_cols=197 Identities=22% Similarity=0.227 Sum_probs=143.5
Q ss_pred CCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccc-cccccCCcceEeecCcccccccCCc-CCCCCCCCcCC
Q 002362 612 VHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQ-GIGKLINMRHLLNYGTISLRYMPVG-IGRLTSLRTLD 689 (930)
Q Consensus 612 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~ 689 (930)
..+++++++++.++.+|..+. .+|++|++++|. +..+|. .+..+++|++|++++| .+..+|.. ++.+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEE
Confidence 458899999999999998765 789999999998 666654 7899999999999998 45566655 46777787776
Q ss_pred ceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHH
Q 002362 690 EFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLL 769 (930)
Q Consensus 690 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 769 (930)
+..+... ...+. .+..+++|+.|++++|.+... .
T Consensus 92 l~~n~l~----------------------------~~~~~-------~~~~l~~L~~L~l~~n~l~~~-----------~ 125 (270)
T 2o6q_A 92 VTDNKLQ----------------------------ALPIG-------VFDQLVNLAELRLDRNQLKSL-----------P 125 (270)
T ss_dssp CCSSCCC----------------------------CCCTT-------TTTTCSSCCEEECCSSCCCCC-----------C
T ss_pred CCCCcCC----------------------------cCCHh-------HcccccCCCEEECCCCccCee-----------C
Confidence 5432211 11111 355678999999999988763 2
Q ss_pred hhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCC-CCCCCCcceeeeccCcCceEeCCccccCc
Q 002362 770 LEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP-LGKLPSLEKLSISFMCSVKRVDNEILGIE 848 (930)
Q Consensus 770 ~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 848 (930)
+..+..+++|++|++++|.+....+..+..+++|+.|+|++|.+....+. +..+++|+.|+|++|. ++.++...+.
T Consensus 126 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-- 202 (270)
T 2o6q_A 126 PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFD-- 202 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTT--
T ss_pred HHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc-CCcCCHHHhc--
Confidence 34567889999999999999883344578999999999999987765544 8899999999999763 3333332221
Q ss_pred ccccCccccceeeccc
Q 002362 849 ITIAFPKLKSLTISWI 864 (930)
Q Consensus 849 ~~~~f~~L~~L~l~~~ 864 (930)
.+++|+.|.+++|
T Consensus 203 ---~l~~L~~L~l~~N 215 (270)
T 2o6q_A 203 ---SLEKLKMLQLQEN 215 (270)
T ss_dssp ---TCTTCCEEECCSS
T ss_pred ---cccCCCEEEecCC
Confidence 3444555544444
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.56 E-value=1.3e-16 Score=177.68 Aligned_cols=249 Identities=16% Similarity=0.088 Sum_probs=149.7
Q ss_pred ccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCc-ccCccc-------ccCCCCC
Q 002362 544 FPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLT-RIPRNI-------ERLVHLR 615 (930)
Q Consensus 544 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~-~lp~~i-------~~L~~Lr 615 (930)
+...+..+++|++|.+.++.+... ....+...+..+++|++|+|++|... .+. .+|..+ ..+++|+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~--~~~~l~~~l~~~~~L~~L~Ls~~~~~----~l~~~~~~~~~~l~~~l~~~~~L~ 97 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTE--AARWLSENIASKKDLEIAEFSDIFTG----RVKDEIPEALRLLLQALLKCPKLH 97 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHH--HHHHHHHTTTTCTTCCEEECCSCCTT----SCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHhcCCCccEEECCCCCCCHH--HHHHHHHHHHhCCCccEEeCcccccC----ccccchhHHHHHHHHHHhhCCccc
Confidence 345566778888888888864321 11223344677888999999865433 222 234433 6788899
Q ss_pred eeeccCCcccc-----cccccccCCcccEEeccCCCCCc----ccccccccc---------CCcceEeecCcccc-cccC
Q 002362 616 YLNLSNQSIRK-----LPDTLCELYNLQKLDISCCCKLK----ELPQGIGKL---------INMRHLLNYGTISL-RYMP 676 (930)
Q Consensus 616 ~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~~~----~lp~~i~~L---------~~L~~L~l~~~~~~-~~~p 676 (930)
+|+|++|.+.. +|..+..+++|++|++++|.... .++..+..+ ++|++|++++|... ..+|
T Consensus 98 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 177 (386)
T 2ca6_A 98 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177 (386)
T ss_dssp EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred EEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence 99999888875 77788888889999998887422 233444445 78888888887432 2233
Q ss_pred ---CcCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeC
Q 002362 677 ---VGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNK 753 (930)
Q Consensus 677 ---~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 753 (930)
..+..+++|++|++..+.... . .........+..+++|+.|+|++|.
T Consensus 178 ~l~~~l~~~~~L~~L~L~~n~l~~-------~-----------------------g~~~l~~~~l~~~~~L~~L~Ls~n~ 227 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQNGIRP-------E-----------------------GIEHLLLEGLAYCQELKVLDLQDNT 227 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCCH-------H-----------------------HHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred HHHHHHHhCCCcCEEECcCCCCCH-------h-----------------------HHHHHHHHHhhcCCCccEEECcCCC
Confidence 234455566655543332110 0 0000011134556677777777776
Q ss_pred CCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCC----CCcccc--cccCccEEEeeCCCCCC----CCCC-C-C
Q 002362 754 EEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTV----FPPWMM--SLTNLRSLDLDDCENCE----KLPP-L-G 821 (930)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~p~~~~--~l~~L~~L~L~~~~~~~----~l~~-l-~ 821 (930)
++.. ....++..+..+++|++|+|++|.+... +|.++. .+++|+.|+|++|.+.. .+|. + .
T Consensus 228 l~~~-------g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~ 300 (386)
T 2ca6_A 228 FTHL-------GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 300 (386)
T ss_dssp CHHH-------HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH
T ss_pred CCcH-------HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHh
Confidence 5310 1122455566677777777777776542 244553 36777777777777665 2443 3 5
Q ss_pred CCCCcceeeeccCc
Q 002362 822 KLPSLEKLSISFMC 835 (930)
Q Consensus 822 ~l~~L~~L~L~~~~ 835 (930)
++|+|+.|+|++|.
T Consensus 301 ~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 301 KMPDLLFLELNGNR 314 (386)
T ss_dssp HCTTCCEEECTTSB
T ss_pred cCCCceEEEccCCc
Confidence 56777777777553
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=5.5e-16 Score=169.16 Aligned_cols=239 Identities=18% Similarity=0.149 Sum_probs=149.8
Q ss_pred CcceEEEcCCcccccCCCCCcccCcccccC--CCCCeeeccCCcccccccccccCCcccEEeccCCCCCcc-cccccccc
Q 002362 582 TSLRVLEFGDWARSLQLGPLTRIPRNIERL--VHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKE-LPQGIGKL 658 (930)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L--~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~-lp~~i~~L 658 (930)
..++.|+++++. +. |..++.+ .++++|++++|.+...+..+..+++|++|++++|..... +|..+..+
T Consensus 47 ~~~~~l~l~~~~-------~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~ 117 (336)
T 2ast_B 47 SLWQTLDLTGKN-------LH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC 117 (336)
T ss_dssp TTSSEEECTTCB-------CC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTB
T ss_pred hhheeecccccc-------CC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhC
Confidence 346777777432 22 4455666 778888888888777766677788888888888873333 77777788
Q ss_pred CCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccc
Q 002362 659 INMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLEL 738 (930)
Q Consensus 659 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l 738 (930)
++|++|++++|......|..++.+++|++|++..+.... .......+
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~---------------------------------~~~l~~~~ 164 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS---------------------------------EFALQTLL 164 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC---------------------------------HHHHHHHH
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC---------------------------------HHHHHHHH
Confidence 888888888875444566677778888877754321000 00011134
Q ss_pred cCCCCCCeeEEEee-CCCCCCcCCCccchHHHhhcCCCCC-CcceEEEeecc--CC-CCCCcccccccCccEEEeeCCCC
Q 002362 739 DKMKNLSCLKLLFN-KEEGDGQRRKNEDDQLLLEFLQPPP-NLRKLLIGSYR--GK-TVFPPWMMSLTNLRSLDLDDCEN 813 (930)
Q Consensus 739 ~~~~~L~~L~L~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~--~~-~~~p~~~~~l~~L~~L~L~~~~~ 813 (930)
..+++|+.|++++| .++. ..++..+..++ +|++|++++|. +. ..+|..+..+++|+.|+|++|..
T Consensus 165 ~~~~~L~~L~l~~~~~l~~----------~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTE----------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234 (336)
T ss_dssp HHCTTCCEEECCCCTTCCH----------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred hcCCCCCEEcCCCCCCcCh----------HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence 45677888888877 5542 12344455566 88888888874 32 22466666788888888888873
Q ss_pred -CC-CCCCCCCCCCcceeeeccCcCceEeCCccccCcccccCccccceeeccc-------cc-cccceeeeccC
Q 002362 814 -CE-KLPPLGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWI-------IM-PRLSSLTFDSC 877 (930)
Q Consensus 814 -~~-~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~-------~l-p~L~~L~l~~c 877 (930)
.+ .++.++.+++|+.|+|++|..+. +..+. ....+++|+.|.++++ .+ .+|..|++++|
T Consensus 235 l~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~---~l~~~~~L~~L~l~~~i~~~~~~~l~~~l~~L~l~~n 303 (336)
T 2ast_B 235 LKNDCFQEFFQLNYLQHLSLSRCYDII--PETLL---ELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCS 303 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTCTTCC--GGGGG---GGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEESCC
T ss_pred CCHHHHHHHhCCCCCCEeeCCCCCCCC--HHHHH---HHhcCCCCCEEeccCccCHHHHHHHHhhCcceEEecc
Confidence 32 24457777888888888775321 11110 1125778888888776 12 23666667655
No 97
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.52 E-value=1.8e-14 Score=148.58 Aligned_cols=194 Identities=16% Similarity=0.190 Sum_probs=107.2
Q ss_pred cceEEEcCCcccccCCCCCcccCc-ccccCCCCCeeeccCCc-cccccc-ccccCCcccEEeccC-CCCCcccc-ccccc
Q 002362 583 SLRVLEFGDWARSLQLGPLTRIPR-NIERLVHLRYLNLSNQS-IRKLPD-TLCELYNLQKLDISC-CCKLKELP-QGIGK 657 (930)
Q Consensus 583 ~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~-i~~lp~-~i~~L~~L~~L~l~~-~~~~~~lp-~~i~~ 657 (930)
.|+.|++++| .+..+|. .++++++|++|++++|. ++.+|. .+.++++|++|++++ |. +..+| ..+..
T Consensus 32 ~l~~L~l~~n-------~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~ 103 (239)
T 2xwt_C 32 STQTLKLIET-------HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKE 103 (239)
T ss_dssp TCCEEEEESC-------CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEEC
T ss_pred cccEEEEeCC-------cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCC
Confidence 5667777643 3445544 56677777777777775 776665 567777777777776 44 55555 34667
Q ss_pred cCCcceEeecCcccccccCCcCCCCCCCC---cCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhh
Q 002362 658 LINMRHLLNYGTISLRYMPVGIGRLTSLR---TLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAK 734 (930)
Q Consensus 658 L~~L~~L~l~~~~~~~~~p~~i~~l~~L~---~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~ 734 (930)
+++|++|++++| .+..+|. ++.+++|+ +|++..+. . +..++.
T Consensus 104 l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~---------------------------~-l~~i~~----- 148 (239)
T 2xwt_C 104 LPLLKFLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNP---------------------------Y-MTSIPV----- 148 (239)
T ss_dssp CTTCCEEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCT---------------------------T-CCEECT-----
T ss_pred CCCCCEEeCCCC-CCccccc-cccccccccccEEECCCCc---------------------------c-hhhcCc-----
Confidence 777777777776 3444554 44444444 33322110 0 000010
Q ss_pred hccccCCCCCC-eeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeecc-CCCCCCcccccc-cCccEEEeeCC
Q 002362 735 RLELDKMKNLS-CLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYR-GKTVFPPWMMSL-TNLRSLDLDDC 811 (930)
Q Consensus 735 ~~~l~~~~~L~-~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~p~~~~~l-~~L~~L~L~~~ 811 (930)
..+..+++|+ .|++++|.+.. ++......++|+.|++++|. +....+..+..+ ++|+.|+|++|
T Consensus 149 -~~~~~l~~L~~~L~l~~n~l~~------------i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 149 -NAFQGLCNETLTLKLYNNGFTS------------VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp -TTTTTTBSSEEEEECCSCCCCE------------ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred -ccccchhcceeEEEcCCCCCcc------------cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence 0233455566 66666555442 12111122567777777763 555223445566 67777777776
Q ss_pred CCCCCCCCCCCCCCcceeeeccC
Q 002362 812 ENCEKLPPLGKLPSLEKLSISFM 834 (930)
Q Consensus 812 ~~~~~l~~l~~l~~L~~L~L~~~ 834 (930)
.+.. +|.- .+++|+.|.+.++
T Consensus 216 ~l~~-l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 216 SVTA-LPSK-GLEHLKELIARNT 236 (239)
T ss_dssp CCCC-CCCT-TCTTCSEEECTTC
T ss_pred cccc-CChh-HhccCceeeccCc
Confidence 5543 3332 5666777766654
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=2e-16 Score=176.06 Aligned_cols=244 Identities=16% Similarity=0.114 Sum_probs=163.1
Q ss_pred HHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccc----cccccc-------ccCCcccEEecc
Q 002362 575 ERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIR----KLPDTL-------CELYNLQKLDIS 643 (930)
Q Consensus 575 ~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~----~lp~~i-------~~L~~L~~L~l~ 643 (930)
...+..+++|+.|+|++|... ......++..+..+++|++|+|++|.+. .+|..+ ..+++|++|+++
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~--~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIG--TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEEC--HHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHhcCCCccEEECCCCCCC--HHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 344778899999999976543 0011224556778999999999997655 334443 788999999999
Q ss_pred CCCCCc----cccccccccCCcceEeecCcccccc----cCCcCCCC---------CCCCcCCceEeCCCCCcCCCcccc
Q 002362 644 CCCKLK----ELPQGIGKLINMRHLLNYGTISLRY----MPVGIGRL---------TSLRTLDEFYVSGGGGIDGRKACR 706 (930)
Q Consensus 644 ~~~~~~----~lp~~i~~L~~L~~L~l~~~~~~~~----~p~~i~~l---------~~L~~L~~~~~~~~~~~~~~~~~~ 706 (930)
+|.... .+|..+..+++|++|++++|..... ++..+..+ ++|++|+
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~----------------- 165 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII----------------- 165 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE-----------------
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE-----------------
Confidence 998444 3788889999999999998843222 22222222 4444444
Q ss_pred cccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhh-cCCCCCCcceEEEe
Q 002362 707 LESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLE-FLQPPPNLRKLLIG 785 (930)
Q Consensus 707 l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~ 785 (930)
+.++..... ........+..+++|+.|++++|.+... ....+.. .+..+++|++|+|+
T Consensus 166 -----------L~~n~l~~~---~~~~l~~~l~~~~~L~~L~L~~n~l~~~-------g~~~l~~~~l~~~~~L~~L~Ls 224 (386)
T 2ca6_A 166 -----------CGRNRLENG---SMKEWAKTFQSHRLLHTVKMVQNGIRPE-------GIEHLLLEGLAYCQELKVLDLQ 224 (386)
T ss_dssp -----------CCSSCCTGG---GHHHHHHHHHHCTTCCEEECCSSCCCHH-------HHHHHHHTTGGGCTTCCEEECC
T ss_pred -----------CCCCCCCcH---HHHHHHHHHHhCCCcCEEECcCCCCCHh-------HHHHHHHHHhhcCCCccEEECc
Confidence 333322100 0011112456678999999999987531 1111333 67788999999999
Q ss_pred eccCC----CCCCcccccccCccEEEeeCCCCCCC----CCC-C--CCCCCcceeeeccCcCceE-----eCCccccCcc
Q 002362 786 SYRGK----TVFPPWMMSLTNLRSLDLDDCENCEK----LPP-L--GKLPSLEKLSISFMCSVKR-----VDNEILGIEI 849 (930)
Q Consensus 786 ~~~~~----~~~p~~~~~l~~L~~L~L~~~~~~~~----l~~-l--~~l~~L~~L~L~~~~~l~~-----~~~~~~~~~~ 849 (930)
+|.+. ..+|.++..+++|+.|+|++|.+... ++. + +.+++|+.|+|++|. +.. ++..+.
T Consensus 225 ~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~---- 299 (386)
T 2ca6_A 225 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVID---- 299 (386)
T ss_dssp SSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHH----
T ss_pred CCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHH----
Confidence 99974 33788888999999999999987653 333 4 559999999999775 221 111111
Q ss_pred cccCccccceeeccc
Q 002362 850 TIAFPKLKSLTISWI 864 (930)
Q Consensus 850 ~~~f~~L~~L~l~~~ 864 (930)
..+++|+.|.+++|
T Consensus 300 -~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 300 -EKMPDLLFLELNGN 313 (386)
T ss_dssp -HHCTTCCEEECTTS
T ss_pred -hcCCCceEEEccCC
Confidence 14799999999998
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=8.1e-14 Score=149.76 Aligned_cols=207 Identities=17% Similarity=0.085 Sum_probs=131.1
Q ss_pred CcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccc-cccccc--ccCCcccEEeccCCCCCcccc----cc
Q 002362 582 TSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIR-KLPDTL--CELYNLQKLDISCCCKLKELP----QG 654 (930)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i--~~L~~L~~L~l~~~~~~~~lp----~~ 654 (930)
..++.|.+.++... ...+..++. ...+.+|++|++++|.+. ..|..+ ..+++|++|++++|......| ..
T Consensus 64 ~~l~~l~l~~~~~~--~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 64 LRVRRLTVGAAQVP--AQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp CCCCEEEECSCCCB--HHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred cceeEEEEeCCcCC--HHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 34677777743221 001111222 223467999999999877 456666 889999999999988544433 34
Q ss_pred ccccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhh
Q 002362 655 IGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAK 734 (930)
Q Consensus 655 i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~ 734 (930)
+..+++|++|++++|......|..++.+++|++|++.++.... . .....
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----------------------------~---~~~~~ 189 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLG----------------------------E---RGLMA 189 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCH----------------------------H---HHHHT
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCcc----------------------------c---hhhhH
Confidence 4678899999998885434444566777777777654332110 0 00000
Q ss_pred hccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhh-cCCCCCCcceEEEeeccCCCCCCcccccc---cCccEEEeeC
Q 002362 735 RLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLE-FLQPPPNLRKLLIGSYRGKTVFPPWMMSL---TNLRSLDLDD 810 (930)
Q Consensus 735 ~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~p~~~~~l---~~L~~L~L~~ 810 (930)
...+..+++|+.|++++|.++.. ..... .+..+++|++|++++|.+.+..|..+..+ ++|+.|+|++
T Consensus 190 ~~~~~~l~~L~~L~Ls~N~l~~l---------~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~ 260 (310)
T 4glp_A 190 ALCPHKFPAIQNLALRNTGMETP---------TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF 260 (310)
T ss_dssp TSCTTSSCCCCSCBCCSSCCCCH---------HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred HHhhhcCCCCCEEECCCCCCCch---------HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence 00234567888888888877541 11111 23566889999999998888557766655 6899999998
Q ss_pred CCCCCCCCC-CCCCCCcceeeeccC
Q 002362 811 CENCEKLPP-LGKLPSLEKLSISFM 834 (930)
Q Consensus 811 ~~~~~~l~~-l~~l~~L~~L~L~~~ 834 (930)
|.+. .+|. +. ++|+.|+|++|
T Consensus 261 N~l~-~lp~~~~--~~L~~L~Ls~N 282 (310)
T 4glp_A 261 AGLE-QVPKGLP--AKLRVLDLSSN 282 (310)
T ss_dssp SCCC-SCCSCCC--SCCSCEECCSC
T ss_pred CCCC-chhhhhc--CCCCEEECCCC
Confidence 8776 4454 43 78888888865
No 100
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.46 E-value=1.2e-11 Score=137.60 Aligned_cols=294 Identities=13% Similarity=0.065 Sum_probs=180.0
Q ss_pred CCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHh---c-CCeEEEEEeCCCccHHHH
Q 002362 169 EEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKR---K-FDKILWVCVSETFEEFRV 244 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~-F~~~~wv~vs~~~~~~~~ 244 (930)
++.++||+.+++++..++...-. ....+.+.|+|++|+||||||+.+++...-.. . -...+|+.+....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 36799999999999998854321 12456899999999999999999998422110 1 224678888888888899
Q ss_pred HHHHHHHhcCCCCC-CccHHHHHHHHHHHh--cCceEEEEEeCccccCcc--ChhhhhhhhccC-----CCCcEEEEEcC
Q 002362 245 AKAIVEALDGHESR-LGEFQSLIKHIYESV--AGMCFLLVLDDVWDGNYM--KWEPFFHCLKNG-----LHRSKILVTTR 314 (930)
Q Consensus 245 ~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~--~~~~l~~~l~~~-----~~gs~iivTtr 314 (930)
+..++.+++..... .....++...+.+.+ .+++.+||||+++..... ..+.+...+... ..+..+|+||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 99999998754332 233556666676666 456899999999764322 122233323211 34567788887
Q ss_pred ChHH--------HhhhCCcceEeCCCCChHHHHHHHHHHHc---CCCCchhhHHHHHHHHHHHHHcC---CchhH-HHHH
Q 002362 315 KKSV--------ASMMGSTNIISIKELTEEECRLLFNKIAF---SDRPIEEREKLEQIGRKIANKCK---GLPLA-AKII 379 (930)
Q Consensus 315 ~~~v--------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~---~~~~~~~~~~l~~~~~~i~~~c~---glPLa-i~~~ 379 (930)
.... ...+. ...+.+.+++.++..+++.+.+. ..... .+ +....+++.++ |.|.. +..+
T Consensus 176 ~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~--~~---~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVL--DP---DVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp CSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTB--CS---SHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCC--CH---HHHHHHHHHHHHhccCHHHHHHHH
Confidence 6522 22121 24789999999999999988753 22111 11 23556777777 99943 3333
Q ss_pred Hhhhc-----C--CCCHHHHHHHHhcccccchhhhhhHHHHHHHhhhcCChhHHHHHhHhc-CCCCCcccChHHHHHHHH
Q 002362 380 GSLMR-----S--KETEEEWRRILNSGLWKVEEIEKDILSSLLLSYNDLPSKVKKCFSYCA-IFPKDYNIEKDRLITLWM 451 (930)
Q Consensus 380 ~~~l~-----~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~lsy~~L~~~~k~cf~~~s-~fp~~~~i~~~~Li~~w~ 451 (930)
..+.. + .-+.+.+..++... ....+.-++..|+.+.+..+..+. ++-....+....+.+...
T Consensus 250 ~~a~~~a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 250 RVAGEIAERRREERVRREHVYSARAEI----------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 22221 1 12455555554331 122345577889998887766555 443222444554444322
Q ss_pred ----HhCCcCCCcchhHHHHHHHHHHHHHHccCCcccc
Q 002362 452 ----AQGYLDTEQDEEMESKGEEYFGILASRSFFQEFT 485 (930)
Q Consensus 452 ----a~g~i~~~~~~~~e~~~~~~~~~L~~~~l~~~~~ 485 (930)
..| +.+ .....+..+++.|...+++....
T Consensus 320 ~~~~~~~-~~~----~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 320 ELTSTLG-LEH----VTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHHTT-CCC----CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHhcC-CCC----CCHHHHHHHHHHHHhCCCeEEEe
Confidence 123 111 12356678999999999998754
No 101
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.46 E-value=1.5e-11 Score=136.55 Aligned_cols=294 Identities=14% Similarity=0.022 Sum_probs=180.5
Q ss_pred CCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHh----c--CCeEEEEEeCCCc-cH
Q 002362 169 EEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKR----K--FDKILWVCVSETF-EE 241 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~--F~~~~wv~vs~~~-~~ 241 (930)
+..++||+++++++..++..... ....+.+.|+|++|+||||||+.+++...-.. . ....+|+.++... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 36799999999999988764322 22456899999999999999999998422211 1 3457788877766 78
Q ss_pred HHHHHHHHHHhcCCCC--CCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhh-hhhhccCCCCcEEEEEcCChHH
Q 002362 242 FRVAKAIVEALDGHES--RLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPF-FHCLKNGLHRSKILVTTRKKSV 318 (930)
Q Consensus 242 ~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l-~~~l~~~~~gs~iivTtr~~~v 318 (930)
..++..++.++.+... ......+....+.+.+..++.+|||||++......+... ...+.....+..||+||+....
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCch
Confidence 8888999888843221 123345667777778876666999999976433222233 3333332267889999886532
Q ss_pred H----hhh--CCcceEeCCCCChHHHHHHHHHHHcC-CCCchhhHHHHHHHHHHHHHcC---Cchh-HHHHHHhhh--c-
Q 002362 319 A----SMM--GSTNIISIKELTEEECRLLFNKIAFS-DRPIEEREKLEQIGRKIANKCK---GLPL-AAKIIGSLM--R- 384 (930)
Q Consensus 319 ~----~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~l~~~~~~i~~~c~---glPL-ai~~~~~~l--~- 384 (930)
. ..+ .....+++++++.++..++|...+.. .......+ +....+++.++ |.|. |+..+..+. +
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 1 111 11238999999999999999987531 11111111 23556667776 8887 443333322 1
Q ss_pred --CCCCHHHHHHHHhcccccchhhhhhHHHHHHHhhhcCChhHHHHHhHhcCCCCCcccChHHHH--HHHHHhCC-cCCC
Q 002362 385 --SKETEEEWRRILNSGLWKVEEIEKDILSSLLLSYNDLPSKVKKCFSYCAIFPKDYNIEKDRLI--TLWMAQGY-LDTE 459 (930)
Q Consensus 385 --~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~lsy~~L~~~~k~cf~~~s~fp~~~~i~~~~Li--~~w~a~g~-i~~~ 459 (930)
..-+.+.+..++... ....+.-++..|+.+.+..+..++.. .. ...+. ..-+++.+ +..
T Consensus 254 ~~~~i~~~~v~~~~~~~----------~~~~~~~~~~~l~~~~~~~l~al~~~-~~----~~~~~~~~~~~~~~~g~~~- 317 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDY----------EQERLIEAVKALPFHYKLALRSLIES-ED----VMSAHKMYTDLCNKFKQKP- 317 (384)
T ss_dssp SSSCCCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHTC-CB----HHHHHHHHHHHHHHTTCCC-
T ss_pred CCCccCHHHHHHHHHHH----------hcchHHHHHHcCCHHHHHHHHHHHHh-cc----cChHHHHHHHHHHHcCCCC-
Confidence 123566666655431 12345667788998888777666651 11 01221 11222211 111
Q ss_pred cchhHHHHHHHHHHHHHHccCCccccc
Q 002362 460 QDEEMESKGEEYFGILASRSFFQEFTK 486 (930)
Q Consensus 460 ~~~~~e~~~~~~~~~L~~~~l~~~~~~ 486 (930)
........++..|...+++.....
T Consensus 318 ---~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 318 ---LSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp ---CCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred ---CCHHHHHHHHHHHHhCCCEEEEec
Confidence 122456678999999999987543
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.45 E-value=8.4e-14 Score=162.20 Aligned_cols=172 Identities=19% Similarity=0.185 Sum_probs=85.0
Q ss_pred ccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcC
Q 002362 609 ERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTL 688 (930)
Q Consensus 609 ~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 688 (930)
..|.+|++|++++|.|..+| .+..|++|++|+|++|. +..+|. +..+++|++|++++| .+..+| .++.+++|+.|
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence 34444444444444444443 24444444444444444 333333 444444444444444 222222 34444444444
Q ss_pred CceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHH
Q 002362 689 DEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQL 768 (930)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~ 768 (930)
++..+.... ...+..+++|+.|++.++.... + ..+..+++|+.|+|+.|.+.+.
T Consensus 115 ~Ls~N~l~~------l~~l~~l~~L~~L~Ls~N~l~~-l--------~~l~~l~~L~~L~Ls~N~l~~~----------- 168 (605)
T 1m9s_A 115 SLEHNGISD------INGLVHLPQLESLYLGNNKITD-I--------TVLSRLTKLDTLSLEDNQISDI----------- 168 (605)
T ss_dssp ECTTSCCCC------CGGGGGCTTCSEEECCSSCCCC-C--------GGGGSCTTCSEEECCSSCCCCC-----------
T ss_pred EecCCCCCC------CccccCCCccCEEECCCCccCC-c--------hhhcccCCCCEEECcCCcCCCc-----------
Confidence 433322211 1123333333333333332211 1 1355666777777777766542
Q ss_pred HhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCC
Q 002362 769 LLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCE 815 (930)
Q Consensus 769 ~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~ 815 (930)
.. +..+++|+.|+|++|.+.. +| .+..+++|+.|+|++|.+..
T Consensus 169 -~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 169 -VP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp -GG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEEC
T ss_pred -hh-hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcC
Confidence 22 5566777777777777766 43 46677777777777776544
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=6.8e-14 Score=148.51 Aligned_cols=80 Identities=19% Similarity=0.210 Sum_probs=47.7
Q ss_pred hcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCcccccccccc
Q 002362 579 RESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKL 658 (930)
Q Consensus 579 ~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L 658 (930)
..+++|+.|++++| .+..+| .++.+++|++|++++|.++.++. +.++++|++|++++|. +..+|. +..+
T Consensus 43 ~~l~~L~~L~l~~~-------~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l 111 (291)
T 1h6t_A 43 NELNSIDQIIANNS-------DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDL 111 (291)
T ss_dssp HHHHTCCEEECTTS-------CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTC
T ss_pred hhcCcccEEEccCC-------CcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccC
Confidence 34556666666643 233343 35666666666666666666655 6666666666666665 444443 6666
Q ss_pred CCcceEeecCc
Q 002362 659 INMRHLLNYGT 669 (930)
Q Consensus 659 ~~L~~L~l~~~ 669 (930)
++|++|++++|
T Consensus 112 ~~L~~L~L~~n 122 (291)
T 1h6t_A 112 KKLKSLSLEHN 122 (291)
T ss_dssp TTCCEEECTTS
T ss_pred CCCCEEECCCC
Confidence 66666666665
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.44 E-value=1.5e-13 Score=158.06 Aligned_cols=93 Identities=19% Similarity=0.289 Sum_probs=71.7
Q ss_pred CcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCc
Q 002362 582 TSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINM 661 (930)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L 661 (930)
.+|++|+|++| .+..+|..+. ++|++|+|++|.|+.+| ..+++|++|++++|. +..+|. +.. +|
T Consensus 59 ~~L~~L~Ls~n-------~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L 122 (571)
T 3cvr_A 59 NQFSELQLNRL-------NLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SL 122 (571)
T ss_dssp TTCSEEECCSS-------CCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TC
T ss_pred CCccEEEeCCC-------CCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CC
Confidence 37899999854 4556777664 78999999999999888 457899999999987 666888 655 89
Q ss_pred ceEeecCcccccccCCcCCCCCCCCcCCceEeC
Q 002362 662 RHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVS 694 (930)
Q Consensus 662 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 694 (930)
++|++++| .+..+|. .+++|+.|++.++.
T Consensus 123 ~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~ 151 (571)
T 3cvr_A 123 KHLDVDNN-QLTMLPE---LPALLEYINADNNQ 151 (571)
T ss_dssp CEEECCSS-CCSCCCC---CCTTCCEEECCSSC
T ss_pred CEEECCCC-cCCCCCC---cCccccEEeCCCCc
Confidence 99999888 4555776 57778877765443
No 105
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.43 E-value=2.6e-15 Score=165.23 Aligned_cols=215 Identities=15% Similarity=0.072 Sum_probs=124.0
Q ss_pred HHHHhhcCCcceEEEcCCcccccCCCCCcccC-----cccccCC-CCCeeeccCCccccc-ccccccC-----CcccEEe
Q 002362 574 LERLFRESTSLRVLEFGDWARSLQLGPLTRIP-----RNIERLV-HLRYLNLSNQSIRKL-PDTLCEL-----YNLQKLD 641 (930)
Q Consensus 574 ~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-----~~i~~L~-~Lr~L~L~~~~i~~l-p~~i~~L-----~~L~~L~ 641 (930)
++.++...+.|+.|+|++|. +...+ ..+..++ +|++|+|++|.++.. +..+..+ ++|++|+
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~-------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 86 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNN-------LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLN 86 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSC-------GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred HHHHHhCCCCceEEEccCCC-------CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEE
Confidence 55656666678999998654 33333 5667777 889999998888754 4455554 8888888
Q ss_pred ccCCCCCcccccccc----cc-CCcceEeecCcccccccCC-c----CCC-CCCCCcCCceEeCCCCCcCCCcccccccc
Q 002362 642 ISCCCKLKELPQGIG----KL-INMRHLLNYGTISLRYMPV-G----IGR-LTSLRTLDEFYVSGGGGIDGRKACRLESL 710 (930)
Q Consensus 642 l~~~~~~~~lp~~i~----~L-~~L~~L~l~~~~~~~~~p~-~----i~~-l~~L~~L~~~~~~~~~~~~~~~~~~l~~L 710 (930)
+++|......+..+. .+ ++|++|++++|. +...+. . +.. .++|++|+
T Consensus 87 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~--------------------- 144 (362)
T 3goz_A 87 LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLN--------------------- 144 (362)
T ss_dssp CCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEE---------------------
T ss_pred CcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEE---------------------
Confidence 888883334444333 33 788888888874 232221 1 112 12344433
Q ss_pred cCCCcCCeeeeecccCCCChhhhhhccccCCC-CCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCC-CCcceEEEeecc
Q 002362 711 RSLELLQVCGIRRLGNVTDVGEAKRLELDKMK-NLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPP-PNLRKLLIGSYR 788 (930)
Q Consensus 711 ~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~ 788 (930)
+.++...... .......+...+ +|+.|+|++|.++.. ....+...+..+ ++|++|++++|.
T Consensus 145 -------Ls~N~l~~~~---~~~l~~~l~~~~~~L~~L~Ls~n~l~~~-------~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 145 -------LRGNDLGIKS---SDELIQILAAIPANVNSLNLRGNNLASK-------NCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp -------CTTSCGGGSC---HHHHHHHHHTSCTTCCEEECTTSCGGGS-------CHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred -------ccCCcCCHHH---HHHHHHHHhcCCccccEeeecCCCCchh-------hHHHHHHHHHhCCCCCCEEECCCCC
Confidence 3332221110 011111233343 788888887766542 112233344444 478888888887
Q ss_pred CCCC----CCccccc-ccCccEEEeeCCCCCCCCC-----CCCCCCCcceeeeccC
Q 002362 789 GKTV----FPPWMMS-LTNLRSLDLDDCENCEKLP-----PLGKLPSLEKLSISFM 834 (930)
Q Consensus 789 ~~~~----~p~~~~~-l~~L~~L~L~~~~~~~~l~-----~l~~l~~L~~L~L~~~ 834 (930)
+... ++..+.. .++|+.|+|++|.+....+ .+..+++|+.|+|++|
T Consensus 208 i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 208 LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 6542 2333333 3478888888876654322 1466777788877765
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.43 E-value=2.7e-13 Score=143.88 Aligned_cols=102 Identities=18% Similarity=0.259 Sum_probs=63.8
Q ss_pred cCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcccccc
Q 002362 549 CGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLP 628 (930)
Q Consensus 549 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp 628 (930)
..+++|+.|.+.++.+... +. +..+++|++|+|++| .+..++. ++++++|++|++++|.++.+|
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-------~~-~~~l~~L~~L~L~~n-------~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 106 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-------QG-IQYLPNVTKLFLNGN-------KLTDIKP-LANLKNLGWLFLDENKVKDLS 106 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-------TT-GGGCTTCCEEECCSS-------CCCCCGG-GTTCTTCCEEECCSSCCCCGG
T ss_pred hhcCcccEEEccCCCcccC-------hh-HhcCCCCCEEEccCC-------ccCCCcc-cccCCCCCEEECCCCcCCCCh
Confidence 3566677777776654322 11 556677777777744 3344444 667777777777777776655
Q ss_pred cccccCCcccEEeccCCCCCccccccccccCCcceEeecCc
Q 002362 629 DTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGT 669 (930)
Q Consensus 629 ~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~ 669 (930)
. +..+++|++|++++|. +..++ .+..+++|++|++++|
T Consensus 107 ~-l~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 107 S-LKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNN 144 (291)
T ss_dssp G-GTTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSS
T ss_pred h-hccCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCC
Confidence 4 6677777777777776 44443 4666667777776666
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.42 E-value=5e-13 Score=146.15 Aligned_cols=79 Identities=29% Similarity=0.347 Sum_probs=61.9
Q ss_pred CCCCCCeeEEEe-eCCCCCCcCCCccchHHHh-hcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCC
Q 002362 740 KMKNLSCLKLLF-NKEEGDGQRRKNEDDQLLL-EFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKL 817 (930)
Q Consensus 740 ~~~~L~~L~L~~-~~~~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l 817 (930)
...+|+.|.+.. |.+.. ++ ..+..+++|+.|++++|.++. +|.+ .+.+|+.|.+.++...+.+
T Consensus 175 ~~~~L~~l~l~~~n~l~~------------i~~~~f~~l~~L~~LdLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~~l 239 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEE------------LPNDVFHGASGPVILDISRTRIHS-LPSY--GLENLKKLRARSTYNLKKL 239 (350)
T ss_dssp TTEEEEEEECTTCTTCCC------------CCTTTTTTEECCSEEECTTSCCCC-CCSS--SCTTCCEEECTTCTTCCCC
T ss_pred cccchhHHhhccCCcccC------------CCHHHhccCcccchhhcCCCCcCc-cChh--hhccchHhhhccCCCcCcC
Confidence 345677888764 44443 23 346788999999999999888 7764 4778899999888888899
Q ss_pred CCCCCCCCcceeeecc
Q 002362 818 PPLGKLPSLEKLSISF 833 (930)
Q Consensus 818 ~~l~~l~~L~~L~L~~ 833 (930)
|.+..+++|+.+++.+
T Consensus 240 P~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 240 PTLEKLVALMEASLTY 255 (350)
T ss_dssp CCTTTCCSCCEEECSC
T ss_pred CCchhCcChhhCcCCC
Confidence 9999999999999874
No 108
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.42 E-value=4.7e-13 Score=138.93 Aligned_cols=179 Identities=17% Similarity=0.108 Sum_probs=122.3
Q ss_pred CcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccccccc-ccccCCcccEEeccCCCCCccccccccccCC
Q 002362 582 TSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPD-TLCELYNLQKLDISCCCKLKELPQGIGKLIN 660 (930)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~ 660 (930)
...+.++++ .. .+..+|..+. .+|++|+|++|.+..++. .+.++++|++|++++|......|..+..+++
T Consensus 14 ~~~~~l~~~---~~----~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 84 (251)
T 3m19_A 14 EGKKEVDCQ---GK----SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE 84 (251)
T ss_dssp GGGTEEECT---TC----CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CCCeEEecC---CC----CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCc
Confidence 346778887 33 5667777665 588888888888887654 5788888888888888744444455788888
Q ss_pred cceEeecCcccccccC-CcCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhcccc
Q 002362 661 MRHLLNYGTISLRYMP-VGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELD 739 (930)
Q Consensus 661 L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~ 739 (930)
|++|++++|. +..+| ..++.+++|++|++..+.... ..+. .+.
T Consensus 85 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~----------------------------~~~~-------~~~ 128 (251)
T 3m19_A 85 LGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKS----------------------------LPSG-------VFD 128 (251)
T ss_dssp CCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCC----------------------------CCTT-------TTT
T ss_pred CCEEECCCCc-ccccChhHhcccCCCCEEEcCCCcCCC----------------------------cChh-------Hhc
Confidence 8888888884 34444 345667777776654332111 0111 244
Q ss_pred CCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCC
Q 002362 740 KMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEK 816 (930)
Q Consensus 740 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~ 816 (930)
.+++|+.|+|++|.+... ....+..+++|++|++++|.+....|..+..+++|+.|+|++|.+...
T Consensus 129 ~l~~L~~L~Ls~N~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 129 RLTKLKELRLNTNQLQSI-----------PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCTTCCEEECCSSCCCCC-----------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCcccEEECcCCcCCcc-----------CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 567788888888877652 123466778888888888888874445677888899999988876544
No 109
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.42 E-value=9e-13 Score=136.77 Aligned_cols=176 Identities=15% Similarity=0.059 Sum_probs=134.9
Q ss_pred CCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCCce
Q 002362 612 VHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEF 691 (930)
Q Consensus 612 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 691 (930)
...++++++++.++.+|..+. .+|++|++++|......|..+..+++|++|++++|......|..++.+++|++|++.
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 357889999999999998876 699999999999444455578999999999999985433334446777788777754
Q ss_pred EeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhh
Q 002362 692 YVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLE 771 (930)
Q Consensus 692 ~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 771 (930)
.+... ...+. .+..+++|+.|+|++|.+... ...
T Consensus 92 ~n~l~----------------------------~~~~~-------~~~~l~~L~~L~L~~N~l~~~-----------~~~ 125 (251)
T 3m19_A 92 NNQLA----------------------------SLPLG-------VFDHLTQLDKLYLGGNQLKSL-----------PSG 125 (251)
T ss_dssp TSCCC----------------------------CCCTT-------TTTTCTTCCEEECCSSCCCCC-----------CTT
T ss_pred CCccc----------------------------ccChh-------HhcccCCCCEEEcCCCcCCCc-----------Chh
Confidence 32211 11111 355678999999999988763 223
Q ss_pred cCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCC-CCCCCCCcceeeeccCc
Q 002362 772 FLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLP-PLGKLPSLEKLSISFMC 835 (930)
Q Consensus 772 ~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 835 (930)
.+..+++|+.|++++|.+....|..+..+++|+.|+|++|.+....+ .+..+++|+.|+|++|+
T Consensus 126 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 126 VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 46778999999999999988334478899999999999998876555 38899999999999764
No 110
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.42 E-value=4.7e-11 Score=132.83 Aligned_cols=320 Identities=14% Similarity=0.051 Sum_probs=191.7
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcC-CeEEEEEeCCCccHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKF-DKILWVCVSETFEEFRVAKAI 248 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i 248 (930)
+.++||+.+++++..++.....+.....+.+.|+|++|+||||||+.+++. ..... ..++|+.++...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 679999999999999886531110123348999999999999999999873 33331 357788888888888999999
Q ss_pred HHHhcCCCCC-CccHHHHHHHHHHHhc--CceEEEEEeCccccCccChhhhhhhhccCC----CCcEEEEEcCChHHHhh
Q 002362 249 VEALDGHESR-LGEFQSLIKHIYESVA--GMCFLLVLDDVWDGNYMKWEPFFHCLKNGL----HRSKILVTTRKKSVASM 321 (930)
Q Consensus 249 ~~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~iivTtr~~~v~~~ 321 (930)
+..++..... .....++...+.+.+. +++.+||||+++..+......+...+.... .+..||+||+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 9988654322 2345556666666553 668899999998764444444544443211 36678888876644332
Q ss_pred hC-------CcceEeCCCCChHHHHHHHHHHHcC---CCCchhhHHHHHHHHHHHHHc---------CCchhHHHHHHhh
Q 002362 322 MG-------STNIISIKELTEEECRLLFNKIAFS---DRPIEEREKLEQIGRKIANKC---------KGLPLAAKIIGSL 382 (930)
Q Consensus 322 ~~-------~~~~~~l~~L~~~~~~~lf~~~~~~---~~~~~~~~~l~~~~~~i~~~c---------~glPLai~~~~~~ 382 (930)
+. ....+++.+++.++..+++...+.. ... . . .+....|++.+ +|.|..+..+...
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~-~-~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~ 249 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGS-Y-S---EDILQMIADITGAQTPLDTNRGDARLAIDILYR 249 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTS-S-C---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCC-C-C---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHH
Confidence 21 1237999999999999999887532 111 1 1 23466788888 7887554443322
Q ss_pred h-c-----CC--CCHHHHHHHHhcccccchhhhhhHHHHHHHhhhcCChhHHHHHhHhcCCC---CCcccChHHHHHHHH
Q 002362 383 M-R-----SK--ETEEEWRRILNSGLWKVEEIEKDILSSLLLSYNDLPSKVKKCFSYCAIFP---KDYNIEKDRLITLWM 451 (930)
Q Consensus 383 l-~-----~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~lsy~~L~~~~k~cf~~~s~fp---~~~~i~~~~Li~~w~ 451 (930)
. . .. -+.+....+...... ..+.-.+..||.+.+.++..++.+. .+..+....+...+-
T Consensus 250 a~~~a~~~~~~~i~~~~v~~~~~~~~~----------~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~ 319 (389)
T 1fnn_A 250 SAYAAQQNGRKHIAPEDVRKSSKEVLF----------GISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYK 319 (389)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHSC----------CCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHhh----------hhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHH
Confidence 1 1 11 122332222221110 0112345678888888777777654 222455566655543
Q ss_pred H----hCCcCCCcchhHHHHHHHHHHHHHHccCCccccc----CCCCceeeEE----ecHHHHHHHHHhhhc
Q 002362 452 A----QGYLDTEQDEEMESKGEEYFGILASRSFFQEFTK----SYDNCIMQCK----MHDMVHDFGQFISQN 511 (930)
Q Consensus 452 a----~g~i~~~~~~~~e~~~~~~~~~L~~~~l~~~~~~----~~~~~~~~~~----mh~lv~~~a~~~s~~ 511 (930)
. .|... . .......++++|...+++..... +..++...++ .|+++..+...+..+
T Consensus 320 ~~~~~~~~~~-~----~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~ 386 (389)
T 1fnn_A 320 IVCEEYGERP-R----VHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKE 386 (389)
T ss_dssp HHHHHTTCCC-C----CHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCC-C----CHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHH
Confidence 3 23211 1 12346679999999999987543 1123222222 356666666555443
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.39 E-value=3.5e-13 Score=157.03 Aligned_cols=188 Identities=21% Similarity=0.178 Sum_probs=144.8
Q ss_pred CCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCCce
Q 002362 612 VHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEF 691 (930)
Q Consensus 612 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 691 (930)
..+..+++..+.+..++. +..|.+|+.|++++|. +..+| .+..+++|++|++++| .+..+|. ++.+++|+.|++.
