Query 002363
Match_columns 930
No_of_seqs 396 out of 2936
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 22:21:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002363.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002363hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0104 Molecular chaperones G 100.0 9E-123 2E-127 1031.7 69.5 816 7-845 5-837 (902)
2 KOG0100 Molecular chaperones G 100.0 8E-117 2E-121 921.3 58.6 625 1-752 1-644 (663)
3 KOG0103 Molecular chaperones H 100.0 1E-114 3E-119 966.9 61.4 720 24-844 1-727 (727)
4 PTZ00009 heat shock 70 kDa pro 100.0 1.7E-97 4E-102 893.3 71.8 603 22-751 2-614 (653)
5 PRK13410 molecular chaperone D 100.0 1.8E-96 4E-101 880.4 69.1 612 24-770 2-624 (668)
6 PTZ00400 DnaK-type molecular c 100.0 9.5E-95 2.1E-99 868.6 72.3 589 22-749 39-636 (663)
7 PRK13411 molecular chaperone D 100.0 1.6E-94 3.5E-99 866.4 71.6 589 25-750 3-600 (653)
8 PRK00290 dnaK molecular chaper 100.0 8.1E-93 1.8E-97 853.2 72.0 586 25-751 3-597 (627)
9 PLN03184 chloroplast Hsp70; Pr 100.0 6.4E-93 1.4E-97 853.0 67.9 588 23-750 38-635 (673)
10 PTZ00186 heat shock 70 kDa pre 100.0 1.8E-91 4E-96 833.1 70.3 589 23-748 26-622 (657)
11 TIGR02350 prok_dnaK chaperone 100.0 1.5E-91 3.3E-96 839.9 70.0 584 25-749 1-593 (595)
12 CHL00094 dnaK heat shock prote 100.0 1.4E-91 3.1E-96 839.7 69.5 587 24-750 2-598 (621)
13 TIGR01991 HscA Fe-S protein as 100.0 2.9E-88 6.2E-93 805.9 70.8 576 26-747 1-581 (599)
14 PF00012 HSP70: Hsp70 protein; 100.0 5.4E-88 1.2E-92 816.7 61.6 591 26-750 1-601 (602)
15 PRK05183 hscA chaperone protei 100.0 9.1E-87 2E-91 794.5 69.6 578 23-749 18-599 (616)
16 KOG0101 Molecular chaperones H 100.0 9.9E-89 2.2E-93 771.2 48.7 604 20-752 3-615 (620)
17 PRK01433 hscA chaperone protei 100.0 1.7E-81 3.7E-86 742.1 66.2 556 24-750 19-579 (595)
18 KOG0102 Molecular chaperones m 100.0 1.8E-81 3.8E-86 681.0 46.0 593 21-749 24-625 (640)
19 COG0443 DnaK Molecular chapero 100.0 1.9E-79 4.1E-84 720.4 58.0 569 23-750 4-577 (579)
20 PRK11678 putative chaperone; P 100.0 3.5E-53 7.6E-58 484.7 37.5 345 26-416 2-447 (450)
21 PRK13928 rod shape-determining 100.0 8.8E-37 1.9E-41 341.8 33.0 308 27-418 6-325 (336)
22 PRK13929 rod-share determining 100.0 4.2E-36 9E-41 335.4 33.4 306 25-414 5-324 (335)
23 PRK13927 rod shape-determining 100.0 1.1E-33 2.3E-38 317.3 33.6 307 25-416 6-324 (334)
24 TIGR00904 mreB cell shape dete 100.0 4.8E-33 1E-37 311.5 33.1 307 26-416 4-327 (333)
25 PRK13930 rod shape-determining 100.0 3E-32 6.4E-37 305.9 32.7 309 26-418 10-330 (335)
26 TIGR02529 EutJ ethanolamine ut 100.0 6.2E-28 1.3E-32 255.7 26.2 200 139-412 39-238 (239)
27 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 1.7E-27 3.8E-32 259.8 25.9 307 25-415 2-320 (326)
28 PRK15080 ethanolamine utilizat 99.9 4.9E-25 1.1E-29 237.7 30.5 202 139-414 66-267 (267)
29 COG1077 MreB Actin-like ATPase 99.9 3.5E-24 7.6E-29 224.1 29.3 311 24-418 6-333 (342)
30 TIGR01174 ftsA cell division p 99.9 1.3E-20 2.8E-25 214.2 27.9 195 175-413 158-371 (371)
31 PRK09472 ftsA cell division pr 99.8 8E-19 1.7E-23 201.9 28.4 195 179-416 170-388 (420)
32 COG0849 ftsA Cell division ATP 99.7 7.9E-15 1.7E-19 164.4 25.9 207 164-417 158-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.6 2.5E-14 5.5E-19 163.0 19.1 238 140-416 75-347 (371)
34 PRK13917 plasmid segregation p 99.5 2.2E-12 4.7E-17 144.5 24.9 207 164-419 115-339 (344)
35 smart00268 ACTIN Actin. ACTIN 99.5 6.6E-13 1.4E-17 151.5 16.5 235 140-416 75-347 (373)
36 COG4820 EutJ Ethanolamine util 99.4 8.1E-13 1.8E-17 128.7 9.7 194 144-411 76-269 (277)
37 PTZ00280 Actin-related protein 99.4 8E-11 1.7E-15 135.9 24.4 224 140-393 82-338 (414)
38 PF00022 Actin: Actin; InterP 99.2 5.8E-11 1.3E-15 136.6 14.5 312 24-416 4-367 (393)
39 TIGR03739 PRTRC_D PRTRC system 99.2 5.3E-10 1.2E-14 124.5 20.9 208 160-414 101-318 (320)
40 PTZ00281 actin; Provisional 99.1 1.7E-09 3.7E-14 123.1 18.4 236 141-416 82-350 (376)
41 TIGR01175 pilM type IV pilus a 99.1 7.9E-09 1.7E-13 116.9 23.4 161 174-393 142-308 (348)
42 PTZ00004 actin-2; Provisional 99.1 2.1E-09 4.5E-14 122.7 18.7 237 140-416 81-352 (378)
43 PTZ00452 actin; Provisional 99.1 3.7E-09 7.9E-14 120.2 20.3 235 141-416 81-349 (375)
44 PTZ00466 actin-like protein; P 99.1 7.5E-09 1.6E-13 117.8 21.0 237 141-416 88-354 (380)
45 PF11104 PilM_2: Type IV pilus 99.0 7.9E-08 1.7E-12 108.2 23.7 180 176-414 137-339 (340)
46 PF06406 StbA: StbA protein; 98.7 3.5E-07 7.7E-12 101.7 16.2 172 191-411 142-316 (318)
47 PRK10719 eutA reactivating fac 98.6 1.2E-06 2.7E-11 98.6 16.6 160 161-380 88-268 (475)
48 COG5277 Actin and related prot 98.5 3E-06 6.4E-11 97.3 19.1 192 27-280 9-205 (444)
49 KOG0679 Actin-related protein 98.4 1.3E-05 2.8E-10 86.7 17.8 116 140-279 86-202 (426)
50 COG4972 PilM Tfp pilus assembl 98.4 0.00013 2.8E-09 78.1 24.1 160 177-393 151-313 (354)
51 PF07520 SrfB: Virulence facto 98.1 0.00045 9.6E-09 84.4 25.3 335 74-418 331-836 (1002)
52 KOG0676 Actin and related prot 98.1 2.5E-05 5.5E-10 86.7 11.9 210 143-392 82-315 (372)
53 TIGR00241 CoA_E_activ CoA-subs 97.9 0.00015 3.2E-09 78.0 13.1 170 193-413 73-248 (248)
54 TIGR03192 benz_CoA_bzdQ benzoy 97.8 0.003 6.6E-08 68.2 22.1 74 334-416 213-288 (293)
55 TIGR03286 methan_mark_15 putat 97.6 0.0046 9.9E-08 69.5 20.5 45 370-415 358-402 (404)
56 PF08841 DDR: Diol dehydratase 97.5 0.0031 6.7E-08 66.1 15.6 190 185-414 106-329 (332)
57 TIGR02261 benz_CoA_red_D benzo 97.5 0.018 3.9E-07 61.4 21.9 45 370-414 214-262 (262)
58 PF06277 EutA: Ethanolamine ut 97.5 0.0025 5.5E-08 72.4 15.7 89 163-268 87-178 (473)
59 COG1924 Activator of 2-hydroxy 97.4 0.018 3.9E-07 63.3 20.7 72 340-416 318-390 (396)
60 COG4457 SrfB Uncharacterized p 97.1 0.067 1.4E-06 62.1 21.3 87 330-418 743-848 (1014)
61 KOG0797 Actin-related protein 96.8 0.015 3.2E-07 65.6 12.6 121 135-278 196-322 (618)
62 PF14574 DUF4445: Domain of un 96.2 0.5 1.1E-05 54.1 20.5 60 328-388 289-348 (412)
63 TIGR02259 benz_CoA_red_A benzo 96.0 0.12 2.7E-06 57.7 14.3 46 369-414 383-432 (432)
64 PRK13317 pantothenate kinase; 95.9 0.15 3.2E-06 55.5 14.2 49 367-415 222-273 (277)
65 PF02782 FGGY_C: FGGY family o 95.8 0.011 2.3E-07 61.1 5.0 48 367-416 149-196 (198)
66 KOG0677 Actin-related protein 95.4 0.44 9.5E-06 49.6 14.6 193 162-391 102-318 (389)
67 PRK15027 xylulokinase; Provisi 94.9 0.057 1.2E-06 64.0 7.5 83 334-421 356-439 (484)
68 PF01968 Hydantoinase_A: Hydan 94.7 0.094 2E-06 57.6 8.2 68 342-412 216-283 (290)
69 PLN02669 xylulokinase 94.6 0.079 1.7E-06 63.8 7.9 49 366-416 444-492 (556)
70 TIGR01315 5C_CHO_kinase FGGY-f 94.6 0.083 1.8E-06 63.5 8.0 83 333-420 409-494 (541)
71 PF14450 FtsA: Cell division p 94.4 0.12 2.7E-06 48.7 7.1 49 218-277 1-53 (120)
72 COG1069 AraB Ribulose kinase [ 94.2 0.88 1.9E-05 52.8 14.5 66 351-421 418-483 (544)
73 KOG2517 Ribulose kinase and re 94.2 0.44 9.4E-06 55.5 12.1 74 343-421 393-466 (516)
74 TIGR01312 XylB D-xylulose kina 93.6 0.17 3.7E-06 59.9 8.0 53 367-421 390-442 (481)
75 PRK10854 exopolyphosphatase; P 93.5 1.4 3E-05 52.7 15.3 54 179-234 101-155 (513)
76 PRK00047 glpK glycerol kinase; 93.3 0.18 4E-06 60.0 7.4 53 367-421 403-455 (498)
77 TIGR01311 glycerol_kin glycero 93.1 0.17 3.7E-06 60.1 6.9 81 335-421 369-451 (493)
78 PRK04123 ribulokinase; Provisi 93.0 0.19 4.2E-06 60.6 7.2 52 367-420 438-490 (548)
79 COG4819 EutA Ethanolamine util 92.9 0.51 1.1E-05 50.9 9.2 67 163-234 89-163 (473)
80 PLN02295 glycerol kinase 92.9 0.31 6.7E-06 58.2 8.7 53 367-421 412-464 (512)
81 PRK09698 D-allose kinase; Prov 92.9 13 0.00027 41.1 21.0 43 187-233 104-146 (302)
82 TIGR01234 L-ribulokinase L-rib 92.8 0.23 5.1E-06 59.6 7.5 82 334-421 405-488 (536)
83 PTZ00294 glycerol kinase-like 92.8 0.23 5E-06 59.2 7.4 53 367-421 406-458 (504)
84 KOG0681 Actin-related protein 92.7 1.7 3.6E-05 50.1 13.4 125 136-279 91-216 (645)
85 PRK03011 butyrate kinase; Prov 92.7 1.9 4.1E-05 48.8 14.0 47 367-413 295-344 (358)
86 TIGR02628 fuculo_kin_coli L-fu 92.7 0.34 7.3E-06 57.2 8.5 52 367-420 393-444 (465)
87 PRK10331 L-fuculokinase; Provi 92.6 0.24 5.2E-06 58.5 7.1 53 367-421 389-441 (470)
88 TIGR02627 rhamnulo_kin rhamnul 92.1 0.3 6.4E-06 57.4 7.0 52 367-421 387-438 (454)
89 TIGR01314 gntK_FGGY gluconate 92.1 0.42 9E-06 57.0 8.3 82 335-421 371-453 (505)
90 PRK10640 rhaB rhamnulokinase; 91.6 0.59 1.3E-05 55.2 8.8 52 367-421 375-426 (471)
91 TIGR00555 panK_eukar pantothen 91.6 2.1 4.7E-05 46.4 12.2 47 366-412 229-278 (279)
92 KOG2531 Sugar (pentulose and h 91.5 0.44 9.5E-06 53.7 6.9 54 361-416 436-489 (545)
93 PRK10939 autoinducer-2 (AI-2) 91.3 0.58 1.3E-05 56.0 8.4 52 367-420 409-460 (520)
94 PRK09557 fructokinase; Reviewe 91.0 2.5 5.4E-05 46.7 12.6 44 187-233 96-139 (301)
95 TIGR00744 ROK_glcA_fam ROK fam 90.4 18 0.00038 40.2 18.8 95 136-233 31-140 (318)
96 PRK09604 UGMP family protein; 90.1 37 0.0008 38.1 20.9 49 367-415 254-307 (332)
97 COG1070 XylB Sugar (pentulose 88.6 1.5 3.2E-05 52.4 8.8 80 334-418 370-450 (502)
98 PF07318 DUF1464: Protein of u 88.3 8.5 0.00018 42.8 13.6 54 366-420 259-319 (343)
99 PLN02914 hexokinase 87.0 8.2 0.00018 45.4 13.3 59 173-236 204-264 (490)
100 PRK11031 guanosine pentaphosph 86.8 4.1 9E-05 48.4 11.1 56 177-234 94-150 (496)
101 PF02541 Ppx-GppA: Ppx/GppA ph 86.7 2.8 6E-05 46.0 9.0 54 179-234 75-130 (285)
102 COG1548 Predicted transcriptio 86.6 5 0.00011 42.2 9.9 71 146-234 76-148 (330)
103 smart00842 FtsA Cell division 86.4 4.3 9.3E-05 41.4 9.6 28 176-203 158-185 (187)
104 KOG0680 Actin-related protein 86.1 3.1 6.7E-05 45.1 8.3 98 162-277 94-198 (400)
105 KOG0100 Molecular chaperones G 85.7 3 6.6E-05 46.3 8.2 72 760-843 570-641 (663)
106 PRK00290 dnaK molecular chaper 84.8 2.7 5.8E-05 51.6 8.5 67 758-842 528-594 (627)
107 KOG1385 Nucleoside phosphatase 84.5 6.7 0.00014 44.2 10.3 159 25-233 68-230 (453)
108 PLN02666 5-oxoprolinase 84.3 18 0.00038 47.7 15.6 77 334-413 454-531 (1275)
109 KOG1369 Hexokinase [Carbohydra 84.2 34 0.00074 39.9 16.3 64 168-236 185-251 (474)
110 TIGR03706 exo_poly_only exopol 84.0 13 0.00027 41.2 12.6 55 177-234 87-143 (300)
111 KOG0681 Actin-related protein 83.5 1 2.3E-05 51.7 3.7 67 350-416 539-614 (645)
112 TIGR02350 prok_dnaK chaperone 83.3 3.7 7.9E-05 50.1 8.7 67 758-842 526-592 (595)
113 PRK14101 bifunctional glucokin 82.9 21 0.00045 44.0 15.1 75 341-415 243-329 (638)
114 PTZ00400 DnaK-type molecular c 82.6 4.5 9.7E-05 49.9 9.1 68 757-842 568-635 (663)
115 PTZ00288 glucokinase 1; Provis 82.6 26 0.00057 40.3 14.6 20 22-41 24-43 (405)
116 KOG0104 Molecular chaperones G 81.3 5.5 0.00012 47.9 8.5 76 727-807 635-710 (902)
117 COG3426 Butyrate kinase [Energ 81.1 33 0.00072 36.8 13.3 48 364-411 293-343 (358)
118 PRK09585 anmK anhydro-N-acetyl 80.7 6.8 0.00015 44.3 8.9 40 350-392 272-311 (365)
119 COG5026 Hexokinase [Carbohydra 80.3 5.3 0.00012 45.3 7.7 30 22-52 73-102 (466)
120 PRK13411 molecular chaperone D 80.2 6.9 0.00015 48.2 9.6 70 757-842 529-598 (653)
121 PF01869 BcrAD_BadFG: BadF/Bad 80.1 4 8.7E-05 44.3 6.8 70 342-414 198-271 (271)
122 PTZ00009 heat shock 70 kDa pro 79.0 6.6 0.00014 48.4 8.9 74 757-843 539-612 (653)
123 COG0248 GppA Exopolyphosphatas 77.8 9.4 0.0002 45.0 9.2 56 177-234 91-147 (492)
124 PTZ00107 hexokinase; Provision 77.5 1.6E+02 0.0034 34.8 22.2 40 169-208 189-230 (464)
125 PF08735 DUF1786: Putative pyr 77.1 19 0.00042 38.3 10.3 71 158-233 111-184 (254)
126 PF03702 UPF0075: Uncharacteri 75.8 6.8 0.00015 44.3 7.0 71 341-416 261-337 (364)
127 PLN02939 transferase, transfer 75.2 77 0.0017 40.4 16.3 177 647-832 237-426 (977)
128 PRK09605 bifunctional UGMP fam 74.3 2E+02 0.0044 34.5 20.3 52 367-418 245-301 (535)
129 CHL00094 dnaK heat shock prote 73.2 9.8 0.00021 46.6 8.2 66 758-841 530-595 (621)
130 COG0145 HyuA N-methylhydantoin 73.0 5 0.00011 49.1 5.5 42 191-234 255-296 (674)
131 PLN02362 hexokinase 72.9 6.4 0.00014 46.5 6.2 22 23-44 94-115 (509)
132 COG0533 QRI7 Metal-dependent p 72.9 17 0.00036 40.4 8.9 54 334-392 229-286 (342)
133 PF03652 UPF0081: Uncharacteri 71.1 5.9 0.00013 38.2 4.4 18 24-41 1-18 (135)
134 PLN03184 chloroplast Hsp70; Pr 71.0 19 0.00041 44.6 9.9 66 758-841 567-632 (673)
135 PLN02405 hexokinase 69.7 7.3 0.00016 45.9 5.6 58 173-235 204-263 (497)
136 COG0554 GlpK Glycerol kinase [ 68.7 20 0.00043 41.4 8.6 83 334-421 371-454 (499)
137 TIGR03723 bact_gcp putative gl 67.7 2E+02 0.0044 31.9 19.3 44 367-411 259-308 (314)
138 TIGR03281 methan_mark_12 putat 67.1 17 0.00037 39.5 7.2 86 333-421 222-316 (326)
139 TIGR00329 gcp_kae1 metallohydr 66.9 1.4E+02 0.0029 33.1 14.8 38 349-391 245-282 (305)
140 PTZ00340 O-sialoglycoprotein e 66.6 2.3E+02 0.0049 32.0 18.6 42 346-392 247-288 (345)
141 cd06007 R3H_DEXH_helicase R3H 66.3 16 0.00034 29.8 5.2 37 153-191 8-44 (59)
142 COG1940 NagC Transcriptional r 64.0 87 0.0019 34.6 12.7 39 186-226 105-143 (314)
143 PF11593 Med3: Mediator comple 64.0 31 0.00067 38.3 8.6 42 711-754 9-50 (379)
144 smart00732 YqgFc Likely ribonu 63.8 5.8 0.00012 35.5 2.7 17 25-41 2-18 (99)
145 PRK00976 hypothetical protein; 61.9 17 0.00037 40.2 6.3 51 367-420 263-315 (326)
146 PF00012 HSP70: Hsp70 protein; 61.4 27 0.00058 42.6 8.7 71 755-842 529-599 (602)
147 KOG0103 Molecular chaperones H 61.2 0.21 4.5E-06 58.9 -8.9 203 653-857 260-466 (727)
148 cd02640 R3H_NRF R3H domain of 59.7 26 0.00055 28.7 5.4 41 150-191 5-45 (60)
149 PRK14878 UGMP family protein; 59.7 2.9E+02 0.0062 30.9 20.6 41 367-408 241-287 (323)
150 PRK00109 Holliday junction res 59.6 16 0.00034 35.4 5.0 19 23-41 3-21 (138)
151 PLN02596 hexokinase-like 58.1 18 0.00038 42.7 5.9 57 175-236 206-264 (490)
152 COG4012 Uncharacterized protei 58.0 45 0.00098 35.4 8.1 94 167-281 185-278 (342)
153 PRK02224 chromosome segregatio 56.5 1.4E+02 0.0031 38.2 14.5 45 647-691 146-190 (880)
154 PF00370 FGGY_N: FGGY family o 56.4 11 0.00024 40.1 3.7 17 26-42 2-18 (245)
155 COG2377 Predicted molecular ch 55.9 1.7E+02 0.0037 33.0 12.6 54 364-417 287-344 (371)
156 PRK05082 N-acetylmannosamine k 55.2 1.3E+02 0.0027 32.9 11.9 71 344-415 211-287 (291)
157 PF02543 CmcH_NodU: Carbamoylt 53.7 27 0.00057 39.7 6.3 82 333-419 132-216 (360)
158 PRK04778 septation ring format 53.1 5E+02 0.011 31.5 19.1 157 677-840 230-396 (569)
159 PRK05183 hscA chaperone protei 53.0 61 0.0013 39.7 9.7 64 760-841 534-597 (616)
160 KOG0994 Extracellular matrix g 52.0 2.2E+02 0.0048 36.5 13.6 47 661-712 1455-1501(1758)
161 TIGR03123 one_C_unchar_1 proba 51.4 10 0.00022 42.0 2.5 53 334-394 245-301 (318)
162 TIGR00143 hypF [NiFe] hydrogen 51.1 20 0.00043 44.5 5.1 49 367-415 658-711 (711)
163 PRK13410 molecular chaperone D 50.4 61 0.0013 40.1 9.2 70 757-841 529-599 (668)
164 KOG0678 Actin-related protein 50.2 1.3E+02 0.0028 33.3 10.1 98 163-277 108-208 (415)
165 KOG1656 Protein involved in gl 49.2 3.1E+02 0.0068 28.1 13.5 119 728-854 70-193 (221)
166 KOG0101 Molecular chaperones H 49.2 32 0.00069 41.4 6.2 69 760-843 544-612 (620)
167 KOG2707 Predicted metalloprote 48.8 4.3E+02 0.0094 29.6 17.6 232 140-393 80-331 (405)
168 KOG3958 Putative dynamitin [Cy 47.6 1.6E+02 0.0035 31.8 10.2 117 707-840 254-370 (371)
169 PF07106 TBPIP: Tat binding pr 47.2 70 0.0015 32.0 7.6 74 730-803 83-162 (169)
170 KOG2196 Nuclear porin [Nuclear 46.4 3.5E+02 0.0075 28.6 12.2 44 647-690 71-115 (254)
171 KOG2708 Predicted metalloprote 46.3 3.7E+02 0.0081 28.2 14.0 74 333-412 224-300 (336)
172 KOG4603 TBP-1 interacting prot 46.1 1.1E+02 0.0025 30.2 8.2 76 728-803 88-169 (201)
173 PRK13310 N-acetyl-D-glucosamin 45.0 1.7E+02 0.0038 32.0 11.1 45 186-233 95-139 (303)
174 COG0816 Predicted endonuclease 44.8 18 0.00039 35.1 2.7 18 24-41 2-19 (141)
175 PF08317 Spc7: Spc7 kinetochor 44.5 4.9E+02 0.011 29.0 14.8 20 780-799 270-289 (325)
176 PRK03918 chromosome segregatio 43.7 4.1E+02 0.0089 34.1 15.7 12 372-383 27-40 (880)
177 COG1070 XylB Sugar (pentulose 43.7 18 0.00039 43.1 3.2 21 22-42 2-22 (502)
178 PRK07058 acetate kinase; Provi 43.2 1.8E+02 0.0039 33.3 10.6 47 342-392 297-344 (396)
179 PLN02920 pantothenate kinase 1 42.6 95 0.0021 35.4 8.3 50 366-415 296-351 (398)
180 TIGR01991 HscA Fe-S protein as 42.6 1.3E+02 0.0028 36.7 10.3 63 761-841 519-581 (599)
181 PRK10939 autoinducer-2 (AI-2) 42.5 19 0.00041 43.2 3.1 18 25-42 4-21 (520)
182 PRK10331 L-fuculokinase; Provi 42.2 19 0.00041 42.6 2.9 18 25-42 3-20 (470)
183 cd00529 RuvC_resolvase Hollida 42.2 27 0.00059 34.4 3.6 16 26-41 2-17 (154)
184 COG2441 Predicted butyrate kin 42.1 95 0.002 33.4 7.5 53 367-420 273-336 (374)
185 cd02641 R3H_Smubp-2_like R3H d 41.8 66 0.0014 26.3 5.2 29 163-191 17-45 (60)
186 cd00529 RuvC_resolvase Hollida 41.5 1.8E+02 0.0039 28.6 9.3 66 347-414 80-150 (154)
187 KOG0250 DNA repair protein RAD 40.2 6.4E+02 0.014 32.6 15.3 114 726-840 755-884 (1074)
188 smart00787 Spc7 Spc7 kinetocho 40.0 5.7E+02 0.012 28.4 14.2 36 761-800 250-285 (312)
189 PTZ00294 glycerol kinase-like 39.8 28 0.0006 41.5 3.9 18 25-42 3-20 (504)
190 PF00349 Hexokinase_1: Hexokin 39.8 81 0.0018 32.8 6.8 24 213-236 60-83 (206)
191 PF02801 Ketoacyl-synt_C: Beta 39.2 36 0.00078 31.8 3.8 47 348-394 25-73 (119)
192 TIGR02628 fuculo_kin_coli L-fu 39.2 21 0.00046 42.1 2.7 18 25-42 2-19 (465)
193 PRK15027 xylulokinase; Provisi 39.0 20 0.00044 42.5 2.6 17 26-42 2-18 (484)
194 cd02646 R3H_G-patch R3H domain 38.6 66 0.0014 26.0 4.7 41 148-191 3-43 (58)
195 PLN02377 3-ketoacyl-CoA syntha 38.4 65 0.0014 38.2 6.5 55 340-394 166-221 (502)
196 PF14450 FtsA: Cell division p 38.1 30 0.00065 32.5 3.1 59 142-204 48-119 (120)
197 PRK00180 acetate kinase A/prop 37.9 2.4E+02 0.0053 32.5 10.8 47 343-392 302-349 (402)
198 TIGR00241 CoA_E_activ CoA-subs 37.7 23 0.00049 37.9 2.5 16 26-41 2-17 (248)
199 PRK01433 hscA chaperone protei 37.4 1.7E+02 0.0036 35.8 10.0 41 760-803 512-552 (595)
200 PF00480 ROK: ROK family; Int 37.2 1.1E+02 0.0024 30.4 7.3 88 137-233 31-134 (179)
201 COG4012 Uncharacterized protei 36.9 75 0.0016 33.9 5.8 82 217-310 2-97 (342)
202 TIGR01234 L-ribulokinase L-rib 36.8 25 0.00054 42.3 2.9 17 25-41 2-18 (536)
203 PRK10869 recombination and rep 36.3 7.8E+02 0.017 29.8 15.4 22 371-393 25-48 (553)
204 PF00349 Hexokinase_1: Hexokin 35.9 43 0.00093 34.8 4.1 33 174-206 168-203 (206)
205 TIGR03722 arch_KAE1 universal 35.5 6.6E+02 0.014 27.9 21.2 43 367-409 242-289 (322)
206 TIGR01314 gntK_FGGY gluconate 35.1 26 0.00056 41.8 2.6 17 26-42 2-18 (505)
207 PLN02295 glycerol kinase 35.0 27 0.00058 41.8 2.7 17 26-42 2-18 (512)
208 cd02639 R3H_RRM R3H domain of 34.9 71 0.0015 26.1 4.3 30 162-191 16-45 (60)
209 TIGR01311 glycerol_kin glycero 34.4 32 0.00069 40.9 3.2 17 25-41 2-18 (493)
210 TIGR01315 5C_CHO_kinase FGGY-f 34.1 28 0.0006 42.0 2.7 17 26-42 2-18 (541)
211 COG5026 Hexokinase [Carbohydra 33.3 1.1E+02 0.0023 35.3 6.7 24 213-236 72-95 (466)
212 PRK00047 glpK glycerol kinase; 32.8 30 0.00066 41.1 2.7 17 25-41 6-22 (498)
213 PRK00039 ruvC Holliday junctio 32.5 52 0.0011 32.9 3.9 18 24-41 2-19 (164)
214 KOG2002 TPR-containing nuclear 31.9 2.6E+02 0.0055 35.5 10.1 29 726-755 773-801 (1018)
215 COG1579 Zn-ribbon protein, pos 31.8 5.1E+02 0.011 27.6 11.1 14 706-719 69-82 (239)
216 PTZ00186 heat shock 70 kDa pre 31.4 3E+02 0.0064 34.1 10.9 67 758-841 555-621 (657)
217 TIGR00250 RNAse_H_YqgF RNAse H 30.2 46 0.001 31.8 2.9 15 27-41 1-15 (130)
218 PRK04123 ribulokinase; Provisi 29.9 38 0.00083 40.8 2.9 17 25-41 4-20 (548)
219 TIGR00634 recN DNA repair prot 29.9 1.1E+03 0.023 28.6 17.7 39 739-777 283-321 (563)
220 PRK07515 3-oxoacyl-(acyl carri 29.9 76 0.0016 36.1 5.2 48 343-392 266-313 (372)
221 PF03962 Mnd1: Mnd1 family; I 29.5 4.9E+02 0.011 26.6 10.4 24 755-778 133-156 (188)
222 COG4296 Uncharacterized protei 29.4 78 0.0017 30.0 4.1 23 714-736 90-112 (156)
223 PLN02669 xylulokinase 28.9 44 0.00095 40.4 3.2 21 22-42 6-26 (556)
224 PRK04863 mukB cell division pr 28.5 1.7E+03 0.037 30.6 18.0 49 780-841 432-484 (1486)
225 PLN03172 chalcone synthase fam 28.4 1.3E+02 0.0028 34.7 6.7 51 344-394 100-151 (393)
226 PF01150 GDA1_CD39: GDA1/CD39 28.4 53 0.0012 38.3 3.7 42 192-233 130-181 (434)
227 PLN03173 chalcone synthase; Pr 27.6 1.4E+02 0.0031 34.3 6.9 50 345-394 101-151 (391)
228 PLN03170 chalcone synthase; Pr 27.6 2.2E+02 0.0048 32.8 8.5 51 344-394 104-155 (401)
229 TIGR03185 DNA_S_dndD DNA sulfu 27.2 4.9E+02 0.011 32.1 12.0 65 647-717 370-435 (650)
230 PRK05082 N-acetylmannosamine k 27.2 1.8E+02 0.0039 31.7 7.4 37 187-226 96-132 (291)
231 PRK13317 pantothenate kinase; 27.2 49 0.0011 36.1 2.9 18 24-41 2-19 (277)
232 KOG0797 Actin-related protein 27.1 27 0.00058 40.5 0.8 53 366-418 525-591 (618)
233 PRK00877 hisD bifunctional his 27.0 72 0.0016 36.8 4.2 48 161-209 151-199 (425)
234 PLN02854 3-ketoacyl-CoA syntha 26.9 1.1E+02 0.0023 36.5 5.8 55 333-394 182-237 (521)
235 PF06840 DUF1241: Protein of u 26.8 4.6E+02 0.01 25.9 9.1 34 737-772 12-45 (154)
236 PRK11024 colicin uptake protei 26.8 5.8E+02 0.013 24.5 13.2 36 163-198 105-140 (141)
237 PF02075 RuvC: Crossover junct 25.7 66 0.0014 31.5 3.2 27 26-54 1-27 (149)
238 PF00815 Histidinol_dh: Histid 25.3 1.1E+02 0.0024 35.2 5.3 49 161-209 137-186 (412)
239 KOG0964 Structural maintenance 25.2 1.6E+03 0.034 29.0 15.8 19 792-810 362-380 (1200)
240 TIGR00016 ackA acetate kinase. 25.1 5.7E+02 0.012 29.5 10.9 46 344-392 307-353 (404)
241 PF08392 FAE1_CUT1_RppA: FAE1/ 24.6 1.7E+02 0.0036 32.1 6.3 45 350-394 87-132 (290)
242 PLN02404 6,7-dimethyl-8-ribity 24.5 65 0.0014 31.3 2.8 78 325-415 3-80 (141)
243 TIGR02259 benz_CoA_red_A benzo 24.1 63 0.0014 36.8 3.0 17 25-41 3-19 (432)
244 cd00327 cond_enzymes Condensin 23.7 2.1E+02 0.0045 30.2 7.0 44 350-393 11-56 (254)
245 PF04839 PSRP-3_Ycf65: Plastid 23.4 2E+02 0.0043 22.5 4.6 26 779-804 22-47 (49)
246 KOG2517 Ribulose kinase and re 23.3 66 0.0014 38.0 3.1 24 23-46 5-28 (516)
247 COG2069 CdhD CO dehydrogenase/ 23.2 1.4E+02 0.0031 32.3 5.2 70 162-232 251-329 (403)
248 PRK13310 N-acetyl-D-glucosamin 23.1 1.9E+02 0.0041 31.7 6.7 70 345-415 224-301 (303)
249 PF13941 MutL: MutL protein 23.0 36 0.00079 39.7 0.9 33 198-230 230-262 (457)
250 PF12128 DUF3584: Protein of u 22.9 1.5E+03 0.032 30.4 15.9 45 703-747 743-792 (1201)
251 PRK12879 3-oxoacyl-(acyl carri 22.9 1.6E+02 0.0034 32.6 6.1 48 343-393 220-267 (325)
252 PRK00039 ruvC Holliday junctio 22.8 6.4E+02 0.014 25.1 9.6 69 347-418 82-156 (164)
253 cd00176 SPEC Spectrin repeats, 22.7 7.6E+02 0.016 24.5 11.6 39 798-840 118-156 (213)
254 cd06572 Histidinol_dh Histidin 22.3 1.8E+02 0.0038 33.4 6.1 73 161-233 123-212 (390)
255 PRK13321 pantothenate kinase; 22.3 72 0.0016 34.3 3.0 16 26-41 2-17 (256)
256 COG0141 HisD Histidinol dehydr 22.0 69 0.0015 36.6 2.8 48 161-209 147-195 (425)
257 PLN02192 3-ketoacyl-CoA syntha 21.4 2.3E+02 0.0049 33.8 7.0 53 342-394 172-225 (511)
258 KOG2150 CCR4-NOT transcription 21.3 3.7E+02 0.0081 32.0 8.5 41 704-752 50-90 (575)
259 PF07765 KIP1: KIP1-like prote 21.2 1.5E+02 0.0033 25.3 4.0 56 716-776 13-73 (74)
260 PF04848 Pox_A22: Poxvirus A22 21.2 1.3E+02 0.0028 29.4 4.1 19 24-42 1-19 (143)
261 PF06160 EzrA: Septation ring 21.0 1.5E+03 0.033 27.3 14.6 171 659-842 59-241 (560)
262 PRK04863 mukB cell division pr 21.0 2.3E+03 0.049 29.4 17.8 20 703-722 321-340 (1486)
263 PRK09352 3-oxoacyl-(acyl carri 21.0 1.9E+02 0.0041 31.9 6.2 47 344-393 215-261 (319)
264 KOG0996 Structural maintenance 20.8 2E+03 0.043 28.7 15.9 19 646-664 774-792 (1293)
265 TIGR02169 SMC_prok_A chromosom 20.7 1E+03 0.022 31.5 14.0 44 647-690 150-193 (1164)
266 PRK13318 pantothenate kinase; 20.7 83 0.0018 33.8 3.1 16 26-41 2-17 (258)
267 PRK12440 acetate kinase; Revie 20.2 3E+02 0.0064 31.7 7.3 46 343-392 300-346 (397)
268 PRK03918 chromosome segregatio 20.1 7E+02 0.015 31.9 11.9 51 700-752 656-706 (880)
No 1
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-123 Score=1031.71 Aligned_cols=816 Identities=34% Similarity=0.548 Sum_probs=678.7
Q ss_pred HHHHHHHHHHhhhcCCCccEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEeCCcEEEcHhHHhhHhhC
Q 002363 7 KLLTFLSVASLLVSHSQSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARY 86 (930)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~ 86 (930)
|+++++++.+++...+.++|++|||||.|++||++ +|| .|++|++|..++|++|++|+|.+++|+||.+|.+++.|+
T Consensus 5 ~llv~l~~~~~~~~~~~~AvmsVDlGse~~Kv~vV--kPG-vPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~ 81 (902)
T KOG0104|consen 5 VLLVILLLCLFVALSSALAVMSVDLGSEWIKVAVV--KPG-VPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRF 81 (902)
T ss_pred hHHHHHHHHHHhcccchhhheeeecccceeEEEEe--cCC-CCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcC
Confidence 33444444344555677899999999999999999 998 999999999999999999999999999999999999999
Q ss_pred ccchHhHhhhhhCCCchh-hHhhHhhcCCCceEEECC-CCceEEEeCCCceecHHHHHHHHHHHHHHHHHHhccCccccE
Q 002363 87 PHRVYSQLRDMIGKPFKQ-VKHLIDSLYLPFNVVEDS-RGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDF 164 (930)
Q Consensus 87 p~~~~~~~K~llG~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~ 164 (930)
|++++.+++.|||++..+ ......+.+++|.++.++ ++++.|.+.+...|++|+|+||+|.|.+..|+.+...+|.++
T Consensus 82 P~~~~~~l~~llgk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ 161 (902)
T KOG0104|consen 82 PQSTYRQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDM 161 (902)
T ss_pred cHHHHHHHHHHhCcccCCcHHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcchhhe
Confidence 999999999999994322 333445668999999997 999999998878899999999999999999999999999999
Q ss_pred EEeeCCCCCHHHHHHHHHHHHHcCCCeeEEechhhHHHHHhcccc--CCCCCCcEEEEEEcCCCceEEEEEEEeeccccc
Q 002363 165 VISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDK--DFSNESRHVVFYDMGATTTYAALVYFSAYNAKV 242 (930)
Q Consensus 165 VItVPa~f~~~qR~al~~Aa~~AGl~~l~Li~EptAAAl~y~~~~--~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~ 242 (930)
|||||.||+++||+++++||++||++++.||||.+||||.||+.+ .+..+++++||||||+|+|.++||.|..+..+.
T Consensus 162 ViTVP~~F~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~ 241 (902)
T KOG0104|consen 162 VITVPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKE 241 (902)
T ss_pred EEeCCcccCHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeecccc
Confidence 999999999999999999999999999999999999999999976 677889999999999999999999999887777
Q ss_pred ccceeccceEEEEEecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCCcccEEEe
Q 002363 243 YGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVE 322 (930)
Q Consensus 243 ~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~i~ie 322 (930)
.| ...+++++++++||+.|||..|.++|.+||.+.|.++++.+.++..+||+|+||.++|+++|.+||+|.++.++|+
T Consensus 242 ~g--~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIE 319 (902)
T KOG0104|consen 242 QG--GKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIE 319 (902)
T ss_pred cc--CccceEEEEeeccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHH
Confidence 65 3467899999999999999999999999999999999777778999999999999999999999999999999999
Q ss_pred ecccCcccEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCc
Q 002363 323 SLYVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDA 402 (930)
Q Consensus 323 ~l~~~~d~~~~ItR~efe~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~ 402 (930)
+|++|+||+.+|||++||++|++++.|+..||+++|..++++.++|+.|+|+||+||+|.||+.|.+++|..++++++|+
T Consensus 320 sL~ddiDFr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNa 399 (902)
T KOG0104|consen 320 SLIDDIDFRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNA 399 (902)
T ss_pred HHhhccccccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcccHHHHhhhcCCccccCceeEEeecccceeeeecCC-cccCCCCceeEEEeCCCCCCcceeEeeeec-ccEEEE
Q 002363 403 DEAIVLGASLLAANLSDGIKLNRKLGMVDGSSYGFVVELDGP-ELQKDESTRQLLAPRMKKLPSKMFRSIIHA-KDFEVS 480 (930)
Q Consensus 403 deaVa~GAa~~aa~ls~~~~~~~~~~i~d~~~~~igi~~~~~-~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~-~~~~i~ 480 (930)
|||+++||+|+||.||.+|++ ++|.+.|.++|+|.|++.+. .....++....+|++|.+||.+++++|+.. .+|.+.
T Consensus 400 DEA~vmGav~~aA~LSksFKv-Kpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysddf~~~ 478 (902)
T KOG0104|consen 400 DEAAVMGAVYQAAHLSKSFKV-KPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDDFPFN 478 (902)
T ss_pred hHHHHHHHHHHHHhhcccccc-cceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCccccc
Confidence 999999999999999999999 99999999999999998875 222344556689999999999999999876 579998
Q ss_pred EEeecCCCCCCCCCCCceeEEEEcCCccchhhhccCCCCCCceeEEEEEEccCcceEEeeeeeEEEEEEeeecCcccccc
Q 002363 481 LAYESEDLLPPGATSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIV 560 (930)
Q Consensus 481 ~~y~~~~~~~~~~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~a~~~~e~~~~~~~~~~~~~~ 560 (930)
++|..- ..++..|.++||.++.+++....... ..|+++|.+|.+|++.|..++++++.....+...+..+.
T Consensus 479 ~n~~~~--------~~nl~~velsgV~d~~kk~~~~~~~~-KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~ 549 (902)
T KOG0104|consen 479 INYGDL--------GQNLTTVELSGVKDALKKNSYSDSES-KGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTL 549 (902)
T ss_pred cchhhh--------ccCccEEEEecchHHHHhcccchhhc-cCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhh
Confidence 877542 14567899999999887765431112 269999999999999999999998753222111111110
Q ss_pred ccc--cCCCCCCchhhhhhcc-ccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCchhhhhhhcccc--ceeeeeeE
Q 002363 561 ENV--ASSSPNISAETAAQNM-TVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKK--RTFRVPLK 635 (930)
Q Consensus 561 ~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~--~~~~~~l~ 635 (930)
.+. +... ..+..+....+ .+..+.++.+ .++..+...+..++......+..+....+++|..+ -+.++++.
T Consensus 550 ~K~~~~~e~-e~~~~~~~~~e~ae~k~~ep~e---~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~ 625 (902)
T KOG0104|consen 550 SKLGSTSEG-EETSDDSVQEEDAEEKGLEPSE---RSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQ 625 (902)
T ss_pred hcccccccc-ccccccccchhhhhhhccCccc---cccccccccccccccccccccchhccCcchhhcccCcceeEeeee
Confidence 000 0000 00000000000 0000000000 00000000000000000000000111111222222 22334444
Q ss_pred EEeeccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhhccCcccccccCCHHHHHHHHHHHHHH
Q 002363 636 IVEKTVGPGASLSKEALVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEA 715 (930)
Q Consensus 636 ~~~~~~~~~~~ls~~~l~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iY~~r~~l~~~~~~~~~~~~~er~~l~~~l~e~ 715 (930)
.+ .... .-|+...+..++.+|..+.++|+.+.+|++|.|.||+|+|++.++|++++ |..|++++|+..|.+.+..+
T Consensus 626 ~~--~~~~-~~l~~~~~~~~~~kl~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~e-y~e~at~EEk~~L~~~~~~~ 701 (902)
T KOG0104|consen 626 ET--YPDL-PVLNENALDAAVAKLEDFVQKEKEKSEREEASNELEAFLFELQDKLDDDE-YAEVATEEEKKILKKKVSLL 701 (902)
T ss_pred ee--cccc-cCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCch-HhhhcCHHHHHHHHHHHHHH
Confidence 43 2121 13999999999999999999999999999999999999999999999976 99999999999999999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHhccchHHHhHHhhhcchHHHHHHHHHHHHHHHHHh------ccccCCCCCChhhhH
Q 002363 716 QEWLYTDGEDATAKEFQERLDVLKAIGDPVFFRFKELTARPASVEHAQKYLGQLQQIVN------DWETNKPWLPKDRTD 789 (930)
Q Consensus 716 ~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~ai~~l~~~l~~~~~~~~------~~~~~~~~it~~e~~ 789 (930)
.+||+++|.+.++.+|.+|+.+|++++..+.+|..++..+|..++.+...|++..+++. .|+++...++..+++
T Consensus 702 ~~Wleed~~~~~t~~~~ek~a~L~~l~~~~~~R~ee~kq~pe~l~~l~~~l~~s~~~l~~~~~~~~~~E~d~~ft~~e~~ 781 (902)
T KOG0104|consen 702 MDWLEEDGSQTPTEMLTEKLAELKKLETSKNFREEERKQFPEELEALKNLLNRSFSFLKQARNLSTWEEKDTIFTKTEID 781 (902)
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccccccchhccchhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999874 456777789999999
Q ss_pred HHHHhHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHHHhhhcCCCC
Q 002363 790 EVLKDSETFKSWLDEKENDQKKTSGFSKPAFTSEEVYEKILKLQDKINSINRIPKP 845 (930)
Q Consensus 790 ~l~~~~~~~~~Wl~~~~~~Q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~kpkP 845 (930)
.|.+.++++..||++....|.++++++||+++++||..|++.|++.+.+++||.|-
T Consensus 782 ~L~k~i~~t~~W~~~~~~~~~k~~k~edp~~k~kei~~K~k~Ldrev~~~lnK~k~ 837 (902)
T KOG0104|consen 782 TLEKVIAKTTAWLNDRLDLFEKKAKTEDPVLKVKEIEEKAKSLDREVLYLLNKLKI 837 (902)
T ss_pred HHHHHHHHhHHHhhhhHHHHHhhhcccCccccHHHHHHHHHhhHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999986654
No 2
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-117 Score=921.26 Aligned_cols=625 Identities=28% Similarity=0.515 Sum_probs=567.0
Q ss_pred ChhhHHHHHHHHHHHHhh--hc----------CCCccEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEE
Q 002363 1 MKRMLLKLLTFLSVASLL--VS----------HSQSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAF 68 (930)
Q Consensus 1 m~~~~~~~~~~~~~~~~~--~~----------~~~~~vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~ 68 (930)
||+.+++.+++++.++++ .. .....||||||||||+||+++ ++| .++|+.|++|+|.+||+|+|
T Consensus 1 mk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gtvigIdLGTTYsCVgV~--kNg--rvEIiANdQGNRItPSyVaF 76 (663)
T KOG0100|consen 1 MKLSFLLAMLLFLAVLFFGCSEAASTEKEDEAEKLGTVIGIDLGTTYSCVGVY--KNG--RVEIIANDQGNRITPSYVAF 76 (663)
T ss_pred CchHHHHHHHHHHHHHHhhhhhhhhhccccchhccceEEEEecCCceeeEEEE--eCC--eEEEEecCCCCccccceeee
Confidence 787665555544443332 11 124689999999999999999 887 68999999999999999999
Q ss_pred eCCcEEEcHhHHhhHhhCccchHhHhhhhhCCCchhhHhhHhhcCCCceEEECC-CCceEEEeCCC--ceecHHHHHHHH
Q 002363 69 HESTRLLGEEASGIIARYPHRVYSQLRDMIGKPFKQVKHLIDSLYLPFNVVEDS-RGAVSFKIDEN--NNFSVEELLAMV 145 (930)
Q Consensus 69 ~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~eel~a~~ 145 (930)
.+.+|++|..|++++..||.+++++.|||||+.+.+...+.+.++|||+++... +..+.+.+.+| +.|+|++++||+
T Consensus 77 t~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMi 156 (663)
T KOG0100|consen 77 TDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKSVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMI 156 (663)
T ss_pred ccchhhhhhHhhcccccCcccceechHHHhCcccCChhhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHH
Confidence 999999999999999999999999999999997766656667789999999864 44566666655 789999999999
Q ss_pred HHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCC
Q 002363 146 LSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGA 225 (930)
Q Consensus 146 L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~Gg 225 (930)
|..+++.|+.|+|.++.++|+||||||+++||+|+++|..+|||+|+|+||||||||++||+++ ..+.+++||||+||
T Consensus 157 L~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKDAGtIAgLnV~RIiNePTaAAIAYGLDK--k~gEknilVfDLGG 234 (663)
T KOG0100|consen 157 LTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDK--KDGEKNILVFDLGG 234 (663)
T ss_pred HHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcccceeccceEEEeecCccHHHHHhcccc--cCCcceEEEEEcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999987 45678999999999
Q ss_pred CceEEEEEEEeecccccccceeccceEEEEEecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHH
Q 002363 226 TTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVK 305 (930)
Q Consensus 226 gT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~ae 305 (930)
||||||++. +.+|.|+|+++.||.+|||.|||+++++||.+.|+++ ++.|++.+.+++.+|+++||
T Consensus 235 GTFDVSlLt------------IdnGVFeVlaTnGDThLGGEDFD~rvm~~fiklykkK--~gkDv~kdnkA~~KLrRe~E 300 (663)
T KOG0100|consen 235 GTFDVSLLT------------IDNGVFEVLATNGDTHLGGEDFDQRVMEYFIKLYKKK--HGKDVRKDNKAVQKLRREVE 300 (663)
T ss_pred ceEEEEEEE------------EcCceEEEEecCCCcccCccchHHHHHHHHHHHHhhh--cCCccchhhHHHHHHHHHHH
Confidence 999999994 4589999999999999999999999999999999999 99999999999999999999
Q ss_pred HHhhhhcCCCcccEEEeecccCcccEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHH
Q 002363 306 RTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQA 385 (930)
Q Consensus 306 k~K~~LS~~~~~~i~ie~l~~~~d~~~~ItR~efe~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~ 385 (930)
++|+.||...++.|.|++|++|.||+-++||..||+|.-++|.....|+.++|+++++...+|+.|+||||++|||.||+
T Consensus 301 kAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQq 380 (663)
T KOG0100|consen 301 KAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQ 380 (663)
T ss_pred HHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccCCCCCcchhhhcccHHHHhhhcCCccccCceeEEeecccceeeeecCCcccCCCCceeEEEeCCCCCCc
Q 002363 386 KLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPS 465 (930)
Q Consensus 386 ~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls~~~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~ 465 (930)
+|+++|++++.++.+|||||||+|||.+|..||+.-.. .++.+.|++|..+||++.|+-|. .||||++.+|+
T Consensus 381 llk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t-~divLLDv~pLtlGIETvGGVMT-------klI~RNTviPT 452 (663)
T KOG0100|consen 381 LLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDT-GDIVLLDVNPLTLGIETVGGVMT-------KLIPRNTVIPT 452 (663)
T ss_pred HHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCc-CcEEEEeeccccceeeeecceee-------ccccCCcccCc
Confidence 99999988899999999999999999999999998888 89999999999999999998875 79999999999
Q ss_pred ceeEeeeecc----cEEEEEEeecCCCCCCCCCCCceeEEEEcCCccchhhhccCCCCCCceeEEEEEEccCcceEEeee
Q 002363 466 KMFRSIIHAK----DFEVSLAYESEDLLPPGATSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRA 541 (930)
Q Consensus 466 ~k~~~f~~~~----~~~i~~~y~~~~~~~~~~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~a 541 (930)
+++..|++.. .++|.+ |+|++.+.. +|+.+|.|.++|||+++ +| .| .|.|+|.+|.||+|+|+.-
T Consensus 453 kKSQvFsTa~DnQ~tV~I~v-yEGER~mtk--dn~lLGkFdltGipPAP-----RG--vp-qIEVtFevDangiL~VsAe 521 (663)
T KOG0100|consen 453 KKSQVFSTAQDNQPTVTIQV-YEGERPMTK--DNHLLGKFDLTGIPPAP-----RG--VP-QIEVTFEVDANGILQVSAE 521 (663)
T ss_pred cccceeeecccCCceEEEEE-eeccccccc--cccccccccccCCCCCC-----CC--Cc-cEEEEEEEccCceEEEEee
Confidence 9999998753 478888 999999877 69999999999999996 44 67 9999999999999987533
Q ss_pred eeEEEEEEeeecCccccccccccCCCCCCchhhhhhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCchhhhh
Q 002363 542 DAVIEITEWVEVPKKNLIVENVASSSPNISAETAAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLT 621 (930)
Q Consensus 542 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (930)
+- ++ . .+
T Consensus 522 DK-------------------------------gt-----------------g-~~------------------------ 528 (663)
T KOG0100|consen 522 DK-------------------------------GT-----------------G-KK------------------------ 528 (663)
T ss_pred cc-------------------------------CC-----------------C-Cc------------------------
Confidence 20 00 0 00
Q ss_pred hhccccceeeeeeEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhhccCcccccccCC
Q 002363 622 EKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVST 701 (930)
Q Consensus 622 ~~k~k~~~~~~~l~~~~~~~~~~~~ls~~~l~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iY~~r~~l~~~~~~~~~~~ 701 (930)
-.|+|++. ...||+++++++.+..++|...|+..+++.++||.||+|.|.|++.+.+.+.+....+
T Consensus 529 ----------~kitItNd----~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~ 594 (663)
T KOG0100|consen 529 ----------EKITITND----KGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLS 594 (663)
T ss_pred ----------ceEEEecC----CCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCC
Confidence 03555532 2369999999999999999999999999999999999999999999998777999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHhHHhh
Q 002363 702 SEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDVLKAIGDPVFFRFKEL 752 (930)
Q Consensus 702 ~~er~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~ 752 (930)
+++++.+...+++..+||.++ ++|.+++|.+|+++|..+++||...++..
T Consensus 595 ~edKe~~e~av~e~~eWL~~n-~~a~~Ee~~ek~kele~vv~PiisklY~~ 644 (663)
T KOG0100|consen 595 DEDKETIEDAVEEALEWLESN-QDASKEEFKEKKKELEAVVQPIISKLYGG 644 (663)
T ss_pred hhHHHHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999 99999999999999999999999887653
No 3
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-114 Score=966.94 Aligned_cols=720 Identities=30% Similarity=0.497 Sum_probs=642.8
Q ss_pred ccEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEeCCcEEEcHhHHhhHhhCccchHhHhhhhhCCCch
Q 002363 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKPFK 103 (930)
Q Consensus 24 ~~vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~ 103 (930)
|+|+|||||..+|.+|++ +.| ++++|.|+.|.|.+|++|+|..+.|++|.+|..+...|+.+++.++|||+|+.+.