T Consensus 21 ~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECC
T ss_pred HHHHHHhccCCCcccccc-hhcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECc
Confidence 345556677776665543 5789999999999998 77777 5999999999999999 4566665 8999999999987
Q ss_pred EeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhh
Q 002362 692 YVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLE 771 (930)
Q Consensus 692 ~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 771 (930)
.+.... ...+..+++|+.|++.++.... ++ .+..+++|+.|+|+.|.+.. + .
T Consensus 96 ~N~l~~------l~~l~~l~~L~~L~Ls~N~l~~-l~--------~l~~l~~L~~L~Ls~N~l~~------------l-~ 147 (605)
T 1m9s_A 96 ENKIKD------LSSLKDLKKLKSLSLEHNGISD-IN--------GLVHLPQLESLYLGNNKITD------------I-T 147 (605)
T ss_dssp SSCCCC------CTTSTTCTTCCEEECTTSCCCC-CG--------GGGGCTTCSEEECCSSCCCC------------C-G
T ss_pred CCCCCC------ChhhccCCCCCEEEecCCCCCC-Cc--------cccCCCccCEEECCCCccCC------------c-h
Confidence 765543 3356677777777776665432 11 36678899999999988765 2 4
Q ss_pred cCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCCCCCCCCcceeeeccCc
Q 002362 772 FLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPPLGKLPSLEKLSISFMC 835 (930)
Q Consensus 772 ~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 835 (930)
.+..+++|+.|+|++|.+.+ ++. +..+++|+.|+|++|.+.. +|.+..|++|+.|+|++|.
T Consensus 148 ~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 148 VLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GGGSCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEECCSEE
T ss_pred hhcccCCCCEEECcCCcCCC-chh-hccCCCCCEEECcCCCCCC-ChHHccCCCCCEEEccCCc
Confidence 56678899999999999887 544 7889999999999996654 5778899999999998764
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.38 E-value=1e-14 Score=160.46 Aligned_cols=241 Identities=12% Similarity=0.043 Sum_probs=143.0
Q ss_pred ccCCCCccEEEEccccccccchhhhHHHHHhhcCC-cceEEEcCCcccccCCCCCcccCcccccC-----CCCCeeeccC
Q 002362 548 TCGVKRMRSLIIDYSRYFHLYLNGKILERLFREST-SLRVLEFGDWARSLQLGPLTRIPRNIERL-----VHLRYLNLSN 621 (930)
Q Consensus 548 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~-~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L-----~~Lr~L~L~~ 621 (930)
....++|++|+++++.+... ....+...+..++ +|++|+|++|... ...+..+..+ ++|++|+|++
T Consensus 18 ~~~~~~L~~L~Ls~n~l~~~--~~~~l~~~l~~~~~~L~~L~Ls~N~l~------~~~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLYSI--STVELIQAFANTPASVTSLNLSGNSLG------FKNSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGS--CHHHHHHHHHTCCTTCCEEECCSSCGG------GSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred HhCCCCceEEEccCCCCChH--HHHHHHHHHHhCCCceeEEECcCCCCC------HHHHHHHHHHHhccCCCccEEECcC
Confidence 34455699999999975432 1122335678888 8999999976543 1224455554 9999999999
Q ss_pred Cccccccc-c----cccC-CcccEEeccCCCCCcccc-cccc----c-cCCcceEeecCccccc----ccCCcCCCCC-C
Q 002362 622 QSIRKLPD-T----LCEL-YNLQKLDISCCCKLKELP-QGIG----K-LINMRHLLNYGTISLR----YMPVGIGRLT-S 684 (930)
Q Consensus 622 ~~i~~lp~-~----i~~L-~~L~~L~l~~~~~~~~lp-~~i~----~-L~~L~~L~l~~~~~~~----~~p~~i~~l~-~ 684 (930)
|.++..+. . +..+ ++|++|++++|. +...+ ..+. . .++|++|++++|.... .++..+..++ +
T Consensus 90 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 168 (362)
T 3goz_A 90 NFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTT
T ss_pred CcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcc
Confidence 99985543 3 4445 899999999998 44443 3333 3 3699999999984332 3333334443 6
Q ss_pred CCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCC-CCCCeeEEEeeCCCCCCcCCCc
Q 002362 685 LRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKM-KNLSCLKLLFNKEEGDGQRRKN 763 (930)
Q Consensus 685 L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~L~~~~~~~~~~~~~~ 763 (930)
|++|++..+... ... .......+... ++|+.|+|++|.++..
T Consensus 169 L~~L~Ls~n~l~----------------------------~~~---~~~l~~~l~~~~~~L~~L~Ls~N~i~~~------ 211 (362)
T 3goz_A 169 VNSLNLRGNNLA----------------------------SKN---CAELAKFLASIPASVTSLDLSANLLGLK------ 211 (362)
T ss_dssp CCEEECTTSCGG----------------------------GSC---HHHHHHHHHTSCTTCCEEECTTSCGGGS------
T ss_pred ccEeeecCCCCc----------------------------hhh---HHHHHHHHHhCCCCCCEEECCCCCCChh------
Confidence 666654332211 110 01111123334 3777777777765431
Q ss_pred cchHHHhhcCCC-CCCcceEEEeeccCCCCCC----cccccccCccEEEeeCCCCCCC-------C-CCCCCCCCcceee
Q 002362 764 EDDQLLLEFLQP-PPNLRKLLIGSYRGKTVFP----PWMMSLTNLRSLDLDDCENCEK-------L-PPLGKLPSLEKLS 830 (930)
Q Consensus 764 ~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~p----~~~~~l~~L~~L~L~~~~~~~~-------l-~~l~~l~~L~~L~ 830 (930)
....++..+.. +++|++|++++|.+....+ ..+..+++|+.|+|++|.+... + ..+..+++|+.|+
T Consensus 212 -~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~Ld 290 (362)
T 3goz_A 212 -SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290 (362)
T ss_dssp -CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEEC
T ss_pred -HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEe
Confidence 11223333333 3577777777777665222 2234567777777777752221 1 1356777788888
Q ss_pred eccCc
Q 002362 831 ISFMC 835 (930)
Q Consensus 831 L~~~~ 835 (930)
++++.
T Consensus 291 L~~N~ 295 (362)
T 3goz_A 291 KNGKE 295 (362)
T ss_dssp TTSCB
T ss_pred cCCCc
Confidence 87553
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=6.6e-13 Score=152.78 Aligned_cols=174 Identities=18% Similarity=0.119 Sum_probs=127.5
Q ss_pred CCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCCceE
Q 002362 613 HLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFY 692 (930)
Q Consensus 613 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~ 692 (930)
+|++|+|++|.++.+|..+. ++|++|++++|. +..+| ..+++|++|++++| .+..+|. ++. +|++|++.+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence 89999999999999998774 899999999998 77899 56899999999999 5566888 665 899988776
Q ss_pred eCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhc
Q 002362 693 VSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEF 772 (930)
Q Consensus 693 ~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 772 (930)
+.... ++. .+++|+.|++.+|.... ++. .+++|+.|+|++|.+++ ++.
T Consensus 130 N~l~~-----lp~---~l~~L~~L~Ls~N~l~~-lp~----------~l~~L~~L~Ls~N~L~~------------lp~- 177 (571)
T 3cvr_A 130 NQLTM-----LPE---LPALLEYINADNNQLTM-LPE----------LPTSLEVLSVRNNQLTF------------LPE- 177 (571)
T ss_dssp SCCSC-----CCC---CCTTCCEEECCSSCCSC-CCC----------CCTTCCEEECCSSCCSC------------CCC-
T ss_pred CcCCC-----CCC---cCccccEEeCCCCccCc-CCC----------cCCCcCEEECCCCCCCC------------cch-
Confidence 55433 122 45667767666665432 222 35678888888887765 233
Q ss_pred CCCCCCcceEEEeeccCCCCCCcccccccCc-------cEEEeeCCCCCCCCCC-CCCCCCcceeeeccCc
Q 002362 773 LQPPPNLRKLLIGSYRGKTVFPPWMMSLTNL-------RSLDLDDCENCEKLPP-LGKLPSLEKLSISFMC 835 (930)
Q Consensus 773 l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L-------~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 835 (930)
+. ++|+.|++++|.+.. +|. +.. +| +.|+|++|.+.. +|. +..+++|+.|+|++|+
T Consensus 178 l~--~~L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 178 LP--ESLEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CC--TTCCEEECCSSCCSS-CCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSS
T ss_pred hh--CCCCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCc
Confidence 32 788888888888776 777 543 56 888888887664 454 7778888888888654
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.34 E-value=3.5e-12 Score=126.80 Aligned_cols=147 Identities=14% Similarity=0.146 Sum_probs=91.4
Q ss_pred cceeEEEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCccc
Q 002362 529 EKVRHLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNI 608 (930)
Q Consensus 529 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i 608 (930)
..++++.+..+.+..++ .+..+++|++|.+.++..... + .+..+++|++|++++|... ...|..+
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~-------~-~l~~l~~L~~L~l~~n~l~------~~~~~~l 108 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY-------N-PISGLSNLERLRIMGKDVT------SDKIPNL 108 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC-------G-GGTTCTTCCEEEEECTTCB------GGGSCCC
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc-------h-hhhcCCCCCEEEeECCccC------cccChhh
Confidence 35667777776666544 566677777777776643211 1 2566677777777754322 2245666
Q ss_pred ccCCCCCeeeccCCcccc-cccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCc
Q 002362 609 ERLVHLRYLNLSNQSIRK-LPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRT 687 (930)
Q Consensus 609 ~~L~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 687 (930)
+.+++|++|++++|.++. .|..++.+++|++|++++|..+..+| .+..+++|++|++++| .+..++ .+..+++|++
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQ 185 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCE
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH-HhccCCCCCE
Confidence 777777777777777663 55666777777777777776455665 4677777777777766 334444 5566666666
Q ss_pred CCceEe
Q 002362 688 LDEFYV 693 (930)
Q Consensus 688 L~~~~~ 693 (930)
|++.++
T Consensus 186 L~l~~N 191 (197)
T 4ezg_A 186 LYAFSQ 191 (197)
T ss_dssp EEECBC
T ss_pred EEeeCc
Confidence 665443
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.34 E-value=6.5e-15 Score=170.61 Aligned_cols=218 Identities=18% Similarity=0.147 Sum_probs=134.0
Q ss_pred ccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcC
Q 002362 609 ERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTL 688 (930)
Q Consensus 609 ~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 688 (930)
..+++|+.|+|++|.++.+|.+|++|++|+.|++++|..+..+|..+.. + ......|..++.+++|+.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~------~-----~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRA------L-----DPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------H-----CTGGGHHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHh------c-----ccccCCHHHHHHHHhcccC
Confidence 5678899999999999999999999999999998766433333321111 1 1123344555556666655
Q ss_pred CceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHH
Q 002362 689 DEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQL 768 (930)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~ 768 (930)
+.. ....+.+|..+.+.++... .+ ....|+.|+|++|.+++
T Consensus 415 ~~l--------------~~n~~~~L~~l~l~~n~i~------------~l-~~~~L~~L~Ls~n~l~~------------ 455 (567)
T 1dce_A 415 DPM--------------RAAYLDDLRSKFLLENSVL------------KM-EYADVRVLHLAHKDLTV------------ 455 (567)
T ss_dssp CGG--------------GHHHHHHHHHHHHHHHHHH------------HH-HHTTCSEEECTTSCCSS------------
T ss_pred cch--------------hhcccchhhhhhhhccccc------------cc-CccCceEEEecCCCCCC------------
Confidence 510 0011122222222211110 00 01247888888887765
Q ss_pred HhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCCCCCCCCcceeeeccCcCceEeCCccccCc
Q 002362 769 LLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPPLGKLPSLEKLSISFMCSVKRVDNEILGIE 848 (930)
Q Consensus 769 ~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 848 (930)
++. +..+++|+.|++++|.+.. +|..++.+++|+.|+|++|.+.+ +|.++.+++|+.|+|++|. + .+..
T Consensus 456 lp~-~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N~-l-------~~~~ 524 (567)
T 1dce_A 456 LCH-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNR-L-------QQSA 524 (567)
T ss_dssp CCC-GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSC-C-------CSSS
T ss_pred CcC-ccccccCcEeecCcccccc-cchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCCC-C-------CCCC
Confidence 333 6677888888888888886 88888888888888888887665 6778888888888888653 2 1110
Q ss_pred ccccCccccceeeccccccccceeeeccCCccCCCCCCCC----CCCCccEEEE
Q 002362 849 ITIAFPKLKSLTISWIIMPRLSSLTFDSCPKLKALPDHFH----QTTTLKEFNI 898 (930)
Q Consensus 849 ~~~~f~~L~~L~l~~~~lp~L~~L~l~~c~~L~~lp~~l~----~l~~L~~L~l 898 (930)
. ...+. .+++|+.|++++| .+..+|..+. .+|+|+.|++
T Consensus 525 ~---p~~l~-------~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 525 A---IQPLV-------SCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp T---TGGGG-------GCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred C---cHHHh-------cCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 0 01111 2677788888877 4666665443 2677777753
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.33 E-value=1.3e-12 Score=129.94 Aligned_cols=125 Identities=15% Similarity=0.150 Sum_probs=67.8
Q ss_pred cCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcccc-c
Q 002362 549 CGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRK-L 627 (930)
Q Consensus 549 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-l 627 (930)
..+++|+.|.+.++.+... + .+..+++|++|++++|. +..+ ..+..+++|++|++++|.++. .
T Consensus 41 ~~l~~L~~L~l~~n~i~~l-------~-~l~~l~~L~~L~l~~n~-------~~~~-~~l~~l~~L~~L~l~~n~l~~~~ 104 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL-------T-GIEYAHNIKDLTINNIH-------ATNY-NPISGLSNLERLRIMGKDVTSDK 104 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC-------T-TGGGCTTCSEEEEESCC-------CSCC-GGGTTCTTCCEEEEECTTCBGGG
T ss_pred hhcCCccEEeccCCCccCh-------H-HHhcCCCCCEEEccCCC-------CCcc-hhhhcCCCCCEEEeECCccCccc
Confidence 3455666666666543221 1 15556666666666442 2222 245566666666666666653 4
Q ss_pred ccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCCc
Q 002362 628 PDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDE 690 (930)
Q Consensus 628 p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 690 (930)
|..++.+++|++|++++|......|..+..+++|++|++++|..+..+| .++.+++|+.|++
T Consensus 105 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l 166 (197)
T 4ezg_A 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNI 166 (197)
T ss_dssp SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEEC
T ss_pred ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEEC
Confidence 5556666666666666665333455556666666666666663344443 3444555554443
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.32 E-value=8e-13 Score=137.87 Aligned_cols=79 Identities=18% Similarity=0.226 Sum_probs=61.3
Q ss_pred cCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccC
Q 002362 580 ESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLI 659 (930)
Q Consensus 580 ~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~ 659 (930)
.+..+..|+++++ .+..++ .+..+.+|++|++++|.++.+| .+..+++|++|++++|. +..+|. +..++
T Consensus 17 ~l~~l~~l~l~~~-------~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~ 85 (263)
T 1xeu_A 17 GLANAVKQNLGKQ-------SVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLT 85 (263)
T ss_dssp HHHHHHHHHHTCS-------CTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCS
T ss_pred HHHHHHHHHhcCC-------Cccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCC
Confidence 4455677777743 455565 6778888888999888888887 67888888888888887 667766 88888
Q ss_pred CcceEeecCc
Q 002362 660 NMRHLLNYGT 669 (930)
Q Consensus 660 ~L~~L~l~~~ 669 (930)
+|++|++++|
T Consensus 86 ~L~~L~L~~N 95 (263)
T 1xeu_A 86 KLEELSVNRN 95 (263)
T ss_dssp SCCEEECCSS
T ss_pred CCCEEECCCC
Confidence 8888888877
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.32 E-value=2.1e-14 Score=166.24 Aligned_cols=56 Identities=20% Similarity=0.150 Sum_probs=41.9
Q ss_pred hcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCc--------------ccccccccccCCcccEEe
Q 002362 579 RESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQS--------------IRKLPDTLCELYNLQKLD 641 (930)
Q Consensus 579 ~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~--------------i~~lp~~i~~L~~L~~L~ 641 (930)
..++.|+.|+|+ .+ .+..+|..|++|.+|+.|++++|. ....|..++.|++|+.|+
T Consensus 346 ~~~~~L~~L~Ls---~n----~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~ 415 (567)
T 1dce_A 346 ATDEQLFRCELS---VE----KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 415 (567)
T ss_dssp STTTTSSSCCCC---HH----HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred ccCccceeccCC---hh----hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCc
Confidence 567899999999 44 577899999999999999997764 113344555666666665
No 119
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.32 E-value=4.8e-11 Score=132.59 Aligned_cols=294 Identities=15% Similarity=0.111 Sum_probs=172.6
Q ss_pred CCceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcC---CeEEEEEeCCCccHHHHH
Q 002362 169 EEEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKF---DKILWVCVSETFEEFRVA 245 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~~ 245 (930)
+..++||+.+++.+.+++..... ......+.|+|++|+||||||+.+++. ....+ ...+|+.+....+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 46799999999999998864311 124568999999999999999999983 44443 356788876666777888
Q ss_pred HHHHHHhcCCCCC-CccHHHHHHHHHHHhc--CceEEEEEeCccccC----ccChhhhhhhhcc-CCCCcEEEEEcCChH
Q 002362 246 KAIVEALDGHESR-LGEFQSLIKHIYESVA--GMCFLLVLDDVWDGN----YMKWEPFFHCLKN-GLHRSKILVTTRKKS 317 (930)
Q Consensus 246 ~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iivTtr~~~ 317 (930)
..++.+++..... ..+..+....+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 8888777543221 2235555666666664 458999999997632 1222333333322 233556788887654
Q ss_pred HHhhhC-----C--cceEeCCCCChHHHHHHHHHHHcCC-CCchhhHHHHHHHHHHHHHcC---CchhHHHHH-Hhhhc-
Q 002362 318 VASMMG-----S--TNIISIKELTEEECRLLFNKIAFSD-RPIEEREKLEQIGRKIANKCK---GLPLAAKII-GSLMR- 384 (930)
Q Consensus 318 v~~~~~-----~--~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~l~~~~~~i~~~c~---glPLai~~~-~~~l~- 384 (930)
....+. . ...+++++++.++.++++.+.+... ......+ ++...+++.++ |.|..+..+ ..+..
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPD---NVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCH---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 322221 1 2589999999999999998864210 0111112 23455666666 998844333 22221
Q ss_pred ----C--CCCHHHHHHHHhcccccchhhhhhHHHHHHHhhhcCChhHHHHHhHhcCCCC-C-cccChHHHHHHH--HHh-
Q 002362 385 ----S--KETEEEWRRILNSGLWKVEEIEKDILSSLLLSYNDLPSKVKKCFSYCAIFPK-D-YNIEKDRLITLW--MAQ- 453 (930)
Q Consensus 385 ----~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~lsy~~L~~~~k~cf~~~s~fp~-~-~~i~~~~Li~~w--~a~- 453 (930)
. .-+.+....++... ....+.-++..+|.+.+..+..++.+.+ + ..+....+.+.. +++
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred HHhcCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 1 12444444444321 1234555677888887776666653221 1 123333333322 111
Q ss_pred -CCcCCCcchhHHHHHHHHHHHHHHccCCccc
Q 002362 454 -GYLDTEQDEEMESKGEEYFGILASRSFFQEF 484 (930)
Q Consensus 454 -g~i~~~~~~~~e~~~~~~~~~L~~~~l~~~~ 484 (930)
| +.+. .......+++.|...+++...
T Consensus 322 ~g-~~~~----~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 322 LG-VEAV----TQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HT-CCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred cC-CCCC----CHHHHHHHHHHHHhCCCEEEE
Confidence 2 1111 123456789999999999764
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.31 E-value=3.3e-12 Score=128.29 Aligned_cols=86 Identities=31% Similarity=0.493 Sum_probs=43.0
Q ss_pred CcccCcccccCCCCCeeeccCCcccccccc-cccCCcccEEeccCCCCCcccccc-ccccCCcceEeecCcccccccCCc
Q 002362 601 LTRIPRNIERLVHLRYLNLSNQSIRKLPDT-LCELYNLQKLDISCCCKLKELPQG-IGKLINMRHLLNYGTISLRYMPVG 678 (930)
Q Consensus 601 ~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~ 678 (930)
+..+|..+ ..+|++|++++|.++.+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++| .+..+|..
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~ 94 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNG 94 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCC-cCCccCHh
Confidence 34444433 23556666666655555443 4555666666666555 3344432 355566666666555 23333332
Q ss_pred -CCCCCCCCcCCc
Q 002362 679 -IGRLTSLRTLDE 690 (930)
Q Consensus 679 -i~~l~~L~~L~~ 690 (930)
++.+++|++|++
T Consensus 95 ~~~~l~~L~~L~L 107 (208)
T 2o6s_A 95 VFDKLTQLKELAL 107 (208)
T ss_dssp TTTTCTTCCEEEC
T ss_pred HhcCccCCCEEEc
Confidence 344555555543
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.30 E-value=8.6e-13 Score=137.64 Aligned_cols=120 Identities=18% Similarity=0.201 Sum_probs=90.2
Q ss_pred CCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccccccc
Q 002362 550 GVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPD 629 (930)
Q Consensus 550 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~ 629 (930)
.+.++..+.+.++...+. . .+..+++|++|++++| .+..+| .++.+++|++|+|++|.|+.+|.
T Consensus 17 ~l~~l~~l~l~~~~i~~~------~--~~~~l~~L~~L~l~~n-------~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~ 80 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL------V--SQKELSGVQNFNGDNS-------NIQSLA-GMQFFTNLKELHLSHNQISDLSP 80 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE------E--CHHHHTTCSEEECTTS-------CCCCCT-TGGGCTTCCEEECCSSCCCCCGG
T ss_pred HHHHHHHHHhcCCCcccc------c--chhhcCcCcEEECcCC-------Ccccch-HHhhCCCCCEEECCCCccCCChh
Confidence 345555666666653322 1 2567889999999954 456666 78899999999999999999988
Q ss_pred ccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCCce
Q 002362 630 TLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEF 691 (930)
Q Consensus 630 ~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 691 (930)
+..+++|++|++++|. +..+|.... ++|++|++++| .+..+| .++.+++|+.|++.
T Consensus 81 -l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls 136 (263)
T 1xeu_A 81 -LKDLTKLEELSVNRNR-LKNLNGIPS--ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIR 136 (263)
T ss_dssp -GTTCSSCCEEECCSSC-CSCCTTCCC--SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECT
T ss_pred -hccCCCCCEEECCCCc-cCCcCcccc--CcccEEEccCC-ccCCCh-hhcCcccccEEECC
Confidence 9999999999999998 777776433 89999999988 445544 46777777777654
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.29 E-value=1.1e-12 Score=156.95 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=98.0
Q ss_pred cceeEEEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCccc
Q 002362 529 EKVRHLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNI 608 (930)
Q Consensus 529 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i 608 (930)
..++++.+..+.....+.......+|+.+.+...... ......++..+..++.|++|+|++| .+..+|..+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~--~n~~~~~~~~~~~l~~L~~L~Ls~n-------~l~~l~~~~ 243 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDI--ENRMVMPKDSKYDDQLWHALDLSNL-------QIFNISANI 243 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTS-------CCSCCCGGG
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccc--ccceecChhhhccCCCCcEEECCCC-------CCCCCChhh
Confidence 4467777766665544444434444444443332110 0011234666889999999999954 566789899
Q ss_pred ccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcC
Q 002362 609 ERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTL 688 (930)
Q Consensus 609 ~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 688 (930)
.++.+|++|+|++|.|+.+|..|++|++|++|+|++|. +..+|..|+.|++|++|+|++| .+..+|..|+.|++|++|
T Consensus 244 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 244 FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFL 321 (727)
T ss_dssp GGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCE
T ss_pred cCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEE
Confidence 99999999999999999999999999999999999998 6699999999999999999999 567999999999999999
Q ss_pred CceEeCCC
Q 002362 689 DEFYVSGG 696 (930)
Q Consensus 689 ~~~~~~~~ 696 (930)
++..+...
T Consensus 322 ~L~~N~l~ 329 (727)
T 4b8c_D 322 GVEGNPLE 329 (727)
T ss_dssp ECTTSCCC
T ss_pred eCCCCccC
Confidence 97665543
No 123
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.28 E-value=6e-11 Score=122.61 Aligned_cols=197 Identities=14% Similarity=0.154 Sum_probs=119.8
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.+++||+..++.+..++.... ....+.|+|++|+||||||+.+++. ....+.... ..+...... ..+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~-~~~~~~~~~----~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKG--LNCETGITA-TPCGVCDNC----REIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSCS-SCCSCSHHH----HHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCC-CCCcccHHH----HHHh
Confidence 469999999999999986532 2358899999999999999999874 322211000 000000000 0000
Q ss_pred HHh-----cCCCCCCccHHHHHHHHHHH-----hcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChHH-
Q 002362 250 EAL-----DGHESRLGEFQSLIKHIYES-----VAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKSV- 318 (930)
Q Consensus 250 ~~l-----~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v- 318 (930)
... ..........+.. ..+.+. ..+++.+||+||++..+...+..+...+.....+..+|+||+....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDT-RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHH-HHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred ccCCcceEEecCcccccHHHH-HHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 000 0000000111111 122222 2356789999999876556677777777666667888888876532
Q ss_pred Hh-hhCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHhhh
Q 002362 319 AS-MMGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLM 383 (930)
Q Consensus 319 ~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~l 383 (930)
.. .......+++.+++.++.++++.+.+........ .+....|++.|+|.|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 1223468999999999999999987754322111 1336789999999999887776443
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.27 E-value=2e-11 Score=123.45 Aligned_cols=68 Identities=24% Similarity=0.418 Sum_probs=47.9
Q ss_pred CCcccCcccccCCCCCeeeccCCccccccc-ccccCCcccEEeccCCCCCccccccccccCCcceEeecCc
Q 002362 600 PLTRIPRNIERLVHLRYLNLSNQSIRKLPD-TLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGT 669 (930)
Q Consensus 600 ~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~ 669 (930)
.+..+|..+. .+|++|+|++|.|+.+|. .+..+++|++|++++|......|..+..+++|++|++++|
T Consensus 22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 4566676554 577888888887777765 5677778888888877733334666777777777777776
No 125
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.26 E-value=3.1e-11 Score=121.20 Aligned_cols=72 Identities=26% Similarity=0.362 Sum_probs=49.4
Q ss_pred CCeeeccCCcccccccccccCCcccEEeccCCCCCccccc-cccccCCcceEeecCcccccccCCc-CCCCCCCCcCC
Q 002362 614 LRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQ-GIGKLINMRHLLNYGTISLRYMPVG-IGRLTSLRTLD 689 (930)
Q Consensus 614 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~ 689 (930)
-+.++.+++.++.+|..+ ..+|++|++++|. +..+|. .+..+++|++|++++| .+..+|.. ++.+++|++|+
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEE
Confidence 357788888888888765 4689999999987 555655 4678888999988887 33444432 34444444444
No 126
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.23 E-value=5.9e-11 Score=120.93 Aligned_cols=59 Identities=20% Similarity=0.170 Sum_probs=33.1
Q ss_pred CCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCC-CCCCCCcceeeeccC
Q 002362 775 PPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPP-LGKLPSLEKLSISFM 834 (930)
Q Consensus 775 ~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~ 834 (930)
.+++|+.|++++|.+.. +|..+..+++|+.|+|++|.+....+. +..+++|+.|+|.++
T Consensus 110 ~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp TCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred cchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 34455555555555554 566666666666666666654433222 556666666666643
No 127
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.23 E-value=1.6e-11 Score=124.18 Aligned_cols=139 Identities=17% Similarity=0.204 Sum_probs=99.7
Q ss_pred cCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCccc-CcccccCCCCCee
Q 002362 539 GNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRI-PRNIERLVHLRYL 617 (930)
Q Consensus 539 ~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~L~~Lr~L 617 (930)
+.+..+|..+. ++++.|.+.++.+... .+..|..+++|++|+|++|. +..+ |..+.++++|++|
T Consensus 21 ~~l~~iP~~l~--~~l~~L~l~~n~i~~i------~~~~~~~l~~L~~L~Ls~N~-------i~~~~~~~~~~l~~L~~L 85 (220)
T 2v9t_B 21 KGLTEIPTNLP--ETITEIRLEQNTIKVI------PPGAFSPYKKLRRIDLSNNQ-------ISELAPDAFQGLRSLNSL 85 (220)
T ss_dssp SCCSSCCSSCC--TTCCEEECCSSCCCEE------CTTSSTTCTTCCEEECCSSC-------CCEECTTTTTTCSSCCEE
T ss_pred CCcCcCCCccC--cCCCEEECCCCcCCCc------CHhHhhCCCCCCEEECCCCc-------CCCcCHHHhhCCcCCCEE
Confidence 34444444332 6788888888865332 33347788889999998553 4444 6788888999999
Q ss_pred eccCCcccccccc-cccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCC-cCCCCCCCCcCCceEe
Q 002362 618 NLSNQSIRKLPDT-LCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPV-GIGRLTSLRTLDEFYV 693 (930)
Q Consensus 618 ~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~ 693 (930)
+|++|.|+.+|.. +..+++|++|++++|......|..+..+++|++|++++|. +..+|. .++.+++|++|++..+
T Consensus 86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCC
Confidence 9999988888776 5778899999999888444446678888899999998884 444554 4777888888776544
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.20 E-value=2.6e-11 Score=123.54 Aligned_cols=143 Identities=26% Similarity=0.361 Sum_probs=104.3
Q ss_pred EEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCc-ccccCC
Q 002362 534 LLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPR-NIERLV 612 (930)
Q Consensus 534 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~L~ 612 (930)
+......+..+|..+ .++|+.|.+.++.+... .+..|..+++|++|+|++| .+..+|. .+..++
T Consensus 24 v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~------~~~~~~~l~~L~~L~L~~N-------~l~~i~~~~~~~l~ 88 (229)
T 3e6j_A 24 VDCRSKRHASVPAGI--PTNAQILYLHDNQITKL------EPGVFDSLINLKELYLGSN-------QLGALPVGVFDSLT 88 (229)
T ss_dssp EECTTSCCSSCCSCC--CTTCSEEECCSSCCCCC------CTTTTTTCTTCCEEECCSS-------CCCCCCTTTTTTCT
T ss_pred eEccCCCcCccCCCC--CCCCCEEEcCCCccCcc------CHHHhhCccCCcEEECCCC-------CCCCcChhhcccCC
Confidence 333333444445433 37888999988865322 3345778889999999954 4555654 467889
Q ss_pred CCCeeeccCCcccccccc-cccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCC-cCCCCCCCCcCCc
Q 002362 613 HLRYLNLSNQSIRKLPDT-LCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPV-GIGRLTSLRTLDE 690 (930)
Q Consensus 613 ~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~ 690 (930)
+|++|+|++|.|+.+|.. +..+++|++|++++|. +..+|..+..+++|++|++++| .+..+|. .+..+++|+.|++
T Consensus 89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCEEECCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEe
Confidence 999999999998888765 5789999999999888 7788888899999999999888 4555654 4777888888776
Q ss_pred eEe
Q 002362 691 FYV 693 (930)
Q Consensus 691 ~~~ 693 (930)
..+
T Consensus 167 ~~N 169 (229)
T 3e6j_A 167 FGN 169 (229)
T ss_dssp TTS
T ss_pred eCC
Confidence 543
No 129
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.19 E-value=3.1e-11 Score=122.05 Aligned_cols=147 Identities=16% Similarity=0.141 Sum_probs=100.3
Q ss_pred EEEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCc-ccccC
Q 002362 533 HLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPR-NIERL 611 (930)
Q Consensus 533 ~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~L 611 (930)
.+.+..+.+..+|..+ ...++.|.+.++.+.... ....|..+++|++|+|++| .+..++. .++++
T Consensus 15 ~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~-----~~~~~~~l~~L~~L~L~~N-------~i~~i~~~~~~~l 80 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLE-----ATGIFKKLPQLRKINFSNN-------KITDIEEGAFEGA 80 (220)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEEC-----CCCCGGGCTTCCEEECCSS-------CCCEECTTTTTTC
T ss_pred EeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccC-----chhhhccCCCCCEEECCCC-------cCCEECHHHhCCC
Confidence 4555555555555433 345678888887643221 1223677888888888854 3445543 68888
Q ss_pred CCCCeeeccCCcccccccc-cccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCcCCc
Q 002362 612 VHLRYLNLSNQSIRKLPDT-LCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDE 690 (930)
Q Consensus 612 ~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 690 (930)
.+|++|+|++|.++.+|.. +..+++|++|++++|......|..+..+++|++|++++|......|..++.+++|++|++
T Consensus 81 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence 8888888888888877654 778888888888888844444677888888888888888444444667777888887776
Q ss_pred eEe
Q 002362 691 FYV 693 (930)
Q Consensus 691 ~~~ 693 (930)
..+
T Consensus 161 ~~N 163 (220)
T 2v70_A 161 LAN 163 (220)
T ss_dssp CSC
T ss_pred cCc
Confidence 544
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.18 E-value=2.2e-12 Score=154.35 Aligned_cols=118 Identities=22% Similarity=0.162 Sum_probs=93.9
Q ss_pred CcccCcccccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCC
Q 002362 601 LTRIPRNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIG 680 (930)
Q Consensus 601 ~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 680 (930)
+...|..+..+..|++|+|++|.+..+|..+.++++|++|+|++|. +..+|..|+.|++|++|+|++|. +..+|..|+
T Consensus 213 ~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~ 290 (727)
T 4b8c_D 213 MVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELG 290 (727)
T ss_dssp ---------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGG
T ss_pred eecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhc
Confidence 4456788999999999999999999999999999999999999998 66999999999999999999994 568999999
Q ss_pred CCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeeccc
Q 002362 681 RLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLG 725 (930)
Q Consensus 681 ~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~ 725 (930)
.|++|++|++..+.... ++..+..|++|+.|++.+|...+
T Consensus 291 ~l~~L~~L~L~~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVTT-----LPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp GGTTCSEEECCSSCCCC-----CCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCCCCEEECCCCCCCc-----cChhhhcCCCccEEeCCCCccCC
Confidence 99999999987665432 35557777777777777766543
No 131
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.18 E-value=4.8e-10 Score=113.85 Aligned_cols=184 Identities=12% Similarity=0.018 Sum_probs=116.9
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhc-CC-eEEEEEeCCCccHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRK-FD-KILWVCVSETFEEFRVAKA 247 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~-~~~wv~vs~~~~~~~~~~~ 247 (930)
.+++|++..++.+.+++... ....+.|+|++|+|||++|+.+++. .... +. ..+.+..+.......+...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDVVRHK 88 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEETTCTTCHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HhccccccceEEeccccccChHHHHHH
Confidence 46899999999999998643 2234899999999999999999873 3222 22 2344444443333222221
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChHH-Hh-hhCCc
Q 002362 248 IVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKSV-AS-MMGST 325 (930)
Q Consensus 248 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~-~~~~~ 325 (930)
+........ ...+++.+||+||++.......+.+...+.....+.++|+||+.... .. .....
T Consensus 89 ~~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 89 IKEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp HHHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 111111000 01256789999999876555556677666666667888888876531 11 11223
Q ss_pred ceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHH
Q 002362 326 NIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIG 380 (930)
Q Consensus 326 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~ 380 (930)
..+++.+++.++..+++.+.+........ .+....+++.++|.|..+..+.
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 48999999999999999887643221111 1346678899999998654443
No 132
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.17 E-value=3.6e-11 Score=131.86 Aligned_cols=87 Identities=22% Similarity=0.221 Sum_probs=47.6
Q ss_pred CCcccCcccccCCCCCeeeccCCcccccccc-cc-cCCcccEEeccCCCCCcccc-ccccccCCcceEeecCcccccccC
Q 002362 600 PLTRIPRNIERLVHLRYLNLSNQSIRKLPDT-LC-ELYNLQKLDISCCCKLKELP-QGIGKLINMRHLLNYGTISLRYMP 676 (930)
Q Consensus 600 ~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~-i~-~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~p 676 (930)
.+..+|..+. ..+++|+|++|.|+.+|.. +. ++++|++|+|++|. +..+| ..+..+++|++|++++|. +..+|
T Consensus 29 ~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~ 104 (361)
T 2xot_A 29 QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNH-LHTLD 104 (361)
T ss_dssp CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEEC
T ss_pred CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCc-CCcCC
Confidence 3455555443 2466666666666665543 33 56666666666665 44443 346666666666666663 33333
Q ss_pred C-cCCCCCCCCcCCc
Q 002362 677 V-GIGRLTSLRTLDE 690 (930)
Q Consensus 677 ~-~i~~l~~L~~L~~ 690 (930)
. .+..+++|+.|++
T Consensus 105 ~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 105 EFLFSDLQALEVLLL 119 (361)
T ss_dssp TTTTTTCTTCCEEEC
T ss_pred HHHhCCCcCCCEEEC
Confidence 2 3455555555554
No 133
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.16 E-value=2.5e-11 Score=117.15 Aligned_cols=106 Identities=25% Similarity=0.262 Sum_probs=59.2
Q ss_pred hhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcccc-cccccccCCcccEEeccCCCCCcccc--cc
Q 002362 578 FRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRK-LPDTLCELYNLQKLDISCCCKLKELP--QG 654 (930)
Q Consensus 578 ~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~L~l~~~~~~~~lp--~~ 654 (930)
+..+++|++|++++|. +..+ ..++.+++|++|++++|.++. +|..+..+++|++|++++|. +..+| ..
T Consensus 45 ~~~l~~L~~L~l~~n~-------l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 115 (168)
T 2ell_A 45 TAEFVNLEFLSLINVG-------LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEP 115 (168)
T ss_dssp CGGGGGCCEEEEESSC-------CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS-CCSSGGGGG
T ss_pred HHhCCCCCEEeCcCCC-------CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc-cCcchhHHH
Confidence 4555666666666432 2223 455566666666666666655 45555556666666666665 44444 45
Q ss_pred ccccCCcceEeecCcccccccCC----cCCCCCCCCcCCceEe
Q 002362 655 IGKLINMRHLLNYGTISLRYMPV----GIGRLTSLRTLDEFYV 693 (930)
Q Consensus 655 i~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~~~~ 693 (930)
+..+++|++|++++| .+..+|. .+..+++|+.|++..+
T Consensus 116 l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 116 LKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp GSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred HhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence 566666666666665 3344444 4555666666655544
No 134
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.15 E-value=6.1e-11 Score=114.44 Aligned_cols=135 Identities=20% Similarity=0.210 Sum_probs=113.1
Q ss_pred cCcceeEEEEEecCCc--cccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcc-
Q 002362 527 FDEKVRHLLLIVGNGA--SFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTR- 603 (930)
Q Consensus 527 ~~~~~r~l~l~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~- 603 (930)
.+..++++.+..+.+. .++..+..+++|+.|.+.++.+... ..+..+++|++|+|++|. +..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~Ls~N~-------l~~~ 86 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--------SNLPKLPKLKKLELSENR-------IFGG 86 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--------SSCCCCSSCCEEEEESCC-------CCSC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--------hhhccCCCCCEEECcCCc-------CchH
Confidence 5678999999998877 6777778899999999999975432 347889999999999664 344
Q ss_pred cCcccccCCCCCeeeccCCcccccc--cccccCCcccEEeccCCCCCccccc----cccccCCcceEeecCcccccccCC
Q 002362 604 IPRNIERLVHLRYLNLSNQSIRKLP--DTLCELYNLQKLDISCCCKLKELPQ----GIGKLINMRHLLNYGTISLRYMPV 677 (930)
Q Consensus 604 lp~~i~~L~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~----~i~~L~~L~~L~l~~~~~~~~~p~ 677 (930)
+|..++.+++|++|++++|.++.+| ..+..+++|++|++++|. +..+|. .+..+++|++|++++| ....+|.
T Consensus 87 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 87 LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 7777888999999999999999987 789999999999999998 777776 7899999999999988 4456664
Q ss_pred c
Q 002362 678 G 678 (930)
Q Consensus 678 ~ 678 (930)
.
T Consensus 165 ~ 165 (168)
T 2ell_A 165 S 165 (168)
T ss_dssp S
T ss_pred c
Confidence 3
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.14 E-value=7.4e-11 Score=114.75 Aligned_cols=131 Identities=20% Similarity=0.187 Sum_probs=95.6
Q ss_pred cccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcccc
Q 002362 547 STCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRK 626 (930)
Q Consensus 547 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~ 626 (930)
.+..+.+|+.|.+.++.+... +.+....++|++|+|++|. +..+ ..++.+++|++|+|++|.|+.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-------~~~~~~~~~L~~L~Ls~N~-------l~~~-~~l~~l~~L~~L~Ls~N~l~~ 78 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-------ENLGATLDQFDAIDFSDNE-------IRKL-DGFPLLRRLKTLLVNNNRICR 78 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-------CCGGGGTTCCSEEECCSSC-------CCEE-CCCCCCSSCCEEECCSSCCCE
T ss_pred hcCCcCCceEEEeeCCCCchh-------HHhhhcCCCCCEEECCCCC-------CCcc-cccccCCCCCEEECCCCcccc
Confidence 345677888888888864322 2223334488899998553 4445 577888889999999988888
Q ss_pred ccccc-ccCCcccEEeccCCCCCccccc--cccccCCcceEeecCcccccccCCc----CCCCCCCCcCCceEeC
Q 002362 627 LPDTL-CELYNLQKLDISCCCKLKELPQ--GIGKLINMRHLLNYGTISLRYMPVG----IGRLTSLRTLDEFYVS 694 (930)
Q Consensus 627 lp~~i-~~L~~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~L~~~~~~ 694 (930)
+|..+ ..+++|++|++++|. +..+|. .+..+++|++|++++|. +..+|.. ++.+++|+.|++..+.
T Consensus 79 ~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 79 IGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 87665 788889999998887 677776 78888889999888884 4566664 6777777777765543
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.13 E-value=2.3e-11 Score=114.80 Aligned_cols=125 Identities=27% Similarity=0.295 Sum_probs=74.6
Q ss_pred CCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcccc-ccc
Q 002362 551 VKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRK-LPD 629 (930)
Q Consensus 551 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-lp~ 629 (930)
.++++.|.+.++.... ...+..+..+++|++|++++|. +..+ ..++.+++|++|++++|.++. +|.