T Consensus 1 msvvG~D~Gn~nc~iavA--r~~--gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~ 76 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVA--RQG--GIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFS 76 (727)
T ss_pred CCceeeeccccceeeeee--ccC--CceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccC
Confidence 459999999999999999 555 7999999999999999999999999999999999999999999999999999766
Q ss_pred hhHhhHhhcCCCceEEECCCCceEEEeC--CC-ceecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHH
Q 002363 104 QVKHLIDSLYLPFNVVEDSRGAVSFKID--EN-NNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGL 180 (930)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al 180 (930)
+........++||.++...+|.+++.+. +. ..|++++|+||+|.+|+..|+..+..++.+|||+||+||++.||+++
T Consensus 77 dP~~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRrav 156 (727)
T KOG0103|consen 77 DPEVQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAV 156 (727)
T ss_pred ChHhhhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHH
Confidence 6555556668999999999998888875 32 68999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeeEEechhhHHHHHhccccC-C---CCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEE
Q 002363 181 MQAAELAGMNVLSLVNEHSGAALQYGIDKD-F---SNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKD 256 (930)
Q Consensus 181 ~~Aa~~AGl~~l~Li~EptAAAl~y~~~~~-~---~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~ 256 (930)
++||++|||++++||||.||+||+||+++. + ..++++|+|+|||++++.+|++.|. .|++.+++
T Consensus 157 ldAA~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~------------kG~lkvl~ 224 (727)
T KOG0103|consen 157 LDAARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFT------------KGKLKVLA 224 (727)
T ss_pred HhHHhhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeec------------cCcceeee
Confidence 999999999999999999999999999873 3 3568999999999999999999986 78999999
Q ss_pred ecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCCcccEEEeecccCcccEEEecH
Q 002363 257 VRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITR 336 (930)
Q Consensus 257 ~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~ItR 336 (930)
+.+|..+||++||..|.+||+.+|+.+ |++|++.+++++.||+.+||++|+.||+|+..+++|+|+|++.|.+..|+|
T Consensus 225 ta~D~~lGgr~fDe~L~~hfa~efk~k--ykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~R 302 (727)
T KOG0103|consen 225 TAFDRKLGGRDFDEALIDHFAKEFKTK--YKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKR 302 (727)
T ss_pred eecccccccchHHHHHHHHHHHHhccc--cccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccH
Confidence 999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhh
Q 002363 337 QKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAAN 416 (930)
Q Consensus 337 ~efe~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ 416 (930)
++||+||.++++|+..++.++|+++++..+||+.|++|||+||||.|++.|.++||. .+++++|.|||||+||||+||+
T Consensus 303 eEfEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgk-e~s~TlN~dEavarG~ALqcAI 381 (727)
T KOG0103|consen 303 EEFEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGK-ELSRTLNQDEAVARGAALQCAI 381 (727)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCC-cccccccHHHHHHHhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999996 8899999999999999999999
Q ss_pred hcCCccccCceeEEeecccceeeeecCCcccCCCCceeEEEeCCCCCCcceeEeeeecccEEEEEEeecCCCCCCCCCCC
Q 002363 417 LSDGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAKDFEVSLAYESEDLLPPGATSP 496 (930)
Q Consensus 417 ls~~~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~~i~~~y~~~~~~~~~~~~~ 496 (930)
||+.||+ |.|.+.|+.||+|.+.|.+... +......+||+|.++|..|.++|++.++|++.+.|.+...+|. +..
T Consensus 382 lSP~frV-Ref~v~Di~pysIs~~w~~~~e--d~~~~~evF~~~~~~p~~K~lT~~Rk~~F~lea~yt~~~~lp~--~~~ 456 (727)
T KOG0103|consen 382 LSPTFRV-REFSVEDIVPYSISLRWVKQGE--DGGSVTEVFPKGHPSPSVKLLTFNRKGPFTLEAKYTKVNKLPY--PKP 456 (727)
T ss_pred cCccccc-eecceecccceeEEEEeccccc--cCCCceeeecCCCCCCCceEEEEEecCceEEEEEeccccccCC--CCC
Confidence 9999999 9999999999999999987532 2233358999999999999999999999999999998888883 678
Q ss_pred ceeEEEEcCCccchhhhccCCCCCCceeEEEEEEccCcceEEeeeeeEEEEEEeeecCccccccccccCCCCCCchhhhh
Q 002363 497 VFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAETAA 576 (930)
Q Consensus 497 ~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~a~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (930)
.|++|.+.++..... | +. .+++|.++++.+|++.|.+|.++.+.... ++|.... +..
T Consensus 457 kI~~~~i~~v~~~~~-----g-e~-skVKvkvr~n~~Gi~~i~sA~~~e~~~ve-ev~~~~~--e~~------------- 513 (727)
T KOG0103|consen 457 KIEKWTITGVTPSED-----G-EF-SKVKVKVRLNEHGIDTIESATLIEDIEVE-EVPEEPM--EYD------------- 513 (727)
T ss_pred ceeeEEecccccCcc-----c-cc-cceeEEEEEcCccceeeecceeecccchh-ccccchh--hhh-------------
Confidence 999999999876532 2 22 38999999999999999999977543211 1211100 000
Q ss_pred hccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCchhhhhhhccccceeeeeeEEEeeccCCCCCCCHHHHHHHH
Q 002363 577 QNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDAE 656 (930)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~l~~~~~~~~~~~~ls~~~l~~~~ 656 (930)
... .. .......+.|.+.+...+|+... + .+.|+..+++..+
T Consensus 514 -------~~~-------------------------~~-~~~~~~~~~k~kvk~~~L~~~~~--~---~~~l~~~~l~~~~ 555 (727)
T KOG0103|consen 514 -------DAA-------------------------KM-LERIAPAENKKKVKKVDLPIEAY--T---KGALITDELELYI 555 (727)
T ss_pred -------cch-------------------------hh-hhhhccccccceeeeccccceee--e---ccccCHHHHHHHH
Confidence 000 00 00000011122333334444432 2 2358999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhhccCcccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 002363 657 AKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLD 736 (930)
Q Consensus 657 ~~l~~~~~~D~~~~~~~eakN~LEs~iY~~r~~l~~~~~~~~~~~~~er~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~ 736 (930)
+++.+|..+|+...++.++||.||+|||+||++|.+. |..|+++++|+.|...|+++++|||++|+|.++..|..||.
T Consensus 556 e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~--y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~ 633 (727)
T KOG0103|consen 556 EKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDK--YEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLE 633 (727)
T ss_pred HHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhhh--hhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHH
Confidence 9999999999999999999999999999999999974 99999999999999999999999999999999999999999
Q ss_pred HHHhccchHHHhHHhhhcchHHHHHHHHHHHHHHHHHhccccCCCCCChhhhHHHHHhHHHHHHHHHHHHHHhhcCCCCC
Q 002363 737 VLKAIGDPVFFRFKELTARPASVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSWLDEKENDQKKTSGFS 816 (930)
Q Consensus 737 ~L~~~~~pi~~R~~e~~~rp~ai~~l~~~l~~~~~~~~~~~~~~~~it~~e~~~l~~~~~~~~~Wl~~~~~~Q~~~~~~~ 816 (930)
+|+.+++ ..|+.+.+.||+++..+.+.|+.++..+.+ ++..+...|++.+.|++.++.+|.+++++.
T Consensus 634 elk~~g~--~~r~~e~~~r~k~~d~~~~~i~~~r~~~~~-----------~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~ 700 (727)
T KOG0103|consen 634 ELKKLGD--KKRFDENEERPKAFDELGKKIQEIRKAIES-----------EMEKVLLEIEEAEKWLERKSNKQNKLSKTA 700 (727)
T ss_pred HHHhhhh--hhhhhhhhhhhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhhhhhhcccCCC
Confidence 9999999 899999999999999999999999999876 688999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHHHhhhcCCC
Q 002363 817 KPAFTSEEVYEKILKLQDKINSINRIPK 844 (930)
Q Consensus 817 dP~~~~~di~~k~~~l~~~~~~l~~kpk 844 (930)
+| +.+++++.+.+.|.+.|..+.++||
T Consensus 701 ~p-v~~~e~~~~~~~l~~~~~~i~~~~k 727 (727)
T KOG0103|consen 701 DP-VPSSEIESEAKELNNTCSDIISKPK 727 (727)
T ss_pred CC-CchHHHHHhhhhhccccccccccCC
Confidence 99 9999999999999999999999886
No 4
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=1.7e-97 Score=893.34 Aligned_cols=603 Identities=28% Similarity=0.509 Sum_probs=535.2
Q ss_pred CCccEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEeCCcEEEcHhHHhhHhhCccchHhHhhhhhCCC
Q 002363 22 SQSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKP 101 (930)
Q Consensus 22 ~~~~vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~ 101 (930)
..+.+||||||||||+||++ .+| +++|+.|..|+|++||+|+|.+++++||..|..++.++|.++++++|||||+.
T Consensus 2 ~~~~~iGIDlGTt~s~va~~--~~g--~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~ 77 (653)
T PTZ00009 2 TKGPAIGIDLGTTYSCVGVW--KNE--NVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRK 77 (653)
T ss_pred CcccEEEEEeCcccEEEEEE--eCC--ceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCC
Confidence 45679999999999999999 665 68999999999999999999999999999999999999999999999999996
Q ss_pred chhhHhhHhhcCCCceEEECCCCceEEEe--CC-CceecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHH
Q 002363 102 FKQVKHLIDSLYLPFNVVEDSRGAVSFKI--DE-NNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERK 178 (930)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~ 178 (930)
+.+.........+||.++.+.++...+.+ .+ +..++|++|++++|++|++.|+.+++.++.++|||||+||++.||+
T Consensus 78 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~ 157 (653)
T PTZ00009 78 FDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQ 157 (653)
T ss_pred CCchhHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHH
Confidence 65433333345689999887777665554 33 2689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEec
Q 002363 179 GLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVR 258 (930)
Q Consensus 179 al~~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~ 258 (930)
++++||++|||++++||+||+|||++|++.+.. ..+.++|||||||||||+||+++. .+.++|+++.
T Consensus 158 a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~-~~~~~vlv~D~GggT~dvsv~~~~------------~~~~~v~a~~ 224 (653)
T PTZ00009 158 ATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKG-DGEKNVLIFDLGGGTFDVSLLTIE------------DGIFEVKATA 224 (653)
T ss_pred HHHHHHHHcCCceeEEecchHHHHHHHhhhccC-CCCCEEEEEECCCCeEEEEEEEEe------------CCeEEEEEec
Confidence 999999999999999999999999999987532 235789999999999999999875 6789999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhhcCC-CCCCCCcHHHHHHHHHHHHHHhhhhcCCCcccEEEeecccCcccEEEecHH
Q 002363 259 WDAELGGQNMELRLVEYFADEFNKQVGN-GVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQ 337 (930)
Q Consensus 259 ~d~~lGG~~~D~~L~~~l~~~f~~~~~~-~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~ItR~ 337 (930)
|+..|||++||.+|++|+.++|..+ + +.++..+++++.+|+.+||++|+.||.+.++.+.|++++++.++.++|||+
T Consensus 225 gd~~lGG~d~D~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~ 302 (653)
T PTZ00009 225 GDTHLGGEDFDNRLVEFCVQDFKRK--NRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRA 302 (653)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHh--ccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHH
Confidence 9999999999999999999999877 4 467778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhh
Q 002363 338 KFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANL 417 (930)
Q Consensus 338 efe~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~l 417 (930)
+||++|+++++++..+|+++|+.++++..+|+.|+||||+||||+|+++|+++|+...+..++|||+|||+|||++|+++
T Consensus 303 ~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~l 382 (653)
T PTZ00009 303 RFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAIL 382 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHh
Confidence 99999999999999999999999999999999999999999999999999999987678899999999999999999999
Q ss_pred cCC--ccccCceeEEeecccceeeeecCCcccCCCCceeEEEeCCCCCCcceeEeeeec----ccEEEEEEeecCCCCCC
Q 002363 418 SDG--IKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHA----KDFEVSLAYESEDLLPP 491 (930)
Q Consensus 418 s~~--~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~----~~~~i~~~y~~~~~~~~ 491 (930)
++. +++ +++.+.|++||+||++..++.+ .+|||+|++||++++++|++. ..|.|.| |+|++.++.
T Consensus 383 s~~~~~~~-~~~~~~dv~p~slgi~~~~~~~-------~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i-~ege~~~~~ 453 (653)
T PTZ00009 383 TGEQSSQV-QDLLLLDVTPLSLGLETAGGVM-------TKLIERNTTIPTKKSQIFTTYADNQPGVLIQV-FEGERAMTK 453 (653)
T ss_pred cCCccccc-cceEEEeecccccCccccCCce-------EEEEeCCCcCCccceeEeEeecCCCceEEEEE-EecccccCC
Confidence 985 788 8999999999999998766543 389999999999999999754 3589999 899887765
Q ss_pred CCCCCceeEEEEcCCccchhhhccCCCCCCceeEEEEEEccCcceEEeeeeeEEEEEEeeecCccccccccccCCCCCCc
Q 002363 492 GATSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNIS 571 (930)
Q Consensus 492 ~~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~a~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (930)
++..||+|.|.++++.+. | .+ +|+|+|++|.+|+|+|...+. .
T Consensus 454 --~n~~lg~~~i~~i~~~~~-----g--~~-~i~v~f~id~~Gil~v~~~~~-----------------------~---- 496 (653)
T PTZ00009 454 --DNNLLGKFHLDGIPPAPR-----G--VP-QIEVTFDIDANGILNVSAEDK-----------------------S---- 496 (653)
T ss_pred --CCceEEEEEEcCCCCCCC-----C--Cc-eEEEEEEECCCCeEEEEEecc-----------------------c----
Confidence 578999999999987652 2 34 799999999999998864310 0
Q ss_pred hhhhhhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCchhhhhhhccccceeeeeeEEEeeccCCCCCCCHHH
Q 002363 572 AETAAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEA 651 (930)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~l~~~~~~~~~~~~ls~~~ 651 (930)
+ . +. .++.+.. ...+|+.++
T Consensus 497 ----t-------------------------------------~-----------~~----~~~~i~~----~~~~ls~~~ 516 (653)
T PTZ00009 497 ----T-------------------------------------G-----------KS----NKITITN----DKGRLSKAD 516 (653)
T ss_pred ----C-------------------------------------C-----------ce----eeEEEee----ccccccHHH
Confidence 0 0 00 1233331 123699999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhhccCcccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCCHHHH
Q 002363 652 LVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEF 731 (930)
Q Consensus 652 l~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iY~~r~~l~~~~~~~~~~~~~er~~l~~~l~e~~~WL~~~g~~a~~~~~ 731 (930)
++++++.+.+|...|+.++++.++||.||+|||++|++|++++ |..++++++|++|.+.|+++++|||+ +++++.++|
T Consensus 517 i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~-~~~~~t~ee~~~l~~~l~~~~~wL~~-~~~~~~~~~ 594 (653)
T PTZ00009 517 IDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEK-VKGKLSDSDKATIEKAIDEALEWLEK-NQLAEKEEF 594 (653)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhh-hhccCCHHHHHHHHHHHHHHHHHHhc-CCchhHHHH
Confidence 9999999999999999999999999999999999999997655 99999999999999999999999995 589999999
Q ss_pred HHHHHHHHhccchHHHhHHh
Q 002363 732 QERLDVLKAIGDPVFFRFKE 751 (930)
Q Consensus 732 ~~kl~~L~~~~~pi~~R~~e 751 (930)
++|+++|+++++||..|+..
T Consensus 595 ~~kl~eL~~~~~pi~~r~~~ 614 (653)
T PTZ00009 595 EHKQKEVESVCNPIMTKMYQ 614 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999753
No 5
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.8e-96 Score=880.36 Aligned_cols=612 Identities=24% Similarity=0.444 Sum_probs=541.6
Q ss_pred ccEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEe-CCcEEEcHhHHhhHhhCccchHhHhhhhhCCCc
Q 002363 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFH-ESTRLLGEEASGIIARYPHRVYSQLRDMIGKPF 102 (930)
Q Consensus 24 ~~vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~-~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~ 102 (930)
+.|||||||||||+||++ .+| .+.++.|..|+|.+||+|+|. ++++++|..|..++..+|.++++++|||||+++
T Consensus 2 ~~viGIDlGTt~s~va~~--~~g--~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~ 77 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVM--EGG--KPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRY 77 (668)
T ss_pred CcEEEEEeCCCcEEEEEE--ECC--eEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCc
Confidence 359999999999999999 666 346778999999999999997 578999999999999999999999999999987
Q ss_pred hhhHhhHhhcCCCceEEECCCCceEEEeCC-CceecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHH
Q 002363 103 KQVKHLIDSLYLPFNVVEDSRGAVSFKIDE-NNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLM 181 (930)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~ 181 (930)
.++... ...+||.+..+.+|.+.+.+.. +..++|++|++++|++|++.|+.++|.++.++|||||+||++.||++++
T Consensus 78 ~~~~~~--~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~ 155 (668)
T PRK13410 78 DELDPE--SKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATR 155 (668)
T ss_pred hhhHHh--hccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHH
Confidence 765543 4578999999888988888753 4789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCC
Q 002363 182 QAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDA 261 (930)
Q Consensus 182 ~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~ 261 (930)
+||++|||++++||+||+||||+|++.+ ..+.++|||||||||||+||+++. .+.++|+++.|+.
T Consensus 156 ~Aa~~AGl~v~~li~EPtAAAlayg~~~---~~~~~vlV~DlGgGT~Dvsv~~~~------------~g~~~V~at~gd~ 220 (668)
T PRK13410 156 DAGRIAGLEVERILNEPTAAALAYGLDR---SSSQTVLVFDLGGGTFDVSLLEVG------------NGVFEVKATSGDT 220 (668)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhcccc---CCCCEEEEEECCCCeEEEEEEEEc------------CCeEEEEEeecCC
Confidence 9999999999999999999999999875 245899999999999999999874 6789999999999
Q ss_pred CcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCCcccEEEeecccC----cccEEEecHH
Q 002363 262 ELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVD----IDFRSSITRQ 337 (930)
Q Consensus 262 ~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~i~ie~l~~~----~d~~~~ItR~ 337 (930)
+|||.+||.+|++||..+|..+ ++.++..+++++.+|+.+||++|+.||.+..+.++++.++.+ .++.+.|||+
T Consensus 221 ~lGG~dfD~~l~~~l~~~f~~~--~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~ 298 (668)
T PRK13410 221 QLGGNDFDKRIVDWLAEQFLEK--EGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRK 298 (668)
T ss_pred CCChhHHHHHHHHHHHHHHHhh--hCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHH
Confidence 9999999999999999999988 778888899999999999999999999999999999988753 4788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhh
Q 002363 338 KFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANL 417 (930)
Q Consensus 338 efe~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~l 417 (930)
+||++|+++++++..+|+++|+.+++++.+|+.|+||||+||||+|++.|+++||. .+..++|||+|||+|||++|+++
T Consensus 299 ~FE~l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~-~~~~~~npdeaVA~GAAi~aa~l 377 (668)
T PRK13410 299 QFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPR-EPNQNVNPDEVVAVGAAIQAGIL 377 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCC-CcccCCCCchHHHHhHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999985 67889999999999999999999
Q ss_pred cCCccccCceeEEeecccceeeeecCCcccCCCCceeEEEeCCCCCCcceeEeeeec----ccEEEEEEeecCCCCCCCC
Q 002363 418 SDGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHA----KDFEVSLAYESEDLLPPGA 493 (930)
Q Consensus 418 s~~~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~----~~~~i~~~y~~~~~~~~~~ 493 (930)
++. + +++.+.|++||+||+++.++.+ .+|||+|++||++++.+|.+. ..+.|.+ |+|++.+..
T Consensus 378 s~~--~-~~~~l~Dv~p~slgie~~~g~~-------~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v-~qGe~~~~~-- 444 (668)
T PRK13410 378 AGE--L-KDLLLLDVTPLSLGLETIGGVM-------KKLIPRNTTIPVRRSDVFSTSENNQSSVEIHV-WQGEREMAS-- 444 (668)
T ss_pred ccc--c-cceeEEeeccccccceecCCee-------EEEEeCCCcccccccccceeccCCCcEEEEEE-Eeecccccc--
Confidence 985 4 7899999999999999877654 389999999999999999764 3588888 999887765
Q ss_pred CCCceeEEEEcCCccchhhhccCCCCCCceeEEEEEEccCcceEEeeeeeEEEEEEeeecCccccccccccCCCCCCchh
Q 002363 494 TSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAE 573 (930)
Q Consensus 494 ~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~a~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (930)
+|..||+|.|.|+++++. | .+ +|+|+|++|.||+|+|...+..
T Consensus 445 ~n~~lg~~~l~~i~~~~~-----g--~~-~I~v~f~id~nGiL~V~a~d~~----------------------------- 487 (668)
T PRK13410 445 DNKSLGRFKLSGIPPAPR-----G--VP-QVQVAFDIDANGILQVSATDRT----------------------------- 487 (668)
T ss_pred CCceEEEEEEeCCCCCCC-----C--CC-eEEEEEEECCCcEEEEEEEEcC-----------------------------
Confidence 588999999999998752 3 45 8999999999999988653200
Q ss_pred hhhhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCchhhhhhhccccceeeeeeEEEeeccCCCCCCCHHHHH
Q 002363 574 TAAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALV 653 (930)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~l~~~~~~~~~~~~ls~~~l~ 653 (930)
+ . ++ ..+.+.. ..+|+.++++
T Consensus 488 --t-------------------------------------g-----------~~----~~~~i~~-----~~~ls~~ei~ 508 (668)
T PRK13410 488 --T-------------------------------------G-----------RE----QSVTIQG-----ASTLSEQEVN 508 (668)
T ss_pred --C-------------------------------------C-----------ce----eeeeecc-----cccCCHHHHH
Confidence 0 0 00 0222321 2369999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhhccC-cccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHH
Q 002363 654 DAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFET-SEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQ 732 (930)
Q Consensus 654 ~~~~~l~~~~~~D~~~~~~~eakN~LEs~iY~~r~~l~~-~~~~~~~~~~~er~~l~~~l~e~~~WL~~~g~~a~~~~~~ 732 (930)
++.+++.+|...|+.++++.++||.||+|||++|++|.+ ...|..++++++|+.|..+|+++++|||+++.+...+.|.
T Consensus 509 ~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~ 588 (668)
T PRK13410 509 RMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVA 588 (668)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999975 2238899999999999999999999999998889999999
Q ss_pred HHHHHHHhccchHHHhHHhhhcchHHHHHHHHHHHHHH
Q 002363 733 ERLDVLKAIGDPVFFRFKELTARPASVEHAQKYLGQLQ 770 (930)
Q Consensus 733 ~kl~~L~~~~~pi~~R~~e~~~rp~ai~~l~~~l~~~~ 770 (930)
++++.|+.++.||..|+.| .-..-++.+++.+...+
T Consensus 589 ~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 624 (668)
T PRK13410 589 DLQEALYGLNREVRAEYKE--EDEGPLQGIKNTFGSLK 624 (668)
T ss_pred HHHHHHHHHHHHHHHHHhh--cccchhhhHHhhccccc
Confidence 9999999999999999999 33334555666655433
No 6
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=9.5e-95 Score=868.63 Aligned_cols=589 Identities=23% Similarity=0.439 Sum_probs=525.9
Q ss_pred CCccEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEe-CCcEEEcHhHHhhHhhCccchHhHhhhhhCC
Q 002363 22 SQSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFH-ESTRLLGEEASGIIARYPHRVYSQLRDMIGK 100 (930)
Q Consensus 22 ~~~~vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~-~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~ 100 (930)
..+.+||||||||||+||++ .+| +++|+.|..|+|.+||+|+|. ++++++|..|..++.++|.++++++|||||+
T Consensus 39 ~~~~viGIDlGTt~s~va~~--~~~--~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~ 114 (663)
T PTZ00400 39 ATGDIVGIDLGTTNSCVAIM--EGS--QPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGR 114 (663)
T ss_pred hcCcEEEEEECcccEEEEEE--eCC--eeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCC
Confidence 34579999999999999998 544 689999999999999999997 4689999999999999999999999999999
Q ss_pred CchhhHhhHhhcCCCceEEECCCCceEEEeCCCceecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHH
Q 002363 101 PFKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGL 180 (930)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al 180 (930)
++.+.........+||.++.+.++.+.+.+. +..++|++|++++|++|++.|+.+++.++.++|||||+||++.||+++
T Consensus 115 ~~~d~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~ 193 (663)
T PTZ00400 115 RYDEDATKKEQKILPYKIVRASNGDAWIEAQ-GKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQAT 193 (663)
T ss_pred CcCcHHHHhhhccCCeEEEecCCCceEEEEC-CEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHH
Confidence 7654443444557999999988898888885 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCC
Q 002363 181 MQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWD 260 (930)
Q Consensus 181 ~~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d 260 (930)
++||++|||++++||+||+|||++|+... ..++++|||||||||||+||+++. .+.++|++++|+
T Consensus 194 ~~Aa~~AGl~v~~li~EptAAAlay~~~~---~~~~~vlV~DlGgGT~DvSv~~~~------------~g~~~v~a~~gd 258 (663)
T PTZ00400 194 KDAGKIAGLDVLRIINEPTAAALAFGMDK---NDGKTIAVYDLGGGTFDISILEIL------------GGVFEVKATNGN 258 (663)
T ss_pred HHHHHHcCCceEEEeCchHHHHHHhcccc---CCCcEEEEEeCCCCeEEEEEEEec------------CCeeEEEecccC
Confidence 99999999999999999999999999865 346899999999999999999774 678999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCCcccEEEeecccC----cccEEEecH
Q 002363 261 AELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVD----IDFRSSITR 336 (930)
Q Consensus 261 ~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~i~ie~l~~~----~d~~~~ItR 336 (930)
..+||++||..|++||.++|..+ ++.++..+++++.+|+.+||++|+.||.+.++.+.++.++.+ .+|.+.|||
T Consensus 259 ~~LGG~d~D~~l~~~l~~~f~~~--~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR 336 (663)
T PTZ00400 259 TSLGGEDFDQRILNYLIAEFKKQ--QGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSR 336 (663)
T ss_pred CCcCHHHHHHHHHHHHHHHhhhh--cCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECH
Confidence 99999999999999999999988 778888899999999999999999999999999999987654 478999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhh
Q 002363 337 QKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAAN 416 (930)
Q Consensus 337 ~efe~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ 416 (930)
++|+++|++++.++..+|.++|+++++.+.+|+.|+||||+||+|+|++.|+++||. .+..++|||+|||+|||++|++
T Consensus 337 ~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~-~~~~~~npdeaVA~GAAi~aa~ 415 (663)
T PTZ00400 337 AKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGK-EPSKGVNPDEAVAMGAAIQAGV 415 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCC-CcccCCCCccceeeccHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999996 6788999999999999999999
Q ss_pred hcCCccccCceeEEeecccceeeeecCCcccCCCCceeEEEeCCCCCCcceeEeeeecc----cEEEEEEeecCCCCCCC
Q 002363 417 LSDGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLPPG 492 (930)
Q Consensus 417 ls~~~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~----~~~i~~~y~~~~~~~~~ 492 (930)
+++. + +++.+.|++||+||+++.++.+ .+|||+|++||++++.+|.+.. .+.|.| |+|++.++.
T Consensus 416 l~~~--~-~~~~~~dv~p~slgi~~~~g~~-------~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i-~ege~~~~~- 483 (663)
T PTZ00400 416 LKGE--I-KDLLLLDVTPLSLGIETLGGVF-------TRLINRNTTIPTKKSQVFSTAADNQTQVGIKV-FQGEREMAA- 483 (663)
T ss_pred hcCC--c-cceEEEeccccceEEEecCCee-------EEEEecCccCCccceeeeeeccCCCceEEEEE-EEecCccCC-
Confidence 9985 3 7899999999999999887654 3899999999999999998753 488888 899988776
Q ss_pred CCCCceeEEEEcCCccchhhhccCCCCCCceeEEEEEEccCcceEEeeeeeEEEEEEeeecCccccccccccCCCCCCch
Q 002363 493 ATSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISA 572 (930)
Q Consensus 493 ~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~a~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (930)
.+..||+|.|.|+++.+. | .+ +|+|+|.+|.+|+|+|...+.. .
T Consensus 484 -~n~~lg~~~i~~i~~~~~-----g--~~-~i~v~f~id~~Gil~v~a~~~~----------------------~----- 527 (663)
T PTZ00400 484 -DNKLLGQFDLVGIPPAPR-----G--VP-QIEVTFDVDANGIMNISAVDKS----------------------T----- 527 (663)
T ss_pred -cCceeEEEEEcCCCCCCC-----C--Cc-eEEEEEEECCCCCEEEEEEecc----------------------C-----
Confidence 578999999999987652 2 34 8999999999999987643200 0
Q ss_pred hhhhhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCchhhhhhhccccceeeeeeEEEeeccCCCCCCCHHHH
Q 002363 573 ETAAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEAL 652 (930)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~l~~~~~~~~~~~~ls~~~l 652 (930)
.+ +.+++++. ..+|+.+++
T Consensus 528 ----------------------------------------------------~~----~~~~~i~~-----~~~ls~~ei 546 (663)
T PTZ00400 528 ----------------------------------------------------GK----KQEITIQS-----SGGLSDEEI 546 (663)
T ss_pred ----------------------------------------------------Cc----EEEEEeec-----cccccHHHH
Confidence 00 01334431 236999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhhccCcccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHH
Q 002363 653 VDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQ 732 (930)
Q Consensus 653 ~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iY~~r~~l~~~~~~~~~~~~~er~~l~~~l~e~~~WL~~~g~~a~~~~~~ 732 (930)
+++++++.+|..+|+.++++.++||.||+|||++|++|.+ |..++++++|+.+.+.|+++++|||++ +.++|+
T Consensus 547 ~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e---~~~~~s~~ere~i~~~l~~~~~WL~~~----d~~~i~ 619 (663)
T PTZ00400 547 EKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSD---LKDKISDADKDELKQKITKLRSTLSSE----DVDSIK 619 (663)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHHH
Confidence 9999999999999999999999999999999999999963 888999999999999999999999976 578999
Q ss_pred HHHHHHHhccchHHHhH
Q 002363 733 ERLDVLKAIGDPVFFRF 749 (930)
Q Consensus 733 ~kl~~L~~~~~pi~~R~ 749 (930)
+++++|++++.++..++
T Consensus 620 ~k~~eL~~~l~~l~~k~ 636 (663)
T PTZ00400 620 DKTKQLQEASWKISQQA 636 (663)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998743
No 7
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.6e-94 Score=866.41 Aligned_cols=589 Identities=24% Similarity=0.441 Sum_probs=526.3
Q ss_pred cEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEeC-CcEEEcHhHHhhHhhCccchHhHhhhhhCCCch
Q 002363 25 AVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHE-STRLLGEEASGIIARYPHRVYSQLRDMIGKPFK 103 (930)
Q Consensus 25 ~vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~ 103 (930)
.+||||||||||+||++ .+| . +.++.|..|+|.+||+|+|.+ +++++|..|..++.++|.++++++|||||+.+.
T Consensus 3 ~viGIDlGTt~s~va~~--~~g-~-~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~ 78 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVL--EGG-K-PIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWD 78 (653)
T ss_pred cEEEEEeCcccEEEEEE--ECC-E-EEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCcc
Confidence 59999999999999999 777 3 469999999999999999975 689999999999999999999999999999876
Q ss_pred hhHhhHhhcCCCceEEECCCCceEEEeCCCceecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHHHH
Q 002363 104 QVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA 183 (930)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~A 183 (930)
+... ....+||.++...++.+.+.+. +..++|++|++++|++|++.|+.++|.++.++|||||+||++.||+++++|
T Consensus 79 d~~~--~~~~~~~~~v~~~~~~~~~~i~-~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 155 (653)
T PRK13411 79 DTEE--ERSRVPYTCVKGRDDTVNVQIR-GRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDA 155 (653)
T ss_pred chhH--HhhcCCceEEecCCCceEEEEC-CEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHH
Confidence 6543 3457899999888888888886 478999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCCc
Q 002363 184 AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAEL 263 (930)
Q Consensus 184 a~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~l 263 (930)
|++|||++++||+||+|||++|++.+. ..+.++|||||||||||+||+++. .+.++|++++|+.+|
T Consensus 156 a~~AGl~v~~li~EPtAAAl~y~~~~~--~~~~~vlV~DlGgGT~dvsi~~~~------------~~~~~V~at~gd~~L 221 (653)
T PRK13411 156 GTIAGLEVLRIINEPTAAALAYGLDKQ--DQEQLILVFDLGGGTFDVSILQLG------------DGVFEVKATAGNNHL 221 (653)
T ss_pred HHHcCCCeEEEecchHHHHHHhccccc--CCCCEEEEEEcCCCeEEEEEEEEe------------CCEEEEEEEecCCCc
Confidence 999999999999999999999998652 345789999999999999999874 678999999999999
Q ss_pred chHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCCcccEEEeecccC----cccEEEecHHHH
Q 002363 264 GGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVD----IDFRSSITRQKF 339 (930)
Q Consensus 264 GG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~i~ie~l~~~----~d~~~~ItR~ef 339 (930)
||++||.+|++||.++|..+ ++.++..+++++.+|+.+||++|+.||.+..+.+++++++.+ .++.+.|||++|
T Consensus 222 GG~dfD~~l~~~l~~~f~~~--~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~f 299 (653)
T PRK13411 222 GGDDFDNCIVDWLVENFQQQ--EGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKF 299 (653)
T ss_pred CHHHHHHHHHHHHHHHHHHh--hCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHH
Confidence 99999999999999999988 778888899999999999999999999999999999987643 578999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhhcC
Q 002363 340 EELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSD 419 (930)
Q Consensus 340 e~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls~ 419 (930)
+++|+++++++..+|+++|+++++..++|+.|+||||+||+|+|++.|+++||...+..++|||+|||+|||++|+++++
T Consensus 300 e~l~~~l~~~~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~ 379 (653)
T PRK13411 300 EELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGG 379 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999998777889999999999999999999998
Q ss_pred CccccCceeEEeecccceeeeecCCcccCCCCceeEEEeCCCCCCcceeEeeeecc----cEEEEEEeecCCCCCCCCCC
Q 002363 420 GIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLPPGATS 495 (930)
Q Consensus 420 ~~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~----~~~i~~~y~~~~~~~~~~~~ 495 (930)
. + +++.+.|++||+||+++.++.+ .+|||+|++||++++.+|.+.. .+.|.+ |+|++.++. .+
T Consensus 380 ~--~-~~~~~~dv~p~slgi~~~~~~~-------~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v-~~ge~~~~~--~n 446 (653)
T PRK13411 380 E--V-KDLLLLDVTPLSLGIETLGEVF-------TKIIERNTTIPTSKSQVFSTATDGQTSVEIHV-LQGERAMAK--DN 446 (653)
T ss_pred C--c-cceeeeecccceeeEEecCCce-------EEEEECCCcccceeeEEEEeccCCCeEEEEEE-EEecCcccc--cC
Confidence 6 4 7899999999999999877654 3899999999999999998743 488888 999987766 57
Q ss_pred CceeEEEEcCCccchhhhccCCCCCCceeEEEEEEccCcceEEeeeeeEEEEEEeeecCccccccccccCCCCCCchhhh
Q 002363 496 PVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAETA 575 (930)
Q Consensus 496 ~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~a~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (930)
..||.|.|.|+++++. | .+ +|+|+|++|.+|+|+|...+.-
T Consensus 447 ~~lg~~~l~~i~~~~~-----g--~~-~i~v~f~id~~Gil~v~a~d~~------------------------------- 487 (653)
T PRK13411 447 KSLGKFLLTGIPPAPR-----G--VP-QIEVSFEIDVNGILKVSAQDQG------------------------------- 487 (653)
T ss_pred ceeeEEEEcCCCCCCC-----C--Cc-cEEEEEEECCCCeEEEEEeecc-------------------------------
Confidence 8999999999987652 2 44 7999999999999987643200
Q ss_pred hhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCchhhhhhhccccceeeeeeEEEeeccCCCCCCCHHHHHHH
Q 002363 576 AQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDA 655 (930)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~l~~~~~~~~~~~~ls~~~l~~~ 655 (930)
+ . ++ ..+.+.. ..+||.++++++
T Consensus 488 t---------------------------------------------~---~~----~~~~i~~-----~~~ls~~ei~~~ 510 (653)
T PRK13411 488 T---------------------------------------------G---RE----QSIRITN-----TGGLSSNEIERM 510 (653)
T ss_pred C---------------------------------------------C---ce----EeeEEec-----cccchHHHHHHH
Confidence 0 0 00 1233321 235999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhhccCcccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 002363 656 EAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERL 735 (930)
Q Consensus 656 ~~~l~~~~~~D~~~~~~~eakN~LEs~iY~~r~~l~~~~~~~~~~~~~er~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl 735 (930)
++++.+|...|+.++++.++||.||+|||++|++|++ +..++++++|+.+.+.|++.++|||++ +++.++|++++
T Consensus 511 ~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~---~~~~~~~~er~~i~~~l~~~~~wL~~~--~~~~~~~~~~~ 585 (653)
T PRK13411 511 RQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKE---NGELISEELKQRAEQKVEQLEAALTDP--NISLEELKQQL 585 (653)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 9999999999999999999999999999999999973 678999999999999999999999973 57899999999
Q ss_pred HHHHhccchHHHhHH
Q 002363 736 DVLKAIGDPVFFRFK 750 (930)
Q Consensus 736 ~~L~~~~~pi~~R~~ 750 (930)
++|++.+.|+..++.
T Consensus 586 ~el~~~~~~i~~~~y 600 (653)
T PRK13411 586 EEFQQALLAIGAEVY 600 (653)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998664
No 8
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=8.1e-93 Score=853.22 Aligned_cols=586 Identities=26% Similarity=0.467 Sum_probs=524.9
Q ss_pred cEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEe-CCcEEEcHhHHhhHhhCccchHhHhhhhhCCCch
Q 002363 25 AVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFH-ESTRLLGEEASGIIARYPHRVYSQLRDMIGKPFK 103 (930)
Q Consensus 25 ~vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~-~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~ 103 (930)
.+||||||||||+||++ .+| .++++.|..|+|.+||+|+|. ++++++|..|..++.++|.++++++|||||++++
T Consensus 3 ~viGIDlGTt~s~va~~--~~g--~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~ 78 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVM--EGG--EPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRRDE 78 (627)
T ss_pred cEEEEEeCcccEEEEEE--ECC--EEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCCch
Confidence 59999999999999999 666 357999999999999999997 6799999999999999999999999999999866
Q ss_pred hhHhhHhhcCCCceEEECCCCceEEEeCCCceecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHHHH
Q 002363 104 QVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA 183 (930)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~A 183 (930)
.++... ..+||.++.+.+|.+.+.+. +..++|++|++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 79 ~~~~~~--~~~p~~~~~~~~~~~~~~~~-~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~A 155 (627)
T PRK00290 79 EVQKDI--KLVPYKIVKADNGDAWVEID-GKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDA 155 (627)
T ss_pred HHHHHh--hcCCeEEEEcCCCceEEEEC-CEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 665543 47999999988888888875 478999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCCc
Q 002363 184 AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAEL 263 (930)
Q Consensus 184 a~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~l 263 (930)
|++|||++++||+||+|||++|++.+. .+.++|||||||||||+||+++. .+.++|+++.|+..+
T Consensus 156 a~~AGl~v~~li~EptAAAl~y~~~~~---~~~~vlV~D~GggT~dvsv~~~~------------~~~~~vla~~gd~~l 220 (627)
T PRK00290 156 GKIAGLEVLRIINEPTAAALAYGLDKK---GDEKILVYDLGGGTFDVSILEIG------------DGVFEVLSTNGDTHL 220 (627)
T ss_pred HHHcCCceEEEecchHHHHHHhhhccC---CCCEEEEEECCCCeEEEEEEEEe------------CCeEEEEEecCCCCc
Confidence 999999999999999999999998762 45899999999999999999874 578999999999999
Q ss_pred chHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCCcccEEEeecccC----cccEEEecHHHH
Q 002363 264 GGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVD----IDFRSSITRQKF 339 (930)
Q Consensus 264 GG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~i~ie~l~~~----~d~~~~ItR~ef 339 (930)
||.+||.+|++|+.++|..+ ++.++..+++++.+|+.+||++|+.||.+..+.++++.++.+ .++.+.|||++|
T Consensus 221 GG~d~D~~l~~~~~~~~~~~--~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~f 298 (627)
T PRK00290 221 GGDDFDQRIIDYLADEFKKE--NGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKF 298 (627)
T ss_pred ChHHHHHHHHHHHHHHHHHh--hCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHH
Confidence 99999999999999999988 778888899999999999999999999999999999988753 678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhhcC
Q 002363 340 EELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSD 419 (930)
Q Consensus 340 e~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls~ 419 (930)
+++|+++++++..+|+++|+.++++..+|+.|+||||+||+|+|++.|+++||. .+..++|||+|||+|||++|+++++
T Consensus 299 e~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~-~~~~~~npdeava~GAa~~aa~l~~ 377 (627)
T PRK00290 299 EELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGK-EPNKGVNPDEVVAIGAAIQGGVLAG 377 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCC-CCCcCcCChHHHHHhHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999986 6788999999999999999999998
Q ss_pred CccccCceeEEeecccceeeeecCCcccCCCCceeEEEeCCCCCCcceeEeeeecc----cEEEEEEeecCCCCCCCCCC
Q 002363 420 GIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLPPGATS 495 (930)
Q Consensus 420 ~~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~----~~~i~~~y~~~~~~~~~~~~ 495 (930)
. + +++.+.|++||+||+++.++.+ .+|||+|+++|++++++|.+.. .+.|.+ |+|++.++. ++
T Consensus 378 ~--~-~~~~~~d~~~~slgi~~~~~~~-------~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v-~~ge~~~~~--~~ 444 (627)
T PRK00290 378 D--V-KDVLLLDVTPLSLGIETLGGVM-------TKLIERNTTIPTKKSQVFSTAADNQPAVTIHV-LQGEREMAA--DN 444 (627)
T ss_pred C--c-cceeeeeccceEEEEEecCCeE-------EEEecCCCcCCccceEEEEecCCCcceEEEEE-EEecccccC--cC
Confidence 4 4 7899999999999999876544 3899999999999999998754 478888 888877665 57
Q ss_pred CceeEEEEcCCccchhhhccCCCCCCceeEEEEEEccCcceEEeeeeeEEEEEEeeecCccccccccccCCCCCCchhhh
Q 002363 496 PVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAETA 575 (930)
Q Consensus 496 ~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~a~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (930)
..||+|.|.++++.+. | .+ +|+|+|++|.+|+|+|...+.. .
T Consensus 445 ~~lg~~~i~~~~~~~~-----g--~~-~i~v~f~~d~~gil~v~a~~~~----------------------~-------- 486 (627)
T PRK00290 445 KSLGRFNLTGIPPAPR-----G--VP-QIEVTFDIDANGIVHVSAKDKG----------------------T-------- 486 (627)
T ss_pred ceEEEEEECCCCCCCC-----C--Cc-eEEEEEEECCCceEEEEEEEcc----------------------C--------
Confidence 8999999999987642 2 34 7999999999999988643200 0
Q ss_pred hhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCchhhhhhhccccceeeeeeEEEeeccCCCCCCCHHHHHHH
Q 002363 576 AQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDA 655 (930)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~l~~~~~~~~~~~~ls~~~l~~~ 655 (930)
. +. ..+++. ...+|+.++++++
T Consensus 487 --------------------~-----------------------------~~----~~~~i~-----~~~~ls~e~i~~~ 508 (627)
T PRK00290 487 --------------------G-----------------------------KE----QSITIT-----ASSGLSDEEIERM 508 (627)
T ss_pred --------------------C-----------------------------ce----eEEEec-----cccccCHHHHHHH
Confidence 0 00 122332 1236999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhhccCcccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 002363 656 EAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERL 735 (930)
Q Consensus 656 ~~~l~~~~~~D~~~~~~~eakN~LEs~iY~~r~~l~~~~~~~~~~~~~er~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl 735 (930)
++++.+|...|+.++++.++||+||+|||.+|++|+ + +..++++++|++|.+.|+++++|||++ +.++|++++
T Consensus 509 ~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~--~-~~~~~~~~e~~~i~~~l~~~~~wL~~~----~~~~i~~k~ 581 (627)
T PRK00290 509 VKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLK--E-LGDKVPADEKEKIEAAIKELKEALKGE----DKEAIKAKT 581 (627)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH--H-HhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHH
Confidence 999999999999999999999999999999999997 2 888999999999999999999999965 678999999
Q ss_pred HHHHhccchHHHhHHh
Q 002363 736 DVLKAIGDPVFFRFKE 751 (930)
Q Consensus 736 ~~L~~~~~pi~~R~~e 751 (930)
++|+++++|+..|+..
T Consensus 582 ~~L~~~~~~~~~~~~~ 597 (627)
T PRK00290 582 EELTQASQKLGEAMYQ 597 (627)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988754
No 9
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=6.4e-93 Score=852.95 Aligned_cols=588 Identities=25% Similarity=0.449 Sum_probs=518.5
Q ss_pred CccEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEe-CCcEEEcHhHHhhHhhCccchHhHhhhhhCCC
Q 002363 23 QSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFH-ESTRLLGEEASGIIARYPHRVYSQLRDMIGKP 101 (930)
Q Consensus 23 ~~~vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~-~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~ 101 (930)
...|||||||||||+||++ .+| .++|+.|..|+|.+||+|+|. ++++++|..|..++.++|.++++++|||||++
T Consensus 38 ~~~viGIDlGTt~s~va~~--~~g--~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~ 113 (673)
T PLN03184 38 AEKVVGIDLGTTNSAVAAM--EGG--KPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRK 113 (673)
T ss_pred CCCEEEEEeCcCcEEEEEE--ECC--eEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCC
Confidence 4569999999999999999 666 456999999999999999996 46899999999999999999999999999998
Q ss_pred chhhHhhHhhcCCCceEEECCCCceEEEeC-CCceecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHH
Q 002363 102 FKQVKHLIDSLYLPFNVVEDSRGAVSFKID-ENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGL 180 (930)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al 180 (930)
+.+++. ....+||.++.+.++.+.+.+. .+..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++
T Consensus 114 ~~d~~~--~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~ 191 (673)
T PLN03184 114 MSEVDE--ESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTAT 191 (673)
T ss_pred cchhhh--hhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHH
Confidence 766543 3457899999888888888875 3578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCC
Q 002363 181 MQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWD 260 (930)
Q Consensus 181 ~~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d 260 (930)
++||++|||++++||+||+|||++|+..+ ..+.++|||||||||||+||+++. .+.++|+++.|+
T Consensus 192 ~~Aa~~AGl~v~~li~EPtAAAlayg~~~---~~~~~vlV~DlGgGT~DvSi~~~~------------~~~~eVla~~gd 256 (673)
T PLN03184 192 KDAGRIAGLEVLRIINEPTAASLAYGFEK---KSNETILVFDLGGGTFDVSVLEVG------------DGVFEVLSTSGD 256 (673)
T ss_pred HHHHHHCCCCeEEEeCcHHHHHHHhhccc---CCCCEEEEEECCCCeEEEEEEEec------------CCEEEEEEecCC
Confidence 99999999999999999999999999875 245789999999999999999774 678999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCCcccEEEeeccc----CcccEEEecH
Q 002363 261 AELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYV----DIDFRSSITR 336 (930)
Q Consensus 261 ~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~i~ie~l~~----~~d~~~~ItR 336 (930)
.+|||++||..|++|+.++|..+ ++.++..+++++.+|+.+||++|+.||.+..+.+.++++.. +.++.+.|||
T Consensus 257 ~~LGG~dfD~~L~~~~~~~f~~~--~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR 334 (673)
T PLN03184 257 THLGGDDFDKRIVDWLASNFKKD--EGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTR 334 (673)
T ss_pred CccCHHHHHHHHHHHHHHHHHhh--cCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECH
Confidence 99999999999999999999988 77888889999999999999999999999999999987753 3578899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhh
Q 002363 337 QKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAAN 416 (930)
Q Consensus 337 ~efe~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ 416 (930)
++|+++|+++++++..+|+++|+++++...+|+.|+||||+||||+|++.|+++||. .+..++|||+|||+|||++|++
T Consensus 335 ~~fe~l~~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~-~~~~~~npdeaVA~GAAi~aa~ 413 (673)
T PLN03184 335 AKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGK-DPNVTVNPDEVVALGAAVQAGV 413 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCC-CcccccCcchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999986 6778899999999999999999
Q ss_pred hcCCccccCceeEEeecccceeeeecCCcccCCCCceeEEEeCCCCCCcceeEeeeecc----cEEEEEEeecCCCCCCC
Q 002363 417 LSDGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLPPG 492 (930)
Q Consensus 417 ls~~~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~----~~~i~~~y~~~~~~~~~ 492 (930)
+++. + +++.+.|++||+|||++.++.+ .+|||+|++||++++++|.+.. .+.|.+ |+|++.+..
T Consensus 414 ls~~--~-~~~~~~dv~p~slgi~~~~~~~-------~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i-~~ge~~~~~- 481 (673)
T PLN03184 414 LAGE--V-SDIVLLDVTPLSLGLETLGGVM-------TKIIPRNTTLPTSKSEVFSTAADGQTSVEINV-LQGEREFVR- 481 (673)
T ss_pred hccC--c-cceEEEecccccceEEecCCee-------EEEEeCCCccceecceEeeeecCCCcEEEEEE-Eeecccccc-
Confidence 9984 4 7899999999999999977654 3899999999999999998753 466666 899887765
Q ss_pred CCCCceeEEEEcCCccchhhhccCCCCCCceeEEEEEEccCcceEEeeeeeEEEEEEeeecCccccccccccCCCCCCch
Q 002363 493 ATSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISA 572 (930)
Q Consensus 493 ~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~a~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (930)
+|..||+|.|.++++++. | .+ +|+|+|.+|.+|+|+|...+.-
T Consensus 482 -~n~~lg~~~i~~i~~~~~-----g--~~-~i~v~f~id~~GiL~V~a~~~~---------------------------- 524 (673)
T PLN03184 482 -DNKSLGSFRLDGIPPAPR-----G--VP-QIEVKFDIDANGILSVSATDKG---------------------------- 524 (673)
T ss_pred -cCceEEEEEEeCCCCCCC-----C--Cc-eEEEEEEeCCCCeEEEEEEecC----------------------------
Confidence 578999999999987652 2 34 7999999999999988744210
Q ss_pred hhhhhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCchhhhhhhccccceeeeeeEEEeeccCCCCCCCHHHH
Q 002363 573 ETAAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEAL 652 (930)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~l~~~~~~~~~~~~ls~~~l 652 (930)
+ . ++ ..+++. ...+||.+++
T Consensus 525 ---t-------------------~-----------------------------~~----~~~~i~-----~~~~ls~eei 544 (673)
T PLN03184 525 ---T-------------------G-----------------------------KK----QDITIT-----GASTLPKDEV 544 (673)
T ss_pred ---C-------------------C-----------------------------eE----EEEEec-----ccccccHHHH
Confidence 0 0 00 123332 1236999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhhccCcccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHH
Q 002363 653 VDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQ 732 (930)
Q Consensus 653 ~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iY~~r~~l~~~~~~~~~~~~~er~~l~~~l~e~~~WL~~~g~~a~~~~~~ 732 (930)
+++++++.+|...|+.++++.++||+||+|||++|++|. + |..++++++|+++.+.|++.++|||.+ +.+.++
T Consensus 545 ~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~--e-~~~~~~~eer~~l~~~l~~~e~wL~~~----d~~~ik 617 (673)
T PLN03184 545 ERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLK--E-LGDKVPADVKEKVEAKLKELKDAIASG----STQKMK 617 (673)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHH--H-HhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHHH
Confidence 999999999999999999999999999999999999996 2 888999999999999999999999976 456777
Q ss_pred HHHHHHHhccchHHHhHH
Q 002363 733 ERLDVLKAIGDPVFFRFK 750 (930)
Q Consensus 733 ~kl~~L~~~~~pi~~R~~ 750 (930)
+++++|.+...++..++.
T Consensus 618 ~~~~~l~~~l~~l~~~~~ 635 (673)
T PLN03184 618 DAMAALNQEVMQIGQSLY 635 (673)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777766543
No 10
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=1.8e-91 Score=833.12 Aligned_cols=589 Identities=24% Similarity=0.415 Sum_probs=523.2
Q ss_pred CccEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEeCCcEEEcHhHHhhHhhCccchHhHhhhhhCCCc
Q 002363 23 QSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKPF 102 (930)
Q Consensus 23 ~~~vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~ 102 (930)
.+.+||||||||||+||++ .+| .++++.|..|.|.+||+|+|.++++++|..|..++..+|.++++++||+||+++
T Consensus 26 ~~~viGIDLGTTnS~vA~~--~~~--~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~ 101 (657)
T PTZ00186 26 QGDVIGVDLGTTYSCVATM--DGD--KARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRF 101 (657)
T ss_pred cceEEEEEeCcCeEEEEEE--eCC--ceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhcccc
Confidence 4469999999999999999 555 578999999999999999999999999999999999999999999999999966
Q ss_pred hhhHhhHhhcCCCceEEECCCCceEEEeCCCceecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHHH
Q 002363 103 KQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQ 182 (930)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~ 182 (930)
.+.........+||.++.+.++.+.+...++..++|++|++++|++|+..|+.++|.++.++|||||+||++.||+++++
T Consensus 102 ~d~~v~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~ 181 (657)
T PTZ00186 102 EDEHIQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKD 181 (657)
T ss_pred ccHHHHHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHH
Confidence 54433344457999999888888888876678899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCC
Q 002363 183 AAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAE 262 (930)
Q Consensus 183 Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~ 262 (930)
||++|||++++||+||+|||++|++.. ..++++|||||||||||+||+++. .+.++|+++.||.+
T Consensus 182 Aa~~AGl~v~rlInEPtAAAlayg~~~---~~~~~vlV~DlGGGT~DvSil~~~------------~g~~~V~at~Gd~~ 246 (657)
T PTZ00186 182 AGTIAGLNVIRVVNEPTAAALAYGMDK---TKDSLIAVYDLGGGTFDISVLEIA------------GGVFEVKATNGDTH 246 (657)
T ss_pred HHHHcCCCeEEEEcChHHHHHHHhccC---CCCCEEEEEECCCCeEEEEEEEEe------------CCEEEEEEecCCCC
Confidence 999999999999999999999999865 245799999999999999999874 68899999999999
Q ss_pred cchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCCcccEEEeecccC----cccEEEecHHH
Q 002363 263 LGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVD----IDFRSSITRQK 338 (930)
Q Consensus 263 lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~i~ie~l~~~----~d~~~~ItR~e 338 (930)
|||+|||.+|++|+.++|..+ ++.|+..+++++.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++
T Consensus 247 LGG~DfD~~l~~~~~~~f~~~--~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~e 324 (657)
T PTZ00186 247 LGGEDFDLALSDYILEEFRKT--SGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSK 324 (657)
T ss_pred CCchhHHHHHHHHHHHHHhhh--cCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHH
Confidence 999999999999999999988 788888889999999999999999999999999999877543 45889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhhc
Q 002363 339 FEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLS 418 (930)
Q Consensus 339 fe~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls 418 (930)
|+++|+++++++..++.++|++++++..+|+.|+||||+||||.|+++|+++||. .+..++|||+|||+|||++|++++
T Consensus 325 fe~l~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~-~~~~~~nPdeaVA~GAAi~a~~l~ 403 (657)
T PTZ00186 325 FEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQK-DPFRGVNPDEAVALGAATLGGVLR 403 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCC-CccccCCCchHHHHhHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999986 556899999999999999999999
Q ss_pred CCccccCceeEEeecccceeeeecCCcccCCCCceeEEEeCCCCCCcceeEeeeecc----cEEEEEEeecCCCCCCCCC
Q 002363 419 DGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLPPGAT 494 (930)
Q Consensus 419 ~~~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~----~~~i~~~y~~~~~~~~~~~ 494 (930)
+. + +++.+.|++||+|||++.++.+ .+|||+|++||++++..|++.. .+.|.| |+|++.++. +
T Consensus 404 ~~--~-~~~~l~Dv~p~slgie~~~g~~-------~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i-~qGe~~~~~--~ 470 (657)
T PTZ00186 404 GD--V-KGLVLLDVTPLSLGIETLGGVF-------TRMIPKNTTIPTKKSQTFSTAADNQTQVGIKV-FQGEREMAA--D 470 (657)
T ss_pred cc--c-CceEEEeeccccccceecCCEE-------EEEEeCCCEeeEEEeeccccccCCCceEEEEE-EEecccccc--c
Confidence 85 3 7899999999999999887654 3899999999999999998753 588999 999988876 6
Q ss_pred CCceeEEEEcCCccchhhhccCCCCCCceeEEEEEEccCcceEEeeeeeEEEEEEeeecCccccccccccCCCCCCchhh
Q 002363 495 SPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAET 574 (930)
Q Consensus 495 ~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~a~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (930)
|..||+|.|.|+++++. | .+ +|+|+|++|.||+|+|...+... .