T Consensus 16 ~~~l~~L~l~~n~l~~-----~~~~~~~~~l~~L~~L~l~~n~-------l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~ 82 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE-----GKLEGLTDEFEELEFLSTINVG-------LTSI-ANLPKLNKLKKLELSDNRVSGGLEV 82 (149)
T ss_dssp GGGCSEEECTTCBCBT-----TBCCSCCTTCTTCCEEECTTSC-------CCCC-TTCCCCTTCCEEECCSSCCCSCTHH
T ss_pred CccCeEEEccCCcCCh-----hHHHHHHhhcCCCcEEECcCCC-------CCCc-hhhhcCCCCCEEECCCCcccchHHH
Confidence 3556666666664320 0112235566677777777543 2333 456667777777777777765 666
Q ss_pred ccccCCcccEEeccCCCCCcccc--ccccccCCcceEeecCcccccccCC----cCCCCCCCCcCCc
Q 002362 630 TLCELYNLQKLDISCCCKLKELP--QGIGKLINMRHLLNYGTISLRYMPV----GIGRLTSLRTLDE 690 (930)
Q Consensus 630 ~i~~L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~ 690 (930)
.++.+++|++|++++|. +..+| ..+..+++|++|++++| .+...|. .++.+++|+.|++
T Consensus 83 ~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred HhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence 66667777777777776 44443 56677777777777766 3444444 4566666666654
No 137
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.10 E-value=8.1e-11 Score=129.06 Aligned_cols=170 Identities=24% Similarity=0.205 Sum_probs=109.1
Q ss_pred CCeeeccCCcccccccccccCCcccEEeccCCCCCcccccc-cc-ccCCcceEeecCcccccccC-CcCCCCCCCCcCCc
Q 002362 614 LRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQG-IG-KLINMRHLLNYGTISLRYMP-VGIGRLTSLRTLDE 690 (930)
Q Consensus 614 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-i~-~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~ 690 (930)
-+.++++++.++.+|..+. .+|++|+|++|. +..+|.. +. .+++|++|++++|. +..++ ..++.+++|+.|++
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEEC
Confidence 3689999999999998764 469999999998 6666654 55 89999999999984 45555 45888888888876
Q ss_pred eEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHh
Q 002362 691 FYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLL 770 (930)
Q Consensus 691 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 770 (930)
..+.... ..+. .+..+++|+.|+|++|.+... .+
T Consensus 96 s~N~l~~----~~~~-------------------------------~~~~l~~L~~L~L~~N~i~~~-----------~~ 129 (361)
T 2xot_A 96 SSNHLHT----LDEF-------------------------------LFSDLQALEVLLLYNNHIVVV-----------DR 129 (361)
T ss_dssp CSSCCCE----ECTT-------------------------------TTTTCTTCCEEECCSSCCCEE-----------CT
T ss_pred CCCcCCc----CCHH-------------------------------HhCCCcCCCEEECCCCcccEE-----------CH
Confidence 5443221 0011 234455666666666655431 13
Q ss_pred hcCCCCCCcceEEEeeccCCCCCCccc----ccccCccEEEeeCCCCCCCCCC--CCCCCC--cceeeeccCc
Q 002362 771 EFLQPPPNLRKLLIGSYRGKTVFPPWM----MSLTNLRSLDLDDCENCEKLPP--LGKLPS--LEKLSISFMC 835 (930)
Q Consensus 771 ~~l~~~~~L~~L~l~~~~~~~~~p~~~----~~l~~L~~L~L~~~~~~~~l~~--l~~l~~--L~~L~L~~~~ 835 (930)
..+..+++|+.|+|++|.+.. +|..+ ..+++|+.|+|++|.+.. +|. +..++. |+.|+|.+|+
T Consensus 130 ~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 130 NAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCC-CCHHHHHHSCHHHHTTEECCSSC
T ss_pred HHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCc-cCHHHhhhccHhhcceEEecCCC
Confidence 345556666677777666666 55543 356667777777665443 332 445555 3566666543
No 138
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.09 E-value=2.2e-10 Score=115.75 Aligned_cols=81 Identities=17% Similarity=0.210 Sum_probs=41.2
Q ss_pred cccCCCCCeeeccCCccccccc-ccccCCcccEEeccCCCCCcccc-ccccccCCcceEeecCcccccccCCcCCCCCCC
Q 002362 608 IERLVHLRYLNLSNQSIRKLPD-TLCELYNLQKLDISCCCKLKELP-QGIGKLINMRHLLNYGTISLRYMPVGIGRLTSL 685 (930)
Q Consensus 608 i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L 685 (930)
++.+++|++|+|++|.|+.++. .+..+++|++|++++|. +..+| ..+..+++|++|++++|......|..++.+++|
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 131 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV 131 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC
T ss_pred hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC
Confidence 4555555666665555555543 45555555555555555 33332 235555555555555553222223444444444
Q ss_pred CcCC
Q 002362 686 RTLD 689 (930)
Q Consensus 686 ~~L~ 689 (930)
++|+
T Consensus 132 ~~L~ 135 (220)
T 2v70_A 132 RLLS 135 (220)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 4444
No 139
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.07 E-value=9.9e-11 Score=110.39 Aligned_cols=125 Identities=22% Similarity=0.236 Sum_probs=105.3
Q ss_pred cCcceeEEEEEecCCc--cccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcc-
Q 002362 527 FDEKVRHLLLIVGNGA--SFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTR- 603 (930)
Q Consensus 527 ~~~~~r~l~l~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~- 603 (930)
.+..++++.+..+.+. .++..+..+++|+.|.+.+|.+... ..+..+++|++|++++|. +..
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~Ls~n~-------i~~~ 79 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--------ANLPKLNKLKKLELSDNR-------VSGG 79 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--------TTCCCCTTCCEEECCSSC-------CCSC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--------hhhhcCCCCCEEECCCCc-------ccch
Confidence 4567899999888877 6677778999999999999975432 347889999999999664 444
Q ss_pred cCcccccCCCCCeeeccCCcccccc--cccccCCcccEEeccCCCCCccccc----cccccCCcceEeec
Q 002362 604 IPRNIERLVHLRYLNLSNQSIRKLP--DTLCELYNLQKLDISCCCKLKELPQ----GIGKLINMRHLLNY 667 (930)
Q Consensus 604 lp~~i~~L~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~----~i~~L~~L~~L~l~ 667 (930)
+|..++.+++|++|++++|.++.+| ..++.+++|++|++++|. +..+|. .+..+++|++|+++
T Consensus 80 ~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 80 LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 7888888999999999999999876 889999999999999998 677765 68999999999875
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.02 E-value=2.2e-10 Score=111.38 Aligned_cols=106 Identities=20% Similarity=0.269 Sum_probs=85.8
Q ss_pred hhcCCcceEEEcCCcccccCCCCCcccCcccccCC-CCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccc-
Q 002362 578 FRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLV-HLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGI- 655 (930)
Q Consensus 578 ~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i- 655 (930)
+..+..|+.|++++| .+..+|. +..+. +|++|++++|.++.+ ..++.+++|++|++++|. +..+|..+
T Consensus 15 ~~~~~~L~~L~l~~n-------~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~ 84 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-------KIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLD 84 (176)
T ss_dssp EECTTSCEEEECTTS-------CCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHH
T ss_pred cCCcCCceEEEeeCC-------CCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchh
Confidence 566889999999965 3455654 55555 999999999999988 678999999999999998 77788665
Q ss_pred cccCCcceEeecCcccccccCC--cCCCCCCCCcCCceEeC
Q 002362 656 GKLINMRHLLNYGTISLRYMPV--GIGRLTSLRTLDEFYVS 694 (930)
Q Consensus 656 ~~L~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~ 694 (930)
..+++|++|++++| .+..+|. .++.+++|+.|++..+.
T Consensus 85 ~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 85 QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred hcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC
Confidence 89999999999998 4566776 67778888887765443
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=1e-09 Score=118.72 Aligned_cols=290 Identities=12% Similarity=0.059 Sum_probs=150.5
Q ss_pred CCCccEEEEccccccccchhhhHHHHHhhc-CCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccccccc
Q 002362 551 VKRMRSLIIDYSRYFHLYLNGKILERLFRE-STSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPD 629 (930)
Q Consensus 551 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~-~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~ 629 (930)
+.+++.|.+.++- ....+.. +.. +++|++|||++|... .. ..+ -+.++.++++.+..+.|. +.
T Consensus 24 ~~~l~~L~l~g~i------~~~~~~~-l~~~l~~L~~LdLs~n~i~----~~-~~~--~~~~~~~~~~~~~~~~I~--~~ 87 (329)
T 3sb4_A 24 ANSITHLTLTGKL------NAEDFRH-LRDEFPSLKVLDISNAEIK----MY-SGK--AGTYPNGKFYIYMANFVP--AY 87 (329)
T ss_dssp HHHCSEEEEEEEE------CHHHHHH-HHHSCTTCCEEEEEEEEEC----CE-EES--SSSSGGGCCEEECTTEEC--TT
T ss_pred hCceeEEEEeccc------cHHHHHH-HHHhhccCeEEecCcceeE----Ee-cCc--cccccccccccccccccC--HH
Confidence 4567777777642 1111222 333 788999999865432 10 111 111222455555554322 12
Q ss_pred cccc--------CCcccEEeccCCCCCccccc-cccccCCcceEeecCcccccccCCcCCCCCCCCcCCceEeCCCCCcC
Q 002362 630 TLCE--------LYNLQKLDISCCCKLKELPQ-GIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRTLDEFYVSGGGGID 700 (930)
Q Consensus 630 ~i~~--------L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~ 700 (930)
.|.+ +.+|+.|++.. . +..++. .|..+++|+.|++.++....-.+..|..+.++..+............
T Consensus 88 aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~ 165 (329)
T 3sb4_A 88 AFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKN 165 (329)
T ss_dssp TTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTST
T ss_pred HhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccc
Confidence 3445 77777777777 3 555554 46777778888777663322223334444444444321100000000
Q ss_pred CCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcc
Q 002362 701 GRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLR 780 (930)
Q Consensus 701 ~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 780 (930)
......+.++..|+. .... .............-....++..+.+..+-... ........+++|+
T Consensus 166 ~i~~~~f~~~~~L~~--~i~~---~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~-----------~~~~l~~~~~~L~ 229 (329)
T 3sb4_A 166 RWEHFAFIEGEPLET--TIQV---GAMGKLEDEIMKAGLQPRDINFLTIEGKLDNA-----------DFKLIRDYMPNLV 229 (329)
T ss_dssp TTTTSCEEESCCCEE--EEEE---CTTCCHHHHHHHTTCCGGGCSEEEEEECCCHH-----------HHHHHHHHCTTCC
T ss_pred cccccccccccccce--eEEe---cCCCcHHHHHhhcccCccccceEEEeeeecHH-----------HHHHHHHhcCCCe
Confidence 000112222332220 0011 11111111111111234566777766542110 1111112367899
Q ss_pred eEEEeeccCCCCCC-cccccccCccEEEeeCCCCCCCCCC--CCCCCCcc-eeeeccCcCceEeCCccccCcccccCccc
Q 002362 781 KLLIGSYRGKTVFP-PWMMSLTNLRSLDLDDCENCEKLPP--LGKLPSLE-KLSISFMCSVKRVDNEILGIEITIAFPKL 856 (930)
Q Consensus 781 ~L~l~~~~~~~~~p-~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~-~L~L~~~~~l~~~~~~~~~~~~~~~f~~L 856 (930)
+|+|.+|.+.. +| ..|.++++|+.|+|.++ ...++. +.++++|+ .|.+.. .++.++...+.
T Consensus 230 ~l~L~~n~i~~-I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~---------- 294 (329)
T 3sb4_A 230 SLDISKTNATT-IPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFM---------- 294 (329)
T ss_dssp EEECTTBCCCE-ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTT----------
T ss_pred EEECCCCCcce-ecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhh----------
Confidence 99999888777 54 45668889999999887 444444 88888998 888875 56666654332
Q ss_pred cceeeccccccccceeeeccCCccCCCCC-CCCCCCCccEEEE
Q 002362 857 KSLTISWIIMPRLSSLTFDSCPKLKALPD-HFHQTTTLKEFNI 898 (930)
Q Consensus 857 ~~L~l~~~~lp~L~~L~l~~c~~L~~lp~-~l~~l~~L~~L~l 898 (930)
.+++|+.|.+.++ .++.++. .+.++++|+.|+.
T Consensus 295 --------~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 295 --------GCDNLRYVLATGD-KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp --------TCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEEC
T ss_pred --------CCccCCEEEeCCC-ccCccchhhhcCCcchhhhcc
Confidence 2567777777665 5777664 5777888888763
No 142
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.00 E-value=3.5e-09 Score=114.24 Aligned_cols=186 Identities=13% Similarity=0.108 Sum_probs=116.3
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcC-CeEEEEEeCCCccHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKF-DKILWVCVSETFEEFRVAKAI 248 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i 248 (930)
.+++|++..++.+..++... ....+.|+|++|+||||+|+.+++... ...+ ...+++..++...... .+++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDV-VRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHH-HHHH
Confidence 46899999999999998642 223389999999999999999987421 1111 1234444443322222 1222
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHh-cCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChH-HHhh-hCCc
Q 002362 249 VEALDGHESRLGEFQSLIKHIYESV-AGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKS-VASM-MGST 325 (930)
Q Consensus 249 ~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~ 325 (930)
++.+.... ..+ .+++.++|+||++......++.+...+.....++++|+||+... +... ....
T Consensus 93 ~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 93 IKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 22211000 011 35578999999987655556667777766666788888887643 1111 2334
Q ss_pred ceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhH-HHHHHh
Q 002362 326 NIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLA-AKIIGS 381 (930)
Q Consensus 326 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLa-i~~~~~ 381 (930)
..+++.+++.++..+++...+........ .+....|++.++|.|.. +..+..
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVKYT----NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 58999999999999999887642221111 13467789999999954 444433
No 143
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.99 E-value=2.9e-09 Score=114.91 Aligned_cols=275 Identities=16% Similarity=0.142 Sum_probs=145.4
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.+++|++..++.+..++...... ......+.|+|++|+|||++|+.+++. .. ...+++.++......++.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~i~~~--~~---~~~~~~~~~~~~~~~~l~---- 81 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKAR-KEPLEHLLLFGPPGLGKTTLAHVIAHE--LG---VNLRVTSGPAIEKPGDLA---- 81 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHH-CSCCCCCEEECCTTCCCHHHHHHHHHH--HT---CCEEEECTTTCCSHHHHH----
T ss_pred HHhhCHHHHHHHHHHHHHHHHcc-CCCCCcEEEECCCCCCHHHHHHHHHHH--hC---CCEEEEeccccCChHHHH----
Confidence 56999999998888877532110 113356889999999999999999873 22 123444444332222211
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCC------------------CCcEEEE
Q 002362 250 EALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGL------------------HRSKILV 311 (930)
Q Consensus 250 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~iiv 311 (930)
..+...+ .+..+|+||++..........+...+.... .+.++|.
T Consensus 82 -----------------~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 82 -----------------AILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp -----------------HHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred -----------------HHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 1111111 345688999997654333444444443221 2345666
Q ss_pred EcCChH-HHhhh-CC-cceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHhhhcC---
Q 002362 312 TTRKKS-VASMM-GS-TNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLMRS--- 385 (930)
Q Consensus 312 Ttr~~~-v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~l~~--- 385 (930)
||.... +...+ .- ...+++.+++.+|..+++.+.+........ .+....+++.++|.|..+..+...+..
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT----EEAALEIGRRSRGTMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHSCSCHHHHHHHHHHHTTTST
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 666432 11111 11 257999999999999999887654322111 234677888999999887766544321
Q ss_pred ---C--CCHHHHHHHHhcccc---cchhhhhhHHHHHHHhhhcCChhHHHHHhHhcCCCCCcccChHHHHH----HHHHh
Q 002362 386 ---K--ETEEEWRRILNSGLW---KVEEIEKDILSSLLLSYNDLPSKVKKCFSYCAIFPKDYNIEKDRLIT----LWMAQ 453 (930)
Q Consensus 386 ---~--~~~~~w~~~l~~~~~---~~~~~~~~i~~~l~lsy~~L~~~~k~cf~~~s~fp~~~~i~~~~Li~----~w~a~ 453 (930)
. -+.+....++..... .+...+..+...+.-.|..=|.....+-..+++ ++..+.+ +-+..
T Consensus 220 ~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi-------~~~tl~~~l~~~~i~~ 292 (324)
T 1hqc_A 220 VAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSE-------DPGTLEEVHEPYLIRQ 292 (324)
T ss_dssp TTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTS-------CHHHHHHHTHHHHHHT
T ss_pred HhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCC-------CHHHHHHHHhHHHHHh
Confidence 1 133444333322110 111111122222222222222223333333333 3333332 34567
Q ss_pred CCcCCC-cchhHHHHHHHHHH-HHHHccCCcc
Q 002362 454 GYLDTE-QDEEMESKGEEYFG-ILASRSFFQE 483 (930)
Q Consensus 454 g~i~~~-~~~~~e~~~~~~~~-~L~~~~l~~~ 483 (930)
|++... .+....+.|..||+ ++.+|+|+|+
T Consensus 293 ~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 293 GLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp TSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred cchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 888643 34567788999997 8999999885
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.97 E-value=3.5e-12 Score=126.96 Aligned_cols=87 Identities=21% Similarity=0.265 Sum_probs=44.7
Q ss_pred CcccCcccccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCC
Q 002362 601 LTRIPRNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIG 680 (930)
Q Consensus 601 ~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 680 (930)
+..+|..++.+++|++|++++|.++.+| .+..+++|++|++++|. +..+|..+..+++|++|++++| .+..+| .++
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~ 112 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN-QIASLS-GIE 112 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCC-cCCcCC-ccc
Confidence 4444445555555555555555555555 55555555555555554 4455555555555555555555 223333 344
Q ss_pred CCCCCCcCCce
Q 002362 681 RLTSLRTLDEF 691 (930)
Q Consensus 681 ~l~~L~~L~~~ 691 (930)
.+++|+.|++.
T Consensus 113 ~l~~L~~L~l~ 123 (198)
T 1ds9_A 113 KLVNLRVLYMS 123 (198)
T ss_dssp HHHHSSEEEES
T ss_pred cCCCCCEEECC
Confidence 44444444433
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.95 E-value=1.1e-09 Score=107.92 Aligned_cols=83 Identities=22% Similarity=0.228 Sum_probs=42.2
Q ss_pred cccCCCCCeeeccCCccccc-ccccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCC
Q 002362 608 IERLVHLRYLNLSNQSIRKL-PDTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLR 686 (930)
Q Consensus 608 i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 686 (930)
++.+++|++|+|++|.|+.+ |..+..+++|++|++++|......|..+..+++|++|++++|......|..++.+++|+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 55555555555555555544 44455555555555555552222223355555555555555533333344455555555
Q ss_pred cCCc
Q 002362 687 TLDE 690 (930)
Q Consensus 687 ~L~~ 690 (930)
+|++
T Consensus 130 ~L~L 133 (192)
T 1w8a_A 130 SLNL 133 (192)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 5543
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.93 E-value=1.2e-09 Score=107.86 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=82.8
Q ss_pred eEEEEEecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCccc-Cccccc
Q 002362 532 RHLLLIVGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRI-PRNIER 610 (930)
Q Consensus 532 r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~ 610 (930)
+.+.+..+.+..+|..+. .++++|.+.++.+.... ....|..+++|++|+|++|. +..+ |..+++
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~-----~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRIS-----SDGLFGRLPHLVKLELKRNQ-------LTGIEPNAFEG 76 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBC-----CSCSGGGCTTCCEEECCSSC-------CCCBCTTTTTT
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccC-----CccccccCCCCCEEECCCCC-------CCCcCHhHcCC
Confidence 345555555555555433 37788888777643221 01236677788888888543 3333 667778
Q ss_pred CCCCCeeeccCCcccccccc-cccCCcccEEeccCCCCCccccccccccCCcceEeecCcc
Q 002362 611 LVHLRYLNLSNQSIRKLPDT-LCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTI 670 (930)
Q Consensus 611 L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 670 (930)
+.+|++|+|++|.|+.+|.. +..+++|++|++++|......|..+..+++|++|++++|+
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 88888888888887776554 6778888888888887444556777788888888887774
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.90 E-value=3.4e-09 Score=104.46 Aligned_cols=100 Identities=23% Similarity=0.374 Sum_probs=52.6
Q ss_pred CcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccccccc-ccccCCcccEEeccCCCCCcccc-ccccccC
Q 002362 582 TSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPD-TLCELYNLQKLDISCCCKLKELP-QGIGKLI 659 (930)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~ 659 (930)
+.|++|+|++| .+..+|..+.++.+|++|+|++|.|+.++. .+.++++|++|++++|. +..+| ..+..++
T Consensus 31 ~~l~~L~L~~n-------~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~ 102 (193)
T 2wfh_A 31 RDVTELYLDGN-------QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLK 102 (193)
T ss_dssp TTCCEEECCSS-------CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCT
T ss_pred CCCCEEECCCC-------cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCC
Confidence 35566666632 344455555566666666666666555543 35556666666666655 33333 3455566
Q ss_pred CcceEeecCcccccccCC-cCCCCCCCCcCCc
Q 002362 660 NMRHLLNYGTISLRYMPV-GIGRLTSLRTLDE 690 (930)
Q Consensus 660 ~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~ 690 (930)
+|++|++++| .+..+|. .+..+++|+.|++
T Consensus 103 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 103 SLRLLSLHGN-DISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp TCCEEECCSS-CCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCC-CCCeeChhhhhcCccccEEEe
Confidence 6666666555 3334443 2444555555443
No 148
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.89 E-value=2.9e-08 Score=104.13 Aligned_cols=208 Identities=10% Similarity=-0.022 Sum_probs=130.2
Q ss_pred ceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhc---C-C-eEEEEEeCCCccHHHHH
Q 002362 171 EICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRK---F-D-KILWVCVSETFEEFRVA 245 (930)
Q Consensus 171 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~-~~~wv~vs~~~~~~~~~ 245 (930)
.+.||+++.++|...|...-. ......+.|+|++|+|||++|+.|++....... . . ..++|.+....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 378999999999988865432 235678899999999999999999985322111 1 1 35677777778888999
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHh---cCceEEEEEeCccccCccChhhhhhhhcc-CCCCc--EEEEEcCChH--
Q 002362 246 KAIVEALDGHESRLGEFQSLIKHIYESV---AGMCFLLVLDDVWDGNYMKWEPFFHCLKN-GLHRS--KILVTTRKKS-- 317 (930)
Q Consensus 246 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs--~iivTtr~~~-- 317 (930)
..|++++.+.........+....+.+.+ .++++++|||+++.-. .-+.+...+.. ....+ .||.++...+
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 9999999764322222223333333333 4678999999997643 22334433321 11222 2333443321
Q ss_pred ---H----HhhhCCcceEeCCCCChHHHHHHHHHHHcCCCC-----------------------------------chhh
Q 002362 318 ---V----ASMMGSTNIISIKELTEEECRLLFNKIAFSDRP-----------------------------------IEER 355 (930)
Q Consensus 318 ---v----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-----------------------------------~~~~ 355 (930)
+ ...++ ...+.+.+++.+|-.+++.+++-.... .-.+
T Consensus 177 ~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 255 (318)
T 3te6_A 177 REQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINN 255 (318)
T ss_dssp HHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCH
T ss_pred hhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCH
Confidence 1 11221 247999999999999999887633110 0134
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHhhh
Q 002362 356 EKLEQIGRKIANKCKGLPLAAKIIGSLM 383 (930)
Q Consensus 356 ~~l~~~~~~i~~~c~glPLai~~~~~~l 383 (930)
..++-++++++...|-.-.|+.++-.+.
T Consensus 256 ~ai~~~A~~vA~~~GD~R~Al~ilr~A~ 283 (318)
T 3te6_A 256 KITQLIAKNVANVSGSTEKAFKICEAAV 283 (318)
T ss_dssp HHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 5566777777777788888887776555
No 149
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.87 E-value=4.5e-09 Score=103.56 Aligned_cols=116 Identities=16% Similarity=0.252 Sum_probs=75.0
Q ss_pred ecCCccccccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccC-cccccCCCCCe
Q 002362 538 VGNGASFPVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIP-RNIERLVHLRY 616 (930)
Q Consensus 538 ~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~L~~Lr~ 616 (930)
.+.+..+|..+ .++|++|.+.++.+... +..|.++++|++|+|++|. +..++ ..|.++.+|++
T Consensus 19 ~~~l~~ip~~~--~~~l~~L~L~~n~i~~i-------p~~~~~l~~L~~L~Ls~N~-------i~~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 19 NKGLKVLPKGI--PRDVTELYLDGNQFTLV-------PKELSNYKHLTLIDLSNNR-------ISTLSNQSFSNMTQLLT 82 (193)
T ss_dssp TSCCSSCCSCC--CTTCCEEECCSSCCCSC-------CGGGGGCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCE
T ss_pred CCCCCcCCCCC--CCCCCEEECCCCcCchh-------HHHhhcccCCCEEECCCCc-------CCEeCHhHccCCCCCCE
Confidence 33444444332 35777777777764321 2346777777778777543 33443 45777777788
Q ss_pred eeccCCccccccc-ccccCCcccEEeccCCCCCccccc-cccccCCcceEeecCcc
Q 002362 617 LNLSNQSIRKLPD-TLCELYNLQKLDISCCCKLKELPQ-GIGKLINMRHLLNYGTI 670 (930)
Q Consensus 617 L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~ 670 (930)
|+|++|.|+.+|. .+..+++|++|+|++|. +..+|. .+..+++|++|++++|+
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 8887777777654 57777777888877776 555655 36677777777777763
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.86 E-value=4.5e-11 Score=118.82 Aligned_cols=105 Identities=22% Similarity=0.249 Sum_probs=57.1
Q ss_pred HhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcccccccccccCCcccEEeccCCCCCcccccccc
Q 002362 577 LFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCCKLKELPQGIG 656 (930)
Q Consensus 577 ~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~ 656 (930)
.+..+++|++|+|++| .+..+| .++++++|++|++++|.++.+|..+..+++|++|++++|. +..+| .+.
T Consensus 43 ~~~~l~~L~~L~ls~n-------~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~ 112 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-------NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIE 112 (198)
T ss_dssp HHHHTTTCSEEECSEE-------EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHH
T ss_pred HHhcCCCCCEEECCCC-------CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccc
Confidence 3555566666666633 233344 5555666666666666666665555555666666666654 44454 355
Q ss_pred ccCCcceEeecCcccccccCC--cCCCCCCCCcCCceE
Q 002362 657 KLINMRHLLNYGTISLRYMPV--GIGRLTSLRTLDEFY 692 (930)
Q Consensus 657 ~L~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~ 692 (930)
.+++|++|++++| .+..+|. .++.+++|++|++..
T Consensus 113 ~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 113 KLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp HHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECS
T ss_pred cCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecC
Confidence 5666666666555 2333332 455555566555443
No 151
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=2.6e-08 Score=107.60 Aligned_cols=182 Identities=14% Similarity=0.078 Sum_probs=115.4
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhc-C-CeEEEEEeCCCccHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRK-F-DKILWVCVSETFEEFRVAKA 247 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F-~~~~wv~vs~~~~~~~~~~~ 247 (930)
.+++|++..++.+..++... ....+.|+|++|+||||+|+.+++. .... + ...+.+..+.......+ ..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~~-~~ 95 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGINVI-RE 95 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHHTT-HH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchHHH-HH
Confidence 45899999999999988642 2334899999999999999999884 2211 1 12333443322111111 11
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHH--h-cCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChHH-Hhh-h
Q 002362 248 IVEALDGHESRLGEFQSLIKHIYES--V-AGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKSV-ASM-M 322 (930)
Q Consensus 248 i~~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~-~ 322 (930)
.+. ..... + .+++.++|+||++......+..+...+.....++++|+||....- ... .
T Consensus 96 ~~~-----------------~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 96 KVK-----------------EFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp HHH-----------------HHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHH-----------------HHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 111 11110 1 256789999999876555666677777666667888888876431 111 1
Q ss_pred CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHh
Q 002362 323 GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGS 381 (930)
Q Consensus 323 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~ 381 (930)
.....+++.+++.++...++...+......-.+ +....|++.++|.|..+..+..
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~----~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENEGLELTE----EGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTTTCEECH----HHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHCCCCHHHHHHHHH
Confidence 223478999999999999998876543322121 3366788899999986655443
No 152
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.82 E-value=7.6e-09 Score=100.54 Aligned_cols=61 Identities=23% Similarity=0.464 Sum_probs=28.7
Q ss_pred cccCCCCCeeeccCCcccccccc-cccCCcccEEeccCCCCCcccccc-ccccCCcceEeecCc
Q 002362 608 IERLVHLRYLNLSNQSIRKLPDT-LCELYNLQKLDISCCCKLKELPQG-IGKLINMRHLLNYGT 669 (930)
Q Consensus 608 i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~ 669 (930)
++.+.+|++|++++|.++.+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|
T Consensus 72 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 72 FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCC
Confidence 34455555555555555544432 3445555555555544 3344333 244455555555444
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.77 E-value=1.1e-08 Score=98.69 Aligned_cols=86 Identities=31% Similarity=0.447 Sum_probs=38.3
Q ss_pred CcccCcccccCCCCCeeeccCCccccc-ccccccCCcccEEeccCCCCCcccccc-ccccCCcceEeecCcccccccCCc
Q 002362 601 LTRIPRNIERLVHLRYLNLSNQSIRKL-PDTLCELYNLQKLDISCCCKLKELPQG-IGKLINMRHLLNYGTISLRYMPVG 678 (930)
Q Consensus 601 ~~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~ 678 (930)
+..+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++|. +..+|.. +..+++|++|++++| .+..+|..
T Consensus 24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~ 99 (174)
T 2r9u_A 24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRG 99 (174)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC-ccceeCHH
Confidence 334444332 4445555555554444 2334445555555555444 3344433 244455555555444 23333332
Q ss_pred -CCCCCCCCcCCc
Q 002362 679 -IGRLTSLRTLDE 690 (930)
Q Consensus 679 -i~~l~~L~~L~~ 690 (930)
++.+++|+.|++
T Consensus 100 ~~~~l~~L~~L~L 112 (174)
T 2r9u_A 100 AFDNLKSLTHIYL 112 (174)
T ss_dssp TTTTCTTCSEEEC
T ss_pred HhccccCCCEEEe
Confidence 444444444443
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.73 E-value=1.8e-08 Score=96.90 Aligned_cols=99 Identities=25% Similarity=0.363 Sum_probs=61.0
Q ss_pred ceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccccc-ccccccCCcccEEeccCCCCCcccccc-ccccCCc
Q 002362 584 LRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKL-PDTLCELYNLQKLDISCCCKLKELPQG-IGKLINM 661 (930)
Q Consensus 584 Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L 661 (930)
.++|++++ . .+..+|..+. .+|++|+|++|.|+.+ |..+..+++|++|+|++|. +..+|.. +..+++|
T Consensus 11 ~~~l~~s~---n----~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L 80 (170)
T 3g39_A 11 GTTVDCSG---K----SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQL 80 (170)
T ss_dssp TTEEECTT---S----CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CCEEEeCC---C----CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCC
Confidence 45666663 2 4555665553 5677777777777766 4456677777777777766 5555544 4667777
Q ss_pred ceEeecCcccccccCC-cCCCCCCCCcCCceEe
Q 002362 662 RHLLNYGTISLRYMPV-GIGRLTSLRTLDEFYV 693 (930)
Q Consensus 662 ~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~ 693 (930)
++|++++| .+..+|. .++.+++|+.|++..+
T Consensus 81 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 81 TQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 77777766 3445554 3666666666665444
No 155
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.66 E-value=2e-07 Score=102.64 Aligned_cols=195 Identities=15% Similarity=0.203 Sum_probs=113.8
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.+++|++..++.+...+.... ....+.|+|++|+||||+|+.+++.......+. ...+... .....+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---~~~~~~~----~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---ATPCGVC----DNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---SSCCSSS----HHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---CCCCccc----HHHHHHh
Confidence 358999999999999986422 235788999999999999999987321111110 0000000 0011111
Q ss_pred HH-------hcCC-CCCCccHHHHHHHHHHH-hcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChH-HH
Q 002362 250 EA-------LDGH-ESRLGEFQSLIKHIYES-VAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKS-VA 319 (930)
Q Consensus 250 ~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~ 319 (930)
.. +... .....+..++...+... ..+++.++|+||++..+...+..+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 0000 01112232222222111 135678999999987655556667777766556677777776432 21
Q ss_pred h-hhCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHH
Q 002362 320 S-MMGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIG 380 (930)
Q Consensus 320 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~ 380 (930)
. .......+++.+++.++..+++.+.+...+.... .+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~----~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHCCCCHHHHHHHH
Confidence 1 1223468999999999999999876532211111 1236678999999998776554
No 156
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.64 E-value=5.7e-08 Score=94.28 Aligned_cols=103 Identities=31% Similarity=0.421 Sum_probs=78.3
Q ss_pred CcceEEEcCCcccccCCCCCcccCc-ccccCCCCCeeeccCCcccccccc-cccCCcccEEeccCCCCCcccccc-cccc
Q 002362 582 TSLRVLEFGDWARSLQLGPLTRIPR-NIERLVHLRYLNLSNQSIRKLPDT-LCELYNLQKLDISCCCKLKELPQG-IGKL 658 (930)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-i~~L 658 (930)
+.|+.|++++| .+..+|. .++.+.+|++|++++|.++.+|.. +..+++|++|++++|. +..+|.. +..+
T Consensus 28 ~~l~~L~l~~n-------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l 99 (177)
T 2o6r_A 28 SSATRLELESN-------KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKL 99 (177)
T ss_dssp TTCSEEECCSS-------CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred CCCcEEEeCCC-------cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCC
Confidence 57888888854 3444544 467889999999999999888765 5889999999999988 5566554 6888
Q ss_pred CCcceEeecCcccccccCCc-CCCCCCCCcCCceEe
Q 002362 659 INMRHLLNYGTISLRYMPVG-IGRLTSLRTLDEFYV 693 (930)
Q Consensus 659 ~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~ 693 (930)
++|++|++++| .+..+|.. +..+++|++|++..+
T Consensus 100 ~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 100 TQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cccCEEECcCC-cceEeCHHHhcCCcccCEEEecCC
Confidence 99999999888 45566665 467888888876544
No 157
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.63 E-value=2.8e-07 Score=98.91 Aligned_cols=181 Identities=11% Similarity=0.043 Sum_probs=111.6
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCC-eEEEEEeCCCccHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFD-KILWVCVSETFEEFRVAKAI 248 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 248 (930)
.+++|++..++.+.+++... ....+.|+|++|+|||++|+.+++... ...+. ..+.+..+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-------
Confidence 45899999999998887542 223389999999999999999987311 11111 1233444332111
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHH--h-cCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChH-HHhh-hC
Q 002362 249 VEALDGHESRLGEFQSLIKHIYES--V-AGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKS-VASM-MG 323 (930)
Q Consensus 249 ~~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~ 323 (930)
....+....+... + .+++-++|+|+++.........+...+.....+.++|+||.... +... ..
T Consensus 83 -----------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 83 -----------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp -----------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred -----------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 1111111111111 1 25678999999987654455666666665556778888876543 2111 22
Q ss_pred CcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHH
Q 002362 324 STNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKII 379 (930)
Q Consensus 324 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~ 379 (930)
....+++.+++.++...++.+.+......-.+ +....+++.++|.+..+...
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~----~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVKITE----DGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCCBCH----HHHHHHHHTTTTCHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHcCCCHHHHHHH
Confidence 34589999999999999998876543321122 23567888999998865443
No 158
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.62 E-value=3.9e-08 Score=94.94 Aligned_cols=87 Identities=23% Similarity=0.394 Sum_probs=69.4
Q ss_pred CcceEEEcCCcccccCCCCCccc-CcccccCCCCCeeeccCCcccccccc-cccCCcccEEeccCCCCCcccccc-cccc
Q 002362 582 TSLRVLEFGDWARSLQLGPLTRI-PRNIERLVHLRYLNLSNQSIRKLPDT-LCELYNLQKLDISCCCKLKELPQG-IGKL 658 (930)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-i~~L 658 (930)
+.|++|+|++|. +..+ |..++++++|++|+|++|.|+.+|.. +.++++|++|+|++|. +..+|.. +..+
T Consensus 33 ~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l 104 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-------ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNL 104 (174)
T ss_dssp TTCSEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred CCCcEEEeCCCC-------ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhccc
Confidence 678999999653 4444 66788999999999999999988876 4789999999999988 6777765 8889
Q ss_pred CCcceEeecCcccccccCC
Q 002362 659 INMRHLLNYGTISLRYMPV 677 (930)
Q Consensus 659 ~~L~~L~l~~~~~~~~~p~ 677 (930)
++|++|++++|+ +...|.
T Consensus 105 ~~L~~L~L~~N~-~~c~~~ 122 (174)
T 2r9u_A 105 KSLTHIYLYNNP-WDCECR 122 (174)
T ss_dssp TTCSEEECCSSC-BCTTBG
T ss_pred cCCCEEEeCCCC-cccccc
Confidence 999999999883 344443
No 159
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.58 E-value=3.5e-07 Score=89.97 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=84.5
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHh-------cCCeEEEEEeCCCccHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKR-------KFDKILWVCVSETFEEF 242 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------~F~~~~wv~vs~~~~~~ 242 (930)
..++||+++++++.+.+... ..+.+.|+|++|+|||++|+.+++. ... .....+++.++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----- 88 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR--IINGEVPEGLKGRRVLALDMGA----- 88 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHH--HHHTCSCGGGTTCEEEEECHHH-----
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH--HHhCCCchhhcCCcEEEeeHHH-----
Confidence 46899999999999998642 3456789999999999999999884 222 112334443311
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHh--cCceEEEEEeCccccC--------ccChhhhhhhhccCCCCcEEEEE
Q 002362 243 RVAKAIVEALDGHESRLGEFQSLIKHIYESV--AGMCFLLVLDDVWDGN--------YMKWEPFFHCLKNGLHRSKILVT 312 (930)
Q Consensus 243 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivT 312 (930)
+. .. .............+.+.+ .+++.+|||||++... ......+...+.. .+..+|+|
T Consensus 89 -~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~ 157 (195)
T 1jbk_A 89 -LV-------AG-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGA 157 (195)
T ss_dssp -HH-------TT-TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEE
T ss_pred -Hh-------cc-CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEe
Confidence 10 00 001111122222222222 3567899999997642 1112233333322 23457777
Q ss_pred cCChHHHhh-------hCCcceEeCCCCChHHHHHHH
Q 002362 313 TRKKSVASM-------MGSTNIISIKELTEEECRLLF 342 (930)
Q Consensus 313 tr~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf 342 (930)
|........ ......+.+.+++.++..+++
T Consensus 158 ~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 158 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 765543211 122336889999988876654
No 160
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.56 E-value=4.9e-08 Score=105.35 Aligned_cols=285 Identities=14% Similarity=0.045 Sum_probs=156.3
Q ss_pred cceeEEEEEecCCccccccccC-CCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccC-c
Q 002362 529 EKVRHLLLIVGNGASFPVSTCG-VKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIP-R 606 (930)
Q Consensus 529 ~~~r~l~l~~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~ 606 (930)
..+.+|.+.+.-...-...+.. +++|++|+++++.+..... . ...++.++.+.+..+ .+| .
T Consensus 25 ~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~----~---~~~~~~~~~~~~~~~----------~I~~~ 87 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSG----K---AGTYPNGKFYIYMAN----------FVPAY 87 (329)
T ss_dssp HHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEE----S---SSSSGGGCCEEECTT----------EECTT
T ss_pred CceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecC----c---ccccccccccccccc----------ccCHH
Confidence 4567777765422110112222 7889999999987531100 0 112223455555532 222 3
Q ss_pred cccc--------CCCCCeeeccCCccccccc-ccccCCcccEEeccCCCCCccccccccccCCcceEeecCccc---ccc
Q 002362 607 NIER--------LVHLRYLNLSNQSIRKLPD-TLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTIS---LRY 674 (930)
Q Consensus 607 ~i~~--------L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~---~~~ 674 (930)
.|.+ +.+|+.|+|.+ .++.++. .|.++++|+.|++..|....--+..|..+.++..+....... ...
T Consensus 88 aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~ 166 (329)
T 3sb4_A 88 AFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNR 166 (329)
T ss_dssp TTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTT
T ss_pred HhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccc
Confidence 4455 89999999998 8888865 588899999999998874333344566666666665543210 011
Q ss_pred c-CCcCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeC
Q 002362 675 M-PVGIGRLTSLRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNK 753 (930)
Q Consensus 675 ~-p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 753 (930)
+ +..+..+.+|+..- .......+.......--...++..+...+. +.. .........+++|+.|+|..|.
T Consensus 167 i~~~~f~~~~~L~~~i--~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-----l~~--~~~~~l~~~~~~L~~l~L~~n~ 237 (329)
T 3sb4_A 167 WEHFAFIEGEPLETTI--QVGAMGKLEDEIMKAGLQPRDINFLTIEGK-----LDN--ADFKLIRDYMPNLVSLDISKTN 237 (329)
T ss_dssp TTTSCEEESCCCEEEE--EECTTCCHHHHHHHTTCCGGGCSEEEEEEC-----CCH--HHHHHHHHHCTTCCEEECTTBC
T ss_pred ccccccccccccceeE--EecCCCcHHHHHhhcccCccccceEEEeee-----ecH--HHHHHHHHhcCCCeEEECCCCC
Confidence 1 11122233333100 000000000000000001222222222221 111 1111111237899999999887
Q ss_pred CCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCcc-EEEeeCCCCCCCCC--CCCCCCCcceee
Q 002362 754 EEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLR-SLDLDDCENCEKLP--PLGKLPSLEKLS 830 (930)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~-~L~L~~~~~~~~l~--~l~~l~~L~~L~ 830 (930)
+... -...+..+++|+.|.+.+| +...-+..|.++++|+ .|+|.+. ...++ .+.+|++|+.|+
T Consensus 238 i~~I-----------~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~--l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 238 ATTI-----------PDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPAS--VTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp CCEE-----------CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTT--CCEECTTTTTTCTTEEEEE
T ss_pred ccee-----------cHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEccc--ceEEchhhhhCCccCCEEE
Confidence 6642 1235788999999999987 5552355677999999 9999983 33444 399999999999
Q ss_pred eccCcCceEeCCccccCcccccCcccccee
Q 002362 831 ISFMCSVKRVDNEILGIEITIAFPKLKSLT 860 (930)
Q Consensus 831 L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~ 860 (930)
+..+ .++.++...+. .+++|+.+.
T Consensus 304 l~~n-~i~~I~~~aF~-----~~~~L~~ly 327 (329)
T 3sb4_A 304 ATGD-KITTLGDELFG-----NGVPSKLIY 327 (329)
T ss_dssp ECSS-CCCEECTTTTC-----TTCCCCEEE
T ss_pred eCCC-ccCccchhhhc-----CCcchhhhc
Confidence 9643 46666655443 456666553
No 161
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.53 E-value=2.7e-07 Score=94.57 Aligned_cols=174 Identities=15% Similarity=0.099 Sum_probs=100.7
Q ss_pred Cceecch---hhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHH
Q 002362 170 EEICGRV---DEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAK 246 (930)
Q Consensus 170 ~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 246 (930)
.+|+|+. ..++.+..+... ...+.+.|+|++|+||||||+.+++. .......+.|+.+++....
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASG------DGVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHT------CSCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH-----
Confidence 3566632 445555555542 13567899999999999999999884 4333445677776542110
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccC--hhhhhhhhccC-CCC-cEEEEEcCCh------
Q 002362 247 AIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMK--WEPFFHCLKNG-LHR-SKILVTTRKK------ 316 (930)
Q Consensus 247 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~iivTtr~~------ 316 (930)
+.+. .+.+ .++-+||+||++...... .+.+...+... ..+ .++|+||+..
T Consensus 95 -~~~~------------------~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -STAL------------------LEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -CGGG------------------GTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -HHHH------------------HHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0000 0011 345699999997654322 23344433221 112 2477777632
Q ss_pred ---HHHhhhCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHH
Q 002362 317 ---SVASMMGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIG 380 (930)
Q Consensus 317 ---~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~ 380 (930)
.+...+.....+++.+++.++..+++...+...... .. .+....+++.++|.+-.+..+.
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~-~~---~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ-LP---EDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC-CC---HHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHccCCHHHHHHHH
Confidence 222222223689999999999999998876422211 11 2346678888999887665443
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.49 E-value=3.9e-06 Score=92.45 Aligned_cols=107 Identities=9% Similarity=0.122 Sum_probs=64.2
Q ss_pred cCCCCCCcceEEEeeccCC-----CCCCcccccccCccEEEeeCCCCCCCCCC--CCCCCCcceeeeccCcCceEeCCcc
Q 002362 772 FLQPPPNLRKLLIGSYRGK-----TVFPPWMMSLTNLRSLDLDDCENCEKLPP--LGKLPSLEKLSISFMCSVKRVDNEI 844 (930)
Q Consensus 772 ~l~~~~~L~~L~l~~~~~~-----~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~ 844 (930)
.+..+++|+.+.+.++... ..-+..|..+++|+.+.|.++ ...++. +.++++|+.+.|.. +++.++...
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~a 341 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPA--NVTQINFSA 341 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECT--TCCEECTTS
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECc--cccEEcHHh
Confidence 4566777777777776543 112445667788888888743 333333 77778888888753 355555433
Q ss_pred ccCcccccCccccceeeccccccccceeeeccCCccCCCC-CCCCCC-CCccEEEEecCc
Q 002362 845 LGIEITIAFPKLKSLTISWIIMPRLSSLTFDSCPKLKALP-DHFHQT-TTLKEFNIGWNC 902 (930)
Q Consensus 845 ~~~~~~~~f~~L~~L~l~~~~lp~L~~L~l~~c~~L~~lp-~~l~~l-~~L~~L~l~~nc 902 (930)
+. . + +|+.+.+.++ .+..++ ..+..+ .+++.|++..|.