T Consensus 471 n~~lg~~~l~~ip~~~~-----G--~~-~I~Vtf~iD~nGiL~V~a~d~~t---------------------g------- 514 (657)
T PTZ00186 471 NQMMGQFDLVGIPPAPR-----G--VP-QIEVTFDIDANGICHVTAKDKAT---------------------G------- 514 (657)
T ss_pred ccccceEEEcCCCCCCC-----C--CC-cEEEEEEEcCCCEEEEEEEEccC---------------------C-------
Confidence 88999999999998753 3 45 89999999999999876443100 0
Q ss_pred hhhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCchhhhhhhccccceeeeeeEEEeeccCCCCCCCHHHHHH
Q 002363 575 AAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVD 654 (930)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~l~~~~~~~~~~~~ls~~~l~~ 654 (930)
+ ...+.|.. ...|+++++++
T Consensus 515 ---------------------------------------------------~----~~~~~i~~-----~~~ls~~~i~~ 534 (657)
T PTZ00186 515 ---------------------------------------------------K----TQNITITA-----NGGLSKEQIEQ 534 (657)
T ss_pred ---------------------------------------------------c----EEEEEecc-----CccCCHHHHHH
Confidence 0 01233321 12499999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhhccCcccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 002363 655 AEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQER 734 (930)
Q Consensus 655 ~~~~l~~~~~~D~~~~~~~eakN~LEs~iY~~r~~l~~~~~~~~~~~~~er~~l~~~l~e~~~WL~~~g~~a~~~~~~~k 734 (930)
+.+...++...|+.++++.+++|.+|++||.++..+.+. ..+++++++.+...+...++||.. .+.+.+.|+++
T Consensus 535 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~ 608 (657)
T PTZ00186 535 MIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEW----KYVSDAEKENVKTLVAELRKAMEN--PNVAKDDLAAA 608 (657)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh----ccCCHHHHHHHHHHHHHHHHHHhc--CCcCHHHHHHH
Confidence 999999999999999999999999999999999999642 346889999999999999999973 45577999999
Q ss_pred HHHHHhccchHHHh
Q 002363 735 LDVLKAIGDPVFFR 748 (930)
Q Consensus 735 l~~L~~~~~pi~~R 748 (930)
+++|++.+.++..+
T Consensus 609 ~~~l~~~~~~~~~~ 622 (657)
T PTZ00186 609 TDKLQKAVMECGRT 622 (657)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888764
No 11
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=1.5e-91 Score=839.88 Aligned_cols=584 Identities=25% Similarity=0.460 Sum_probs=519.7
Q ss_pred cEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEeC-CcEEEcHhHHhhHhhCccchHhHhhhhhCCCch
Q 002363 25 AVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHE-STRLLGEEASGIIARYPHRVYSQLRDMIGKPFK 103 (930)
Q Consensus 25 ~vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~ 103 (930)
.|||||||||||+||++ .+| .++++.|..|+|.+||+|+|.+ +++++|..|..++.++|.++++++|||||++++
T Consensus 1 ~viGIDlGtt~s~va~~--~~g--~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~ 76 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVM--EGG--EPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD 76 (595)
T ss_pred CEEEEEeCcccEEEEEE--ECC--EEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch
Confidence 38999999999999999 776 3468999999999999999985 489999999999999999999999999999886
Q ss_pred hhHhhHhhcCCCceEEECCCCceEEEeCCCceecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHHHH
Q 002363 104 QVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA 183 (930)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~A 183 (930)
+++.. ...+||. +...+|.+.+.+. +..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 77 ~~~~~--~~~~~~~-v~~~~~~~~~~v~-~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~A 152 (595)
T TIGR02350 77 EVTEE--AKRVPYK-VVGDGGDVRVKVD-GKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDA 152 (595)
T ss_pred HHHHH--hhcCCee-EEcCCCceEEEEC-CEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 66554 3468888 5566888888886 478999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCCc
Q 002363 184 AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAEL 263 (930)
Q Consensus 184 a~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~l 263 (930)
|++|||++++||+||+|||++|++.+. ..+.++|||||||||||+||+++. .+.++|+++.|+..+
T Consensus 153 a~~AGl~v~~li~EptAAAl~y~~~~~--~~~~~vlV~D~Gggt~dvsv~~~~------------~~~~~v~~~~gd~~l 218 (595)
T TIGR02350 153 GKIAGLEVLRIINEPTAAALAYGLDKS--KKDEKILVFDLGGGTFDVSILEIG------------DGVFEVLSTAGDTHL 218 (595)
T ss_pred HHHcCCceEEEecchHHHHHHHhhccc--CCCcEEEEEECCCCeEEEEEEEec------------CCeEEEEEecCCccc
Confidence 999999999999999999999998652 346899999999999999999874 678999999999999
Q ss_pred chHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCCcccEEEeecccC----cccEEEecHHHH
Q 002363 264 GGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVD----IDFRSSITRQKF 339 (930)
Q Consensus 264 GG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~i~ie~l~~~----~d~~~~ItR~ef 339 (930)
||.+||..|++|+.++|..+ ++.++..+++++.+|+.+||++|+.||.+..+.+++++++.+ .++.+.|||++|
T Consensus 219 GG~d~D~~l~~~~~~~~~~~--~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~f 296 (595)
T TIGR02350 219 GGDDFDQRIIDWLADEFKKE--EGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKF 296 (595)
T ss_pred CchhHHHHHHHHHHHHHHHh--hCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHH
Confidence 99999999999999999988 778888899999999999999999999999999999987653 578899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhhcC
Q 002363 340 EELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSD 419 (930)
Q Consensus 340 e~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls~ 419 (930)
+++|+++++++..+|+++|+.++++..+|+.|+||||+||+|+|++.|+++||. .+..++|||+|||+|||++|+++++
T Consensus 297 e~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~-~~~~~~~pdeava~GAa~~aa~l~~ 375 (595)
T TIGR02350 297 EELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGK-EPNKSVNPDEVVAIGAAIQGGVLKG 375 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCC-cccCCcCcHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999995 7788999999999999999999998
Q ss_pred CccccCceeEEeecccceeeeecCCcccCCCCceeEEEeCCCCCCcceeEeeeecc----cEEEEEEeecCCCCCCCCCC
Q 002363 420 GIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLPPGATS 495 (930)
Q Consensus 420 ~~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~----~~~i~~~y~~~~~~~~~~~~ 495 (930)
. + +++.+.|++||+||+++.++.+ .+|||+|+++|++++++|.+.. .+.|.+ |+|++.++. ++
T Consensus 376 ~--~-~~~~~~d~~~~~igi~~~~~~~-------~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i-~~ge~~~~~--~~ 442 (595)
T TIGR02350 376 D--V-KDVLLLDVTPLSLGIETLGGVM-------TKLIERNTTIPTKKSQVFSTAADNQPAVDIHV-LQGERPMAA--DN 442 (595)
T ss_pred C--c-ccceeeecccceeEEEecCCce-------EEEEeCCCcCCccceEeeeccCCCCcEEEEEE-Eeecccccc--cC
Confidence 6 4 7899999999999999877644 3899999999999999998754 467888 999887765 57
Q ss_pred CceeEEEEcCCccchhhhccCCCCCCceeEEEEEEccCcceEEeeeeeEEEEEEeeecCccccccccccCCCCCCchhhh
Q 002363 496 PVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAETA 575 (930)
Q Consensus 496 ~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~a~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (930)
..||+|.|.++++.+. | .+ +|+|+|++|.+|+|+|...+... .
T Consensus 443 ~~lg~~~i~~~~~~~~-----g--~~-~i~v~f~~d~~G~l~v~~~~~~~---------------------~-------- 485 (595)
T TIGR02350 443 KSLGRFELTGIPPAPR-----G--VP-QIEVTFDIDANGILHVSAKDKGT---------------------G-------- 485 (595)
T ss_pred cEeEEEEECCCCCCCC-----C--Cc-eEEEEEEEcCCCeEEEEEEEccC---------------------C--------
Confidence 8899999999987642 2 34 79999999999999887443100 0
Q ss_pred hhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCchhhhhhhccccceeeeeeEEEeeccCCCCCCCHHHHHHH
Q 002363 576 AQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDA 655 (930)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~l~~~~~~~~~~~~ls~~~l~~~ 655 (930)
++ ..+++.. ..+||.++++++
T Consensus 486 --------------------------------------------------~~----~~~~i~~-----~~~ls~~~~~~~ 506 (595)
T TIGR02350 486 --------------------------------------------------KE----QSITITA-----SSGLSEEEIERM 506 (595)
T ss_pred --------------------------------------------------ce----EEEEecc-----ccccCHHHHHHH
Confidence 00 1233321 236999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhhccCcccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 002363 656 EAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERL 735 (930)
Q Consensus 656 ~~~l~~~~~~D~~~~~~~eakN~LEs~iY~~r~~l~~~~~~~~~~~~~er~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl 735 (930)
++++.+|...|+.++++.++||.||+|||++|++|++ +..++++++|++|.+.+++.++|||++ +..+|++++
T Consensus 507 ~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~---~~~~~~~~e~~~l~~~l~~~~~wL~~~----d~~~i~~~~ 579 (595)
T TIGR02350 507 VKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKE---AGDKLPAEEKEKIEKAVAELKEALKGE----DVEEIKAKT 579 (595)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHH
Confidence 9999999999999999999999999999999999963 678899999999999999999999975 667999999
Q ss_pred HHHHhccchHHHhH
Q 002363 736 DVLKAIGDPVFFRF 749 (930)
Q Consensus 736 ~~L~~~~~pi~~R~ 749 (930)
++|+++++++..++
T Consensus 580 ~~l~~~~~~~~~~~ 593 (595)
T TIGR02350 580 EELQQALQKLAEAM 593 (595)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988653
No 12
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=1.4e-91 Score=839.68 Aligned_cols=587 Identities=25% Similarity=0.438 Sum_probs=522.4
Q ss_pred ccEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEeC-CcEEEcHhHHhhHhhCccchHhHhhhhhCCCc
Q 002363 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHE-STRLLGEEASGIIARYPHRVYSQLRDMIGKPF 102 (930)
Q Consensus 24 ~~vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~ 102 (930)
+.+||||||||||+||++ .+| .++|+.|..|+|.+||+|+|.+ +++++|..|..++..+|.++++++||+||+.+
T Consensus 2 ~~viGIDlGTt~s~va~~--~~g--~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~ 77 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVM--EGG--KPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKF 77 (621)
T ss_pred CceEEEEeCcccEEEEEE--ECC--EEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCCh
Confidence 369999999999999999 776 4579999999999999999965 68999999999999999999999999999987
Q ss_pred hhhHhhHhhcCCCceEEECCCCceEEEeCC-CceecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHH
Q 002363 103 KQVKHLIDSLYLPFNVVEDSRGAVSFKIDE-NNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLM 181 (930)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~ 181 (930)
.++.... ..+||.++.+.+|.+.+.+.. +..++|+++++++|++|++.|+.+++.++.++|||||+||++.||++++
T Consensus 78 ~~~~~~~--~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~ 155 (621)
T CHL00094 78 SEISEEA--KQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATK 155 (621)
T ss_pred HHHHhhh--hcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHH
Confidence 7655433 358999998888888887643 4689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCC
Q 002363 182 QAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDA 261 (930)
Q Consensus 182 ~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~ 261 (930)
+||++|||++++||+||+|||++|+... ..+.++|||||||||||+||+++. .+.++|++++|+.
T Consensus 156 ~Aa~~AGl~v~~li~EptAAAlay~~~~---~~~~~vlV~DlGgGT~DvSv~~~~------------~~~~~vla~~gd~ 220 (621)
T CHL00094 156 DAGKIAGLEVLRIINEPTAASLAYGLDK---KNNETILVFDLGGGTFDVSILEVG------------DGVFEVLSTSGDT 220 (621)
T ss_pred HHHHHcCCceEEEeccHHHHHHHhcccc---CCCCEEEEEEcCCCeEEEEEEEEc------------CCEEEEEEEecCC
Confidence 9999999999999999999999999865 245789999999999999999764 6789999999999
Q ss_pred CcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCCcccEEEeecccC----cccEEEecHH
Q 002363 262 ELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVD----IDFRSSITRQ 337 (930)
Q Consensus 262 ~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~i~ie~l~~~----~d~~~~ItR~ 337 (930)
.+||++||..|++|+.++|..+ ++.++..+++++.+|+.+||++|+.||.+..+.+.+++++.+ .++...|||+
T Consensus 221 ~lGG~d~D~~l~~~~~~~~~~~--~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~ 298 (621)
T CHL00094 221 HLGGDDFDKKIVNWLIKEFKKK--EGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRA 298 (621)
T ss_pred CcChHHHHHHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHH
Confidence 9999999999999999999998 788888899999999999999999999999999999887642 5788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhh
Q 002363 338 KFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANL 417 (930)
Q Consensus 338 efe~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~l 417 (930)
+||++|+++++++..+|+++|+.+++...+|+.|+||||+||+|.|++.|.++||. .+..++|||+|||+|||++|+++
T Consensus 299 ~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~-~~~~~~~pdeava~GAA~~aa~l 377 (621)
T CHL00094 299 KFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGK-KPNQSVNPDEVVAIGAAVQAGVL 377 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCC-CcCcCCCchhHHHhhhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999996 67889999999999999999999
Q ss_pred cCCccccCceeEEeecccceeeeecCCcccCCCCceeEEEeCCCCCCcceeEeeeec----ccEEEEEEeecCCCCCCCC
Q 002363 418 SDGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHA----KDFEVSLAYESEDLLPPGA 493 (930)
Q Consensus 418 s~~~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~----~~~~i~~~y~~~~~~~~~~ 493 (930)
++. + +++.+.|++||+||+++.++.+ .+|||+|++||++++++|.+. ..+.|.+ |+|++.++.
T Consensus 378 s~~--~-~~~~~~d~~~~~lgi~~~~~~~-------~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i-~~ge~~~~~-- 444 (621)
T CHL00094 378 AGE--V-KDILLLDVTPLSLGVETLGGVM-------TKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHV-LQGERELAK-- 444 (621)
T ss_pred cCC--c-cceeeeeeeceeeeeeccCCEE-------EEEEeCCCccceeeeEEEEeccCCCcEEEEEE-EeeccccCC--
Confidence 984 4 7899999999999999876644 389999999999999999874 4688888 999988776
Q ss_pred CCCceeEEEEcCCccchhhhccCCCCCCceeEEEEEEccCcceEEeeeeeEEEEEEeeecCccccccccccCCCCCCchh
Q 002363 494 TSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAE 573 (930)
Q Consensus 494 ~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~a~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (930)
+|..||+|.|.++++.+. | .+ +|+|+|++|.+|+|+|...+..
T Consensus 445 ~n~~lg~~~i~~~~~~~~-----g--~~-~i~v~f~id~~Gil~v~~~~~~----------------------------- 487 (621)
T CHL00094 445 DNKSLGTFRLDGIPPAPR-----G--VP-QIEVTFDIDANGILSVTAKDKG----------------------------- 487 (621)
T ss_pred CCCEEEEEEEeCCCCCCC-----C--CC-cEEEEEEECCCCeEEEEEeecc-----------------------------
Confidence 588999999999987642 2 34 7999999999999988744210
Q ss_pred hhhhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCchhhhhhhccccceeeeeeEEEeeccCCCCCCCHHHHH
Q 002363 574 TAAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALV 653 (930)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~l~~~~~~~~~~~~ls~~~l~ 653 (930)
+ . ++ ..+.+. ...+|+.++++
T Consensus 488 --t-------------------------------------~-----------~~----~~~~i~-----~~~~ls~~~i~ 508 (621)
T CHL00094 488 --T-------------------------------------G-----------KE----QSITIQ-----GASTLPKDEVE 508 (621)
T ss_pred --C-------------------------------------C-----------ce----eeeeec-----cchhccHHHHH
Confidence 0 0 00 022232 12369999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhhccCcccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHH
Q 002363 654 DAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQE 733 (930)
Q Consensus 654 ~~~~~l~~~~~~D~~~~~~~eakN~LEs~iY~~r~~l~~~~~~~~~~~~~er~~l~~~l~e~~~WL~~~g~~a~~~~~~~ 733 (930)
++++++.+|...|+.++++.++||.||+|||.+|++|++ |..++++++|+++.+.|+++++|||++ ..++|++
T Consensus 509 ~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~~~wl~~~----~~~~~~~ 581 (621)
T CHL00094 509 RMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKE---LKDKISEEKKEKIENLIKKLRQALQND----NYESIKS 581 (621)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHH
Confidence 999999999999999999999999999999999999972 888999999999999999999999976 3479999
Q ss_pred HHHHHHhccchHHHhHH
Q 002363 734 RLDVLKAIGDPVFFRFK 750 (930)
Q Consensus 734 kl~~L~~~~~pi~~R~~ 750 (930)
++++|+++++|+..++.
T Consensus 582 ~~~~l~~~~~~~~~kl~ 598 (621)
T CHL00094 582 LLEELQKALMEIGKEVY 598 (621)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987543
No 13
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=2.9e-88 Score=805.94 Aligned_cols=576 Identities=23% Similarity=0.359 Sum_probs=510.5
Q ss_pred EEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEeC-CcEEEcHhHHhhHhhCccchHhHhhhhhCCCchh
Q 002363 26 VSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHE-STRLLGEEASGIIARYPHRVYSQLRDMIGKPFKQ 104 (930)
Q Consensus 26 vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~~ 104 (930)
+||||||||||+||++ .+| .++++.|..|+|.+||+|+|.+ +++++|..|..++.++|.++++++|||||+++.+
T Consensus 1 ~iGIDlGTtns~va~~--~~g--~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d 76 (599)
T TIGR01991 1 AVGIDLGTTNSLVASV--RSG--VPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIED 76 (599)
T ss_pred CEEEEEccccEEEEEE--ECC--EEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccc
Confidence 5899999999999999 666 4689999999999999999975 4899999999999999999999999999997765
Q ss_pred hHhhHhhcCCCceEEECCCCceEEEeCCCceecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHHHHH
Q 002363 105 VKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAA 184 (930)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa 184 (930)
++. ...+||.++...+|.+.+.+.++ .++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 77 ~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa 152 (599)
T TIGR01991 77 IKT---FSILPYRFVDGPGEMVRLRTVQG-TVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAA 152 (599)
T ss_pred hhh---cccCCEEEEEcCCCceEEEeCCC-EEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 543 45789999888888999988764 79999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCCcc
Q 002363 185 ELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELG 264 (930)
Q Consensus 185 ~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lG 264 (930)
++|||++++||+||+|||++|++.+. .+.++|||||||||||+||+++. .+.++|++++|+..||
T Consensus 153 ~~AGl~v~~li~EPtAAAlay~~~~~---~~~~vlV~DlGgGT~DvSi~~~~------------~~~~~vla~~gd~~lG 217 (599)
T TIGR01991 153 RLAGLNVLRLLNEPTAAAVAYGLDKA---SEGIYAVYDLGGGTFDVSILKLT------------KGVFEVLATGGDSALG 217 (599)
T ss_pred HHcCCCceEEecCHHHHHHHHhhccC---CCCEEEEEEcCCCeEEEEEEEEc------------CCeEEEEEEcCCCCCC
Confidence 99999999999999999999998762 45799999999999999999874 5789999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCCcccEEEeecccCcccEEEecHHHHHHHHH
Q 002363 265 GQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELCE 344 (930)
Q Consensus 265 G~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~ItR~efe~l~~ 344 (930)
|++||..|++|+.+++ +.+...+++.+.+|+.+||++|+.||.+..+.+.++. ++.++.++|||++|+++|+
T Consensus 218 G~d~D~~l~~~l~~~~------~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~ 289 (599)
T TIGR01991 218 GDDFDHALAKWILKQL------GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQ 289 (599)
T ss_pred HHHHHHHHHHHHHHhh------CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHH
Confidence 9999999999999764 3444567899999999999999999999988888874 7899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhhcCCcccc
Q 002363 345 DLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGIKLN 424 (930)
Q Consensus 345 ~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls~~~~~~ 424 (930)
++++++..+|.++|+++++...+|+.|+||||+||+|+|++.|+++||. .+..++|||+|||+|||++|+++++.++.
T Consensus 290 ~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~-~~~~~~npdeaVA~GAai~a~~l~~~~~~- 367 (599)
T TIGR01991 290 PLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQ-EPLTDIDPDQVVALGAAIQADLLAGNRIG- 367 (599)
T ss_pred HHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCC-CCCCCCCCcHHHHHHHHHHHHHhcccccc-
Confidence 9999999999999999999999999999999999999999999999986 45678999999999999999999998887
Q ss_pred CceeEEeecccceeeeecCCcccCCCCceeEEEeCCCCCCcceeEeeeecc----cEEEEEEeecCCCCCCCCCCCceeE
Q 002363 425 RKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLPPGATSPVFAK 500 (930)
Q Consensus 425 ~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~----~~~i~~~y~~~~~~~~~~~~~~i~~ 500 (930)
+++.+.|++||+||+++.++.+ .+|||+|+++|++++..|++.. .+.|.+ |+|++.++. +|..||+
T Consensus 368 ~~~~l~dv~p~slgi~~~~g~~-------~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i-~qGe~~~~~--~n~~lg~ 437 (599)
T TIGR01991 368 NDLLLLDVTPLSLGIETMGGLV-------EKIIPRNTPIPVARAQEFTTYKDGQTAMVIHV-VQGERELVE--DCRSLAR 437 (599)
T ss_pred CceEEEEeeeeeeEEEecCCEE-------EEEEeCCCcCCccceEEEEEccCCCeEEEEEE-Eeecccccc--cCceEEE
Confidence 8999999999999999977654 3899999999999999997643 477888 999988776 5889999
Q ss_pred EEEcCCccchhhhccCCCCCCceeEEEEEEccCcceEEeeeeeEEEEEEeeecCccccccccccCCCCCCchhhhhhccc
Q 002363 501 YAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAETAAQNMT 580 (930)
Q Consensus 501 ~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~a~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (930)
|.|.|+++.+. | .+ +|.|+|++|.||+|+|...+.. +
T Consensus 438 ~~l~~i~~~~~-----g--~~-~i~v~f~id~~gil~V~a~~~~-------------------------------t---- 474 (599)
T TIGR01991 438 FELRGIPPMVA-----G--AA-RIRVTFQVDADGLLTVSAQEQS-------------------------------T---- 474 (599)
T ss_pred EEEcCCCCCCC-----C--CC-cEEEEEEECCCCeEEEEEEECC-------------------------------C----
Confidence 99999987642 2 44 8999999999999987643200 0
Q ss_pred cccccccccCCCCCCCCCchhhhhhcCCCCCCCCCchhhhhhhccccceeeeeeEEEeeccCCCCCCCHHHHHHHHHHHH
Q 002363 581 VEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDAEAKLE 660 (930)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~l~~~~~~~~~~~~ls~~~l~~~~~~l~ 660 (930)
. +++ .+.+.. ...|++++++++.+.+.
T Consensus 475 -----------------------------------------~---~~~----~~~i~~-----~~~l~~~~i~~~~~~~~ 501 (599)
T TIGR01991 475 -----------------------------------------G---VEQ----SIQVKP-----SYGLSDEEIERMLKDSF 501 (599)
T ss_pred -----------------------------------------C---cEE----EEeccc-----ccCCCHHHHHHHHHHHH
Confidence 0 000 122221 12599999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHhhccCcccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 002363 661 ELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDVLKA 740 (930)
Q Consensus 661 ~~~~~D~~~~~~~eakN~LEs~iY~~r~~l~~~~~~~~~~~~~er~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~ 740 (930)
++...|+.++++.+++|.+|+|+|.++..+.+ +..++++++|+.+...+++.++||+++ +.+.++++.++|++
T Consensus 502 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~l~~~----~~~~~~~~~~~l~~ 574 (599)
T TIGR01991 502 KHAEEDMYARALAEQKVEAERILEALQAALAA---DGDLLSEDERAAIDAAMEALQKALQGD----DADAIKAAIEALEE 574 (599)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHH
Confidence 99999999999999999999999999999864 456789999999999999999999965 56799999999999
Q ss_pred ccchHHH
Q 002363 741 IGDPVFF 747 (930)
Q Consensus 741 ~~~pi~~ 747 (930)
+..++..
T Consensus 575 ~~~~~~~ 581 (599)
T TIGR01991 575 ATDNFAA 581 (599)
T ss_pred HHHHHHH
Confidence 9988875
No 14
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=5.4e-88 Score=816.68 Aligned_cols=591 Identities=36% Similarity=0.629 Sum_probs=512.7
Q ss_pred EEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEeCCcEEEcHhHHhhHhhCccchHhHhhhhhCCCchhh
Q 002363 26 VSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKPFKQV 105 (930)
Q Consensus 26 vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~~~ 105 (930)
||||||||+||+||++ .+| .++++.|..|+|++||+|+|.+++++||..|...+.++|.++++++|||||+.+.+.
T Consensus 1 viGID~Gt~~~~va~~--~~~--~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~ 76 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVF--KNG--KPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDP 76 (602)
T ss_dssp EEEEEE-SSEEEEEEE--ETT--EEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSH
T ss_pred CEEEEeccCCEEEEEE--Eec--cccccccccccccccceeeEeeecccCCcchhhhccccccccccccccccccccccc
Confidence 7999999999999999 655 679999999999999999999999999999999999999999999999999965443
Q ss_pred HhhHhhcCCCceEEECCCCceEEEeC-CC--ceecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHHH
Q 002363 106 KHLIDSLYLPFNVVEDSRGAVSFKID-EN--NNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQ 182 (930)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~ 182 (930)
........+||.++.+++|.+.+.+. .| ..++|+++++++|++|++.++.+++..+.++|||||++|++.||+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~ 156 (602)
T PF00012_consen 77 DVQKEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRD 156 (602)
T ss_dssp HHHHHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHH
T ss_pred ccchhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccc
Confidence 33344567899999888888888765 23 4899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCC
Q 002363 183 AAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAE 262 (930)
Q Consensus 183 Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~ 262 (930)
||++|||++++||+||+|||++|++.+.. .++++|||||||||+|+|++++. .+.+++++..|+..
T Consensus 157 Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~--~~~~vlv~D~Gggt~dvs~~~~~------------~~~~~v~~~~~~~~ 222 (602)
T PF00012_consen 157 AAELAGLNVLRLINEPTAAALAYGLERSD--KGKTVLVVDFGGGTFDVSVVEFS------------NGQFEVLATAGDNN 222 (602)
T ss_dssp HHHHTT-EEEEEEEHHHHHHHHTTTTSSS--SEEEEEEEEEESSEEEEEEEEEE------------TTEEEEEEEEEETT
T ss_pred cccccccccceeecccccccccccccccc--cccceeccccccceEeeeehhcc------------cccccccccccccc
Confidence 99999999999999999999999987633 56899999999999999999875 67899999999999
Q ss_pred cchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcC--CCcccEEEeeccc-CcccEEEecHHHH
Q 002363 263 LGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSA--NTMAPISVESLYV-DIDFRSSITRQKF 339 (930)
Q Consensus 263 lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~--~~~~~i~ie~l~~-~~d~~~~ItR~ef 339 (930)
+||++||.+|++|+.++|..+ ++.++..+++++.+|+.+|+++|+.||. +..+.+.++++++ |.++.+.|||++|
T Consensus 223 lGG~~~D~~l~~~~~~~~~~~--~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~f 300 (602)
T PF00012_consen 223 LGGRDFDEALAEYLLEKFKKK--YKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEF 300 (602)
T ss_dssp CSHHHHHHHHHHHHHHHHHHH--HSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHH
T ss_pred cccceecceeecccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence 999999999999999999998 7778888999999999999999999999 6778888998888 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhhcC
Q 002363 340 EELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSD 419 (930)
Q Consensus 340 e~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls~ 419 (930)
+++|+++++++..+|.++|+.++++..+|++|+||||+||+|+|++.|+++|| ..+..++||++|||+|||++|+.+++
T Consensus 301 e~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~~ 379 (602)
T PF00012_consen 301 EELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILSG 379 (602)
T ss_dssp HHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccchhhhcc
Confidence 99999999999999999999999999999999999999999999999999999 57889999999999999999999999
Q ss_pred CccccCceeEEeecccceeeeecCCcccCCCCceeEEEeCCCCCCcceeEeeeec----ccEEEEEEeecCCCCCCCCCC
Q 002363 420 GIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHA----KDFEVSLAYESEDLLPPGATS 495 (930)
Q Consensus 420 ~~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~----~~~~i~~~y~~~~~~~~~~~~ 495 (930)
.+++ +++.+.|++|++|||.+.++.+ .+++++|+++|..+...|.+. .+|.|.| |+|+..... .+
T Consensus 380 ~~~~-~~~~~~d~~~~~~~i~~~~~~~-------~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i-~~g~~~~~~--~~ 448 (602)
T PF00012_consen 380 SFRV-KDIKIIDVTPFSIGIEVSNGKF-------SKIIPKNTPIPSKKSKSFKTVTDNQTSISIDI-YEGESSSFE--DN 448 (602)
T ss_dssp SCSS-TSSCESEBESSEEEEEETTTEE-------EEEESTTEBSSEEEEEEEEESSTTCSEEEEEE-EESSSSBGG--GS
T ss_pred cccc-cccccccccccccccccccccc-------ccccccccccccccccccchhcccccccccee-eeccccccc--cc
Confidence 9999 9999999999999999887654 389999999999988777654 3699999 778765544 46
Q ss_pred CceeEEEEcCCccchhhhccCCCCCCceeEEEEEEccCcceEEeeeeeEEEEEEeeecCccccccccccCCCCCCchhhh
Q 002363 496 PVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAETA 575 (930)
Q Consensus 496 ~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~a~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (930)
..||+|.|.++++.+. | .+ +|+|+|++|.+|+|+|..+++....
T Consensus 449 ~~ig~~~i~~i~~~~~-----g--~~-~i~v~f~ld~~Gil~V~~~~~~~~~---------------------------- 492 (602)
T PF00012_consen 449 KKIGSYTISGIPPAPK-----G--KP-KIKVTFELDENGILSVEAAEVETGK---------------------------- 492 (602)
T ss_dssp EEEEEEEEES-SSSST-----T--SS-EEEEEEEEETTSEEEEEEEETTTTE----------------------------
T ss_pred cccccccccccccccc-----c--cc-ceeeEEeeeeeeehhhhhccccccc----------------------------
Confidence 8999999999986642 2 34 8999999999999998866531000
Q ss_pred hhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCchhhhhhhccccceeeeeeEEEeeccCCCCCCCHHHHHHH
Q 002363 576 AQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDA 655 (930)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~l~~~~~~~~~~~~ls~~~l~~~ 655 (930)
...+.+.. ...+++++++++
T Consensus 493 -------------------------------------------------------~~~~~v~~-----~~~~~~~~~~~~ 512 (602)
T PF00012_consen 493 -------------------------------------------------------EEEVTVKK-----KETLSKEEIEEL 512 (602)
T ss_dssp -------------------------------------------------------EEEEEEES-----SSSSCHHHHHHH
T ss_pred -------------------------------------------------------cccccccc-----cccccccccccc
Confidence 00122221 123899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhhccCcccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 002363 656 EAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERL 735 (930)
Q Consensus 656 ~~~l~~~~~~D~~~~~~~eakN~LEs~iY~~r~~l~~~~~~~~~~~~~er~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl 735 (930)
++++.++...|+.++++.+++|.||+|+|++|+.|++. ..+++++++ .++|+++.+||++++++++.++|++|+
T Consensus 513 ~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~---~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl 586 (602)
T PF00012_consen 513 KKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEED---KDFVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKL 586 (602)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---GGGSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhh---hccCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHH
Confidence 99999999999999999999999999999999999874 455666655 899999999999998899999999999
Q ss_pred HHHHhccchHHHhHH
Q 002363 736 DVLKAIGDPVFFRFK 750 (930)
Q Consensus 736 ~~L~~~~~pi~~R~~ 750 (930)
++|+++.+||..|++
T Consensus 587 ~~L~~~~~~i~~r~~ 601 (602)
T PF00012_consen 587 EELKKVIEPIKKRYM 601 (602)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999985
No 15
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=9.1e-87 Score=794.46 Aligned_cols=578 Identities=23% Similarity=0.357 Sum_probs=507.5
Q ss_pred CccEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEeCCcEEEcHhHHhhHhhCccchHhHhhhhhCCCc
Q 002363 23 QSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKPF 102 (930)
Q Consensus 23 ~~~vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~ 102 (930)
...+||||||||||+||++ .+| .++++.|..|+|.+||+|+|.+++++||..|..++.++|.++++++|||||+.+
T Consensus 18 ~~~~iGIDlGTt~s~va~~--~~g--~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~ 93 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATV--RSG--QAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSL 93 (616)
T ss_pred CCeEEEEEeccccEEEEEE--ECC--EEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCc
Confidence 3469999999999999999 666 458999999999999999999888999999999999999999999999999987
Q ss_pred hhhHhhHhhcCCCceEEECCCCceEEEeCCCceecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHHH
Q 002363 103 KQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQ 182 (930)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~ 182 (930)
.+++.. ...+||.+....+|.+.+.+.++ .++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++
T Consensus 94 ~d~~~~--~~~~~~~~~~~~~g~~~~~~~~~-~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 170 (616)
T PRK05183 94 ADIQQR--YPHLPYQFVASENGMPLIRTAQG-LKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKD 170 (616)
T ss_pred hhhhhh--hhcCCeEEEecCCCceEEEecCC-eEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHH
Confidence 665432 34689999887788888888654 799999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCC
Q 002363 183 AAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAE 262 (930)
Q Consensus 183 Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~ 262 (930)
||++|||++++||+||+|||++|++.+ ..++++|||||||||||+||+++. .+.++|++++||.+
T Consensus 171 Aa~~AGl~v~~li~EPtAAAlay~~~~---~~~~~vlV~DlGGGT~DvSv~~~~------------~~~~evlat~gd~~ 235 (616)
T PRK05183 171 AARLAGLNVLRLLNEPTAAAIAYGLDS---GQEGVIAVYDLGGGTFDISILRLS------------KGVFEVLATGGDSA 235 (616)
T ss_pred HHHHcCCCeEEEecchHHHHHHhhccc---CCCCEEEEEECCCCeEEEEEEEee------------CCEEEEEEecCCCC
Confidence 999999999999999999999999865 235799999999999999999875 57899999999999
Q ss_pred cchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCCcccEEEeecccCcccEEEecHHHHHHH
Q 002363 263 LGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEEL 342 (930)
Q Consensus 263 lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~ItR~efe~l 342 (930)
|||.+||..|++|+.++|.. +...+++++.+|+.+||++|+.||.+..+.+.+.. +...|||++|+++
T Consensus 236 lGG~d~D~~l~~~~~~~~~~------~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~------~~~~itr~efe~l 303 (616)
T PRK05183 236 LGGDDFDHLLADWILEQAGL------SPRLDPEDQRLLLDAARAAKEALSDADSVEVSVAL------WQGEITREQFNAL 303 (616)
T ss_pred cCHHHHHHHHHHHHHHHcCC------CcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEec------CCCeEcHHHHHHH
Confidence 99999999999999988743 33467899999999999999999999988888853 2235999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhhcCCcc
Q 002363 343 CEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGIK 422 (930)
Q Consensus 343 ~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls~~~~ 422 (930)
|+++++++..+|.++|+++++...+|+.|+||||+||+|+|++.|+++||. .+..++|||+|||+|||++|+++++.+.
T Consensus 304 ~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~-~~~~~~npdeaVA~GAAi~a~~l~~~~~ 382 (616)
T PRK05183 304 IAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGR-TPLTSIDPDKVVAIGAAIQADILAGNKP 382 (616)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhcc-CcCcCCCchHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999999999999997 4557899999999999999999999887
Q ss_pred ccCceeEEeecccceeeeecCCcccCCCCceeEEEeCCCCCCcceeEeeeecc----cEEEEEEeecCCCCCCCCCCCce
Q 002363 423 LNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLPPGATSPVF 498 (930)
Q Consensus 423 ~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~----~~~i~~~y~~~~~~~~~~~~~~i 498 (930)
+ +++.+.|++|++|||++.++.+ .+|||+|++||++++..|++.. .+.|.+ |+|++.++. ++..|
T Consensus 383 ~-~~~~l~dv~p~slgi~~~~g~~-------~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v-~qGe~~~~~--~n~~l 451 (616)
T PRK05183 383 D-SDMLLLDVIPLSLGLETMGGLV-------EKIIPRNTTIPVARAQEFTTFKDGQTAMAIHV-VQGERELVA--DCRSL 451 (616)
T ss_pred c-CceEEEeeccccccceecCCeE-------EEEEeCCCcccccccEEEEeccCCCeEEEEEE-ecccccccc--cccEE
Confidence 7 8999999999999999876654 3899999999999999997643 478888 999988876 57899
Q ss_pred eEEEEcCCccchhhhccCCCCCCceeEEEEEEccCcceEEeeeeeEEEEEEeeecCccccccccccCCCCCCchhhhhhc
Q 002363 499 AKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAETAAQN 578 (930)
Q Consensus 499 ~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~a~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (930)
|+|.|.|+++.+. | .+ +|+|+|++|.+|+|+|...+... .
T Consensus 452 g~~~i~~i~~~~~-----g--~~-~i~v~f~~d~~Gil~V~a~~~~~---------------------~----------- 491 (616)
T PRK05183 452 ARFELRGIPPMAA-----G--AA-RIRVTFQVDADGLLSVTAMEKST---------------------G----------- 491 (616)
T ss_pred EEEEeCCCCCCCC-----C--Cc-cEEEEEEECCCCeEEEEEEEcCC---------------------C-----------
Confidence 9999999998642 2 34 89999999999999887332100 0
Q ss_pred cccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCchhhhhhhccccceeeeeeEEEeeccCCCCCCCHHHHHHHHHH
Q 002363 579 MTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDAEAK 658 (930)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~l~~~~~~~~~~~~ls~~~l~~~~~~ 658 (930)
+ ..++.+. ....|+.++++++.+.
T Consensus 492 -----------------------------------------------~----~~~~~i~-----~~~~ls~~~i~~~~~~ 515 (616)
T PRK05183 492 -----------------------------------------------V----EASIQVK-----PSYGLTDDEIARMLKD 515 (616)
T ss_pred -----------------------------------------------c----EEEeccc-----ccccCCHHHHHHHHHH
Confidence 0 0123332 1225999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhHHHHHHhhccCcccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 002363 659 LEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDVL 738 (930)
Q Consensus 659 l~~~~~~D~~~~~~~eakN~LEs~iY~~r~~l~~~~~~~~~~~~~er~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L 738 (930)
+.++...|+..+++.+++|++|+|||.++..+.+ ....+++++|+.+...+++.++||..+ +.+.|++++++|
T Consensus 516 ~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~l~~~----d~~~~~~~~~~l 588 (616)
T PRK05183 516 SMSHAEEDMQARALAEQKVEAERVLEALQAALAA---DGDLLSAAERAAIDAAMAALREVAQGD----DADAIEAAIKAL 588 (616)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHH
Confidence 9999999999999999999999999999999964 235678999999999999999999743 778999999999
Q ss_pred HhccchHHHhH
Q 002363 739 KAIGDPVFFRF 749 (930)
Q Consensus 739 ~~~~~pi~~R~ 749 (930)
++++.++..+.
T Consensus 589 ~~~~~~~~~~~ 599 (616)
T PRK05183 589 DKATQEFAARR 599 (616)
T ss_pred HHHHHHHHHHH
Confidence 99999998633
No 16
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-89 Score=771.16 Aligned_cols=604 Identities=30% Similarity=0.529 Sum_probs=545.9
Q ss_pred cCCCccEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEeCCcEEEcHhHHhhHhhCccchHhHhhhhhC
Q 002363 20 SHSQSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIG 99 (930)
Q Consensus 20 ~~~~~~vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG 99 (930)
++..+.++|||||||+++|+++ ..| .++++.|+.|.|.+||+|+|.+.++++|..|..+..++|.++++++||++|
T Consensus 3 ~~~~~~aiGIdlGtT~s~v~v~--~~~--~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliG 78 (620)
T KOG0101|consen 3 ATPESVAIGIDLGTTYSCVGVY--QSG--KVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIG 78 (620)
T ss_pred CccccceeeEeccCccceeeeE--cCC--cceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcC
Confidence 3456789999999999999999 544 689999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHhhHhhcCCCceEEECCCCceEEEeCC--C-ceecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHH
Q 002363 100 KPFKQVKHLIDSLYLPFNVVEDSRGAVSFKIDE--N-NNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAE 176 (930)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~q 176 (930)
+.+.+.......++|||.+..+.++.+.+.+.. . ..++|+++.+|+|.+++..|+.++|..+.++|||||+||+..|
T Consensus 79 r~f~d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Q 158 (620)
T KOG0101|consen 79 RFFDDPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQ 158 (620)
T ss_pred ccccchhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHH
Confidence 977766666677789999986656666666543 3 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEE
Q 002363 177 RKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKD 256 (930)
Q Consensus 177 R~al~~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~ 256 (930)
|+++.+|+.+|||+++++|+||+||||+|++.+. .....+|+|+|+||||||+|++.+. .|.+.|++
T Consensus 159 r~at~~A~~iaGl~vlrii~EPtAaalAygl~k~-~~~~~~VlI~DlGggtfdvs~l~i~------------gG~~~vka 225 (620)
T KOG0101|consen 159 RAATKDAALIAGLNVLRIINEPTAAALAYGLDKK-VLGERNVLIFDLGGGTFDVSVLSLE------------GGIFEVKA 225 (620)
T ss_pred HHHHHHHHHhcCCceeeeecchHHHHHHhhcccc-ccceeeEEEEEcCCCceeeeeEEec------------cchhhhhh
Confidence 9999999999999999999999999999998876 3456899999999999999999653 56889999
Q ss_pred ecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCCcccEEEeecccCcccEEEecH
Q 002363 257 VRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITR 336 (930)
Q Consensus 257 ~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~ItR 336 (930)
+.+|.++||.+||+.|++|++.+|+.+ ++.++..++++++||+.+||++|+.||....+.+.|++|+++.||...|||
T Consensus 226 t~gd~~lGGedf~~~l~~h~~~ef~~k--~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itr 303 (620)
T KOG0101|consen 226 TAGDTHLGGEDFDNKLVNHFAAEFKRK--AGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITR 303 (620)
T ss_pred hcccccccchhhhHHHHHHHHHHHHHh--hccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeeh
Confidence 999999999999999999999999999 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhh
Q 002363 337 QKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAAN 416 (930)
Q Consensus 337 ~efe~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ 416 (930)
.+||.+|.+++.++..++..+|+++++...+|+.|+||||++|+|.||..|+++|+.+.+...+||||+||+|||++||.
T Consensus 304 arfe~l~~dlf~~~~~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~ 383 (620)
T KOG0101|consen 304 ARFEELNADLFRSTLEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAI 383 (620)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred hcCC--ccccCceeEEeecccceeeeecCCcccCCCCceeEEEeCCCCCCcceeEeeeecc----cEEEEEEeecCCCCC
Q 002363 417 LSDG--IKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLP 490 (930)
Q Consensus 417 ls~~--~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~----~~~i~~~y~~~~~~~ 490 (930)
+++. ..+ .++.+.|+.|.++||+..++.+. ++|++++.+|++++.+|++.. .+.|.+ |++++.+.
T Consensus 384 ~~g~~~~~~-~~l~lid~~pl~~gve~a~~~~~-------~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~V-yEger~~~ 454 (620)
T KOG0101|consen 384 LSGDKSLNI-QDLLLIDVAPLSLGVETAGGVFT-------VLIPRNTSIPTKKTQTFTTYSDNQPGVLIQV-YEGERAMT 454 (620)
T ss_pred ccCCccccc-cceeeeecccccccccccCCcce-------eeeecccccceeeeeeeeeecCCCCceeEEE-Eecccccc
Confidence 9974 345 78999999999999999988764 899999999999999998764 478888 99998877
Q ss_pred CCCCCCceeEEEEcCCccchhhhccCCCCCCceeEEEEEEccCcceEEeeeeeEEEEEEeeecCccccccccccCCCCCC
Q 002363 491 PGATSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNI 570 (930)
Q Consensus 491 ~~~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~a~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 570 (930)
. ++..+|.|.+.||++++ + ++| .|.++|.+|.+|+|.|+..+...
T Consensus 455 k--dn~~lg~feL~gippap-----r--gvp-~IevtfdiD~ngiL~Vta~d~st------------------------- 499 (620)
T KOG0101|consen 455 K--DNNLLGKFELTGIPPAP-----R--GVP-QIEVTFDIDANGILNVTAVDKST------------------------- 499 (620)
T ss_pred c--cccccceeeecCCCccc-----c--CCc-ceeEEEecCCCcEEEEeeccccC-------------------------
Confidence 6 68889999999999986 3 377 99999999999999887654210
Q ss_pred chhhhhhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCchhhhhhhccccceeeeeeEEEeeccCCCCCCCHH
Q 002363 571 SAETAAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKE 650 (930)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~l~~~~~~~~~~~~ls~~ 650 (930)
.++ -.|.+++ ....||++
T Consensus 500 ------------gK~----------------------------------------------~~i~i~n----~~grls~~ 517 (620)
T KOG0101|consen 500 ------------GKE----------------------------------------------NKITITN----DKGRLSKE 517 (620)
T ss_pred ------------Ccc----------------------------------------------ceEEEec----ccceeehh
Confidence 000 0234432 12369999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhhccCcccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCCHHH
Q 002363 651 ALVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKE 730 (930)
Q Consensus 651 ~l~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iY~~r~~l~~~~~~~~~~~~~er~~l~~~l~e~~~WL~~~g~~a~~~~ 730 (930)
+++++....+.+...|...+.+..++|.||+|+|+++..+++.. ..+.++++.++..++.++..||..+ ..+.+++
T Consensus 518 ~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~---~~i~~~~~~~~~~~~~~~i~wl~~~-~~~~~~e 593 (620)
T KOG0101|consen 518 EIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDEK---GKINEEDKQKILDKCNEVINWLDKN-QLAEKEE 593 (620)
T ss_pred hhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhhc---cccChhhhhhHHHHHHHHHHHhhhc-ccccccH
Confidence 99999999999999999999999999999999999999998752 7889999999999999999999988 6677999
Q ss_pred HHHHHHHHHhccchHHHhHHhh
Q 002363 731 FQERLDVLKAIGDPVFFRFKEL 752 (930)
Q Consensus 731 ~~~kl~~L~~~~~pi~~R~~e~ 752 (930)
|++|..+|+..+.||..+++..
T Consensus 594 ~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 594 FEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred HHHHHHHHHhhccHHHHhhhcc
Confidence 9999999999999999987654
No 17
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.7e-81 Score=742.13 Aligned_cols=556 Identities=21% Similarity=0.316 Sum_probs=463.6
Q ss_pred ccEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEeCCcEEEcHhHHhhHhhCccchHhHhhhhhCCCch
Q 002363 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKPFK 103 (930)
Q Consensus 24 ~~vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~ 103 (930)
..+||||||||||+||++ ..| .++|+.|..|+|.+||+|+|.++++++|..| +++++|||||+++.
T Consensus 19 ~~viGIDlGTT~S~va~~--~~~--~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~ 84 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIA--TNR--KVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLK 84 (595)
T ss_pred ceEEEEEcCcccEEEEEE--eCC--eeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCch
Confidence 359999999999999998 544 6789999999999999999998889999987 79999999999764
Q ss_pred hhHhhHhhcCCCceEEECCCCceEEEeCCCceecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHHHH
Q 002363 104 QVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA 183 (930)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~A 183 (930)
+.............+....++.+.+.+. +..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 85 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~-~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~A 163 (595)
T PRK01433 85 EILNTPALFSLVKDYLDVNSSELKLNFA-NKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLA 163 (595)
T ss_pred hhccchhhHhhhhheeecCCCeeEEEEC-CEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 3211000000111122223445566664 478999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCCc
Q 002363 184 AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAEL 263 (930)
Q Consensus 184 a~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~l 263 (930)
|++|||++++||+||+|||++|++.+ ....++|||||||||||+||+++. .+.++|++++||.+|
T Consensus 164 a~~AGl~v~~li~EPtAAAlay~~~~---~~~~~vlV~DlGGGT~DvSi~~~~------------~~~~~V~at~gd~~l 228 (595)
T PRK01433 164 AKIAGFEVLRLIAEPTAAAYAYGLNK---NQKGCYLVYDLGGGTFDVSILNIQ------------EGIFQVIATNGDNML 228 (595)
T ss_pred HHHcCCCEEEEecCcHHHHHHHhccc---CCCCEEEEEECCCCcEEEEEEEEe------------CCeEEEEEEcCCccc
Confidence 99999999999999999999999865 234689999999999999999875 678999999999999
Q ss_pred chHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCCcccEEEeecccCcccEEEecHHHHHHHH
Q 002363 264 GGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELC 343 (930)
Q Consensus 264 GG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~ItR~efe~l~ 343 (930)
||++||.+|++|+..+|... .+.+ .++.||++|+.||.+....+ ..++|||++|+++|
T Consensus 229 GG~d~D~~l~~~~~~~~~~~--------~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~ 286 (595)
T PRK01433 229 GGNDIDVVITQYLCNKFDLP--------NSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLI 286 (595)
T ss_pred ChHHHHHHHHHHHHHhcCCC--------CCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHH
Confidence 99999999999999887432 1222 23459999999998775321 16799999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhhcCCccc
Q 002363 344 EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGIKL 423 (930)
Q Consensus 344 ~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls~~~~~ 423 (930)
+++++++..+|+++|++++ ..+|+.|+||||+||+|+|++.|.++||. ++..++|||+|||+|||++|+++++.+
T Consensus 287 ~~l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~-~~~~~~npdeaVA~GAAi~a~~l~~~~-- 361 (595)
T PRK01433 287 LPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKV-DILSDIDPDKAVVWGAALQAENLIAPH-- 361 (595)
T ss_pred HHHHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCC-CceecCCchHHHHHHHHHHHHHhhCCc--
Confidence 9999999999999999998 57899999999999999999999999986 567789999999999999999998754
Q ss_pred cCceeEEeecccceeeeecCCcccCCCCceeEEEeCCCCCCcceeEeeeec----ccEEEEEEeecCCCCCCCCCCCcee
Q 002363 424 NRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHA----KDFEVSLAYESEDLLPPGATSPVFA 499 (930)
Q Consensus 424 ~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~----~~~~i~~~y~~~~~~~~~~~~~~i~ 499 (930)
+++.+.|++|++|||++.++.+ .+|||+|++||++++..|++. ..+.|.+ |+|++.++. +|..||
T Consensus 362 -~~~~l~Dv~p~slgi~~~~g~~-------~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v-~qGe~~~~~--~n~~lg 430 (595)
T PRK01433 362 -TNSLLIDVVPLSLGMELYGGIV-------EKIIMRNTPIPISVVKEFTTYADNQTGIQFHI-LQGEREMAA--DCRSLA 430 (595)
T ss_pred -cceEEEEecccceEEEecCCEE-------EEEEECCCcccceeeEEeEeecCCCeEEEEEE-EeccccccC--CCcEEE
Confidence 5789999999999999987654 389999999999999988764 3578888 999988876 688999
Q ss_pred EEEEcCCccchhhhccCCCCCCceeEEEEEEccCcceEEeeeeeEEEEEEeeecCccccccccccCCCCCCchhhhhhcc
Q 002363 500 KYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAETAAQNM 579 (930)
Q Consensus 500 ~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~a~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (930)
+|.|.|+++++. | .+ +|+|+|++|.||+|+|...+... .
T Consensus 431 ~~~l~~i~~~~~-----g--~~-~i~vtf~id~~Gil~V~a~~~~t---------------------~------------ 469 (595)
T PRK01433 431 RFELKGLPPMKA-----G--SI-RAEVTFAIDADGILSVSAYEKIS---------------------N------------ 469 (595)
T ss_pred EEEEcCCCCCCC-----C--Cc-cEEEEEEECCCCcEEEEEEEcCC---------------------C------------
Confidence 999999998752 3 34 89999999999999887553100 0
Q ss_pred ccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCchhhhhhhccccceeeeeeEEEeeccCCCCCCCHHHHHHHHHHH
Q 002363 580 TVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDAEAKL 659 (930)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~l~~~~~~~~~~~~ls~~~l~~~~~~l 659 (930)
++ ..+.+.. ...|++++++++.+..