T Consensus 342 F~-----~-------------~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 342 FN-----N-------------T-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp SS-----S-------------S-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CC-----C-------------C-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH
Confidence 32 1 3 5666666665 333343 334455 378899997753
No 163
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.48 E-value=2.2e-07 Score=89.25 Aligned_cols=81 Identities=27% Similarity=0.432 Sum_probs=66.4
Q ss_pred CcceEEEcCCcccccCCCCCccc-CcccccCCCCCeeeccCCcccccccc-cccCCcccEEeccCCCCCccccc-ccccc
Q 002362 582 TSLRVLEFGDWARSLQLGPLTRI-PRNIERLVHLRYLNLSNQSIRKLPDT-LCELYNLQKLDISCCCKLKELPQ-GIGKL 658 (930)
Q Consensus 582 ~~Lr~L~L~~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~-~i~~L 658 (930)
+.|++|+|++| .+..+ |..++++.+|++|+|++|.|+.+|.. +..+++|++|+|++|. +..+|. .+..+
T Consensus 30 ~~l~~L~L~~N-------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l 101 (170)
T 3g39_A 30 TTTQVLYLYDN-------QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNL 101 (170)
T ss_dssp TTCSEEECCSS-------CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred CCCcEEEcCCC-------cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCC
Confidence 67889999955 34455 66788999999999999999988775 5789999999999988 666766 47889
Q ss_pred CCcceEeecCcc
Q 002362 659 INMRHLLNYGTI 670 (930)
Q Consensus 659 ~~L~~L~l~~~~ 670 (930)
++|++|++++|+
T Consensus 102 ~~L~~L~L~~N~ 113 (170)
T 3g39_A 102 KSLTHIWLLNNP 113 (170)
T ss_dssp TTCCEEECCSSC
T ss_pred CCCCEEEeCCCC
Confidence 999999999884
No 164
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.43 E-value=3.4e-06 Score=91.86 Aligned_cols=194 Identities=11% Similarity=0.041 Sum_probs=113.9
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCC-eEEEEEeCCCccHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFD-KILWVCVSETFEEFRVAKAI 248 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 248 (930)
.+++|+++.++.+..++... ....+.|+|++|+||||+|+.+++.......+. ..+.+..+.......+ .+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTH
T ss_pred HHhhCCHHHHHHHHHHHhcC------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHH
Confidence 46899999999999998642 222389999999999999999988522111222 2334444443233222 222
Q ss_pred HHHhcCC-CCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChH-HHhh-hCCc
Q 002362 249 VEALDGH-ESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKS-VASM-MGST 325 (930)
Q Consensus 249 ~~~l~~~-~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~ 325 (930)
+..+... ....... .....-.+++-+|++|++..........+...+.......++|++|.... +... ....
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 2222110 0000000 00001123456999999977654445566666665555677777775432 1111 1123
Q ss_pred ceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHH
Q 002362 326 NIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKII 379 (930)
Q Consensus 326 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~ 379 (930)
..+++.+++.++....+.+.+......-. .+....|++.++|.|..+..+
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENVKCD----DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHTSSCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 47899999999999999887643322111 234677889999999865443
No 165
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.43 E-value=1.4e-06 Score=96.07 Aligned_cols=88 Identities=8% Similarity=0.050 Sum_probs=51.1
Q ss_pred cccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCC
Q 002362 737 ELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEK 816 (930)
Q Consensus 737 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~ 816 (930)
.+..+++|+.+.+..+...... . ..--...+..+++|+.+.|.+ .+...-...|.++++|+.|.|.++ ...
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~---~---~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~--l~~ 336 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDP---E---AMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN--VTQ 336 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCT---T---CEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT--CCE
T ss_pred HhhCCCCCCEEEeCCccccCCc---c---cEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc--ccE
Confidence 4566777777777765543100 0 000123466677788877763 344322445567788888888655 233
Q ss_pred CC--CCCCCCCcceeeeccC
Q 002362 817 LP--PLGKLPSLEKLSISFM 834 (930)
Q Consensus 817 l~--~l~~l~~L~~L~L~~~ 834 (930)
++ .+.++ +|+.+.+.++
T Consensus 337 I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCS
T ss_pred EcHHhCCCC-CCCEEEEcCC
Confidence 33 26777 7888888765
No 166
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.40 E-value=5.1e-08 Score=105.53 Aligned_cols=127 Identities=25% Similarity=0.286 Sum_probs=76.4
Q ss_pred hcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCC-CCCC--CCCCCcceeeeccCcCceEeCC-cccc
Q 002362 771 EFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEK-LPPL--GKLPSLEKLSISFMCSVKRVDN-EILG 846 (930)
Q Consensus 771 ~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~-l~~l--~~l~~L~~L~L~~~~~l~~~~~-~~~~ 846 (930)
..+.++|+|+.|.|+++.... +|. + .+++|+.|+|..|.+... +..+ ..+|+|+.|+|+.+.+.. .+. .+..
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~-~~~~~~~~ 241 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDY-GFDGDMNV 241 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGG-TCCSCGGG
T ss_pred HHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccc-ccchhHHH
Confidence 344566788888887774333 444 3 367888888877754321 1112 267888888875321100 000 0000
Q ss_pred C---cccccCccccceeeccc--------------cccccceeeeccCCccCC-----CCCCCCCCCCccEEEEecCc
Q 002362 847 I---EITIAFPKLKSLTISWI--------------IMPRLSSLTFDSCPKLKA-----LPDHFHQTTTLKEFNIGWNC 902 (930)
Q Consensus 847 ~---~~~~~f~~L~~L~l~~~--------------~lp~L~~L~l~~c~~L~~-----lp~~l~~l~~L~~L~l~~nc 902 (930)
. -....||+|+.|.+.+| .+|+|+.|+|+.| .+.. ++.++.++++|+.|++++|+
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 0 00025788888888765 4789999999876 4554 55666678899999999864
No 167
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.39 E-value=6.1e-06 Score=89.16 Aligned_cols=177 Identities=16% Similarity=0.163 Sum_probs=104.7
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.+++|++..++.+..++...... ......+.|+|++|+|||++|+.+++. .... .+.+.++.....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~~~-------- 94 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKR-NECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIEKS-------- 94 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHT-TSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCCSH--------
T ss_pred HHhCChHHHHHHHHHHHHHHHhc-CCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhccch--------
Confidence 56999999999998888643110 123456899999999999999999762 2211 233333221111
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCC------------------CCcEEEE
Q 002362 250 EALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGL------------------HRSKILV 311 (930)
Q Consensus 250 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~iiv 311 (930)
......+.. ..+..+|+||++..........+...+.... ++..+|.
T Consensus 95 -------------~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 95 -------------GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp -------------HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred -------------hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 111111111 2345689999998765444444555544321 1245666
Q ss_pred EcCChHH-Hhh-hC-CcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHH
Q 002362 312 TTRKKSV-ASM-MG-STNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKII 379 (930)
Q Consensus 312 Ttr~~~v-~~~-~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~ 379 (930)
||..... ... .. ....+++.+++.++...++.+.+........ .+....|++.+.|.|-.+..+
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCE----EKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEEC----HHHHHHHHHTTTTCHHHHHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHCcCHHHHHHH
Confidence 6654321 111 11 1358999999999999999887643222111 234667888899999655444
No 168
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.39 E-value=4.2e-06 Score=93.34 Aligned_cols=181 Identities=15% Similarity=0.132 Sum_probs=106.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCC--eEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFD--KILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVA 274 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (930)
...+.|+|++|+||||||+.+++ .....+. .++++++. .+..++...+.... . ..+.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~~-----~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEGK-----L----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHHHHHHTTC-----H----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHccc-----H----HHHHHHhc
Confidence 56799999999999999999998 4444442 34555433 33444554443321 1 12333344
Q ss_pred CceEEEEEeCccccCc--cChhhhhhhhcc-CCCCcEEEEEcCCh---------HHHhhhCCcceEeCCCCChHHHHHHH
Q 002362 275 GMCFLLVLDDVWDGNY--MKWEPFFHCLKN-GLHRSKILVTTRKK---------SVASMMGSTNIISIKELTEEECRLLF 342 (930)
Q Consensus 275 ~kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 342 (930)
.+.-+|++||++.... ...+.+...+.. ...|..||+||... .+...+.....+.+.+++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3567999999976432 122334444322 23467788888762 23333444467899999999999999
Q ss_pred HHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHhhh------cCC-CCHHHHHHHHhc
Q 002362 343 NKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLM------RSK-ETEEEWRRILNS 398 (930)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~l------~~~-~~~~~w~~~l~~ 398 (930)
.+.+...... .++ ++...|++.+.|.+-.+..+-..+ .++ -+.+.+..++..
T Consensus 273 ~~~~~~~~~~-i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 273 RKMLEIEHGE-LPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHHTCC-CCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTST
T ss_pred HHHHHHcCCC-CCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 8876421111 111 235678888999886543322111 122 255666666654
No 169
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.35 E-value=5.8e-07 Score=97.78 Aligned_cols=87 Identities=20% Similarity=0.125 Sum_probs=38.8
Q ss_pred cccCcccccCCCCCeeeccC-Ccccccc-cccccCCcccEEeccCCCCCccc-cccccccCCcceEeecCcccccccCCc
Q 002362 602 TRIPRNIERLVHLRYLNLSN-QSIRKLP-DTLCELYNLQKLDISCCCKLKEL-PQGIGKLINMRHLLNYGTISLRYMPVG 678 (930)
Q Consensus 602 ~~lp~~i~~L~~Lr~L~L~~-~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~ 678 (930)
..+|. |..+.+|++|+|++ |.|+.+| ..|++|.+|++|+|++|. +..+ |..|..|++|++|+|++| .+..+|..
T Consensus 22 ~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~ 98 (347)
T 2ifg_A 22 DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN-ALESLSWK 98 (347)
T ss_dssp TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS-CCSCCCST
T ss_pred CccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC-ccceeCHH
Confidence 34444 45555555555553 4455444 234455555555555554 2222 233445555555555544 33344433
Q ss_pred CCCCCCCCcCCce
Q 002362 679 IGRLTSLRTLDEF 691 (930)
Q Consensus 679 i~~l~~L~~L~~~ 691 (930)
+.....|+.|++.
T Consensus 99 ~~~~~~L~~l~l~ 111 (347)
T 2ifg_A 99 TVQGLSLQELVLS 111 (347)
T ss_dssp TTCSCCCCEEECC
T ss_pred HcccCCceEEEee
Confidence 3222224444433
No 170
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.34 E-value=8.7e-06 Score=85.57 Aligned_cols=184 Identities=17% Similarity=0.130 Sum_probs=101.5
Q ss_pred CCceecchhhHHHHHHHhccCCCC-------CCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccH
Q 002362 169 EEEICGRVDEKNELLSKLLCESSD-------SPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEE 241 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 241 (930)
-.+++|.+..++++.+.+...... +-...+-+.|+|++|+|||+||+.+++. ... ..+.+..+.-.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~---~~~~v~~~~~~-- 88 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNA---TFIRVVGSELV-- 88 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTC---EEEEEEGGGGC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCC---CEEEEehHHHH--
Confidence 356899999999998887432000 0123456999999999999999999873 221 22233332211
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHH-HHHHHHhcCceEEEEEeCcccc-----------CccChhhhhhhhc-----cCC
Q 002362 242 FRVAKAIVEALDGHESRLGEFQSLI-KHIYESVAGMCFLLVLDDVWDG-----------NYMKWEPFFHCLK-----NGL 304 (930)
Q Consensus 242 ~~~~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~-----~~~ 304 (930)
.. ......... ..+......++.+|+|||++.. .......+...+. ...
T Consensus 89 ------------~~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 89 ------------KK--FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp ------------CC--STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred ------------Hh--ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 00 011112222 2222333456689999999642 1111122222222 123
Q ss_pred CCcEEEEEcCChHHHh-h-h---CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCC-chhHHHH
Q 002362 305 HRSKILVTTRKKSVAS-M-M---GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKG-LPLAAKI 378 (930)
Q Consensus 305 ~gs~iivTtr~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~g-lPLai~~ 378 (930)
.+..||.||....... . . .-...+.+.+.+.++..++|...+..... ..... ...+++.+.| .|-.+..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHH
Confidence 4567888887543211 1 1 11347899999999999999887654321 11112 3556777776 4434433
No 171
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=6.2e-06 Score=89.82 Aligned_cols=195 Identities=12% Similarity=0.079 Sum_probs=106.3
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhc------CC---------------
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRK------FD--------------- 228 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~--------------- 228 (930)
.+++|.+...+.+..++... +.... +.|+|+.|+||||+|+.++.. .... ++
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~----~~~~~-~ll~Gp~G~GKTtl~~~la~~--l~~~~~g~i~~~~~~~~~~~~~~~~~~ 86 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQP----RDLPH-LLLYGPNGTGKKTRCMALLES--IFGPGVYRLKIDVRQFVTASNRKLELN 86 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCT----TCCCC-EEEECSTTSSHHHHHHTHHHH--HSCTTCCC------------------C
T ss_pred HHhcCCHHHHHHHHHHHhhC----CCCCe-EEEECCCCCCHHHHHHHHHHH--HcCCCCCeEEecceeecccccccceee
Confidence 46899999888888877221 11223 899999999999999988762 1100 00
Q ss_pred -----eEEEEEeCCCc-cHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhcc
Q 002362 229 -----KILWVCVSETF-EEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKN 302 (930)
Q Consensus 229 -----~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 302 (930)
..+.+..+... ......+++++.+..... ..... .+ ..+.+++-++|+|++..-+......+...+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 87 VVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp CEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred eecccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 01111111100 000012222222211100 00000 00 00233566999999987655555666666665
Q ss_pred CCCCcEEEEEcCCh-HHHhh-hCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHH
Q 002362 303 GLHRSKILVTTRKK-SVASM-MGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIG 380 (930)
Q Consensus 303 ~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~ 380 (930)
...+..+|++|... .+... ......+++.+++.++..+++.+.+......-.. .+....|++.++|.+-.+..+.
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHHH
Confidence 55567777777653 22211 2234689999999999999998876432211110 1236778889999887654443
No 172
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.28 E-value=1.6e-05 Score=87.79 Aligned_cols=302 Identities=11% Similarity=0.048 Sum_probs=143.2
Q ss_pred ccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccC-cccccCCCCCeeeccCCcc
Q 002362 546 VSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIP-RNIERLVHLRYLNLSNQSI 624 (930)
Q Consensus 546 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i 624 (930)
.++.+|.+|+++.+..+ .. .+....|.+|.+|+.++|.+ .+..++ ..+.++..|+.+.+..+ +
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~------~I~~~aF~~c~~L~~i~lp~--------~l~~I~~~aF~~c~~L~~i~~p~~-l 128 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VR------EIGEFAFENCSKLEIINIPD--------SVKMIGRCTFSGCYALKSILLPLM-L 128 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CC------EECTTTTTTCTTCCEECCCT--------TCCEECTTTTTTCTTCCCCCCCTT-C
T ss_pred HHhhCCCCceEEEeCCC-cc------CcchhHhhCCCCCcEEEeCC--------CceEccchhhcccccchhhcccCc-e
Confidence 45777888888888643 11 11244588888899888863 233343 34566777777666543 3
Q ss_pred cccc-cccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccC-CcCCCCCCCCcCCceEeCCCCCcCCC
Q 002362 625 RKLP-DTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMP-VGIGRLTSLRTLDEFYVSGGGGIDGR 702 (930)
Q Consensus 625 ~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~ 702 (930)
..++ ..+.++..+......... ..-...+..+++|+.+.+..+ ...++ ..+..+.+|+.+.+... +...
T Consensus 129 ~~i~~~aF~~~~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-----~~~I 199 (394)
T 4fs7_A 129 KSIGVEAFKGCDFKEITIPEGVT--VIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-----LKII 199 (394)
T ss_dssp CEECTTTTTTCCCSEEECCTTCC--EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-----CCEE
T ss_pred eeecceeeecccccccccCcccc--ccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-----ceEe
Confidence 3332 223333333322222211 111234566777777777544 22333 33556666766654211 0001
Q ss_pred cccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCccchHHHhhcCCCCCCcceE
Q 002362 703 KACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNEDDQLLLEFLQPPPNLRKL 782 (930)
Q Consensus 703 ~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 782 (930)
....+..+..|+.+....... .+.. ......+|+.+.+..+. ... -...+..+.+|+.+
T Consensus 200 ~~~~F~~~~~L~~i~~~~~~~--~i~~-------~~~~~~~l~~i~ip~~~-~~i-----------~~~~f~~~~~l~~~ 258 (394)
T 4fs7_A 200 RDYCFAECILLENMEFPNSLY--YLGD-------FALSKTGVKNIIIPDSF-TEL-----------GKSVFYGCTDLESI 258 (394)
T ss_dssp CTTTTTTCTTCCBCCCCTTCC--EECT-------TTTTTCCCCEEEECTTC-CEE-----------CSSTTTTCSSCCEE
T ss_pred CchhhccccccceeecCCCce--Eeeh-------hhcccCCCceEEECCCc-eec-----------ccccccccccceeE
Confidence 122344445554443221110 0000 11223455555553211 000 01123445556666
Q ss_pred EEeeccCCCCCCcccccccCccEEEeeCCCCCCCCCCCCCCCCcceeeeccCcCceEeCCccccCcccccCccccceeec
Q 002362 783 LIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLPPLGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTIS 862 (930)
Q Consensus 783 ~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~ 862 (930)
.+..+...- ....+..+..|+.+.+....... ..+..+.+|+.+.+.. +++.++...+. .+.+|+.+.+.
T Consensus 259 ~~~~~~~~i-~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~--~i~~I~~~aF~-----~c~~L~~i~lp 328 (394)
T 4fs7_A 259 SIQNNKLRI-GGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLD--SVKFIGEEAFE-----SCTSLVSIDLP 328 (394)
T ss_dssp EECCTTCEE-CSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECT--TCCEECTTTTT-----TCTTCCEECCC
T ss_pred EcCCCccee-eccccccccccceeccCceeecc--cccccccccccccccc--ccceechhhhc-----CCCCCCEEEeC
Confidence 555443211 23333445555555544332110 1144455555555532 24444433222 34455555443
Q ss_pred cc----------cccccceeeeccCCccCCCC-CCCCCCCCccEEEEecCchhh
Q 002362 863 WI----------IMPRLSSLTFDSCPKLKALP-DHFHQTTTLKEFNIGWNCGLL 905 (930)
Q Consensus 863 ~~----------~lp~L~~L~l~~c~~L~~lp-~~l~~l~~L~~L~l~~nc~~l 905 (930)
.. .+.+|+.+.|..+ ++.++ ..+.+|++|+.+++..+....
T Consensus 329 ~~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~~~~~ 380 (394)
T 4fs7_A 329 YLVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKRLEQY 380 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGGGGGG
T ss_pred CcccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCCCEEh
Confidence 22 3566777776543 55554 356788999999998764443
No 173
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.27 E-value=1.6e-05 Score=86.96 Aligned_cols=194 Identities=13% Similarity=0.089 Sum_probs=104.2
Q ss_pred CceecchhhHHH---HHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEe----CCCccHH
Q 002362 170 EEICGRVDEKNE---LLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCV----SETFEEF 242 (930)
Q Consensus 170 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v----s~~~~~~ 242 (930)
++++|++..++. +.+.+.... ...+.+.|+|++|+|||++|+.+++. ..... ..+.+.. +......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~--l~~~~-~~~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDT-PFTAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH--HCSSC-CEEEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH--hcccC-Ccccccchhhhhcccchh
Confidence 569999988766 444444321 12368999999999999999999883 32211 1222221 1223333
Q ss_pred HHHHHHHHHhcC---------------------CC-------CC-----CccHHHHHHHHHHH--hcCc----eEEEEEe
Q 002362 243 RVAKAIVEALDG---------------------HE-------SR-----LGEFQSLIKHIYES--VAGM----CFLLVLD 283 (930)
Q Consensus 243 ~~~~~i~~~l~~---------------------~~-------~~-----~~~~~~~~~~l~~~--l~~k----r~LlVlD 283 (930)
..+.+......+ .. .. ..+........... ..++ +.+|++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 344333332110 00 00 11111222222221 1233 3499999
Q ss_pred CccccCccChhhhhhhhccCCCCcEEEEEcCC-----------------hHHHhhhCCcceEeCCCCChHHHHHHHHHHH
Q 002362 284 DVWDGNYMKWEPFFHCLKNGLHRSKILVTTRK-----------------KSVASMMGSTNIISIKELTEEECRLLFNKIA 346 (930)
Q Consensus 284 dv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-----------------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 346 (930)
++..........+...+...... .++++|.. ..+.+ ....+++.+++.++..+++.+.+
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s---R~~~i~~~~~~~~e~~~il~~~~ 272 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD---RLLIVSTTPYSEKDTKQILRIRC 272 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT---TEEEEEECCCCHHHHHHHHHHHH
T ss_pred hccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh---hccEEEecCCCHHHHHHHHHHHH
Confidence 99876555555566555544333 34444431 12222 23458999999999999998876
Q ss_pred cCCCCchhhHHHHHHHHHHHHHcC-CchhHHHH
Q 002362 347 FSDRPIEEREKLEQIGRKIANKCK-GLPLAAKI 378 (930)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~i~~~c~-glPLai~~ 378 (930)
......-. .+....|++.+. |.|-.+..
T Consensus 273 ~~~~~~~~----~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 273 EEEDVEMS----EDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp HHTTCCBC----HHHHHHHHHHHHHSCHHHHHH
T ss_pred HHcCCCCC----HHHHHHHHHHhcCCCHHHHHH
Confidence 43222111 223566777886 77765443
No 174
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.26 E-value=8.2e-06 Score=90.72 Aligned_cols=173 Identities=19% Similarity=0.243 Sum_probs=100.6
Q ss_pred CceecchhhH---HHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCC-ccHHHHH
Q 002362 170 EEICGRVDEK---NELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSET-FEEFRVA 245 (930)
Q Consensus 170 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~ 245 (930)
.+++|.+..+ ..+...+.. .....+.|+|++|+||||||+.+++. .... ++.++.. .....+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~------~~~~~vLL~GppGtGKTtlAr~ia~~--~~~~-----f~~l~a~~~~~~~i- 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEA------GHLHSMILWGPPGTGKTTLAEVIARY--ANAD-----VERISAVTSGVKEI- 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHH------TCCCEEEEECSTTSSHHHHHHHHHHH--TTCE-----EEEEETTTCCHHHH-
T ss_pred HHhCCcHHHHhchHHHHHHHHc------CCCcEEEEECCCCCcHHHHHHHHHHH--hCCC-----eEEEEeccCCHHHH-
Confidence 4688888777 666666653 24467999999999999999999873 2222 2333221 122211
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHH-HhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEE-EEcCChH--H-Hh
Q 002362 246 KAIVEALDGHESRLGEFQSLIKHIYE-SVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKIL-VTTRKKS--V-AS 320 (930)
Q Consensus 246 ~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~--v-~~ 320 (930)
+.++ ..... ...+++.+|++|+++.-.....+.+...+..+ ...+| .||.+.. + ..
T Consensus 92 r~~~-----------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 92 REAI-----------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSA 152 (447)
T ss_dssp HHHH-----------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHH
T ss_pred HHHH-----------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHH
Confidence 1111 11111 12467789999999876655566677666653 23333 3555542 1 11
Q ss_pred hhCCcceEeCCCCChHHHHHHHHHHHcCC------CCchhhHHHHHHHHHHHHHcCCchhHHHH
Q 002362 321 MMGSTNIISIKELTEEECRLLFNKIAFSD------RPIEEREKLEQIGRKIANKCKGLPLAAKI 378 (930)
Q Consensus 321 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~------~~~~~~~~l~~~~~~i~~~c~glPLai~~ 378 (930)
......++.+.+++.++...++.+.+... ...... .+....|++.++|.+-.+..
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~---~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLP---DETRRAIAELVNGDARRALN 213 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECC---HHHHHHHHHHHCSCHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCC---HHHHHHHHHHCCCCHHHHHH
Confidence 22335588999999999999998876431 111111 23466677888998765543
No 175
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.23 E-value=1.7e-05 Score=84.48 Aligned_cols=162 Identities=15% Similarity=0.083 Sum_probs=90.8
Q ss_pred ceecchhhHHHHHHHhccCC---------CCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccH
Q 002362 171 EICGRVDEKNELLSKLLCES---------SDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEE 241 (930)
Q Consensus 171 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 241 (930)
+++|.+..++.+.+.+.... -........+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 47888888888776653210 000124557999999999999999999884222222222223333311
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCcccc---------CccChhhhhhhhccCCCCcEEEEE
Q 002362 242 FRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDG---------NYMKWEPFFHCLKNGLHRSKILVT 312 (930)
Q Consensus 242 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivT 312 (930)
.+..... ..........+... +.-+|++|+++.- .......+...+.....+..||+|
T Consensus 109 ---------~l~~~~~-g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYI-GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSST-TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhcc-cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 0111000 01111222222222 2349999999743 222334566666666566788888
Q ss_pred cCChHHHhh--hC------CcceEeCCCCChHHHHHHHHHHHcC
Q 002362 313 TRKKSVASM--MG------STNIISIKELTEEECRLLFNKIAFS 348 (930)
Q Consensus 313 tr~~~v~~~--~~------~~~~~~l~~L~~~~~~~lf~~~~~~ 348 (930)
|........ .. ....+++.+++.++..+++...+..
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 865432111 01 1368899999999999999887643
No 176
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=6.9e-06 Score=93.85 Aligned_cols=197 Identities=15% Similarity=0.203 Sum_probs=108.9
Q ss_pred CceecchhhHHHHHHHhccCC-----------CCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCC
Q 002362 170 EEICGRVDEKNELLSKLLCES-----------SDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSET 238 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~-----------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 238 (930)
.+++|++..++++..++.... .++....+.+.|+|++|+||||+|+.+++. . .+ .++.+.++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l--~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--L--GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--T--TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--c--CC-CEEEEeCCCc
Confidence 569999999999999986411 000123578999999999999999999873 2 12 2445555554
Q ss_pred ccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccC---hhhhhhhhccCCCCcEEEEEcCC
Q 002362 239 FEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMK---WEPFFHCLKNGLHRSKILVTTRK 315 (930)
Q Consensus 239 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~---~~~l~~~l~~~~~gs~iivTtr~ 315 (930)
.... +....+........-..-...... .....+++.+||+|+++...... +..+...+... +..||+++..
T Consensus 114 ~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~ 188 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNE 188 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESC
T ss_pred chHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 4333 222222221111000000000000 00123667899999997643222 23444444432 2335555443
Q ss_pred hH---HHhhhCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCC-chhHHHHHH
Q 002362 316 KS---VASMMGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKG-LPLAAKIIG 380 (930)
Q Consensus 316 ~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~g-lPLai~~~~ 380 (930)
.. +.........+++.+++.++..+++.+.+......-.+ +....|++.++| ++-++..+.
T Consensus 189 ~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~----~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 189 RNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP----NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT----THHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHcCCcHHHHHHHHH
Confidence 22 22222234579999999999999998766432211111 235678888999 445555554
No 177
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.22 E-value=1.8e-05 Score=81.99 Aligned_cols=187 Identities=16% Similarity=0.092 Sum_probs=98.6
Q ss_pred CceecchhhHHHHHHHhc---cCCC---CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHH
Q 002362 170 EEICGRVDEKNELLSKLL---CESS---DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFR 243 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 243 (930)
.+++|.+..++.+.+++. .+.. -+....+.+.|+|++|+|||++|+.+++. ... ..+.+.++.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~---~~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQV---PFLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTC---CEEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEechHHHHhh--
Confidence 468899887777765542 1110 00123456889999999999999999873 222 2344444432110
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccC------------ccChh---hhhhhhcc--CCCC
Q 002362 244 VAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGN------------YMKWE---PFFHCLKN--GLHR 306 (930)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~~~~~---~l~~~l~~--~~~g 306 (930)
........+...+.........+|++|+++.-. ..... .+...+.. ...+
T Consensus 79 -------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 79 -------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp -------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred -------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 000111122222333334567899999997531 11112 22222222 1234
Q ss_pred cEEEEEcCChHHH-hh-hC---CcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchh-HHHHH
Q 002362 307 SKILVTTRKKSVA-SM-MG---STNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPL-AAKII 379 (930)
Q Consensus 307 s~iivTtr~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPL-ai~~~ 379 (930)
..||.||...... .. .. -...+.+...+.++..+++...+....... .. ......+++.+.|.+- .+..+
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~-~~--~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ-SS--TFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB-TH--HHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc-ch--hhHHHHHHHHCCCCCHHHHHHH
Confidence 5677777654321 11 11 135788999999999999988764322211 11 1124678888888754 44433
No 178
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.20 E-value=1.4e-05 Score=88.28 Aligned_cols=305 Identities=11% Similarity=0.063 Sum_probs=143.0
Q ss_pred ceeEEEEEecCCccc-cccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccC-cc
Q 002362 530 KVRHLLLIVGNGASF-PVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIP-RN 607 (930)
Q Consensus 530 ~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~ 607 (930)
.++.+.+. +.+..+ ...+.+|.+|+++.+..+- . . +....|.++..|+.+.+..+ +..+. ..
T Consensus 72 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~l-~---~---I~~~aF~~c~~L~~i~~p~~--------l~~i~~~a 135 (394)
T 4fs7_A 72 KVTEIKIP-STVREIGEFAFENCSKLEIINIPDSV-K---M---IGRCTFSGCYALKSILLPLM--------LKSIGVEA 135 (394)
T ss_dssp TEEEEECC-TTCCEECTTTTTTCTTCCEECCCTTC-C---E---ECTTTTTTCTTCCCCCCCTT--------CCEECTTT
T ss_pred CceEEEeC-CCccCcchhHhhCCCCCcEEEeCCCc-e---E---ccchhhcccccchhhcccCc--------eeeeccee
Confidence 45555553 223333 3567889999999986542 1 1 12345788888888777632 22222 22
Q ss_pred cccCCCCCeeeccCCccccc-ccccccCCcccEEeccCCCCCcccc-ccccccCCcceEeecCcccccccC-CcCCCCCC
Q 002362 608 IERLVHLRYLNLSNQSIRKL-PDTLCELYNLQKLDISCCCKLKELP-QGIGKLINMRHLLNYGTISLRYMP-VGIGRLTS 684 (930)
Q Consensus 608 i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~ 684 (930)
+.++..+....... +..+ ...+.++.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +..++ ..+..+..
T Consensus 136 F~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 136 FKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECIL 209 (394)
T ss_dssp TTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTT
T ss_pred eecccccccccCcc--ccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccc
Confidence 33333222222111 2222 234667778888877654 33343 34567777887777654 23333 34566666
Q ss_pred CCcCCceEeCCCCCcCCCcccccccccCCCcCCeeeeecccCCCChhhhhhccccCCCCCCeeEEEeeCCCCCCcCCCcc
Q 002362 685 LRTLDEFYVSGGGGIDGRKACRLESLRSLELLQVCGIRRLGNVTDVGEAKRLELDKMKNLSCLKLLFNKEEGDGQRRKNE 764 (930)
Q Consensus 685 L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~ 764 (930)
|+.+.+...... ++........|+.+.+... ...+. ...+..+..|+.+.+..+...-
T Consensus 210 L~~i~~~~~~~~------i~~~~~~~~~l~~i~ip~~--~~~i~------~~~f~~~~~l~~~~~~~~~~~i-------- 267 (394)
T 4fs7_A 210 LENMEFPNSLYY------LGDFALSKTGVKNIIIPDS--FTELG------KSVFYGCTDLESISIQNNKLRI-------- 267 (394)
T ss_dssp CCBCCCCTTCCE------ECTTTTTTCCCCEEEECTT--CCEEC------SSTTTTCSSCCEEEECCTTCEE--------
T ss_pred cceeecCCCceE------eehhhcccCCCceEEECCC--ceecc------cccccccccceeEEcCCCccee--------
Confidence 666653211100 0111112222332221100 00000 0134456666766665432110
Q ss_pred chHHHhhcCCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCC--CCCCCCCcceeeeccCcCceEeCC
Q 002362 765 DDQLLLEFLQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLP--PLGKLPSLEKLSISFMCSVKRVDN 842 (930)
Q Consensus 765 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~ 842 (930)
....+..+..++.+......+. ...+..+.+|+.+.+.++ ...++ .+.++++|+.+.|.. .++.++.
T Consensus 268 ----~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~ 336 (394)
T 4fs7_A 268 ----GGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGK 336 (394)
T ss_dssp ----CSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECT
T ss_pred ----eccccccccccceeccCceeec---cccccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhH
Confidence 0112334445555444333211 122334555665555443 12222 255555566555532 2444443
Q ss_pred ccccCcccccCccccceeeccc----------cccccceeeeccCCccCCCCCCCCCCCCccEE
Q 002362 843 EILGIEITIAFPKLKSLTISWI----------IMPRLSSLTFDSCPKLKALPDHFHQTTTLKEF 896 (930)
Q Consensus 843 ~~~~~~~~~~f~~L~~L~l~~~----------~lp~L~~L~l~~c~~L~~lp~~l~~l~~L~~L 896 (930)
..+. .+.+|+.+.+..+ .+++|+.+.|... ++.+...+.++++|+.+
T Consensus 337 ~aF~-----~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 337 RSFR-----GCTSLSNINFPLSLRKIGANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTTT-----TCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred Hhcc-----CCCCCCEEEECccccEehHHHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 3322 3445555544332 3566666666542 44444556677777765
No 179
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.17 E-value=2.2e-05 Score=84.23 Aligned_cols=170 Identities=12% Similarity=0.083 Sum_probs=102.5
Q ss_pred hhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHH--------------------hcCCeEEEEEe
Q 002362 176 VDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVK--------------------RKFDKILWVCV 235 (930)
Q Consensus 176 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~v 235 (930)
++..+.+...+.. +.-...+.++|+.|+||||+|+.+.+...-. .|++ ..++..
T Consensus 8 ~~~~~~l~~~i~~-----~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQA-----GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHT-----TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHc-----CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 3455666666643 2234579999999999999999987631100 0122 222222
Q ss_pred CCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh-----cCceEEEEEeCccccCccChhhhhhhhccCCCCcEEE
Q 002362 236 SETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESV-----AGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKIL 310 (930)
Q Consensus 236 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 310 (930)
.. .......++... +.+.+ .+++-++|+|+++.......+.+...+-....++.+|
T Consensus 82 ~~------------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp CT------------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred cc------------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 10 001112222222 22222 2566799999998766555566777776666667777
Q ss_pred EEcCChH-HHhh-hCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHH
Q 002362 311 VTTRKKS-VASM-MGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKII 379 (930)
Q Consensus 311 vTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~ 379 (930)
++|.+.+ +... ......+++.++++++..+++.+.. .. .+ +.+..+++.++|.|..+..+
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~--~~---~~----~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV--TM---SQ----DALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC--CC---CH----HHHHHHHHHTTTCHHHHHHT
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc--CC---CH----HHHHHHHHHcCCCHHHHHHH
Confidence 7766542 2222 2335689999999999999998875 11 11 22567889999999766544
No 180
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.17 E-value=1.7e-05 Score=85.11 Aligned_cols=156 Identities=20% Similarity=0.172 Sum_probs=88.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcC
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAG 275 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 275 (930)
....+.|+|++|+||||||+.+++. ....-..++++++. .+...+...+... .... +.+.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~~------~~~~~~~~~~~~~-----~~~~----~~~~~~- 97 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSAD------DFAQAMVEHLKKG-----TINE----FRNMYK- 97 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEHH------HHHHHHHHHHHHT-----CHHH----HHHHHH-
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEHH------HHHHHHHHHHHcC-----cHHH----HHHHhc-
Confidence 3457899999999999999999984 32222234555432 3333444333211 1111 222222
Q ss_pred ceEEEEEeCccccCcc--Chhhhhhhhcc-CCCCcEEEEEcCCh---------HHHhhhCCcceEeCCCCChHHHHHHHH
Q 002362 276 MCFLLVLDDVWDGNYM--KWEPFFHCLKN-GLHRSKILVTTRKK---------SVASMMGSTNIISIKELTEEECRLLFN 343 (930)
Q Consensus 276 kr~LlVlDdv~~~~~~--~~~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 343 (930)
+.-+|++||+...... ..+.+...+.. ...|..||+||... .+...+.....+++++ +.++..+++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 3569999999764321 12334433322 12355788877642 2233333446799999 9999999998
Q ss_pred HHHcCCCCchhhHHHHHHHHHHHHHcCCchhH
Q 002362 344 KIAFSDRPIEEREKLEQIGRKIANKCKGLPLA 375 (930)
Q Consensus 344 ~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLa 375 (930)
..+......- + .++...|++.+ |..-.
T Consensus 177 ~~~~~~~~~l-~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 177 EKLKEFNLEL-R---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHTTCCC-C---HHHHHHHHHHC-SSHHH
T ss_pred HHHHhcCCCC-C---HHHHHHHHHhC-CCHHH
Confidence 8774322211 1 23356677777 66543
No 181
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.13 E-value=1.9e-05 Score=84.68 Aligned_cols=177 Identities=16% Similarity=0.107 Sum_probs=102.7
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
++++|.+..++.+..++... ....++.+.|++|+|||++|+.+++. .. ...+.+..+.. ... ..+.++
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~-----~~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~~~-~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG-----KIPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-KID-FVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT-----CCCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-CHH-HHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-CHH-HHHHHH
Confidence 56899999999999998742 23467888899999999999999873 21 23444554432 222 112211
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccC-ccChhhhhhhhccCCCCcEEEEEcCChHH-Hhh-hCCcc
Q 002362 250 EALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGN-YMKWEPFFHCLKNGLHRSKILVTTRKKSV-ASM-MGSTN 326 (930)
Q Consensus 250 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~-~~~~~ 326 (930)
..+.... ...+++-++|+||++... ....+.+...+.....+.++|+||....- ... .....
T Consensus 94 ~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 94 TNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp HHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred HHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 1110000 012467899999997754 44445555555544456778888876431 111 11135
Q ss_pred eEeCCCCChHHHHHHHHH-------HHcCCCCchhhHHHHHHHHHHHHHcCCchhHH
Q 002362 327 IISIKELTEEECRLLFNK-------IAFSDRPIEEREKLEQIGRKIANKCKGLPLAA 376 (930)
Q Consensus 327 ~~~l~~L~~~~~~~lf~~-------~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai 376 (930)
.+++++++.++..+++.. .+......-.. .+....|++.++|.+-.+
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHH
Confidence 799999998885443322 22111110111 144677888898877643
No 182
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.11 E-value=2.7e-05 Score=81.11 Aligned_cols=170 Identities=19% Similarity=0.189 Sum_probs=89.8
Q ss_pred ceecchhhHHHHHH-------HhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHH
Q 002362 171 EICGRVDEKNELLS-------KLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFR 243 (930)
Q Consensus 171 ~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 243 (930)
.++|.....++++. .+.... ......+.|+|++|+|||+||+.+++. . ... .+.+..+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~--~--~~~-~~~i~~~~~----- 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE--S--NFP-FIKICSPDK----- 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH--H--TCS-EEEEECGGG-----
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH--h--CCC-EEEEeCHHH-----
Confidence 46777766666655 232111 235678999999999999999999883 2 222 222322211
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCcccc------CccChhh----hhhhhcc---CCCCcEEE
Q 002362 244 VAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDG------NYMKWEP----FFHCLKN---GLHRSKIL 310 (930)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~------~~~~~~~----l~~~l~~---~~~gs~ii 310 (930)
+.+. ........+...+......+..+|+||+++.. ....-.. +...+.. ......||
T Consensus 101 --------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 101 --------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp --------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred --------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 0000 00001112222333334466789999998652 1111112 2222221 22234567
Q ss_pred EEcCChHHHhh---hCC-cceEeCCCCCh-HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCC
Q 002362 311 VTTRKKSVASM---MGS-TNIISIKELTE-EECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKG 371 (930)
Q Consensus 311 vTtr~~~v~~~---~~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~g 371 (930)
.||........ .+. ...+++.++++ ++...++.+.. . ... +....|++.+.|
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~~~----~~~~~l~~~~~g 228 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-FKD----KERTTIAQQVKG 228 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-SCH----HHHHHHHHHHTT
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-CCH----HHHHHHHHHhcC
Confidence 77877654332 122 45789999988 66666665531 1 111 225667777877
No 183
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.09 E-value=6.2e-06 Score=80.33 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=38.0
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhch
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
..++||+.+++.+.+.+... ..+.+.|+|++|+||||||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998642 3456789999999999999999873
No 184
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.08 E-value=4.2e-06 Score=90.86 Aligned_cols=84 Identities=19% Similarity=0.266 Sum_probs=53.6
Q ss_pred hhcCCcceEEEcCC-cccccCCCCCcccC-cccccCCCCCeeeccCCccccccc-ccccCCcccEEeccCCCCCcccccc
Q 002362 578 FRESTSLRVLEFGD-WARSLQLGPLTRIP-RNIERLVHLRYLNLSNQSIRKLPD-TLCELYNLQKLDISCCCKLKELPQG 654 (930)
Q Consensus 578 ~~~~~~Lr~L~L~~-~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~ 654 (930)
+..+++|+.|+|++ | .+..+| ..|++|.+|++|+|++|.|+.+|. .|.+|++|++|+|++|. +..+|..
T Consensus 27 l~~~~~L~~L~l~~~n-------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~ 98 (347)
T 2ifg_A 27 LPGAENLTELYIENQQ-------HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWK 98 (347)
T ss_dssp SCSCSCCSEEECCSCS-------SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCST
T ss_pred CCCCCCeeEEEccCCC-------CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHH
Confidence 55666677777763 3 344444 456777777777777777776644 45677777777777776 5566655
Q ss_pred ccccCCcceEeecCc
Q 002362 655 IGKLINMRHLLNYGT 669 (930)
Q Consensus 655 i~~L~~L~~L~l~~~ 669 (930)
+....+|+.|++.+|
T Consensus 99 ~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 99 TVQGLSLQELVLSGN 113 (347)
T ss_dssp TTCSCCCCEEECCSS
T ss_pred HcccCCceEEEeeCC
Confidence 433334777777666
No 185
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.07 E-value=2e-07 Score=101.79 Aligned_cols=59 Identities=22% Similarity=0.201 Sum_probs=31.2
Q ss_pred CCCCCeeeccCCccccc-----cccc-ccCCcccEEeccCCCCC----ccccccccccCCcceEeecCc
Q 002362 611 LVHLRYLNLSNQSIRKL-----PDTL-CELYNLQKLDISCCCKL----KELPQGIGKLINMRHLLNYGT 669 (930)
Q Consensus 611 L~~Lr~L~L~~~~i~~l-----p~~i-~~L~~L~~L~l~~~~~~----~~lp~~i~~L~~L~~L~l~~~ 669 (930)
+.+|++|+|++|.++.. ...+ ...++|++|+|++|... ..++..+..+++|++|++++|
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N 193 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT 193 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC
Confidence 44566666666665422 1112 23456666666666521 124444455666666666666
No 186
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.06 E-value=9.4e-05 Score=78.97 Aligned_cols=184 Identities=16% Similarity=0.141 Sum_probs=104.1
Q ss_pred CceecchhhHHHHHHHhccC------CCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHH
Q 002362 170 EEICGRVDEKNELLSKLLCE------SSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFR 243 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 243 (930)
.+++|.+..++.+.+.+..+ -.......+-+.|+|++|+|||+||+.+++. .... .+.|..+ +
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~v~~~------~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS------D 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCE---EEEEEHH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCC---EEEEchH------H
Confidence 56899999999998877211 0011234567999999999999999999873 3222 2223321 1
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCceEEEEEeCccccCccC-----------hhhhhhhhc---cCCCCcE
Q 002362 244 VAKAIVEALDGHESRLGEFQSLIKHIYE-SVAGMCFLLVLDDVWDGNYMK-----------WEPFFHCLK---NGLHRSK 308 (930)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~-----------~~~l~~~l~---~~~~gs~ 308 (930)
+ ... ...+.+.....+.+ .-..++.+|+||+++.-.... ...+...+. ....+..
T Consensus 87 l----~~~------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 156 (322)
T 3eie_A 87 L----VSK------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 156 (322)
T ss_dssp H----HTT------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEE
T ss_pred H----hhc------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceE
Confidence 1 110 01122222333333 234566899999997532110 122333332 2234556
Q ss_pred EEEEcCChH-----HHhhhCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCC-chhHHHHHH
Q 002362 309 ILVTTRKKS-----VASMMGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKG-LPLAAKIIG 380 (930)
Q Consensus 309 iivTtr~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~g-lPLai~~~~ 380 (930)
||.||.... +.+ .-...+.+...+.++..++|..++.......... ....|++.+.| .+-.|..+.
T Consensus 157 vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKE----DYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHH----HHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHH----HHHHHHHHcCCCCHHHHHHHH
Confidence 666776542 222 1235788999999999999998875432211222 25667788877 454554444
No 187
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.03 E-value=3.7e-05 Score=82.92 Aligned_cols=181 Identities=10% Similarity=0.082 Sum_probs=103.8
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHh-cCC-eEEEEEeCCCccHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKR-KFD-KILWVCVSETFEEFRVAKA 247 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~vs~~~~~~~~~~~ 247 (930)
.+++|.+..++.+...+... ....+.++|+.|+||||+|+.++.. ... .+. .+..+..+.......+. +
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~~~~~~~~~~ir-~ 95 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELNASDDRGIDVVR-N 95 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEECTTSCCSHHHHH-T
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEcCcccccHHHHH-H
Confidence 45789888888888887632 2333899999999999999999874 211 111 12222222221221111 1
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChH-HHhh-hCCc
Q 002362 248 IVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKS-VASM-MGST 325 (930)
Q Consensus 248 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~ 325 (930)
++..+.... ....+.+-++|+|+++.......+.+...+.......++|++|.... +... ....
T Consensus 96 ~i~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 96 QIKDFASTR--------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp HHHHHHHBC--------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHHhhc--------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 111110000 00123466899999976554445556666655555667777765432 1111 1224
Q ss_pred ceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHH
Q 002362 326 NIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAK 377 (930)
Q Consensus 326 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~ 377 (930)
..+++.+++.++..+.+.+.+-.....-. .+..+.|++.++|.+--+.
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~i~----~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKLKLS----PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCBC----HHHHHHHHHHHTTCHHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 57899999999999988876632221111 1236678888999887443
No 188
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.03 E-value=8.9e-07 Score=95.74 Aligned_cols=65 Identities=14% Similarity=0.117 Sum_probs=30.7
Q ss_pred hhcCCcceEEEcCCcccccCCCCC-----cccCcccccCCCCCeeeccCCcccccccccccCCcccEEeccCCC
Q 002362 578 FRESTSLRVLEFGDWARSLQLGPL-----TRIPRNIERLVHLRYLNLSNQSIRKLPDTLCELYNLQKLDISCCC 646 (930)
Q Consensus 578 ~~~~~~Lr~L~L~~~~~~~~~~~~-----~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~ 646 (930)
...+++|+.|.+.+.... ...+ ..++..+..+++|+.|+|+++.-..+|. + .+++|++|++..|.
T Consensus 135 ~~~l~~L~~L~l~~~~~e--~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFE--EQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGG 204 (362)
T ss_dssp HHHHTTCSEEEECCCCTT--TCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSB
T ss_pred hhhcchhhheeecCcchh--hcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCC
Confidence 456788888888632110 0000 1233334445556666665552122333 2 25555555555444
No 189
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.01 E-value=6e-06 Score=76.70 Aligned_cols=114 Identities=13% Similarity=0.023 Sum_probs=68.6
Q ss_pred ceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHH
Q 002362 171 EICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVE 250 (930)
Q Consensus 171 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 250 (930)
+++|+...++++.+.+..... ...-|.|+|.+|+|||++|+.+++... +.... .+ +.++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~-~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGR-NAQGE-FV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSST-TTTSC-CE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCC-ccCCC-EE-EECCCCCcc---------
Confidence 578999999999888754322 223478999999999999999987311 11122 23 665543221
Q ss_pred HhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCC
Q 002362 251 ALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRK 315 (930)
Q Consensus 251 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 315 (930)
.... ..+... ..-.|+||+++.-.......+...+.......+||.||..
T Consensus 66 ---------~~~~---~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ---------PQLN---DFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ---------SCHH---HHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ---------hhhh---cHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 0111 111111 2237899999876655556666666554555677777764
No 190
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.00 E-value=0.00015 Score=78.37 Aligned_cols=184 Identities=15% Similarity=0.131 Sum_probs=100.8
Q ss_pred CceecchhhHHHHHHHhccC----C--CCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHH
Q 002362 170 EEICGRVDEKNELLSKLLCE----S--SDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFR 243 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 243 (930)
.+++|.+..++.+.+.+..+ . .......+-|.|+|++|+|||+||+.+++. .... .+.+..+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~---~~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCE---EEEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCC---EEEeeHH------H
Confidence 46899999999988876321 0 000123456889999999999999999883 3222 2223222 1
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCceEEEEEeCccccCccC-----------hhhhhhhhcc---CCCCcE
Q 002362 244 VAKAIVEALDGHESRLGEFQSLIKHIYE-SVAGMCFLLVLDDVWDGNYMK-----------WEPFFHCLKN---GLHRSK 308 (930)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~-----------~~~l~~~l~~---~~~gs~ 308 (930)
+. ..+. ...+.....+.. ....++.+|+||+++...... ...+...+.. ...+..
T Consensus 120 l~----~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 120 LV----SKWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp HH----SCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred Hh----hhhc------chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 11 1100 111222222222 234677899999997532110 1223333321 123455
Q ss_pred EEEEcCChH-----HHhhhCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCC-chhHHHHHH
Q 002362 309 ILVTTRKKS-----VASMMGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKG-LPLAAKIIG 380 (930)
Q Consensus 309 iivTtr~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~g-lPLai~~~~ 380 (930)
||.||.... +.+ .-...+.+...+.++..++|..++.......... ....|++.+.| .+-.|..+.
T Consensus 190 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~----~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKE----DYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHH----HHHHHHHHTTTCCHHHHHHHH
T ss_pred EEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHcCCCCHHHHHHHH
Confidence 666776542 222 2345788999999999999988764332111122 25667888888 444454443
No 191
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.00 E-value=0.00023 Score=75.77 Aligned_cols=186 Identities=15% Similarity=0.143 Sum_probs=101.7
Q ss_pred CceecchhhHHHHHHHhccC----C--CCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHH
Q 002362 170 EEICGRVDEKNELLSKLLCE----S--SDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFR 243 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 243 (930)
.+++|.++.++.+.+.+..+ . .+.....+-+.|+|++|+|||+||+.+++. ... ...+.+..+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~--~~~~~i~~~~l~---- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--ANN--STFFSISSSDLV---- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH--TTS--CEEEEEECCSSC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH--cCC--CcEEEEEhHHHH----
Confidence 56899998888887766311 0 011224467899999999999999999873 200 122333333211
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCceEEEEEeCccccCcc------C-h----hhhhhhhcc---CCCCcE
Q 002362 244 VAKAIVEALDGHESRLGEFQSLIKHIYE-SVAGMCFLLVLDDVWDGNYM------K-W----EPFFHCLKN---GLHRSK 308 (930)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~------~-~----~~l~~~l~~---~~~gs~ 308 (930)
... ....+.....+.+ .-..++.+|+||+++..... . . ..+...+.. ...+..
T Consensus 84 ----------~~~--~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 84 ----------SKW--LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp ----------CSS--CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred ----------hhh--hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 000 0111222222222 23466789999999753110 0 1 112222221 123455
Q ss_pred EEEEcCChH-----HHhhhCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCc-hhHHHHHHh
Q 002362 309 ILVTTRKKS-----VASMMGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGL-PLAAKIIGS 381 (930)
Q Consensus 309 iivTtr~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~gl-PLai~~~~~ 381 (930)
||.||.... +.+ .-...+.+...+.++..++|+.+.......... .....|++.+.|. +-.|..+..
T Consensus 152 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~----~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTE----ADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCH----HHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHcCCCCHHHHHHHHH
Confidence 665665432 222 224578899999999999998876432211111 2256788888886 444555443
No 192
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.97 E-value=4.4e-06 Score=85.44 Aligned_cols=86 Identities=14% Similarity=0.137 Sum_probs=61.9
Q ss_pred HHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCcccccccccccCC--cccEEeccCCCCCcccc
Q 002362 575 ERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIRKLPDTLCELY--NLQKLDISCCCKLKELP 652 (930)
Q Consensus 575 ~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~--~L~~L~l~~~~~~~~lp 652 (930)
..+..+++.|+.|+|++|... .+..+|..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.....+|
T Consensus 163 ~i~~~~l~~L~~L~Ls~N~l~----~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNNRLY----RLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHHHHHCTTCCEEECTTSCCC----CCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred HHHHhhCCCCCEEECCCCCCC----CCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccC
Confidence 334467889999999987766 6666777788889999999999988876 3344444 88888888888444454
Q ss_pred c-------cccccCCcceEe
Q 002362 653 Q-------GIGKLINMRHLL 665 (930)
Q Consensus 653 ~-------~i~~L~~L~~L~ 665 (930)
. .+..+++|+.|+
T Consensus 238 ~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 238 DQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp SHHHHHHHHHHHCTTCCEES
T ss_pred cchhHHHHHHHHCcccCeEC
Confidence 2 245667777665
No 193
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.97 E-value=8.7e-05 Score=80.40 Aligned_cols=187 Identities=11% Similarity=0.091 Sum_probs=102.6
Q ss_pred CceecchhhHHHHHHHhccC----CC--CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHH
Q 002362 170 EEICGRVDEKNELLSKLLCE----SS--DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFR 243 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 243 (930)
.+++|.+..++.+.+.+... .- ......+.+.|+|++|+|||+||+.+++. ... ..+.+.++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~---~~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGA---TFFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTC---EEEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCC---eEEEEehHHhhc---
Confidence 46899999999988877421 00 00124567899999999999999999873 211 234444432111
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCceEEEEEeCccccCc-----------cChhhhhhhhccC----CCCc
Q 002362 244 VAKAIVEALDGHESRLGEFQSLIKHIYE-SVAGMCFLLVLDDVWDGNY-----------MKWEPFFHCLKNG----LHRS 307 (930)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~~----~~gs 307 (930)
. ...........+.. ....++.+|+||+++.... .....+...+... ..+.
T Consensus 156 -----------~--~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------K--WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------S--STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------c--ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 0 01111222222222 2235678999999954211 0112333333321 2344
Q ss_pred EEEEEcCChH-HHhhh--CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCC-chhHHHHHHh
Q 002362 308 KILVTTRKKS-VASMM--GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKG-LPLAAKIIGS 381 (930)
Q Consensus 308 ~iivTtr~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~g-lPLai~~~~~ 381 (930)
.||.||.... +...+ .....+.+...+.++..+++...+......-. .+....|++.+.| .+-.+..+..
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5665665432 11111 12347789999999999999887643221111 1235678888888 5555655543
No 194
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.96 E-value=1.8e-05 Score=78.30 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=64.8
Q ss_pred hhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCC
Q 002362 177 DEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHE 256 (930)
Q Consensus 177 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 256 (930)
..++.+.+++..... ......+.|+|++|+|||+||+.+++. .......++|++++ .+...+...+...
T Consensus 36 ~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~- 104 (202)
T 2w58_A 36 KAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQDQ- 104 (202)
T ss_dssp HHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC---C-
T ss_pred HHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhccc-
Confidence 344555566543322 112267899999999999999999984 44444556676653 3444444332211
Q ss_pred CCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhh--hhh-hhccC-CCCcEEEEEcCCh
Q 002362 257 SRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEP--FFH-CLKNG-LHRSKILVTTRKK 316 (930)
Q Consensus 257 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~iivTtr~~ 316 (930)
........+ ... -+|||||++......|.. +.. .+... ..+.++|+||...
T Consensus 105 ----~~~~~~~~~----~~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 105 ----TMNEKLDYI----KKV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp ----CCHHHHHHH----HHS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred ----hHHHHHHHh----cCC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 122222222 222 399999997654444432 332 23221 2355788888743
No 195
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.94 E-value=0.00023 Score=75.06 Aligned_cols=183 Identities=16% Similarity=0.171 Sum_probs=100.1
Q ss_pred CceecchhhHHHHHHHhccCC------CCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHH
Q 002362 170 EEICGRVDEKNELLSKLLCES------SDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFR 243 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 243 (930)
.+++|.+..++.+.+.+..+. .+.....+.+.|+|++|+||||+|+.+++. ... ..+.+.++.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~---~~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSA---TFLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTC---EEEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCC---CeEEeeHHHHhh---
Confidence 468999999999988774310 000113467899999999999999999873 221 223344433211
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHH-HHhcCceEEEEEeCccccCccC-----------hhhhhhhhccC-----CCC
Q 002362 244 VAKAIVEALDGHESRLGEFQSLIKHIY-ESVAGMCFLLVLDDVWDGNYMK-----------WEPFFHCLKNG-----LHR 306 (930)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~~~~-----------~~~l~~~l~~~-----~~g 306 (930)
.. ..+.......+. .....++.+|++|++....... ...+...+... +.+
T Consensus 93 -----------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 93 -----------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp -----------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred -----------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 00 111222222222 2234567899999996532110 01122222211 123
Q ss_pred cEEEEEcCChH-----HHhhhCCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchh-HHHHH
Q 002362 307 SKILVTTRKKS-----VASMMGSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPL-AAKII 379 (930)
Q Consensus 307 s~iivTtr~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPL-ai~~~ 379 (930)
..||.||.... +.+.+ ...+.+...+.++...++...+......-.. .....+++.+.|.+- ++..+
T Consensus 160 v~vi~~tn~~~~l~~~l~~R~--~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~----~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRRF--TKRVYVSLPDEQTRELLLNRLLQKQGSPLDT----EALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHGGGSCCSCH----HHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhhC--CeEEEeCCcCHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHcCCCCHHHHHHH
Confidence 55666776542 22222 3567888888888888888765432211111 235678888888775 44444
No 196
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.93 E-value=2.2e-05 Score=75.94 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=66.4
Q ss_pred chhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcC
Q 002362 175 RVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDG 254 (930)
Q Consensus 175 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 254 (930)
.....+.+.+++..-. ......+.|+|++|+||||||+.+++.......+ .++++. ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcC
Confidence 3444555555543222 1234689999999999999999999843222222 233433 44455555544432
Q ss_pred CCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChh--hhhhhhccC-CCCcEEEEEcCCh
Q 002362 255 HESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWE--PFFHCLKNG-LHRSKILVTTRKK 316 (930)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~~ 316 (930)
.... ... +.+. +.-+|||||++....+.|. .+...+... ..|..||+||...
T Consensus 89 ~~~~-----~~~----~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 89 GKDT-----KFL----KTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp TCCS-----HHH----HHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred chHH-----HHH----HHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 2111 111 2222 3458999999853334443 233333321 2467788888753
No 197
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.92 E-value=1.9e-06 Score=94.04 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=17.8
Q ss_pred ccccCCCCCeeeccCCccc-----ccccccccCCcccEEeccCCC
Q 002362 607 NIERLVHLRYLNLSNQSIR-----KLPDTLCELYNLQKLDISCCC 646 (930)
Q Consensus 607 ~i~~L~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~ 646 (930)
.+..+++|++|+|++|.|+ .++..+...++|++|+|++|.
T Consensus 178 ~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 178 GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 3344444555555554443 123333444445555555444
No 198
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.85 E-value=2.3e-06 Score=80.90 Aligned_cols=91 Identities=13% Similarity=0.154 Sum_probs=60.7
Q ss_pred cCccEEEeeCCCCCC-CCCCCCCCCCcceeeeccCcCceEeCCccccCcccccCccccceeeccccccccceeeeccCCc
Q 002362 801 TNLRSLDLDDCENCE-KLPPLGKLPSLEKLSISFMCSVKRVDNEILGIEITIAFPKLKSLTISWIIMPRLSSLTFDSCPK 879 (930)
Q Consensus 801 ~~L~~L~L~~~~~~~-~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~lp~L~~L~l~~c~~ 879 (930)
.+|+.|+|++|.++. .+..+..+++|+.|+|++|..+++.+ +..|..+ .+..++|+.|+|++|++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g-----------L~~L~~~---~~~~~~L~~L~Ls~C~~ 126 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGC-----------LERLSQL---ENLQKSMLEMEIISCGN 126 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHH-----------HHHHHTC---HHHHHHCCEEEEESCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHH-----------HHHHHhc---ccccCCCCEEEcCCCCc
Confidence 468888888887544 24447788899999999887664321 1111110 00135799999999988
Q ss_pred cCC--CCCCCCCCCCccEEEEecCchhhHH
Q 002362 880 LKA--LPDHFHQTTTLKEFNIGWNCGLLEK 907 (930)
Q Consensus 880 L~~--lp~~l~~l~~L~~L~l~~nc~~l~~ 907 (930)
+++ +. .+.++++|++|+|++ ||.++.
T Consensus 127 ITD~Gl~-~L~~~~~L~~L~L~~-c~~Itd 154 (176)
T 3e4g_A 127 VTDKGII-ALHHFRNLKYLFLSD-LPGVKE 154 (176)
T ss_dssp CCHHHHH-HGGGCTTCCEEEEES-CTTCCC
T ss_pred CCHHHHH-HHhcCCCCCEEECCC-CCCCCc
Confidence 764 32 245688999999999 887664
No 199
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.82 E-value=8.8e-05 Score=77.92 Aligned_cols=149 Identities=14% Similarity=0.024 Sum_probs=93.1
Q ss_pred cchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHH-HHhcCCeEEEEEeCC-CccHHHHHHHHHHH
Q 002362 174 GRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEE-VKRKFDKILWVCVSE-TFEEFRVAKAIVEA 251 (930)
Q Consensus 174 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~ 251 (930)
|-++.++.+...+.. + ......++|+.|+||||+|+.+.+... ....+....++..++ ...+.. .+++++.
T Consensus 1 g~~~~~~~L~~~i~~-----~-~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----S-EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHT-----C-SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHC-----C-CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHH
Confidence 345566677777653 2 357899999999999999999987311 001122334444432 222222 2333333
Q ss_pred hcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCCh-HHHhhhCCcceEeC
Q 002362 252 LDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKK-SVASMMGSTNIISI 330 (930)
Q Consensus 252 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~l 330 (930)
+.... ..+++-++|+|+++.......+.+...+-...+.+.+|++|.+. .+...+..- .+++
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 32211 12455689999998876666777887877766778877766543 343333334 8999
Q ss_pred CCCChHHHHHHHHHHH
Q 002362 331 KELTEEECRLLFNKIA 346 (930)
Q Consensus 331 ~~L~~~~~~~lf~~~~ 346 (930)
.++++++..+.+.+.+
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998876
No 200
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.80 E-value=0.00049 Score=76.75 Aligned_cols=188 Identities=14% Similarity=0.078 Sum_probs=100.0
Q ss_pred CceecchhhHHHHHHHhccC----C--CCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHH
Q 002362 170 EEICGRVDEKNELLSKLLCE----S--SDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFR 243 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 243 (930)
.+++|.+..++.+.+.+..+ . .+.....+-+.|+|++|+|||+||+.+++. . ...-++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~~---- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD---- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHHH----
Confidence 56899999999888876311 0 000123467899999999999999999873 2 122334443321
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCc-------cChhh----hhhhhcc---CCCCcEE
Q 002362 244 VAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNY-------MKWEP----FFHCLKN---GLHRSKI 309 (930)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------~~~~~----l~~~l~~---~~~gs~i 309 (930)
+. ....+.. ...+..+. ...-..++.+|+||+++.... ..... +...+.. ...+..|
T Consensus 204 l~----~~~~g~~--~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 204 LV----SKWLGES--EKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp ------------C--CCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred HH----hhhcchH--HHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 11 1111111 11122222 222235678999999975311 01111 2222211 1345667
Q ss_pred EEEcCChHHH-hh-h-CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCc-hhHHHHHH
Q 002362 310 LVTTRKKSVA-SM-M-GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGL-PLAAKIIG 380 (930)
Q Consensus 310 ivTtr~~~v~-~~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~gl-PLai~~~~ 380 (930)
|.||...... .. . .....+.+...+.++...+|..++.......... ....|++.+.|. +-.|..+.
T Consensus 275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~----~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEA----DFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHH----HHHHHHHHTTTCCHHHHHHHH
T ss_pred EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHH----HHHHHHHHcCCCCHHHHHHHH
Confidence 7677654211 11 1 1235788888899999999988764322111122 255678888884 44444443
No 201
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.80 E-value=8.7e-05 Score=90.31 Aligned_cols=152 Identities=18% Similarity=0.239 Sum_probs=82.8
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcC------C-eEEEEEeCCCccHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKF------D-KILWVCVSETFEEF 242 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~-~~~wv~vs~~~~~~ 242 (930)
+.++||++++++++..|... ...-+.++|.+|+||||+|+.+++. ..... + .++++.++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~~l~~-- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQR--IVKGDVPEGLKGKRIVSLQMGSLLA-- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHHH--HHHTCSCTTSTTCEEEEECC-------
T ss_pred cccCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHH--HhcCCCchhhcCCeEEEeehHHhhc--
Confidence 45899999999999998643 2334789999999999999999884 32211 2 233343322100
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc--CceEEEEEeCccccC--------ccChhhhhhhhccCCCCcEEEEE
Q 002362 243 RVAKAIVEALDGHESRLGEFQSLIKHIYESVA--GMCFLLVLDDVWDGN--------YMKWEPFFHCLKNGLHRSKILVT 312 (930)
Q Consensus 243 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivT 312 (930)
+ .....+.......+.+.+. +++.+|++|++..-. .+....+...+..+ +..+|.|
T Consensus 240 -----------g-~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I~a 305 (854)
T 1qvr_A 240 -----------G-AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGA 305 (854)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--CCCEEEE
T ss_pred -----------c-CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEEEe
Confidence 0 0011123333333333332 467899999996532 11112344444332 3446655
Q ss_pred cCChHHHh-----hh-CCcceEeCCCCChHHHHHHHHHH
Q 002362 313 TRKKSVAS-----MM-GSTNIISIKELTEEECRLLFNKI 345 (930)
Q Consensus 313 tr~~~v~~-----~~-~~~~~~~l~~L~~~~~~~lf~~~ 345 (930)
|....... .+ .-...+.+.+++.++..+++...
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 55443211 11 12346899999999999998753
No 202
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.79 E-value=0.0003 Score=74.13 Aligned_cols=158 Identities=15% Similarity=0.094 Sum_probs=89.5
Q ss_pred CceecchhhHHHHHHHhccCCC-------CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHH
Q 002362 170 EEICGRVDEKNELLSKLLCESS-------DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEF 242 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 242 (930)
.+++|.+..++++.+.+...-. -+-...+.+.|+|++|+|||+||+.+++. ... -++.++ ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~-----~~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQA-----NFISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC-----EEEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCC-----CEEEEE----hH
Confidence 4689999888888877643100 00124567899999999999999999873 221 123332 22
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCc----------cC----hhhhhhhhcc--CCCC
Q 002362 243 RVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNY----------MK----WEPFFHCLKN--GLHR 306 (930)
Q Consensus 243 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------~~----~~~l~~~l~~--~~~g 306 (930)
++. ..+.+.. .. .....+.......+.+|++|+++.-.. .. ...+...+.. ...+
T Consensus 84 ~l~----~~~~g~~--~~---~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELL----TMWFGES--EA---NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHH----HHHHTTC--TT---HHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHH----hhhcCch--HH---HHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 222 2221211 11 122223333345678999999964110 01 1233333332 2235
Q ss_pred cEEEEEcCChHHH-hh-hC---CcceEeCCCCChHHHHHHHHHHHc
Q 002362 307 SKILVTTRKKSVA-SM-MG---STNIISIKELTEEECRLLFNKIAF 347 (930)
Q Consensus 307 s~iivTtr~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~ 347 (930)
..||.||...... .. .. -...+++...+.++..++++....
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~ 200 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 200 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHc
Confidence 6677777655322 11 22 235789999999999999887663
No 203
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.76 E-value=1.5e-05 Score=73.67 Aligned_cols=110 Identities=10% Similarity=0.072 Sum_probs=62.9
Q ss_pred ceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHH
Q 002362 171 EICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVE 250 (930)
Q Consensus 171 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 250 (930)
+++|+...++++.+.+..... ...-|.|+|.+|+|||++|+.+++... -++.+.-..-....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechhhCChHh------
Confidence 578999888888887754221 123478999999999999999987321 23333221111111
Q ss_pred HhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccC-CCCcEEEEEcCC
Q 002362 251 ALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNG-LHRSKILVTTRK 315 (930)
Q Consensus 251 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtr~ 315 (930)
...+.+.. +.-.++||++..........+...+... ..+.+||+||..
T Consensus 67 ---------------~~~~~~~a--~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 ---------------PMELLQKA--EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ---------------HHHHHHHT--TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ---------------hhhHHHhC--CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 11111111 2247899999876544445555555543 345678887763
No 204
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.75 E-value=5e-06 Score=78.59 Aligned_cols=89 Identities=18% Similarity=0.163 Sum_probs=48.5
Q ss_pred CCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCC--CCCCCCC----CCcceeeeccCcCceEeCCccccCcc
Q 002362 776 PPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEK--LPPLGKL----PSLEKLSISFMCSVKRVDNEILGIEI 849 (930)
Q Consensus 776 ~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~--l~~l~~l----~~L~~L~L~~~~~l~~~~~~~~~~~~ 849 (930)
..+|++|+++++.++..--..+..+++|+.|+|++|...++ +..++.+ ++|++|+|++|..+++.+
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-------- 131 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-------- 131 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH--------
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH--------
Confidence 34567777777664432222344667777777777754332 2223332 467777777776554321
Q ss_pred cccCccccceeeccccccccceeeeccCCccCC
Q 002362 850 TIAFPKLKSLTISWIIMPRLSSLTFDSCPKLKA 882 (930)
Q Consensus 850 ~~~f~~L~~L~l~~~~lp~L~~L~l~~c~~L~~ 882 (930)
+..|. .+|+|+.|+|++|+.++.
T Consensus 132 ---l~~L~-------~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 ---IIALH-------HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp ---HHHGG-------GCTTCCEEEEESCTTCCC
T ss_pred ---HHHHh-------cCCCCCEEECCCCCCCCc
Confidence 11111 156677777777766654
No 205
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.74 E-value=0.00016 Score=76.94 Aligned_cols=136 Identities=13% Similarity=0.219 Sum_probs=74.7
Q ss_pred ceecchhhHHHHHHHhccCC---CCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHH
Q 002362 171 EICGRVDEKNELLSKLLCES---SDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKA 247 (930)
Q Consensus 171 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 247 (930)
.++|.+..++.+...+.... .........+.|+|++|+||||+|+.+++. ....-...+.+.++....... ...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~~-~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKHA-VSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTTH-HHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeeccccccccc-HHH
Confidence 47899988888888776431 110223468999999999999999999873 322222345566554322211 111
Q ss_pred HHHHhcCCCC--CCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCC-----------CCcEEEEEcC
Q 002362 248 IVEALDGHES--RLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGL-----------HRSKILVTTR 314 (930)
Q Consensus 248 i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 314 (930)
+ ++.... .......+...+. ....-+++||++..........+...+..+. ....||.||.
T Consensus 95 l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 95 L---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp H---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred h---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 1 221110 1010111222221 2334699999998766555556666554321 2344777777
Q ss_pred C
Q 002362 315 K 315 (930)
Q Consensus 315 ~ 315 (930)
.
T Consensus 169 ~ 169 (311)
T 4fcw_A 169 L 169 (311)
T ss_dssp T
T ss_pred c
Confidence 6
No 206
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.72 E-value=0.00065 Score=74.81 Aligned_cols=110 Identities=14% Similarity=0.128 Sum_probs=68.2
Q ss_pred ccccCCC-CccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccC-cccccCCCCCeeeccCCc
Q 002362 546 VSTCGVK-RMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIP-RNIERLVHLRYLNLSNQS 623 (930)
Q Consensus 546 ~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~ 623 (930)
..+.++. .|+++.+...- . .+-...|.+|.+|+.+.+..+.-. .+..+. ..|.++..|+.+.+..+
T Consensus 57 ~aF~~~~~~L~sI~iP~sv-t------~Ig~~AF~~C~~L~~i~~~~n~p~----~l~~Ig~~aF~~c~~L~~i~~~~~- 124 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDTV-T------EIGSNAFYNCTSLKRVTIQDNKPS----CVKKIGRQAFMFCSELTDIPILDS- 124 (394)
T ss_dssp TTTTTCCSCCCEEEECTTC-C------EECTTTTTTCTTCCEEEEGGGCCC----CCCEECTTTTTTCTTCCBCGGGTT-
T ss_pred hhccCCCCcCEEEEECCCe-e------EEhHHHhhCCccCceEeecCCCCC----eeeEechhhchhcccceeeccCCc-
Confidence 3455664 58888886541 1 112445888999999988744222 344553 34667778887777654
Q ss_pred cccccc-ccccCCcccEEeccCCCCCcccc-ccccccCCcceEeecCc
Q 002362 624 IRKLPD-TLCELYNLQKLDISCCCKLKELP-QGIGKLINMRHLLNYGT 669 (930)
Q Consensus 624 i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~ 669 (930)
++.++. .+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+
T Consensus 125 ~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 125 VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred cceehhhhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 455543 4667888888888643 33333 34567777887777544
No 207
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00046 Score=74.17 Aligned_cols=179 Identities=15% Similarity=0.154 Sum_probs=99.1
Q ss_pred CCceecchhhHHHHHHHhccCCC-------CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccH
Q 002362 169 EEEICGRVDEKNELLSKLLCESS-------DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEE 241 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 241 (930)
-.++.|-++.+++|.+.+.-+-. -+-...+-|.++|++|.|||.||+.+++. ....| +.|..+.-.+
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~s- 220 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQ- 220 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSC-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhc-
Confidence 35688888888887766532100 01234567899999999999999999983 33332 3344332110
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHH-HHhcCceEEEEEeCccccCc--------cC------hhhhhhhhcc--CC
Q 002362 242 FRVAKAIVEALDGHESRLGEFQSLIKHIY-ESVAGMCFLLVLDDVWDGNY--------MK------WEPFFHCLKN--GL 304 (930)
Q Consensus 242 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~~--------~~------~~~l~~~l~~--~~ 304 (930)
. ...+.+...+.+. ..-...+.+|++|+++.--. .. ...+...+.. ..
T Consensus 221 -------------k--~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 221 -------------K--YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp -------------S--STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred -------------c--ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 0 1112222223332 23346789999999964210 00 1112222222 23
Q ss_pred CCcEEEEEcCChHHH-hh-h---CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCch
Q 002362 305 HRSKILVTTRKKSVA-SM-M---GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLP 373 (930)
Q Consensus 305 ~gs~iivTtr~~~v~-~~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glP 373 (930)
.+..||.||...+.. .. . .-+..+++...+.++..++|+.+.-.... ...-+ ...+++.+.|.-
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCC----HHHHHHHCCSCC
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHCCCCC
Confidence 344566677654321 11 1 23678999999999999999877633211 11112 355777787743
No 208
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.71 E-value=0.00077 Score=73.94 Aligned_cols=187 Identities=14% Similarity=0.145 Sum_probs=98.8
Q ss_pred CCceecchhhHHHHHHHhccCCC------CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHH
Q 002362 169 EEEICGRVDEKNELLSKLLCESS------DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEF 242 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 242 (930)
-.+++|.+..++.+.+++..... ......+-+.|+|.+|+|||+||+.+++. ... ..+.+.++.-...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~---~~~~v~~~~l~~~- 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNA---TFFNISAASLTSK- 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcC---cEEEeeHHHhhcc-
Confidence 35799999999999988732100 00113467999999999999999999762 211 2333333332110
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCceEEEEEeCccccCc-------cCh----hhhhhhhcc----CCCC
Q 002362 243 RVAKAIVEALDGHESRLGEFQSLIKHIYE-SVAGMCFLLVLDDVWDGNY-------MKW----EPFFHCLKN----GLHR 306 (930)
Q Consensus 243 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~-------~~~----~~l~~~l~~----~~~g 306 (930)
. ..........+.+ .-.....+|+||+++.... ... ..+...+.. ....
T Consensus 188 -~--------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 188 -Y--------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp -------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----C
T ss_pred -c--------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCC
Confidence 0 0001112222222 2234557999999964310 001 122222221 1223
Q ss_pred cEEEEEcCChH-HHhh-hCC-cceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchh-HHHHHH
Q 002362 307 SKILVTTRKKS-VASM-MGS-TNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPL-AAKIIG 380 (930)
Q Consensus 307 s~iivTtr~~~-v~~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPL-ai~~~~ 380 (930)
..||.||.... +... ..- ...+.+...+.++..+++...+......-.. +....|++.+.|..- ++..+.
T Consensus 253 v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~----~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQ----KELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCH----HHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHcCCCCHHHHHHHH
Confidence 45665665432 1111 112 3468899999999999998876433221111 235678888888544 554443
No 209
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.70 E-value=0.00026 Score=79.44 Aligned_cols=185 Identities=11% Similarity=0.065 Sum_probs=101.7
Q ss_pred CceecchhhHHHHHHHhccCCCC-------CCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSD-------SPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEF 242 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 242 (930)
.+++|.+..++++.+++...... +....+-+.|+|++|+|||++|+.+++. ... ..+.+.++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~---~fv~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGA---FFFLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSS---EEEEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCC---CEEEEEch------
Confidence 46899999999998877532000 0113456899999999999999999773 221 22333321
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCc-----------cChhhhhhhhcc--CCCCcEE
Q 002362 243 RVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNY-----------MKWEPFFHCLKN--GLHRSKI 309 (930)
Q Consensus 243 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~--~~~gs~i 309 (930)
.+ ...+ ...........+.....+++.+|+||+++.-.. .....+...+.. ...+..|
T Consensus 273 ~l----~~~~-----~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 EI----MSKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp HH----HTSC-----TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred Hh----hhhh-----cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 11 1110 011122233334444556778999999943211 011234444432 2234556
Q ss_pred EEEcCChHH-Hhhh----CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCc-hhHHHHH
Q 002362 310 LVTTRKKSV-ASMM----GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGL-PLAAKII 379 (930)
Q Consensus 310 ivTtr~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~gl-PLai~~~ 379 (930)
|.||..... ...+ .....+.+...+.++..++|..++..... ..... ..++++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhh----HHHHHHHccCCcHHHHHHH
Confidence 667765422 1111 12347899999999999999887643221 11112 34566677764 4444433
No 210
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.70 E-value=0.0013 Score=70.27 Aligned_cols=177 Identities=19% Similarity=0.186 Sum_probs=93.3
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
..++|.+..++.+...+...... +.....+.|+|++|+||||||+.+++. ....| .....+-....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~-~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~---~~~sg~~~~~~-------- 90 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMR-GEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNI---HVTSGPVLVKQ-------- 90 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHH-TCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCE---EEEETTTCCSH--------
T ss_pred HHccCcHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEechHhcCH--------
Confidence 45789887777776666432000 123467999999999999999999883 32111 11111111111
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCC------------------CCcEE-E
Q 002362 250 EALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGL------------------HRSKI-L 310 (930)
Q Consensus 250 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~i-i 310 (930)
..+. .+...+. ++-++++|++..-.....+.+...+.... +...+ -
T Consensus 91 -------------~~l~-~~~~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 91 -------------GDMA-AILTSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp -------------HHHH-HHHHHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred -------------HHHH-HHHHHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 1111 1111222 33477888886543222233332221110 01122 2
Q ss_pred EEcCChHHHhhhC--CcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHH
Q 002362 311 VTTRKKSVASMMG--STNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKII 379 (930)
Q Consensus 311 vTtr~~~v~~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~ 379 (930)
.|++...+...+. ..-.+.+++.+.++-.+++.+.+-.....- -.+.+..|++.+.|.|-.+..+
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~----~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEI----EDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCB----CHHHHHHHHHTSTTCHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHhcCCChHHHHHH
Confidence 3444432221111 123588999999999999988763222111 1234788999999999755443
No 211
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.70 E-value=0.00027 Score=79.44 Aligned_cols=145 Identities=16% Similarity=0.177 Sum_probs=79.8
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcC------Ce-EEEEEeCCCccHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKF------DK-ILWVCVSETFEEF 242 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~-~~wv~vs~~~~~~ 242 (930)
+.++||+.++++++..|... ...-+.|+|++|+|||++|+.++. .+...+ +. .+.+.++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~------~~~~~LL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRVMTLDMG------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEEeeCC------
Confidence 35999999999999998642 223467999999999999999988 332211 11 2222222
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChHHHhh-
Q 002362 243 RVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKSVASM- 321 (930)
Q Consensus 243 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~- 321 (930)
....+.. ..... ..+...-..++.+|++|. ..+....+...+..+ ..++|.+|........
T Consensus 246 -------~~~~g~~--e~~~~---~~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~g--~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 246 -------TKYRGEF--EDRLK---KVMDEIRQAGNIILFIDA----AIDASNILKPSLARG--ELQCIGATTLDEYRKYI 307 (468)
T ss_dssp ----------------CTTHH---HHHHHHHTCCCCEEEECC------------CCCTTSS--SCEEEEECCTTTTHHHH
T ss_pred -------ccccchH--HHHHH---HHHHHHHhcCCeEEEEeC----chhHHHHHHHhhcCC--CEEEEecCCHHHHHHHh
Confidence 0000000 01111 222222335678899991 122223344444332 3556666655432111
Q ss_pred ------hCCcceEeCCCCChHHHHHHHHHHH
Q 002362 322 ------MGSTNIISIKELTEEECRLLFNKIA 346 (930)
Q Consensus 322 ------~~~~~~~~l~~L~~~~~~~lf~~~~ 346 (930)
..-..++.+.+.+.++..+++...+
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1123479999999999999998754
No 212
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.67 E-value=2.4e-05 Score=75.95 Aligned_cols=119 Identities=11% Similarity=-0.020 Sum_probs=73.9
Q ss_pred cccCCCCccEEEEccc-cccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccc
Q 002362 547 STCGVKRMRSLIIDYS-RYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIR 625 (930)
Q Consensus 547 ~~~~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~ 625 (930)
.+...+.|++|.+.++ .+.+. ....+...+...+.|++|+|++|... ......+...+...+.|++|+|++|.|.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~--g~~~l~~~L~~~~~L~~L~Ls~n~i~--~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVP--TLKACAEALKTNTYVKKFSIVGTRSN--DPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHH--HHHHHHHHHTTCCSCCEEECTTSCCC--HHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHhcCCCCCEEEecCCCCCCHH--HHHHHHHHHHhCCCcCEEECcCCCCC--hHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 3455677888888777 54321 11234445666778888888865432 1112234455556677888888888776
Q ss_pred c-----cccccccCCcccEEec--cCCCCCcc----ccccccccCCcceEeecCc
Q 002362 626 K-----LPDTLCELYNLQKLDI--SCCCKLKE----LPQGIGKLINMRHLLNYGT 669 (930)
Q Consensus 626 ~-----lp~~i~~L~~L~~L~l--~~~~~~~~----lp~~i~~L~~L~~L~l~~~ 669 (930)
. +...+...++|++|++ ++|..-.. +...+...++|++|++++|
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 3 5666777778888888 66663222 4445556677888888776
No 213
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.63 E-value=4.8e-05 Score=70.62 Aligned_cols=86 Identities=15% Similarity=0.087 Sum_probs=50.3
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCce
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMC 277 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (930)
..+.|+|..|+|||||++.++.... ..=..++++...+-... . +..+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~--~~g~~~~~~~~~~~~~~-----------------------------~-~~~~~ 84 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQAL--EAGKNAAYIDAASMPLT-----------------------------D-AAFEA 84 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHH--TTTCCEEEEETTTSCCC-----------------------------G-GGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEcHHHhhHH-----------------------------H-HHhCC
Confidence 5799999999999999999998432 21112666665542221 0 11234
Q ss_pred EEEEEeCccccCccChhhhhhhhcc-CCCC-cEEEEEcCC
Q 002362 278 FLLVLDDVWDGNYMKWEPFFHCLKN-GLHR-SKILVTTRK 315 (930)
Q Consensus 278 ~LlVlDdv~~~~~~~~~~l~~~l~~-~~~g-s~iivTtr~ 315 (930)
-++||||+.......-+.+...+.. ...| ++||+||+.
T Consensus 85 ~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 85 EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp SEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 5889999966432222233333322 1123 348888884
No 214
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.59 E-value=0.00013 Score=75.42 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=33.6
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhch
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
..++|....+.++.+.+..... ....|.|+|.+|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 3588999988888877654322 2245789999999999999999873
No 215
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00063 Score=74.37 Aligned_cols=179 Identities=15% Similarity=0.146 Sum_probs=99.2
Q ss_pred CCceecchhhHHHHHHHhccCCC-------CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccH
Q 002362 169 EEEICGRVDEKNELLSKLLCESS-------DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEE 241 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 241 (930)
-.++.|-++.+++|.+.+.-+-. -+-...+-|.++|++|.|||+||+.+++. .... .+.|..+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~---~~~v~~s~l~s- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGAN---FIFSPASGIVD- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGTCC-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehhhhcc-
Confidence 35678888888777766532100 01235678999999999999999999983 3222 23344332111
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHH-HHhcCceEEEEEeCccccC------ccC--------hhhhhhhhcc--CC
Q 002362 242 FRVAKAIVEALDGHESRLGEFQSLIKHIY-ESVAGMCFLLVLDDVWDGN------YMK--------WEPFFHCLKN--GL 304 (930)
Q Consensus 242 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~------~~~--------~~~l~~~l~~--~~ 304 (930)
....+.......+. ..-...+.+|++|+++.-- ... ...+...+.. ..
T Consensus 254 ---------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 254 ---------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp ---------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred ---------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 01112222223332 2334678999999996421 001 1122233322 23
Q ss_pred CCcEEEEEcCChHHHh-h-hC---CcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCch
Q 002362 305 HRSKILVTTRKKSVAS-M-MG---STNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLP 373 (930)
Q Consensus 305 ~gs~iivTtr~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glP 373 (930)
.+..||.||....... . .. -...+++...+.++..++|+.+.-.... ...-+ ...+++.+.|+-
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCC----HHHHHHTCCSCC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhCCCCC
Confidence 4456777777654321 1 11 2457889888888888998876643221 11112 345677777743
No 216
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.57 E-value=0.00087 Score=71.03 Aligned_cols=153 Identities=12% Similarity=0.161 Sum_probs=84.6
Q ss_pred CceecchhhHHHHHHHhccC--CCC------CCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCcc-
Q 002362 170 EEICGRVDEKNELLSKLLCE--SSD------SPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFE- 240 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~--~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~- 240 (930)
..++|.+..++.+...+... ... .......+.|+|++|+|||++|+.+++. ... ..+.+.++.-.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--l~~---~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL--ANA---PFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEcchhcccC
Confidence 45899999999998877541 000 0012356889999999999999999873 221 234444433211
Q ss_pred ------HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccC------------hhhhhhhhcc
Q 002362 241 ------EFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMK------------WEPFFHCLKN 302 (930)
Q Consensus 241 ------~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~------------~~~l~~~l~~ 302 (930)
......++.....+ .+.. .+.+.+|+||+++...... ...+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGG-------------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTT-------------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCccHHHHHHHHHHHhhH-------------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 11122222221100 0000 1235699999997654333 3344444432
Q ss_pred C----------CCCcEEEEEcC----Ch-----HHHhhhCCcceEeCCCCChHHHHHHHHH
Q 002362 303 G----------LHRSKILVTTR----KK-----SVASMMGSTNIISIKELTEEECRLLFNK 344 (930)
Q Consensus 303 ~----------~~gs~iivTtr----~~-----~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 344 (930)
. ..+..+|.|+. .. .+...+ ...+++.+++.++..+++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~--~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRL--PIRVELTALSAADFERILTE 213 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTC--CEEEECCCCCHHHHHHHHHS
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhC--CceEEcCCcCHHHHHHHHHh
Confidence 2 12445666642 21 122222 24699999999999998874
No 217
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.55 E-value=0.00091 Score=68.69 Aligned_cols=183 Identities=11% Similarity=0.053 Sum_probs=92.3
Q ss_pred CceecchhhHHHHHHHh---ccCCC---CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHH
Q 002362 170 EEICGRVDEKNELLSKL---LCESS---DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFR 243 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 243 (930)
.+++|.+..++++.+.+ ..+.. -+....+-+.|+|++|+||||||+.+++. .... .+.+..+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVP---FFTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCC---EEEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCC---EEEEeHHHHHH---
Confidence 56899887777665543 22110 00112345889999999999999999873 2212 23333322110
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCcc--------------Chhhhhhhhcc--CCCCc
Q 002362 244 VAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYM--------------KWEPFFHCLKN--GLHRS 307 (930)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~--------------~~~~l~~~l~~--~~~gs 307 (930)
... ..........+.........++++|+++..... ....+...+.. ...+.
T Consensus 84 -----------~~~-~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 84 -----------MFV-GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp -----------SCC-CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred -----------Hhh-hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 000 011122223333333455679999999532110 01112222221 22345
Q ss_pred EEEEEcCChH-HHhhh-C---CcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCC-chhHHH
Q 002362 308 KILVTTRKKS-VASMM-G---STNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKG-LPLAAK 377 (930)
Q Consensus 308 ~iivTtr~~~-v~~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~g-lPLai~ 377 (930)
.||.||.... +...+ . -...+.+...+.++-.+++..+.-... ...... ...++..+.| .+--+.
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCcccc----HHHHHHHcCCCCHHHHH
Confidence 6777776543 21111 1 135788888888888888877653211 111111 2346667777 554443
No 218
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.0005 Score=75.03 Aligned_cols=179 Identities=17% Similarity=0.159 Sum_probs=93.2
Q ss_pred cCCceecchhhHHHHHHHhccCCC-------CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCcc
Q 002362 168 DEEEICGRVDEKNELLSKLLCESS-------DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFE 240 (930)
Q Consensus 168 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 240 (930)
.-.++.|-++.+++|.+.+.-+-. -+-...+-+.++|++|+|||+||+.+++. ...+ .+.|..++-.+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~---~~~v~~~~l~~ 244 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAA---FIRVNGSEFVH 244 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCE---EEEEEGGGTCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---eEEEecchhhc
Confidence 345788999888888776532110 01235667999999999999999999983 3322 23344332111
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHH-HHHHhcCceEEEEEeCcccc------CccC--------hhhhhhhhcc--C
Q 002362 241 EFRVAKAIVEALDGHESRLGEFQSLIKH-IYESVAGMCFLLVLDDVWDG------NYMK--------WEPFFHCLKN--G 303 (930)
Q Consensus 241 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~kr~LlVlDdv~~~------~~~~--------~~~l~~~l~~--~ 303 (930)
....+....... +...-...+.++++|+++.. .... ...+...+.. .