T Consensus 470 ----------------------------------------------~~----~~~~i~~-----~~~ls~~ei~~~~~~~ 494 (595)
T PRK01433 470 ----------------------------------------------TS----HAIEVKP-----NHGIDKTEIDIMLENA 494 (595)
T ss_pred ----------------------------------------------cE----EEEEecC-----CCCCCHHHHHHHHHHH
Confidence 00 1233321 1249999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHhhccCcccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 002363 660 EELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDVLK 739 (930)
Q Consensus 660 ~~~~~~D~~~~~~~eakN~LEs~iY~~r~~l~~~~~~~~~~~~~er~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~ 739 (930)
.++...|..++++.+++|.+|+++|.++..+++ +....++++|+.+...+++.++||..+ +...+.+++++|+
T Consensus 495 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~i~~~~~~~~~~l~~~----~~~~~~~~~~~~~ 567 (595)
T PRK01433 495 YKNAKIDYTTRLLQEAVIEAEALIFNIERAIAE---LTTLLSESEISIINSLLDNIKEAVHAR----DIILINNSIKEFK 567 (595)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Confidence 999999999999999999999999999999964 455678999999999999999999743 5667888888888
Q ss_pred hccch-HHHhHH
Q 002363 740 AIGDP-VFFRFK 750 (930)
Q Consensus 740 ~~~~p-i~~R~~ 750 (930)
....+ +..|++
T Consensus 568 ~~~~~~~~~~~~ 579 (595)
T PRK01433 568 SKIKKSMDTKLN 579 (595)
T ss_pred HHHHHHHHHHhh
Confidence 77777 555543
No 18
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-81 Score=681.02 Aligned_cols=593 Identities=26% Similarity=0.447 Sum_probs=526.3
Q ss_pred CCCccEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEE-eCCcEEEcHhHHhhHhhCccchHhHhhhhhC
Q 002363 21 HSQSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAF-HESTRLLGEEASGIIARYPHRVYSQLRDMIG 99 (930)
Q Consensus 21 ~~~~~vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~-~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG 99 (930)
.....|+|||+||||+++|++ ..+ .| .++.|.+|.|.+||+|+| .++++++|..|+.++..||.++++.-|||||
T Consensus 24 ~~~~~vigidlgttnS~va~m--eg~-~~-kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrlig 99 (640)
T KOG0102|consen 24 KVKGKVIGIDLGTTNSCVAVM--EGK-KP-KIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIG 99 (640)
T ss_pred CCCCceeeEeeeccceeEEEE--eCC-Cc-eEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhh
Confidence 456789999999999999999 433 44 599999999999999999 5679999999999999999999999999999
Q ss_pred CCchhhHhhHhhcCCCceEEECCCCceEEEeCCCceecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHH
Q 002363 100 KPFKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKG 179 (930)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~a 179 (930)
+.+.+..........||+++...||.++++. .|..++|.++.+++|.+++.+|+.+++..+..+|+|||+||++.||++
T Consensus 100 Rrf~d~evq~~~k~vpyKiVk~~ngdaw~e~-~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqa 178 (640)
T KOG0102|consen 100 RRFDDPEVQKDIKQVPYKIVKASNGDAWVEA-RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQA 178 (640)
T ss_pred hhccCHHHHHHHHhCCcceEEccCCcEEEEe-CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHH
Confidence 9877666666667899999998899999999 678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecC
Q 002363 180 LMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRW 259 (930)
Q Consensus 180 l~~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~ 259 (930)
+++|.++||+++++.||||||||++|++++.. ...++|||+||||||++|+.+ .++.|+|+++.|
T Consensus 179 Tkdag~iagl~vlrvineptaaalaygld~k~---~g~iaV~dLgggtfdisilei------------~~gvfevksTng 243 (640)
T KOG0102|consen 179 TKDAGQIAGLNVLRVINEPTAAALAYGLDKKE---DGVIAVFDLGGGTFDISILEI------------EDGVFEVKSTNG 243 (640)
T ss_pred hHhhhhhccceeeccCCccchhHHhhcccccC---CCceEEEEcCCceeeeeeehh------------ccceeEEEeccC
Confidence 99999999999999999999999999998732 578999999999999999965 489999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCCcccEEEeecccC----cccEEEec
Q 002363 260 DAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVD----IDFRSSIT 335 (930)
Q Consensus 260 d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~i~ie~l~~~----~d~~~~It 335 (930)
|.++||.+||..+++|+..+|+.. .++|+..+++++.||+.++|++|..||....+.++++.+..+ ..+++++|
T Consensus 244 dtflggedfd~~~~~~~v~~fk~~--~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~t 321 (640)
T KOG0102|consen 244 DTHLGGEDFDNALVRFIVSEFKKE--EGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELT 321 (640)
T ss_pred ccccChhHHHHHHHHHHHHhhhcc--cCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeec
Confidence 999999999999999999999988 889999999999999999999999999999999999988766 67899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHh
Q 002363 336 RQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAA 415 (930)
Q Consensus 336 R~efe~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa 415 (930)
|.+||+++.++++|.+.|+.++|++|++..+||+.|+||||.+|+|+|++.|.++||+ ..+..+||||+||.|||+++.
T Consensus 322 r~efe~~v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk-~p~~~vnPdeava~GAaiqgg 400 (640)
T KOG0102|consen 322 RGEFEELVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGK-GPSKGVNPDEAVAGGAAIQGG 400 (640)
T ss_pred HHHHHHhhHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCC-CCCCCcCCcchhccchhhccc
Confidence 9999999999999999999999999999999999999999999999999999999997 668999999999999999999
Q ss_pred hhcCCccccCceeEEeecccceeeeecCCcccCCCCceeEEEeCCCCCCcceeEeeeec----ccEEEEEEeecCCCCCC
Q 002363 416 NLSDGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHA----KDFEVSLAYESEDLLPP 491 (930)
Q Consensus 416 ~ls~~~~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~----~~~~i~~~y~~~~~~~~ 491 (930)
.|++.. +++.+.|++|.++||+.-++-+. .|+|+++.||++++..|.+. ..+.|.+ +++++.+..
T Consensus 401 vl~geV---kdvlLLdVtpLsLgietlggvft-------~Li~rnttIptkksqvfstaadgqt~V~ikv-~qgere~~~ 469 (640)
T KOG0102|consen 401 VLSGEV---KDVLLLDVTPLSLGIETLGGVFT-------KLIPRNTTIPTKKSQVFSTAADGQTQVEIKV-FQGEREMVN 469 (640)
T ss_pred hhhccc---cceeeeecchHHHHHHhhhhhhe-------ecccCCcccCchhhhheeecccCCceEEEEe-eechhhhhc
Confidence 999854 88999999999999999888764 89999999999999999875 3588888 899988876
Q ss_pred CCCCCceeEEEEcCCccchhhhccCCCCCCceeEEEEEEccCcceEEeeeeeEEEEEEeeecCccccccccccCCCCCCc
Q 002363 492 GATSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNIS 571 (930)
Q Consensus 492 ~~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~a~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (930)
+|+.+|+|.+.||++++ +| .| .|.|+|.+|.+||++|+..+-.
T Consensus 470 --dnk~lG~f~l~gipp~p-----Rg--vp-qieVtfDIdanGI~~vsA~dk~--------------------------- 512 (640)
T KOG0102|consen 470 --DNKLLGSFILQGIPPAP-----RG--VP-QIEVTFDIDANGIGTVSAKDKG--------------------------- 512 (640)
T ss_pred --cCcccceeeecccCCCC-----CC--CC-ceeEEEeecCCceeeeehhhcc---------------------------
Confidence 69999999999999996 34 67 8999999999999987654310
Q ss_pred hhhhhhccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCchhhhhhhccccceeeeeeEEEeeccCCCCCCCHHH
Q 002363 572 AETAAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEA 651 (930)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~l~~~~~~~~~~~~ls~~~ 651 (930)
+ + |. -.+++.. ...||+++
T Consensus 513 ----t--------~----------------------------------------K~----qsi~i~~-----sggLs~~e 531 (640)
T KOG0102|consen 513 ----T--------G----------------------------------------KS----QSITIAS-----SGGLSKDE 531 (640)
T ss_pred ----c--------C----------------------------------------Cc----cceEEee-----cCCCCHHH
Confidence 0 0 00 0344431 12499999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhhccCcccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCCHHHH
Q 002363 652 LVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEF 731 (930)
Q Consensus 652 l~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iY~~r~~l~~~~~~~~~~~~~er~~l~~~l~e~~~WL~~~g~~a~~~~~ 731 (930)
++.+....+.+...|+.++++.+..|..|+++|+....+.. |.+..+-++...|...+....+.+-.- ...+.++.
T Consensus 532 i~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~---~~~~~~~~~~~~i~~~i~~l~~~~~~~-~~~~~~~~ 607 (640)
T KOG0102|consen 532 IELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKE---FEEKIPAEECEKLEEKISDLRELVANK-DSGDMEEI 607 (640)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhhh---hhhhCcHHHHHHHHHHHHHHHHHHhhh-ccCChhhH
Confidence 99999999999999999999999999999999999999874 777788888888988888888877432 22233677
Q ss_pred HHHHHHHHhccchHHHhH
Q 002363 732 QERLDVLKAIGDPVFFRF 749 (930)
Q Consensus 732 ~~kl~~L~~~~~pi~~R~ 749 (930)
..+...|+....|++.-+
T Consensus 608 k~~~~~l~q~~lkl~es~ 625 (640)
T KOG0102|consen 608 KKAMSALQQASLKLFESA 625 (640)
T ss_pred HHHHHHHHHhhhHHHHHH
Confidence 777777777666665533
No 19
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-79 Score=720.41 Aligned_cols=569 Identities=27% Similarity=0.444 Sum_probs=506.7
Q ss_pred CccEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEeCC-cEEEcHhHHhhHhhCccchHhHhhhhhCCC
Q 002363 23 QSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHES-TRLLGEEASGIIARYPHRVYSQLRDMIGKP 101 (930)
Q Consensus 23 ~~~vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~~~-~~~~G~~A~~~~~~~p~~~~~~~K~llG~~ 101 (930)
.+.+||||||||||+||++ .+++ .+.++.|..|.|.+||+|+|... ++++|..|+.++..+|.+++..+||++|+.
T Consensus 4 ~~~~iGIDlGTTNS~vA~~--~~~~-~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~ 80 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVM--RGGG-LPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRG 80 (579)
T ss_pred CceEEEEEcCCCcEEEEEE--eCCC-CceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCC
Confidence 4569999999999999999 5552 57899999999999999999855 699999999999999999999999999986
Q ss_pred chhhHhhHhhcCCCceEEECCCCceEEEeCCCceecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHH
Q 002363 102 FKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLM 181 (930)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~ 181 (930)
.. ...+.+.+. ++.++|++|++++|.+|++.|+.+++..+.++|||||+||++.||++++
T Consensus 81 ~~-------------------~~~~~~~~~-~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~ 140 (579)
T COG0443 81 SN-------------------GLKISVEVD-GKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATK 140 (579)
T ss_pred CC-------------------CCcceeeeC-CeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHH
Confidence 11 001233343 3689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCC
Q 002363 182 QAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDA 261 (930)
Q Consensus 182 ~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~ 261 (930)
+|+++|||++++|||||+|||++|+..+. .+.+|||||+||||||+||+++. .+.++|++++||.
T Consensus 141 ~A~~iaGl~vlrlinEPtAAAlayg~~~~---~~~~vlV~DlGGGTfDvSll~~~------------~g~~ev~at~gd~ 205 (579)
T COG0443 141 DAARIAGLNVLRLINEPTAAALAYGLDKG---KEKTVLVYDLGGGTFDVSLLEIG------------DGVFEVLATGGDN 205 (579)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhHhccC---CCcEEEEEEcCCCCEEEEEEEEc------------CCEEEEeecCCCc
Confidence 99999999999999999999999999874 56899999999999999999874 5699999999999
Q ss_pred CcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCCcccEEEeecccCcccEEEecHHHHHH
Q 002363 262 ELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEE 341 (930)
Q Consensus 262 ~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~ItR~efe~ 341 (930)
+|||.+||.+|.+|+..+|..+ ++.++..++.+++||+.+|+++|+.||...++.++++.+..+.++..+|||++||.
T Consensus 206 ~LGGddfD~~l~~~~~~~f~~~--~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~ 283 (579)
T COG0443 206 HLGGDDFDNALIDYLVMEFKGK--GGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEE 283 (579)
T ss_pred ccCchhHHHHHHHHHHHHhhcc--CCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHH
Confidence 9999999999999999999998 77999999999999999999999999999999999998888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhhcCCc
Q 002363 342 LCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (930)
Q Consensus 342 l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls~~~ 421 (930)
++.+++.++..++.++|.+++++..+|+.|+||||++|||.|++.|.++|| +.+.+.+||||+||.|||++|+.+++..
T Consensus 284 l~~dll~r~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~inpdeava~GAa~qa~~l~~~~ 362 (579)
T COG0443 284 LILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPDEAVALGAAIQAAVLSGEV 362 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhC-ccccccCCccHHHHHHHHHHHHhhcCcc
Confidence 999999999999999999999999999999999999999999999999999 5788999999999999999999999866
Q ss_pred cccCceeEEeecccceeeeecCCcccCCCCceeEEEeCCCCCCcceeEeeeecc----cEEEEEEeecCCCCCCCCCCCc
Q 002363 422 KLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLPPGATSPV 497 (930)
Q Consensus 422 ~~~~~~~i~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~----~~~i~~~y~~~~~~~~~~~~~~ 497 (930)
+++.+.|++|+++|+++.++.+. .++++++.+|.++...|.+.. .+.+.+ |++++.+.. ++..
T Consensus 363 ---~d~ll~Dv~plslgie~~~~~~~-------~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v-~qge~~~~~--~~~~ 429 (579)
T COG0443 363 ---PDVLLLDVIPLSLGIETLGGVRT-------PIIERNTTIPVKKSQEFSTAADGQTAVAIHV-FQGEREMAA--DNKS 429 (579)
T ss_pred ---cCceEEeeeeeccccccCcchhh-------hHHhcCCCCCcccceEEEeecCCCceeEEEE-Eecchhhcc--cCce
Confidence 37889999999999998886543 799999999999998897754 477777 899987766 5899
Q ss_pred eeEEEEcCCccchhhhccCCCCCCceeEEEEEEccCcceEEeeeeeEEEEEEeeecCccccccccccCCCCCCchhhhhh
Q 002363 498 FAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAETAAQ 577 (930)
Q Consensus 498 i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~a~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (930)
+|.|.+.++++++. +.| .|.|+|.+|.||++.|+..+... .
T Consensus 430 lg~f~l~~i~~~~~-------g~~-~i~v~f~iD~~gi~~v~a~~~~~---------------------~---------- 470 (579)
T COG0443 430 LGRFELDGIPPAPR-------GVP-QIEVTFDIDANGILNVTAKDLGT---------------------G---------- 470 (579)
T ss_pred eEEEECCCCCCCCC-------CCC-ceEEEeccCCCcceEeeeecccC---------------------C----------
Confidence 99999999998863 356 79999999999999876532100 0
Q ss_pred ccccccccccccCCCCCCCCCchhhhhhcCCCCCCCCCchhhhhhhccccceeeeeeEEEeeccCCCCCCCHHHHHHHHH
Q 002363 578 NMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDAEA 657 (930)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~l~~~~~~~~~~~~ls~~~l~~~~~ 657 (930)
+. -.+.+. .... |++++++.+.+
T Consensus 471 --------------------------------------------------k~--~~i~i~----~~~~-ls~~~i~~~~~ 493 (579)
T COG0443 471 --------------------------------------------------KE--QSITIK----ASSG-LSDEEIERMVE 493 (579)
T ss_pred --------------------------------------------------ce--EEEEEe----cCCC-CCHHHHHHHHH
Confidence 00 123433 1123 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhhccCcccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 002363 658 KLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDV 737 (930)
Q Consensus 658 ~l~~~~~~D~~~~~~~eakN~LEs~iY~~r~~l~~~~~~~~~~~~~er~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~~ 737 (930)
....+...|+..++..+.+|..++++|.++..|.+. . .+.+++++.+...+.+++.||+.+ .++++.+.++
T Consensus 494 ~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~---~-~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~ 564 (579)
T COG0443 494 DAEANAALDKKFRELVEARNEAESLIYSLEKALKEI---V-KVSEEEKEKIEEAITDLEEALEGE-----KEEIKAKIEE 564 (579)
T ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhh---c-cCCHHHHHHHHHHHHHHHHHHhcc-----HHHHHHHHHH
Confidence 999999999999999999999999999999999864 3 789999999999999999999972 8899999999
Q ss_pred HHhccchHHHhHH
Q 002363 738 LKAIGDPVFFRFK 750 (930)
Q Consensus 738 L~~~~~pi~~R~~ 750 (930)
|+....++..++.
T Consensus 565 l~~~~~~~~~~~~ 577 (579)
T COG0443 565 LQEVTQKLAEKKY 577 (579)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988877654
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=3.5e-53 Score=484.69 Aligned_cols=345 Identities=19% Similarity=0.245 Sum_probs=288.3
Q ss_pred EEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEe------------------------------------
Q 002363 26 VSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFH------------------------------------ 69 (930)
Q Consensus 26 vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~------------------------------------ 69 (930)
++|||||||||+||++ .+| .++++.+..|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~--~~~--~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T PRK11678 2 FIGFDYGTANCSVAVM--RDG--KPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREE 77 (450)
T ss_pred eEEEecCccceeeEEe--eCC--ceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccc
Confidence 6899999999999999 655 468889999999999999993
Q ss_pred -----CCcEEEcHhHHhhHhhCccch--HhHhhhhhCCCchhhHhhHhhcCCCceEEECCCCceEEEeCCCceecHHHHH
Q 002363 70 -----ESTRLLGEEASGIIARYPHRV--YSQLRDMIGKPFKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELL 142 (930)
Q Consensus 70 -----~~~~~~G~~A~~~~~~~p~~~--~~~~K~llG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~ 142 (930)
++..++|..|......+|..+ +..+|++||...-. .+....+++++
T Consensus 78 ~~~~~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~---------------------------~~~~~~~e~l~ 130 (450)
T PRK11678 78 DIDVTAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLK---------------------------PQQVALFEDLV 130 (450)
T ss_pred cccccccccchhHHHHHhhccCCCCceEEecchhhhccCCCC---------------------------ccceeCHHHHH
Confidence 456789999999999999988 77999999974200 01224489999
Q ss_pred HHHHHHHHHHHHHhccCccccEEEeeCCCCC-----HHHHHH---HHHHHHHcCCCeeEEechhhHHHHHhccccCCCCC
Q 002363 143 AMVLSYAVNLVDTHAKLAVKDFVISVPPYFG-----QAERKG---LMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNE 214 (930)
Q Consensus 143 a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~-----~~qR~a---l~~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~ 214 (930)
+++|++|++.++.+++.++.++|||||++|+ +.||++ +.+||+.|||++++|++||+|||++|+... ..
T Consensus 131 a~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~---~~ 207 (450)
T PRK11678 131 CAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATL---TE 207 (450)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhcccc---CC
Confidence 9999999999999999999999999999998 788776 799999999999999999999999998754 34
Q ss_pred CcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCCcchHHHHHHHH-HHHHHHHhhh--cCCCCCC-
Q 002363 215 SRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLV-EYFADEFNKQ--VGNGVDV- 290 (930)
Q Consensus 215 ~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~-~~l~~~f~~~--~~~~~d~- 290 (930)
+..+|||||||||+|+||+++..... .......+|++++|+ .+||+|||..|+ +++...|... ..++.++
T Consensus 208 ~~~vlV~D~GGGT~D~Svv~~~~~~~-----~~~~r~~~vla~~G~-~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p 281 (450)
T PRK11678 208 EKRVLVVDIGGGTTDCSMLLMGPSWR-----GRADRSASLLGHSGQ-RIGGNDLDIALAFKQLMPLLGMGSETEKGIALP 281 (450)
T ss_pred CCeEEEEEeCCCeEEEEEEEecCccc-----ccCCcceeEEecCCC-CCChHHHHHHHHHHHHHHHhhhchhhccCCcCc
Confidence 68999999999999999999853210 112345789999985 799999999998 6888887521 0011110
Q ss_pred ----------------------------------CCcHHHH------------HHHHHHHHHHhhhhcCCCcccEEEeec
Q 002363 291 ----------------------------------RKSPKAM------------AKLKKQVKRTKEILSANTMAPISVESL 324 (930)
Q Consensus 291 ----------------------------------~~~~~~~------------~kL~~~aek~K~~LS~~~~~~i~ie~l 324 (930)
..+|+.+ .+|+.+||++|+.||.+.++.+.++.+
T Consensus 282 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~ 361 (450)
T PRK11678 282 SLPFWNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFI 361 (450)
T ss_pred chhhhhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEeccc
Confidence 0123333 378899999999999999999999866
Q ss_pred ccCcccEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcch
Q 002363 325 YVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADE 404 (930)
Q Consensus 325 ~~~~d~~~~ItR~efe~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~de 404 (930)
. .++...|||++|+++|+++++++..+|+++|+.+++. ++.|+||||+||+|.|++.|.+.||..++ ...++.+
T Consensus 362 ~--~~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v-~~g~~~~ 435 (450)
T PRK11678 362 S--DGLATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPI-VGGDDFG 435 (450)
T ss_pred C--CCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcE-EeCCCcc
Confidence 4 4578899999999999999999999999999999976 47899999999999999999999997555 4669999
Q ss_pred hhhcccHHHHhh
Q 002363 405 AIVLGASLLAAN 416 (930)
Q Consensus 405 aVa~GAa~~aa~ 416 (930)
+||.|+|++|..
T Consensus 436 sVa~Gla~~a~~ 447 (450)
T PRK11678 436 SVTAGLARWAQV 447 (450)
T ss_pred hHHHHHHHHHHh
Confidence 999999999985
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=8.8e-37 Score=341.82 Aligned_cols=308 Identities=19% Similarity=0.305 Sum_probs=235.5
Q ss_pred EEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEeCC--c-EEEcHhHHhhHhhCccchHhHhhhhhCCCch
Q 002363 27 SSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHES--T-RLLGEEASGIIARYPHRVYSQLRDMIGKPFK 103 (930)
Q Consensus 27 vGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~~~--~-~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~ 103 (930)
+||||||+|++|+.. + .++ ++. .||+|+|... . ..+|.+|..+..+.|.+....
T Consensus 6 ~gIDlGt~~~~i~~~----~-~~~-v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~---------- 62 (336)
T PRK13928 6 IGIDLGTANVLVYVK----G-KGI-VLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI---------- 62 (336)
T ss_pred eEEEcccccEEEEEC----C-CCE-EEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE----------
Confidence 899999999999875 3 222 332 5999999843 3 368999987766655543210
Q ss_pred hhHhhHhhcCCCceEEECCCCceEEEeCCCceecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHHHH
Q 002363 104 QVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA 183 (930)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~A 183 (930)
.| +.+| .+...++...+|+|+.+.+..........+|||||++|+..||+++.+|
T Consensus 63 ----------~p--------------i~~G-~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a 117 (336)
T PRK13928 63 ----------RP--------------LRDG-VIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREA 117 (336)
T ss_pred ----------cc--------------CCCC-eEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 01 1112 2333356677777777554332222233699999999999999999999
Q ss_pred HHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCCc
Q 002363 184 AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAEL 263 (930)
Q Consensus 184 a~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~l 263 (930)
++.||++++.|++||+|||++|+... ..+..++|||+||||||++++++. +.+ ..++..+
T Consensus 118 ~~~ag~~~~~li~ep~Aaa~~~g~~~---~~~~~~lVvDiGggttdvsvv~~g-------------~~~----~~~~~~l 177 (336)
T PRK13928 118 AEQAGAKKVYLIEEPLAAAIGAGLDI---SQPSGNMVVDIGGGTTDIAVLSLG-------------GIV----TSSSIKV 177 (336)
T ss_pred HHHcCCCceEecccHHHHHHHcCCcc---cCCCeEEEEEeCCCeEEEEEEEeC-------------CEE----EeCCcCC
Confidence 99999999999999999999998854 245779999999999999999752 111 2356799
Q ss_pred chHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCC----cccEEEe--ecccCcccEEEecHH
Q 002363 264 GGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANT----MAPISVE--SLYVDIDFRSSITRQ 337 (930)
Q Consensus 264 GG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~----~~~i~ie--~l~~~~d~~~~ItR~ 337 (930)
||.+||..|++++..+|... +. ...||++|+.++... ...+.+. .+..+.++.+.|+|+
T Consensus 178 GG~did~~i~~~l~~~~~~~------~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~ 242 (336)
T PRK13928 178 AGDKFDEAIIRYIRKKYKLL------IG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSE 242 (336)
T ss_pred HHHHHHHHHHHHHHHHhchh------cC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHH
Confidence 99999999999999776422 11 257999999886431 1233332 344566778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC--CCcCCcc-EEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHH
Q 002363 338 KFEELCEDLWERSLVPLREVLNYSG--LKMDEIY-AVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLA 414 (930)
Q Consensus 338 efe~l~~~~~~~i~~~i~~~L~~a~--~~~~~I~-~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~a 414 (930)
+|++++.++++++..+|.++|+.++ +..+.++ .|+|+||+|++|.|++.|++.|+. ++....||++|||+|||+++
T Consensus 243 ~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~-~v~~~~~P~~ava~Gaa~~~ 321 (336)
T PRK13928 243 EIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKV-PVYIAEDPISCVALGTGKML 321 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCC-CceecCCHHHHHHHHHHHHH
Confidence 9999999999999999999999986 4556777 799999999999999999999986 66677899999999999998
Q ss_pred hhhc
Q 002363 415 ANLS 418 (930)
Q Consensus 415 a~ls 418 (930)
..+.
T Consensus 322 ~~~~ 325 (336)
T PRK13928 322 ENID 325 (336)
T ss_pred hchH
Confidence 8753
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=4.2e-36 Score=335.37 Aligned_cols=306 Identities=18% Similarity=0.286 Sum_probs=240.7
Q ss_pred cEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEeCC-c--EEEcHhHHhhHhhCccchHhHhhhhhCCC
Q 002363 25 AVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHES-T--RLLGEEASGIIARYPHRVYSQLRDMIGKP 101 (930)
Q Consensus 25 ~vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~~~-~--~~~G~~A~~~~~~~p~~~~~~~K~llG~~ 101 (930)
..+||||||+|+++ + ..+ .++ +.| .||+|+|... . ..+|.+|..+..++|.++... +
T Consensus 5 ~~~giDlGt~~~~i--~--~~~-~~~--~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~----- 64 (335)
T PRK13929 5 TEIGIDLGTANILV--Y--SKN-KGI--ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R----- 64 (335)
T ss_pred CeEEEEcccccEEE--E--ECC-CcE--Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e-----
Confidence 46999999999975 3 345 343 455 4999999743 2 479999999888888765331 0
Q ss_pred chhhHhhHhhcCCCceEEECCCCceEEEeCCCceecHHHHHHHHHHHHHHHHHHhccCccc--cEEEeeCCCCCHHHHHH
Q 002363 102 FKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVK--DFVISVPPYFGQAERKG 179 (930)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~~~--~~VItVPa~f~~~qR~a 179 (930)
| +.+|. +.--++++++|++++..++..++..+. .+|||||++|+..||++
T Consensus 65 -------------p--------------i~~G~-I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~ 116 (335)
T PRK13929 65 -------------P--------------MKDGV-IADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRA 116 (335)
T ss_pred -------------c--------------CCCCc-cCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHH
Confidence 1 11122 222278899999999988877776554 79999999999999999
Q ss_pred HHHHHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecC
Q 002363 180 LMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRW 259 (930)
Q Consensus 180 l~~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~ 259 (930)
+.+|++.||++++.|++||+|||++|+... .++..++|||+||||||++++.+. +.+ ..+
T Consensus 117 l~~a~~~ag~~~~~li~ep~Aaa~~~g~~~---~~~~~~lvvDiG~gtt~v~vi~~~-------------~~~----~~~ 176 (335)
T PRK13929 117 ISDAVKNCGAKNVHLIEEPVAAAIGADLPV---DEPVANVVVDIGGGTTEVAIISFG-------------GVV----SCH 176 (335)
T ss_pred HHHHHHHcCCCeeEeecCHHHHHHhcCCCc---CCCceEEEEEeCCCeEEEEEEEeC-------------CEE----Eec
Confidence 999999999999999999999999998754 345789999999999999999752 211 234
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCC----cccEEEe--ecccCcccEEE
Q 002363 260 DAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANT----MAPISVE--SLYVDIDFRSS 333 (930)
Q Consensus 260 d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~----~~~i~ie--~l~~~~d~~~~ 333 (930)
+..+||++||..|++++...+. .... ...||++|+.|+... ...+.+. ++..+....+.
T Consensus 177 ~~~~GG~~id~~l~~~l~~~~~------~~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~ 241 (335)
T PRK13929 177 SIRIGGDQLDEDIVSFVRKKYN------LLIG---------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTIT 241 (335)
T ss_pred CcCCHHHHHHHHHHHHHHHHhC------cCcC---------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEE
Confidence 5689999999999999987652 2221 257999999998631 2223332 23445667889
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cCCcc-EEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhccc
Q 002363 334 ITRQKFEELCEDLWERSLVPLREVLNYSGLK--MDEIY-AVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGA 410 (930)
Q Consensus 334 ItR~efe~l~~~~~~~i~~~i~~~L~~a~~~--~~~I~-~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GA 410 (930)
|+|++|+++|.+++.++...|.++|+.++.. .+.++ .|+|+||+|++|.+.+.|++.|+. ++....||+++|++||
T Consensus 242 i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~-~v~~~~~P~~~Va~Ga 320 (335)
T PRK13929 242 LESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVV-PVHVAANPLESVAIGT 320 (335)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCC-CceeCCCHHHHHHHHH
Confidence 9999999999999999999999999998643 35677 699999999999999999999986 6667789999999999
Q ss_pred HHHH
Q 002363 411 SLLA 414 (930)
Q Consensus 411 a~~a 414 (930)
+..-
T Consensus 321 ~~~~ 324 (335)
T PRK13929 321 GRSL 324 (335)
T ss_pred HHHH
Confidence 9774
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1.1e-33 Score=317.27 Aligned_cols=307 Identities=21% Similarity=0.297 Sum_probs=226.5
Q ss_pred cEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEeCC-c--EEEcHhHHhhHhhCccchHhHhhhhhCCC
Q 002363 25 AVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHES-T--RLLGEEASGIIARYPHRVYSQLRDMIGKP 101 (930)
Q Consensus 25 ~vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~~~-~--~~~G~~A~~~~~~~p~~~~~~~K~llG~~ 101 (930)
..|||||||++++++.. | .+. ++ .+||+|+|... + .++|.+|..+..+.|.++...
T Consensus 6 ~~igIDlGt~~~~i~~~----~-~~~-~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~-------- 64 (334)
T PRK13927 6 NDLGIDLGTANTLVYVK----G-KGI-VL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI-------- 64 (334)
T ss_pred ceeEEEcCcceEEEEEC----C-CcE-EE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE--------
Confidence 36999999999998543 4 233 22 27999999743 2 489999988766655542110
Q ss_pred chhhHhhHhhcCCCceEEECCCCceEEEeCCCceecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHH
Q 002363 102 FKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLM 181 (930)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~ 181 (930)
.| +.+|..... +.+..+|+++.......... ...+|||||++|+..||+++.
T Consensus 65 ------------~p--------------i~~G~i~d~-~~~~~ll~~~~~~~~~~~~~-~~~~vi~vP~~~~~~~r~~~~ 116 (334)
T PRK13927 65 ------------RP--------------MKDGVIADF-DVTEKMLKYFIKKVHKNFRP-SPRVVICVPSGITEVERRAVR 116 (334)
T ss_pred ------------ec--------------CCCCeecCH-HHHHHHHHHHHHHHhhccCC-CCcEEEEeCCCCCHHHHHHHH
Confidence 01 112211122 22344444444333222211 237999999999999999999
Q ss_pred HHHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCC
Q 002363 182 QAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDA 261 (930)
Q Consensus 182 ~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~ 261 (930)
+|++.||++.+.|++||+|||++|+... ..+..++|||+||||||++++++. +.+ ..++.
T Consensus 117 ~a~~~ag~~~~~li~ep~aaa~~~g~~~---~~~~~~lvvDiGggttdvs~v~~~-------------~~~----~~~~~ 176 (334)
T PRK13927 117 ESALGAGAREVYLIEEPMAAAIGAGLPV---TEPTGSMVVDIGGGTTEVAVISLG-------------GIV----YSKSV 176 (334)
T ss_pred HHHHHcCCCeeccCCChHHHHHHcCCcc---cCCCeEEEEEeCCCeEEEEEEecC-------------CeE----eeCCc
Confidence 9999999999999999999999998754 335678999999999999999652 111 23445
Q ss_pred CcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCCc----ccEEE--eecccCcccEEEec
Q 002363 262 ELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTM----APISV--ESLYVDIDFRSSIT 335 (930)
Q Consensus 262 ~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~----~~i~i--e~l~~~~d~~~~It 335 (930)
.+||++||+.|++++.++|.. ... ...||++|+.++.... ..+.+ +.+..+.++.+.|+
T Consensus 177 ~lGG~~id~~l~~~l~~~~~~------~~~---------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 241 (334)
T PRK13927 177 RVGGDKFDEAIINYVRRNYNL------LIG---------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITIS 241 (334)
T ss_pred CChHHHHHHHHHHHHHHHhCc------CcC---------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEEC
Confidence 799999999999999876531 111 2468999999874321 22333 33445667788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cCCcc-EEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHH
Q 002363 336 RQKFEELCEDLWERSLVPLREVLNYSGLK--MDEIY-AVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASL 412 (930)
Q Consensus 336 R~efe~l~~~~~~~i~~~i~~~L~~a~~~--~~~I~-~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~ 412 (930)
|++|++++.+.+.++..+|.++|+.++.. .+.++ .|+|+||+|++|.|++.|++.|+. ++....||+++||+||++
T Consensus 242 ~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~-~v~~~~~P~~ava~Ga~~ 320 (334)
T PRK13927 242 SNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGL-PVHVAEDPLTCVARGTGK 320 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCC-CcEecCCHHHHHHHHHHH
Confidence 99999999999999999999999998643 22334 599999999999999999999985 677788999999999999
Q ss_pred HHhh
Q 002363 413 LAAN 416 (930)
Q Consensus 413 ~aa~ 416 (930)
++..
T Consensus 321 ~~~~ 324 (334)
T PRK13927 321 ALEN 324 (334)
T ss_pred HHhh
Confidence 9875
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=4.8e-33 Score=311.45 Aligned_cols=307 Identities=20% Similarity=0.292 Sum_probs=223.1
Q ss_pred EEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEeCC-----c--EEEcHhHHhhHhhCccchHhHhhhhh
Q 002363 26 VSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHES-----T--RLLGEEASGIIARYPHRVYSQLRDMI 98 (930)
Q Consensus 26 vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~~~-----~--~~~G~~A~~~~~~~p~~~~~~~K~ll 98 (930)
-+||||||+||+++.. + .++ ++ ..||+|+|.++ . .++|.+|..++.+.|.++-. ++
T Consensus 4 ~~giDlGt~~s~i~~~----~-~~~-~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~~-- 66 (333)
T TIGR00904 4 DIGIDLGTANTLVYVK----G-RGI-VL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVA--IR-- 66 (333)
T ss_pred eeEEecCcceEEEEEC----C-CCE-EE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEE--Ee--
Confidence 3999999999998875 2 233 32 27999999733 3 67999998766555544210 11
Q ss_pred CCCchhhHhhHhhcCCCceEEECCCCceEEEeCCCceecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHH
Q 002363 99 GKPFKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERK 178 (930)
Q Consensus 99 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~ 178 (930)
| +.+|..... +.+..+++|+........+..-..+|||||++|+..||+
T Consensus 67 ----------------p--------------i~~G~i~d~-~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~ 115 (333)
T TIGR00904 67 ----------------P--------------MKDGVIADF-EVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERR 115 (333)
T ss_pred ----------------c--------------CCCCEEEcH-HHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHH
Confidence 1 111211122 223334444443332211111227999999999999999
Q ss_pred HHHHHHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEec
Q 002363 179 GLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVR 258 (930)
Q Consensus 179 al~~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~ 258 (930)
++.+|++.||++++.|++||+|||++|+... ..+..++|||+||||||++++++. +. ...
T Consensus 116 ~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~---~~~~~~lVvDiG~gttdvs~v~~~-------------~~----~~~ 175 (333)
T TIGR00904 116 AVKESALSAGAREVYLIEEPMAAAIGAGLPV---EEPTGSMVVDIGGGTTEVAVISLG-------------GI----VVS 175 (333)
T ss_pred HHHHHHHHcCCCeEEEecCHHHHHHhcCCcc---cCCceEEEEEcCCCeEEEEEEEeC-------------CE----Eec
Confidence 9999999999999999999999999998754 245789999999999999999753 11 123
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCCc-----ccEEEee--cccCcccE
Q 002363 259 WDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTM-----APISVES--LYVDIDFR 331 (930)
Q Consensus 259 ~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~-----~~i~ie~--l~~~~d~~ 331 (930)
++..+||++||+.|++++.++|.. ... +..||++|+.|+.... ..+.+.. ...+....
T Consensus 176 ~~~~lGG~did~~l~~~l~~~~~~------~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (333)
T TIGR00904 176 RSIRVGGDEFDEAIINYIRRTYNL------LIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRT 240 (333)
T ss_pred CCccchHHHHHHHHHHHHHHHhcc------cCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCeE
Confidence 455899999999999999876521 111 3578999999975321 2222221 12234456
Q ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-CCc-c-EEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhc
Q 002363 332 SSITRQKFEELCEDLWERSLVPLREVLNYSGLKM-DEI-Y-AVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVL 408 (930)
Q Consensus 332 ~~ItR~efe~l~~~~~~~i~~~i~~~L~~a~~~~-~~I-~-~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~ 408 (930)
..|+|++|.+++.+.+.++...|.++|+.++... .++ + .|+|+||+|++|.|++.|++.|+. ++....||+++||.
T Consensus 241 ~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~-~v~~~~~P~~~va~ 319 (333)
T TIGR00904 241 IEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGL-PVIVADDPLLCVAK 319 (333)
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCC-CceecCChHHHHHH
Confidence 7999999999999999999999999999987542 244 3 699999999999999999999985 67778899999999
Q ss_pred ccHHHHhh
Q 002363 409 GASLLAAN 416 (930)
Q Consensus 409 GAa~~aa~ 416 (930)
||++++..
T Consensus 320 Ga~~~~~~ 327 (333)
T TIGR00904 320 GTGKALED 327 (333)
T ss_pred HHHHHHhC
Confidence 99999664
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=3e-32 Score=305.88 Aligned_cols=309 Identities=22% Similarity=0.305 Sum_probs=230.1
Q ss_pred EEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEeC--C-cEEEcHhHHhhHhhCccchHhHhhhhhCCCc
Q 002363 26 VSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHE--S-TRLLGEEASGIIARYPHRVYSQLRDMIGKPF 102 (930)
Q Consensus 26 vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~~--~-~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~ 102 (930)
.+||||||+++++++. | .++ ++ + +||+|+|.. + ..++|.+|.....+.|.+...
T Consensus 10 ~vgiDlGt~~t~i~~~----~-~~~-~~-~------~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~---------- 66 (335)
T PRK13930 10 DIGIDLGTANTLVYVK----G-KGI-VL-N------EPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEA---------- 66 (335)
T ss_pred ceEEEcCCCcEEEEEC----C-CCE-EE-e------cCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEE----------
Confidence 4999999999999876 3 232 22 2 699999974 2 358999998766544433110
Q ss_pred hhhHhhHhhcCCCceEEECCCCceEEEeCCCceecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHHH
Q 002363 103 KQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQ 182 (930)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~ 182 (930)
..| +.+|..... +.+..+|+|+.+.+..........+|||||++|+..+|+++.+
T Consensus 67 ----------~~p--------------i~~G~i~d~-~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~ 121 (335)
T PRK13930 67 ----------IRP--------------LKDGVIADF-EATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE 121 (335)
T ss_pred ----------eec--------------CCCCeEcCH-HHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH
Confidence 011 112221222 3466777777765544333445689999999999999999999
Q ss_pred HHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCC
Q 002363 183 AAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAE 262 (930)
Q Consensus 183 Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~ 262 (930)
|++.+|++++.+++||+|||++|+... ..+..++|||+||||||++++... .+ + ..+...
T Consensus 122 ~~e~~g~~~~~lv~ep~AAa~a~g~~~---~~~~~~lVvDiG~gttdvs~v~~g--------------~~--~-~~~~~~ 181 (335)
T PRK13930 122 AAEHAGAREVYLIEEPMAAAIGAGLPV---TEPVGNMVVDIGGGTTEVAVISLG--------------GI--V-YSESIR 181 (335)
T ss_pred HHHHcCCCeEEecccHHHHHHhcCCCc---CCCCceEEEEeCCCeEEEEEEEeC--------------CE--E-eecCcC
Confidence 999999999999999999999998754 224568999999999999999642 11 1 245568
Q ss_pred cchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCCc----ccEEEe--ecccCcccEEEecH
Q 002363 263 LGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTM----APISVE--SLYVDIDFRSSITR 336 (930)
Q Consensus 263 lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~----~~i~ie--~l~~~~d~~~~ItR 336 (930)
+||.+||+.|++++.+++. .++. ...||++|+.++.... ..+.+. .+..+.+..+.|+|
T Consensus 182 lGG~~id~~l~~~l~~~~~------~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 246 (335)
T PRK13930 182 VAGDEMDEAIVQYVRRKYN------LLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISS 246 (335)
T ss_pred chhHHHHHHHHHHHHHHhC------CCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECH
Confidence 9999999999999987652 2211 2578999999975432 123332 23344556789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC--cCCccE-EEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHH
Q 002363 337 QKFEELCEDLWERSLVPLREVLNYSGLK--MDEIYA-VELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLL 413 (930)
Q Consensus 337 ~efe~l~~~~~~~i~~~i~~~L~~a~~~--~~~I~~-ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~ 413 (930)
++|++++.+.+.++.+.|.++|+.+... .+.++. |+|+||+|++|.+++.|.+.|+. ++....+|+++||+||++.
T Consensus 247 ~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~-~v~~~~~p~~ava~Ga~~~ 325 (335)
T PRK13930 247 EEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGL-PVHIAEDPLTCVARGTGKA 325 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCC-CceecCCHHHHHHHHHHHH
Confidence 9999999999999999999999987533 233454 99999999999999999999986 6667779999999999999
Q ss_pred Hhhhc
Q 002363 414 AANLS 418 (930)
Q Consensus 414 aa~ls 418 (930)
+....
T Consensus 326 ~~~~~ 330 (335)
T PRK13930 326 LENLD 330 (335)
T ss_pred HhChH
Confidence 87543
No 26
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.96 E-value=6.2e-28 Score=255.73 Aligned_cols=200 Identities=15% Similarity=0.210 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEE
Q 002363 139 EELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHV 218 (930)
Q Consensus 139 eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~v 218 (930)
-+.++++|+++++.++.+++.++.++|||||++|++.||+++.+|++.|||+++.|++||.|||++|+.. ..
T Consensus 39 ~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~--------~~ 110 (239)
T TIGR02529 39 FLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK--------NG 110 (239)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC--------Cc
Confidence 3678999999999999888888999999999999999999999999999999999999999999998643 25
Q ss_pred EEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHH
Q 002363 219 VFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMA 298 (930)
Q Consensus 219 lv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~ 298 (930)
+|+|+||||||+++++ .+.+. . ..+..+||++||+.|++++. ++
T Consensus 111 ~vvDiGggtt~i~i~~--------------~G~i~--~-~~~~~~GG~~it~~Ia~~~~----------i~--------- 154 (239)
T TIGR02529 111 AVVDVGGGTTGISILK--------------KGKVI--Y-SADEPTGGTHMSLVLAGAYG----------IS--------- 154 (239)
T ss_pred EEEEeCCCcEEEEEEE--------------CCeEE--E-EEeeecchHHHHHHHHHHhC----------CC---------
Confidence 9999999999999984 23222 2 23557999999998865442 22
Q ss_pred HHHHHHHHHhhhhcCCCcccEEEeecccCcccEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCC
Q 002363 299 KLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGT 378 (930)
Q Consensus 299 kL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~ItR~efe~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~s 378 (930)
+.+||++|+.++ +.+++.++|.++++++...|.+.|+.. .++.|+|+||++
T Consensus 155 --~~~AE~~K~~~~----------------------~~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a 205 (239)
T TIGR02529 155 --FEEAEEYKRGHK----------------------DEEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGAC 205 (239)
T ss_pred --HHHHHHHHHhcC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchh
Confidence 268899998654 145677899999999999999999865 456899999999
Q ss_pred CcHHHHHHHHHHhCCCccCCCCCcchhhhcccHH
Q 002363 379 RVPKLQAKLQEYLGRTELDRHLDADEAIVLGASL 412 (930)
Q Consensus 379 riP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~ 412 (930)
++|.|++.|++.||. ++..+.||++++|.|||+
T Consensus 206 ~ipgl~e~l~~~lg~-~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 206 SFSGFADVFEKQLGL-NVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred cchhHHHHHHHHhCC-CcccCCCCCeehhheeec
Confidence 999999999999986 677789999999999986
No 27
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.96 E-value=1.7e-27 Score=259.83 Aligned_cols=307 Identities=22% Similarity=0.351 Sum_probs=216.7
Q ss_pred cEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEeCC---cEEEcHhHHhhHhhCccchHhHhhhhhCCC
Q 002363 25 AVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHES---TRLLGEEASGIIARYPHRVYSQLRDMIGKP 101 (930)
Q Consensus 25 ~vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~~~---~~~~G~~A~~~~~~~p~~~~~~~K~llG~~ 101 (930)
.-+||||||+|+.|+.- + .+ ++.+ .||+|+|... -..+|.+|..+..+.|.+.-
T Consensus 2 ~~igIDLGT~~t~i~~~----~-~G--iv~~------epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~---------- 58 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYVK----G-KG--IVLN------EPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIE---------- 58 (326)
T ss_dssp SEEEEEE-SSEEEEEET----T-TE--EEEE------EES-EEEETTT--EEEESHHHHTTTTS-GTTEE----------
T ss_pred CceEEecCcccEEEEEC----C-CC--EEEe------cCcEEEEECCCCeEEEEhHHHHHHhhcCCCccE----------
Confidence 46899999999988643 3 22 4555 3999999853 34589999776555444311
Q ss_pred chhhHhhHhhcCCCceEEECCCCceEEEeCCCceecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHH
Q 002363 102 FKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLM 181 (930)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~ 181 (930)
. ..| +.+| .+.=-++...+|+|+.+.+.......--.++|+||+.-++.+|+++.
T Consensus 59 -----~-----~~P--------------l~~G-vI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~ 113 (326)
T PF06723_consen 59 -----V-----VRP--------------LKDG-VIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALI 113 (326)
T ss_dssp -----E-----E-S--------------EETT-EESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHH
T ss_pred -----E-----Ecc--------------ccCC-cccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHH
Confidence 0 111 2223 12223567778888877766532223347999999999999999999
Q ss_pred HHHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCC
Q 002363 182 QAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDA 261 (930)
Q Consensus 182 ~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~ 261 (930)
+|+..||.+-+.||.||.|||+..++.- .++...||+|+||||||++++.+ .+.+.-.. .
T Consensus 114 ~a~~~aGa~~V~li~ep~AaAiGaGl~i---~~~~g~miVDIG~GtTdiavisl-------------ggiv~s~s----i 173 (326)
T PF06723_consen 114 DAARQAGARKVYLIEEPIAAAIGAGLDI---FEPRGSMIVDIGGGTTDIAVISL-------------GGIVASRS----I 173 (326)
T ss_dssp HHHHHTT-SEEEEEEHHHHHHHHTT--T---TSSS-EEEEEE-SS-EEEEEEET-------------TEEEEEEE----E
T ss_pred HHHHHcCCCEEEEecchHHHHhcCCCCC---CCCCceEEEEECCCeEEEEEEEC-------------CCEEEEEE----E
Confidence 9999999999999999999999988764 35688999999999999999953 23322223 2
Q ss_pred CcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCC----cccEEEe--ecccCcccEEEec
Q 002363 262 ELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANT----MAPISVE--SLYVDIDFRSSIT 335 (930)
Q Consensus 262 ~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~----~~~i~ie--~l~~~~d~~~~It 335 (930)
..||.+||+.|.+|+.++|.-. +. ...||++|+.++.-. ...+.|. ++..+..-.+.|+
T Consensus 174 ~~gG~~~DeaI~~~ir~~y~l~------Ig---------~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~ 238 (326)
T PF06723_consen 174 RIGGDDIDEAIIRYIREKYNLL------IG---------ERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEIT 238 (326)
T ss_dssp S-SHHHHHHHHHHHHHHHHSEE-----------------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEE
T ss_pred EecCcchhHHHHHHHHHhhCcc------cC---------HHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEc
Confidence 7899999999999999997422 21 357899999987532 2234443 4567888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-CCc--cEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHH
Q 002363 336 RQKFEELCEDLWERSLVPLREVLNYSGLKM-DEI--YAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASL 412 (930)
Q Consensus 336 R~efe~l~~~~~~~i~~~i~~~L~~a~~~~-~~I--~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~ 412 (930)
-+++.+.|.+.+.+|...|.++|+...-.. .|| +.|+|+||+++++.+.+.|++.+|- ++...-||..||++||..
T Consensus 239 ~~ev~~ai~~~~~~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~-pV~va~~P~~~va~G~~~ 317 (326)
T PF06723_consen 239 SSEVREAIEPPVDQIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGV-PVRVADDPLTAVARGAGK 317 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS--EEE-SSTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCC-CEEEcCCHHHHHHHHHHH
Confidence 999999999999999999999999753221 243 5799999999999999999999986 788888999999999986
Q ss_pred HHh
Q 002363 413 LAA 415 (930)
Q Consensus 413 ~aa 415 (930)
...
T Consensus 318 ~l~ 320 (326)
T PF06723_consen 318 LLE 320 (326)
T ss_dssp TTC
T ss_pred HHh
Confidence 644
No 28
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.94 E-value=4.9e-25 Score=237.74 Aligned_cols=202 Identities=16% Similarity=0.227 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEE
Q 002363 139 EELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHV 218 (930)
Q Consensus 139 eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~v 218 (930)
-+.....|+++++.++.+++.++..++++||++|+..+|+++.+|++.||+++..+++||.|++.+|... ..
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~--------~~ 137 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID--------NG 137 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC--------Cc
Confidence 3566778999999999988888999999999999999999999999999999999999999999987542 16
Q ss_pred EEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHH
Q 002363 219 VFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMA 298 (930)
Q Consensus 219 lv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~ 298 (930)
+++|||||||+++++. .+.+. . .++..+||++||+.|++++. .+
T Consensus 138 ~vvDIGggtt~i~v~~--------------~g~~~--~-~~~~~~GG~~it~~Ia~~l~----------i~--------- 181 (267)
T PRK15080 138 AVVDIGGGTTGISILK--------------DGKVV--Y-SADEPTGGTHMSLVLAGAYG----------IS--------- 181 (267)
T ss_pred EEEEeCCCcEEEEEEE--------------CCeEE--E-EecccCchHHHHHHHHHHhC----------CC---------
Confidence 8999999999999984 23322 2 24669999999999987752 11
Q ss_pred HHHHHHHHHhhhhcCCCcccEEEeecccCcccEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCC
Q 002363 299 KLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGT 378 (930)
Q Consensus 299 kL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~ItR~efe~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~s 378 (930)
+.+||++|+.++ +++++.++++++++++.+.|++.|+.. .++.|+|+||+|
T Consensus 182 --~~eAE~lK~~~~----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s 232 (267)
T PRK15080 182 --FEEAEQYKRDPK----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTC 232 (267)
T ss_pred --HHHHHHHHhccC----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcc
Confidence 367888887653 357889999999999999999999864 678999999999
Q ss_pred CcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHH
Q 002363 379 RVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLA 414 (930)
Q Consensus 379 riP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~a 414 (930)
++|.+++.+++.||. ++....||+.++|.|||+||
T Consensus 233 ~lpgl~e~l~~~lg~-~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 233 CLPGFEEVFEKQTGL-PVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred cchhHHHHHHHHhCC-CcccCCCchHHHHHHHHhhC
Confidence 999999999999986 67778999999999999875
No 29
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.94 E-value=3.5e-24 Score=224.09 Aligned_cols=311 Identities=23% Similarity=0.326 Sum_probs=234.0
Q ss_pred ccEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEeC--C---cEEEcHhHHhhHhhCccchHhHhhhhh
Q 002363 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHE--S---TRLLGEEASGIIARYPHRVYSQLRDMI 98 (930)
Q Consensus 24 ~~vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~~--~---~~~~G~~A~~~~~~~p~~~~~~~K~ll 98 (930)
+..+||||||.|+.|... |+ -|++|+ ||+|++.. + -..+|.+|+.+..+.|.+...
T Consensus 6 s~diGIDLGTanTlV~~k----~k---gIVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~a------ 66 (342)
T COG1077 6 SNDIGIDLGTANTLVYVK----GK---GIVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVA------ 66 (342)
T ss_pred cccceeeecccceEEEEc----Cc---eEEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCceE------
Confidence 458999999999998764 31 267775 99999976 3 235899997766555554211
Q ss_pred CCCchhhHhhHhhcCCCceEEECCCCceEEEeCCCceecHHHHHHHHHHHHHHHHHHhcc-CccccEEEeeCCCCCHHHH
Q 002363 99 GKPFKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAK-LAVKDFVISVPPYFGQAER 177 (930)
Q Consensus 99 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~-~~~~~~VItVPa~f~~~qR 177 (930)
+.+ ..+| .+.--++...+|+|+.+.+....+ ...-.++|.||+.-++-+|
T Consensus 67 -------------------iRP---------mkdG-VIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VEr 117 (342)
T COG1077 67 -------------------IRP---------MKDG-VIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVER 117 (342)
T ss_pred -------------------Eee---------cCCc-EeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHH
Confidence 011 1122 233345677788888877654332 2233699999999999999
Q ss_pred HHHHHHHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEe
Q 002363 178 KGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDV 257 (930)
Q Consensus 178 ~al~~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~ 257 (930)
+|+++|++.||.+-+.|+.||.|||+.-++.- ..+..-+|||+||||||++++.+. +.+.--+
T Consensus 118 rAi~ea~~~aGa~~V~lieEp~aAAIGaglpi---~ep~G~mvvDIGgGTTevaVISlg-------------giv~~~S- 180 (342)
T COG1077 118 RAIKEAAESAGAREVYLIEEPMAAAIGAGLPI---MEPTGSMVVDIGGGTTEVAVISLG-------------GIVSSSS- 180 (342)
T ss_pred HHHHHHHHhccCceEEEeccHHHHHhcCCCcc---cCCCCCEEEEeCCCceeEEEEEec-------------CEEEEee-
Confidence 99999999999999999999999999876643 345678999999999999999762 3222222
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCC--------CcccEEEeecccCcc
Q 002363 258 RWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSAN--------TMAPISVESLYVDID 329 (930)
Q Consensus 258 ~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~--------~~~~i~ie~l~~~~d 329 (930)
-.+||+.||+.|.+|+.++|+-- +- . +.||++|.....- .+..+.-.++..+..