T Consensus 245 ----------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 245 ----------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp ----------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred ----------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 011112222222 22333467899999999531 0000 1122222222 2
Q ss_pred CCCcEEEEEcCChHHH-hh-hC---CcceEeCCCCC-hHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCc
Q 002362 304 LHRSKILVTTRKKSVA-SM-MG---STNIISIKELT-EEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGL 372 (930)
Q Consensus 304 ~~gs~iivTtr~~~v~-~~-~~---~~~~~~l~~L~-~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~gl 372 (930)
..+..||.||...+.. .. .. -...+++..++ .++..++|+.+.-... ....-+ ...+++.+.|.
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~-l~~~~d----l~~lA~~t~G~ 378 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS-LAPEAD----LDSLIIRNDSL 378 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC-BCTTCC----HHHHHHHTTTC
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC-CCcccC----HHHHHHHCCCC
Confidence 3445677777654321 11 12 24567886564 5555666766553221 111112 34566777764
No 219
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.0018 Score=70.49 Aligned_cols=177 Identities=15% Similarity=0.133 Sum_probs=97.2
Q ss_pred CceecchhhHHHHHHHhccC----C---CCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHH
Q 002362 170 EEICGRVDEKNELLSKLLCE----S---SDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEF 242 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 242 (930)
.++.|-++.+++|.+.+.-+ . .-+-...+-|.++|++|.|||+||+.+++. .... .+.|..+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~---fi~vs~s~L~--- 280 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDAT---FIRVIGSELV--- 280 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGGC---
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCC---eEEEEhHHhh---
Confidence 46788888888887654211 0 001235678899999999999999999983 3322 2334433211
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHH-HHhcCceEEEEEeCccccCc------cC--------hhhhhhhhcc--CCC
Q 002362 243 RVAKAIVEALDGHESRLGEFQSLIKHIY-ESVAGMCFLLVLDDVWDGNY------MK--------WEPFFHCLKN--GLH 305 (930)
Q Consensus 243 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~~------~~--------~~~l~~~l~~--~~~ 305 (930)
.. ...+.+...+.+. ..-...+++|++|+++..-. .. ...+...+.. ...
T Consensus 281 -----------sk--~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 281 -----------QK--YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp -----------CC--SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred -----------cc--cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 11 1112222222332 33356789999999964210 00 0112222222 223
Q ss_pred CcEEEEEcCChHHH-hh-h---CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCc
Q 002362 306 RSKILVTTRKKSVA-SM-M---GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGL 372 (930)
Q Consensus 306 gs~iivTtr~~~v~-~~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~gl 372 (930)
+..||.||...... .. . .-...+++...+.++..++|+.+.-... ....-+ ...|++.+.|.
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~-l~~dvd----l~~LA~~T~Gf 414 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS-VERGIR----WELISRLCPNS 414 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC-BCSSCC----HHHHHHHCCSC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC-CCCCCC----HHHHHHHCCCC
Confidence 44566677654321 11 1 2356889999999999999987764321 111112 34577788775
No 220
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.52 E-value=0.00061 Score=82.00 Aligned_cols=153 Identities=17% Similarity=0.232 Sum_probs=88.4
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHh------cCCeEEEE-EeCCCccHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKR------KFDKILWV-CVSETFEEF 242 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------~F~~~~wv-~vs~~~~~~ 242 (930)
+.++||+.+++++++.|... ...-+.|+|.+|+||||+|+.+++. +.. .....+|. ..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~--l~~~~v~~~~~~~~~~~~~~~~l---- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWR--IVQGDVPEVMADCTIYSLDIGSL---- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHH--HHHTCSCGGGTTCEEEECCCC------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHH--HHhCCCChhhcCCEEEEEcHHHH----
Confidence 46899999999999998643 2345689999999999999999873 322 12333332 11110
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHh-cCceEEEEEeCccccC--------ccC-hhhhhhhhccCCCCcEEEEE
Q 002362 243 RVAKAIVEALDGHESRLGEFQSLIKHIYESV-AGMCFLLVLDDVWDGN--------YMK-WEPFFHCLKNGLHRSKILVT 312 (930)
Q Consensus 243 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~--------~~~-~~~l~~~l~~~~~gs~iivT 312 (930)
+.+ .....+.++....+.+.+ ..++.+|++|++.... ... ...+...+. ..+..+|.+
T Consensus 254 ---------~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~a 321 (758)
T 1r6b_X 254 ---------LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGS 321 (758)
T ss_dssp ----------CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEE
T ss_pred ---------hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEE
Confidence 001 111223444444444444 3457899999997531 001 111222222 234566666
Q ss_pred cCChHHHhhh-------CCcceEeCCCCChHHHHHHHHHHH
Q 002362 313 TRKKSVASMM-------GSTNIISIKELTEEECRLLFNKIA 346 (930)
Q Consensus 313 tr~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 346 (930)
|........+ .....+.+.+.+.++..+++....
T Consensus 322 t~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 322 TTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp ECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred eCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 6654432211 112368999999999998887654
No 221
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.51 E-value=1.5e-05 Score=77.35 Aligned_cols=119 Identities=10% Similarity=0.086 Sum_probs=82.7
Q ss_pred hhHHHHHhhcCCcceEEEcCCc-ccccCCCCCcccCcccccCCCCCeeeccCCccc-----ccccccccCCcccEEeccC
Q 002362 571 GKILERLFRESTSLRVLEFGDW-ARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIR-----KLPDTLCELYNLQKLDISC 644 (930)
Q Consensus 571 ~~~~~~~~~~~~~Lr~L~L~~~-~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~ 644 (930)
.+.+...+...+.|+.|+|++| ... ......+...+...++|++|+|++|.|. .+...+...++|++|+|++
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~--~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIP--VPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCC--HHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCC--HHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC
Confidence 3446677888999999999986 432 1123345566777899999999999987 3556667778999999999
Q ss_pred CCCCc----cccccccccCCcceEee--cCcccccc----cCCcCCCCCCCCcCCce
Q 002362 645 CCKLK----ELPQGIGKLINMRHLLN--YGTISLRY----MPVGIGRLTSLRTLDEF 691 (930)
Q Consensus 645 ~~~~~----~lp~~i~~L~~L~~L~l--~~~~~~~~----~p~~i~~l~~L~~L~~~ 691 (930)
|..-. .+...+...++|++|++ ++|..... +...+...++|++|++.
T Consensus 103 N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 103 NFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred CcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence 98432 25667788889999999 66633221 22334444566666653
No 222
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.51 E-value=0.00042 Score=77.69 Aligned_cols=96 Identities=13% Similarity=0.119 Sum_probs=57.5
Q ss_pred EEEEeCccccCccChhhhhhhhccCCCCcEEE-EE---------cC----ChHH-HhhhCCcceEeCCCCChHHHHHHHH
Q 002362 279 LLVLDDVWDGNYMKWEPFFHCLKNGLHRSKIL-VT---------TR----KKSV-ASMMGSTNIISIKELTEEECRLLFN 343 (930)
Q Consensus 279 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vT---------tr----~~~v-~~~~~~~~~~~l~~L~~~~~~~lf~ 343 (930)
++++|++...+.+.++.+...+...... .+| .| |. ...+ .........+.+.+++.++..+++.
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 8999999887666677777776654444 344 44 32 1111 1112234467999999999999998
Q ss_pred HHHcCCCCchhhHHHHHHHHHHHHHc-CCchhHHHHH
Q 002362 344 KIAFSDRPIEEREKLEQIGRKIANKC-KGLPLAAKII 379 (930)
Q Consensus 344 ~~~~~~~~~~~~~~l~~~~~~i~~~c-~glPLai~~~ 379 (930)
..+-.....-. .+....|++.+ +|.|..+..+
T Consensus 377 ~~~~~~~~~~~----~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 377 IRAQTEGINIS----EEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHTCCBC----HHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHhCCCCC----HHHHHHHHHHccCCCHHHHHHH
Confidence 77531111111 12356677777 7877655443
No 223
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.50 E-value=0.0011 Score=72.88 Aligned_cols=141 Identities=10% Similarity=0.106 Sum_probs=83.2
Q ss_pred eeEEEEEecCCccc-cccccCCCCccEEEEccccccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccC-ccc
Q 002362 531 VRHLLLIVGNGASF-PVSTCGVKRMRSLIIDYSRYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIP-RNI 608 (930)
Q Consensus 531 ~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp-~~i 608 (930)
++.+.+.. .+..+ ...+.+|.+|+++.+..+..... ..+-...|.++..|+.+.+.. .+..++ ..+
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l---~~Ig~~aF~~c~~L~~i~~~~--------~~~~I~~~aF 133 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCV---KKIGRQAFMFCSELTDIPILD--------SVTEIDSEAF 133 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCC---CEECTTTTTTCTTCCBCGGGT--------TCSEECTTTT
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCee---eEechhhchhcccceeeccCC--------ccceehhhhh
Confidence 45555532 22222 45678899999999876531111 112234588888888877763 244444 356
Q ss_pred ccCCCCCeeeccCCcccccc-cccccCCcccEEeccCCCCCccccccccccCCcceEeecCcccccccCCcCCCCCCCCc
Q 002362 609 ERLVHLRYLNLSNQSIRKLP-DTLCELYNLQKLDISCCCKLKELPQGIGKLINMRHLLNYGTISLRYMPVGIGRLTSLRT 687 (930)
Q Consensus 609 ~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 687 (930)
..+..|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +..+....-...+|+.+.+..+. ...-...+..+.+|..
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~-~~i~~~af~~c~~l~~ 209 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKV-TRIGTNAFSECFALST 209 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTC-CEECTTTTTTCTTCCE
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce--eeEeccccccccceeEEEECCcc-cccccchhhhccccce
Confidence 78889999999754 44443 35677889999988754 45554433334678888775541 1112233444555444
No 224
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.50 E-value=0.00015 Score=87.11 Aligned_cols=155 Identities=14% Similarity=0.220 Sum_probs=90.5
Q ss_pred CceecchhhHHHHHHHhccCCCC---CCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSD---SPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAK 246 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 246 (930)
..++|.+..++.+...+.....+ .......+.++|++|+|||++|+.+++. ....-...+.+.++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccccc----
Confidence 45899999998888887643221 1223457999999999999999999873 32222345556654321100
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCC-----------CCcEEEEEcCC
Q 002362 247 AIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGL-----------HRSKILVTTRK 315 (930)
Q Consensus 247 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 315 (930)
.. ....+...+. ....-+|+||++..........+...+..+. ...+||+||..
T Consensus 565 ----------~~--~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 ----------ST--SGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ----------CC--C---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ----------cc--ccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 00 0111111111 1233489999998776555566666665421 34688888873
Q ss_pred h-----H----HHhhh-----CC-cceEeCCCCChHHHHHHHHHH
Q 002362 316 K-----S----VASMM-----GS-TNIISIKELTEEECRLLFNKI 345 (930)
Q Consensus 316 ~-----~----v~~~~-----~~-~~~~~l~~L~~~~~~~lf~~~ 345 (930)
. . +...+ .- ...+.+.++++++..+++...
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 1 1 11111 11 248889999998888877664
No 225
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.48 E-value=0.00019 Score=75.62 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=36.3
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhc
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
+.++|+...+.++.+.+..... ....|.|+|.+|+|||++|+.+++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHH
Confidence 3588999999988888765332 234578999999999999999987
No 226
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.38 E-value=8.3e-05 Score=75.95 Aligned_cols=81 Identities=26% Similarity=0.241 Sum_probs=61.9
Q ss_pred ccCCCCCeeeccCCcccccc---cccccCCcccEEeccCCCCCccccccccccC--CcceEeecCcccccccCC------
Q 002362 609 ERLVHLRYLNLSNQSIRKLP---DTLCELYNLQKLDISCCCKLKELPQGIGKLI--NMRHLLNYGTISLRYMPV------ 677 (930)
Q Consensus 609 ~~L~~Lr~L~L~~~~i~~lp---~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~--~L~~L~l~~~~~~~~~p~------ 677 (930)
.++++|+.|+|++|.|+.++ ..+..+++|++|+|++|. +..+ ..+..+. +|++|++++|+....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 46889999999999988654 567789999999999998 6655 3355565 999999999976554542
Q ss_pred -cCCCCCCCCcCCce
Q 002362 678 -GIGRLTSLRTLDEF 691 (930)
Q Consensus 678 -~i~~l~~L~~L~~~ 691 (930)
.+..+++|+.|+..
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 25677888888744
No 227
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.00062 Score=74.36 Aligned_cols=178 Identities=13% Similarity=0.157 Sum_probs=96.5
Q ss_pred CCceecchhhHHHHHHHhccC----C---CCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccH
Q 002362 169 EEEICGRVDEKNELLSKLLCE----S---SDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEE 241 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 241 (930)
-.++.|-++.+++|.+.+..+ . .-+-...+-|.++|++|.|||+||+.+++. .... .+.|..+.-.
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~---f~~v~~s~l~-- 252 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNAT---FLKLAAPQLV-- 252 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGGC--
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCC---EEEEehhhhh--
Confidence 356889998888887764321 0 001235678999999999999999999983 3222 2333333211
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCceEEEEEeCcccc-------Ccc---Ch----hhhhhhhcc--CC
Q 002362 242 FRVAKAIVEALDGHESRLGEFQSLIKHIYE-SVAGMCFLLVLDDVWDG-------NYM---KW----EPFFHCLKN--GL 304 (930)
Q Consensus 242 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~-------~~~---~~----~~l~~~l~~--~~ 304 (930)
.. ...+.+...+.+.. .-...+++|++|+++.- ... .. ..+...+.. +.
T Consensus 253 ------------~~--~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 253 ------------QM--YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp ------------SS--CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred ------------hc--ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 11 11122223333332 22356789999999531 000 01 112222322 12
Q ss_pred CCcEEEEEcCChHHHh-hh-C---CcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCc
Q 002362 305 HRSKILVTTRKKSVAS-MM-G---STNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGL 372 (930)
Q Consensus 305 ~gs~iivTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~gl 372 (930)
.+-.||.||....... .+ . -...+++...+.++..++|+.+.-.... ...-+ ...|++.+.|.
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDIN----WQELARSTDEF 386 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCC----HHHHHHHCSSC
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCC
Confidence 3445666777654321 11 1 2557899999999888888766532111 11112 34567777764
No 228
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.35 E-value=0.0017 Score=72.10 Aligned_cols=179 Identities=12% Similarity=0.083 Sum_probs=96.4
Q ss_pred CceecchhhHHHHHHHhccCCC------CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESS------DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFR 243 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 243 (930)
.+++|.++.++++.+.+..-.. -+....+-+.|+|++|+|||+||+.+++. .... .+.+++++-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~---f~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVP---FFHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCC---eeeCCHHHHHHH--
Confidence 4689988776666655321100 00112334889999999999999999873 2221 233443321110
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCcc--------------Chhhhhhhhcc--CCCCc
Q 002362 244 VAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYM--------------KWEPFFHCLKN--GLHRS 307 (930)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~--------------~~~~l~~~l~~--~~~gs 307 (930)
.. ..........+.......+.+|+||+++.-... ....+...+.. ...+.
T Consensus 89 ------------~~-g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 ------------FV-GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp ------------CT-THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred ------------Hh-cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 00 011122233344444567889999999653111 11223322221 12355
Q ss_pred EEEEEcCChHHHh-h-hC---CcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCch
Q 002362 308 KILVTTRKKSVAS-M-MG---STNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLP 373 (930)
Q Consensus 308 ~iivTtr~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glP 373 (930)
.||.||...+... . .. -...+.+...+.++-.++++.++-... .....+ ...+++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~-l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP-LAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC-Ccchhh----HHHHHHhcCCCc
Confidence 6777777654322 1 22 134788999898888888877664321 111111 334777888876
No 229
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.0019 Score=69.61 Aligned_cols=178 Identities=16% Similarity=0.140 Sum_probs=96.9
Q ss_pred CCceecchhhHHHHHHHhccC---CC----CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccH
Q 002362 169 EEEICGRVDEKNELLSKLLCE---SS----DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEE 241 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~~---~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 241 (930)
-.++-|-++.+++|.+.+.-+ .+ -+-...+-|.++|++|.|||.||+.+++. ....| +.|..++-
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l--- 252 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSEL--- 252 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGG---
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHh---
Confidence 346788888877777655321 00 01234677999999999999999999983 33222 23333221
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCceEEEEEeCccccCc------cC--------hhhhhhhhcc--CC
Q 002362 242 FRVAKAIVEALDGHESRLGEFQSLIKHIYE-SVAGMCFLLVLDDVWDGNY------MK--------WEPFFHCLKN--GL 304 (930)
Q Consensus 242 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~------~~--------~~~l~~~l~~--~~ 304 (930)
.. ....+.+.....+.. .-...+.+|++|+++..-. .. ...+...+.. ..
T Consensus 253 -----------~s--k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 253 -----------IQ--KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp -----------CC--SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred -----------hh--ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 01 111222333333333 3346679999999964210 00 1112222221 23
Q ss_pred CCcEEEEEcCChHHHh-hh-C---CcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCc
Q 002362 305 HRSKILVTTRKKSVAS-MM-G---STNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGL 372 (930)
Q Consensus 305 ~gs~iivTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~gl 372 (930)
.+..||.||...+... .+ . -+..+++...+.++..++|+.+.-... ....-+ ...|++.+.|.
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCC----HHHHHHHCCSC
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCC----HHHHHHhCCCC
Confidence 3455677776654322 11 1 145788988899988999987763321 111112 34566777764
No 230
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.32 E-value=0.0015 Score=78.48 Aligned_cols=146 Identities=15% Similarity=0.130 Sum_probs=80.2
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhc------CCeEEEEEeCCCccHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRK------FDKILWVCVSETFEEFR 243 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~vs~~~~~~~ 243 (930)
+.++||+.+++++...|... ...-+.++|++|+|||++|+.+++. +... .+.. ++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~------~~~~vLL~G~pGtGKT~la~~la~~--l~~~~~p~~l~~~~-~~~~~~------ 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKR-VMTLDM------ 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCC-EECC--------
T ss_pred CCccCchHHHHHHHHHHhCC------CCCCeEEECCCCCCHHHHHHHHHHH--HhcCCCChhhcCCe-EEEecc------
Confidence 46999999999999999753 2234789999999999999999873 3211 1111 111111
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChHHHhh--
Q 002362 244 VAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKSVASM-- 321 (930)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~-- 321 (930)
.....+. -...+ ...+......++.+|++|.- .+....+...+.. ...++|.||........
T Consensus 245 -----g~~~~G~--~e~~l---~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~ 308 (758)
T 3pxi_A 245 -----GTKYRGE--FEDRL---KKVMDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIE 308 (758)
T ss_dssp ---------------CTTH---HHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHT
T ss_pred -----cccccch--HHHHH---HHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHhc--CCEEEEeCCChHHHHHHhh
Confidence 0000000 01112 22222333467789999921 1222234333432 24566666665442111
Q ss_pred -----hCCcceEeCCCCChHHHHHHHHHHH
Q 002362 322 -----MGSTNIISIKELTEEECRLLFNKIA 346 (930)
Q Consensus 322 -----~~~~~~~~l~~L~~~~~~~lf~~~~ 346 (930)
..-...+.+...+.++..+++....
T Consensus 309 ~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1113579999999999999998654
No 231
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.26 E-value=0.0002 Score=74.19 Aligned_cols=157 Identities=12% Similarity=0.090 Sum_probs=80.7
Q ss_pred CceecchhhHHHHHHHhccCCCC------CCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSD------SPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFR 243 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 243 (930)
.+++|.+..++.+.+.+..-... +....+-+.|+|++|+|||+||+.+++. ....|- .+..+.-.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~~---~v~~~~~~~--- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPFF---SMGGSSFIE--- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCCC---CCCSCTTTT---
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCEE---EechHHHHH---
Confidence 46899988877777665310000 0011233789999999999999999883 322221 111111100
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCcc---------------ChhhhhhhhccC---CC
Q 002362 244 VAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYM---------------KWEPFFHCLKNG---LH 305 (930)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~---------------~~~~l~~~l~~~---~~ 305 (930)
.+.+.. ...... .+......+..+|++|+++.-... ....+...+... ..
T Consensus 83 -------~~~~~~--~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 83 -------MFVGLG--ASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp -------SCSSSC--SSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred -------hhcchH--HHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 010100 011111 112222345679999999653211 122233333221 12
Q ss_pred CcEEEEEcCChHHHh--hhC---CcceEeCCCCChHHHHHHHHHHH
Q 002362 306 RSKILVTTRKKSVAS--MMG---STNIISIKELTEEECRLLFNKIA 346 (930)
Q Consensus 306 gs~iivTtr~~~v~~--~~~---~~~~~~l~~L~~~~~~~lf~~~~ 346 (930)
...||.||....... ... ....+.+...+.++..+++...+
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 245667776553211 111 23568888899999888887765
No 232
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.21 E-value=0.0017 Score=67.95 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=22.8
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhch
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
...+.+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35678899999999999999999983
No 233
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.15 E-value=0.0031 Score=67.45 Aligned_cols=153 Identities=12% Similarity=0.140 Sum_probs=85.8
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
..++|+++.++.+...+... .-+.++|.+|+|||+||+.+.+ ..... ...+.++......++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~--~~~~~---~~~i~~~~~~~~~~l~g~~~ 93 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAK--TMDLD---FHRIQFTPDLLPSDLIGTMI 93 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHH--HTTCC---EEEEECCTTCCHHHHHEEEE
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHH--HhCCC---eEEEecCCCCChhhcCCcee
Confidence 35889999999988888642 2588999999999999999977 22221 23344443333333221100
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHhcC--ceEEEEEeCccccCccChhhhhhhhccC-----------CCCcEEEEEcCCh
Q 002362 250 EALDGHESRLGEFQSLIKHIYESVAG--MCFLLVLDDVWDGNYMKWEPFFHCLKNG-----------LHRSKILVTTRKK 316 (930)
Q Consensus 250 ~~l~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~~ 316 (930)
+. ....... ...+ ...++++|++..........+...+..+ .....|+.|+...
T Consensus 94 --~~-~~~~~~~----------~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 94 --YN-QHKGNFE----------VKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp --EE-TTTTEEE----------EEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred --ec-CCCCceE----------eccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 00 0000000 0001 0248999999876544444444444321 2345566566532
Q ss_pred H------HH-hhhCC-cceEeCCCCChHHHHHHHHHHHcC
Q 002362 317 S------VA-SMMGS-TNIISIKELTEEECRLLFNKIAFS 348 (930)
Q Consensus 317 ~------v~-~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~ 348 (930)
. +. ....- ...+.+.+.+.++-.+++.+.+..
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 2 11 11111 225899999999999999887643
No 234
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.06 E-value=0.0006 Score=71.86 Aligned_cols=119 Identities=16% Similarity=0.198 Sum_probs=59.2
Q ss_pred hhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHH-hcCCeEEEEEeCCCccHHHHHHHHHHHhcC
Q 002362 176 VDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVK-RKFDKILWVCVSETFEEFRVAKAIVEALDG 254 (930)
Q Consensus 176 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 254 (930)
....+.+.+++..... .....+.|+|.+|+|||+||+.+++. .. ..-..+++++++ ++..++...+..
T Consensus 134 ~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~~------~l~~~l~~~~~~ 202 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHFP------SFAIDVKNAISN 202 (308)
T ss_dssp HHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEHH------HHHHHHHCCCC-
T ss_pred HHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEHH------HHHHHHHHHhcc
Confidence 3344555556543221 12467899999999999999999984 33 333345566553 333333322211
Q ss_pred CCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChh--hhhh-hhccC-CCCcEEEEEcCC
Q 002362 255 HESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWE--PFFH-CLKNG-LHRSKILVTTRK 315 (930)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~--~l~~-~l~~~-~~gs~iivTtr~ 315 (930)
. ..... ...+... -+|||||+.......|. .+.. .+... ..+..+|+||..
T Consensus 203 ~-----~~~~~----~~~~~~~-~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~ 257 (308)
T 2qgz_A 203 G-----SVKEE----IDAVKNV-PVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNY 257 (308)
T ss_dssp --------CCT----THHHHTS-SEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESS
T ss_pred c-----hHHHH----HHHhcCC-CEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 1 01111 1122222 38999999654333442 2333 22221 123458888874
No 235
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.05 E-value=0.0014 Score=78.84 Aligned_cols=135 Identities=17% Similarity=0.204 Sum_probs=73.5
Q ss_pred CceecchhhHHHHHHHhccCCCC---CCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSD---SPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAK 246 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 246 (930)
..++|.+..++.+...+.....+ .......+.++|++|+|||++|+.+++. .. ...+.+.+++......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchhh---
Confidence 35889998888888776532211 0234568999999999999999999873 31 2344455543221100
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHh-cCceEEEEEeCccccCccChhhhhhhhccCC-----------CCcEEEEEcC
Q 002362 247 AIVEALDGHESRLGEFQSLIKHIYESV-AGMCFLLVLDDVWDGNYMKWEPFFHCLKNGL-----------HRSKILVTTR 314 (930)
Q Consensus 247 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 314 (930)
+ ..+-+..+.....++ ...+...+ +...-+|+||++.....+....+...+..+. ....||.||.
T Consensus 530 -~-~~l~g~~~g~~g~~~-~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN 606 (758)
T 1r6b_X 530 -V-SRLIGAPPGYVGFDQ-GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_dssp -C-SSSCCCCSCSHHHHH-TTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEEC
T ss_pred -H-hhhcCCCCCCcCccc-cchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecC
Confidence 0 000111111111111 01112222 2345689999998766555556666655331 2345777876
Q ss_pred C
Q 002362 315 K 315 (930)
Q Consensus 315 ~ 315 (930)
.
T Consensus 607 ~ 607 (758)
T 1r6b_X 607 A 607 (758)
T ss_dssp S
T ss_pred c
Confidence 4
No 236
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.93 E-value=0.0037 Score=71.41 Aligned_cols=162 Identities=19% Similarity=0.199 Sum_probs=79.3
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.+++|-++..+.+.+.+.-..-.......++.++|++|+||||||+.++.. ....| .-+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHHH
Confidence 457888877777755443111000114568999999999999999999873 32222 2233333222222211111
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCcc----ChhhhhhhhccCC---------------CCcEEE
Q 002362 250 EALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYM----KWEPFFHCLKNGL---------------HRSKIL 310 (930)
Q Consensus 250 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~ii 310 (930)
...+. ........+. ......-+++||+++..... ....+...+.... ....||
T Consensus 156 ~~ig~------~~~~~~~~~~-~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVGA------MPGRIIQGMK-KAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHH-TTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhcc------CchHHHHHHH-HhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 11110 0011111121 12223348889999764322 1233444442211 234667
Q ss_pred EEcCChH-----HHhhhCCcceEeCCCCChHHHHHHHHHHH
Q 002362 311 VTTRKKS-----VASMMGSTNIISIKELTEEECRLLFNKIA 346 (930)
Q Consensus 311 vTtr~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 346 (930)
.||.... ..+.+ ..+++.+++.++-.+++.++.
T Consensus 229 ~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 6766532 22333 478999999998888887654
No 237
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.92 E-value=0.0021 Score=78.06 Aligned_cols=136 Identities=13% Similarity=0.228 Sum_probs=72.9
Q ss_pred ceecchhhHHHHHHHhccCCC---CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHH
Q 002362 171 EICGRVDEKNELLSKLLCESS---DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKA 247 (930)
Q Consensus 171 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 247 (930)
.++|.+..++.+...+..... +.......+.|+|+.|+|||++|+.+++. ....-...+.+.++.-..... ...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~~-~s~ 635 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKHA-VSR 635 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSGG-GGG
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchhH-HHH
Confidence 579999988888887754321 11234568999999999999999999873 211112234455443221100 000
Q ss_pred HHHHhcCCC--CCCccHHHHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCC-----------CCcEEEEEcC
Q 002362 248 IVEALDGHE--SRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGL-----------HRSKILVTTR 314 (930)
Q Consensus 248 i~~~l~~~~--~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 314 (930)
+ ++... ........+...+.. ...-+|+||++..........+...+..+. .+..||+||.
T Consensus 636 l---~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn 709 (854)
T 1qvr_A 636 L---IGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSN 709 (854)
T ss_dssp C-----------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECC
T ss_pred H---cCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecC
Confidence 0 00000 000001112222221 233589999998766555566666665431 2445888887
Q ss_pred C
Q 002362 315 K 315 (930)
Q Consensus 315 ~ 315 (930)
.
T Consensus 710 ~ 710 (854)
T 1qvr_A 710 L 710 (854)
T ss_dssp T
T ss_pred c
Confidence 5
No 238
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.90 E-value=0.0043 Score=73.16 Aligned_cols=180 Identities=12% Similarity=0.075 Sum_probs=98.0
Q ss_pred CCceecchhhHHHHHHHhcc----CC---CCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccH
Q 002362 169 EEEICGRVDEKNELLSKLLC----ES---SDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEE 241 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 241 (930)
-.++.|-++.+++|.+.+.- +. .-+-..++-|.++|++|+|||+||+.+++. ...+ .+.|..++
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~---~~~v~~~~---- 273 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE---- 273 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCE---EEEEEHHH----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCe---EEEEEhHH----
Confidence 34678888887777766531 11 111235678999999999999999999984 3222 23333321
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCceEEEEEeCccccCc------cCh-h----hhhhhhccC--CCCcE
Q 002362 242 FRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMCFLLVLDDVWDGNY------MKW-E----PFFHCLKNG--LHRSK 308 (930)
Q Consensus 242 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------~~~-~----~l~~~l~~~--~~gs~ 308 (930)
+. ... .......+...+.......+.+|++|+++.--. ... . .+...+... ..+..
T Consensus 274 ------l~----sk~-~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 274 ------IM----SKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ------HH----SSC-TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred ------hh----ccc-chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 11 111 111122233333344457789999999964211 111 1 122222221 22344
Q ss_pred EEEEcCChH-HHhhh----CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCch
Q 002362 309 ILVTTRKKS-VASMM----GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLP 373 (930)
Q Consensus 309 iivTtr~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glP 373 (930)
||.||...+ +-..+ .-...+++...+.++-.++|+.+.-... ....-+ ...|++++.|.-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~-~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE-ECTTCC----HHHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC-CCcccC----HHHHHHhcCCCC
Confidence 555665543 22222 1245789999999999999987653211 111112 455778888764
No 239
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.87 E-value=0.0006 Score=70.61 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=46.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEe--CCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCV--SETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVA 274 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (930)
-+++.|+|++|+||||||.+++.. .-..++|+++ .+..+. . ..+.++....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~----------~------~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG----------Y------NTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT----------C------BCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh----------h------hcCHHHHHHHHHHHHh
Confidence 457789999999999999999873 1224567777 332110 0 0345666666666666
Q ss_pred CceEEEEEeCccc
Q 002362 275 GMCFLLVLDDVWD 287 (930)
Q Consensus 275 ~kr~LlVlDdv~~ 287 (930)
..+ +||+|++..
T Consensus 182 ~~~-LLVIDsI~a 193 (331)
T 2vhj_A 182 QHR-VIVIDSLKN 193 (331)
T ss_dssp HCS-EEEEECCTT
T ss_pred hCC-EEEEecccc
Confidence 555 999999954
No 240
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.74 E-value=0.027 Score=60.34 Aligned_cols=157 Identities=8% Similarity=-0.068 Sum_probs=99.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHH-Hhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYE-SVA 274 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~ 274 (930)
-..+..++|..|.||++.|+.+.+.. ....|+....+.+....+.. ++...+.. -+-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~---------------------~l~~~~~~~plf 74 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVA-AAQGFEEHHTFSIDPNTDWN---------------------AIFSLCQAMSLF 74 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHH-HHHTCCEEEEEECCTTCCHH---------------------HHHHHHHHHHHC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHH-HhCCCCeeEEEEecCCCCHH---------------------HHHHHhcCcCCc
Confidence 34689999999999999999988742 22345432222333333333 33322221 234
Q ss_pred CceEEEEEeCccc-cCccChhhhhhhhccCCCCcEEEEEcCC-------hHHHhhh-CCcceEeCCCCChHHHHHHHHHH
Q 002362 275 GMCFLLVLDDVWD-GNYMKWEPFFHCLKNGLHRSKILVTTRK-------KSVASMM-GSTNIISIKELTEEECRLLFNKI 345 (930)
Q Consensus 275 ~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~-------~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 345 (930)
+++-++|+|++.. .....++.+...+....+++.+|++|.. ..+...+ .....++..++++++....+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 5566889999876 4445677788777766667777766542 2344443 33568999999999999888877
Q ss_pred HcCCCCchhhHHHHHHHHHHHHHcCCchhHHHH
Q 002362 346 AFSDRPIEEREKLEQIGRKIANKCKGLPLAAKI 378 (930)
Q Consensus 346 ~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~ 378 (930)
+-..+..-. .+.+..+++.++|...++..
T Consensus 155 ~~~~g~~i~----~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 155 AKQLNLELD----DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHTTCEEC----HHHHHHHHHSSTTCHHHHHH
T ss_pred HHHcCCCCC----HHHHHHHHHHhchHHHHHHH
Confidence 643332111 23467788999998877654
No 241
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.70 E-value=0.015 Score=63.39 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=14.5
Q ss_pred ccccCccEEEeeCCCCCCCCC--CCCCCCCcceeee
Q 002362 798 MSLTNLRSLDLDDCENCEKLP--PLGKLPSLEKLSI 831 (930)
Q Consensus 798 ~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L 831 (930)
..+++|+.+.+.++... .++ .+.++++|+.+.|
T Consensus 283 ~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp TTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccc-eehhhhhcCCCCCCEEEc
Confidence 34455555555443222 111 1444555555555
No 242
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.64 E-value=0.023 Score=61.84 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=38.6
Q ss_pred CCCCCCcceEEEeeccCCCCCCcccccccCccEEEeeCCCCCCCCC--CCCCCCCcceeeeccCcCceEeCCccccCccc
Q 002362 773 LQPPPNLRKLLIGSYRGKTVFPPWMMSLTNLRSLDLDDCENCEKLP--PLGKLPSLEKLSISFMCSVKRVDNEILGIEIT 850 (930)
Q Consensus 773 l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 850 (930)
+..+.+|+.+.+..+ +...-...+.++.+|+.+.+... ...++ .+..+++|+.+.+.+ ..++.++...+.
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~---- 307 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFM---- 307 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTT----
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccc-cccceehhhhhc----
Confidence 344556666665443 22211333445666666666543 12222 255666666666642 224444443332
Q ss_pred ccCccccceeec
Q 002362 851 IAFPKLKSLTIS 862 (930)
Q Consensus 851 ~~f~~L~~L~l~ 862 (930)
.+.+|+.+.+.
T Consensus 308 -~c~~L~~i~lp 318 (379)
T 4h09_A 308 -DCVKLSSVTLP 318 (379)
T ss_dssp -TCTTCCEEECC
T ss_pred -CCCCCCEEEcC
Confidence 45556555553
No 243
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.64 E-value=0.0083 Score=59.65 Aligned_cols=86 Identities=22% Similarity=0.187 Sum_probs=52.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcC------------CCCCCccHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDG------------HESRLGEFQ 263 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~------------~~~~~~~~~ 263 (930)
.-.++.|+|.+|+||||||..++. ..-..++|+.....++...+.. +.+.++. ......+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 345899999999999999999976 2235788888777556555443 3332211 111122223
Q ss_pred HHHHHHHHHhcCceEEEEEeCccc
Q 002362 264 SLIKHIYESVAGMCFLLVLDDVWD 287 (930)
Q Consensus 264 ~~~~~l~~~l~~kr~LlVlDdv~~ 287 (930)
+....+...+..+.-+||+|.+-.
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 344444444444466899998743
No 244
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.54 E-value=0.026 Score=61.31 Aligned_cols=49 Identities=24% Similarity=0.242 Sum_probs=34.0
Q ss_pred ceecchhhHHHHHHHhc----cCC--------------------CCCCCCeEEEEEEecCCChHHHHHHHHhc
Q 002362 171 EICGRVDEKNELLSKLL----CES--------------------SDSPKGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 171 ~~vGr~~~~~~l~~~L~----~~~--------------------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.++|.+..++.+...+. ... .+.......+.++|++|+|||++|+.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 47888888888777662 000 00011234688999999999999999987
No 245
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.51 E-value=0.018 Score=58.80 Aligned_cols=156 Identities=13% Similarity=0.172 Sum_probs=78.4
Q ss_pred CceecchhhHHHHHHHhccCCCC------CCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHH
Q 002362 170 EEICGRVDEKNELLSKLLCESSD------SPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFR 243 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 243 (930)
++++|.+..+.++.+....-... +-.-.+-+.|+|++|+||||||+.++.. .. ...+.+... +
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~--~~---~~~i~~~~~------~ 84 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGS------D 84 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHH------H
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hC---CCEEEeeHH------H
Confidence 46888876655554433210000 0001122899999999999999999873 22 223333221 1
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHh-cCceEEEEEeCccccC----------ccCh----hhhhhhhccCCC--C
Q 002362 244 VAKAIVEALDGHESRLGEFQSLIKHIYESV-AGMCFLLVLDDVWDGN----------YMKW----EPFFHCLKNGLH--R 306 (930)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------~~~~----~~l~~~l~~~~~--g 306 (930)
+ .... ..........+.+.. .....++++|++.... ...+ ..+...+..+.. .
T Consensus 85 ~----~~~~------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~ 154 (254)
T 1ixz_A 85 F----VEMF------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 154 (254)
T ss_dssp H----HHSC------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCC
T ss_pred H----HHHH------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCC
Confidence 1 1100 001111222222322 2446799999994311 0111 223333333222 2
Q ss_pred cEEEEEcCChHHHhh-h----CCcceEeCCCCChHHHHHHHHHHH
Q 002362 307 SKILVTTRKKSVASM-M----GSTNIISIKELTEEECRLLFNKIA 346 (930)
Q Consensus 307 s~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~ 346 (930)
..++.||....+... + .-...+++...+.++-.++++.++
T Consensus 155 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 155 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred EEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 334556665543221 1 224578899999998888887765
No 246
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.44 E-value=0.0049 Score=58.93 Aligned_cols=118 Identities=17% Similarity=0.105 Sum_probs=67.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCC---CccHHHHHHHHHHHh---cCC-CCCC-------ccH
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSE---TFEEFRVAKAIVEAL---DGH-ESRL-------GEF 262 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~~~l---~~~-~~~~-------~~~ 262 (930)
...|-|++-.|.||||+|--..- +...+=-.+.++.... ......++..+.-.+ +.. .... ...
T Consensus 28 ~g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 35677777778999999987776 4444444566665433 233334443331000 000 0011 111
Q ss_pred HHHHHHHHHHhcCceE-EEEEeCcccc---CccChhhhhhhhccCCCCcEEEEEcCCh
Q 002362 263 QSLIKHIYESVAGMCF-LLVLDDVWDG---NYMKWEPFFHCLKNGLHRSKILVTTRKK 316 (930)
Q Consensus 263 ~~~~~~l~~~l~~kr~-LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTtr~~ 316 (930)
.......++.+.+.+| |||||++-.. .....+.+...+........||+|+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 2334445556655555 9999999432 2344566777777766778899999985
No 247
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.35 E-value=0.026 Score=58.14 Aligned_cols=126 Identities=13% Similarity=0.157 Sum_probs=68.6
Q ss_pred EEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH-hcCceE
Q 002362 200 ISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYES-VAGMCF 278 (930)
Q Consensus 200 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~ 278 (930)
+.|+|++|+||||||+.++.. ... ..+++..++-.+. ...+.......+.+. -.....
T Consensus 47 vlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999873 211 2444443321110 000111122222222 234568
Q ss_pred EEEEeCccccCc-------cCh----hhhhhhhccCC--CCcEEEEEcCChHHHhh--h---CCcceEeCCCCChHHHHH
Q 002362 279 LLVLDDVWDGNY-------MKW----EPFFHCLKNGL--HRSKILVTTRKKSVASM--M---GSTNIISIKELTEEECRL 340 (930)
Q Consensus 279 LlVlDdv~~~~~-------~~~----~~l~~~l~~~~--~gs~iivTtr~~~v~~~--~---~~~~~~~l~~L~~~~~~~ 340 (930)
++++|+++.... ... ..+...+..+. ...-++.+|....+... . .-...+.+...+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 999999964210 011 12222333322 23445566666544321 1 225678899999999999
Q ss_pred HHHHHH
Q 002362 341 LFNKIA 346 (930)
Q Consensus 341 lf~~~~ 346 (930)
+|+...
T Consensus 186 il~~~~ 191 (274)
T 2x8a_A 186 ILKTIT 191 (274)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 998765
No 248
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.32 E-value=0.041 Score=56.88 Aligned_cols=178 Identities=15% Similarity=0.186 Sum_probs=87.9
Q ss_pred CCceecchhhHHHHHHHhccCCC-------CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccH
Q 002362 169 EEEICGRVDEKNELLSKLLCESS-------DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEE 241 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 241 (930)
-++++|.+..++++.+....-.. +-.-... +.|+|+.|+||||||+.++.. .. ...+.+...
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~--~~---~~~i~~~~~----- 107 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE--AR---VPFITASGS----- 107 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH--cC---CCEEEecHH-----
Confidence 45688988766665544321100 0001122 899999999999999999873 22 223333321
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh-cCceEEEEEeCccccC----------ccChh----hhhhhhccCCC-
Q 002362 242 FRVAKAIVEALDGHESRLGEFQSLIKHIYESV-AGMCFLLVLDDVWDGN----------YMKWE----PFFHCLKNGLH- 305 (930)
Q Consensus 242 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------~~~~~----~l~~~l~~~~~- 305 (930)
.+ .... ..........+.+.. .....++|+|++.... ...+. .+...+..+..
T Consensus 108 -~~----~~~~------~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 108 -DF----VEMF------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp -HH----HHST------TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred -HH----HHHH------hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 11 1100 001111122222222 2456799999995310 01111 22222322222
Q ss_pred -CcEEEEEcCChHHHh-h-h---CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCch
Q 002362 306 -RSKILVTTRKKSVAS-M-M---GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLP 373 (930)
Q Consensus 306 -gs~iivTtr~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glP 373 (930)
...++.||....+.. . . .-...+++...+.++-.+++..++-+. ....... ...+++.+.|..
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC-CCCcccC----HHHHHHHcCCCC
Confidence 233445555543321 1 1 234578999999999888888765321 1111111 234666777754
No 249
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.32 E-value=0.03 Score=62.58 Aligned_cols=176 Identities=13% Similarity=0.100 Sum_probs=90.8
Q ss_pred CCceecchhhHHHHHHHh---ccCCC--C-CCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHH
Q 002362 169 EEEICGRVDEKNELLSKL---LCESS--D-SPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEF 242 (930)
Q Consensus 169 ~~~~vGr~~~~~~l~~~L---~~~~~--~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 242 (930)
-.+++|.++.++++.+.. ..... + +-.-.+-+.|+|++|+||||||+.++.. .. ...+.+..+.-..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~---~~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGSDFVE-- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TT---CCEEEEEGGGGTS--
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hC---CCEEEEehhHHHH--
Confidence 356899887666665543 22100 0 0011223899999999999999999873 22 2234444332110
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc----CceEEEEEeCccccCc----------cCh----hhhhhhhccCC
Q 002362 243 RVAKAIVEALDGHESRLGEFQSLIKHIYESVA----GMCFLLVLDDVWDGNY----------MKW----EPFFHCLKNGL 304 (930)
Q Consensus 243 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~kr~LlVlDdv~~~~~----------~~~----~~l~~~l~~~~ 304 (930)
.. .......+...++ ....++++|+++.-.. ..+ ..+...+..+.
T Consensus 103 ------------~~-----~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 103 ------------MF-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp ------------SC-----TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred ------------hh-----hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 00 0011122223332 2347999999954211 111 22333333222
Q ss_pred --CCcEEEEEcCChHHHhh--h---CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCch
Q 002362 305 --HRSKILVTTRKKSVASM--M---GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLP 373 (930)
Q Consensus 305 --~gs~iivTtr~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glP 373 (930)
.+..|+.||....+... . .....+.+...+.++-.++++.++-+..- ..... ...|++.+.|..