T Consensus 181 ---irv~GD~~De~Ii~yvr~~~nl~------IG--e-------~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlP 242 (342)
T COG1077 181 ---VRVGGDKMDEAIIVYVRKKYNLL------IG--E-------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLP 242 (342)
T ss_pred ---EEEecchhhHHHHHHHHHHhCee------ec--H-------HHHHHHHHHhcccccccCCccceeeEEeeecccCCC
Confidence 37999999999999999887422 21 1 2477777766321 224455556777888
Q ss_pred cEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCcCCccE-EEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhh
Q 002363 330 FRSSITRQKFEELCEDLWERSLVPLREVLNYSG--LKMDEIYA-VELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAI 406 (930)
Q Consensus 330 ~~~~ItR~efe~l~~~~~~~i~~~i~~~L~~a~--~~~~~I~~-ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaV 406 (930)
-.++++-++..+.+++.+++|.+.|+..|+... +..+-++. ++|+||++.+..+.+.|.+..+. ++....+|-.||
T Consensus 243 k~i~i~s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~-pv~ia~~pL~~V 321 (342)
T COG1077 243 KTITINSEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGV-PVIIADDPLTCV 321 (342)
T ss_pred eeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCC-eEEECCChHHHH
Confidence 889999999999999999999999999999853 33334455 99999999999999999999886 666777999999
Q ss_pred hcccHHHHhhhc
Q 002363 407 VLGASLLAANLS 418 (930)
Q Consensus 407 a~GAa~~aa~ls 418 (930)
|+|+.+....+.
T Consensus 322 a~G~G~~le~~~ 333 (342)
T COG1077 322 AKGTGKALEALD 333 (342)
T ss_pred HhccchhhhhhH
Confidence 999998877654
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.88 E-value=1.3e-20 Score=214.25 Aligned_cols=195 Identities=18% Similarity=0.243 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEE
Q 002363 175 AERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQV 254 (930)
Q Consensus 175 ~qR~al~~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~v 254 (930)
...+.+.+|++.|||++..++.||.|+|++|.... ..+..++++|+||||||++++. .+.+..
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~---~~~~~~~vvDiG~gtt~i~i~~--------------~g~~~~ 220 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTED---EKELGVCLIDIGGGTTDIAVYT--------------GGSIRY 220 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcc---hhcCCEEEEEeCCCcEEEEEEE--------------CCEEEE
Confidence 34677888999999999999999999999885432 2346799999999999999994 232222
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCC------CcccEEEeecccCc
Q 002363 255 KDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSAN------TMAPISVESLYVDI 328 (930)
Q Consensus 255 l~~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~------~~~~i~ie~l~~~~ 328 (930)
.....+||++||..|++.+. . .+.+||++|+.++.. ....+.++.+. .
T Consensus 221 ---~~~i~~GG~~it~~i~~~l~----------~-----------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~ 274 (371)
T TIGR01174 221 ---TKVIPIGGNHITKDIAKALR----------T-----------PLEEAERIKIKYGCASIPLEGPDENIEIPSVG--E 274 (371)
T ss_pred ---EeeecchHHHHHHHHHHHhC----------C-----------CHHHHHHHHHHeeEecccCCCCCCEEEeccCC--C
Confidence 22347999999998876431 1 156899999998753 24456665443 4
Q ss_pred ccEEEecHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCcCCccE-EEEEcCCCCcHHHHHHHHHHhCCC-ccCCC------
Q 002363 329 DFRSSITRQKFEELCEDLWERSLVPLR-EVLNYSGLKMDEIYA-VELIGGGTRVPKLQAKLQEYLGRT-ELDRH------ 399 (930)
Q Consensus 329 d~~~~ItR~efe~l~~~~~~~i~~~i~-~~L~~a~~~~~~I~~-ViLvGG~sriP~V~~~l~~~fg~~-~i~~~------ 399 (930)
++...|+|++|++++.+.++++...|. +.|+.++.. .+++. |+|+||+|++|.|++.+.+.|+.. .+..+
T Consensus 275 ~~~~~is~~~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~ 353 (371)
T TIGR01174 275 RPPRSLSRKELAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGL 353 (371)
T ss_pred CCCeEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCc
Confidence 567899999999999999999999997 999999887 67877 999999999999999999999864 11111
Q ss_pred ----CCcchhhhcccHHH
Q 002363 400 ----LDADEAIVLGASLL 413 (930)
Q Consensus 400 ----~n~deaVa~GAa~~ 413 (930)
-+|..++|.|.++|
T Consensus 354 ~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 354 TEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred hhhcCCcHHHHHHHHHhC
Confidence 14566677776653
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.83 E-value=8e-19 Score=201.91 Aligned_cols=195 Identities=16% Similarity=0.166 Sum_probs=146.3
Q ss_pred HHHHHHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEec
Q 002363 179 GLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVR 258 (930)
Q Consensus 179 al~~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~ 258 (930)
.+..|++.|||++..++.||.|+|.++.... +....++++||||||||++++. .+.+....
T Consensus 170 ~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~---e~~~gv~vvDiGggtTdisv~~--------------~G~l~~~~-- 230 (420)
T PRK09472 170 NIVKAVERCGLKVDQLIFAGLASSYAVLTED---ERELGVCVVDIGGGTMDIAVYT--------------GGALRHTK-- 230 (420)
T ss_pred HHHHHHHHcCCeEeeEEehhhHHHHHhcChh---hhhcCeEEEEeCCCceEEEEEE--------------CCEEEEEe--
Confidence 3457999999999999999999999885543 3457799999999999999994 34333222
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcC------CCcccEEEeecccCcccEE
Q 002363 259 WDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSA------NTMAPISVESLYVDIDFRS 332 (930)
Q Consensus 259 ~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~------~~~~~i~ie~l~~~~d~~~ 332 (930)
...+||.+|++.|+..|. ++ ..+||++|..+.. .....+.++.+.... ..
T Consensus 231 -~i~~GG~~it~dIa~~l~----------i~-----------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~~--~~ 286 (420)
T PRK09472 231 -VIPYAGNVVTSDIAYAFG----------TP-----------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRP--PR 286 (420)
T ss_pred -eeechHHHHHHHHHHHhC----------cC-----------HHHHHHHHHhcceeccccCCCCceeEecCCCCCC--Ce
Confidence 247899999998875542 11 3689999966432 123456666543322 24
Q ss_pred EecHHHHHHHHHHHHHHHHHHHH-------HHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCC-ccCC------
Q 002363 333 SITRQKFEELCEDLWERSLVPLR-------EVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT-ELDR------ 398 (930)
Q Consensus 333 ~ItR~efe~l~~~~~~~i~~~i~-------~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~-~i~~------ 398 (930)
.|+|.+|.+++.+.++.+...|. ..|..+++....++.|+|+||++++|.|++.+.+.|+.. .+..
T Consensus 287 ~i~~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g 366 (420)
T PRK09472 287 SLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITG 366 (420)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCC
Confidence 89999999999996666665555 556777888788999999999999999999999999863 1111
Q ss_pred ----CCCcchhhhcccHHHHhh
Q 002363 399 ----HLDADEAIVLGASLLAAN 416 (930)
Q Consensus 399 ----~~n~deaVa~GAa~~aa~ 416 (930)
..+|..|+|.|.++|+..
T Consensus 367 ~~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 367 LTDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred ChhhcCCcHHHHHHHHHHHhhh
Confidence 237899999999999773
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.68 E-value=7.9e-15 Score=164.44 Aligned_cols=207 Identities=24% Similarity=0.290 Sum_probs=163.9
Q ss_pred EEEeeCCCCCHHHHHHHHHHHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccc
Q 002363 164 FVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVY 243 (930)
Q Consensus 164 ~VItVPa~f~~~qR~al~~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~ 243 (930)
.+|++|..+ -+.|.+|++.+||++..++-+|-|+|.+..... .+.-.++++||||||||+++++
T Consensus 158 hvit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~d---EkelGv~lIDiG~GTTdIai~~--------- 221 (418)
T COG0849 158 HVITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAVLTED---EKELGVALIDIGGGTTDIAIYK--------- 221 (418)
T ss_pred EEEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhccCcc---cHhcCeEEEEeCCCcEEEEEEE---------
Confidence 467777665 456889999999999999999999998665443 4567899999999999999994
Q ss_pred cceeccceEEEEEecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCC------Ccc
Q 002363 244 GKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSAN------TMA 317 (930)
Q Consensus 244 g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~------~~~ 317 (930)
.+.+...++ -.+||++++..|+.-|.-. +..||++|...... ...
T Consensus 222 -----~G~l~~~~~---ipvgG~~vT~DIa~~l~t~---------------------~~~AE~iK~~~g~a~~~~~~~~~ 272 (418)
T COG0849 222 -----NGALRYTGV---IPVGGDHVTKDIAKGLKTP---------------------FEEAERIKIKYGSALISLADDEE 272 (418)
T ss_pred -----CCEEEEEee---EeeCccHHHHHHHHHhCCC---------------------HHHHHHHHHHcCccccCcCCCcc
Confidence 454443333 5899999999998766422 35788888887432 234
Q ss_pred cEEEeecccCcccEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCC-cc
Q 002363 318 PISVESLYVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT-EL 396 (930)
Q Consensus 318 ~i~ie~l~~~~d~~~~ItR~efe~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~-~i 396 (930)
.+.++...++. ...++|..+.++++.-+..+..+++..|+++++...-...|+|+||++.+|.+.+..++.|+.. ++
T Consensus 273 ~i~v~~vg~~~--~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRi 350 (418)
T COG0849 273 TIEVPSVGSDI--PRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRL 350 (418)
T ss_pred eEecccCCCcc--cchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEe
Confidence 56666554443 6689999999999999999999999999999998777799999999999999999999999864 22
Q ss_pred CCC----------CCcchhhhcccHHHHhhh
Q 002363 397 DRH----------LDADEAIVLGASLLAANL 417 (930)
Q Consensus 397 ~~~----------~n~deaVa~GAa~~aa~l 417 (930)
..+ .+|..+.|.|..+|++..
T Consensus 351 g~P~~~~Gl~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 351 GVPLNIVGLTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred CCCccccCchhhccCchhhhhHHHHHHHhhc
Confidence 222 357778888888888753
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.60 E-value=2.5e-14 Score=162.97 Aligned_cols=238 Identities=16% Similarity=0.136 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHHHH-HHHcCCCeeEEechhhHHHHHhccccCCCCCCcEE
Q 002363 140 ELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHV 218 (930)
Q Consensus 140 el~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~A-a~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~v 218 (930)
+.+..+++|+....-. ....-..++|++|..++..+|+.+.+. .+..|++.+.+++++.+|+++|+. ...
T Consensus 75 ~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~--------~~~ 145 (371)
T cd00012 75 DDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR--------TTG 145 (371)
T ss_pred HHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC--------CeE
Confidence 3445566666543211 111235799999999998888888775 666899999999999999998754 579
Q ss_pred EEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHH
Q 002363 219 VFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMA 298 (930)
Q Consensus 219 lv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~ 298 (930)
+|+|+|+++|+++.+. .|.+ +........+||.++|+.|.+++..... ..+..
T Consensus 146 lVVDiG~~~t~i~pv~--------------~G~~-~~~~~~~~~~GG~~l~~~l~~~l~~~~~-----~~~~~------- 198 (371)
T cd00012 146 LVVDSGDGVTHVVPVY--------------DGYV-LPHAIKRLDLAGRDLTRYLKELLRERGY-----ELNSS------- 198 (371)
T ss_pred EEEECCCCeeEEEEEE--------------CCEE-chhhheeccccHHHHHHHHHHHHHhcCC-----Cccch-------
Confidence 9999999999999883 2322 2222233589999999999998865431 11111
Q ss_pred HHHHHHHHHhhhhcCCC---cc----------c-EEEeecccCcccEEEecHHHHHHHHHHHHH---------HHHHHHH
Q 002363 299 KLKKQVKRTKEILSANT---MA----------P-ISVESLYVDIDFRSSITRQKFEELCEDLWE---------RSLVPLR 355 (930)
Q Consensus 299 kL~~~aek~K~~LS~~~---~~----------~-i~ie~l~~~~d~~~~ItR~efe~l~~~~~~---------~i~~~i~ 355 (930)
.-...++.+|+.+..-. .. . ...-.|-++ ..+.+..+.| .+++.+|+ .+.+.|.
T Consensus 199 ~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~--~~i~~~~er~-~~~E~lF~p~~~~~~~~~i~~~i~ 275 (371)
T cd00012 199 DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDG--RTIKVGNERF-RAPEILFNPSLIGSEQVGISEAIY 275 (371)
T ss_pred hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCC--eEEEEChHHh-hChHhcCChhhcCCCcCCHHHHHH
Confidence 11234555565543210 00 0 000111122 2456665544 23333443 6788888
Q ss_pred HHHHHcCC--CcCCccEEEEEcCCCCcHHHHHHHHHHhCCC---------ccCCCCCcchhhhcccHHHHhh
Q 002363 356 EVLNYSGL--KMDEIYAVELIGGGTRVPKLQAKLQEYLGRT---------ELDRHLDADEAIVLGASLLAAN 416 (930)
Q Consensus 356 ~~L~~a~~--~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~---------~i~~~~n~deaVa~GAa~~aa~ 416 (930)
++|..... ...-++.|+|+||+|++|.+.+.|.+.+... .+....++..++-+||+++|..
T Consensus 276 ~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 276 SSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 88887643 2334688999999999999999998877621 2334567888999999999875
No 34
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.51 E-value=2.2e-12 Score=144.49 Aligned_cols=207 Identities=14% Similarity=0.198 Sum_probs=137.5
Q ss_pred EEEeeCCCCCHHHH-HHHHHHHHHc------C------CCeeEEechhhHHHHHhccccCC-----CCCCcEEEEEEcCC
Q 002363 164 FVISVPPYFGQAER-KGLMQAAELA------G------MNVLSLVNEHSGAALQYGIDKDF-----SNESRHVVFYDMGA 225 (930)
Q Consensus 164 ~VItVPa~f~~~qR-~al~~Aa~~A------G------l~~l~Li~EptAAAl~y~~~~~~-----~~~~~~vlv~D~Gg 225 (930)
+|...|..+-..++ ..+.+..... | +.-+.++.+|.+|.+.+.....- ......++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 44599998855554 6666554211 1 12356889999998887664310 11335789999999
Q ss_pred CceEEEEEEEeecccccccceeccceEEEEEecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHH
Q 002363 226 TTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVK 305 (930)
Q Consensus 226 gT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~ae 305 (930)
||||++++. .+.+. ....+....|..++.+.|.+++.... ++..+. . .++.+.
T Consensus 195 ~TtD~~v~~--------------~~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~~-----~~~~~~--~---~~ie~~-- 247 (344)
T PRK13917 195 GTTDLDTIQ--------------NLKRV-EEESFVIPKGTIDVYKRIASHISKKE-----EGASIT--P---YMLEKG-- 247 (344)
T ss_pred CcEEEEEEe--------------CcEEc-ccccccccchHHHHHHHHHHHHHhhC-----CCCCCC--H---HHHHHH--
Confidence 999999983 22222 23334457899999999999886543 232321 1 122111
Q ss_pred HHhhhhcCCCcccEEEeecccCcccEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHH
Q 002363 306 RTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQA 385 (930)
Q Consensus 306 k~K~~LS~~~~~~i~ie~l~~~~d~~~~ItR~efe~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~ 385 (930)
|... .+.+. .+. .+.+ ++++.++++.+++++...|...+.. ..+++.|+|+||++++ +++
T Consensus 248 -----l~~g---~i~~~---~~~--~id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~ 307 (344)
T PRK13917 248 -----LEYG---ACKLN---QKT--VIDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFD 307 (344)
T ss_pred -----HHcC---cEEeC---CCc--eEeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHH
Confidence 2111 11111 111 1122 5668889999999999999888853 3589999999999987 889
Q ss_pred HHHHHhCCCccCCCCCcchhhhcccHHHHhhhcC
Q 002363 386 KLQEYLGRTELDRHLDADEAIVLGASLLAANLSD 419 (930)
Q Consensus 386 ~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls~ 419 (930)
.|++.|+. +...-||..|-|+|...+|..+.+
T Consensus 308 ~lk~~f~~--~~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 308 SLSHWYSD--VEKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred HHHHHcCC--eEEcCChHHHHHHHHHHHHHHHhc
Confidence 99999985 456679999999999999986554
No 35
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.47 E-value=6.6e-13 Score=151.51 Aligned_cols=235 Identities=15% Similarity=0.164 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHHHhccC--ccccEEEeeCCCCCHHHHHHHHHHH-HHcCCCeeEEechhhHHHHHhccccCCCCCCc
Q 002363 140 ELLAMVLSYAVNLVDTHAKL--AVKDFVISVPPYFGQAERKGLMQAA-ELAGMNVLSLVNEHSGAALQYGIDKDFSNESR 216 (930)
Q Consensus 140 el~a~~L~~lk~~a~~~~~~--~~~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~ 216 (930)
+.+..+|+++... .++. .-..++|++|...+..+|+.+.+.+ +..|++-+.++.+|.+|+++++ ..
T Consensus 75 ~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g--------~~ 143 (373)
T smart00268 75 DDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASG--------RT 143 (373)
T ss_pred HHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC--------CC
Confidence 4556677777653 2222 2346899999999999999999886 4679999999999999998875 26
Q ss_pred EEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHH
Q 002363 217 HVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKA 296 (930)
Q Consensus 217 ~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~ 296 (930)
+.+|+|+|+++|+++.+. .|. -+........+||.++|+.|.+++...- ...+..
T Consensus 144 ~~lVVDiG~~~t~v~pv~--------------~G~-~~~~~~~~~~~GG~~l~~~l~~~l~~~~-----~~~~~~----- 198 (373)
T smart00268 144 TGLVIDSGDGVTHVVPVV--------------DGY-VLPHAIKRIDIAGRDLTDYLKELLSERG-----YQFNSS----- 198 (373)
T ss_pred EEEEEecCCCcceEEEEE--------------CCE-EchhhheeccCcHHHHHHHHHHHHHhcC-----CCCCcH-----
Confidence 799999999999999983 222 1222222348999999999999886521 111111
Q ss_pred HHHHHHHHHHHhhhhcCC---C--------------cccEEEeecccCcccEEEecHHHHHHHHHHHH---------HHH
Q 002363 297 MAKLKKQVKRTKEILSAN---T--------------MAPISVESLYVDIDFRSSITRQKFEELCEDLW---------ERS 350 (930)
Q Consensus 297 ~~kL~~~aek~K~~LS~~---~--------------~~~i~ie~l~~~~d~~~~ItR~efe~l~~~~~---------~~i 350 (930)
.-...++.+|+.+..- . ..... -.+.++.. +.+..+.| .+++.+| ..+
T Consensus 199 --~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~lpdg~~--~~~~~er~-~~~E~lf~p~~~~~~~~~i 272 (373)
T smart00268 199 --AEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKT-YELPDGNT--IKVGNERF-RIPEILFKPELIGLEQKGI 272 (373)
T ss_pred --HHHHHHHHhhhheeeecCChHHHHHHhhhccccccccee-EECCCCCE--EEEChHHe-eCchhcCCchhcCCCcCCH
Confidence 1122344445443210 0 00000 01223332 33443333 2223333 367
Q ss_pred HHHHHHHHHHcCCC--cCCccEEEEEcCCCCcHHHHHHHHHHhCCC-------ccCCCCCcchhhhcccHHHHhh
Q 002363 351 LVPLREVLNYSGLK--MDEIYAVELIGGGTRVPKLQAKLQEYLGRT-------ELDRHLDADEAIVLGASLLAAN 416 (930)
Q Consensus 351 ~~~i~~~L~~a~~~--~~~I~~ViLvGG~sriP~V~~~l~~~fg~~-------~i~~~~n~deaVa~GAa~~aa~ 416 (930)
.+.|.++|..+... ..-.+.|+|+||+|++|.+.++|.+-+... .+..+.++..++=.||+++|..
T Consensus 273 ~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 273 HELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred HHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCc
Confidence 78888888775422 222467999999999999999998776321 2333445566777788877764
No 36
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.41 E-value=8.1e-13 Score=128.73 Aligned_cols=194 Identities=19% Similarity=0.238 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEc
Q 002363 144 MVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDM 223 (930)
Q Consensus 144 ~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~ 223 (930)
.+.+.+++.++..+|..+.+..-++|+.--+...++..+..+.||+.++..++||||||.-..+. .-.|+|+
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~--------dg~VVDi 147 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD--------DGGVVDI 147 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccC--------CCcEEEe
Confidence 46788999999999999999999999998877888889999999999999999999998654443 3578999
Q ss_pred CCCceEEEEEEEeecccccccceeccceEEEEEecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHH
Q 002363 224 GATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQ 303 (930)
Q Consensus 224 GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~ 303 (930)
|||||-+||++ .+. |+. ..|...||.++...|+-+ ++++ +.+
T Consensus 148 GGGTTGIsi~k--------------kGk--Viy-~ADEpTGGtHmtLvlAG~----------ygi~-----------~Ee 189 (277)
T COG4820 148 GGGTTGISIVK--------------KGK--VIY-SADEPTGGTHMTLVLAGN----------YGIS-----------LEE 189 (277)
T ss_pred CCCcceeEEEE--------------cCc--EEE-eccCCCCceeEEEEEecc----------cCcC-----------HhH
Confidence 99999999994 333 222 335678988887766432 3333 245
Q ss_pred HHHHhhhhcCCCcccEEEeecccCcccEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHH
Q 002363 304 VKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKL 383 (930)
Q Consensus 304 aek~K~~LS~~~~~~i~ie~l~~~~d~~~~ItR~efe~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V 383 (930)
||..|..--... |.=-.+.|+++++.+.+.+-++..+ |..+.|+||+|.-|.+
T Consensus 190 AE~~Kr~~k~~~----------------------Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~ 242 (277)
T COG4820 190 AEQYKRGHKKGE----------------------EIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGV 242 (277)
T ss_pred HHHhhhccccch----------------------hcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccH
Confidence 666554211111 1112457899999999999988765 4568999999999999
Q ss_pred HHHHHHHhCCCccCCCCCcchhhhcccH
Q 002363 384 QAKLQEYLGRTELDRHLDADEAIVLGAS 411 (930)
Q Consensus 384 ~~~l~~~fg~~~i~~~~n~deaVa~GAa 411 (930)
.+..++.|+. ++..+-.|.--.-+|-|
T Consensus 243 e~~Fe~~l~l-~v~~P~~p~y~TPLgIA 269 (277)
T COG4820 243 EELFEKQLAL-QVHLPQHPLYMTPLGIA 269 (277)
T ss_pred HHHHHHHhcc-ccccCCCcceechhhhh
Confidence 9999999965 55555444444444443
No 37
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.36 E-value=8e-11 Score=135.94 Aligned_cols=224 Identities=11% Similarity=0.064 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHHHHhccC--ccccEEEeeCCCCCHHHHHHHHHHHH-HcCCCeeEEechhhHHHHHhccccCCC--CC
Q 002363 140 ELLAMVLSYAVNLVDTHAKL--AVKDFVISVPPYFGQAERKGLMQAAE-LAGMNVLSLVNEHSGAALQYGIDKDFS--NE 214 (930)
Q Consensus 140 el~a~~L~~lk~~a~~~~~~--~~~~~VItVPa~f~~~qR~al~~Aa~-~AGl~~l~Li~EptAAAl~y~~~~~~~--~~ 214 (930)
+.+..++.|+... .++. .-..++||.|+.++..+|+.+.+.+- ..|++-+.++.++.+++++++...... ..
T Consensus 82 d~~e~l~~~~~~~---~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g 158 (414)
T PTZ00280 82 DLMEKFWEQCIFK---YLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGG 158 (414)
T ss_pred HHHHHHHHHHHHH---hhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCC
Confidence 3445566665421 1221 12358999999999999999888754 458888899999999998764322100 02
Q ss_pred CcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcH
Q 002363 215 SRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSP 294 (930)
Q Consensus 215 ~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~ 294 (930)
..+-||||+|+|+|+++.|. .|.. +........+||++++..|.++|.++. + .+...
T Consensus 159 ~~tglVVDiG~~~T~i~PV~--------------~G~~-l~~~~~~~~~GG~~lt~~L~~lL~~~~-----~--~~~~~- 215 (414)
T PTZ00280 159 TLTGTVIDSGDGVTHVIPVV--------------DGYV-IGSSIKHIPLAGRDITNFIQQMLRERG-----E--PIPAE- 215 (414)
T ss_pred ceeEEEEECCCCceEEEEEE--------------CCEE-cccceEEecCcHHHHHHHHHHHHHHcC-----C--CCCcH-
Confidence 35679999999999998872 2221 111111237999999999999986432 1 11111
Q ss_pred HHHHHHHHHHHHHhhhhcCCC-----------------cccEEEeecccCcccEEEecHHHHH---HHHHHHH------H
Q 002363 295 KAMAKLKKQVKRTKEILSANT-----------------MAPISVESLYVDIDFRSSITRQKFE---ELCEDLW------E 348 (930)
Q Consensus 295 ~~~~kL~~~aek~K~~LS~~~-----------------~~~i~ie~l~~~~d~~~~ItR~efe---~l~~~~~------~ 348 (930)
..+..++.+|+.+.--. ...+.++...++....+.|..+.|. -++.|-+ .
T Consensus 216 ----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~ 291 (414)
T PTZ00280 216 ----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTT 291 (414)
T ss_pred ----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCC
Confidence 01223555555543210 0112222222233456788887774 3444422 2
Q ss_pred HHHHHHHHHHHHcCCC--cCCccEEEEEcCCCCcHHHHHHHHHHhCC
Q 002363 349 RSLVPLREVLNYSGLK--MDEIYAVELIGGGTRVPKLQAKLQEYLGR 393 (930)
Q Consensus 349 ~i~~~i~~~L~~a~~~--~~~I~~ViLvGG~sriP~V~~~l~~~fg~ 393 (930)
.+.+.|.++|..+... ..-.+.|+|+||+|.+|.+.++|.+-+..
T Consensus 292 gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~ 338 (414)
T PTZ00280 292 PLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRK 338 (414)
T ss_pred CHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHH
Confidence 4677888888776433 22357899999999999999999877753
No 38
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.24 E-value=5.8e-11 Score=136.57 Aligned_cols=312 Identities=16% Similarity=0.184 Sum_probs=176.4
Q ss_pred ccEEEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCccceEEEEEeCC-----cEEEcHhHHhhHhhCccchHhHhhhhh
Q 002363 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHES-----TRLLGEEASGIIARYPHRVYSQLRDMI 98 (930)
Q Consensus 24 ~~vvGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~~PS~V~~~~~-----~~~~G~~A~~~~~~~p~~~~~~~K~ll 98 (930)
..+|-||+|+.++++++. ... .|- ..+||+++.... ..++|..+... .+
T Consensus 4 ~~~vViD~Gs~~~k~G~a--ge~-~P~---------~v~ps~~~~~~~~~~~~~~~~g~~~~~~---~~----------- 57 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFA--GED-LPR---------VVIPSVVGRPRDKNSSNDYYVGDEALSP---RS----------- 57 (393)
T ss_dssp SSEEEEEECSSEEEEEET--TSS-S-S---------EEEESEEEEESSSSSSSSCEETHHHHHT---GT-----------
T ss_pred CCEEEEECCCceEEEEEC--CCC-CCC---------CcCCCccccccccccceeEEeecccccc---hh-----------
Confidence 468899999999999987 322 232 236888876433 34677763220 00
Q ss_pred CCCchhhHhhHhhcCCCceEEECCCCceEEEeCCCceecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHH
Q 002363 99 GKPFKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERK 178 (930)
Q Consensus 99 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~ 178 (930)
.+.+ ...+.+|..... +.+..+++|+....- .....-..++++.|.+++..+|+
T Consensus 58 ----------------~~~~--------~~p~~~g~i~~~-~~~e~i~~~~~~~~l-~~~~~~~~vll~~~~~~~~~~r~ 111 (393)
T PF00022_consen 58 ----------------NLEL--------RSPIENGVIVDW-DALEEIWDYIFSNLL-KVDPSDHPVLLTEPPFNPRSQRE 111 (393)
T ss_dssp ----------------GEEE--------EESEETTEESSH-HHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHH
T ss_pred ----------------heee--------eeeccccccccc-ccccccccccccccc-ccccccceeeeeccccCCchhhh
Confidence 0000 001112222222 345556666654321 11122346999999999999999
Q ss_pred HHHHHH-HHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEe
Q 002363 179 GLMQAA-ELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDV 257 (930)
Q Consensus 179 al~~Aa-~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~ 257 (930)
.+.+.+ +..|++-+.+++++.+|+++++.. +-||||+|++.|.|+-|- +|.. +...
T Consensus 112 ~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~--------tglVVD~G~~~t~v~pV~--------------dG~~-~~~~ 168 (393)
T PF00022_consen 112 KLAEILFEKFGVPSVYFIPSPLLALYASGRT--------TGLVVDIGYSSTSVVPVV--------------DGYV-LPHS 168 (393)
T ss_dssp HHHHHHHHTS--SEEEEEEHHHHHHHHTTBS--------SEEEEEESSS-EEEEEEE--------------TTEE--GGG
T ss_pred hhhhhhhcccccceeeeeecccccccccccc--------cccccccceeeeeeeeee--------------eccc-cccc
Confidence 887774 466889999999999999877553 579999999999998872 2221 1111
Q ss_pred cCCCCcchHHHHHHHHHHHHHH-HhhhcCCCCC---CC-CcHHHHHHHHHHHHHHhhhh---cC------------CCcc
Q 002363 258 RWDAELGGQNMELRLVEYFADE-FNKQVGNGVD---VR-KSPKAMAKLKKQVKRTKEIL---SA------------NTMA 317 (930)
Q Consensus 258 ~~d~~lGG~~~D~~L~~~l~~~-f~~~~~~~~d---~~-~~~~~~~kL~~~aek~K~~L---S~------------~~~~ 317 (930)
.....+||.+++..|.++|..+ +.-...+... .. ........-...++.+|+.+ +. ....
T Consensus 169 ~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~ 248 (393)
T PF00022_consen 169 IKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEK 248 (393)
T ss_dssp BEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTE
T ss_pred cccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccce
Confidence 1123799999999999999874 1110000000 00 00000011112222333322 11 1112
Q ss_pred cEEEeecccCcccEEEecHHHHHHHHHHHHH----------------HHHHHHHHHHHHcCCCcC--CccEEEEEcCCCC
Q 002363 318 PISVESLYVDIDFRSSITRQKFEELCEDLWE----------------RSLVPLREVLNYSGLKMD--EIYAVELIGGGTR 379 (930)
Q Consensus 318 ~i~ie~l~~~~d~~~~ItR~efe~l~~~~~~----------------~i~~~i~~~L~~a~~~~~--~I~~ViLvGG~sr 379 (930)
.+.+ -++. .+.+..+.| .+++.+|. .+.++|.+++..+..... -...|+|+||+|+
T Consensus 249 ~~~l---Pdg~--~i~~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~ 322 (393)
T PF00022_consen 249 SYEL---PDGQ--TIILGKERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSL 322 (393)
T ss_dssp EEE----TTSS--EEEESTHHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGG
T ss_pred eccc---cccc--ccccccccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEeccccc
Confidence 2222 2333 456666555 23343333 577888888887654321 2478999999999
Q ss_pred cHHHHHHHHHHhCC-------CccCCCC-CcchhhhcccHHHHhh
Q 002363 380 VPKLQAKLQEYLGR-------TELDRHL-DADEAIVLGASLLAAN 416 (930)
Q Consensus 380 iP~V~~~l~~~fg~-------~~i~~~~-n~deaVa~GAa~~aa~ 416 (930)
+|.+.++|..-+.. -++.... ++..++=.||+++|..
T Consensus 323 i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl 367 (393)
T PF00022_consen 323 IPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASL 367 (393)
T ss_dssp STTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTS
T ss_pred ccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeecc
Confidence 99999999876543 1333344 7888999999999875
No 39
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.23 E-value=5.3e-10 Score=124.51 Aligned_cols=208 Identities=13% Similarity=0.165 Sum_probs=127.9
Q ss_pred ccccEEEeeCCCCCHHHHHHHHHHHHHc---------CCCeeEEechhhHHHHHhccccC-CCCCCcEEEEEEcCCCceE
Q 002363 160 AVKDFVISVPPYFGQAERKGLMQAAELA---------GMNVLSLVNEHSGAALQYGIDKD-FSNESRHVVFYDMGATTTY 229 (930)
Q Consensus 160 ~~~~~VItVPa~f~~~qR~al~~Aa~~A---------Gl~~l~Li~EptAAAl~y~~~~~-~~~~~~~vlv~D~GggT~d 229 (930)
.+..+|+..|..+...+|..+++...-. -+.-+.++.+|.+|.+.|..... .......++|+|+|++|||
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 3557999999999999999998876521 22346789999999888765431 1124567999999999999
Q ss_pred EEEEEEeecccccccceeccceEEEEEecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhh
Q 002363 230 AALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKE 309 (930)
Q Consensus 230 vsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~ 309 (930)
+.++. +..+ +....+....|-.++-..|.+.+.+++. .+.......+.. ....-|.
T Consensus 181 ~~~~~--------------~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g------~~~~~~~~~i~~---~l~~g~~ 236 (320)
T TIGR03739 181 WLVAR--------------GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDIG------TPAYRDIDRIDL---ALRTGKQ 236 (320)
T ss_pred eehcc--------------CCEE-cccccCCchhHHHHHHHHHHHHHHhhcC------CCCccCHHHHHH---HHHhCCc
Confidence 98872 2333 3344555678988888888888876652 221111111111 1111110
Q ss_pred hhcCCCcccEEEeecccCcccEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHH
Q 002363 310 ILSANTMAPISVESLYVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQE 389 (930)
Q Consensus 310 ~LS~~~~~~i~ie~l~~~~d~~~~ItR~efe~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~ 389 (930)
+.+ + +. .+.|+ +.++ .....+.++..-|.+.+ + ...+++.|+|+||++. .+++.|++
T Consensus 237 ---------~~~---~-gk--~~di~-~~~~-~~~~~~~~~v~~i~~~~---~-~~~~~~~Iil~GGGa~--ll~~~l~~ 293 (320)
T TIGR03739 237 ---------PRI---Y-QK--PVDIK-RCLE-LAETVAQQAVSTMMTWI---G-APESIQNIVLVGGGAF--LFKKAVKA 293 (320)
T ss_pred ---------eee---c-ce--ecCch-HHHH-HHHHHHHHHHHHHHHhc---c-cCCcccEEEEeCCcHH--HHHHHHHH
Confidence 001 1 11 11222 1111 22333333333333333 1 1246889999999987 66899999
Q ss_pred HhCCCccCCCCCcchhhhcccHHHH
Q 002363 390 YLGRTELDRHLDADEAIVLGASLLA 414 (930)
Q Consensus 390 ~fg~~~i~~~~n~deaVa~GAa~~a 414 (930)
.|+...+....||..|.|+|-..+|
T Consensus 294 ~f~~~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 294 AFPKHRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred HCCCCeeEecCCcHHHHHHHHHHhh
Confidence 9997555566789999999987665
No 40
>PTZ00281 actin; Provisional
Probab=99.12 E-value=1.7e-09 Score=123.13 Aligned_cols=236 Identities=14% Similarity=0.154 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHhccC--ccccEEEeeCCCCCHHHHHHHHHH-HHHcCCCeeEEechhhHHHHHhccccCCCCCCcE
Q 002363 141 LLAMVLSYAVNLVDTHAKL--AVKDFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRH 217 (930)
Q Consensus 141 l~a~~L~~lk~~a~~~~~~--~~~~~VItVPa~f~~~qR~al~~A-a~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~ 217 (930)
.+..++.|+... .+.. .-..++||-|.++...+|+.+.+. .+..|+.-+.++..+.+++++++. .+
T Consensus 82 ~~e~l~~~~f~~---~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~--------~t 150 (376)
T PTZ00281 82 DMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--------TT 150 (376)
T ss_pred HHHHHHHHHHHh---hccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC--------ce
Confidence 344566665431 2222 234688899999999999998875 566788888899999998876542 46
Q ss_pred EEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHH
Q 002363 218 VVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAM 297 (930)
Q Consensus 218 vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~ 297 (930)
-+|||+|++.|.++-|. .|. .+........+||.++++.|.+.|...- + .+.. . .-
T Consensus 151 glVVDiG~~~t~v~PV~--------------dG~-~~~~~~~~~~~GG~~lt~~L~~lL~~~~-----~--~~~~-~-~~ 206 (376)
T PTZ00281 151 GIVMDSGDGVSHTVPIY--------------EGY-ALPHAILRLDLAGRDLTDYMMKILTERG-----Y--SFTT-T-AE 206 (376)
T ss_pred EEEEECCCceEEEEEEE--------------ecc-cchhheeeccCcHHHHHHHHHHHHHhcC-----C--CCCc-H-HH
Confidence 79999999999987662 221 1222222347999999999998875431 1 1111 0 01
Q ss_pred HHHHHHHHHHhhhhcCCC---c---------ccEEEe-ecccCcccEEEecHHHH---HHHHHHHH-----HHHHHHHHH
Q 002363 298 AKLKKQVKRTKEILSANT---M---------APISVE-SLYVDIDFRSSITRQKF---EELCEDLW-----ERSLVPLRE 356 (930)
Q Consensus 298 ~kL~~~aek~K~~LS~~~---~---------~~i~ie-~l~~~~d~~~~ItR~ef---e~l~~~~~-----~~i~~~i~~ 356 (930)
+..++.+|+.+.--. . ...... .|-++. .+.|..+.| |-|+.|.+ ..+.++|.+
T Consensus 207 ---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LPdg~--~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~ 281 (376)
T PTZ00281 207 ---REIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQ--VITIGNERFRCPEALFQPSFLGMESAGIHETTYN 281 (376)
T ss_pred ---HHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECCCCC--EEEeeHHHeeCcccccChhhcCCCCCCHHHHHHH
Confidence 123455555543110 0 000111 122332 345665555 33444422 246677778
Q ss_pred HHHHcCCC--cCCccEEEEEcCCCCcHHHHHHHHHHhCCC-------ccCCCCCcchhhhcccHHHHhh
Q 002363 357 VLNYSGLK--MDEIYAVELIGGGTRVPKLQAKLQEYLGRT-------ELDRHLDADEAIVLGASLLAAN 416 (930)
Q Consensus 357 ~L~~a~~~--~~~I~~ViLvGG~sriP~V~~~l~~~fg~~-------~i~~~~n~deaVa~GAa~~aa~ 416 (930)
++..+... ..-.+.|+|+||+|.+|.+.++|..-+... ++..+.++..++=+||+++|..
T Consensus 282 sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 282 SIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASL 350 (376)
T ss_pred HHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccCc
Confidence 87766432 223478999999999999999888655321 2334456677888899888773
No 41
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.11 E-value=7.9e-09 Score=116.89 Aligned_cols=161 Identities=16% Similarity=0.220 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHcCCCeeEEechhhHHHHHhc-cccCC--CCCCc-EEEEEEcCCCceEEEEEEEeecccccccceecc
Q 002363 174 QAERKGLMQAAELAGMNVLSLVNEHSGAALQYG-IDKDF--SNESR-HVVFYDMGATTTYAALVYFSAYNAKVYGKTVSV 249 (930)
Q Consensus 174 ~~qR~al~~Aa~~AGl~~l~Li~EptAAAl~y~-~~~~~--~~~~~-~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~ 249 (930)
....+.+.++++.||+++..+.-+|.|.+=.+. +...+ ..... .++++|+|+++|+++++. +
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~--------------~ 207 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLH--------------P 207 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEE--------------C
Confidence 345778889999999999999888888765442 11101 11223 499999999999999994 3
Q ss_pred ceEEEEEecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCCcccEEEeecccCcc
Q 002363 250 NQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDID 329 (930)
Q Consensus 250 ~~~~vl~~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~i~ie~l~~~~d 329 (930)
+.+.... ...+||.+|++.|.+.+ +.+ ..+||+.|..-.... ..
T Consensus 208 g~~~~~r---~i~~G~~~i~~~i~~~~----------~~~-----------~~~Ae~~k~~~~~~~-----------~~- 251 (348)
T TIGR01175 208 GRMLFTR---EVPFGTRQLTSELSRAY----------GLN-----------PEEAGEAKQQGGLPL-----------LY- 251 (348)
T ss_pred CeEEEEE---EeechHHHHHHHHHHHc----------CCC-----------HHHHHHHHhcCCCCC-----------ch-
Confidence 4333222 24799999998886433 222 356777776432111 00
Q ss_pred cEEEecHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCcCCccEEEEEcCCCCcHHHHHHHHHHhCC
Q 002363 330 FRSSITRQKFEELCEDLWERSLVPLREVLNYS--GLKMDEIYAVELIGGGTRVPKLQAKLQEYLGR 393 (930)
Q Consensus 330 ~~~~ItR~efe~l~~~~~~~i~~~i~~~L~~a--~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~ 393 (930)
-.++++++++++..-|.+.|+-. ......++.|+|+||+++++.+.+.+++.||-
T Consensus 252 ---------~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~ 308 (348)
T TIGR01175 252 ---------DPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGL 308 (348)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCC
Confidence 02345566666666666666432 23344689999999999999999999999985
No 42
>PTZ00004 actin-2; Provisional
Probab=99.11 E-value=2.1e-09 Score=122.67 Aligned_cols=237 Identities=13% Similarity=0.125 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHHHHhcc--CccccEEEeeCCCCCHHHHHHHHHH-HHHcCCCeeEEechhhHHHHHhccccCCCCCCc
Q 002363 140 ELLAMVLSYAVNLVDTHAK--LAVKDFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGIDKDFSNESR 216 (930)
Q Consensus 140 el~a~~L~~lk~~a~~~~~--~~~~~~VItVPa~f~~~qR~al~~A-a~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~ 216 (930)
+.+..++.|+.. ..++ ..-..+++|-|.++...+|+.+.+. .+..|++.+.++.++.+++++++. .
T Consensus 81 d~~e~i~~~~~~---~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~--------~ 149 (378)
T PTZ00004 81 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR--------T 149 (378)
T ss_pred HHHHHHHHHHHH---hhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC--------c
Confidence 344556666432 1222 2234678999999999999887776 456799988999999999877642 4
Q ss_pred EEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHH
Q 002363 217 HVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKA 296 (930)
Q Consensus 217 ~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~ 296 (930)
+-+|+|+|++.|+++-|. +|.. +.......++||++++..|.+.|...- +.......
T Consensus 150 tglVVDiG~~~t~v~pV~--------------dG~~-l~~~~~~~~~GG~~lt~~L~~lL~~~~-----~~~~~~~~--- 206 (378)
T PTZ00004 150 TGIVLDSGDGVSHTVPIY--------------EGYS-LPHAIHRLDVAGRDLTEYMMKILHERG-----TTFTTTAE--- 206 (378)
T ss_pred eEEEEECCCCcEEEEEEE--------------CCEE-eecceeeecccHHHHHHHHHHHHHhcC-----CCCCcHHH---
Confidence 679999999999998872 2322 222222347999999999999885431 11111111
Q ss_pred HHHHHHHHHHHhhhhcCCC------------c-ccEEEe-ecccCcccEEEecHHHHH---HHHHHH------HHHHHHH
Q 002363 297 MAKLKKQVKRTKEILSANT------------M-APISVE-SLYVDIDFRSSITRQKFE---ELCEDL------WERSLVP 353 (930)
Q Consensus 297 ~~kL~~~aek~K~~LS~~~------------~-~~i~ie-~l~~~~d~~~~ItR~efe---~l~~~~------~~~i~~~ 353 (930)
...++.+|+.+..-. . ...... .|.++. .+.|..+.|. -++.|- ...+.++
T Consensus 207 ----~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lPdg~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~ 280 (378)
T PTZ00004 207 ----KEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELPDGT--IITVGSERFRCPEALFQPSLIGKEEPPGIHEL 280 (378)
T ss_pred ----HHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECCCCC--EEEEcHHHeeCcccccChhhcCccccCChHHH
Confidence 122344444432100 0 000111 122333 3455665552 344542 2356677
Q ss_pred HHHHHHHcCCC--cCCccEEEEEcCCCCcHHHHHHHHHHhCC----C---ccCCCCCcchhhhcccHHHHhh
Q 002363 354 LREVLNYSGLK--MDEIYAVELIGGGTRVPKLQAKLQEYLGR----T---ELDRHLDADEAIVLGASLLAAN 416 (930)
Q Consensus 354 i~~~L~~a~~~--~~~I~~ViLvGG~sriP~V~~~l~~~fg~----~---~i~~~~n~deaVa~GAa~~aa~ 416 (930)
|.+++..+... ..-...|+|+||+|.+|.+.++|..-+.. . ++..+.++..++=+||+++|..
T Consensus 281 i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas~ 352 (378)
T PTZ00004 281 TFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSSL 352 (378)
T ss_pred HHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccCc
Confidence 88888776432 22347899999999999999998866532 1 2333456667777888888763
No 43
>PTZ00452 actin; Provisional
Probab=99.11 E-value=3.7e-09 Score=120.20 Aligned_cols=235 Identities=17% Similarity=0.132 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHHHHH-HHcCCCeeEEechhhHHHHHhccccCCCCCCcEEE
Q 002363 141 LLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAA-ELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVV 219 (930)
Q Consensus 141 l~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vl 219 (930)
.+..++.|+....- .....-..++||-|++.+..+|+.+.+.+ +..+++.+.+.+.+.+++++++. .+-|
T Consensus 81 ~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~--------~tgl 151 (375)
T PTZ00452 81 DIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK--------TIGL 151 (375)
T ss_pred HHHHHHHHHHHhhc-CCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC--------ceee
Confidence 33456666642211 12222356899999999999999887764 55688888888888888876542 4679
Q ss_pred EEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHH
Q 002363 220 FYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAK 299 (930)
Q Consensus 220 v~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~k 299 (930)
|+|+|.|.|+++-|. .|.. +........+||.+++..|.+.|... +..+.... .
T Consensus 152 VVDiG~~~t~v~PV~--------------dG~~-l~~~~~r~~~gG~~lt~~L~~lL~~~-------~~~~~~~~-~--- 205 (375)
T PTZ00452 152 VVDSGEGVTHCVPVF--------------EGHQ-IPQAITKINLAGRLCTDYLTQILQEL-------GYSLTEPH-Q--- 205 (375)
T ss_pred eecCCCCcceEEEEE--------------CCEE-eccceEEeeccchHHHHHHHHHHHhc-------CCCCCCHH-H---
Confidence 999999999998772 2221 11112224799999999998887532 11111110 0
Q ss_pred HHHHHHHHhhhhcCCC----------------cccEEEeecccCcccEEEecHHHH---HHHHHHHH-----HHHHHHHH
Q 002363 300 LKKQVKRTKEILSANT----------------MAPISVESLYVDIDFRSSITRQKF---EELCEDLW-----ERSLVPLR 355 (930)
Q Consensus 300 L~~~aek~K~~LS~~~----------------~~~i~ie~l~~~~d~~~~ItR~ef---e~l~~~~~-----~~i~~~i~ 355 (930)
+..++.+|+.+.--. ...+. |-++. .+.|..+.| |-|++|.+ ..+.++|.
T Consensus 206 -~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~---LPDg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~ 279 (375)
T PTZ00452 206 -RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYK---LPDGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAY 279 (375)
T ss_pred -HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEE---CCCCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHH
Confidence 112333444432110 01122 22333 356677666 23334422 24667778
Q ss_pred HHHHHcCCC--cCCccEEEEEcCCCCcHHHHHHHHHHhCC----C---ccCCCCCcchhhhcccHHHHhh
Q 002363 356 EVLNYSGLK--MDEIYAVELIGGGTRVPKLQAKLQEYLGR----T---ELDRHLDADEAIVLGASLLAAN 416 (930)
Q Consensus 356 ~~L~~a~~~--~~~I~~ViLvGG~sriP~V~~~l~~~fg~----~---~i~~~~n~deaVa~GAa~~aa~ 416 (930)
+++..+... ..-...|+|+||+|.+|.+.++|..-+.. . ++..+.+...++=+||+++|..
T Consensus 280 ~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilasl 349 (375)
T PTZ00452 280 SSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCTL 349 (375)
T ss_pred HHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcCc
Confidence 888776432 23357899999999999999998865532 1 2333345556777788888763
No 44
>PTZ00466 actin-like protein; Provisional
Probab=99.07 E-value=7.5e-09 Score=117.80 Aligned_cols=237 Identities=13% Similarity=0.105 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHHHHH-HHcCCCeeEEechhhHHHHHhccccCCCCCCcEEE
Q 002363 141 LLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAA-ELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVV 219 (930)
Q Consensus 141 l~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vl 219 (930)
.+..++.|+.+... ....-..+++|-|+.+...+|+.+.+.+ +..|++-+.+.+.+.+|+++++. .+-+
T Consensus 88 ~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~--------~tgl 157 (380)
T PTZ00466 88 DMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK--------TNGT 157 (380)
T ss_pred HHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC--------ceEE
Confidence 34555666543211 1112346888999999999999987764 55688888888988888876642 4789
Q ss_pred EEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHH
Q 002363 220 FYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAK 299 (930)
Q Consensus 220 v~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~k 299 (930)
|+|+|.+.|.++-|. .|.. +........+||++++..|.+.+.+. ++..+...
T Consensus 158 VVD~G~~~t~v~PV~--------------~G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~~~------- 210 (380)
T PTZ00466 158 VLDCGDGVCHCVSIY--------------EGYS-ITNTITRTDVAGRDITTYLGYLLRKN-----GHLFNTSA------- 210 (380)
T ss_pred EEeCCCCceEEEEEE--------------CCEE-eecceeEecCchhHHHHHHHHHHHhc-----CCCCCcHH-------
Confidence 999999999997762 2221 22222234799999999999887532 11111111
Q ss_pred HHHHHHHHhhhhcC---CC--------cccEEEe-ecccCcccEEEecHHHH---HHHHHHHH-----HHHHHHHHHHHH
Q 002363 300 LKKQVKRTKEILSA---NT--------MAPISVE-SLYVDIDFRSSITRQKF---EELCEDLW-----ERSLVPLREVLN 359 (930)
Q Consensus 300 L~~~aek~K~~LS~---~~--------~~~i~ie-~l~~~~d~~~~ItR~ef---e~l~~~~~-----~~i~~~i~~~L~ 359 (930)
-+..++.+|+.+.- +. ....... .|-++. .+.|..+.| |-++.|-+ ..+.++|.+++.
T Consensus 211 ~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LPdg~--~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~ 288 (380)
T PTZ00466 211 EMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILPDGS--QILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSIT 288 (380)
T ss_pred HHHHHHHHHHhCeEecCChHHHHhhccccccceeEECCCCc--EEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHH
Confidence 12233444544321 00 0000011 122333 346666666 33344321 146677777777
Q ss_pred HcCCC--cCCccEEEEEcCCCCcHHHHHHHHHHhCCC-------ccCCCCCcchhhhcccHHHHhh
Q 002363 360 YSGLK--MDEIYAVELIGGGTRVPKLQAKLQEYLGRT-------ELDRHLDADEAIVLGASLLAAN 416 (930)
Q Consensus 360 ~a~~~--~~~I~~ViLvGG~sriP~V~~~l~~~fg~~-------~i~~~~n~deaVa~GAa~~aa~ 416 (930)
.+... ..-...|+|+||+|.+|.+.++|..-+... .+..+.++..++=+||+++|..
T Consensus 289 ~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilasl 354 (380)
T PTZ00466 289 RADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILASL 354 (380)
T ss_pred hCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcCc
Confidence 76433 223578999999999999999998766321 2333445566777788888763
No 45
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=98.97 E-value=7.9e-08 Score=108.17 Aligned_cols=180 Identities=19% Similarity=0.252 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHcCCCeeEEechhhHHHHHhccc-cCCC--CCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceE
Q 002363 176 ERKGLMQAAELAGMNVLSLVNEHSGAALQYGID-KDFS--NESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQF 252 (930)
Q Consensus 176 qR~al~~Aa~~AGl~~l~Li~EptAAAl~y~~~-~~~~--~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~ 252 (930)
.-....++++.|||++..+=-++.|.+=.|... ..++ .....++++|+|+.++.++++. ++.+
T Consensus 137 ~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--------------~g~~ 202 (340)
T PF11104_consen 137 IVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--------------NGKP 202 (340)
T ss_dssp HHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--------------TTEE
T ss_pred HHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--------------CCEE
Confidence 456677889999999865533444432222221 1222 2346899999999999999984 3433
Q ss_pred EEEEecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCCcccEEEeecccCcccEE
Q 002363 253 QVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRS 332 (930)
Q Consensus 253 ~vl~~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~ 332 (930)
... ....+||.+|++.|++.+.-.+ .+|++.|..-+-. +
T Consensus 203 ~f~---R~i~~G~~~l~~~i~~~~~i~~---------------------~~Ae~~k~~~~l~-----------~------ 241 (340)
T PF11104_consen 203 IFS---RSIPIGGNDLTEAIARELGIDF---------------------EEAEELKRSGGLP-----------E------ 241 (340)
T ss_dssp EEE---EEES-SHHHHHHHHHHHTT--H---------------------HHHHHHHHHT---------------------
T ss_pred EEE---EEEeeCHHHHHHHHHHhcCCCH---------------------HHHHHHHhcCCCC-----------c------
Confidence 221 1237999999999987653222 3455555431100 0
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCC--------ccCCCCC-
Q 002363 333 SITRQKFEELCEDLWERSLVPLREVLNY--SGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT--------ELDRHLD- 401 (930)
Q Consensus 333 ~ItR~efe~l~~~~~~~i~~~i~~~L~~--a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~--------~i~~~~n- 401 (930)
+...+.+.++++++..-|.+.|+- +......|+.|+|+||++++|.+.+.|.+.|+-. .+....+
T Consensus 242 ----~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~ 317 (340)
T PF11104_consen 242 ----EYDQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKI 317 (340)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS
T ss_pred ----chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCccc
Confidence 222345566666666666666652 2334558999999999999999999999999863 1111112
Q ss_pred ---------cchhhhcccHHHH
Q 002363 402 ---------ADEAIVLGASLLA 414 (930)
Q Consensus 402 ---------~deaVa~GAa~~a 414 (930)
|+.++|.|.|+++
T Consensus 318 ~~~~~~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 318 NSEYLQEDAPQFAVALGLALRG 339 (340)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhhhhHHHHHHHHhhcC
Confidence 5568888888764
No 46
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.68 E-value=3.5e-07 Score=101.70 Aligned_cols=172 Identities=19% Similarity=0.220 Sum_probs=97.0
Q ss_pred eeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEE-EEEecCCCCcchHHHH
Q 002363 191 VLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQ-VKDVRWDAELGGQNME 269 (930)
Q Consensus 191 ~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~-vl~~~~d~~lGG~~~D 269 (930)
.+.++.|+.||.+.+...- . +...++|+|+||+|+|++++. +.+. +-...+...+|-..+-
T Consensus 142 ~V~V~PQ~~~A~~~~~~~~--~-~~~~~lVVDIGG~T~Dv~~v~---------------~~~~~~~~~~~~~~~Gvs~~~ 203 (318)
T PF06406_consen 142 DVEVFPQSVGAVFDALMDL--D-EDESVLVVDIGGRTTDVAVVR---------------GGLPDISKCSGTPEIGVSDLY 203 (318)
T ss_dssp EEEEEESSHHHHHHHHHTS----TTSEEEEEEE-SS-EEEEEEE---------------GGG--EEEEEEETTSSTHHHH
T ss_pred eEEEEcccHHHHHHHHHhh--c-ccCcEEEEEcCCCeEEeeeec---------------CCccccchhccCCchhHHHHH
Confidence 4678999999999876552 2 236799999999999999983 1122 2233445678988888
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCCcccEEEeecccCcccEEEecHHHHHHHHHHHHHH
Q 002363 270 LRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELCEDLWER 349 (930)
Q Consensus 270 ~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~ItR~efe~l~~~~~~~ 349 (930)
..+.+.|.... .. .+......+..... -+..++. ...+.+ .++++.++++..+.+
T Consensus 204 ~~I~~~l~~~~-~~--------~s~~~~~~ii~~~~-~~~~~~~----------~i~~~~-----~~~~v~~~i~~~~~~ 258 (318)
T PF06406_consen 204 DAIAQALRSAG-ID--------TSELQIDDIIRNRK-DKGYLRQ----------VINDED-----VIDDVSEVIEEAVEE 258 (318)
T ss_dssp HHHHHHTT--S-BH--------HHHHHHHHHHHTTT--HHHHHH----------HSSSHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CC--------CcHHHHHHHHHhhh-ccceecc----------cccchh-----hHHHHHHHHHHHHHH
Confidence 88877775511 00 00001111111000 0000110 001110 134444555555555
Q ss_pred HHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhC--CCccCCCCCcchhhhcccH
Q 002363 350 SLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLG--RTELDRHLDADEAIVLGAS 411 (930)
Q Consensus 350 i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg--~~~i~~~~n~deaVa~GAa 411 (930)
+..-|.+.+. ...+++.|+|+||++ ..+.+.|++.|+ ...+...-||+.|-|+|-+
T Consensus 259 l~~~i~~~~~----~~~~~~~I~~vGGGA--~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 259 LINRILRELG----DFSDIDRIFFVGGGA--ILLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp HHHHHHHHHT----TS-S-SEEEEESTTH--HHHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred HHHHHHHHHh----hhccCCeEEEECCcH--HHHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 5555555553 235788999999997 577899999987 3466677799999999854
No 47
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.58 E-value=1.2e-06 Score=98.62 Aligned_cols=160 Identities=16% Similarity=0.112 Sum_probs=91.9
Q ss_pred cccEEEeeCCCCCHHHHHHHHHHHHH------------cCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCce
Q 002363 161 VKDFVISVPPYFGQAERKGLMQAAEL------------AGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTT 228 (930)
Q Consensus 161 ~~~~VItVPa~f~~~qR~al~~Aa~~------------AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~ 228 (930)
..-.+||.+...-++ +.++++. ||+++-.++. |-|++.+-.. . ++...++++|+|||||
T Consensus 88 ~~ahIITg~~~~~~N----l~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLs-e---Eke~gVa~IDIGgGTT 158 (475)
T PRK10719 88 SGAVIITGETARKEN----AREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLS-E---ERNTRVLNIDIGGGTA 158 (475)
T ss_pred ccEEEEEechhHHHH----HHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhh-h---hccCceEEEEeCCCce
Confidence 345688888775444 4455554 6777766666 8887765432 2 4557899999999999
Q ss_pred EEEEEEEeecccccccceeccceEEEEEecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHh
Q 002363 229 YAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTK 308 (930)
Q Consensus 229 dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K 308 (930)
+++++. .+.+.-.. ...+||+.+... - .+ .+..-....++|.+.+ -
T Consensus 159 ~iaVf~--------------~G~l~~T~---~l~vGG~~IT~D-~------------~~-~i~yis~~~~~l~~~~---~ 204 (475)
T PRK10719 159 NYALFD--------------AGKVIDTA---CLNVGGRLIETD-S------------QG-RVTYISPPGQMILDEL---G 204 (475)
T ss_pred EEEEEE--------------CCEEEEEE---EEecccceEEEC-C------------CC-CEEEEChHHHHHHHHc---C
Confidence 999994 44433222 247898887432 0 00 0000011122222111 0
Q ss_pred hhhcCCCcccEEEeecccCcccEEEecHHHHHHHHHHHHHHHHHHHHH-------HHHH-cCCC-cCCccEEEEEcCCCC
Q 002363 309 EILSANTMAPISVESLYVDIDFRSSITRQKFEELCEDLWERSLVPLRE-------VLNY-SGLK-MDEIYAVELIGGGTR 379 (930)
Q Consensus 309 ~~LS~~~~~~i~ie~l~~~~d~~~~ItR~efe~l~~~~~~~i~~~i~~-------~L~~-a~~~-~~~I~~ViLvGG~sr 379 (930)
..+ .. --.++.+++..+|+.+.+-+.+.|.. .|-. -.++ ...++.|.+.||-+.
T Consensus 205 ~~~-------------~~----G~~~~~~~L~~i~~~Ma~~l~~~i~~~~~~~~~~l~~~~~l~~~~~~~~i~fSGGVad 267 (475)
T PRK10719 205 LAI-------------TD----GRSLTGEQLQQVTRRMAELLVEVIGGALSPLAQALMTTKLLPAGVPPEIITFSGGVGD 267 (475)
T ss_pred CCc-------------cc----cccCCHHHHHHHHHHHHHHHHHHhCCCCChhHHhhccCCCCCCCCCCCEEEEecchHh
Confidence 000 11 12667788888888776666655541 1111 1233 357899999999876
Q ss_pred c
Q 002363 380 V 380 (930)
Q Consensus 380 i 380 (930)
.
T Consensus 268 ~ 268 (475)
T PRK10719 268 C 268 (475)
T ss_pred h
Confidence 5
No 48
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.55 E-value=3e-06 Score=97.31 Aligned_cols=192 Identities=14% Similarity=0.187 Sum_probs=108.5
Q ss_pred EEEEcCccceEEEEEEeeCCCCCEEEeeCCCCCcc-ceEEEE-EeCCcEEEcHhHHhhHhhCccchHhHhhhhhCCCchh
Q 002363 27 SSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRK-SPALVA-FHESTRLLGEEASGIIARYPHRVYSQLRDMIGKPFKQ 104 (930)
Q Consensus 27 vGIDfGTt~s~va~~~~~~g~~~v~iv~n~~~~r~-~PS~V~-~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~~ 104 (930)
+-||.||.++++++. .+. .|..|..+-.+++. ..++.. -..+.+.+|.++...... +.
T Consensus 9 iVIDnGS~~~k~Gfa--g~~-~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~-~~---------------- 68 (444)
T COG5277 9 IVIDNGSGTTKAGFA--GND-TPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDN-SL---------------- 68 (444)
T ss_pred EEEeCCCceEEeeec--CCC-CceeecccccccccccccccccccccccccCchhhhccCC-cc----------------
Confidence 899999999999998 333 57667666666554 333222 112334455544321110 00
Q ss_pred hHhhHhhcCCCceEEECCCCceEEEeCCCceecHHHHHHHHHHHHHHHHHHhcc--CccccEEEeeCCCCCHHHHHHHHH
Q 002363 105 VKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAK--LAVKDFVISVPPYFGQAERKGLMQ 182 (930)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~--~~~~~~VItVPa~f~~~qR~al~~ 182 (930)
......+.+|..... +....+++|+...- .++. ..-..+++|-|..+...+|..+.+
T Consensus 69 -------------------~~~~~p~~~g~i~~W-~~~e~~w~~~~~~~-~~~~~~~~~~pllltep~~n~~~~re~~~e 127 (444)
T COG5277 69 -------------------LELRYPIENGIILNW-DAMEQIWDYTFFNK-GDLLPSPEEHPLLLTEPPLNPPSNREKITE 127 (444)
T ss_pred -------------------ceeecccccCccCCc-HHHHHHHHHhhcch-hhccCCCcCCceEEeccCCCcHHHHHHHHH
Confidence 000011112211111 23344555554332 1111 123479999999999999887776
Q ss_pred HH-HHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCC
Q 002363 183 AA-ELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDA 261 (930)
Q Consensus 183 Aa-~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~ 261 (930)
.+ +...+..+.+...+.+ ..|+..+. ..+.+|+|+|.+.|+|+=|- +| +.+.....-.
T Consensus 128 ~~fE~~~vp~~~~~~~~~l--~~ya~g~~----~~~g~ViD~G~~~t~v~PV~--------------DG-~~l~~a~~ri 186 (444)
T COG5277 128 LLFETLNVPALYLAIQAVL--SLYASGSS----DETGLVIDSGDSVTHVIPVV--------------DG-IVLPKAVKRI 186 (444)
T ss_pred HHHHhcCCcceEeeHHHHH--HHHhcCCC----CCceEEEEcCCCceeeEeee--------------cc-ccccccceee
Confidence 63 4444444445544444 44544431 14899999999999998772 11 2222222334
Q ss_pred CcchHHHHHHHHHHHHHHH
Q 002363 262 ELGGQNMELRLVEYFADEF 280 (930)
Q Consensus 262 ~lGG~~~D~~L~~~l~~~f 280 (930)
.+||++++..|.+.|....
T Consensus 187 ~~gG~~it~~l~~lL~~~~ 205 (444)
T COG5277 187 DIGGRDITDYLKKLLREKY 205 (444)
T ss_pred ecCcHHHHHHHHHHHhhcc
Confidence 7999999999999888743
No 49
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=98.40 E-value=1.3e-05 Score=86.66 Aligned_cols=116 Identities=21% Similarity=0.234 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHHHH-HHHcCCCeeEEechhhHHHHHhccccCCCCCCcEE
Q 002363 140 ELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHV 218 (930)
Q Consensus 140 el~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~A-a~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~v 218 (930)
+++.++++|..+.--. ..-.-.-++||-|++=+.+.|+.+.+. .+...++...|..+++++|++-| + .+.
T Consensus 86 D~~~~~w~~~~~~~Lk-~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G--r------sta 156 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQLK-VNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG--R------STA 156 (426)
T ss_pred HHHHHHHHHHHhhhhh-cCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC--C------Cce
Confidence 4666777777642211 122234689999999999999888776 45566677788888888887543 2 578
Q ss_pred EEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCCcchHHHHHHHHHHHHHH
Q 002363 219 VFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADE 279 (930)
Q Consensus 219 lv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~~~ 279 (930)
||+|+|++++.|+-|. +|.+--.++.. ..+||.-|+..+.+.|..+
T Consensus 157 lVvDiGa~~~svsPV~--------------DG~Vlqk~vvk-s~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 157 LVVDIGATHTSVSPVH--------------DGYVLQKGVVK-SPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred EEEEecCCCceeeeee--------------cceEeeeeeEe-cccchHHHHHHHHHHHhhc
Confidence 9999999999999873 34333334433 4899999999999999876
No 50
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.36 E-value=0.00013 Score=78.06 Aligned_cols=160 Identities=21% Similarity=0.283 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCCeeEEechhhHHHHHhcc-ccCCCCC--CcEEEEEEcCCCceEEEEEEEeecccccccceeccceEE
Q 002363 177 RKGLMQAAELAGMNVLSLVNEHSGAALQYGI-DKDFSNE--SRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQ 253 (930)
Q Consensus 177 R~al~~Aa~~AGl~~l~Li~EptAAAl~y~~-~~~~~~~--~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~ 253 (930)
-....+|++.|||.+.-+=-|.-|.-=+|.. -..+..+ ...|+|+|+|+..+.++++. +++
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~--------------~gk-- 214 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQ--------------DGK-- 214 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEE--------------CCe--
Confidence 3456789999999875444455554333431 1122222 23479999999999999984 222
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCCcccEEEeecccCcccEEE
Q 002363 254 VKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSS 333 (930)
Q Consensus 254 vl~~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~ 333 (930)
.+ +..+-.+||+.+...|.+.+ ..+. ..++.+|....-.. |+..
T Consensus 215 ~l-y~r~~~~g~~Qlt~~i~r~~----------~L~~-----------~~a~~~k~~~~~P~-------------~y~~- 258 (354)
T COG4972 215 IL-YTREVPVGTDQLTQEIQRAY----------SLTE-----------EKAEEIKRGGTLPT-------------DYGS- 258 (354)
T ss_pred ee-eEeeccCcHHHHHHHHHHHh----------CCCh-----------hHhHHHHhCCCCCC-------------chhH-
Confidence 11 22345899999999886544 2221 23445554333221 1111
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCC
Q 002363 334 ITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGR 393 (930)
Q Consensus 334 ItR~efe~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~ 393 (930)
+-+.....++.++|.+.|+-.+..++ ..+|++|+|.||+.++-.+.++|.+.++-
T Consensus 259 ---~vl~~f~~~l~~ei~Rslqfy~~~s~--~~~id~i~LaGggA~l~gL~~~i~qrl~~ 313 (354)
T COG4972 259 ---EVLRPFLGELTQEIRRSLQFYLSQSE--MVDIDQILLAGGGASLEGLAAAIQQRLSI 313 (354)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhccc--cceeeEEEEecCCcchhhHHHHHHHHhCC
Confidence 11122233344444444444444444 45899999999999999999999999874
No 51
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.14 E-value=0.00045 Score=84.43 Aligned_cols=335 Identities=17% Similarity=0.179 Sum_probs=183.2
Q ss_pred EEcHhHHhhHhh----CccchHhHhhhhhCCCchhhHhhH------hhc------CCCceEEECCCCceEEEe-C--CC-
Q 002363 74 LLGEEASGIIAR----YPHRVYSQLRDMIGKPFKQVKHLI------DSL------YLPFNVVEDSRGAVSFKI-D--EN- 133 (930)
Q Consensus 74 ~~G~~A~~~~~~----~p~~~~~~~K~llG~~~~~~~~~~------~~~------~~~~~~~~~~~~~~~~~~-~--~~- 133 (930)
-+|.+|..++.. .....+++.||.|-...+..+... +.. ..|+.-..+..|.+...+ . ..
T Consensus 331 RVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r~ 410 (1002)
T PF07520_consen 331 RVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDERL 410 (1002)
T ss_pred eecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCccccC
Confidence 479999887653 344557888998865322211100 000 011111112345554433 1 10
Q ss_pred ----ceecHHHHHHHHHHHHHHHHHHhccC--------------ccccEEEeeCCCCCHHHHHHHHHHHHHc--------
Q 002363 134 ----NNFSVEELLAMVLSYAVNLVDTHAKL--------------AVKDFVISVPPYFGQAERKGLMQAAELA-------- 187 (930)
Q Consensus 134 ----~~~~~eel~a~~L~~lk~~a~~~~~~--------------~~~~~VItVPa~f~~~qR~al~~Aa~~A-------- 187 (930)
-.||-..++.++|..+..+|-.+.+. ....+++|||+-....+|+.++.+++.|
T Consensus 411 pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~l 490 (1002)
T PF07520_consen 411 PVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKAL 490 (1002)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 24666778888888888777666532 2568999999999999999998887765
Q ss_pred CCC---------------------eeEEechhhHHHHHhcc------------------cc-C-C------CCCCcEEEE
Q 002363 188 GMN---------------------VLSLVNEHSGAALQYGI------------------DK-D-F------SNESRHVVF 220 (930)
Q Consensus 188 Gl~---------------------~l~Li~EptAAAl~y~~------------------~~-~-~------~~~~~~vlv 220 (930)
|.. +.-=-+|.||.=+-|.. .+ + . ....-+|.-
T Consensus 491 Gw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriAS 570 (1002)
T PF07520_consen 491 GWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIAS 570 (1002)
T ss_pred CCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEE
Confidence 432 11113455554333311 11 0 0 112357999
Q ss_pred EEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCCcchHHHHHHH-HHHHHHHHhhhcC--------------
Q 002363 221 YDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRL-VEYFADEFNKQVG-------------- 285 (930)
Q Consensus 221 ~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L-~~~l~~~f~~~~~-------------- 285 (930)
+|+||||||+.|-.|........-..+.+.. +-..| -.+.|.||=..+ ..++...+.+...
T Consensus 571 IDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q---~FReG-FkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~L 646 (1002)
T PF07520_consen 571 IDIGGGTTDLMITQYRLDDGQGSNVKITPEQ---LFREG-FKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRL 646 (1002)
T ss_pred EecCCCcceeeEEEEEeccCCcceeEECcch---hhhhh-cccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHH
Confidence 9999999999999987432110000111111 11122 257777776555 4455544443210
Q ss_pred CCCCCCCc-HH-------------HHHHHHHHHHHHhhhhcCCCcccEEEeecc--------------------------
Q 002363 286 NGVDVRKS-PK-------------AMAKLKKQVKRTKEILSANTMAPISVESLY-------------------------- 325 (930)
Q Consensus 286 ~~~d~~~~-~~-------------~~~kL~~~aek~K~~LS~~~~~~i~ie~l~-------------------------- 325 (930)
.+-+-... .+ ...+++.++|..-.. +........+..++
T Consensus 647 fG~dg~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~-~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~ 725 (1002)
T PF07520_consen 647 FGGDGQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPL-DPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPD 725 (1002)
T ss_pred hCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCC
Confidence 11110000 00 012334445442210 00111111111111
Q ss_pred -cCcccEEEecHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCC-------
Q 002363 326 -VDIDFRSSITRQKFEELCE---DLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT------- 394 (930)
Q Consensus 326 -~~~d~~~~ItR~efe~l~~---~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~------- 394 (930)
+=.|+.+.|+..++...+- -.|..+...+-+++..- +.|-|+|+|--||+|.||..+.+..+..
T Consensus 726 Fdildv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y-----~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l 800 (1002)
T PF07520_consen 726 FDILDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHY-----DCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPL 800 (1002)
T ss_pred cceecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHh-----CCCEEEEcCCccccHHHHHHHHHhCCCCcccEEec
Confidence 1134556899999988764 45555555555666544 4567999999999999999999887542
Q ss_pred ------------ccCCCCCcchhhhcccHHHHhhhc
Q 002363 395 ------------ELDRHLDADEAIVLGASLLAANLS 418 (930)
Q Consensus 395 ------------~i~~~~n~deaVa~GAa~~aa~ls 418 (930)
+-.+--||...||+||.+.+....
T Consensus 801 ~~Y~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 801 HGYRTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred CCeeecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 112334899999999998866544
No 52
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=98.07 E-value=2.5e-05 Score=86.66 Aligned_cols=210 Identities=20% Similarity=0.185 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEE
Q 002363 143 AMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYD 222 (930)
Q Consensus 143 a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D 222 (930)
..+.+|+...-.... -...-+++|-|+.+...-|+.+-+..-. -|++-.+.-.. .|.+ |+..+ .+=+|+|
T Consensus 82 e~iw~~if~~~L~~~-Pee~pvllte~pl~p~~nREk~tqi~FE-~fnvpa~yva~-qavl-ya~g~------ttG~VvD 151 (372)
T KOG0676|consen 82 EKIWHHLFYSELLVA-PEEHPVLLTEPPLNPKANREKLTQIMFE-TFNVPALYVAI-QAVL-YASGR------TTGLVVD 151 (372)
T ss_pred HHHHHHHHHHhhccC-cccCceEeecCCCCchHhHHHHHHHhhh-hcCccHhHHHH-HHHH-HHcCC------eeEEEEE
Confidence 556666652111111 1224699999999999999888876432 24554444333 3333 66554 5789999
Q ss_pred cCCCceEE-EEEEEeecccccccceeccceEEEEEecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHH
Q 002363 223 MGATTTYA-ALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLK 301 (930)
Q Consensus 223 ~GggT~dv-svv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~ 301 (930)
+|.|-+.+ -|++ | +.+...-....+||+++..-|...|.+. ++ ...... . +
T Consensus 152 ~G~gvt~~vPI~e---------------G-~~lp~ai~~ldl~G~dlt~~l~~~L~~~-----g~--s~~~~~--~---~ 203 (372)
T KOG0676|consen 152 SGDGVTHVVPIYE---------------G-YALPHAILRLDLAGRDLTDYLLKQLRKR-----GY--SFTTSA--E---F 203 (372)
T ss_pred cCCCceeeeeccc---------------c-cccchhhheecccchhhHHHHHHHHHhc-----cc--cccccc--H---H
Confidence 99997654 4442 2 2333334446899999999777666651 11 111110 0 1
Q ss_pred HHHHHHhhhhc-----------C-CCcccEEEe-ecccCcccEEEecHHHHH---HHHHHH-----HHHHHHHHHHHHHH
Q 002363 302 KQVKRTKEILS-----------A-NTMAPISVE-SLYVDIDFRSSITRQKFE---ELCEDL-----WERSLVPLREVLNY 360 (930)
Q Consensus 302 ~~aek~K~~LS-----------~-~~~~~i~ie-~l~~~~d~~~~ItR~efe---~l~~~~-----~~~i~~~i~~~L~~ 360 (930)
.-++.+|+.|+ . +....+... .|-++.- +.+.-+.|. -+++|- ...+.+.+-..+-+
T Consensus 204 eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~lPDg~~--i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~k 281 (372)
T KOG0676|consen 204 EIVRDIKEKLCYVALDFEEEEETANTSSSLESSYELPDGQK--ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMK 281 (372)
T ss_pred HHHHHhHhhhcccccccchhhhcccccccccccccCCCCCE--EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHh
Confidence 11233333332 1 111111110 0222221 444444332 233321 12233334444333
Q ss_pred c--CCCcCCccEEEEEcCCCCcHHHHHHHHHHhC
Q 002363 361 S--GLKMDEIYAVELIGGGTRVPKLQAKLQEYLG 392 (930)
Q Consensus 361 a--~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg 392 (930)
+ ++...-...|+|+||++..|.+-+++.+-+.
T Consensus 282 cd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~ 315 (372)
T KOG0676|consen 282 CDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQ 315 (372)
T ss_pred CChhHhHHHHhheEEeCCcccchhHHHHHHHHHh
Confidence 3 3333445789999999999999998887553
No 53
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=97.87 E-value=0.00015 Score=77.97 Aligned_cols=170 Identities=16% Similarity=0.163 Sum_probs=99.6
Q ss_pred EEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCCcchHHHHHHH
Q 002363 193 SLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRL 272 (930)
Q Consensus 193 ~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L 272 (930)
..++|.+|-+..-.... + ..=.|+|+||..+-+.+++ ++.+.-.........|+..|...+
T Consensus 73 ~~~~ei~~~~~g~~~~~--~---~~~~vidiGgqd~k~i~~~--------------~g~~~~~~~n~~ca~Gtg~f~e~~ 133 (248)
T TIGR00241 73 KIVTEISCHGKGANYLA--P---EARGVIDIGGQDSKVIKID--------------DGKVDDFTMNDKCAAGTGRFLEVT 133 (248)
T ss_pred CceEEhhHHHHHHHHHC--C---CCCEEEEecCCeeEEEEEC--------------CCcEeeeeecCcccccccHHHHHH
Confidence 36778888655322211 1 1225999999988888873 333332334444567777787777
Q ss_pred HHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhh----hcCCCcccEEEee-cccCcccEEEecHHHHHHHHHHHH
Q 002363 273 VEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEI----LSANTMAPISVES-LYVDIDFRSSITRQKFEELCEDLW 347 (930)
Q Consensus 273 ~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~----LS~~~~~~i~ie~-l~~~~d~~~~ItR~efe~l~~~~~ 347 (930)
++.|- +++ .+++.++.. ..-+....+..++ +.... ....++ ++++..++
T Consensus 134 a~~l~----------~~~-----------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~l--~~g~~~---~di~~~~~ 187 (248)
T TIGR00241 134 ARRLG----------VSV-----------EELGSLAEKADRKAKISSMCTVFAESELISLL--AAGVKK---EDILAGVY 187 (248)
T ss_pred HHHcC----------CCH-----------HHHHHHHhcCCCCCCcCCEeEEEechhHHHHH--HCCCCH---HHHHHHHH
Confidence 66553 221 122222211 1111122222221 11110 011233 45566666
Q ss_pred HHHHHHHHHHHHHcCCCcCCcc-EEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHH
Q 002363 348 ERSLVPLREVLNYSGLKMDEIY-AVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLL 413 (930)
Q Consensus 348 ~~i~~~i~~~L~~a~~~~~~I~-~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~ 413 (930)
..+...+.+.+...+ ++ .|+|+||.++.|++.+.+.+.++. ++..+.++..+.|+|||++
T Consensus 188 ~~va~~i~~~~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~-~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 188 ESIAERVAEMLQRLK-----IEAPIVFTGGVSKNKGLVKALEKKLGM-KVITPPEPQIVGAVGAALL 248 (248)
T ss_pred HHHHHHHHHHHhhcC-----CCCCEEEECccccCHHHHHHHHHHhCC-cEEcCCCccHHHHHHHHhC
Confidence 666666666555433 44 799999999999999999999985 6777888989999999973
No 54
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.83 E-value=0.003 Score=68.20 Aligned_cols=74 Identities=23% Similarity=0.374 Sum_probs=52.0
Q ss_pred ecHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccC-CCCCcchhhhcccH
Q 002363 334 ITRQKFE-ELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELD-RHLDADEAIVLGAS 411 (930)
Q Consensus 334 ItR~efe-~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~-~~~n~deaVa~GAa 411 (930)
++|+++- .+|..+..|+.. .+++.++. ..|+|.||.++.|.+.+.+++.++. ++. .+.+|+.+.|+|||
T Consensus 213 ~~~edI~aGl~~sia~rv~~----~~~~~~i~----~~v~~~GGva~N~~l~~al~~~Lg~-~v~~~p~~p~~~GAlGAA 283 (293)
T TIGR03192 213 YTKNMVIAAYCQAMAERVVS----LLERIGVE----EGFFITGGIAKNPGVVKRIERILGI-KAVDTKIDSQIAGALGAA 283 (293)
T ss_pred CCHHHHHHHHHHHHHHHHHH----HhcccCCC----CCEEEECcccccHHHHHHHHHHhCC-CceeCCCCccHHHHHHHH
Confidence 3444432 344555555433 33333332 3589999999999999999999987 444 46789999999999
Q ss_pred HHHhh
Q 002363 412 LLAAN 416 (930)
Q Consensus 412 ~~aa~ 416 (930)
++|..
T Consensus 284 L~A~~ 288 (293)
T TIGR03192 284 LFGYT 288 (293)
T ss_pred HHHHH
Confidence 99864
No 55
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.64 E-value=0.0046 Score=69.46 Aligned_cols=45 Identities=31% Similarity=0.356 Sum_probs=41.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHh
Q 002363 370 AVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAA 415 (930)
Q Consensus 370 ~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa 415 (930)
.|+++||.++.+.|.+.+.+.+|. ++..+.+|+.+.|+|||++|.
T Consensus 358 ~VvftGGva~N~gvv~ale~~Lg~-~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 358 PVILVGGTSLIEGLVKALGDLLGI-EVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred cEEEECChhhhHHHHHHHHHHhCC-cEEECCcccHHHHHHHHHHhc
Confidence 499999999999999999999986 677788999999999999985
No 56
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=97.51 E-value=0.0031 Score=66.13 Aligned_cols=190 Identities=15% Similarity=0.149 Sum_probs=98.5
Q ss_pred HHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCCcc
Q 002363 185 ELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELG 264 (930)
Q Consensus 185 ~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lG 264 (930)
+..|.++.-.=-|+.+|.+...... ..+..+.++||||||||++++.- .+.+.-+-.+| .
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTP---Gt~~PlaIlDmG~GSTDAsii~~-------------~g~v~~iHlAG----A 165 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTP---GTDKPLAILDMGGGSTDASIINR-------------DGEVTAIHLAG----A 165 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTST---T--SSEEEEEE-SSEEEEEEE-T-------------TS-EEEEEEE-----S
T ss_pred HHHCCceEEccccHHHHHhcccCCC---CCCCCeEEEecCCCcccHHHhCC-------------CCcEEEEEecC----C
Confidence 4568888777779999988665544 23467999999999999999931 34433332222 2
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCCCcccEEE----------ee-----------
Q 002363 265 GQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISV----------ES----------- 323 (930)
Q Consensus 265 G~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~i~i----------e~----------- 323 (930)
|+-++..|...| +++- +.-||.+|+.=-+.-+..+.| +.
T Consensus 166 G~mVTmlI~sEL----------Gl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvv 225 (332)
T PF08841_consen 166 GNMVTMLINSEL----------GLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVV 225 (332)
T ss_dssp HHHHHHHHHHHC----------T-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEE
T ss_pred chhhHHHHHHhh----------CCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEE
Confidence 566666554322 1110 234566665321111100000 00
Q ss_pred -cccC--cccEEEecHHHHHHHHHHHHHH-HHHHHHHHHHHc--CCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCC---
Q 002363 324 -LYVD--IDFRSSITRQKFEELCEDLWER-SLVPLREVLNYS--GLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT--- 394 (930)
Q Consensus 324 -l~~~--~d~~~~ItR~efe~l~~~~~~~-i~~~i~~~L~~a--~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~--- 394 (930)
+.++ ..+...++-+++..+=...=++ +..-.-++|+.. .-+..+|+.|+|||||+.=.-|-++|.+.+..-
T Consensus 226 i~~~~~lvPi~~~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iV 305 (332)
T PF08841_consen 226 ILKEDGLVPIPGDLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIV 305 (332)
T ss_dssp EECTTEEEEESSTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-E
T ss_pred EecCCceeecCCCccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcce
Confidence 0011 1111122333333222221111 222334555543 233568999999999998887888888877543
Q ss_pred ----ccCCCCCcchhhhcccHHHH
Q 002363 395 ----ELDRHLDADEAIVLGASLLA 414 (930)
Q Consensus 395 ----~i~~~~n~deaVa~GAa~~a 414 (930)
.+.-..-|.-|||.|.++.-
T Consensus 306 aGRgNIrG~eGPRNAVATGLvlsy 329 (332)
T PF08841_consen 306 AGRGNIRGVEGPRNAVATGLVLSY 329 (332)
T ss_dssp EEE--GGGTSTTSTHHHHHHHHHH
T ss_pred eeccccccccCchHHHHHHHHHhh
Confidence 44455568889999998754
No 57
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=97.51 E-value=0.018 Score=61.43 Aligned_cols=45 Identities=27% Similarity=0.264 Sum_probs=38.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhCCCc----cCCCCCcchhhhcccHHHH
Q 002363 370 AVELIGGGTRVPKLQAKLQEYLGRTE----LDRHLDADEAIVLGASLLA 414 (930)
Q Consensus 370 ~ViLvGG~sriP~V~~~l~~~fg~~~----i~~~~n~deaVa~GAa~~a 414 (930)
.|+|.||.++.+.+.+.|++.++..+ +..+.+|+.+-|+|||++|
T Consensus 214 ~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 214 TVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred cEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 59999999999999999999996433 4456788899999999875
No 58
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.47 E-value=0.0025 Score=72.40 Aligned_cols=89 Identities=21% Similarity=0.163 Sum_probs=51.9
Q ss_pred cEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEEe---chhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecc
Q 002363 163 DFVISVPPYFGQAERKGLMQAAELAGMNVLSLV---NEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYN 239 (930)
Q Consensus 163 ~~VItVPa~f~~~qR~al~~Aa~~AGl~~l~Li---~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~ 239 (930)
-++||==+--.++.|..+..-+..||==|+.-- -|+.=|+-.-|-..-.......|+=+|+||||+.+++++
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~----- 161 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFD----- 161 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEE-----
Confidence 356676666677778888777787773222110 122222211111110112357899999999999999995
Q ss_pred cccccceeccceEEEEEecCCCCcchHHH
Q 002363 240 AKVYGKTVSVNQFQVKDVRWDAELGGQNM 268 (930)
Q Consensus 240 ~~~~g~~~~~~~~~vl~~~~d~~lGG~~~ 268 (930)
.|. +++++. -++|||.|
T Consensus 162 ---------~G~--v~~T~c-l~IGGRLi 178 (473)
T PF06277_consen 162 ---------NGE--VIDTAC-LDIGGRLI 178 (473)
T ss_pred ---------CCE--EEEEEE-EeeccEEE
Confidence 343 444433 37899866
No 59
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.41 E-value=0.018 Score=63.27 Aligned_cols=72 Identities=24% Similarity=0.255 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhh
Q 002363 340 EELCEDLWERSLVPLRE-VLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAAN 416 (930)
Q Consensus 340 e~l~~~~~~~i~~~i~~-~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ 416 (930)
|+++.-+...+..-+-. +++.-.+. +. |+|+||.+....|.+++.+.+|. ++..+.+|...-|.|||++|..
T Consensus 318 EdI~AGl~~Sv~~~v~~~~~~~~~i~--~~--iv~~GGva~n~av~~ale~~lg~-~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 318 EDILAGLAYSVAENVAEKVIKRVDIE--EP--IVLQGGVALNKAVVRALEDLLGR-KVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC--CC--EEEECcchhhHHHHHHHHHHhCC-eeecCCccchhhHHHHHHHHhh
Confidence 55565555555443333 55544333 22 99999999999999999999995 7889999999999999999874
No 60
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.08 E-value=0.067 Score=62.09 Aligned_cols=87 Identities=17% Similarity=0.087 Sum_probs=53.3
Q ss_pred cEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCC---------------
Q 002363 330 FRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT--------------- 394 (930)
Q Consensus 330 ~~~~ItR~efe~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~--------------- 394 (930)
+-+.|.-.++++.+-.---.|...++.+.+..+. -+.|-++|+|--+|+|.||..++...+..
T Consensus 743 ~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~--y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~W 820 (1014)
T COG4457 743 VPLAIDLSQLHECFLSGDYDITGVFDALCEAINH--YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGTW 820 (1014)
T ss_pred cceeccHHHHHHHHhhCcccccchHHHHHHHHhh--hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceeccce
Confidence 3446666666654432200133333333222222 25567999999999999999998765431
Q ss_pred ----ccCCCCCcchhhhcccHHHHhhhc
Q 002363 395 ----ELDRHLDADEAIVLGASLLAANLS 418 (930)
Q Consensus 395 ----~i~~~~n~deaVa~GAa~~aa~ls 418 (930)
+..+--||...+|.||.+.+..+.
T Consensus 821 YPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 821 YPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred ecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 123334889999999988876544
No 61
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=96.76 E-value=0.015 Score=65.57 Aligned_cols=121 Identities=17% Similarity=0.196 Sum_probs=83.2
Q ss_pred eecHHHHHHHHHHHHHHHHHHhccCcc-----ccEEEeeCCCCCHHHHHHHHHH-HHHcCCCeeEEechhhHHHHHhccc
Q 002363 135 NFSVEELLAMVLSYAVNLVDTHAKLAV-----KDFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGID 208 (930)
Q Consensus 135 ~~~~eel~a~~L~~lk~~a~~~~~~~~-----~~~VItVPa~f~~~qR~al~~A-a~~AGl~~l~Li~EptAAAl~y~~~ 208 (930)
.++..++++.+-+-+.-.....++.++ -.+|+-||-.|....-+-++.. ....||+-..++-|+.||.+.-|+.
T Consensus 196 y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGls 275 (618)
T KOG0797|consen 196 YYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLS 275 (618)
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCcc
Confidence 456666666554433333344455543 3689999999998775555554 5678999999999999998766553
Q ss_pred cCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCCcchHHHHHHHHHHHHH
Q 002363 209 KDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFAD 278 (930)
Q Consensus 209 ~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~~ 278 (930)
.--|||+|+-+|.|+.|+= |....+..+ -...||.||++.|+-++.+
T Consensus 276 --------s~CVVdiGAQkTsIaCVEd--------Gvs~~ntri-------~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 276 --------SACVVDIGAQKTSIACVED--------GVSLPNTRI-------ILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred --------ceeEEEccCcceeEEEeec--------CccccCceE-------EeccCCchHHHHHHHHHHh
Confidence 4678999999999999951 111111211 1367999999999877765
No 62
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=96.15 E-value=0.5 Score=54.09 Aligned_cols=60 Identities=18% Similarity=0.157 Sum_probs=40.8
Q ss_pred cccEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHH
Q 002363 328 IDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQ 388 (930)
Q Consensus 328 ~d~~~~ItR~efe~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~ 388 (930)
..-.+.||..++.++.. --.-+..-++-.|+++|++.+||+.|+|.||+++-=-+.+.+.
T Consensus 289 ~~~~i~itq~DIr~~ql-AKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 289 IGDDIYITQKDIREFQL-AKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp SSS-EEEEHHHHHHHHH-HHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCCCEEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 34457999999987532 2233556677888999999999999999999998777777764
No 63
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.03 E-value=0.12 Score=57.69 Aligned_cols=46 Identities=20% Similarity=0.220 Sum_probs=40.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhC----CCccCCCCCcchhhhcccHHHH
Q 002363 369 YAVELIGGGTRVPKLQAKLQEYLG----RTELDRHLDADEAIVLGASLLA 414 (930)
Q Consensus 369 ~~ViLvGG~sriP~V~~~l~~~fg----~~~i~~~~n~deaVa~GAa~~a 414 (930)
..|+|+||.++.+.+.+.|++.++ ..++..+.+|+.+.|+|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 469999999999999999999995 3357778899999999999975
No 64
>PRK13317 pantothenate kinase; Provisional
Probab=95.88 E-value=0.15 Score=55.51 Aligned_cols=49 Identities=27% Similarity=0.221 Sum_probs=41.9
Q ss_pred CccEEEEEc-CCCCcHHHHHHHHHHhC--CCccCCCCCcchhhhcccHHHHh
Q 002363 367 EIYAVELIG-GGTRVPKLQAKLQEYLG--RTELDRHLDADEAIVLGASLLAA 415 (930)
Q Consensus 367 ~I~~ViLvG-G~sriP~V~~~l~~~fg--~~~i~~~~n~deaVa~GAa~~aa 415 (930)
.+..|+++| |.++.|.+++.+.+++. ..++..+.+|.-+.|+|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 456899999 79999999999999884 33677788999999999999876
No 65
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=95.83 E-value=0.011 Score=61.07 Aligned_cols=48 Identities=40% Similarity=0.585 Sum_probs=41.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhh
Q 002363 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAAN 416 (930)
Q Consensus 367 ~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ 416 (930)
.++.|+++||.++.|.+.+++.+.||. ++... +..++.|+|||+.|+.
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl~~-~V~~~-~~~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVLGR-PVVRP-EVEEASALGAALLAAV 196 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHHTS-EEEEE-SSSTHHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHhCC-ceEeC-CCCchHHHHHHHHHHh
Confidence 488999999999999999999999995 55444 3489999999999874
No 66
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=95.43 E-value=0.44 Score=49.60 Aligned_cols=193 Identities=18% Similarity=0.178 Sum_probs=112.8
Q ss_pred ccEEEeeCCCCCHHHHHHHHHH-HHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeeccc
Q 002363 162 KDFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNA 240 (930)
Q Consensus 162 ~~~VItVPa~f~~~qR~al~~A-a~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~ 240 (930)
..+.+|-|+-=....|+.|.+. .+..||.-+-+. -.|+.--|+... -.=+|+|-|.|-|-+.-|.=
T Consensus 102 ~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyva--iQAVLtLYAQGL------~tGvVvDSGDGVTHi~PVye----- 168 (389)
T KOG0677|consen 102 CKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVA--IQAVLTLYAQGL------LTGVVVDSGDGVTHIVPVYE----- 168 (389)
T ss_pred CeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEeh--HHHHHHHHHhcc------cceEEEecCCCeeEEeeeec-----
Confidence 3578899998877888877766 677788754332 233333355432 34589999999888776621
Q ss_pred ccccceeccceEEEEEecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHhhhhcCC------
Q 002363 241 KVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSAN------ 314 (930)
Q Consensus 241 ~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~------ 314 (930)
.-.+..+ .....+.|+++++-|.+++..+= |.++-..+ .......|+.|.--
T Consensus 169 --------~~~l~HL--trRldvAGRdiTryLi~LLl~rG-----YafN~tAD-------FETVR~iKEKLCYisYd~e~ 226 (389)
T KOG0677|consen 169 --------GFVLPHL--TRRLDVAGRDITRYLIKLLLRRG-----YAFNHTAD-------FETVREIKEKLCYISYDLEL 226 (389)
T ss_pred --------ceehhhh--hhhccccchhHHHHHHHHHHhhc-----cccccccc-------hHHHHHHHhhheeEeechhh
Confidence 1111111 22236789999999998887652 32222222 11222334333210
Q ss_pred -----CcccEEEee--cccCcccEEEecHHHHH---HHHHHHHH-----HHHHHHHHHHHHcCCCc--CCccEEEEEcCC
Q 002363 315 -----TMAPISVES--LYVDIDFRSSITRQKFE---ELCEDLWE-----RSLVPLREVLNYSGLKM--DEIYAVELIGGG 377 (930)
Q Consensus 315 -----~~~~i~ie~--l~~~~d~~~~ItR~efe---~l~~~~~~-----~i~~~i~~~L~~a~~~~--~~I~~ViLvGG~ 377 (930)
-++++-+++ |.+|. .+++--+.|| .+++|.+- .+.+++-.+++.+.+.. .--.+|+|.||+
T Consensus 227 e~kLalETTvLv~~YtLPDGR--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGs 304 (389)
T KOG0677|consen 227 EQKLALETTVLVESYTLPDGR--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGS 304 (389)
T ss_pred hhHhhhhheeeeeeeecCCCc--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCc
Confidence 122333332 33443 3456666665 46666322 35667777777765542 224789999999
Q ss_pred CCcHHHHHHHHHHh
Q 002363 378 TRVPKLQAKLQEYL 391 (930)
Q Consensus 378 sriP~V~~~l~~~f 391 (930)
+.-|.+-..|.+.+
T Consensus 305 tMYPGLPSRLEkEl 318 (389)
T KOG0677|consen 305 TMYPGLPSRLEKEL 318 (389)
T ss_pred ccCCCCcHHHHHHH
Confidence 99998888776544
No 67
>PRK15027 xylulokinase; Provisional
Probab=94.85 E-value=0.057 Score=64.01 Aligned_cols=83 Identities=24% Similarity=0.294 Sum_probs=57.9
Q ss_pred ecHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHH
Q 002363 334 ITRQKFEELC-EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASL 412 (930)
Q Consensus 334 ItR~efe~l~-~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~ 412 (930)
-+|.+|-..+ +-+.-.+...+ +.|+..+. .++.|+++||+++.+...+++.+.||. ++....+.+++.++|||+
T Consensus 356 ~~~~~l~rAvlEgia~~~~~~~-~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~-pv~~~~~~~~~~a~GaA~ 430 (484)
T PRK15027 356 HGPNELARAVLEGVGYALADGM-DVVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQ-QLDYRTGGDVGPALGAAR 430 (484)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhCC-eEEeecCCCcchHHHHHH
Confidence 3566665433 33333333333 34454454 478899999999999999999999996 664555667789999999
Q ss_pred HHhhhcCCc
Q 002363 413 LAANLSDGI 421 (930)
Q Consensus 413 ~aa~ls~~~ 421 (930)
.|+.-.+.+
T Consensus 431 lA~~~~G~~ 439 (484)
T PRK15027 431 LAQIAANPE 439 (484)
T ss_pred HHHHhcCCc
Confidence 999755544
No 68
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=94.74 E-value=0.094 Score=57.63 Aligned_cols=68 Identities=24% Similarity=0.231 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHH
Q 002363 342 LCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASL 412 (930)
Q Consensus 342 l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~ 412 (930)
+++-...++.+.|+......+..+.+. .++.+||++ |++-..|.+.+|-..+..+..+.-+-|.||++
T Consensus 216 i~~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 216 IVRIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--EEEE--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--cccccccccccccccccccccccccccccccc
Confidence 334455555555665544456655443 345556665 77888888888877777676678888999985
No 69
>PLN02669 xylulokinase
Probab=94.62 E-value=0.079 Score=63.76 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=41.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhh
Q 002363 366 DEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAAN 416 (930)
Q Consensus 366 ~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ 416 (930)
..++.|+++||+++.+.+.+++.++||. +|.+. +..++.++|||+.|+.
T Consensus 444 ~~~~~i~~~GGgs~s~~w~Qi~ADVlg~-pV~~~-~~~ea~alGAA~~A~~ 492 (556)
T PLN02669 444 VPPKRIIATGGASANQSILKLIASIFGC-DVYTV-QRPDSASLGAALRAAH 492 (556)
T ss_pred CCCcEEEEEcChhcCHHHHHHHHHHcCC-CeEec-CCCCchHHHHHHHHHH
Confidence 3578999999999999999999999996 55443 4457899999999986
No 70
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=94.60 E-value=0.083 Score=63.52 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=61.2
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcc
Q 002363 333 SITRQKFEELCEDLWERSLVPLREVLN---YSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLG 409 (930)
Q Consensus 333 ~ItR~efe~l~~~~~~~i~~~i~~~L~---~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~G 409 (930)
.=+|..+..++.-+++.+.=.+..+++ +.+. .++.|.++||+++.+...+++.+++|. +|... +..|+.++|
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~-pV~~~-~~~e~~alG 483 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGH---TIKSIFMSGGQCQNPLLMQLIADACDM-PVLIP-YVNEAVLHG 483 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEecCcccCHHHHHHHHHHHCC-eeEec-ChhHHHHHH
Confidence 335767777777777766544444444 3343 478899999999999999999999996 66544 445688999
Q ss_pred cHHHHhhhcCC
Q 002363 410 ASLLAANLSDG 420 (930)
Q Consensus 410 Aa~~aa~ls~~ 420 (930)
||+.|+.-.+.
T Consensus 484 aA~lA~~~~G~ 494 (541)
T TIGR01315 484 AAMLGAKAAGT 494 (541)
T ss_pred HHHHHHHhcCc
Confidence 99999865543
No 71
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=94.39 E-value=0.12 Score=48.72 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=28.4
Q ss_pred EEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCCcc--hHHHH--HHHHHHHH
Q 002363 218 VVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELG--GQNME--LRLVEYFA 277 (930)
Q Consensus 218 vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lG--G~~~D--~~L~~~l~ 277 (930)
|+++|+|++++.+.+++.. ..+.+.+++.+.-+..| |..|. ..+.+-|.
T Consensus 1 i~~iDiGs~~~~~~i~~~~-----------~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~ 53 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDG-----------SDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIK 53 (120)
T ss_dssp EEEEEE-SSSEEEEEEETT-----------EEEEEEEES----------HHHHH--HHHHHHHT
T ss_pred CEEEEcCCCcEEEEEEEeC-----------CCCcEEEEEEecccccccCCCEEEEHHHHHHHHH
Confidence 6899999999999999642 24557777665444444 66666 55554443
No 72
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=94.20 E-value=0.88 Score=52.76 Aligned_cols=66 Identities=24% Similarity=0.295 Sum_probs=53.1
Q ss_pred HHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhhcCCc
Q 002363 351 LVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (930)
Q Consensus 351 ~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls~~~ 421 (930)
.+.|-+++++.|+ .|+.|+..||..+.|.+.+.+....|. ++.. ...++++++|+|+.|+.-.+.+
T Consensus 418 tR~Iie~~~~~g~---~Id~l~~sGG~~KN~llmql~aDvtg~-~v~i-~~s~~a~llGsAm~~avAag~~ 483 (544)
T COG1069 418 TRAIIETFEDQGI---AIDTLFASGGIRKNPLLMQLYADVTGR-PVVI-PASDQAVLLGAAMFAAVAAGVH 483 (544)
T ss_pred HHHHHHHHHHcCC---eeeEEEecCCcccCHHHHHHHHHhcCC-eEEe-ecccchhhhHHHHHHHHHhccC
Confidence 3556677777777 588999999999999999999999997 4333 3678899999999998766543
No 73
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=94.17 E-value=0.44 Score=55.48 Aligned_cols=74 Identities=24% Similarity=0.294 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhhcCCc
Q 002363 343 CEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (930)
Q Consensus 343 ~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls~~~ 421 (930)
++-+.-++...|+..-++.+ ..|+.+.+.||.|+.|.+.+.+.+.+|. ++.++.+.|- +++|||+.|+..++.+
T Consensus 393 leai~fqtr~Il~am~~~~~---~~i~~L~~~GG~s~N~ll~Q~~ADi~g~-pv~~p~~~e~-~~~GaA~l~~~a~~~~ 466 (516)
T KOG2517|consen 393 LEAIAFQTREILEAMERDGG---HPISTLRVCGGLSKNPLLMQLQADILGL-PVVRPQDVEA-VALGAAMLAGAASGKW 466 (516)
T ss_pred HHHHHHHHHHHHHHHHHhcC---CCcceeeeccccccCHHHHHHHHHHhCC-ccccccchhH-HHHHHHHHHHhhcCCc
Confidence 34444455555555544444 4677899999999999999999999995 7778878776 9999999999888754
No 74
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=93.60 E-value=0.17 Score=59.89 Aligned_cols=53 Identities=32% Similarity=0.526 Sum_probs=44.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhhcCCc
Q 002363 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (930)
Q Consensus 367 ~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls~~~ 421 (930)
.++.|.++||+++.+.+.+++.+.||. ++... ...|+.++|||+.|+.-.+.+
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~g~-pv~~~-~~~e~~a~GaA~~a~~~~g~~ 442 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIFGT-PVDVP-EGEEGPALGAAILAAWALGEK 442 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHhCC-ceeec-CCCcchHHHHHHHHHHhcCCC
Confidence 478999999999999999999999986 55443 466799999999999765543
No 75
>PRK10854 exopolyphosphatase; Provisional
Probab=93.50 E-value=1.4 Score=52.65 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=38.0
Q ss_pred HHHHHHHHcCCCeeEEechhhHHHHHh-ccccCCCCCCcEEEEEEcCCCceEEEEEE
Q 002363 179 GLMQAAELAGMNVLSLVNEHSGAALQY-GIDKDFSNESRHVVFYDMGATTTYAALVY 234 (930)
Q Consensus 179 al~~Aa~~AGl~~l~Li~EptAAAl~y-~~~~~~~~~~~~vlv~D~GggT~dvsvv~ 234 (930)
.+..+-+..|+++ .+|+...=|.+.| |....+.. ....+|+|+|||+|.+++++
T Consensus 101 fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~-~~~~lvvDIGGGStEl~~~~ 155 (513)
T PRK10854 101 FLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPE-KGRKLVIDIGGGSTELVIGE 155 (513)
T ss_pred HHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCC-CCCeEEEEeCCCeEEEEEec
Confidence 3444455569997 7888777666665 44433332 35689999999999999983
No 76
>PRK00047 glpK glycerol kinase; Provisional
Probab=93.26 E-value=0.18 Score=59.97 Aligned_cols=53 Identities=21% Similarity=0.179 Sum_probs=43.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhhcCCc
Q 002363 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (930)
Q Consensus 367 ~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls~~~ 421 (930)
.++.|.++||+++.|...+++.+.||. +|. .....|+.++|||+.|+.-.+.+
T Consensus 403 ~~~~i~~~GGga~s~~w~Qi~ADvlg~-pV~-~~~~~e~~a~GaA~~A~~~~G~~ 455 (498)
T PRK00047 403 RLKELRVDGGAVANNFLMQFQADILGV-PVE-RPVVAETTALGAAYLAGLAVGFW 455 (498)
T ss_pred CCceEEEecCcccCHHHHHHHHHhhCC-eeE-ecCcccchHHHHHHHHhhhcCcC
Confidence 377899999999999999999999996 554 34556799999999998755433
No 77
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=93.10 E-value=0.17 Score=60.15 Aligned_cols=81 Identities=22% Similarity=0.198 Sum_probs=54.6
Q ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHH-cCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHH
Q 002363 335 TRQKFEELC-EDLWERSLVPLREVLNY-SGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASL 412 (930)
Q Consensus 335 tR~efe~l~-~~~~~~i~~~i~~~L~~-a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~ 412 (930)
+|.+|-..+ +-+.-.+...++ .|+. .+. .++.|.++||++|.+...+++.+.||. ++.. .+..|+.++|||+
T Consensus 369 ~~~~l~rAvlEgia~~~~~~~~-~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADv~g~-pv~~-~~~~e~~alGaA~ 442 (493)
T TIGR01311 369 TKAHIARAALEAIAFQTRDVLE-AMEKDAGV---EITKLRVDGGMTNNNLLMQFQADILGV-PVVR-PKVTETTALGAAY 442 (493)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHhcCC---CCceEEEecccccCHHHHHHHHHhcCC-eeEe-cCCCcchHHHHHH
Confidence 455554332 333333444443 3332 243 478899999999999999999999996 5543 4556789999999
Q ss_pred HHhhhcCCc
Q 002363 413 LAANLSDGI 421 (930)
Q Consensus 413 ~aa~ls~~~ 421 (930)
.|+.-.+.+
T Consensus 443 ~a~~~~G~~ 451 (493)
T TIGR01311 443 AAGLAVGYW 451 (493)
T ss_pred HHHhhcCcC
Confidence 998655433
No 78
>PRK04123 ribulokinase; Provisional
Probab=93.01 E-value=0.19 Score=60.55 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=42.8
Q ss_pred CccEEEEEcCC-CCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhhcCC
Q 002363 367 EIYAVELIGGG-TRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDG 420 (930)
Q Consensus 367 ~I~~ViLvGG~-sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls~~ 420 (930)
.++.|.++||+ ++.+.+.+++.+.||. +|.. ....|+.++|||+.|+.-.+.