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l-~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCC-CCSST----THHHHTTSCSCC
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCC-ChHHH----HHHHHHhcCCCC
Confidence 23456666666554221 1 12457899999999999998876532111 11111 344677777765
No 250
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.30 E-value=0.013 Score=58.67 Aligned_cols=115 Identities=17% Similarity=0.074 Sum_probs=62.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCC-------------------
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHES------------------- 257 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------------------- 257 (930)
-.++.|+|.+|+|||||++.++... ...=..++|+.... ....+...+. .++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~--~~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG--LRDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH--HHHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH--HHCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 3589999999999999999998632 22223566766543 3334433332 3321100
Q ss_pred ----CCccHHHHHHHHHHHhc---CceEEEEEeCcccc---CccChhhhhhhhcc--CCCCcEEEEEcCCh
Q 002362 258 ----RLGEFQSLIKHIYESVA---GMCFLLVLDDVWDG---NYMKWEPFFHCLKN--GLHRSKILVTTRKK 316 (930)
Q Consensus 258 ----~~~~~~~~~~~l~~~l~---~kr~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~iivTtr~~ 316 (930)
...+.+++...+.+.+. .+..+||+|..-.. +......+...+.. ...|..||+||...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11144555555554442 23349999998632 22223334444332 12467788888865
No 251
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.27 E-value=0.0073 Score=72.42 Aligned_cols=158 Identities=14% Similarity=0.093 Sum_probs=85.4
Q ss_pred cCCceecchhhHHHHHHHhccCCC-------CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCcc
Q 002362 168 DEEEICGRVDEKNELLSKLLCESS-------DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFE 240 (930)
Q Consensus 168 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 240 (930)
.-.+++|.+..++++.+++...-. -+-.....|.|+|++|+||||||+.++.. ....| +.+..+.
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~--- 273 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE--- 273 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH---
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH---
Confidence 335689999999888887743100 00123457999999999999999999873 22222 3333211
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHH-HHHHHHHHhcCceEEEEEeCccccCcc-----------ChhhhhhhhccC--CCC
Q 002362 241 EFRVAKAIVEALDGHESRLGEFQS-LIKHIYESVAGMCFLLVLDDVWDGNYM-----------KWEPFFHCLKNG--LHR 306 (930)
Q Consensus 241 ~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l~~~--~~g 306 (930)
+... ...+... +...+.........++++|++...... ....+...+... ..+
T Consensus 274 -----------l~~~--~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~ 340 (806)
T 1ypw_A 274 -----------IMSK--LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp -----------HSSS--STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSC
T ss_pred -----------hhhh--hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccccc
Confidence 1010 0111122 222233333455689999999532110 011222222221 223
Q ss_pred cEEEEEcCChHHH-hhh---C-CcceEeCCCCChHHHHHHHHHHH
Q 002362 307 SKILVTTRKKSVA-SMM---G-STNIISIKELTEEECRLLFNKIA 346 (930)
Q Consensus 307 s~iivTtr~~~v~-~~~---~-~~~~~~l~~L~~~~~~~lf~~~~ 346 (930)
..||.||...... ..+ + -...+.+...+.++..+++...+
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 4566666654221 111 1 13467888889999999988765
No 252
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.26 E-value=0.0082 Score=60.77 Aligned_cols=91 Identities=18% Similarity=0.148 Sum_probs=53.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHh----cCCeEEEEEeCCCccHHHHHHHHHHHhcCCC---------CCCccH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKR----KFDKILWVCVSETFEEFRVAKAIVEALDGHE---------SRLGEF 262 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------~~~~~~ 262 (930)
.-.++.|+|.+|+|||||++.++....... .-..++|+.....++...+. ++++.++... ....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 346999999999999999999876311111 13578899887755554432 3344443211 011122
Q ss_pred H---HHHHHHHHHhc-CceEEEEEeCccc
Q 002362 263 Q---SLIKHIYESVA-GMCFLLVLDDVWD 287 (930)
Q Consensus 263 ~---~~~~~l~~~l~-~kr~LlVlDdv~~ 287 (930)
. +....+.+.+. .+.-+||+|.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 2 23333444443 4667999999854
No 253
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.24 E-value=0.008 Score=64.74 Aligned_cols=44 Identities=25% Similarity=0.299 Sum_probs=32.4
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhc
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+++|.+..++.+...+.... ..-+.|+|.+|+|||++|+.+++
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHH
Confidence 458999886666544443221 22389999999999999999987
No 254
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.14 E-value=0.0047 Score=61.04 Aligned_cols=114 Identities=13% Similarity=-0.056 Sum_probs=63.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCC--CCccHHHHHHHHHHHh
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHES--RLGEFQSLIKHIYESV 273 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l 273 (930)
.-.++.|+|..|+||||++..+.+ +...+-..++.+....+. + ....|++.++.... ......++...+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 347899999999999999988887 444444445555433321 1 12233444432211 1123344444554444
Q ss_pred cCceE-EEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChH
Q 002362 274 AGMCF-LLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKS 317 (930)
Q Consensus 274 ~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 317 (930)
.+.++ +||+|.+..-+.+..+.+ ..+.+ .|-.||+|-+..+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEecccc
Confidence 44444 999999965332222222 33333 2678999998543
No 255
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.12 E-value=0.018 Score=61.28 Aligned_cols=85 Identities=21% Similarity=0.215 Sum_probs=55.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHES-----RLGEFQSLIKHIY 270 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 270 (930)
.-.++.|+|.+|+||||||..++.. ....=..++|+.....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 4579999999999999999999874 33322457899887766654 3444443211 1234555555555
Q ss_pred HHhc-CceEEEEEeCccc
Q 002362 271 ESVA-GMCFLLVLDDVWD 287 (930)
Q Consensus 271 ~~l~-~kr~LlVlDdv~~ 287 (930)
..++ .+.-++|+|.+-.
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5443 4455899999843
No 256
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.95 E-value=0.023 Score=54.17 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHhch
Q 002362 199 IISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 257
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.90 E-value=0.033 Score=57.43 Aligned_cols=82 Identities=10% Similarity=0.124 Sum_probs=54.0
Q ss_pred EEEEEecCCChHHHHHHHHhchHHHHhc--CCeEEEEEeCCCccHHHHHHHHHHHhcCCCC-----CCccHHHH-HHHHH
Q 002362 199 IISIIGMGGMGKTTLAQLACNHEEVKRK--FDKILWVCVSETFEEFRVAKAIVEALDGHES-----RLGEFQSL-IKHIY 270 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~l~ 270 (930)
++-|.|.+|+||||||.+++.. .... =..++||+....++.. .+++++.... ...+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7899999999999999888774 3333 2568999988877754 2566654321 12344554 33332
Q ss_pred HH--h-cCceEEEEEeCccc
Q 002362 271 ES--V-AGMCFLLVLDDVWD 287 (930)
Q Consensus 271 ~~--l-~~kr~LlVlDdv~~ 287 (930)
.. + .++.-+||+|-+-.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 22 2 35677999999854
No 258
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.90 E-value=0.024 Score=60.70 Aligned_cols=85 Identities=19% Similarity=0.160 Sum_probs=55.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHES-----RLGEFQSLIKHIY 270 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 270 (930)
.-.++.|+|.+|+||||||..++.. ....-..++|++....++.. .++.++.... +..+.+++...+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 3458899999999999999988774 33333478999988766644 2344433211 1234566666665
Q ss_pred HHhc-CceEEEEEeCccc
Q 002362 271 ESVA-GMCFLLVLDDVWD 287 (930)
Q Consensus 271 ~~l~-~kr~LlVlDdv~~ 287 (930)
...+ ...-+||+|.+-.
T Consensus 146 ~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHTTTCCSEEEEECTTT
T ss_pred HHHhcCCCCEEEEeChHH
Confidence 5554 3345899999843
No 259
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.82 E-value=0.024 Score=60.46 Aligned_cols=85 Identities=18% Similarity=0.133 Sum_probs=54.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHES-----RLGEFQSLIKHIY 270 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 270 (930)
.-+++.|+|.+|+||||||.+++.. ....=..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 3468999999999999999999863 33333568999988766643 2444442211 1224555555554
Q ss_pred HHhc-CceEEEEEeCccc
Q 002362 271 ESVA-GMCFLLVLDDVWD 287 (930)
Q Consensus 271 ~~l~-~kr~LlVlDdv~~ 287 (930)
...+ .+.-+||+|.+-.
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 4443 3455999999854
No 260
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.77 E-value=0.034 Score=59.34 Aligned_cols=57 Identities=23% Similarity=0.361 Sum_probs=39.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHh----cCCeEEEEEeCCCccHHHHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKR----KFDKILWVCVSETFEEFRVAKAIVEALD 253 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 253 (930)
.-.++.|+|.+|+||||||..++....... .-..++|++....++...+.. ++..++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 557999999999999999998876311111 224789999888777766543 344443
No 261
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.73 E-value=0.026 Score=59.81 Aligned_cols=57 Identities=21% Similarity=0.265 Sum_probs=39.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhc----CCeEEEEEeCCCccHHHHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRK----FDKILWVCVSETFEEFRVAKAIVEALD 253 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~ 253 (930)
.-.++.|+|.+|+||||||..++........ -..++|++....++...+. ++++.++
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g 166 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALG 166 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhC
Confidence 3468999999999999999988763111110 2478999988877766654 3445543
No 262
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.70 E-value=0.021 Score=60.63 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=39.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHh---------cC-----CeEEEEEeCCCccHHHHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKR---------KF-----DKILWVCVSETFEEFRVAKAIVEALD 253 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~i~~~l~ 253 (930)
.-.++.|+|.+|+||||||..++....... .. ..++|++....++.+.+.. +++.++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g 167 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAG 167 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 457999999999999999998876321111 11 4689999888877766653 344443
No 263
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.61 E-value=0.013 Score=61.93 Aligned_cols=97 Identities=14% Similarity=0.086 Sum_probs=53.6
Q ss_pred HHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHh-cCCe-EEEEEeCCCccHHHHHHHHHHHhcC---
Q 002362 180 NELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKR-KFDK-ILWVCVSETFEEFRVAKAIVEALDG--- 254 (930)
Q Consensus 180 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~-~~wv~vs~~~~~~~~~~~i~~~l~~--- 254 (930)
-++++.+..-. .-..++|+|..|+|||||++.+.+. +.. +=+. ++++-+.+...... ++.+.+..
T Consensus 162 iraID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~--i~~~~~~v~~I~~lIGER~~Ev~---~~~~~~~~~vV 231 (422)
T 3ice_A 162 ARVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQS--IAYNHPDCVLMVLLIDERPEEVT---EMQRLVKGEVV 231 (422)
T ss_dssp HHHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHH--HHHHCTTSEEEEEEESSCHHHHH---HHHTTCSSEEE
T ss_pred ceeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHH--HhhcCCCeeEEEEEecCChHHHH---HHHHHhCeEEE
Confidence 35566665432 3358999999999999999998773 322 2232 44566776543222 23333311
Q ss_pred -CCCCCccHH-----HHHHHHHHHh--cCceEEEEEeCcc
Q 002362 255 -HESRLGEFQ-----SLIKHIYESV--AGMCFLLVLDDVW 286 (930)
Q Consensus 255 -~~~~~~~~~-----~~~~~l~~~l--~~kr~LlVlDdv~ 286 (930)
...+..... ...-.+.+++ +++.+||++||+-
T Consensus 232 ~atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslT 271 (422)
T 3ice_A 232 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 271 (422)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHH
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCch
Confidence 011111111 1111223333 5899999999993
No 264
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.51 E-value=0.031 Score=56.70 Aligned_cols=41 Identities=22% Similarity=0.166 Sum_probs=28.3
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCC
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSE 237 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 237 (930)
.-.+++|+|+.|+|||||++.++..-.. ..-...+|+....
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTLEE 69 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEEccC
Confidence 3468999999999999999998742121 2234566665443
No 265
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.40 E-value=0.037 Score=59.06 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=52.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHES-----RLGEFQSLIKHIY 270 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 270 (930)
.-+++.|.|.+|+||||||.+++.. ....=..++|++....++.. .++.++.... +..+.+++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 3468999999999999999998874 33333478999988776643 2344433211 1123444444444
Q ss_pred HHh-cCceEEEEEeCcc
Q 002362 271 ESV-AGMCFLLVLDDVW 286 (930)
Q Consensus 271 ~~l-~~kr~LlVlDdv~ 286 (930)
... ..+.-+||+|.+-
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 333 2444589999984
No 266
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.29 E-value=0.017 Score=56.50 Aligned_cols=42 Identities=29% Similarity=0.323 Sum_probs=33.3
Q ss_pred chhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhc
Q 002362 175 RVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 175 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
|++.++.+.+.+.... .....+|+|.|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5566777888776542 23568999999999999999999876
No 267
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.29 E-value=0.051 Score=56.73 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=28.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCC-eEEEEEeC
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFD-KILWVCVS 236 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs 236 (930)
-.+++|+|.+|+|||||++.++.. ....-. .++|+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLE 73 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCc
Confidence 358999999999999999999874 322223 46676653
No 268
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.12 E-value=0.047 Score=57.17 Aligned_cols=101 Identities=14% Similarity=0.050 Sum_probs=54.7
Q ss_pred eecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcC--CeEEEEEeCCCccHHHHHHHHH
Q 002362 172 ICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKF--DKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 172 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
++|....+..+...+..... .....+|+|.|..|+||||||+.+.. ...... ..+..+....-+-.........
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~--~~~p~iigI~GpsGSGKSTl~~~L~~--ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~ 144 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPE--PKVPYIIGIAGSVAVGKSTTSRVLKA--LLSRWPDHPNVEVITTDGFLYSNAKLEKQG 144 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCC--CCCCEEEEEECCTTSSHHHHHHHHHH--HHTTSTTCCCEEEEEGGGGBCCHHHHHHTT
T ss_pred hhcchHHHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHH--HhcccCCCCeEEEEeecccccchhhhhhHH
Confidence 35555666666666655432 34678999999999999999998865 222111 2344455433221111111100
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHhcCc
Q 002362 250 EALDGHESRLGEFQSLIKHIYESVAGM 276 (930)
Q Consensus 250 ~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (930)
..-....+...+.+.+.+.+.....++
T Consensus 145 ~~~~~g~P~~~D~~~l~~~L~~L~~g~ 171 (321)
T 3tqc_A 145 LMKRKGFPESYDMPSLLRVLNAIKSGQ 171 (321)
T ss_dssp CGGGTTSGGGBCHHHHHHHHHHHHTTC
T ss_pred HHhhccCcccccHHHHHHHHHhhhccc
Confidence 000112234456666666666655555
No 269
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.09 E-value=0.056 Score=56.16 Aligned_cols=86 Identities=16% Similarity=0.089 Sum_probs=44.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHh-cCCeEEEEEeCC-CccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKR-KFDKILWVCVSE-TFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESV 273 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 273 (930)
...+++|+|.+|+||||++..++.. ... .=..+..+.... .....+.+....+..+.......+...+...+. .+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~--l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~ 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI--SMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LF 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-Hh
Confidence 3569999999999999999999873 332 112455555432 122222233333333222211223334433343 23
Q ss_pred cCceEEEEEeCc
Q 002362 274 AGMCFLLVLDDV 285 (930)
Q Consensus 274 ~~kr~LlVlDdv 285 (930)
.+.=++|+|-.
T Consensus 181 -~~~dlvIiDT~ 191 (296)
T 2px0_A 181 -SEYDHVFVDTA 191 (296)
T ss_dssp -GGSSEEEEECC
T ss_pred -cCCCEEEEeCC
Confidence 33347889943
No 270
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.02 E-value=0.13 Score=51.14 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+++|+|+.|.|||||.+.++.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999976
No 271
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.93 E-value=0.12 Score=53.33 Aligned_cols=81 Identities=16% Similarity=0.112 Sum_probs=44.3
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHh-cCCeEEEEEeCCCccHHHHHHHHHHHh------cC-CCCCCccHHHHH
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKR-KFDKILWVCVSETFEEFRVAKAIVEAL------DG-HESRLGEFQSLI 266 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~i~~~l------~~-~~~~~~~~~~~~ 266 (930)
....+|+|+|..|+||||||+.+........ ....+..|+...-+-.......+.... .. ..+...+.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 4678999999999999999998877422211 123444445443322333444443321 11 124445566666
Q ss_pred HHHHHHhcC
Q 002362 267 KHIYESVAG 275 (930)
Q Consensus 267 ~~l~~~l~~ 275 (930)
+.+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 555554433
No 272
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.88 E-value=0.076 Score=53.17 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+++|+|+.|.|||||.+.++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999976
No 273
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.73 E-value=0.072 Score=58.32 Aligned_cols=87 Identities=18% Similarity=0.151 Sum_probs=49.8
Q ss_pred EEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCcc-HHHHHHHHHHHhc--------CCCCCCccHHH----H
Q 002362 199 IISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFE-EFRVAKAIVEALD--------GHESRLGEFQS----L 265 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~--------~~~~~~~~~~~----~ 265 (930)
.++|+|..|+|||||++.+...... .+-+..+++-+.+..+ ..++..++.+.-. ....+...... .
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~ 231 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALT 231 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHH
Confidence 5899999999999999999884322 2234566777766543 3444444443200 00111111111 1
Q ss_pred HHHHHHHh---cCceEEEEEeCcc
Q 002362 266 IKHIYESV---AGMCFLLVLDDVW 286 (930)
Q Consensus 266 ~~~l~~~l---~~kr~LlVlDdv~ 286 (930)
.-.+.+++ ++++.|+++||+.
T Consensus 232 ~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 232 GLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHhcCCcEEEEeccHH
Confidence 11233333 5899999999993
No 274
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.71 E-value=0.16 Score=51.01 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
-.+++|+|+.|.|||||.+.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999865
No 275
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.57 E-value=0.026 Score=55.47 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=28.8
Q ss_pred hHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhc
Q 002362 178 EKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 178 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
-.++|.+.+... .....+|+|+|..|.|||||++.+..
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445566665532 13567999999999999999999877
No 276
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.45 E-value=0.059 Score=63.54 Aligned_cols=158 Identities=15% Similarity=0.110 Sum_probs=79.0
Q ss_pred cCCceecchhhHHHHHHHhccCCC-------CCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCcc
Q 002362 168 DEEEICGRVDEKNELLSKLLCESS-------DSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFE 240 (930)
Q Consensus 168 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 240 (930)
.-.++.|.++.++++.+.+.-+-. .+-...+-+.++|++|.|||.+|+.+++. ... -++.++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~-----~f~~v~~--- 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQA-----NFISIKG--- 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTC-----EEEECCH---
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCC-----ceEEecc---
Confidence 345677888888887776543211 01234456889999999999999999883 221 2333321
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHH-HhcCceEEEEEeCccccC----------ccCh----hhhhhhhccC--
Q 002362 241 EFRVAKAIVEALDGHESRLGEFQSLIKHIYE-SVAGMCFLLVLDDVWDGN----------YMKW----EPFFHCLKNG-- 303 (930)
Q Consensus 241 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~----------~~~~----~~l~~~l~~~-- 303 (930)
. +++...-+ .. +.....+.+ .-+..+.+|++|+++.-- .... ..+...+...
T Consensus 545 -~----~l~s~~vG-----es-e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 545 -P----ELLTMWFG-----ES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp -H----HHHTTTCS-----SC-HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred -c----hhhccccc-----hH-HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 1 12221111 11 233333333 335678999999996421 0011 1233333321
Q ss_pred CCCcEEEEEcCChH-----HHhhhCCcceEeCCCCChHHHHHHHHHHH
Q 002362 304 LHRSKILVTTRKKS-----VASMMGSTNIISIKELTEEECRLLFNKIA 346 (930)
Q Consensus 304 ~~gs~iivTtr~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 346 (930)
..+--||-||.... +.+.-.-...+++...+.++-.++|+.+.
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 22323343554432 22111235678888777777778886654
No 277
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.40 E-value=0.2 Score=52.13 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=47.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHH--HHHHHHHHHhcCC---CCCCccHHHH-HHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEF--RVAKAIVEALDGH---ESRLGEFQSL-IKHI 269 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~---~~~~~~~~~~-~~~l 269 (930)
...++.|+|.+|+||||++..++.. .+..-..+.++... .+... +-+...++..+.. .....+...+ ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 5689999999999999999999873 33332345555543 23222 1223334443321 1111222222 2334
Q ss_pred HHHhcCceEEEEEeCcc
Q 002362 270 YESVAGMCFLLVLDDVW 286 (930)
Q Consensus 270 ~~~l~~kr~LlVlDdv~ 286 (930)
...+....=++|+|-.-
T Consensus 180 ~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 44444444478888663
No 278
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.32 E-value=0.12 Score=55.06 Aligned_cols=48 Identities=25% Similarity=0.363 Sum_probs=33.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcC----CeEEEEEeCCCccHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKF----DKILWVCVSETFEEFR 243 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~ 243 (930)
.-.++.|+|..|+|||||++.++......... ..++|+.....+....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 45799999999999999999987632101111 2458998776654333
No 279
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.29 E-value=0.0096 Score=57.20 Aligned_cols=108 Identities=13% Similarity=-0.037 Sum_probs=51.4
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCC--CCCCccHHHHHHHHHHHhcC
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGH--ESRLGEFQSLIKHIYESVAG 275 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~l~~~l~~ 275 (930)
.++.|+|..|+||||++..++.....+ . ..++++....+ .+.....+...++.. .....+..+ +.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~-g-~~v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~~~~~~----~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG-K-KKVAVFKPKID--SRYHSTMIVSHSGNGVEAHVIERPEE----MRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT-T-CEEEEEEEC-------CCCEECC----CEECEEESSGGG----GGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-C-CeEEEEeeccc--cccCcccEEecCCCceeeEEECCHHH----HHHHhcC
Confidence 478899999999999996666532211 2 23333332211 000000000001100 000011111 2222334
Q ss_pred ceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCCh
Q 002362 276 MCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKK 316 (930)
Q Consensus 276 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 316 (930)
+.-+|++|.+..-+. .|......+.+. |..|++|.+..
T Consensus 76 ~~dvviIDE~Q~~~~-~~~~~l~~l~~~--~~~Vi~~Gl~~ 113 (184)
T 2orw_A 76 DTRGVFIDEVQFFNP-SLFEVVKDLLDR--GIDVFCAGLDL 113 (184)
T ss_dssp TEEEEEECCGGGSCT-THHHHHHHHHHT--TCEEEEEEESB
T ss_pred CCCEEEEECcccCCH-HHHHHHHHHHHC--CCCEEEEeecc
Confidence 456999999976432 355544434333 67799888743
No 280
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.24 E-value=0.13 Score=51.27 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=31.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHH---h-cCCeEEEEEeCCCccH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVK---R-KFDKILWVCVSETFEE 241 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~ 241 (930)
.-.+++|+|+.|+|||||++.++...... . .-..++|+.....+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 45799999999999999999987521110 1 1345888876654443
No 281
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.20 E-value=0.027 Score=63.02 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=35.1
Q ss_pred ceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhc
Q 002362 171 EICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 171 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.++|+++.++.+...+... .-|.|+|++|+|||+||+.+++
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHH
Confidence 4789999998888887642 3588999999999999999987
No 282
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.17 E-value=0.11 Score=56.41 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=37.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHH----hcCCeEEEEEeCCCccHHHHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVK----RKFDKILWVCVSETFEEFRVAKAIVEALD 253 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 253 (930)
.-.++.|+|.+|+|||||+..++-..... ..-..++|+.....++...+. .+++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcC
Confidence 34699999999999999999765311111 123468899887766655443 3555554
No 283
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.16 E-value=0.02 Score=54.65 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998876
No 284
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.13 E-value=0.022 Score=54.12 Aligned_cols=20 Identities=45% Similarity=0.723 Sum_probs=18.6
Q ss_pred EEEEEEecCCChHHHHHHHH
Q 002362 198 HIISIIGMGGMGKTTLAQLA 217 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v 217 (930)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999988
No 285
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.13 E-value=0.16 Score=53.40 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=37.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHh
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEAL 252 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 252 (930)
-.++.|.|.+|+||||+|..++.... .+=..++|++. ..+...+...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a--~~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSAL--NDDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHH--HTTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 45899999999999999999987432 22245677665 456677777776554
No 286
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.11 E-value=0.027 Score=54.36 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.-.+++|+|+.|+|||||++.+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999976
No 287
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.09 E-value=0.042 Score=56.91 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=28.9
Q ss_pred hHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhc
Q 002362 178 EKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 178 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..++++..++..... .....+|.|.|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~~-~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKKA-VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCCC-CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhccccC-CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444555555443221 34568999999999999999998865
No 288
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.05 E-value=0.48 Score=51.67 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999988876
No 289
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.98 E-value=0.18 Score=51.19 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+++|+|+.|.|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999975
No 290
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.94 E-value=0.21 Score=54.36 Aligned_cols=37 Identities=30% Similarity=0.277 Sum_probs=26.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEe
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCV 235 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 235 (930)
..++.|+|.+|+||||++..++.. ....=..+..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~--l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAA 134 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEeec
Confidence 578999999999999999999873 3333233444444
No 291
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.93 E-value=0.046 Score=57.53 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=31.7
Q ss_pred ecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhch
Q 002362 173 CGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 173 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
++-+.-.+++++.+...-. ......|.|+|+.|+||||+++.++..
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 3344555666666543222 234667999999999999999999873
No 292
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.89 E-value=0.29 Score=51.34 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=38.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHh
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEAL 252 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 252 (930)
.-.++.|.|.+|+||||+|..++.+... .-..++|++.. .+...+...+....
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~--~g~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD--NDDVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT--TTCEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 3468999999999999999998864222 22578887765 45666766666553
No 293
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.89 E-value=0.028 Score=53.70 Aligned_cols=22 Identities=41% Similarity=0.451 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999875
No 294
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.86 E-value=0.025 Score=55.14 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=21.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..+|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999976
No 295
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.86 E-value=0.38 Score=50.51 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=23.1
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhch
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
....+++|+|+.|+||||+++.++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999873
No 296
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.86 E-value=0.026 Score=53.39 Aligned_cols=22 Identities=23% Similarity=0.150 Sum_probs=20.0
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999876
No 297
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.79 E-value=0.045 Score=55.64 Aligned_cols=42 Identities=24% Similarity=0.226 Sum_probs=30.0
Q ss_pred hhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhc
Q 002362 177 DEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 177 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...++++..+...... .....+|.|+|++|+||||+|+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~-~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 13 HALARNLRSLTRGKKS-SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHTTCCC-CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCc-ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445555555543332 34568999999999999999998865
No 298
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.70 E-value=0.038 Score=53.37 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 299
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.66 E-value=0.033 Score=53.28 Aligned_cols=23 Identities=13% Similarity=0.388 Sum_probs=20.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
-++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999876
No 300
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.66 E-value=0.042 Score=59.34 Aligned_cols=49 Identities=27% Similarity=0.302 Sum_probs=35.4
Q ss_pred ceecchhhHHHHHHHhccC-------C--CCCCCCeEEEEEEecCCChHHHHHHHHhc
Q 002362 171 EICGRVDEKNELLSKLLCE-------S--SDSPKGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 171 ~~vGr~~~~~~l~~~L~~~-------~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.++|.+..++.+...+... . .........+.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3689888888888777210 0 00012345789999999999999999987
No 301
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.63 E-value=0.038 Score=53.85 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=22.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHhch
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
...+|+|+|+.|.||||+|+.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999873
No 302
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.56 E-value=0.16 Score=55.63 Aligned_cols=100 Identities=18% Similarity=0.086 Sum_probs=61.5
Q ss_pred HHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCc-cHHHHHHHHHHHhcCC----
Q 002362 181 ELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETF-EEFRVAKAIVEALDGH---- 255 (930)
Q Consensus 181 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~---- 255 (930)
++++.|..-. +-..++|+|..|+|||+|++.+.+.. .+.+-+.++++-+.+.. .+.++..++.+.-...
T Consensus 154 rvID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l 227 (498)
T 1fx0_B 154 KVVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNI 227 (498)
T ss_dssp TTHHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTT
T ss_pred eEeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccc
Confidence 4566665432 33468999999999999999988731 22345788888887765 4556666666531111
Q ss_pred ---C-------CCCc-----cHHHHHHHHHHHhc---CceEEEEEeCcc
Q 002362 256 ---E-------SRLG-----EFQSLIKHIYESVA---GMCFLLVLDDVW 286 (930)
Q Consensus 256 ---~-------~~~~-----~~~~~~~~l~~~l~---~kr~LlVlDdv~ 286 (930)
. .+.. -.....-.+.++++ ++.+|+++||+-
T Consensus 228 ~~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 228 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp CCCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 0 0110 11122333455654 689999999983
No 303
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.47 E-value=0.031 Score=53.64 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999876
No 304
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.45 E-value=0.32 Score=50.36 Aligned_cols=88 Identities=18% Similarity=0.128 Sum_probs=47.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCC-ccHHHHHHHHHHHhcCC---CCCCccHHHHHHHHHHH
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSET-FEEFRVAKAIVEALDGH---ESRLGEFQSLIKHIYES 272 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~l~~~ 272 (930)
..++.++|.+|+||||++..++.. ....=..+.++..... ....+.+....+..+.. .....+..++.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 678999999999999999998873 3333234566655422 22222333344443321 11123344443333444
Q ss_pred hc-CceEEEEEeCcc
Q 002362 273 VA-GMCFLLVLDDVW 286 (930)
Q Consensus 273 l~-~kr~LlVlDdv~ 286 (930)
++ ..-=++|+|-.-
T Consensus 176 ~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHTTCSEEEEECCC
T ss_pred HHhCCCCEEEEeCCC
Confidence 43 222378888753
No 305
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.43 E-value=0.038 Score=57.91 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=29.3
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeC
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVS 236 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 236 (930)
++.+||+|.|-|||||||.|-.+.- -....=..+.-|.+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~--aLA~~GkkVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHH--HHHHCCCeEEEEecC
Confidence 3679999999999999999988766 333333356666665
No 306
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.37 E-value=0.031 Score=52.96 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998876
No 307
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.35 E-value=0.03 Score=53.53 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=19.2
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
|.|.|+|+.|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998865
No 308
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.27 E-value=0.042 Score=53.10 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 309
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.22 E-value=0.063 Score=51.52 Aligned_cols=117 Identities=13% Similarity=0.030 Sum_probs=59.6
Q ss_pred cCCCCccEEEEccc-cccccchhhhHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccc--
Q 002362 549 CGVKRMRSLIIDYS-RYFHLYLNGKILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIR-- 625 (930)
Q Consensus 549 ~~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~-- 625 (930)
..-+.|+.|.+.++ .+.+ .....+...+..-+.|+.|+|++|... +.....+.+.+..-..|++|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd--~ga~~la~aL~~N~~L~~L~L~~n~ig--d~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSK--ERIRSLIEAACNSKHIEKFSLANTAIS--DSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp TTCSSCCEEECTTCCSSCH--HHHHHHHHHHTTCSCCCEEECTTSCCB--HHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred hcCCCccEEECCCCCCCCH--HHHHHHHHHHhhCCCcCEEEccCCCCC--hHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 34456667777653 3221 111223444556667777777755322 0011223334444566777777777766
Q ss_pred ---ccccccccCCcccEEeccCCCC--Cc-----cccccccccCCcceEeecCc
Q 002362 626 ---KLPDTLCELYNLQKLDISCCCK--LK-----ELPQGIGKLINMRHLLNYGT 669 (930)
Q Consensus 626 ---~lp~~i~~L~~L~~L~l~~~~~--~~-----~lp~~i~~L~~L~~L~l~~~ 669 (930)
.+-+.+..-..|++|+|++|.. +. .+...+..-+.|..|++..+
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 3344455555677777765421 11 13333444556666666544
No 310
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.16 E-value=0.045 Score=51.94 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.-.+++|+|+.|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 311
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.15 E-value=0.044 Score=51.83 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=20.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.-.+++|+|+.|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 346899999999999999997553
No 312
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.10 E-value=0.11 Score=49.89 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCChHHHHHHHHhch
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
...+|.|.|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 313
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.07 E-value=0.047 Score=52.58 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.9
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999864
No 314
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.07 E-value=0.069 Score=59.64 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHhch
Q 002362 199 IISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
.+.|.|.+|+||||++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8999999999999999988874
No 315
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.03 E-value=0.044 Score=53.44 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...+++|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 316
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.02 E-value=0.35 Score=52.80 Aligned_cols=100 Identities=18% Similarity=0.113 Sum_probs=60.5
Q ss_pred HHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCcc-HHHHHHHHHHHhcCC----
Q 002362 181 ELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFE-EFRVAKAIVEALDGH---- 255 (930)
Q Consensus 181 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~---- 255 (930)
++++.|..-. +-..++|+|..|+|||+|++.+.+.. .+.+-+.++++-+.+... +.++.+++.+.-...
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~ 215 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDA 215 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSS
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccC
Confidence 5566665432 33579999999999999999988731 123446778888877653 456666666542111
Q ss_pred ---------CCCCccH-----HHHHHHHHHHh---cCceEEEEEeCcc
Q 002362 256 ---------ESRLGEF-----QSLIKHIYESV---AGMCFLLVLDDVW 286 (930)
Q Consensus 256 ---------~~~~~~~-----~~~~~~l~~~l---~~kr~LlVlDdv~ 286 (930)
..+.... ....-.+.+++ +++.+||++||+-
T Consensus 216 ~~rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 216 TSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred CceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 0111111 11222233444 4789999999983
No 317
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.97 E-value=0.33 Score=50.33 Aligned_cols=37 Identities=30% Similarity=0.277 Sum_probs=26.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEe
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCV 235 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 235 (930)
..+++|+|.+|+||||++..++.. ....=..+.++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAA 134 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH--HHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEecC
Confidence 468999999999999999999873 3333234555544
No 318
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.97 E-value=0.058 Score=52.85 Aligned_cols=24 Identities=42% Similarity=0.433 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...+|+|+|+.|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998866
No 319
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.94 E-value=0.054 Score=52.79 Aligned_cols=25 Identities=44% Similarity=0.448 Sum_probs=22.3
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhc
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
....+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999876
No 320
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.90 E-value=0.056 Score=53.13 Aligned_cols=24 Identities=42% Similarity=0.426 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...+++|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 321
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.89 E-value=0.037 Score=53.99 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..+|.|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 322
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.88 E-value=0.049 Score=53.43 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...+++|+|+.|+|||||++.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 346899999999999999999876
No 323
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.86 E-value=0.092 Score=49.07 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..+++.|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999987
No 324
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.82 E-value=0.049 Score=55.27 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.++.|+|+.|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999876
No 325
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.81 E-value=0.039 Score=52.66 Aligned_cols=24 Identities=38% Similarity=0.426 Sum_probs=21.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..++|.|+|++|+||||+|+.+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 346789999999999999998875
No 326
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.81 E-value=0.049 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
-.+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 327
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.78 E-value=0.048 Score=52.58 Aligned_cols=22 Identities=36% Similarity=0.670 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999977
No 328
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.78 E-value=0.059 Score=52.60 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...+|+|.|+.|+||||+|+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999998875
No 329
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.76 E-value=0.057 Score=52.99 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhc
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+.+||.|.|++|+||||.|+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998876
No 330
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.76 E-value=0.97 Score=50.35 Aligned_cols=39 Identities=28% Similarity=0.357 Sum_probs=26.6
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEe
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCV 235 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 235 (930)
...++|.|+|.+|+||||++..++.. ....=..+..|+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~--l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYY--YQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEec
Confidence 35789999999999999999998863 3332123445554
No 331
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.74 E-value=0.047 Score=51.44 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=20.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999876
No 332
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.72 E-value=0.4 Score=50.21 Aligned_cols=38 Identities=29% Similarity=0.325 Sum_probs=27.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEe
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCV 235 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 235 (930)
...+++|+|.+|+||||++..++.. ....=..+.++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~--l~~~g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY--YAELGYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH--HHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeC
Confidence 5689999999999999999999873 3333234555544
No 333
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.70 E-value=0.48 Score=51.87 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=28.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhc-CCeEEEEEeC
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRK-FDKILWVCVS 236 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~vs 236 (930)
..++|.++|.+|+||||++..++.. .... =..+.-|.+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~--l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKF--LREKHKKKVLVVSAD 138 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH--HHHTSCCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHhcCCeEEEEecC
Confidence 5789999999999999999998873 3333 2345555543
No 334
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.67 E-value=0.058 Score=51.68 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=21.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...+|.|+|+.|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998865
No 335
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.67 E-value=0.055 Score=52.30 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 336
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.65 E-value=0.37 Score=52.49 Aligned_cols=38 Identities=32% Similarity=0.295 Sum_probs=27.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEe
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCV 235 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 235 (930)
...+|.++|.+|+||||++..++.. .+..=..+..+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~--l~~~G~kVllv~~ 133 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF--YKKRGYKVGLVAA 133 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH--HHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEec
Confidence 4689999999999999999998873 3333223444444
No 337
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.64 E-value=0.042 Score=52.80 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 338
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.61 E-value=0.055 Score=52.86 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999998864
No 339
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.58 E-value=0.052 Score=52.96 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998876
No 340
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.56 E-value=0.057 Score=52.27 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...+|.|.|+.|+||||+|+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998875
No 341
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.56 E-value=0.046 Score=53.48 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...+|.|+|+.|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 342
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.55 E-value=0.057 Score=51.81 Aligned_cols=97 Identities=13% Similarity=0.142 Sum_probs=61.2
Q ss_pred hHHHHHhhcCCcceEEEcCCcccccCCCCCcccCcccccCCCCCeeeccCCccc-----ccccccccCCcccEEeccCCC
Q 002362 572 KILERLFRESTSLRVLEFGDWARSLQLGPLTRIPRNIERLVHLRYLNLSNQSIR-----KLPDTLCELYNLQKLDISCCC 646 (930)
Q Consensus 572 ~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~ 646 (930)
..+..++.+-+.|+.|+|++|... .......+-+.+..-..|+.|+|++|.|. .+-+.+..-+.|++|+|++|.
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~i-gd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRV-SKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSS-CHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHhcCCCccEEECCCCCCC-CHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 345666777888999999864111 11112334455666678999999999887 344555566788888888887
Q ss_pred CCc----cccccccccCCcceEeecCc
Q 002362 647 KLK----ELPQGIGKLINMRHLLNYGT 669 (930)
Q Consensus 647 ~~~----~lp~~i~~L~~L~~L~l~~~ 669 (930)
.-. .+-..+..-+.|++|+++++
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 322 23334444556777777543
No 343
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.55 E-value=0.38 Score=54.30 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=37.3
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhc-CCeEEEEEeCCCccHHHHHHHHHHHh
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRK-FDKILWVCVSETFEEFRVAKAIVEAL 252 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~~~~~i~~~l 252 (930)
.-.++.|.|.+|+||||||..++.+ .... =..++|++... +...+...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 4468899999999999999998874 3322 23577877644 4567776665544
No 344
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.54 E-value=0.14 Score=50.19 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999977
No 345
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.54 E-value=0.46 Score=52.35 Aligned_cols=42 Identities=24% Similarity=0.428 Sum_probs=30.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCcc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFE 240 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 240 (930)
...+++|+|..|+|||||++.++.- .+. -...+++...+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl--l~~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ--FEQ-QGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH--HHH-TTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH--hhh-cCCeEEEecCcccc
Confidence 4679999999999999999999873 332 24555555444443
No 346
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.52 E-value=0.41 Score=47.73 Aligned_cols=89 Identities=15% Similarity=0.247 Sum_probs=47.8
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHH-hcC-CeEEEEEeCCCccHHHHHHHHHHHhcCCCC---------------C--
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVK-RKF-DKILWVCVSETFEEFRVAKAIVEALDGHES---------------R-- 258 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------------~-- 258 (930)
+.+.|+|..|.||||+.....-+.... ... ...+.+.+........+.+.+...++.... .
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 478999999999998776554432222 222 224444444333334444555444332100 0
Q ss_pred ---CccHHHHHHHHHHHhcCceEEEEEeCccc
Q 002362 259 ---LGEFQSLIKHIYESVAGMCFLLVLDDVWD 287 (930)
Q Consensus 259 ---~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 287 (930)
....+.+...+...+.+-+ +||+|.++.
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~~~-~lVlDEah~ 187 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRGIS-HVIVDEIHE 187 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCC-EEEECCTTS
T ss_pred eEEEECHHHHHHHHHhhhcCCc-EEEEECCcc
Confidence 0234555555555444443 789999976
No 347
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.51 E-value=0.046 Score=51.90 Aligned_cols=21 Identities=43% Similarity=0.567 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
+|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 348
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.51 E-value=0.16 Score=45.36 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=27.5
Q ss_pred ccCcccccCCCCCeeeccCCcccccccc-cccCCcccEEeccCCC
Q 002362 603 RIPRNIERLVHLRYLNLSNQSIRKLPDT-LCELYNLQKLDISCCC 646 (930)
Q Consensus 603 ~lp~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~ 646 (930)
.+|..+. .+|++|+|++|.|+.+|.. +..+++|++|+|++|.
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5665433 3577777777777777654 4566777777777665
No 349
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.43 E-value=0.065 Score=52.44 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=20.0
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 350
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.40 E-value=0.062 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..+++|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999865
No 351
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.38 E-value=0.063 Score=54.75 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=21.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 352
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.38 E-value=0.35 Score=53.70 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=34.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.-.++.|.|.+|+||||||..++...... .=..++|++... +...+...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 34589999999999999999998743222 123677877543 4455555554
No 353
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.36 E-value=0.21 Score=48.24 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999877
No 354
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.33 E-value=0.058 Score=53.68 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998865
No 355
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.31 E-value=0.05 Score=52.89 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999999876
No 356
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.28 E-value=0.057 Score=57.63 Aligned_cols=111 Identities=11% Similarity=0.091 Sum_probs=60.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccH--HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEE--FRVAKAIVEALDGHESRLGEFQSLIKHIYESVA 274 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (930)
-.+++|+|+.|.|||||.+.+... +.......++ .+.+.... ... ..++.+... ... .......+...|.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~-t~ed~~e~~~~~~-~~~v~q~~~-~~~---~~~~~~~La~aL~ 194 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHIL-TIEDPIEFVHESK-KCLVNQREV-HRD---TLGFSEALRSALR 194 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEE-EEESSCCSCCCCS-SSEEEEEEB-TTT---BSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEE-EccCcHHhhhhcc-ccceeeeee-ccc---cCCHHHHHHHHhh
Confidence 359999999999999999998773 3332223332 22221110 000 000000000 001 1223446777888
Q ss_pred CceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChHHHh
Q 002362 275 GMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKSVAS 320 (930)
Q Consensus 275 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 320 (930)
..+=+|++|.+.+ .+.++.+..... .|.-||+||...+.+.
T Consensus 195 ~~PdvillDEp~d--~e~~~~~~~~~~---~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 195 EDPDIILVGEMRD--LETIRLALTAAE---TGHLVFGTLHTTSAAK 235 (356)
T ss_dssp SCCSEEEESCCCS--HHHHHHHHHHHH---TTCEEEEEESCSSHHH
T ss_pred hCcCEEecCCCCC--HHHHHHHHHHHh---cCCEEEEEEccChHHH
Confidence 7788999999964 334444333322 3556899988766553
No 357
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.24 E-value=0.068 Score=54.26 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999998866
No 358
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.24 E-value=0.067 Score=51.29 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..+|.|.|+.|+||||+|+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 359
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.23 E-value=0.086 Score=50.81 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998876
No 360
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.20 E-value=0.14 Score=53.71 Aligned_cols=24 Identities=38% Similarity=0.317 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 557999999999999999998876
No 361
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.19 E-value=0.047 Score=52.35 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
+|.|.|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 362
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.19 E-value=0.13 Score=50.56 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=21.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..+|.|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 363
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.18 E-value=0.096 Score=52.76 Aligned_cols=24 Identities=21% Similarity=0.062 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...+|.|.|++|+||||+|+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998875
No 364
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.18 E-value=0.65 Score=49.09 Aligned_cols=54 Identities=17% Similarity=0.071 Sum_probs=35.5
Q ss_pred HHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCe-EEEEEeCCC
Q 002362 179 KNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDK-ILWVCVSET 238 (930)
Q Consensus 179 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~ 238 (930)
--++++.+..-. .-..++|+|.+|+|||+|++.+.+.... .+=+. ++++-+.+.
T Consensus 162 GiraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~-~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 162 STRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANGIAE-NHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHHHHH-HCTTSEEEEEECSCC
T ss_pred cchhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHHHhh-cCCCeEEEEEEeccC
Confidence 346777776432 3357899999999999999999884221 22232 355666654
No 365
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.16 E-value=0.074 Score=51.80 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...+|.|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999998876
No 366
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.15 E-value=0.065 Score=54.16 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=21.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..+++|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 367
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.08 E-value=0.078 Score=55.51 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...+++|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 567999999999999999999876
No 368
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.03 E-value=1.1 Score=59.96 Aligned_cols=227 Identities=11% Similarity=0.050 Sum_probs=0.0
Q ss_pred EEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCC------------CCCCccHHHHHH
Q 002362 200 ISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGH------------ESRLGEFQSLIK 267 (930)
Q Consensus 200 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~------------~~~~~~~~~~~~ 267 (930)
+.++|++|+|||++|+.+.... .=-..+.+..+...+...+++.+-..+... .
T Consensus 1270 vLL~GPpGtGKT~la~~~l~~~----~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~----------- 1334 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALRNS----SLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD----------- 1334 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC----SSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS-----------
T ss_pred EEEECCCCCCHHHHHHHHHhcC----CCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCC-----------
Q ss_pred HHHHHhcCceEEEEEeCccccCcc------ChhhhhhhhccCC------------CCcEEEEEcCChH-------HHhhh
Q 002362 268 HIYESVAGMCFLLVLDDVWDGNYM------KWEPFFHCLKNGL------------HRSKILVTTRKKS-------VASMM 322 (930)
Q Consensus 268 ~l~~~l~~kr~LlVlDdv~~~~~~------~~~~l~~~l~~~~------------~gs~iivTtr~~~-------v~~~~ 322 (930)
+++.++++||+.-...+ ..+-+...+..++ .+..+|.++.... -.+..
T Consensus 1335 -------gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rll 1407 (2695)
T 4akg_A 1335 -------IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFT 1407 (2695)
T ss_dssp -------SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHH
T ss_pred -------CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhh
Q ss_pred CCcceEeCCCCChHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHcCCchhHHHHHHhhhcCCCCHHHHHHHHhccccc
Q 002362 323 GSTNIISIKELTEEECRLLFNKIAFSDRPIEEREKLEQIGRKIANKCKGLPLAAKIIGSLMRSKETEEEWRRILNSGLWK 402 (930)
Q Consensus 323 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~~ 402 (930)
.....+.+...++++-..+|... .....+....++-....+.... .+-|..+...
T Consensus 1408 Rrf~vi~i~~P~~~~l~~I~~~i----------------l~~~l~~~~~v~~~~~~lv~at-----i~~y~~v~~~---- 1462 (2695)
T 4akg_A 1408 RHAAILYLGYPSGKSLSQIYEIY----------------YKAIFKLVPEFRSYTEPFARAS-----VHLYNECKAR---- 1462 (2695)
T ss_dssp TTEEEEECCCCTTTHHHHHHHHH----------------HHHHTTSSGGGGGGHHHHHHHH-----HHHHHHHHHH----
T ss_pred heeeEEEeCCCCHHHHHHHHHHH----------------HHHHhccCHHHHHHHHHHHHHH-----HHHHHHHHHH----
Q ss_pred chhhhhhHHHHHHHhhhcCChhHHHHHhHhcCC-CCCcccChHHHHHHHHHhC---CcCCCcchhHHHHHHHHHHHHHHc
Q 002362 403 VEEIEKDILSSLLLSYNDLPSKVKKCFSYCAIF-PKDYNIEKDRLITLWMAQG---YLDTEQDEEMESKGEEYFGILASR 478 (930)
Q Consensus 403 ~~~~~~~i~~~l~lsy~~L~~~~k~cf~~~s~f-p~~~~i~~~~Li~~w~a~g---~i~~~~~~~~e~~~~~~~~~L~~~ 478 (930)
..+.-+..|.-=+.++-+.|.-+... |+...-+.+.++++|+-|. |-..--.....+.....+.+.+..
T Consensus 1463 -------~~~~~k~HY~FnlRDLsrv~qGll~~~~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~ 1535 (2695)
T 4akg_A 1463 -------YSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDK 1535 (2695)
T ss_dssp -------SCTTTCTTCCCCHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHH
T ss_pred -------cCCccCCCcccCHHHHHHHHHHHHhcCchhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q ss_pred cC
Q 002362 479 SF 480 (930)
Q Consensus 479 ~l 480 (930)
.|
T Consensus 1536 ~f 1537 (2695)
T 4akg_A 1536 YL 1537 (2695)
T ss_dssp HS
T ss_pred Hh
No 369
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.02 E-value=0.68 Score=51.20 Aligned_cols=54 Identities=11% Similarity=0.046 Sum_probs=37.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHh
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEAL 252 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 252 (930)
.-.++.|.|.+|+||||+|..++..... ..=..++|++.. .+...+...++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~-~~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL-KEGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 3468999999999999999998874222 122357777664 44566666665443
No 370
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.99 E-value=0.073 Score=51.65 Aligned_cols=23 Identities=39% Similarity=0.413 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..+|+|.|+.|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998876
No 371
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.97 E-value=0.055 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.9
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998876
No 372
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.97 E-value=0.076 Score=51.12 Aligned_cols=24 Identities=21% Similarity=0.530 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999998875
No 373
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.96 E-value=0.11 Score=51.72 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHhch
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5688999999999999999998764
No 374
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.89 E-value=0.088 Score=48.85 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.-.+++|+|+.|.|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999976
No 375
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.86 E-value=0.27 Score=47.24 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999977
No 376
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.84 E-value=0.085 Score=50.22 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.-.+|+|.|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999977
No 377
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.82 E-value=0.074 Score=49.96 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 378
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.82 E-value=0.054 Score=51.80 Aligned_cols=23 Identities=39% Similarity=0.310 Sum_probs=16.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998865
No 379
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.80 E-value=0.079 Score=51.89 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
-.+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999876
No 380
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.64 E-value=0.095 Score=52.89 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...+|+|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998876
No 381
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.64 E-value=0.14 Score=53.26 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...+++|+|+.|+|||||++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456999999999999999999987
No 382
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.61 E-value=0.11 Score=49.93 Aligned_cols=37 Identities=16% Similarity=0.075 Sum_probs=26.5
Q ss_pred HHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhch
Q 002362 179 KNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 179 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
+..+..++.. .++...+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~-----iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKG-----TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHT-----CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhc-----CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 4455555532 123456999999999999999988873
No 383
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.60 E-value=0.09 Score=50.63 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...+|+|.|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999998865
No 384
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.55 E-value=0.21 Score=52.72 Aligned_cols=106 Identities=15% Similarity=0.094 Sum_probs=55.0
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhcCce
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESVAGMC 277 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (930)
.+++|+|..|.|||||++.+..- + ..-...+.+.-......... . +.+..-. + ........+...+...+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~-~~~~g~i~i~~~~e~~~~~~-~---~~i~~~~-g--gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--I-PKEERIISIEDTEEIVFKHH-K---NYTQLFF-G--GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--S-CTTSCEEEEESSCCCCCSSC-S---SEEEEEC-B--TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-cCCCcEEEECCeeccccccc-h---hEEEEEe-C--CChhHHHHHHHHhhhCC
Confidence 47999999999999999999873 2 12245555543221110000 0 0000000 0 11223445566677777
Q ss_pred EEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChHH
Q 002362 278 FLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKSV 318 (930)
Q Consensus 278 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 318 (930)
=++++|++... +.++.+ ..+..+ +.-+|+||.....
T Consensus 242 ~ilildE~~~~--e~~~~l-~~~~~g--~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 242 DRIILGELRSS--EAYDFY-NVLCSG--HKGTLTTLHAGSS 277 (330)
T ss_dssp SEEEECCCCST--HHHHHH-HHHHTT--CCCEEEEEECSSH
T ss_pred CEEEEcCCChH--HHHHHH-HHHhcC--CCEEEEEEcccHH
Confidence 78999998652 233322 333332 2226667665443
No 385
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.53 E-value=0.085 Score=53.47 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999875
No 386
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.51 E-value=0.23 Score=56.73 Aligned_cols=104 Identities=13% Similarity=0.140 Sum_probs=53.6
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHh----
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESRLGEFQSLIKHIYESV---- 273 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---- 273 (930)
+++.|.|.+|.||||++..+... .... ...+.+.+........+ .+.++. ....+..+.......+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~--l~~~-g~~Vl~~ApT~~Aa~~L----~e~~~~---~a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADL--AESL-GLEVGLCAPTGKAARRL----GEVTGR---TASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH--HHHT-TCCEEEEESSHHHHHHH----HHHHTS---CEEEHHHHTTEETTEESCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH--HHhc-CCeEEEecCcHHHHHHh----Hhhhcc---cHHHHHHHHcCCcchhhhhh
Confidence 58899999999999999988763 2222 24455555433222222 222221 1111111110000000
Q ss_pred -c-CceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcC
Q 002362 274 -A-GMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTR 314 (930)
Q Consensus 274 -~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr 314 (930)
. .+-=+||+|++...+...+..+...++ .+.++|+.--
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 0 012389999997665445555555554 4567766543
No 387
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.47 E-value=0.11 Score=53.61 Aligned_cols=23 Identities=35% Similarity=0.654 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHh
Q 002362 196 GLHIISIIGMGGMGKTTLAQLAC 218 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~ 218 (930)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 56799999999999999999886
No 388
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.47 E-value=0.098 Score=51.74 Aligned_cols=40 Identities=23% Similarity=0.231 Sum_probs=29.0
Q ss_pred chhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhch
Q 002362 175 RVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 175 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
.++..+.+...+. .....+|.|+|.+|+|||||+..+...
T Consensus 14 ~~~~~~~~~~~~~------~~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 14 NKRLAEKNREALR------ESGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHH------HHTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhc------ccCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3444555555443 125789999999999999999988763
No 389
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.41 E-value=0.072 Score=52.67 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
-.+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 390
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.36 E-value=0.086 Score=52.17 Aligned_cols=23 Identities=30% Similarity=0.237 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 391
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.36 E-value=0.087 Score=52.44 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=20.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
....|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998865
No 392
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.24 E-value=0.071 Score=50.22 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhch
Q 002362 198 HIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
.+++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999873
No 393
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.22 E-value=0.06 Score=53.01 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 394
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.18 E-value=0.53 Score=45.39 Aligned_cols=49 Identities=22% Similarity=0.284 Sum_probs=31.0
Q ss_pred EEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHH
Q 002362 199 IISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIV 249 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (930)
.|+|=|.-|+||||.++.+++ ..+..-..+++..-.......+..+.++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 367889999999999999987 4444444455544433333334444443
No 395
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.14 E-value=0.18 Score=52.35 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=22.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHhch
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
...+++|+|+.|+||||+++.++.-
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999873
No 396
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.10 E-value=0.1 Score=51.21 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHhch
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
...+|+|.|+.|+||||+|+.+...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 397
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.08 E-value=0.28 Score=43.63 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=43.7
Q ss_pred CeeeccCCccc--ccccccccCCcccEEeccCCCCCcccccc-ccccCCcceEeecCcc
Q 002362 615 RYLNLSNQSIR--KLPDTLCELYNLQKLDISCCCKLKELPQG-IGKLINMRHLLNYGTI 670 (930)
Q Consensus 615 r~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~ 670 (930)
..++.+++.++ .+|..+ -.+|++|+|++|. +..+|.. |..+++|+.|+|.+|+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 47888888888 888764 3579999999998 7778765 5889999999999884
No 398
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.01 E-value=0.28 Score=63.26 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=55.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHES-----RLGEFQSLIKHIY 270 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 270 (930)
..+++.|+|++|+|||+||.++... ...+=..++|+.+.+.++... ++.++.+-. .....++....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 5679999999999999999999873 333334688888887766655 344442110 1122344555555
Q ss_pred HHh-cCceEEEEEeCcc
Q 002362 271 ESV-AGMCFLLVLDDVW 286 (930)
Q Consensus 271 ~~l-~~kr~LlVlDdv~ 286 (930)
+.. +.+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 443 3566799999994
No 399
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.96 E-value=0.12 Score=50.74 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHhch
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
...+|.|.|+.|+||||+|+.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999773
No 400
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.95 E-value=0.089 Score=50.50 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.6
Q ss_pred EEEEEecCCChHHHHHHHHhchH
Q 002362 199 IISIIGMGGMGKTTLAQLACNHE 221 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~ 221 (930)
+++|+|..|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999998753
No 401
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.91 E-value=0.11 Score=51.30 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.-.+++|+|+.|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456999999999999999999876
No 402
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.85 E-value=0.094 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.201 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999876
No 403
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.81 E-value=0.2 Score=54.37 Aligned_cols=99 Identities=13% Similarity=0.141 Sum_probs=56.5
Q ss_pred HHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCC----eEEEEEeCCCc-cHHHHHHHHHHHh--c
Q 002362 181 ELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFD----KILWVCVSETF-EEFRVAKAIVEAL--D 253 (930)
Q Consensus 181 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~-~~~~~~~~i~~~l--~ 253 (930)
+.++.|..-. +-..++|+|..|+|||+|+.++.+. ...+-+ .++++-+.+.. .+.++.+++.+.= .
T Consensus 140 raID~l~pig-----rGQr~~Ifgg~G~GKt~L~~~Ia~~--~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~ 212 (465)
T 3vr4_D 140 SAIDHLNTLV-----RGQKLPVFSGSGLPHKELAAQIARQ--ATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAID 212 (465)
T ss_dssp HHHHTTSCCB-----TTCBCCEEECTTSCHHHHHHHHHHH--CBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGG
T ss_pred eEEecccccc-----cCCEEEEeCCCCcChHHHHHHHHHH--HHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCcc
Confidence 4455555332 2234789999999999999988873 222224 56777776643 4455566554431 1
Q ss_pred C-----CCCCCccHH-----HHHHHHHHHh---cCceEEEEEeCcc
Q 002362 254 G-----HESRLGEFQ-----SLIKHIYESV---AGMCFLLVLDDVW 286 (930)
Q Consensus 254 ~-----~~~~~~~~~-----~~~~~l~~~l---~~kr~LlVlDdv~ 286 (930)
. ...+..... .....+.+++ +++.+|+++||+-
T Consensus 213 rtvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 213 RSVMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp GEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 0 011111111 1223345555 3789999999993
No 404
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.81 E-value=0.21 Score=50.20 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=29.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCC
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSE 237 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 237 (930)
-.++.|.|.+|+||||||..++.. ....=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 458999999999999999888663 222334678877654
No 405
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.81 E-value=0.11 Score=51.27 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.9
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998865
No 406
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.73 E-value=0.16 Score=48.71 Aligned_cols=25 Identities=32% Similarity=0.254 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHhch
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
....|.|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999988763
No 407
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.70 E-value=0.15 Score=51.95 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=23.3
Q ss_pred CCCeEEEEEEecCCChHHHHHHHHhch
Q 002362 194 PKGLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 194 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
.....++.+.|.||+||||++..+...
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 346789999999999999999999763
No 408
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.65 E-value=0.29 Score=51.15 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=30.3
Q ss_pred CCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCC
Q 002362 194 PKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSET 238 (930)
Q Consensus 194 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 238 (930)
....++|+|+|-||+||||+|..++.- ....=..++-|.....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~~ 80 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPK 80 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCCC
Confidence 346789999999999999999988873 3333235666776543
No 409
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.65 E-value=0.13 Score=50.72 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.4
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998853
No 410
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.61 E-value=0.1 Score=51.44 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.9
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998876
No 411
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.60 E-value=0.23 Score=56.47 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHhch
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
.-.+++|+|..|+|||||++.++..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 412
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.60 E-value=0.11 Score=51.07 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=18.7
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998865
No 413
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.58 E-value=0.12 Score=51.77 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=21.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
. .+++|+|+.|.|||||.+.++.
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHT
T ss_pred C-EEEEEECCCCCCHHHHHHHHhC
Confidence 5 7899999999999999999876
No 414
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.58 E-value=0.21 Score=54.63 Aligned_cols=50 Identities=26% Similarity=0.328 Sum_probs=35.3
Q ss_pred CceecchhhHHHHHHHhccC-------CC-CCCCCeEEEEEEecCCChHHHHHHHHhc
Q 002362 170 EEICGRVDEKNELLSKLLCE-------SS-DSPKGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~-------~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..++|.++.++.+...+... .. ......+-+.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 35789888888887666321 00 0011345689999999999999999987
No 415
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.54 E-value=0.13 Score=51.01 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999876
No 416
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.54 E-value=0.091 Score=52.93 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 417
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.50 E-value=0.12 Score=50.33 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+|+|.|+.|+||||+++.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998876
No 418
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.46 E-value=0.13 Score=51.49 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999998875
No 419
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.44 E-value=0.42 Score=51.11 Aligned_cols=37 Identities=32% Similarity=0.458 Sum_probs=27.7
Q ss_pred HHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhc
Q 002362 179 KNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 179 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..++.+.+.... ....+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHH
Confidence 445555554322 3578999999999999999998876
No 420
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.44 E-value=0.38 Score=52.78 Aligned_cols=97 Identities=16% Similarity=0.074 Sum_probs=55.8
Q ss_pred HHHHHhccCCCCCCCCeEEEEEEecCCChHHHHH-HHHhchHHHHhcCCe-EEEEEeCCCcc-HHHHHHHHHHHhcC---
Q 002362 181 ELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLA-QLACNHEEVKRKFDK-ILWVCVSETFE-EFRVAKAIVEALDG--- 254 (930)
Q Consensus 181 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~i~~~l~~--- 254 (930)
+.++.|..-. +-..++|+|..|+|||+|| ..+.+.. .-+. .+++-+.+... +.++.+.+.+.=..
T Consensus 164 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rt 234 (515)
T 2r9v_A 164 KAIDSMIPIG-----RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYT 234 (515)
T ss_dssp HHHHHHSCEE-----TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGE
T ss_pred cccccccccc-----cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCccee
Confidence 4556665322 2346899999999999996 5777632 3453 57777777543 44555555542110
Q ss_pred ----CCCCCccHH-----HHHHHHHHHh--cCceEEEEEeCcc
Q 002362 255 ----HESRLGEFQ-----SLIKHIYESV--AGMCFLLVLDDVW 286 (930)
Q Consensus 255 ----~~~~~~~~~-----~~~~~l~~~l--~~kr~LlVlDdv~ 286 (930)
...+..... .....+.+++ +++.+||++||+-
T Consensus 235 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 235 TVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 011111111 1122344444 5899999999993
No 421
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.36 E-value=0.23 Score=52.78 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=22.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHhch
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
...+++|+|+.|+||||+++.++.-
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4679999999999999999999873
No 422
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.35 E-value=0.15 Score=53.20 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..++|.|+|+.|+||||||..++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998876
No 423
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.34 E-value=0.35 Score=53.10 Aligned_cols=97 Identities=19% Similarity=0.102 Sum_probs=55.7
Q ss_pred HHHHHhccCCCCCCCCeEEEEEEecCCChHHHHH-HHHhchHHHHhcCCe-EEEEEeCCCcc-HHHHHHHHHHHhcCC--
Q 002362 181 ELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLA-QLACNHEEVKRKFDK-ILWVCVSETFE-EFRVAKAIVEALDGH-- 255 (930)
Q Consensus 181 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~i~~~l~~~-- 255 (930)
+.++.|..-. +-..++|+|..|+|||+|| ..+.+.. +-+. .+++-+.+... +.++.+.+.+.-...
T Consensus 151 raID~l~Pig-----rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~t 221 (502)
T 2qe7_A 151 KAIDSMIPIG-----RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221 (502)
T ss_dssp HHHHHSSCCB-----TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTE
T ss_pred eecccccccc-----cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCccee
Confidence 4566665432 2346899999999999995 5676631 3453 47777777543 445555555421111
Q ss_pred -----CCCCccHHH-----HHHHHHHHh--cCceEEEEEeCcc
Q 002362 256 -----ESRLGEFQS-----LIKHIYESV--AGMCFLLVLDDVW 286 (930)
Q Consensus 256 -----~~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv~ 286 (930)
..+...... ....+.+++ +++.+||++||+-
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 111111111 122344444 5899999999993
No 424
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.33 E-value=0.13 Score=48.55 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHhch
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
...++.|+|..|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999873
No 425
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.30 E-value=0.13 Score=53.89 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+|+|.|+.|+||||||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999998876
No 426
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=90.23 E-value=1.1 Score=48.30 Aligned_cols=45 Identities=27% Similarity=0.299 Sum_probs=31.7
Q ss_pred ceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhc
Q 002362 171 EICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 171 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.++|....++++.+.+..-.. .... |.|.|..|+|||++|+.+..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~---~~~~-vli~Ge~GtGK~~lAr~ih~ 182 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC---AECP-VLITGESGVGKEVVARLIHK 182 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT---CCSC-EEEECSTTSSHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcC---CCCC-eEEecCCCcCHHHHHHHHHH
Confidence 356666667777666544332 1333 48999999999999998876
No 427
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.14 E-value=0.12 Score=50.55 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHhch
Q 002362 198 HIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
.+++|+|+.|.|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999864
No 428
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.03 E-value=0.29 Score=49.70 Aligned_cols=110 Identities=12% Similarity=0.108 Sum_probs=56.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCC-CccHHHHHHHHHH--HhcCCCCCCccHHHHHHHHHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSE-TFEEFRVAKAIVE--ALDGHESRLGEFQSLIKHIYES 272 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~~ 272 (930)
.-.+++|+|+.|+|||||++.+..- +...+...+++.-.. .+-.... ..+.. .++. +. ..+...+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl---~~---~~l~~~la~a 94 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE---DT---KSFADALRAA 94 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TB---SCHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC---CH---HHHHHHHHHH
Confidence 3468999999999999999998873 333334444433211 0000000 00000 0000 01 1234455566
Q ss_pred hcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcCChHHH
Q 002362 273 VAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTRKKSVA 319 (930)
Q Consensus 273 l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 319 (930)
+...+=++++|...+ .+....+.... ..|.-|++||....+.
T Consensus 95 L~~~p~illlDEp~D--~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 95 LREDPDVIFVGEMRD--LETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHHCCSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred HhhCCCEEEeCCCCC--HHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 654556888999852 22222222222 2356688888876543
No 429
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.97 E-value=0.14 Score=49.99 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999876
No 430
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.95 E-value=0.15 Score=50.53 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998875
No 431
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.94 E-value=0.1 Score=52.07 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=15.9
Q ss_pred EEEEEEecCCChHHHHHHHHh-c
Q 002362 198 HIISIIGMGGMGKTTLAQLAC-N 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~-~ 219 (930)
.+++|+|+.|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999987 5
No 432
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.90 E-value=0.17 Score=50.39 Aligned_cols=25 Identities=28% Similarity=0.154 Sum_probs=22.3
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhc
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..-.+|+|.|..|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3557999999999999999999877
No 433
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.89 E-value=0.15 Score=49.73 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=18.9
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
+|.|.|++|+||||.|+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998876
No 434
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.89 E-value=0.15 Score=52.22 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+++|+|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999865
No 435
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.84 E-value=0.29 Score=50.32 Aligned_cols=41 Identities=15% Similarity=0.257 Sum_probs=29.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhc----------CCeEEEEEeCCCc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRK----------FDKILWVCVSETF 239 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------F~~~~wv~vs~~~ 239 (930)
-.++.|+|.+|+|||||+..++.. +... -..++|+++.+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~--~~~g~~~~g~~~~~~~~v~~~~~e~~~ 80 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQ--IAGGPDLLEVGELPTGPVIYLPAEDPP 80 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHTCCCTTCCCCCCCCCEEEEESSSCH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH--HhcCCCcCCCccCCCccEEEEECCCCH
Confidence 358999999999999999998863 3221 2346677766543
No 436
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.79 E-value=0.16 Score=50.04 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=19.0
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998876
No 437
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.73 E-value=0.16 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..+|.|+|+.|+||||||+.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998876
No 438
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.73 E-value=0.37 Score=47.80 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCChHHHHHHHHhch
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
.-.+|.|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 439
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=89.72 E-value=0.18 Score=54.76 Aligned_cols=101 Identities=11% Similarity=0.131 Sum_probs=55.6
Q ss_pred HHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHH--------hcCC-eEEEEEeCCCc-cHHHHHHHHHH
Q 002362 181 ELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVK--------RKFD-KILWVCVSETF-EEFRVAKAIVE 250 (930)
Q Consensus 181 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~vs~~~-~~~~~~~~i~~ 250 (930)
+.++.|..-. +-..++|+|..|+|||+|+..+.+..... ++=+ .++++-+.+.. .+.++..++.+
T Consensus 136 raID~l~pig-----rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~ 210 (464)
T 3gqb_B 136 STIDVMNTLV-----RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER 210 (464)
T ss_dssp HHHHTTSCCB-----TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred eeeecccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh
Confidence 4455555332 22457899999999999999888742210 1111 56677676544 34455555443
Q ss_pred H--hcC-----CCCCCccHH-----HHHHHHHHHh---cCceEEEEEeCcc
Q 002362 251 A--LDG-----HESRLGEFQ-----SLIKHIYESV---AGMCFLLVLDDVW 286 (930)
Q Consensus 251 ~--l~~-----~~~~~~~~~-----~~~~~l~~~l---~~kr~LlVlDdv~ 286 (930)
. +.. ...+..... ...-.+.+++ +++.+|+++||+-
T Consensus 211 ~g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 211 TGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp TSGGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred cccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 2 100 011111111 2223345555 3789999999993
No 440
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.69 E-value=1.4 Score=48.46 Aligned_cols=52 Identities=15% Similarity=0.120 Sum_probs=35.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEA 251 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 251 (930)
.-.++.|.|.+|+||||+|..++.+... .=..++|++.. .+...+...++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~--~g~~vl~fSlE--ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSD--NDDVVNLHSLE--MGKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHH--TTCEEEEECSS--SCTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHH--cCCEEEEEECC--CCHHHHHHHHHHH
Confidence 3468999999999999999999875322 22356666554 4455555555544
No 441
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.68 E-value=0.16 Score=51.74 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
-.+++|+|+.|.|||||.+.++.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999876
No 442
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.66 E-value=0.15 Score=50.51 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=19.2
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 443
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.60 E-value=0.15 Score=59.09 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=35.2
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhc
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..++|.+..++.+...+... ..+.|+|+.|+||||||+.++.
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhc
Confidence 46899998888888777531 4789999999999999999987
No 444
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.55 E-value=0.65 Score=60.00 Aligned_cols=85 Identities=16% Similarity=0.141 Sum_probs=56.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHES-----RLGEFQSLIKHIY 270 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 270 (930)
.-+++.|+|.+|+||||||.+++.. ....=..++|++....++... ++.++.... +..+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~--~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 4569999999999999999999874 333334688988877766432 445543211 2235566666665
Q ss_pred HHh-cCceEEEEEeCccc
Q 002362 271 ESV-AGMCFLLVLDDVWD 287 (930)
Q Consensus 271 ~~l-~~kr~LlVlDdv~~ 287 (930)
... +.+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 443 34456999999854
No 445
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.53 E-value=0.16 Score=50.69 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=21.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
....|.|.|+.|+||||+|+.+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999876
No 446
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=89.52 E-value=0.31 Score=53.51 Aligned_cols=85 Identities=18% Similarity=0.086 Sum_probs=48.7
Q ss_pred EEEEEEecCCChHHHHH-HHHhchHHHHhcCC-eEEEEEeCCCcc-HHHHHHHHHHHhcC--------CCCC--C--ccH
Q 002362 198 HIISIIGMGGMGKTTLA-QLACNHEEVKRKFD-KILWVCVSETFE-EFRVAKAIVEALDG--------HESR--L--GEF 262 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~--------~~~~--~--~~~ 262 (930)
..++|+|..|+|||+|| ..+.+.. .-+ ..+++-+.+... +.++.+.+...=.. ...+ . .-.
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 46899999999999995 5777632 244 357777777543 34444444332100 0011 1 111
Q ss_pred HHHHHHHHHHh--cCceEEEEEeCcc
Q 002362 263 QSLIKHIYESV--AGMCFLLVLDDVW 286 (930)
Q Consensus 263 ~~~~~~l~~~l--~~kr~LlVlDdv~ 286 (930)
......+.+++ +++.+||++||+-
T Consensus 240 ~~~a~tiAEyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 240 PYTGAALAEYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 12222333443 5899999999983
No 447
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=89.51 E-value=0.94 Score=50.37 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=40.0
Q ss_pred HHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCc-cHHHHHHH
Q 002362 181 ELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETF-EEFRVAKA 247 (930)
Q Consensus 181 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~ 247 (930)
++++.|..-. +-..++|.|..|+|||+|++.+.+. .+-+.++++-+.+.. .+.+++.+
T Consensus 221 rvID~l~Pig-----rGqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPVT-----KGGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCcc-----CCCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 4566665432 3357899999999999999998763 234678888887653 34444444
No 448
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.50 E-value=0.17 Score=50.80 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+++|+|+.|.|||||.+.++-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999876
No 449
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.50 E-value=0.16 Score=51.69 Aligned_cols=22 Identities=41% Similarity=0.703 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+++|+|+.|.|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999976
No 450
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.46 E-value=0.56 Score=45.80 Aligned_cols=105 Identities=14% Similarity=0.182 Sum_probs=54.1
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCC----------CCccHHHHHH
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHES----------RLGEFQSLIK 267 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----------~~~~~~~~~~ 267 (930)
-.|.+.|.||+||||+|..+.... ....++ +..+.+...-.... ...+..+..... ...+++..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l-~~~G~~-V~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~l~~~-- 80 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ-LRQGVR-VMAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMDLDAL-- 80 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH-HHTTCC-EEEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECCHHHH--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH-HHCCCC-EEEEEeCCCCChhH--HHHhcCccccCcceeecCCcccccccHHHH--
Confidence 458889999999999998888732 222333 44555544322221 112222211100 11223322
Q ss_pred HHHHHhcCceEEEEEeCccccC------ccChhhhhhhhccCCCCcEEEEEcCCh
Q 002362 268 HIYESVAGMCFLLVLDDVWDGN------YMKWEPFFHCLKNGLHRSKILVTTRKK 316 (930)
Q Consensus 268 ~l~~~l~~kr~LlVlDdv~~~~------~~~~~~l~~~l~~~~~gs~iivTtr~~ 316 (930)
+..+.=++|+|++-..+ ...|..+...++. |-.|+.|+..+
T Consensus 81 -----L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s---gidVitT~Nlq 127 (228)
T 2r8r_A 81 -----LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAA---GIDVYTTVNVQ 127 (228)
T ss_dssp -----HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT---TCEEEEEEEGG
T ss_pred -----HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcC---CCCEEEEcccc
Confidence 22234499999874321 2245555554433 45688888755
No 451
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.45 E-value=0.14 Score=50.11 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+++|+|+.|.|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999876
No 452
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.45 E-value=0.21 Score=46.57 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhch
Q 002362 198 HIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998763
No 453
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.43 E-value=0.18 Score=51.95 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.++|.|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999998875
No 454
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.42 E-value=0.17 Score=51.42 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
-.+++|+|+.|.|||||.+.++.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 35899999999999999999876
No 455
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.41 E-value=0.18 Score=48.58 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHhch
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
....|+|+|..|+|||||.+.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3567899999999999999988763
No 456
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.38 E-value=0.17 Score=51.33 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+++|+|+.|.|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999876
No 457
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=89.36 E-value=0.57 Score=51.53 Aligned_cols=101 Identities=18% Similarity=0.122 Sum_probs=56.3
Q ss_pred HHHHHhccCCCCCCCCeEEEEEEecCCChHHHHH-HHHhchHHHH----hcCC-eEEEEEeCCCcc-HHHHHHHHHHHhc
Q 002362 181 ELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLA-QLACNHEEVK----RKFD-KILWVCVSETFE-EFRVAKAIVEALD 253 (930)
Q Consensus 181 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~----~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~ 253 (930)
+.++.|..-. +-..++|+|..|+|||+|| ..+.+....- .+-+ .++++-+.+... +.++.+.+...=.
T Consensus 151 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~ 225 (510)
T 2ck3_A 151 KAVDSLVPIG-----RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 225 (510)
T ss_dssp HHHHHHSCCB-----TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred eeeccccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCC
Confidence 4566665432 2346899999999999995 5666632210 1244 477787877553 4455555554211
Q ss_pred C-------CCCCCccHH-----HHHHHHHHHh--cCceEEEEEeCcc
Q 002362 254 G-------HESRLGEFQ-----SLIKHIYESV--AGMCFLLVLDDVW 286 (930)
Q Consensus 254 ~-------~~~~~~~~~-----~~~~~l~~~l--~~kr~LlVlDdv~ 286 (930)
. ...+..... .....+.+++ +++.+||++||+-
T Consensus 226 m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 226 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp GGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 0 011111111 1122334444 5899999999993
No 458
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.31 E-value=1.1 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
-.+++|+|+.|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999865
No 459
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.26 E-value=0.18 Score=50.94 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+++|+|+.|.|||||.+.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999876
No 460
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.24 E-value=0.18 Score=50.80 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+++|+|..|.|||||.+.++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 461
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.20 E-value=0.17 Score=48.24 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhch
Q 002362 199 IISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999874
No 462
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.19 E-value=0.28 Score=53.75 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCChHHHHHHHHhch
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
..++|.|+|.+|+||||+|..++..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998874
No 463
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.14 E-value=0.18 Score=50.96 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+++|+|+.|.|||||.+.++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 464
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=89.12 E-value=0.84 Score=45.51 Aligned_cols=101 Identities=20% Similarity=0.153 Sum_probs=52.9
Q ss_pred EEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcC---C--------CCC-----CccHH
Q 002362 200 ISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDG---H--------ESR-----LGEFQ 263 (930)
Q Consensus 200 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~---~--------~~~-----~~~~~ 263 (930)
+.|+|..|.|||.+|..+... . -..++++ +... .+..++.+.+.. . ... ....+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~--~---~~~~liv-~P~~----~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINE--L---STPTLIV-VPTL----ALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHH--S---CSCEEEE-ESSH----HHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH--c---CCCEEEE-eCCH----HHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 788999999999999887652 1 1223333 3322 233333333221 1 000 11223
Q ss_pred HHHHHHHHHhcCceEEEEEeCccccCccChhhhhhhhccCCCCcEEEEEcC
Q 002362 264 SLIKHIYESVAGMCFLLVLDDVWDGNYMKWEPFFHCLKNGLHRSKILVTTR 314 (930)
Q Consensus 264 ~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr 314 (930)
.+..... .+.++--+||+|++.......+..+...++ ...++.+|..
T Consensus 181 ~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSAT 227 (237)
T 2fz4_A 181 SAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTAT 227 (237)
T ss_dssp HHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEES
T ss_pred HHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEecC
Confidence 3333332 333444599999998765556666655543 2334555543
No 465
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.08 E-value=0.19 Score=55.04 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.4
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhc
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
....+|.|+|++|+||||+|+.+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999876
No 466
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.07 E-value=0.22 Score=51.25 Aligned_cols=24 Identities=29% Similarity=0.194 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..++|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999998875
No 467
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.05 E-value=0.19 Score=51.33 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+++|+|+.|.|||||.+.++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999876
No 468
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.02 E-value=0.42 Score=48.82 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=27.6
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCC
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSE 237 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 237 (930)
++|+|.|.||+||||+|..++. .....=..++-|....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~--~la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS--GLHAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH--HHHTTTCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHH--HHHHCCCcEEEEcCCC
Confidence 5788899999999999998887 3333323566676643
No 469
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.90 E-value=0.19 Score=50.51 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+++|+|+.|.|||||.+.++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999876
No 470
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.88 E-value=0.19 Score=51.32 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
-.+++|+|..|.|||||.+.++.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999875
No 471
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.88 E-value=0.19 Score=50.96 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+++|+|+.|.|||||.+.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 472
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.86 E-value=0.19 Score=52.39 Aligned_cols=22 Identities=41% Similarity=0.451 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 473
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.72 E-value=0.77 Score=44.85 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHhch
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
-..|.|-|+.|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 474
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.71 E-value=0.2 Score=50.55 Aligned_cols=22 Identities=36% Similarity=0.683 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+++|+|+.|.|||||.+.++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999876
No 475
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.65 E-value=0.2 Score=51.01 Aligned_cols=22 Identities=32% Similarity=0.515 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+++|+|..|.|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999875
No 476
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.58 E-value=0.21 Score=51.28 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.+++|+|+.|.|||||.+.++.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999876
No 477
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=88.55 E-value=0.49 Score=48.94 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=28.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCC
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSE 237 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 237 (930)
.++|+|.|.||+||||+|..++.. ....=..++-|....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~--La~~G~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAA--LAEMGKKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHH--HHHCCCeEEEEecCC
Confidence 367888999999999999988873 333323566666643
No 478
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=88.51 E-value=0.73 Score=51.03 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=40.7
Q ss_pred HHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCcc-HHHHHHHH
Q 002362 181 ELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFE-EFRVAKAI 248 (930)
Q Consensus 181 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i 248 (930)
++++.|..-. +-..++|+|..|+|||+|++.+.+. .+-+.++++-+.+... +.++..++
T Consensus 216 rvID~l~Pig-----kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-----KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-----TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-----cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 4566665432 3357999999999999999988652 2346788888887654 44555544
No 479
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.48 E-value=0.21 Score=51.65 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
.-.+++|+|+.|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 346899999999999999999876
No 480
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.47 E-value=0.22 Score=49.87 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.9
Q ss_pred CCeEEEEEEecCCChHHHHHHHHhc
Q 002362 195 KGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3566899999999999999998875
No 481
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=88.45 E-value=0.83 Score=52.70 Aligned_cols=47 Identities=19% Similarity=0.086 Sum_probs=30.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhchHHHHh---cCCeEEEEEeCCCccHHHHH
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNHEEVKR---KFDKILWVCVSETFEEFRVA 245 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~vs~~~~~~~~~ 245 (930)
-+++.|.|.+|.||||++..+... ... .-...+.+.+....-...+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~--l~~~~~~~~~~vll~APTg~AA~~L~ 213 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAA--LIQMADGERCRIRLAAPTGKAAARLT 213 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHH--HHHTCSSCCCCEEEEBSSHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHH--HHHhhhcCCCeEEEEeCChhHHHHHH
Confidence 358999999999999998877652 221 12346777766544333333
No 482
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.42 E-value=0.24 Score=45.73 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHhch
Q 002362 198 HIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
.-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999988764
No 483
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.26 E-value=0.13 Score=53.26 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=18.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
+..+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 484
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=88.25 E-value=0.18 Score=58.07 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 002362 199 IISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (930)
-|.++|.+|+|||+||+.+++
T Consensus 329 ~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSST
T ss_pred ceEEECCCchHHHHHHHHHHH
Confidence 589999999999999999987
No 485
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=88.25 E-value=0.24 Score=54.03 Aligned_cols=100 Identities=12% Similarity=0.074 Sum_probs=56.3
Q ss_pred HHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhc--CCeEEEEEeCCCc-cHHHHHHHHHHHhcCC--
Q 002362 181 ELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRK--FDKILWVCVSETF-EEFRVAKAIVEALDGH-- 255 (930)
Q Consensus 181 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-- 255 (930)
++++.|..-. +-..++|+|.+|+|||+|+..++++....+. =+.++++-+.+.. .+.++..++...=...
T Consensus 141 r~ID~l~pig-----rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rt 215 (469)
T 2c61_A 141 STIDGTNTLV-----RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERA 215 (469)
T ss_dssp HHHHTTSCCB-----TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGE
T ss_pred Eeeeeeeccc-----cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccce
Confidence 4566665432 2345788899999999999988874222111 1356666676544 4455666665431110
Q ss_pred -----CCCCccH-----HHHHHHHHHHh---cCceEEEEEeCc
Q 002362 256 -----ESRLGEF-----QSLIKHIYESV---AGMCFLLVLDDV 285 (930)
Q Consensus 256 -----~~~~~~~-----~~~~~~l~~~l---~~kr~LlVlDdv 285 (930)
..+.... ....-.+.+++ +++.+|+++||+
T Consensus 216 vvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 216 VVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1111111 11222344454 479999999998
No 486
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.23 E-value=0.25 Score=47.09 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 002362 198 HIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
+.|.|.|..|+||||||..+..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998876
No 487
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.10 E-value=0.88 Score=44.66 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=22.5
Q ss_pred CeEEEEEEecCCChHHHHHHHHhch
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
....|.|.|..|+||||+++.+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999874
No 488
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.09 E-value=0.23 Score=48.10 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhch
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998763
No 489
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.09 E-value=0.79 Score=58.43 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=0.0
Q ss_pred EEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCCC-----CccHHHHHHHHHHH
Q 002362 198 HIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHESR-----LGEFQSLIKHIYES 272 (930)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~~ 272 (930)
+++.|+|.+|+||||||.+++. .....=..++|++....++... ++.++..... ..+.+++...+...
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~l 456 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHH
Q ss_pred h-cCceEEEEEeCc
Q 002362 273 V-AGMCFLLVLDDV 285 (930)
Q Consensus 273 l-~~kr~LlVlDdv 285 (930)
. +.+.-+||+|-+
T Consensus 457 v~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 457 ARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHTCCSEEEESCS
T ss_pred HHhcCCCEEEECCH
No 490
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.08 E-value=0.29 Score=46.66 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCChHHHHHHHHhch
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999998763
No 491
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=87.89 E-value=1.3 Score=48.48 Aligned_cols=97 Identities=20% Similarity=0.123 Sum_probs=55.4
Q ss_pred HHHHHhccCCCCCCCCeEEEEEEecCCChHHHHH-HHHhchHHHHhcCC-eEEEEEeCCCcc-HHHHHHHHHHHhcCC--
Q 002362 181 ELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLA-QLACNHEEVKRKFD-KILWVCVSETFE-EFRVAKAIVEALDGH-- 255 (930)
Q Consensus 181 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~-- 255 (930)
+.++.|..-. +-..++|+|..|+|||+|| ..+.|. .+-+ .++++-+.+... +.++.+++.+.-...
T Consensus 151 kaID~l~Pig-----rGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~t 221 (513)
T 3oaa_A 151 KAVDSMIPIG-----RGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANT 221 (513)
T ss_dssp HHHHHHSCCB-----TTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTE
T ss_pred eeeccccccc-----cCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccce
Confidence 3455555322 2346899999999999996 566662 2334 367888887643 455555554431111
Q ss_pred -----CCCCccHH-----HHHHHHHHHh--cCceEEEEEeCcc
Q 002362 256 -----ESRLGEFQ-----SLIKHIYESV--AGMCFLLVLDDVW 286 (930)
Q Consensus 256 -----~~~~~~~~-----~~~~~l~~~l--~~kr~LlVlDdv~ 286 (930)
..+..... .....+.+++ +++.+||++||+-
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 222 IVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred EEEEECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 11111111 1122233444 5899999999993
No 492
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.86 E-value=0.22 Score=51.76 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhc
Q 002362 197 LHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
-.+++|+|+.|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 35899999999999999999865
No 493
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.78 E-value=0.27 Score=50.25 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHhch
Q 002362 199 IISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
.++|+|..|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999873
No 494
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=87.67 E-value=0.62 Score=45.14 Aligned_cols=44 Identities=25% Similarity=0.212 Sum_probs=30.5
Q ss_pred EEEEEE-ecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHH
Q 002362 198 HIISII-GMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFR 243 (930)
Q Consensus 198 ~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 243 (930)
++|+|+ +.||+||||+|..++.. ....=..++-|......+...
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~--la~~g~~vlliD~D~~~~~~~ 46 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATA--LSRSGYNIAVVDTDPQMSLTN 46 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCTTCHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHH--HHHCCCeEEEEECCCCCCHHH
Confidence 577787 68999999999998873 333334577777765544433
No 495
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.67 E-value=0.26 Score=52.87 Aligned_cols=24 Identities=29% Similarity=0.115 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCChHHHHHHHHhc
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
...+++|+|+.|.|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456999999999999999999986
No 496
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=87.66 E-value=0.29 Score=52.62 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=31.5
Q ss_pred CceecchhhHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhc
Q 002362 170 EEICGRVDEKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACN 219 (930)
Q Consensus 170 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (930)
..++|....+.++...+..... ....|.|.|.+|.||+++|+.+..
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----~~~~vli~GesGtGKe~lAr~ih~ 174 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----SKAPVLITGESGTGKEIVARLIHR 174 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----SCSCEEEECCTTSSHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----cchhheEEeCCCchHHHHHHHHHH
Confidence 3577877666666555433221 122367999999999999999876
No 497
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.65 E-value=0.25 Score=45.67 Aligned_cols=22 Identities=27% Similarity=0.595 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHhch
Q 002362 199 IISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999988753
No 498
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.54 E-value=0.74 Score=45.39 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=18.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhch
Q 002362 197 LHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
-..|.|-|+.|+||||+++.+.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 499
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=87.53 E-value=2.9 Score=49.63 Aligned_cols=102 Identities=18% Similarity=0.199 Sum_probs=51.4
Q ss_pred hHHHHHHHhccCCCCCCCCeEEEEEEecCCChHHHHHHHHhchHHHHhcCCeEEEEEeCCCccHHHHHHHHHHHhcCCCC
Q 002362 178 EKNELLSKLLCESSDSPKGLHIISIIGMGGMGKTTLAQLACNHEEVKRKFDKILWVCVSETFEEFRVAKAIVEALDGHES 257 (930)
Q Consensus 178 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 257 (930)
..+.|...+.. -.++.|+|..|.||||++..+.........-...+.+.+....-...+...+...++....
T Consensus 98 q~~~i~~~l~~--------~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~ 169 (773)
T 2xau_A 98 QRDEFLKLYQN--------NQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLG 169 (773)
T ss_dssp GHHHHHHHHHH--------CSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBT
T ss_pred HHHHHHHHHhC--------CCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchh
Confidence 44555555542 2479999999999999665554321211111334444444332233344444444432110
Q ss_pred --------------C-----CccHHHHHHHHHH-HhcCceEEEEEeCccc
Q 002362 258 --------------R-----LGEFQSLIKHIYE-SVAGMCFLLVLDDVWD 287 (930)
Q Consensus 258 --------------~-----~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~ 287 (930)
. ..+...+...+.. .+-.+--+||+|.+..
T Consensus 170 ~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 170 EEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHE 219 (773)
T ss_dssp TTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGG
T ss_pred heecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccc
Confidence 0 0123344443332 2234446899999974
No 500
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.45 E-value=0.32 Score=45.21 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=21.0
Q ss_pred CeEEEEEEecCCChHHHHHHHHhch
Q 002362 196 GLHIISIIGMGGMGKTTLAQLACNH 220 (930)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (930)
..--|.|+|.+|+|||||+..+.+.
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999988753
Done!