T Consensus 438 ~~~~i~~~GGg~s~s~~w~Qi~ADv~g~-pV~~-~~~~e~~alGaA~lA~~~~G~ 490 (548)
T PRK04123 438 PVEEVIAAGGIARKNPVLMQIYADVLNR-PIQV-VASDQCPALGAAIFAAVAAGA 490 (548)
T ss_pred CcceEEEeCCCcccCHHHHHHHHHhcCC-ceEe-cCccccchHHHHHHHHHHhcc
Confidence 47889999999 9999999999999996 5533 345678999999999875443
No 79
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=92.93 E-value=0.51 Score=50.90 Aligned_cols=67 Identities=22% Similarity=0.198 Sum_probs=38.5
Q ss_pred cEEEeeCCCCCHHHHHHHHHHHHHcCCCee--------EEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEE
Q 002363 163 DFVISVPPYFGQAERKGLMQAAELAGMNVL--------SLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVY 234 (930)
Q Consensus 163 ~~VItVPa~f~~~qR~al~~Aa~~AGl~~l--------~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~ 234 (930)
-++||=-.--....|.++..-...||==++ .+|--.-|-|..|.- +...+|+=+|+||||+..|++.
T Consensus 89 AvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Se-----qr~t~v~NlDIGGGTtN~slFD 163 (473)
T COG4819 89 AVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSE-----QRLTRVLNLDIGGGTTNYSLFD 163 (473)
T ss_pred cEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhh-----hhceEEEEEeccCCccceeeec
Confidence 355665555556666666555555552222 222222222322221 2346799999999999999983
No 80
>PLN02295 glycerol kinase
Probab=92.92 E-value=0.31 Score=58.23 Aligned_cols=53 Identities=21% Similarity=0.184 Sum_probs=43.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhhcCCc
Q 002363 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (930)
Q Consensus 367 ~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls~~~ 421 (930)
.++.|.++||+++.|...+++.+.||. +|. ..+..|+.++|||+.|+.-.+.+
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~g~-pV~-~~~~~e~~alGaA~~A~~~~G~~ 464 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLLGS-PVV-RPADIETTALGAAYAAGLAVGLW 464 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhcCC-ceE-ecCccccHHHHHHHHHHhhcCcC
Confidence 578899999999999999999999996 554 34556799999999998655543
No 81
>PRK09698 D-allose kinase; Provisional
Probab=92.91 E-value=13 Score=41.09 Aligned_cols=43 Identities=12% Similarity=-0.081 Sum_probs=28.8
Q ss_pred cCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEE
Q 002363 187 AGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALV 233 (930)
Q Consensus 187 AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv 233 (930)
.|+++ .+.|+..|+|++-..... ....+++++.+|.| .-.+++
T Consensus 104 ~~~pv-~v~NDa~aaa~~E~~~~~--~~~~~~~~v~lgtG-IG~giv 146 (302)
T PRK09698 104 LNCPV-FFSRDVNLQLLWDVKENN--LTQQLVLGAYLGTG-MGFAVW 146 (302)
T ss_pred hCCCE-EEcchHhHHHHHHHHhcC--CCCceEEEEEecCc-eEEEEE
Confidence 47765 799999999886433221 22358899999876 444555
No 82
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=92.83 E-value=0.23 Score=59.64 Aligned_cols=82 Identities=18% Similarity=0.143 Sum_probs=55.1
Q ss_pred ecHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCcCCccEEEEEcCC-CCcHHHHHHHHHHhCCCccCCCCCcchhhhcccH
Q 002363 334 ITRQKFEELCED-LWERSLVPLREVLNYSGLKMDEIYAVELIGGG-TRVPKLQAKLQEYLGRTELDRHLDADEAIVLGAS 411 (930)
Q Consensus 334 ItR~efe~l~~~-~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~-sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa 411 (930)
-+|.+|-..+-+ +.-.+... -+.|+..+. .++.|.++||+ ++.+.+.+++.+.||. +|...-+ .|+.++|||
T Consensus 405 ~~~~~~~RAvlEgia~~~~~~-l~~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~g~-pV~~~~~-~e~~a~GaA 478 (536)
T TIGR01234 405 TDAPLLYRALIEATAFGTRMI-METFTDSGV---PVEELMAAGGIARKNPVIMQIYADVTNR-PLQIVAS-DQAPALGAA 478 (536)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CcceEEEeCCccccCHHHHHHHHHhhCC-eeEeccC-CcchhHHHH
Confidence 355654433322 22233333 333444454 47889999999 9999999999999995 6654444 468899999
Q ss_pred HHHhhhcCCc
Q 002363 412 LLAANLSDGI 421 (930)
Q Consensus 412 ~~aa~ls~~~ 421 (930)
+.|+.-.+.+
T Consensus 479 ~lA~~~~G~~ 488 (536)
T TIGR01234 479 IFAAVAAGVY 488 (536)
T ss_pred HHHHHHcCCc
Confidence 9998755533
No 83
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=92.78 E-value=0.23 Score=59.19 Aligned_cols=53 Identities=26% Similarity=0.297 Sum_probs=43.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhhcCCc
Q 002363 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (930)
Q Consensus 367 ~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls~~~ 421 (930)
.++.|.++||+++.+.+.+++.+.||. ++.. ....|+.++|||+.|+.-.+.+
T Consensus 406 ~~~~i~~~GG~a~s~~w~Qi~Adv~g~-pV~~-~~~~e~~alGaAl~aa~a~G~~ 458 (504)
T PTZ00294 406 ELNSLRVDGGLTKNKLLMQFQADILGK-DIVV-PEMAETTALGAALLAGLAVGVW 458 (504)
T ss_pred CcceEEEecccccCHHHHHHHHHHhCC-ceEe-cCcccchHHHHHHHHHhhcCcc
Confidence 378899999999999999999999996 5543 3456789999999998655443
No 84
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=92.73 E-value=1.7 Score=50.11 Aligned_cols=125 Identities=12% Similarity=0.062 Sum_probs=70.1
Q ss_pred ecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHHHH-HHHcCCCeeEEechhhHHHHHhccccCCCCC
Q 002363 136 FSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGIDKDFSNE 214 (930)
Q Consensus 136 ~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~A-a~~AGl~~l~Li~EptAAAl~y~~~~~~~~~ 214 (930)
++-=++...+|.|+....-.....-..-+++|=+..=...+|+.|.+- .+..|++-+.+=-+.-=+. |.... ...
T Consensus 91 vtNwel~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~--~hN~~--~~~ 166 (645)
T KOG0681|consen 91 VTNWELMEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSF--YHNYG--KSS 166 (645)
T ss_pred cccHHHHHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHH--hhccC--ccc
Confidence 444456666666665543221111234577777776666788888776 4556887543321111111 11111 122
Q ss_pred CcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCCcchHHHHHHHHHHHHHH
Q 002363 215 SRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADE 279 (930)
Q Consensus 215 ~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~~~ 279 (930)
....||++||..+|-|-.|- .|... +....-.++||...-.-|.++|..+
T Consensus 167 ~~~~liis~g~~~T~vipvl--------------dG~~i-l~~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 167 NKSGLIISMGHSATHVIPVL--------------DGRLI-LKDVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred CcceEEEecCCCcceeEEEe--------------cCchh-hhcceeeccCcchHHHHHHHHHhcc
Confidence 34689999999999887762 33322 2233345899998876666666554
No 85
>PRK03011 butyrate kinase; Provisional
Probab=92.69 E-value=1.9 Score=48.81 Aligned_cols=47 Identities=23% Similarity=0.252 Sum_probs=36.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhC---CCccCCCCCcchhhhcccHHH
Q 002363 367 EIYAVELIGGGTRVPKLQAKLQEYLG---RTELDRHLDADEAIVLGASLL 413 (930)
Q Consensus 367 ~I~~ViLvGG~sriP~V~~~l~~~fg---~~~i~~~~n~deaVa~GAa~~ 413 (930)
+++.|+|.||.+..+.+.+.|++.+. .-.+....+..+|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 68899999999999999998887654 234555556678999998743
No 86
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=92.66 E-value=0.34 Score=57.17 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=42.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhhcCC
Q 002363 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDG 420 (930)
Q Consensus 367 ~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls~~ 420 (930)
.++.|.++||+++.|...+++.+.||. +|... +..|+.++|||+.|+.-.+.
T Consensus 393 ~~~~i~~~GGga~s~~w~Qi~Adv~g~-pV~~~-~~~e~~~lGaA~~a~~a~G~ 444 (465)
T TIGR02628 393 KASELLLVGGGSKNTLWNQIRANMLDI-PVKVV-DDAETTVAGAAMFGFYGVGE 444 (465)
T ss_pred CcceEEEecCccCCHHHHHHhhhhcCC-eeEec-cCCcchHHHHHHHHHHhcCc
Confidence 467899999999999999999999995 66444 44578899999999865443
No 87
>PRK10331 L-fuculokinase; Provisional
Probab=92.57 E-value=0.24 Score=58.49 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=43.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhhcCCc
Q 002363 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (930)
Q Consensus 367 ~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls~~~ 421 (930)
.++.|.++||+++.|...+++.+.||. ++... ...|+.++|||+.|+.-.+.+
T Consensus 389 ~~~~i~~~GGga~s~~w~Qi~Advlg~-pV~~~-~~~e~~a~GaA~la~~~~G~~ 441 (470)
T PRK10331 389 KASELLLVGGGSRNALWNQIKANMLDI-PIKVL-DDAETTVAGAAMFGWYGVGEF 441 (470)
T ss_pred CCceEEEEcccccCHHHHHHHHHhcCC-eeEec-CcccchHHHHHHHHHHhcCCC
Confidence 478899999999999999999999996 55433 455789999999998755433
No 88
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=92.07 E-value=0.3 Score=57.45 Aligned_cols=52 Identities=23% Similarity=0.225 Sum_probs=42.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhhcCCc
Q 002363 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (930)
Q Consensus 367 ~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls~~~ 421 (930)
.++.|.++||+++.+...+++.+.+|. +|... . .|+.++|||+.|+.-.+.+
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvlg~-pV~~~-~-~e~~a~GaA~~a~~~~G~~ 438 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADACGI-RVIAG-P-VEASTLGNIGVQLMALDEI 438 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHhCC-ceEcC-C-chHHHHHHHHHHHHhcCCc
Confidence 477899999999999999999999996 56433 3 6799999999998755544
No 89
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=92.05 E-value=0.42 Score=57.05 Aligned_cols=82 Identities=13% Similarity=0.150 Sum_probs=54.5
Q ss_pred cHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHH
Q 002363 335 TRQKFEEL-CEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLL 413 (930)
Q Consensus 335 tR~efe~l-~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~ 413 (930)
+|.+|-.. ++-+.-.+...+....+..+. .++.|.++||+++.+...+++.+.||. ++... +..|+.++|||+.
T Consensus 371 ~~~~l~rAvlEgia~~~~~~~~~~~~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~-pv~~~-~~~e~~a~GaA~l 445 (505)
T TIGR01314 371 KKEHMIRAALEGVIYNLYTVALALVEVMGD---PLNMIQATGGFASSEVWRQMMSDIFEQ-EIVVP-ESYESSCLGACIL 445 (505)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecCcccCHHHHHHHHHHcCC-eeEec-CCCCcchHHHHHH
Confidence 44444332 233333334444443333443 578999999999999999999999996 55444 3456899999999
Q ss_pred HhhhcCCc
Q 002363 414 AANLSDGI 421 (930)
Q Consensus 414 aa~ls~~~ 421 (930)
|+.-.+.+
T Consensus 446 a~~~~G~~ 453 (505)
T TIGR01314 446 GLKALGLI 453 (505)
T ss_pred HHHhcCcc
Confidence 98755543
No 90
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=91.62 E-value=0.59 Score=55.21 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=42.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhhcCCc
Q 002363 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (930)
Q Consensus 367 ~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls~~~ 421 (930)
.++.|.++||++|.+...+++.+++|. +|... . .|+.++|||+.|+.-.+.+
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvlg~-pV~~~-~-~ea~alGaa~~a~~a~G~~ 426 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADACGI-RVIAG-P-VEASTLGNIGIQLMTLDEL 426 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHhCC-CeeeC-C-hhHHHHHHHHHHHHHcCCc
Confidence 467899999999999999999999996 66433 3 3799999999988755543
No 91
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=91.55 E-value=2.1 Score=46.41 Aligned_cols=47 Identities=17% Similarity=-0.022 Sum_probs=38.1
Q ss_pred CCccEEEEEcC-CCCcHHHHHHHHHHhCC--CccCCCCCcchhhhcccHH
Q 002363 366 DEIYAVELIGG-GTRVPKLQAKLQEYLGR--TELDRHLDADEAIVLGASL 412 (930)
Q Consensus 366 ~~I~~ViLvGG-~sriP~V~~~l~~~fg~--~~i~~~~n~deaVa~GAa~ 412 (930)
..+..|+++|| .+..|.+++.+...+.- .++..+-|..-.+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 46788999999 67899999999877642 3556777888999999986
No 92
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=91.48 E-value=0.44 Score=53.66 Aligned_cols=54 Identities=19% Similarity=0.326 Sum_probs=45.6
Q ss_pred cCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhh
Q 002363 361 SGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAAN 416 (930)
Q Consensus 361 a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ 416 (930)
-|.....-..|+.+||+||.-.|-+.|.++||. ++. .+...+++++|+||.|+.
T Consensus 436 lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~a-pVy-~~~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 436 LGFKSNPPTRILVTGGASRNEAILQIIADVFGA-PVY-TIEGPNSAALGGAYRAAY 489 (545)
T ss_pred ccCCCCCCceEEEecCccccHHHHHHHHHHhCC-CeE-eecCCchhhHHHHHHHHH
Confidence 456666778999999999999999999999996 443 337888999999999874
No 93
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=91.25 E-value=0.58 Score=56.02 Aligned_cols=52 Identities=19% Similarity=0.200 Sum_probs=42.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhhcCC
Q 002363 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDG 420 (930)
Q Consensus 367 ~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls~~ 420 (930)
.++.|.++||+++.+...+++.+.||. ++.... ..|+.++|||+.|+.-.+.
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvlg~-pV~~~~-~~e~~alGaA~lA~~~~G~ 460 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVTGL-PVKVPV-VKEATALGCAIAAGVGAGI 460 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhcCC-eeEEec-ccCchHHHHHHHHHHHhCC
Confidence 478899999999999999999999996 554443 4468899999999865543
No 94
>PRK09557 fructokinase; Reviewed
Probab=91.05 E-value=2.5 Score=46.70 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=28.6
Q ss_pred cCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEE
Q 002363 187 AGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALV 233 (930)
Q Consensus 187 AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv 233 (930)
.|+++ .+.|+..|+|++-..... ....++++++.+|.| +-.+++
T Consensus 96 ~~~pv-~~~NDa~aaA~aE~~~g~-~~~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 96 LNREV-RLANDANCLAVSEAVDGA-AAGKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred HCCCE-EEccchhHHHHHHHHhcc-cCCCCcEEEEEEccc-eEEEEE
Confidence 47865 699999999987533221 123467888888855 445554
No 95
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=90.35 E-value=18 Score=40.17 Aligned_cols=95 Identities=15% Similarity=0.194 Sum_probs=55.9
Q ss_pred ecHHHHHHHHHHHHHHHHHHh--ccCccccEEEeeCCCCCHHH------------HHHHHHHH-HHcCCCeeEEechhhH
Q 002363 136 FSVEELLAMVLSYAVNLVDTH--AKLAVKDFVISVPPYFGQAE------------RKGLMQAA-ELAGMNVLSLVNEHSG 200 (930)
Q Consensus 136 ~~~eel~a~~L~~lk~~a~~~--~~~~~~~~VItVPa~f~~~q------------R~al~~Aa-~~AGl~~l~Li~EptA 200 (930)
.++++++..+...+.+..... ...++..+.|++|..++... ...+.+.. +..|+++ .+.|+..|
T Consensus 31 ~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pv-~v~NDa~~ 109 (318)
T TIGR00744 31 TTPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLPV-VVENDANA 109 (318)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCCE-EEechHHH
Confidence 356666666666665544432 12346678888887554221 11233332 3447775 69999999
Q ss_pred HHHHhccccCCCCCCcEEEEEEcCCCceEEEEE
Q 002363 201 AALQYGIDKDFSNESRHVVFYDMGATTTYAALV 233 (930)
Q Consensus 201 AAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv 233 (930)
+|++-..... ....++++++.+|.|- -.+++
T Consensus 110 ~alaE~~~g~-~~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 110 AALGEYKKGA-GKGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHHHhcc-cCCCCcEEEEEeCCcc-EEEEE
Confidence 9987543221 1234689999999875 56665
No 96
>PRK09604 UGMP family protein; Validated
Probab=90.06 E-value=37 Score=38.11 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=36.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhCCC--ccCCCC---CcchhhhcccHHHHh
Q 002363 367 EIYAVELIGGGTRVPKLQAKLQEYLGRT--ELDRHL---DADEAIVLGASLLAA 415 (930)
Q Consensus 367 ~I~~ViLvGG~sriP~V~~~l~~~fg~~--~i~~~~---n~deaVa~GAa~~aa 415 (930)
+++.|+|.||.....++++.|.+.+... .+..+. -.|.+++.|++=+-.
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~ 307 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYER 307 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHH
Confidence 5678999999999999999999988321 333322 458899999984433
No 97
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=88.60 E-value=1.5 Score=52.35 Aligned_cols=80 Identities=28% Similarity=0.260 Sum_probs=49.5
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHH
Q 002363 334 ITRQKFEELCEDLWERSLVPLREVLNYS-GLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASL 412 (930)
Q Consensus 334 ItR~efe~l~~~~~~~i~~~i~~~L~~a-~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~ 412 (930)
-+|.+|-..+-+-+--.....-+.|.+. +. .++.|.++||++|.+...+++.+.||. ++..+ ...|+.+.|+|+
T Consensus 370 ~~~~~l~ravlEgva~~l~~~~~~l~~~~g~---~~~~i~~~GGgars~~w~Qi~Ad~~g~-~v~~~-~~~e~~a~g~A~ 444 (502)
T COG1070 370 HTRAHLARAVLEGVAFALADGLEALEELGGK---PPSRVRVVGGGARSPLWLQILADALGL-PVVVP-EVEEAGALGGAA 444 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccEEEEECCcccCHHHHHHHHHHcCC-eeEec-CcccchHHHHHH
Confidence 3566555443332222222222344433 43 466899999999999999999999996 55433 445666666666
Q ss_pred HHhhhc
Q 002363 413 LAANLS 418 (930)
Q Consensus 413 ~aa~ls 418 (930)
.++...
T Consensus 445 ~~~~~~ 450 (502)
T COG1070 445 LAAAAL 450 (502)
T ss_pred HHHHHh
Confidence 665544
No 98
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=88.29 E-value=8.5 Score=42.76 Aligned_cols=54 Identities=26% Similarity=0.468 Sum_probs=38.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhCCC---ccCCCCCc----chhhhcccHHHHhhhcCC
Q 002363 366 DEIYAVELIGGGTRVPKLQAKLQEYLGRT---ELDRHLDA----DEAIVLGASLLAANLSDG 420 (930)
Q Consensus 366 ~~I~~ViLvGG~sriP~V~~~l~~~fg~~---~i~~~~n~----deaVa~GAa~~aa~ls~~ 420 (930)
.+.+.|+|.|-.+|+|-+.+.+.+.|+.. ++ ..+.+ -..+|.|||+.|.-+.+.
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v-~~l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKV-RKLEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhcccce-eecccccccchhhhhhHHHHhhhhhcc
Confidence 46788999999999999988888777531 11 11222 134899999999877764
No 99
>PLN02914 hexokinase
Probab=87.04 E-value=8.2 Score=45.41 Aligned_cols=59 Identities=22% Similarity=0.161 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHcCC--CeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEe
Q 002363 173 GQAERKGLMQAAELAGM--NVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFS 236 (930)
Q Consensus 173 ~~~qR~al~~Aa~~AGl--~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~ 236 (930)
+..-.+.|.+|.+.-|+ ++..|||+.+|.-++.+... +...+-+=+|-||=-+-+-++.
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~-----~~~~iGlIlGTGtNacY~E~~~ 264 (490)
T PLN02914 204 GKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD-----DDVMVAVILGTGTNACYVERTD 264 (490)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCC-----CCceEEEEEECCeeeEEEeecc
Confidence 33445566666665565 57899999999877654432 2344444467776555554443
No 100
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=86.83 E-value=4.1 Score=48.37 Aligned_cols=56 Identities=21% Similarity=0.304 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCCeeEEechhhHHHHHh-ccccCCCCCCcEEEEEEcCCCceEEEEEE
Q 002363 177 RKGLMQAAELAGMNVLSLVNEHSGAALQY-GIDKDFSNESRHVVFYDMGATTTYAALVY 234 (930)
Q Consensus 177 R~al~~Aa~~AGl~~l~Li~EptAAAl~y-~~~~~~~~~~~~vlv~D~GggT~dvsvv~ 234 (930)
...+..+-+..|+++ ++|+...=|.+.| |....++. ....+|+|+|||+|.+++++
T Consensus 94 ~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~~-~~~~lviDIGGGStEl~~~~ 150 (496)
T PRK11031 94 DEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTGG-ADQRLVVDIGGASTELVTGT 150 (496)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccCC-CCCEEEEEecCCeeeEEEec
Confidence 334445556679997 7888776666655 44433332 24689999999999999983
No 101
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=86.71 E-value=2.8 Score=45.97 Aligned_cols=54 Identities=15% Similarity=0.354 Sum_probs=34.8
Q ss_pred HHHHHH-HHcCCCeeEEechhhHHHHHh-ccccCCCCCCcEEEEEEcCCCceEEEEEE
Q 002363 179 GLMQAA-ELAGMNVLSLVNEHSGAALQY-GIDKDFSNESRHVVFYDMGATTTYAALVY 234 (930)
Q Consensus 179 al~~Aa-~~AGl~~l~Li~EptAAAl~y-~~~~~~~~~~~~vlv~D~GggT~dvsvv~ 234 (930)
.+.+.. +..|+++ .+|+...=|.+.| |....+ ......+++|+|||+|.+++++
T Consensus 75 ~~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l-~~~~~~lviDIGGGStEl~~~~ 130 (285)
T PF02541_consen 75 EFLDRIKKETGIDI-EIISGEEEARLSFLGVLSSL-PPDKNGLVIDIGGGSTELILFE 130 (285)
T ss_dssp HHHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHS-TTTSSEEEEEEESSEEEEEEEE
T ss_pred HHHHHHHHHhCCce-EEecHHHHHHHHHHHHHhhc-cccCCEEEEEECCCceEEEEEE
Confidence 344444 5569987 6777666665555 232223 2346799999999999999984
No 102
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=86.58 E-value=5 Score=42.21 Aligned_cols=71 Identities=24% Similarity=0.324 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEEechhhHHHHHhccccCC--CCCCcEEEEEEc
Q 002363 146 LSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDF--SNESRHVVFYDM 223 (930)
Q Consensus 146 L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~--~~~~~~vlv~D~ 223 (930)
..+|++.++..++.++ .|+++-..|... .++.+--..| || +|.-...+ ...++.++++||
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ss--Ea~~~~~~vA-------------Aa-NW~Ata~~~~e~~~dsci~VD~ 137 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSS--EALKNPREVA-------------AA-NWVATARFLAEEIKDSCILVDM 137 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcCh--hHhcCHHHHH-------------Hh-hhHHHHHHHHHhcCCceEEEec
Confidence 4566777777777665 889999988764 2322211111 11 11111000 122467999999
Q ss_pred CCCceEEEEEE
Q 002363 224 GATTTYAALVY 234 (930)
Q Consensus 224 GggT~dvsvv~ 234 (930)
|+.|+|+--+.
T Consensus 138 GSTTtDIIPi~ 148 (330)
T COG1548 138 GSTTTDIIPIK 148 (330)
T ss_pred CCcccceEeec
Confidence 99999997763
No 103
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=86.38 E-value=4.3 Score=41.43 Aligned_cols=28 Identities=29% Similarity=0.267 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCCeeEEechhhHHHH
Q 002363 176 ERKGLMQAAELAGMNVLSLVNEHSGAAL 203 (930)
Q Consensus 176 qR~al~~Aa~~AGl~~l~Li~EptAAAl 203 (930)
..+.+.++++.|||++..++-+|-|++.
T Consensus 158 ~v~n~~~~v~~agl~v~~i~~~~~A~~~ 185 (187)
T smart00842 158 AIQNLEKCVERAGLEVDGIVLEPLASAE 185 (187)
T ss_pred HHHHHHHHHHHcCCchhhEEehhhhhEe
Confidence 4677889999999999999999999875
No 104
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=86.15 E-value=3.1 Score=45.08 Aligned_cols=98 Identities=12% Similarity=0.092 Sum_probs=55.7
Q ss_pred ccEEEeeCCCCCHHHHHHHHH-HHHHcCCCeeEEechhhHHHHHhccc-cC----CCCCCcEEEEEEcCCCceEEEE-EE
Q 002363 162 KDFVISVPPYFGQAERKGLMQ-AAELAGMNVLSLVNEHSGAALQYGID-KD----FSNESRHVVFYDMGATTTYAAL-VY 234 (930)
Q Consensus 162 ~~~VItVPa~f~~~qR~al~~-Aa~~AGl~~l~Li~EptAAAl~y~~~-~~----~~~~~~~vlv~D~GggT~dvsv-v~ 234 (930)
..+|+|=|.+--+.-...+.+ ..+..++. .+..-+.|+.+++... ++ ......+.||+|-|.+-|-+.- +.
T Consensus 94 ~~ivlTep~~~~psi~~~t~eilFEey~fd--~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~ 171 (400)
T KOG0680|consen 94 HNIVLTEPCMTFPSIQEHTDEILFEEYQFD--AVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVK 171 (400)
T ss_pred ceEEEecccccccchhhhHHHHHHHHhccc--eEeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhc
Confidence 468999887755443333333 34455664 3444445544444311 11 1123469999999998666543 32
Q ss_pred EeecccccccceeccceEEEEEecCCCCcchHHHHHHHHHHHH
Q 002363 235 FSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFA 277 (930)
Q Consensus 235 ~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~ 277 (930)
.. .......+ ..+||..++..|-+.+-
T Consensus 172 g~---------~~~qaV~R-------iDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 172 GI---------PYYQAVKR-------IDVGGKALTNLLKETIS 198 (400)
T ss_pred Cc---------chhhceEE-------eecchHHHHHHHHHHhh
Confidence 21 22222221 37999999999887774
No 105
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=85.68 E-value=3 Score=46.26 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCChhhhHHHHHhHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHHHhh
Q 002363 760 EHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSWLDEKENDQKKTSGFSKPAFTSEEVYEKILKLQDKINSI 839 (930)
Q Consensus 760 ~~l~~~l~~~~~~~~~~~~~~~~it~~e~~~l~~~~~~~~~Wl~~~~~~Q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l 839 (930)
..|..+.-.++..+.+-+.-...++++++..+.+.+++...||+....+ ...|.+.|.+.|+..|+++
T Consensus 570 N~LE~YayslKnqi~dkekLg~Kl~~edKe~~e~av~e~~eWL~~n~~a------------~~Ee~~ek~kele~vv~Pi 637 (663)
T KOG0100|consen 570 NELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESNQDA------------SKEEFKEKKKELEAVVQPI 637 (663)
T ss_pred HHHHHHHHHhhhccCchhHhcccCChhHHHHHHHHHHHHHHHHhhcccc------------cHHHHHHHHHHHHHHHHHH
Confidence 4444555555555544333345789999999999999999999976332 2478999999999999999
Q ss_pred hcCC
Q 002363 840 NRIP 843 (930)
Q Consensus 840 ~~kp 843 (930)
..+-
T Consensus 638 iskl 641 (663)
T KOG0100|consen 638 ISKL 641 (663)
T ss_pred HHHH
Confidence 8653
No 106
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=84.84 E-value=2.7 Score=51.62 Aligned_cols=67 Identities=13% Similarity=0.201 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCCChhhhHHHHHhHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHHH
Q 002363 758 SVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSWLDEKENDQKKTSGFSKPAFTSEEVYEKILKLQDKIN 837 (930)
Q Consensus 758 ai~~l~~~l~~~~~~~~~~~~~~~~it~~e~~~l~~~~~~~~~Wl~~~~~~Q~~~~~~~dP~~~~~di~~k~~~l~~~~~ 837 (930)
+...+..++..++..+.. -...+++++++.+.+.+++++.||+.. ...+++.+++.|+..++
T Consensus 528 akN~le~~i~~~~~~l~~---~~~~~~~~e~~~i~~~l~~~~~wL~~~---------------~~~~i~~k~~~L~~~~~ 589 (627)
T PRK00290 528 ARNQADSLIYQTEKTLKE---LGDKVPADEKEKIEAAIKELKEALKGE---------------DKEAIKAKTEELTQASQ 589 (627)
T ss_pred HHHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHH
Confidence 445566777777777752 235789999999999999999999852 34899999999999999
Q ss_pred hhhcC
Q 002363 838 SINRI 842 (930)
Q Consensus 838 ~l~~k 842 (930)
++..+
T Consensus 590 ~~~~~ 594 (627)
T PRK00290 590 KLGEA 594 (627)
T ss_pred HHHHH
Confidence 99864
No 107
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=84.50 E-value=6.7 Score=44.17 Aligned_cols=159 Identities=17% Similarity=0.195 Sum_probs=81.2
Q ss_pred cEEEEEcCccceEEEEEEeeCC--CCCEEEeeCCCCCccceEEEEEeCCcEEEcHhHHhhHhhCccchHhHhhhhhCCCc
Q 002363 25 AVSSVDLGSEWLKVAVVNLKPG--QSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKPF 102 (930)
Q Consensus 25 ~vvGIDfGTt~s~va~~~~~~g--~~~v~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~ 102 (930)
.++-||=|+|-++|-++.+..+ +.|..+ ..+-=+...|-.-+|.+ +|......++.||.+-.
T Consensus 68 Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~l-e~E~F~~~kPGLSsfad---------------dp~~aA~Sl~~LLd~A~ 131 (453)
T KOG1385|consen 68 YAIIIDAGSTGTRVHVYKFDQCLPGMPPEL-EHELFKEVKPGLSSFAD---------------DPEEAANSLRPLLDVAE 131 (453)
T ss_pred EEEEEecCCCcceEEEEEeccCCCCCCchh-HHHHHhhcCCcccccCC---------------ChHHHHHhHHHHHHHHH
Confidence 5788999999999988732211 111111 00000111233333322 33444455666665532
Q ss_pred hhhHhhHhhcCCCceEEECCCCceEEEeCCCceecHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHHH
Q 002363 103 KQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQ 182 (930)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~ 182 (930)
..+... +++ .--+.+...-|....+.+-...+|..++++.+....-++..-.|+|
T Consensus 132 ~~vP~~----~~~-------kTPi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsI-------------- 186 (453)
T KOG1385|consen 132 AFVPRE----HWK-------KTPIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSI-------------- 186 (453)
T ss_pred hhCCHh----Hhc-------cCceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceee--------------
Confidence 222111 111 1124444444556778888899999999888744322222111221
Q ss_pred HHHHcCCCeeEEechhhH--HHHHhccccCCCCCCcEEEEEEcCCCceEEEEE
Q 002363 183 AAELAGMNVLSLVNEHSG--AALQYGIDKDFSNESRHVVFYDMGATTTYAALV 233 (930)
Q Consensus 183 Aa~~AGl~~l~Li~EptA--AAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv 233 (930)
+.=-+|..= ..++|.+..-.......|.++|+|||+|+++..
T Consensus 187 ---------m~GtdEGv~aWiTiN~Llg~L~~~~~~tvgv~DLGGGSTQi~f~ 230 (453)
T KOG1385|consen 187 ---------MDGTDEGVYAWITINYLLGTLGAPGHRTVGVVDLGGGSTQITFL 230 (453)
T ss_pred ---------ccCcccceeeeeehhhhhcccCCCCCCceEEEEcCCceEEEEEe
Confidence 111111111 135565554222335789999999999999987
No 108
>PLN02666 5-oxoprolinase
Probab=84.27 E-value=18 Score=47.69 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=51.7
Q ss_pred ecHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHH
Q 002363 334 ITRQKFEELCED-LWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASL 412 (930)
Q Consensus 334 ItR~efe~l~~~-~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~ 412 (930)
++-++...-+.. .-..+..+|..+....|+++.+. .++..||++ |..--.|.+.+|-..+..+.++.-.-|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~-~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANH-ALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 344444333333 33445666677666778877664 445555554 78888899999987787888888888999885
Q ss_pred H
Q 002363 413 L 413 (930)
Q Consensus 413 ~ 413 (930)
-
T Consensus 531 a 531 (1275)
T PLN02666 531 A 531 (1275)
T ss_pred h
Confidence 3
No 109
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=84.22 E-value=34 Score=39.86 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=46.6
Q ss_pred eCCCCCHHHHHHHHHHHHHcCCC---eeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEe
Q 002363 168 VPPYFGQAERKGLMQAAELAGMN---VLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFS 236 (930)
Q Consensus 168 VPa~f~~~qR~al~~Aa~~AGl~---~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~ 236 (930)
++...+..--+.+.+|.+.-|+. +..++|+.++.-++.+... +++++-+=+|.||--+-+.+..
T Consensus 185 ~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~-----~~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 185 ATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYED-----PNCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred chhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecC-----CCcEEEEEECCCccceeeeecc
Confidence 34444445577888888888875 7889999999877655443 3677778889998777776654
No 110
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=84.02 E-value=13 Score=41.17 Aligned_cols=55 Identities=18% Similarity=0.334 Sum_probs=37.9
Q ss_pred HHHHHHHH-HHcCCCeeEEechhhHHHHHh-ccccCCCCCCcEEEEEEcCCCceEEEEEE
Q 002363 177 RKGLMQAA-ELAGMNVLSLVNEHSGAALQY-GIDKDFSNESRHVVFYDMGATTTYAALVY 234 (930)
Q Consensus 177 R~al~~Aa-~~AGl~~l~Li~EptAAAl~y-~~~~~~~~~~~~vlv~D~GggT~dvsvv~ 234 (930)
+..+.+.+ +..|+++ ++|+...=|.+.| +....+... ..+++|+|||+|.++++.
T Consensus 87 ~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~~--~~~v~DiGGGSte~~~~~ 143 (300)
T TIGR03706 87 GPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPIA--DGLVVDIGGGSTELILGK 143 (300)
T ss_pred HHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCCC--CcEEEEecCCeEEEEEec
Confidence 44555555 4579987 7888887777766 333333222 249999999999999973
No 111
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=83.52 E-value=1 Score=51.73 Aligned_cols=67 Identities=24% Similarity=0.267 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHcCCCcC--CccEEEEEcCCCCcHHHHHHHHHHh------CCC-ccCCCCCcchhhhcccHHHHhh
Q 002363 350 SLVPLREVLNYSGLKMD--EIYAVELIGGGTRVPKLQAKLQEYL------GRT-ELDRHLDADEAIVLGASLLAAN 416 (930)
Q Consensus 350 i~~~i~~~L~~a~~~~~--~I~~ViLvGG~sriP~V~~~l~~~f------g~~-~i~~~~n~deaVa~GAa~~aa~ 416 (930)
+.+++..+|..--..-. -+..|+|+||++.+|.+.+.|..-+ |.. .|.+..||-..+=+||+.+|+.
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 45556666665422222 2889999999999999999998654 322 4566778888899999999997
No 112
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=83.30 E-value=3.7 Score=50.13 Aligned_cols=67 Identities=18% Similarity=0.258 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCCChhhhHHHHHhHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHHH
Q 002363 758 SVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSWLDEKENDQKKTSGFSKPAFTSEEVYEKILKLQDKIN 837 (930)
Q Consensus 758 ai~~l~~~l~~~~~~~~~~~~~~~~it~~e~~~l~~~~~~~~~Wl~~~~~~Q~~~~~~~dP~~~~~di~~k~~~l~~~~~ 837 (930)
+...+..+|..++..+.. ....+++++++.+...+++++.||++. ...+++.+.+.|+..+.
T Consensus 526 ~kn~lEs~iy~~r~~l~~---~~~~~~~~e~~~l~~~l~~~~~wL~~~---------------d~~~i~~~~~~l~~~~~ 587 (595)
T TIGR02350 526 ARNNADSLAYQAEKTLKE---AGDKLPAEEKEKIEKAVAELKEALKGE---------------DVEEIKAKTEELQQALQ 587 (595)
T ss_pred HHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHH
Confidence 455677777777777753 255789999999999999999999853 22589999999999999
Q ss_pred hhhcC
Q 002363 838 SINRI 842 (930)
Q Consensus 838 ~l~~k 842 (930)
++..+
T Consensus 588 ~~~~~ 592 (595)
T TIGR02350 588 KLAEA 592 (595)
T ss_pred HHHHH
Confidence 88753
No 113
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=82.90 E-value=21 Score=44.03 Aligned_cols=75 Identities=15% Similarity=0.133 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCc--HHHHH-HHHHHhCCC--------ccCC-CCCcchhhhc
Q 002363 341 ELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRV--PKLQA-KLQEYLGRT--------ELDR-HLDADEAIVL 408 (930)
Q Consensus 341 ~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sri--P~V~~-~l~~~fg~~--------~i~~-~~n~deaVa~ 408 (930)
.++...++.+...+-.++...-+.....+.|+|-||-++- +++.+ .+.+.|-.+ .+.. -+--+.+.-.
T Consensus 243 ~~A~~~~~~~~~~lg~~~~nl~~~~~~p~~vvigGGIs~~~~~~l~~~~f~~~f~~kg~~~~~~~~ipv~~i~~~~~~l~ 322 (638)
T PRK14101 243 ALALEAVECFCAILGTFAGNLALTLGALGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLANIPTYLITAEYPAFL 322 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEeCcHHHHHHHHcChHHHHHHHHhCCChHHHHhcCCEEEEeCCChhHH
Confidence 4455566666666666665543333345678888888633 55543 555555332 1111 1122346677
Q ss_pred ccHHHHh
Q 002363 409 GASLLAA 415 (930)
Q Consensus 409 GAa~~aa 415 (930)
|||.++.
T Consensus 323 Gaa~~~~ 329 (638)
T PRK14101 323 GVSAILA 329 (638)
T ss_pred HHHHHHH
Confidence 8865444
No 114
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=82.58 E-value=4.5 Score=49.91 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCCChhhhHHHHHhHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHH
Q 002363 757 ASVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSWLDEKENDQKKTSGFSKPAFTSEEVYEKILKLQDKI 836 (930)
Q Consensus 757 ~ai~~l~~~l~~~~~~~~~~~~~~~~it~~e~~~l~~~~~~~~~Wl~~~~~~Q~~~~~~~dP~~~~~di~~k~~~l~~~~ 836 (930)
++...+..+|..++..+.. -...+++++++.+.+.+++++.||++. ...+++.+.+.|+..+
T Consensus 568 eakN~lEs~iy~~r~~l~e---~~~~~s~~ere~i~~~l~~~~~WL~~~---------------d~~~i~~k~~eL~~~l 629 (663)
T PTZ00400 568 DAKNEAETLIYSVEKQLSD---LKDKISDADKDELKQKITKLRSTLSSE---------------DVDSIKDKTKQLQEAS 629 (663)
T ss_pred HHHHHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHH
Confidence 3555666667777766642 345779999999999999999999851 1479999999999999
Q ss_pred HhhhcC
Q 002363 837 NSINRI 842 (930)
Q Consensus 837 ~~l~~k 842 (930)
.++..+
T Consensus 630 ~~l~~k 635 (663)
T PTZ00400 630 WKISQQ 635 (663)
T ss_pred HHHHHH
Confidence 999973
No 115
>PTZ00288 glucokinase 1; Provisional
Probab=82.55 E-value=26 Score=40.31 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=18.0
Q ss_pred CCccEEEEEcCccceEEEEE
Q 002363 22 SQSAVSSVDLGSEWLKVAVV 41 (930)
Q Consensus 22 ~~~~vvGIDfGTt~s~va~~ 41 (930)
+...++|+|.|.|+++++++
T Consensus 24 ~~~~~~~~DiGgt~~R~~~~ 43 (405)
T PTZ00288 24 SGPIFVGCDVGGTNARVGFA 43 (405)
T ss_pred cCCeEEEEEecCCceEEEEE
Confidence 45679999999999999998
No 116
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=81.31 E-value=5.5 Score=47.88 Aligned_cols=76 Identities=16% Similarity=0.277 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhccchHHHhHHhhhcchHHHHHHHHHHHHHHHHHhccccCCCCCChhhhHHHHHhHHHHHHHHHHHH
Q 002363 727 TAKEFQERLDVLKAIGDPVFFRFKELTARPASVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSWLDEKE 806 (930)
Q Consensus 727 ~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~ai~~l~~~l~~~~~~~~~~~~~~~~it~~e~~~l~~~~~~~~~Wl~~~~ 806 (930)
....|......|.+ +..+=.+...|..|.+.|..+|-.++..+.+ ++-...-+++|+..|.+.+.....||.+-.
T Consensus 635 ~~~~~~~~~~kl~d----~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d-~ey~e~at~EEk~~L~~~~~~~~~Wleed~ 709 (902)
T KOG0104|consen 635 NENALDAAVAKLED----FVQKEKEKSEREEASNELEAFLFELQDKLDD-DEYAEVATEEEKKILKKKVSLLMDWLEEDG 709 (902)
T ss_pred chhHHHHHHHHHHH----HHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC-chHhhhcCHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445444444443 3355567778899999999999999999876 332334589999999999999999999877
Q ss_pred H
Q 002363 807 N 807 (930)
Q Consensus 807 ~ 807 (930)
.
T Consensus 710 ~ 710 (902)
T KOG0104|consen 710 S 710 (902)
T ss_pred c
Confidence 3
No 117
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=81.10 E-value=33 Score=36.85 Aligned_cols=48 Identities=19% Similarity=0.138 Sum_probs=36.4
Q ss_pred CcCCccEEEEEcCCCCcHHHHHHHHHHh---CCCccCCCCCcchhhhcccH
Q 002363 364 KMDEIYAVELIGGGTRVPKLQAKLQEYL---GRTELDRHLDADEAIVLGAS 411 (930)
Q Consensus 364 ~~~~I~~ViLvGG~sriP~V~~~l~~~f---g~~~i~~~~n~deaVa~GAa 411 (930)
-...+|+|+|+||..+...+-++|.+++ ..-.+...-+-.+|-|.|+.
T Consensus 293 L~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~l 343 (358)
T COG3426 293 LKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGAL 343 (358)
T ss_pred cCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhH
Confidence 3468999999999999999999998764 32233344566678898886
No 118
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=80.65 E-value=6.8 Score=44.27 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhC
Q 002363 350 SLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLG 392 (930)
Q Consensus 350 i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg 392 (930)
+...|.+++.... ...+.|+++||+++.|++.+.|++.++
T Consensus 272 TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~ 311 (365)
T PRK09585 272 TAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLP 311 (365)
T ss_pred HHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcC
Confidence 3444455554332 234689999999999999999999996
No 119
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=80.27 E-value=5.3 Score=45.27 Aligned_cols=30 Identities=33% Similarity=0.544 Sum_probs=22.3
Q ss_pred CCccEEEEEcCccceEEEEEEeeCCCCCEEE
Q 002363 22 SQSAVSSVDLGSEWLKVAVVNLKPGQSPISI 52 (930)
Q Consensus 22 ~~~~vvGIDfGTt~s~va~~~~~~g~~~v~i 52 (930)
....++.||||.||.+||++.+ +|.+.+++
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l-~g~gt~~~ 102 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVL-GGDGTFDI 102 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEe-CCCCCccc
Confidence 3568999999999999999954 33334433
No 120
>PRK13411 molecular chaperone DnaK; Provisional
Probab=80.21 E-value=6.9 Score=48.21 Aligned_cols=70 Identities=11% Similarity=0.182 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCCChhhhHHHHHhHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHH
Q 002363 757 ASVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSWLDEKENDQKKTSGFSKPAFTSEEVYEKILKLQDKI 836 (930)
Q Consensus 757 ~ai~~l~~~l~~~~~~~~~~~~~~~~it~~e~~~l~~~~~~~~~Wl~~~~~~Q~~~~~~~dP~~~~~di~~k~~~l~~~~ 836 (930)
++...+..+|..++..+..+ ...++++++..+...+++++.||.+ +. ...++++.+++.|+..+
T Consensus 529 eakN~lEs~iy~~r~~l~~~---~~~~~~~er~~i~~~l~~~~~wL~~----~~---------~~~~~~~~~~~el~~~~ 592 (653)
T PRK13411 529 ELKNQADSLLYSYESTLKEN---GELISEELKQRAEQKVEQLEAALTD----PN---------ISLEELKQQLEEFQQAL 592 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHh---hccCCHHHHHHHHHHHHHHHHHHhc----CC---------CCHHHHHHHHHHHHHHH
Confidence 35566777777777777642 5678999999999999999999974 10 24579999999999999
Q ss_pred HhhhcC
Q 002363 837 NSINRI 842 (930)
Q Consensus 837 ~~l~~k 842 (930)
.++..+
T Consensus 593 ~~i~~~ 598 (653)
T PRK13411 593 LAIGAE 598 (653)
T ss_pred HHHHHH
Confidence 998853
No 121
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=80.15 E-value=4 Score=44.27 Aligned_cols=70 Identities=21% Similarity=0.245 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHh----CCCccCCCCCcchhhhcccHHHH
Q 002363 342 LCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYL----GRTELDRHLDADEAIVLGASLLA 414 (930)
Q Consensus 342 l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~f----g~~~i~~~~n~deaVa~GAa~~a 414 (930)
+++...+.+...+..++.+.+..... |+|+||..+.+.+++.+.+.+ ...++..+..|....+.||+++|
T Consensus 198 Il~~a~~~la~~i~~~~~~~~~~~~~---v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 198 ILAEAADELAELIKAVLKRLGPEKEP---VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTCCCCS---EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCe---EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 44444455555556666655433222 999999999977777664444 33244567788899999999986
No 122
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=79.00 E-value=6.6 Score=48.42 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCCChhhhHHHHHhHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHH
Q 002363 757 ASVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSWLDEKENDQKKTSGFSKPAFTSEEVYEKILKLQDKI 836 (930)
Q Consensus 757 ~ai~~l~~~l~~~~~~~~~~~~~~~~it~~e~~~l~~~~~~~~~Wl~~~~~~Q~~~~~~~dP~~~~~di~~k~~~l~~~~ 836 (930)
++...+..+|..++..+..- +-...++++++..+.+.+++++.||++.. .-+..++..|+..|+..+
T Consensus 539 eakN~lEs~Iy~~r~~L~~~-~~~~~~t~ee~~~l~~~l~~~~~wL~~~~------------~~~~~~~~~kl~eL~~~~ 605 (653)
T PTZ00009 539 EAKNGLENYCYSMKNTLQDE-KVKGKLSDSDKATIEKAIDEALEWLEKNQ------------LAEKEEFEHKQKEVESVC 605 (653)
T ss_pred HHHhhhHHHHHHHHHHHhhh-hhhccCCHHHHHHHHHHHHHHHHHHhcCC------------chhHHHHHHHHHHHHHHH
Confidence 35566777777777777531 12346799999999999999999997411 124579999999999999
Q ss_pred HhhhcCC
Q 002363 837 NSINRIP 843 (930)
Q Consensus 837 ~~l~~kp 843 (930)
.++..+.
T Consensus 606 ~pi~~r~ 612 (653)
T PTZ00009 606 NPIMTKM 612 (653)
T ss_pred HHHHHHH
Confidence 9998653
No 123
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=77.82 E-value=9.4 Score=45.01 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCCeeEEechhhHHHHH-hccccCCCCCCcEEEEEEcCCCceEEEEEE
Q 002363 177 RKGLMQAAELAGMNVLSLVNEHSGAALQ-YGIDKDFSNESRHVVFYDMGATTTYAALVY 234 (930)
Q Consensus 177 R~al~~Aa~~AGl~~l~Li~EptAAAl~-y~~~~~~~~~~~~vlv~D~GggT~dvsvv~ 234 (930)
-..+..+-+..|+++ .+|+.-+=|-+. +|.-..++. ....+|+|+|||+|.+++..
T Consensus 91 ~eFl~rv~~~~G~~i-evIsGeeEArl~~lGv~~~~~~-~~~~lv~DIGGGStEl~~g~ 147 (492)
T COG0248 91 DEFLARVEKELGLPI-EVISGEEEARLIYLGVASTLPR-KGDGLVIDIGGGSTELVLGD 147 (492)
T ss_pred HHHHHHHHHHhCCce-EEeccHHHHHHHHHHHHhcCCC-CCCEEEEEecCCeEEEEEec
Confidence 445777777889987 666654444443 344444443 57899999999999999984
No 124
>PTZ00107 hexokinase; Provisional
Probab=77.49 E-value=1.6e+02 Score=34.78 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC--eeEEechhhHHHHHhccc
Q 002363 169 PPYFGQAERKGLMQAAELAGMN--VLSLVNEHSGAALQYGID 208 (930)
Q Consensus 169 Pa~f~~~qR~al~~Aa~~AGl~--~l~Li~EptAAAl~y~~~ 208 (930)
|..-+..-.+.|.+|...-|++ +..|||+.+|.-++.+..
T Consensus 189 ~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~ 230 (464)
T PTZ00107 189 DPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQ 230 (464)
T ss_pred CCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhc
Confidence 5566666788899998888875 689999999987765443
No 125
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=77.09 E-value=19 Score=38.28 Aligned_cols=71 Identities=25% Similarity=0.398 Sum_probs=47.9
Q ss_pred cCccccEEE--eeCCCCCHHHHHHHHHHHHHcCCCeeEEechhhHHHHHhcc-ccCCCCCCcEEEEEEcCCCceEEEEE
Q 002363 158 KLAVKDFVI--SVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGI-DKDFSNESRHVVFYDMGATTTYAALV 233 (930)
Q Consensus 158 ~~~~~~~VI--tVPa~f~~~qR~al~~Aa~~AGl~~l~Li~EptAAAl~y~~-~~~~~~~~~~vlv~D~GggT~dvsvv 233 (930)
+..+..++. .+|.+|+. -+++++++.-+|.+. ++-++-+||+.=++ +... .....++++|+|-|+|-+.++
T Consensus 111 g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~--~vmDTg~AAvlGal~d~~v-~~~~~~~~vniGN~HTlaa~v 184 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE--VVMDTGPAAVLGALCDPEV-SSREGIIVVNIGNGHTLAALV 184 (254)
T ss_pred CCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc--eEecCHHHHHhhhhcChhh-hccCCeEEEEeCCccEEEEEE
Confidence 455677888 89999875 346666666666665 55555555553333 2222 234789999999999999888
No 126
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=75.78 E-value=6.8 Score=44.32 Aligned_cols=71 Identities=27% Similarity=0.294 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCcc------CCCCCcchhhhcccHHHH
Q 002363 341 ELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTEL------DRHLDADEAIVLGASLLA 414 (930)
Q Consensus 341 ~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i------~~~~n~deaVa~GAa~~a 414 (930)
+++.-+..=+...|.+.++.... .++.|+++||+.+.|++.+.|++.++...| ..+.+.-||++. |++|
T Consensus 261 D~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aF--A~La 335 (364)
T PF03702_consen 261 DILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAF--AWLA 335 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHH--HHHH
Confidence 33344444444555555555432 378999999999999999999999987433 333455565544 4555
Q ss_pred hh
Q 002363 415 AN 416 (930)
Q Consensus 415 a~ 416 (930)
..
T Consensus 336 ~~ 337 (364)
T PF03702_consen 336 YR 337 (364)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 127
>PLN02939 transferase, transferring glycosyl groups
Probab=75.24 E-value=77 Score=40.39 Aligned_cols=177 Identities=18% Similarity=0.172 Sum_probs=112.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhhccCc-ccccccCCHHHHHHHHHHHHHHHHHHhhcC--
Q 002363 647 LSKEALVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETS-EDYEKVSTSEERQSFVEKLDEAQEWLYTDG-- 723 (930)
Q Consensus 647 ls~~~l~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iY~~r~~l~~~-~~~~~~~~~~er~~l~~~l~e~~~WL~~~g-- 723 (930)
+-+++++.++.++.....-|+..+.++.-+.-|++++-++..++-.. ++..+.+ +-+.+.+-++++-...-|.--.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 315 (977)
T PLN02939 237 LLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLS-PLQYDCWWEKVENLQDLLDRATNQ 315 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-chhHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888888999999999999999999999999999999988431 1122322 2334456666666655554311
Q ss_pred -CCC-----CHHHHHHHHHHHHhccchHHHhHHhhhcchHHHHHHHHHHHHHHHHHhccccCCCCCChhhhHHHHHhHHH
Q 002363 724 -EDA-----TAKEFQERLDVLKAIGDPVFFRFKELTARPASVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSET 797 (930)
Q Consensus 724 -~~a-----~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~ai~~l~~~l~~~~~~~~~~~~~~~~it~~e~~~l~~~~~~ 797 (930)
+.+ .-+++.+|.+.|+... .+..-++.|+..++.+++.+..++..+...+..- ...++--...+++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 387 (977)
T PLN02939 316 VEKAALVLDQNQDLRDKVDKLEASL----KEANVSKFSSYKVELLQQKLKLLEERLQASDHEI----HSYIQLYQESIKE 387 (977)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHH----HHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHH
Confidence 100 1234555555555332 3445566788899888888888887776543211 1123334456677
Q ss_pred HHHHHHHHHHHhhc----CCCCCCCcccHHHHHHHHHHH
Q 002363 798 FKSWLDEKENDQKK----TSGFSKPAFTSEEVYEKILKL 832 (930)
Q Consensus 798 ~~~Wl~~~~~~Q~~----~~~~~dP~~~~~di~~k~~~l 832 (930)
+++-|+....++++ .|.++.|--.+++|..+++.+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~id~~ 426 (977)
T PLN02939 388 FQDTLSKLKEESKKRSLEHPADDMPSEFWSRILLLIDGW 426 (977)
T ss_pred HHHHHHHHHhhhhcccccCchhhCCHHHHHHHHHHHHHH
Confidence 77777777777766 345556665667777777665
No 128
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=74.27 E-value=2e+02 Score=34.51 Aligned_cols=52 Identities=17% Similarity=0.107 Sum_probs=37.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhCC--CccCCCC---CcchhhhcccHHHHhhhc
Q 002363 367 EIYAVELIGGGTRVPKLQAKLQEYLGR--TELDRHL---DADEAIVLGASLLAANLS 418 (930)
Q Consensus 367 ~I~~ViLvGG~sriP~V~~~l~~~fg~--~~i~~~~---n~deaVa~GAa~~aa~ls 418 (930)
.+..|+|.||.....++++.|.+.+.. -.+..+. -.|.+++.|++.+....+
T Consensus 245 g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 245 GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 356899999999999999999966522 1333332 568899999887655443
No 129
>CHL00094 dnaK heat shock protein 70
Probab=73.16 E-value=9.8 Score=46.64 Aligned_cols=66 Identities=12% Similarity=0.186 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCCChhhhHHHHHhHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHHH
Q 002363 758 SVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSWLDEKENDQKKTSGFSKPAFTSEEVYEKILKLQDKIN 837 (930)
Q Consensus 758 ai~~l~~~l~~~~~~~~~~~~~~~~it~~e~~~l~~~~~~~~~Wl~~~~~~Q~~~~~~~dP~~~~~di~~k~~~l~~~~~ 837 (930)
+...+..+|..++..+.. -...++++++..+...+++++.||.+. ...+++.+++.|++.++
T Consensus 530 ~kn~le~~i~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~~~wl~~~---------------~~~~~~~~~~~l~~~~~ 591 (621)
T CHL00094 530 LKNQAESLCYQAEKQLKE---LKDKISEEKKEKIENLIKKLRQALQND---------------NYESIKSLLEELQKALM 591 (621)
T ss_pred HHHHhHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHH
Confidence 445666677777777752 345789999999999999999999852 11788999999999999
Q ss_pred hhhc
Q 002363 838 SINR 841 (930)
Q Consensus 838 ~l~~ 841 (930)
++..
T Consensus 592 ~~~~ 595 (621)
T CHL00094 592 EIGK 595 (621)
T ss_pred HHHH
Confidence 9986
No 130
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=72.96 E-value=5 Score=49.06 Aligned_cols=42 Identities=19% Similarity=0.333 Sum_probs=26.7
Q ss_pred eeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEE
Q 002363 191 VLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVY 234 (930)
Q Consensus 191 ~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~ 234 (930)
+..+++-|.|-.+....-...... +++++||||.|||++++.
T Consensus 255 v~tI~SGPAagvvGAa~ltg~~~g--~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 255 VETILSGPAAGVVGAAYLTGLKAG--NAIVFDMGGTSTDVALII 296 (674)
T ss_pred eeeEeeccHHHHHHHHHhcccccC--CEEEEEcCCcceeeeeee
Confidence 334666666654443222111112 599999999999999986
No 131
>PLN02362 hexokinase
Probab=72.92 E-value=6.4 Score=46.51 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.2
Q ss_pred CccEEEEEcCccceEEEEEEee
Q 002363 23 QSAVSSVDLGSEWLKVAVVNLK 44 (930)
Q Consensus 23 ~~~vvGIDfGTt~s~va~~~~~ 44 (930)
....++||||.||.+|+.+.+.
T Consensus 94 ~G~fLAlDlGGTNfRV~~V~L~ 115 (509)
T PLN02362 94 IGTYYALDLGGTNFRVLRVQLG 115 (509)
T ss_pred ceeEEEEecCCceEEEEEEEec
Confidence 4679999999999999999654
No 132
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=72.91 E-value=17 Score=40.42 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=39.4
Q ss_pred ecHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhC
Q 002363 334 ITRQKFEELCED----LWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLG 392 (930)
Q Consensus 334 ItR~efe~l~~~----~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg 392 (930)
+..++.+++|.. .++-+.+..+++|+..+. +.++++||-+..-.+|+++++...
T Consensus 229 ~~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~~-----~~lvi~GGVaaN~~LR~~l~~~~~ 286 (342)
T COG0533 229 LNEEDKEDIAASFQEAVFDMLVEKTERALKHTGK-----KELVIAGGVAANSRLREMLEEMCK 286 (342)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CEEEEeccHHHhHHHHHHHHHHHH
Confidence 334455555544 556666677777776654 569999999999999999998774
No 133
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=71.07 E-value=5.9 Score=38.21 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=16.3
Q ss_pred ccEEEEEcCccceEEEEE
Q 002363 24 SAVSSVDLGSEWLKVAVV 41 (930)
Q Consensus 24 ~~vvGIDfGTt~s~va~~ 41 (930)
|.++|||+|+..+.+|+.
T Consensus 1 mriL~lD~G~kriGiAvs 18 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVS 18 (135)
T ss_dssp -EEEEEEECSSEEEEEEE
T ss_pred CeEEEEEeCCCeEEEEEe
Confidence 568999999999999998
No 134
>PLN03184 chloroplast Hsp70; Provisional
Probab=71.02 E-value=19 Score=44.62 Aligned_cols=66 Identities=12% Similarity=0.220 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCCChhhhHHHHHhHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHHH
Q 002363 758 SVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSWLDEKENDQKKTSGFSKPAFTSEEVYEKILKLQDKIN 837 (930)
Q Consensus 758 ai~~l~~~l~~~~~~~~~~~~~~~~it~~e~~~l~~~~~~~~~Wl~~~~~~Q~~~~~~~dP~~~~~di~~k~~~l~~~~~ 837 (930)
+...+..+|..++..+.. -...++++++..+.+.+++++.||+.. ...+++.+.+.|...+.
T Consensus 567 akN~lE~~iy~~r~~l~e---~~~~~~~eer~~l~~~l~~~e~wL~~~---------------d~~~ik~~~~~l~~~l~ 628 (673)
T PLN03184 567 TKNQADSVVYQTEKQLKE---LGDKVPADVKEKVEAKLKELKDAIASG---------------STQKMKDAMAALNQEVM 628 (673)
T ss_pred HHHhHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHH
Confidence 445556666667766642 334679999999999999999999741 13678888888888888
Q ss_pred hhhc
Q 002363 838 SINR 841 (930)
Q Consensus 838 ~l~~ 841 (930)
++..
T Consensus 629 ~l~~ 632 (673)
T PLN03184 629 QIGQ 632 (673)
T ss_pred HHHH
Confidence 8775
No 135
>PLN02405 hexokinase
Probab=69.68 E-value=7.3 Score=45.94 Aligned_cols=58 Identities=26% Similarity=0.182 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHcCC--CeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEE
Q 002363 173 GQAERKGLMQAAELAGM--NVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYF 235 (930)
Q Consensus 173 ~~~qR~al~~Aa~~AGl--~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~ 235 (930)
...-.+.|.+|.+.-|+ ++..|||+.++.-++.++.. +...+-+=+|-||=-+-+-++
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~-----~~~~iG~IlGTGtNacY~E~~ 263 (497)
T PLN02405 204 GQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYN-----PDVVAAVILGTGTNAAYVERA 263 (497)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCC-----CCceEEEEEeCCeeeEEEeec
Confidence 34445666777766676 46899999999877654432 234444446666544444433
No 136
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=68.71 E-value=20 Score=41.43 Aligned_cols=83 Identities=22% Similarity=0.214 Sum_probs=57.1
Q ss_pred ecHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHH
Q 002363 334 ITRQKFEELC-EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASL 412 (930)
Q Consensus 334 ItR~efe~l~-~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~ 412 (930)
.+|++|-... +.+.-+..+.|+..=++++. .+..+-+=||.++..++.+.+.+.+|. +|.++.+ .|+.|+||||
T Consensus 371 t~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~-~V~Rp~~-~EtTAlGaA~ 445 (499)
T COG0554 371 TTKAHIARATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGV-PVERPVV-LETTALGAAY 445 (499)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHhCC-eeecccc-chhhHHHHHH
Confidence 3455543322 33333444444444444554 578888999999999999999999996 6666644 5789999999
Q ss_pred HHhhhcCCc
Q 002363 413 LAANLSDGI 421 (930)
Q Consensus 413 ~aa~ls~~~ 421 (930)
.|..-.+..
T Consensus 446 lAGla~G~w 454 (499)
T COG0554 446 LAGLAVGFW 454 (499)
T ss_pred HHhhhhCcC
Confidence 998766543
No 137
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=67.73 E-value=2e+02 Score=31.89 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=33.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHh---CCCccCCC---CCcchhhhcccH
Q 002363 367 EIYAVELIGGGTRVPKLQAKLQEYL---GRTELDRH---LDADEAIVLGAS 411 (930)
Q Consensus 367 ~I~~ViLvGG~sriP~V~~~l~~~f---g~~~i~~~---~n~deaVa~GAa 411 (930)
.++.|+|.||.....++.+.|.+.+ +- .+..+ +-.|.+++.|++
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~-~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGL-EVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCC-EEECCCCCCCChHHHHHHHH
Confidence 4678999999999999999999887 43 23222 245888888887
No 138
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=67.15 E-value=17 Score=39.54 Aligned_cols=86 Identities=19% Similarity=0.185 Sum_probs=55.8
Q ss_pred EecHHHHHHHHHH---HHHHHHHHHHHHHHH-cCCCc--CCccEEEEEcC--CCCcH-HHHHHHHHHhCCCccCCCCCcc
Q 002363 333 SITRQKFEELCED---LWERSLVPLREVLNY-SGLKM--DEIYAVELIGG--GTRVP-KLQAKLQEYLGRTELDRHLDAD 403 (930)
Q Consensus 333 ~ItR~efe~l~~~---~~~~i~~~i~~~L~~-a~~~~--~~I~~ViLvGG--~sriP-~V~~~l~~~fg~~~i~~~~n~d 403 (930)
..+++||.+.+.. ....+..++.-+... +.+.. .....|+|.|- ++|.| .|++.|+++|.. ++ ..+..
T Consensus 222 ~~~~eE~~~~~~~~e~~~lA~dal~~~vameIasLl~l~~~~~~IvLSGs~g~~r~~~~v~~~I~~~L~~-~V-~~L~~- 298 (326)
T TIGR03281 222 ENAKEEILNNYNGDEPGRLALDSLAMSVAMEIASLGLLDCKEAGVVLAGSGGTLREPINFSGKIKRVLSC-KV-LVLDS- 298 (326)
T ss_pred cCCHHHHHHHhccChhHHHHHHHHHHHHHHHHHhheeccCCCCcEEEeCcchhccCchHHHHHHHHHhCC-Ce-EEecc-
Confidence 5678888776632 222333333333222 12111 23458999987 99999 999999999974 33 23343
Q ss_pred hhhhcccHHHHhhhcCCc
Q 002363 404 EAIVLGASLLAANLSDGI 421 (930)
Q Consensus 404 eaVa~GAa~~aa~ls~~~ 421 (930)
++.|.|+|+.|.-+.+..
T Consensus 299 ksAA~G~AiIA~dI~gGk 316 (326)
T TIGR03281 299 ESAAIGLALIAEDIFSGK 316 (326)
T ss_pred hhhhhhHHHHHHHHhCCc
Confidence 789999999998877654
No 139
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=66.94 E-value=1.4e+02 Score=33.14 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHh
Q 002363 349 RSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYL 391 (930)
Q Consensus 349 ~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~f 391 (930)
-+.+.+.++++.. .++.|+|.||.....++++.|.+.+
T Consensus 245 ~l~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 245 HLIEKTKRALKDT-----GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 3444445555443 4678999999999999999999887
No 140
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=66.61 E-value=2.3e+02 Score=32.00 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhC
Q 002363 346 LWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLG 392 (930)
Q Consensus 346 ~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg 392 (930)
+++-+.+.+.++++.. .+..|+++||-+...++|+.|++.+.
T Consensus 247 v~~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~~ 288 (345)
T PTZ00340 247 IFAMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMAK 288 (345)
T ss_pred HHHHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHHH
Confidence 3444444555555543 46789999999999999999999874
No 141
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=66.33 E-value=16 Score=29.81 Aligned_cols=37 Identities=11% Similarity=0.156 Sum_probs=30.5
Q ss_pred HHHhccCccccEEEeeCCCCCHHHHHHHHHHHHHcCCCe
Q 002363 153 VDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNV 191 (930)
Q Consensus 153 a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~ 191 (930)
.+.+.... ...++.|+.++..+|..+.+.|+..||..
T Consensus 8 i~~F~~~~--~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 8 LEDFRASD--NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred HHHHHcCc--ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 34444433 68899999999999999999999999865
No 142
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=64.02 E-value=87 Score=34.61 Aligned_cols=39 Identities=23% Similarity=0.208 Sum_probs=27.0
Q ss_pred HcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCC
Q 002363 186 LAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGAT 226 (930)
Q Consensus 186 ~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~Ggg 226 (930)
..|+++ .+-|+..|||++......- .....++++-+|-|
T Consensus 105 ~~~~Pv-~veNDan~aalaE~~~g~~-~~~~~~~~i~~gtG 143 (314)
T COG1940 105 RLGLPV-FVENDANAAALAEAWFGAG-RGIDDVVYITLGTG 143 (314)
T ss_pred HHCCCE-EEecHHHHHHHHHHHhCCC-CCCCCEEEEEEccc
Confidence 446665 7999999999986554311 23457888888776
No 143
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=63.97 E-value=31 Score=38.34 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHhHHhhhc
Q 002363 711 KLDEAQEWLYTDGEDATAKEFQERLDVLKAIGDPVFFRFKELTA 754 (930)
Q Consensus 711 ~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~ 754 (930)
+|++.++||-++ +. +++.+.+++.+-++-+-||.-++.|+-.
T Consensus 9 ~LeeLe~kLa~~-d~-~Kd~V~~~I~ea~~sILPlRL~FNeFi~ 50 (379)
T PF11593_consen 9 KLEELEEKLASN-DN-SKDSVMDKISEAQDSILPLRLQFNEFIQ 50 (379)
T ss_pred cHHHHHHHHhcC-Cc-hHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 588999999854 44 9999999999999999999888877643
No 144
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=63.77 E-value=5.8 Score=35.52 Aligned_cols=17 Identities=41% Similarity=0.456 Sum_probs=15.9
Q ss_pred cEEEEEcCccceEEEEE
Q 002363 25 AVSSVDLGSEWLKVAVV 41 (930)
Q Consensus 25 ~vvGIDfGTt~s~va~~ 41 (930)
.++|||+|.+++++|++
T Consensus 2 ~ilgiD~Ggt~i~~a~~ 18 (99)
T smart00732 2 RVLGLDPGRKGIGVAVV 18 (99)
T ss_pred cEEEEccCCCeEEEEEE
Confidence 48999999999999998
No 145
>PRK00976 hypothetical protein; Provisional
Probab=61.90 E-value=17 Score=40.23 Aligned_cols=51 Identities=20% Similarity=0.334 Sum_probs=39.1
Q ss_pred CccEEEEEcCCCCcH--HHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhhcCC
Q 002363 367 EIYAVELIGGGTRVP--KLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDG 420 (930)
Q Consensus 367 ~I~~ViLvGG~sriP--~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls~~ 420 (930)
+.+.|+|-||-++.+ .+.+.|++++.. .+ .. -..++.++|||+.|..+.+.
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~-~~-a~-LG~dAGaiGAA~iA~~i~~G 315 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDK-KV-LV-LGKESAAIGLALIARDIFNG 315 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhcc-cc-cc-cCCchHHHHHHHHHHHHhCC
Confidence 467899999999998 889999988864 22 22 24579999999998876543
No 146
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=61.36 E-value=27 Score=42.57 Aligned_cols=71 Identities=21% Similarity=0.410 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHHHHHHHHhccccCCCCCChhhhHHHHHhHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHH
Q 002363 755 RPASVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSWLDEKENDQKKTSGFSKPAFTSEEVYEKILKLQD 834 (930)
Q Consensus 755 rp~ai~~l~~~l~~~~~~~~~~~~~~~~it~~e~~~l~~~~~~~~~Wl~~~~~~Q~~~~~~~dP~~~~~di~~k~~~l~~ 834 (930)
+-.+.+.+...+..++..++.. +..+++++. .+.+++...||++....-. ..+++.|+..|+.
T Consensus 529 ~~e~kn~lE~~i~~~r~~l~~~---~~~~~~~~~---~~~l~~~~~wl~~~~~~~~-----------~~e~~~kl~~L~~ 591 (602)
T PF00012_consen 529 RAEAKNELESYIYELRDKLEED---KDFVSEEEK---KKKLKETSDWLEDNGEDAD-----------KEEYKEKLEELKK 591 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCC---GGGSTHHHH---HHHHHHHHHHHHHHTTTSH-----------HHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhh---hccCCHHHH---HHHHHHHHHHHHhhccCCC-----------HHHHHHHHHHHHH
Confidence 3345566777777777777654 555666665 7899999999998764222 6899999999999
Q ss_pred HHHhhhcC
Q 002363 835 KINSINRI 842 (930)
Q Consensus 835 ~~~~l~~k 842 (930)
.++++.++
T Consensus 592 ~~~~i~~r 599 (602)
T PF00012_consen 592 VIEPIKKR 599 (602)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 147
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=61.23 E-value=0.21 Score=58.94 Aligned_cols=203 Identities=19% Similarity=0.087 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhHHhHHH--HHHhhccCcccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCCHH
Q 002363 653 VDAEAKLEELDKKDADRRRTA-ELKNNLEGYIY--ATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAK 729 (930)
Q Consensus 653 ~~~~~~l~~~~~~D~~~~~~~-eakN~LEs~iY--~~r~~l~~~~~~~~~~~~~er~~l~~~l~e~~~WL~~~g~~a~~~ 729 (930)
.++.-||.....+.++..... ++.+++|+|++ +++.+|..++ |.+.+.+-......-..+...+ .+..++|...-
T Consensus 260 ~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReE-fEel~~plL~rv~~p~~~~l~d-~~l~~edi~~V 337 (727)
T KOG0103|consen 260 AKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREE-FEELSAPLLERVEVPLLKALAD-AKLKVEDIHAV 337 (727)
T ss_pred hhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHH-HHHHHHHHHHhhhHHHHHHHHH-hcCccccceeE
Confidence 444445555555555544444 68999999999 8999998765 7777766554444444444555 55556677676
Q ss_pred HHHHHHHHHHhccchHHHhHHhhhcchHHHHHHHHHHHHHHHHHhccccCCCCCChhhhHHHHHhHHHHHHHHHHHH-HH
Q 002363 730 EFQERLDVLKAIGDPVFFRFKELTARPASVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSWLDEKE-ND 808 (930)
Q Consensus 730 ~~~~kl~~L~~~~~pi~~R~~e~~~rp~ai~~l~~~l~~~~~~~~~~~~~~~~it~~e~~~l~~~~~~~~~Wl~~~~-~~ 808 (930)
|+.--...+-.+..+|..++..-..|+=......+.-..++-++.+|.-.--|+.-+++....-.+.-...|.+... ..
T Consensus 338 EiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~Di~pysIs~~w~~~~ed~~~~~e 417 (727)
T KOG0103|consen 338 EIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDIVPYSISLRWVKQGEDGGSVTE 417 (727)
T ss_pred EEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCccccceecceecccceeEEEEeccccccCCCcee
Confidence 77777777888888888888888888888888888888888888888777677777776666555555556666311 22
Q ss_pred hhcCCCCCCCcccHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCC
Q 002363 809 QKKTSGFSKPAFTSEEVYEKILKLQDKINSINRIPKPKPKPEKKPKKNE 857 (930)
Q Consensus 809 Q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~kpkPk~~~~~~~~~~~ 857 (930)
+-+.-....++....-.+..--.|+..+..+...|.|+|+-..-.-..-
T Consensus 418 vF~~~~~~p~~K~lT~~Rk~~F~lea~yt~~~~lp~~~~kI~~~~i~~v 466 (727)
T KOG0103|consen 418 VFPKGHPSPSVKLLTFNRKGPFTLEAKYTKVNKLPYPKPKIEKWTITGV 466 (727)
T ss_pred eecCCCCCCCceEEEEEecCceEEEEEeccccccCCCCCceeeEEeccc
Confidence 2222223334455555566666777788888888888777655444443
No 148
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=59.74 E-value=26 Score=28.68 Aligned_cols=41 Identities=20% Similarity=0.219 Sum_probs=32.2
Q ss_pred HHHHHHhccCccccEEEeeCCCCCHHHHHHHHHHHHHcCCCe
Q 002363 150 VNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNV 191 (930)
Q Consensus 150 k~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~ 191 (930)
.+....+.... ....++.|+.++..+|..+.+.|+..||..
T Consensus 5 ~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 5 RQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred HHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 34444444333 468899999999999999999999999975
No 149
>PRK14878 UGMP family protein; Provisional
Probab=59.73 E-value=2.9e+02 Score=30.85 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=29.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHh---CCCccCCCC---Ccchhhhc
Q 002363 367 EIYAVELIGGGTRVPKLQAKLQEYL---GRTELDRHL---DADEAIVL 408 (930)
Q Consensus 367 ~I~~ViLvGG~sriP~V~~~l~~~f---g~~~i~~~~---n~deaVa~ 408 (930)
.+..|+|+||.....++++.|.+.+ |- ++..+. -.|.+++.
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~-~v~~~~~~~~~D~GimI 287 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMAEDRGA-KFYVVPPEYAGDNGAMI 287 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCC-EEECCCCCCCchHHHHH
Confidence 3668999999999999999999877 33 332222 34666666
No 150
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=59.57 E-value=16 Score=35.38 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=17.4
Q ss_pred CccEEEEEcCccceEEEEE
Q 002363 23 QSAVSSVDLGSEWLKVAVV 41 (930)
Q Consensus 23 ~~~vvGIDfGTt~s~va~~ 41 (930)
.+.++|||+|+..+.+|+.
T Consensus 3 ~~~iLalD~G~kriGvAv~ 21 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVS 21 (138)
T ss_pred CCcEEEEEeCCCEEEEEEe
Confidence 5679999999999999987
No 151
>PLN02596 hexokinase-like
Probab=58.12 E-value=18 Score=42.68 Aligned_cols=57 Identities=21% Similarity=0.160 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHcCC--CeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEe
Q 002363 175 AERKGLMQAAELAGM--NVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFS 236 (930)
Q Consensus 175 ~qR~al~~Aa~~AGl--~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~ 236 (930)
.-.+.+.+|.+.-|+ ++..|+|+.+|.-++.++.. +...+-+=+|-||=-+.+-+++
T Consensus 206 Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~-----~~~~iG~I~GTGtNacY~E~~~ 264 (490)
T PLN02596 206 ALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYN-----KDTVAAVTLGMGTNAAYVEPAQ 264 (490)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCC-----CCeEEEEEEecccceEEEEEcc
Confidence 334555666665566 57899999999877655432 2344434477776555554443
No 152
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.96 E-value=45 Score=35.43 Aligned_cols=94 Identities=20% Similarity=0.258 Sum_probs=55.9
Q ss_pred eeCCCCCHHHHHHHHHHHHHcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecccccccce
Q 002363 167 SVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKT 246 (930)
Q Consensus 167 tVPa~f~~~qR~al~~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~ 246 (930)
-+|.+|+. -|.+...| ..+|-. .-+++.--||+....++. .....||+|+|-|++..+++.
T Consensus 185 eiPe~FtR-Mraaa~sa-l~~~t~-av~mDskfaav~gal~dp----aa~palvVd~GngHttaalvd------------ 245 (342)
T COG4012 185 EIPESFTR-MRAAAMSA-LSAGTD-AVAMDSKFAAVMGALVDP----AADPALVVDYGNGHTTAALVD------------ 245 (342)
T ss_pred cCchhHHH-HHHHHHHH-HhcCce-EEEEcchhHhhhhcccCc----ccCceEEEEccCCceEEEEec------------
Confidence 36777764 23333333 234433 345665566655555543 234799999999999999983
Q ss_pred eccceEEEEEecCCCCcchHHHHHHHHHHHHHHHh
Q 002363 247 VSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFN 281 (930)
Q Consensus 247 ~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~~~f~ 281 (930)
.+.+.-+.......|.-..|...|.++..-++.
T Consensus 246 --edRI~gv~EHHT~~Lspekled~I~rf~~GeL~ 278 (342)
T COG4012 246 --EDRIVGVYEHHTIRLSPEKLEDQIIRFVEGELE 278 (342)
T ss_pred --CCeEEEEeecccccCCHHHHHHHHHHHHhcccc
Confidence 233333333444566667776666666665554
No 153
>PRK02224 chromosome segregation protein; Provisional
Probab=56.54 E-value=1.4e+02 Score=38.23 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhhcc
Q 002363 647 LSKEALVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFE 691 (930)
Q Consensus 647 ls~~~l~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iY~~r~~l~ 691 (930)
+++.+...+..++-.+..-+.......+++..++...-.++..+.
T Consensus 146 ~~p~~R~~ii~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (880)
T PRK02224 146 ATPSDRQDMIDDLLQLGKLEEYRERASDARLGVERVLSDQRGSLD 190 (880)
T ss_pred CCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888877666666555555655555555555555554
No 154
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=56.44 E-value=11 Score=40.06 Aligned_cols=17 Identities=18% Similarity=0.428 Sum_probs=15.9
Q ss_pred EEEEEcCccceEEEEEE
Q 002363 26 VSSVDLGSEWLKVAVVN 42 (930)
Q Consensus 26 vvGIDfGTt~s~va~~~ 42 (930)
++|||+|||++++++++
T Consensus 2 ~lgiDiGTts~K~~l~d 18 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFD 18 (245)
T ss_dssp EEEEEECSSEEEEEEEE
T ss_pred EEEEEEcccceEEEEEe
Confidence 79999999999999994
No 155
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=55.86 E-value=1.7e+02 Score=32.97 Aligned_cols=54 Identities=28% Similarity=0.307 Sum_probs=40.2
Q ss_pred CcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCC----CCCcchhhhcccHHHHhhh
Q 002363 364 KMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDR----HLDADEAIVLGASLLAANL 417 (930)
Q Consensus 364 ~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~----~~n~deaVa~GAa~~aa~l 417 (930)
-..+-+.++++||+.+.|.+.+.|...+.+..|.. .+++|.-=|.+-|+.|...
T Consensus 287 ~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 287 LQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred ccCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 34567789999999999999999999996544432 4667766666667766643
No 156
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=55.15 E-value=1.3e+02 Score=32.92 Aligned_cols=71 Identities=23% Similarity=0.162 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCC------ccCCCCCcchhhhcccHHHHh
Q 002363 344 EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT------ELDRHLDADEAIVLGASLLAA 415 (930)
Q Consensus 344 ~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~------~i~~~~n~deaVa~GAa~~aa 415 (930)
..++++....+-.+|...-. .-+.+.|+|-||.+..+.+.+.|++.+... ++....-.+.+.+.|||+.+.
T Consensus 211 ~~~~~~~~~~la~~l~~l~~-~~dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 211 QALINRSAQAIARLIADLKA-TLDCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhCCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 33444444444444443211 114567888887776666656666655421 222233456788999998754
No 157
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=53.73 E-value=27 Score=39.71 Aligned_cols=82 Identities=22% Similarity=0.235 Sum_probs=56.5
Q ss_pred EecHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCcCCccE-EEEEcCCCCcHHHHHHHHHHhCCCccC-CCCCcchhhhcc
Q 002363 333 SITRQKFEELCEDLWERS-LVPLREVLNYSGLKMDEIYA-VELIGGGTRVPKLQAKLQEYLGRTELD-RHLDADEAIVLG 409 (930)
Q Consensus 333 ~ItR~efe~l~~~~~~~i-~~~i~~~L~~a~~~~~~I~~-ViLvGG~sriP~V~~~l~~~fg~~~i~-~~~n~deaVa~G 409 (930)
.-.+.++-..++..++++ ...+..++++.+ ++. |.|.||....-..-..|.+..+-+.+. .+.-.|+-+++|
T Consensus 132 ~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiG 206 (360)
T PF02543_consen 132 TQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIG 206 (360)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHH
Confidence 456777777777777665 456667777666 345 999999998888888888775544443 445669999999
Q ss_pred cHHHHhhhcC
Q 002363 410 ASLLAANLSD 419 (930)
Q Consensus 410 Aa~~aa~ls~ 419 (930)
||+++...-.
T Consensus 207 aA~~~~~~~~ 216 (360)
T PF02543_consen 207 AALYAWHELG 216 (360)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999986443
No 158
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=53.06 E-value=5e+02 Score=31.55 Aligned_cols=157 Identities=19% Similarity=0.232 Sum_probs=79.8
Q ss_pred HhHHhHHHHHHhhccCcccccccCCHHHHHHHHHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHhccchHHHhHHhh-
Q 002363 677 NNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTD---GEDATAKEFQERLDVLKAIGDPVFFRFKEL- 752 (930)
Q Consensus 677 N~LEs~iY~~r~~l~~~~~~~~~~~~~er~~l~~~l~e~~~WL~~~---g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~- 752 (930)
..|+..-+-+|.....+-.|....-+.+...+.+.+.++..=|..- ...+..+.+.++++.|.+....=..-....
T Consensus 230 ~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~ve 309 (569)
T PRK04778 230 DQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVE 309 (569)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666766655433666667889999999999988777542 112233344444444443322211111111
Q ss_pred ---hcchHHHHHHHHHHHHHHHHHhccccCCCCCChhhhHH---HHHhHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHH
Q 002363 753 ---TARPASVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDE---VLKDSETFKSWLDEKENDQKKTSGFSKPAFTSEEVY 826 (930)
Q Consensus 753 ---~~rp~ai~~l~~~l~~~~~~~~~~~~~~~~it~~e~~~---l~~~~~~~~~Wl~~~~~~Q~~~~~~~dP~~~~~di~ 826 (930)
..-+..+..++.....+...+......| ++++.++.. +...+++...++..... .......| .+++.
T Consensus 310 k~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY-~l~~~e~~~~~~lekeL~~Le~~~~~~~~---~i~~~~~~---ysel~ 382 (569)
T PRK04778 310 KNSDTLPDFLEHAKEQNKELKEEIDRVKQSY-TLNESELESVRQLEKQLESLEKQYDEITE---RIAEQEIA---YSELQ 382 (569)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc-ccCchhHHHHHHHHHHHHHHHHHHHHHHH---HHHcCCCC---HHHHH
Confidence 1112333333333333333344344444 556665554 45556666666664433 33334444 46666
Q ss_pred HHHHHHHHHHHhhh
Q 002363 827 EKILKLQDKINSIN 840 (930)
Q Consensus 827 ~k~~~l~~~~~~l~ 840 (930)
.++..+...+..+.
T Consensus 383 e~leel~e~leeie 396 (569)
T PRK04778 383 EELEEILKQLEEIE 396 (569)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655543
No 159
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=52.97 E-value=61 Score=39.75 Aligned_cols=64 Identities=11% Similarity=0.145 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCChhhhHHHHHhHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHHHhh
Q 002363 760 EHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSWLDEKENDQKKTSGFSKPAFTSEEVYEKILKLQDKINSI 839 (930)
Q Consensus 760 ~~l~~~l~~~~~~~~~~~~~~~~it~~e~~~l~~~~~~~~~Wl~~~~~~Q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l 839 (930)
..+...+..++..+.. ....++.++++.+...+++++.||+.. ...+++.+++.|+..+..+
T Consensus 534 ~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~l~~~---------------d~~~~~~~~~~l~~~~~~~ 595 (616)
T PRK05183 534 VEAERVLEALQAALAA---DGDLLSAAERAAIDAAMAALREVAQGD---------------DADAIEAAIKALDKATQEF 595 (616)
T ss_pred HHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHHHH
Confidence 4455566666666543 125689999999999999999999741 2368899999999999888
Q ss_pred hc
Q 002363 840 NR 841 (930)
Q Consensus 840 ~~ 841 (930)
..
T Consensus 596 ~~ 597 (616)
T PRK05183 596 AA 597 (616)
T ss_pred HH
Confidence 85
No 160
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=51.95 E-value=2.2e+02 Score=36.54 Aligned_cols=47 Identities=15% Similarity=0.331 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHhhccCcccccccCCHHHHHHHHHHH
Q 002363 661 ELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKL 712 (930)
Q Consensus 661 ~~~~~D~~~~~~~eakN~LEs~iY~~r~~l~~~~~~~~~~~~~er~~l~~~l 712 (930)
.+.+..+-+.+.+++.-.|+.+|-.+|+.|..+. .++++.+.+-+.+
T Consensus 1455 ~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~-----adp~si~~vA~~v 1501 (1758)
T KOG0994|consen 1455 ALEQANASRSQMEESNRELRNLIQQVRDFLTQPD-----ADPDSIEEVAEEV 1501 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHH
Confidence 3444555555667777889999999999997542 4565555554444
No 161
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=51.42 E-value=10 Score=42.00 Aligned_cols=53 Identities=25% Similarity=0.339 Sum_probs=32.4
Q ss_pred ecHHHHHHHHHHHHHH----HHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCC
Q 002363 334 ITRQKFEELCEDLWER----SLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT 394 (930)
Q Consensus 334 ItR~efe~l~~~~~~~----i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~ 394 (930)
++.++.+++..-+++. +.+.|..++.+.|+.+ +..||++ |++-..+.+.+|..
T Consensus 245 ~~~~~~~~~A~~i~~~~~~~m~~ai~~v~~~~G~Dp------v~~gGaG--~~~a~~lA~~lg~~ 301 (318)
T TIGR03123 245 LGEEDVRNLAKYYYEAQLEQLTEAIEEVLERYGLKT------VVAAGAG--EFLAKEAAARLGRE 301 (318)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------eEEecch--HHHHHHHHHHcCCC
Confidence 4445566666655554 4455555555555543 5556665 88888888888754
No 162
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=51.07 E-value=20 Score=44.50 Aligned_cols=49 Identities=29% Similarity=0.316 Sum_probs=38.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhCCC--ccCCC---CCcchhhhcccHHHHh
Q 002363 367 EIYAVELIGGGTRVPKLQAKLQEYLGRT--ELDRH---LDADEAIVLGASLLAA 415 (930)
Q Consensus 367 ~I~~ViLvGG~sriP~V~~~l~~~fg~~--~i~~~---~n~deaVa~GAa~~aa 415 (930)
.++.|+|+||.....++.+.|.+.++.. ++..+ .-.|.+++.|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999887532 22222 3458899999998875
No 163
>PRK13410 molecular chaperone DnaK; Provisional
Probab=50.41 E-value=61 Score=40.12 Aligned_cols=70 Identities=16% Similarity=0.256 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHhccc-cCCCCCChhhhHHHHHhHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHH
Q 002363 757 ASVEHAQKYLGQLQQIVNDWE-TNKPWLPKDRTDEVLKDSETFKSWLDEKENDQKKTSGFSKPAFTSEEVYEKILKLQDK 835 (930)
Q Consensus 757 ~ai~~l~~~l~~~~~~~~~~~-~~~~~it~~e~~~l~~~~~~~~~Wl~~~~~~Q~~~~~~~dP~~~~~di~~k~~~l~~~ 835 (930)
++-..+..++..++..+.... .-.+.++++++..+...+++++.||.+. + ..+++.+...+...
T Consensus 529 e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~-----------~----~~~~~~~~~~~~~~ 593 (668)
T PRK13410 529 EKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQD-----------D----DRELDLAVADLQEA 593 (668)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcC-----------C----HHHHHHHHHHHHHH
Confidence 455667777777777775432 2346789999999999999999999852 1 14666667777776
Q ss_pred HHhhhc
Q 002363 836 INSINR 841 (930)
Q Consensus 836 ~~~l~~ 841 (930)
+..+..
T Consensus 594 l~~~~~ 599 (668)
T PRK13410 594 LYGLNR 599 (668)
T ss_pred HHHHHH
Confidence 666664
No 164
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=50.17 E-value=1.3e+02 Score=33.26 Aligned_cols=98 Identities=13% Similarity=0.126 Sum_probs=59.8
Q ss_pred cEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEEec---hhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEEEEeecc
Q 002363 163 DFVISVPPYFGQAERKGLMQAAELAGMNVLSLVN---EHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYN 239 (930)
Q Consensus 163 ~~VItVPa~f~~~qR~al~~Aa~~AGl~~l~Li~---EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~ 239 (930)
...+|-|.-=.+.-|.-+....-. -++|..|.- .-.|.|+.|.... ..+..-.=+|+|-|-|-|-+-.+.
T Consensus 108 ~fLlteppln~penreytaeImfE-sfnvpglyiAVqavLALaaswts~~-v~er~ltG~VidsGdgvThvipva----- 180 (415)
T KOG0678|consen 108 YFLLTEPPLNQPENREYTAEIMFE-SFNVPGLYIAVQAVLALAASWTSRQ-VGERFLTGIVIDSGDGVTHVIPVA----- 180 (415)
T ss_pred eEEecCCCCCCchhhHHHHHhhhh-hccCchHHHHHHHHHHHHHHHHHhh-hhhheeeeEEEecCCCeeEEEEee-----
Confidence 467888888777778776655322 355554432 2223333343322 112234558999999988777662
Q ss_pred cccccceeccceEEEEEecCCCCcchHHHHHHHHHHHH
Q 002363 240 AKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFA 277 (930)
Q Consensus 240 ~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~ 277 (930)
. .+.+.++-....+.|++++.-+...+.
T Consensus 181 ---------E-gyVigScik~iPiagrdiT~fiQ~llR 208 (415)
T KOG0678|consen 181 ---------E-GYVIGSCIKHIPIAGRDITYFIQQLLR 208 (415)
T ss_pred ---------c-ceEEeeeeccccccCCchhHHHHHHhh
Confidence 2 234455455678999999988877764
No 165
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.23 E-value=3.1e+02 Score=28.12 Aligned_cols=119 Identities=11% Similarity=0.159 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhccchHHHhHHhhh---cchHHHHHHHHHHHHHHHHHhccccCCCCCChhhhHHHHHhHHHHHHHHHH
Q 002363 728 AKEFQERLDVLKAIGDPVFFRFKELT---ARPASVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSWLDE 804 (930)
Q Consensus 728 ~~~~~~kl~~L~~~~~pi~~R~~e~~---~rp~ai~~l~~~l~~~~~~~~~~~~~~~~it~~e~~~l~~~~~~~~~Wl~~ 804 (930)
+.-|++.|..+.....-|.+...-.+ .--+.+..++.....++.... .++-+.+.++.+.|.+-+.--++
T Consensus 70 KK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~-------~mDiDkVdd~MdeI~eQqe~a~e 142 (221)
T KOG1656|consen 70 KKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHK-------NMDIDKVDDLMDEIAEQQEVAEE 142 (221)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHh-------ccChhHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666655432221 122233333333333333333 33444588888888887776666
Q ss_pred HHHHhhcCCCCCCCcccHHHHHHHHHHHHH--HHHhhhcCCCCCCCCCCCCC
Q 002363 805 KENDQKKTSGFSKPAFTSEEVYEKILKLQD--KINSINRIPKPKPKPEKKPK 854 (930)
Q Consensus 805 ~~~~Q~~~~~~~dP~~~~~di~~k~~~l~~--~~~~l~~kpkPk~~~~~~~~ 854 (930)
...+-+ .|.--.-.|.-.|+...+..|+. .=+.++..+.|.|+-|..|.
T Consensus 143 IseAiS-~Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~~~~p~v~LP~vPs 193 (221)
T KOG1656|consen 143 ISEAIS-APVGFGADFDEDELMAELDELEQEELDKELLDIRAPPVPLPDVPS 193 (221)
T ss_pred HHHHHh-CccccccccCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCc
Confidence 555544 44432122889999999999994 55667777777776665553
No 166
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=49.21 E-value=32 Score=41.38 Aligned_cols=69 Identities=19% Similarity=0.252 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCChhhhHHHHHhHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHHHhh
Q 002363 760 EHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSWLDEKENDQKKTSGFSKPAFTSEEVYEKILKLQDKINSI 839 (930)
Q Consensus 760 ~~l~~~l~~~~~~~~~~~~~~~~it~~e~~~l~~~~~~~~~Wl~~~~~~Q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l 839 (930)
..|..++-.++..++... ..|++++..++.+.|+++..||+..... . ..+++.|.+.|+..|+++
T Consensus 544 ~~le~~~f~~~~~~~~~~---~~i~~~~~~~~~~~~~~~i~wl~~~~~~----------~--~~e~e~k~~el~~~~~p~ 608 (620)
T KOG0101|consen 544 NSLESYAFNMKATVEDEK---GKINEEDKQKILDKCNEVINWLDKNQLA----------E--KEEFEHKQKELELVCNPI 608 (620)
T ss_pred hhHHHHHHhhhhhhhhhc---cccChhhhhhHHHHHHHHHHHhhhcccc----------c--ccHHHHHHHHHHhhccHH
Confidence 344444445555554332 6789999999999999999999953321 1 578999999999999999
Q ss_pred hcCC
Q 002363 840 NRIP 843 (930)
Q Consensus 840 ~~kp 843 (930)
+.+-
T Consensus 609 ~~~~ 612 (620)
T KOG0101|consen 609 ISKL 612 (620)
T ss_pred HHhh
Confidence 8763
No 167
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=48.80 E-value=4.3e+02 Score=29.65 Aligned_cols=232 Identities=14% Similarity=0.102 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHhccCc---cccEEEeeCCCCCHHHHHHHHHHHHHcC-C-CeeEEechhhHHHHHhccccCCCCC
Q 002363 140 ELLAMVLSYAVNLVDTHAKLA---VKDFVISVPPYFGQAERKGLMQAAELAG-M-NVLSLVNEHSGAALQYGIDKDFSNE 214 (930)
Q Consensus 140 el~a~~L~~lk~~a~~~~~~~---~~~~VItVPa~f~~~qR~al~~Aa~~AG-l-~~l~Li~EptAAAl~y~~~~~~~~~ 214 (930)
+.-..-+..+.+.+-...+.. ..-+.+|+=+...-.-+--+.-|-..|+ + +++-=|+-..|=||.--+..+ .-
T Consensus 80 ~~Hr~ni~~~iqral~aa~~~p~dldaIAVT~gPGl~lsL~vGl~fA~glA~~l~kPlipVHHMeAHAL~~rl~~~--~v 157 (405)
T KOG2707|consen 80 LLHRENIPRLIQRALDAAGLSPKDLDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQKPLIPVHHMEAHALSIRLVDD--SV 157 (405)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceeEEEecCCCceeehhhhHHHHHHHHHhccCCccchhHHHHhHHHHHhccC--Cc
Confidence 334445556666665555544 4456778777776666666777766664 2 234456777787776544432 11
Q ss_pred CcEEEEEEcCCCceEEEEEEEeecccccccceeccceEEEEEecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCCcH
Q 002363 215 SRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSP 294 (930)
Q Consensus 215 ~~~vlv~D~GggT~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~~~f~~~~~~~~d~~~~~ 294 (930)
.--++.+=+-||++-+.+.+ ..+.+++++..-|.. =|+.||..= +++.-.. +..+...--
T Consensus 158 ~FPFl~lLvSGGH~llvla~-------------~~~~~~llg~TvDiA-pGe~lDK~a-----r~Lgl~~-~~e~~~~~g 217 (405)
T KOG2707|consen 158 RFPFLALLVSGGHTLLVLAN-------------GVGDHELLGQTVDIA-PGEALDKCA-----RRLGLLG-HPEDARSGG 217 (405)
T ss_pred CCceeeEeeeCCceEEEEec-------------cccceeeeecccccc-hHHHHHHHH-----HHhcCCC-Cccchhhhh
Confidence 23467777789999888873 256788888877744 356666432 2221110 000000001
Q ss_pred HHHHHHHHHHHHHhh-----hhcCCCcccEEEeecccCc---------ccEEEecHHHHHHHH-HHHHHHHHHHHHHHHH
Q 002363 295 KAMAKLKKQVKRTKE-----ILSANTMAPISVESLYVDI---------DFRSSITRQKFEELC-EDLWERSLVPLREVLN 359 (930)
Q Consensus 295 ~~~~kL~~~aek~K~-----~LS~~~~~~i~ie~l~~~~---------d~~~~ItR~efe~l~-~~~~~~i~~~i~~~L~ 359 (930)
++...+...+...++ =|-....+.++..++.... .-.....+.+|-.-+ .-++..|..-...+++
T Consensus 218 ~aie~la~~~s~~~~l~~piPL~~~~~~nFSFsglk~~~~~~i~k~~k~e~~~s~~~dfaa~lQ~tv~~Hi~~Kt~~ai~ 297 (405)
T KOG2707|consen 218 KAIEHLANRASADLHLKFPIPLKNVKKCNFSFSGLKTSYRRIIEKLEKNEETLSEIADFAASLQRTVFRHISSKTHRAIK 297 (405)
T ss_pred hHHHHHHhccCccccccCCCCccccccCCccHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111100000 0000001111111110000 000122233333222 1234444444455555
Q ss_pred HcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCC
Q 002363 360 YSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGR 393 (930)
Q Consensus 360 ~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~ 393 (930)
...+..+.....++.||-++..+|+.+|....+.
T Consensus 298 ~~~l~~~~~~~lV~SGGVAsN~yir~~le~l~~~ 331 (405)
T KOG2707|consen 298 SLLLQPKNVKQLVISGGVASNQYIRGALEKLSAA 331 (405)
T ss_pred HhhhcccCCceEEEcCCccchHHHHHHHHHHHHh
Confidence 5556667778999999999999999999987654
No 168
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=47.56 E-value=1.6e+02 Score=31.80 Aligned_cols=117 Identities=15% Similarity=0.168 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHhHHhhhcchHHHHHHHHHHHHHHHHHhccccCCCCCChh
Q 002363 707 SFVEKLDEAQEWLYTDGEDATAKEFQERLDVLKAIGDPVFFRFKELTARPASVEHAQKYLGQLQQIVNDWETNKPWLPKD 786 (930)
Q Consensus 707 ~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~ai~~l~~~l~~~~~~~~~~~~~~~~it~~ 786 (930)
.+..+++++-+-=-...+|+..+-=...|=++...++||-.-+-+.-.|-.|++.|....+++-+.+..++++...|+.+
T Consensus 254 s~lgK~~~IaEk~~~s~~Da~~d~KV~elye~~qrw~pi~stLP~~V~rl~al~~LHeqa~~Fa~~lthl~t~q~~i~~s 333 (371)
T KOG3958|consen 254 SVLGKVNEIAEKHKASVEDADTDSKVHELYETIQRWSPIASTLPELVQRLVALKQLHEQAMQFAQLLTHLDTTQQMIANS 333 (371)
T ss_pred HHHHHHHHHHHhhccccccchhhhhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433333333666666555566666778899999998999999999999998888888776554433222221
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHHHhhh
Q 002363 787 RTDEVLKDSETFKSWLDEKENDQKKTSGFSKPAFTSEEVYEKILKLQDKINSIN 840 (930)
Q Consensus 787 e~~~l~~~~~~~~~Wl~~~~~~Q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~ 840 (930)
+..-...+-.++.-+.+.+ .-|+.|+..++..+.+|-
T Consensus 334 -l~~n~ell~~vqtt~~qnl----------------~tV~~k~a~ie~rva~l~ 370 (371)
T KOG3958|consen 334 -LKDNTELLTQVQTTMRQNL----------------ATVEGKFASIEERVAKLG 370 (371)
T ss_pred -HhcchHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHhc
Confidence 1111222333333333322 356777778887777664
No 169
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=47.18 E-value=70 Score=31.97 Aligned_cols=74 Identities=14% Similarity=0.256 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhccchHHHhHHhhhcch------HHHHHHHHHHHHHHHHHhccccCCCCCChhhhHHHHHhHHHHHHHHH
Q 002363 730 EFQERLDVLKAIGDPVFFRFKELTARP------ASVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSWLD 803 (930)
Q Consensus 730 ~~~~kl~~L~~~~~pi~~R~~e~~~rp------~ai~~l~~~l~~~~~~~~~~~~~~~~it~~e~~~l~~~~~~~~~Wl~ 803 (930)
++++.+.+|+.-..-+...+......| ..++.+..-+..+...+..+......++++++..+..........|.
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w~ 162 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEWK 162 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444 45666667777777777766666667999999999888877666554
No 170
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=46.38 E-value=3.5e+02 Score=28.63 Aligned_cols=44 Identities=20% Similarity=0.179 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhHHHHHHhhc
Q 002363 647 LSKEALVDAEAK-LEELDKKDADRRRTAELKNNLEGYIYATKEKF 690 (930)
Q Consensus 647 ls~~~l~~~~~~-l~~~~~~D~~~~~~~eakN~LEs~iY~~r~~l 690 (930)
|+-..+++...+ -.++..+.+.-.+...-.|.-...+.+--.+|
T Consensus 71 l~~~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI 115 (254)
T KOG2196|consen 71 LTYKTLEELINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKI 115 (254)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHH
Confidence 555566665554 23445556666666666777666655544444
No 171
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=46.26 E-value=3.7e+02 Score=28.16 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=46.3
Q ss_pred EecHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCC--ccCCCCCcchhhhcc
Q 002363 333 SITRQKFE-ELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT--ELDRHLDADEAIVLG 409 (930)
Q Consensus 333 ~ItR~efe-~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~--~i~~~~n~deaVa~G 409 (930)
+.|.+++- .|-+-+|.-+.+.-++++...+ -+.|++|||-...-.+|++...+.... ++ ..-+-..|+-.|
T Consensus 224 ~~t~~DLCySLQEtvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~-faTDeRfCIDNG 297 (336)
T KOG2708|consen 224 EVTKEDLCYSLQETVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKL-FATDERFCIDNG 297 (336)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCce-EecccceeeeCc
Confidence 44555443 2223355556666677776654 357999999999999999998877542 22 222334466666
Q ss_pred cHH
Q 002363 410 ASL 412 (930)
Q Consensus 410 Aa~ 412 (930)
+.+
T Consensus 298 ~MI 300 (336)
T KOG2708|consen 298 VMI 300 (336)
T ss_pred hHH
Confidence 654
No 172
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=46.13 E-value=1.1e+02 Score=30.21 Aligned_cols=76 Identities=11% Similarity=0.188 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhccchHHHhHHhhh------cchHHHHHHHHHHHHHHHHHhccccCCCCCChhhhHHHHHhHHHHHHH
Q 002363 728 AKEFQERLDVLKAIGDPVFFRFKELT------ARPASVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSW 801 (930)
Q Consensus 728 ~~~~~~kl~~L~~~~~pi~~R~~e~~------~rp~ai~~l~~~l~~~~~~~~~~~~~~~~it~~e~~~l~~~~~~~~~W 801 (930)
...|.+|++.|++.+.-+..-+.+.. ...+.+..|++-....+..+.++.....|+|.+++..+.+..+....-
T Consensus 88 i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~ 167 (201)
T KOG4603|consen 88 IVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKE 167 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 45567777777777766665555543 223455566666666677777777778899999999999888776554
Q ss_pred HH
Q 002363 802 LD 803 (930)
Q Consensus 802 l~ 803 (930)
|.
T Consensus 168 wr 169 (201)
T KOG4603|consen 168 WR 169 (201)
T ss_pred HH
Confidence 33
No 173
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=45.01 E-value=1.7e+02 Score=31.99 Aligned_cols=45 Identities=24% Similarity=0.186 Sum_probs=29.5
Q ss_pred HcCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCCceEEEEE
Q 002363 186 LAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALV 233 (930)
Q Consensus 186 ~AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv 233 (930)
..|+++ .+-|+..|||++-..... ....+.++++.+|.| +-.+++
T Consensus 95 ~~~~pV-~ieNDa~aaalaE~~~g~-~~~~~~~~~l~~gtG-iG~giv 139 (303)
T PRK13310 95 RLGRDV-RLDNDANCFALSEAWDDE-FTQYPLVMGLILGTG-VGGGLV 139 (303)
T ss_pred HHCCCe-EEeccHhHHHHHHhhhcc-ccCCCcEEEEEecCc-eEEEEE
Confidence 348875 699999999987433211 123468899999876 455555
No 174
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=44.77 E-value=18 Score=35.08 Aligned_cols=18 Identities=28% Similarity=0.483 Sum_probs=16.8
Q ss_pred ccEEEEEcCccceEEEEE
Q 002363 24 SAVSSVDLGSEWLKVAVV 41 (930)
Q Consensus 24 ~~vvGIDfGTt~s~va~~ 41 (930)
+.++|||||+-.+.||+.
T Consensus 2 ~~ilalD~G~KrIGvA~s 19 (141)
T COG0816 2 MRILALDVGTKRIGVAVS 19 (141)
T ss_pred ceEEEEecCCceEEEEEe
Confidence 579999999999999997
No 175
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=44.48 E-value=4.9e+02 Score=29.03 Aligned_cols=20 Identities=0% Similarity=0.028 Sum_probs=13.3
Q ss_pred CCCCChhhhHHHHHhHHHHH
Q 002363 780 KPWLPKDRTDEVLKDSETFK 799 (930)
Q Consensus 780 ~~~it~~e~~~l~~~~~~~~ 799 (930)
...+|..|+..|...++..+
T Consensus 270 ~r~~t~~Ev~~Lk~~~~~Le 289 (325)
T PF08317_consen 270 CRGWTRSEVKRLKAKVDALE 289 (325)
T ss_pred hcCCCHHHHHHHHHHHHHHH
Confidence 44567777887777765554
No 176
>PRK03918 chromosome segregation protein; Provisional
Probab=43.75 E-value=4.1e+02 Score=34.05 Aligned_cols=12 Identities=33% Similarity=0.570 Sum_probs=5.9
Q ss_pred EEEc--CCCCcHHH
Q 002363 372 ELIG--GGTRVPKL 383 (930)
Q Consensus 372 iLvG--G~sriP~V 383 (930)
+++| |++..-.+
T Consensus 27 ~i~G~nG~GKStil 40 (880)
T PRK03918 27 LIIGQNGSGKSSIL 40 (880)
T ss_pred EEEcCCCCCHHHHH
Confidence 4555 44554444
No 177
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=43.72 E-value=18 Score=43.09 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.4
Q ss_pred CCccEEEEEcCccceEEEEEE
Q 002363 22 SQSAVSSVDLGSEWLKVAVVN 42 (930)
Q Consensus 22 ~~~~vvGIDfGTt~s~va~~~ 42 (930)
....++|||+|||++++.+++
T Consensus 2 ~~~~~lgIDiGTt~~Kavl~d 22 (502)
T COG1070 2 MMKYVLGIDIGTTSVKAVLFD 22 (502)
T ss_pred CccEEEEEEcCCCcEEEEEEe
Confidence 356799999999999999993
No 178
>PRK07058 acetate kinase; Provisional
Probab=43.19 E-value=1.8e+02 Score=33.32 Aligned_cols=47 Identities=17% Similarity=0.093 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCC-CcHHHHHHHHHHhC
Q 002363 342 LCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGT-RVPKLQAKLQEYLG 392 (930)
Q Consensus 342 l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~s-riP~V~~~l~~~fg 392 (930)
.++-++.|+.+.|-...... ..||+|+++||-+ ..+.|++.|.+.+.
T Consensus 297 A~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 297 ALDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 33446666666666555433 3699999999999 99999999998775
No 179
>PLN02920 pantothenate kinase 1
Probab=42.57 E-value=95 Score=35.38 Aligned_cols=50 Identities=12% Similarity=-0.095 Sum_probs=34.5
Q ss_pred CCccEEEEEcCCCCcH-HHHHHHHH---Hh--CCCccCCCCCcchhhhcccHHHHh
Q 002363 366 DEIYAVELIGGGTRVP-KLQAKLQE---YL--GRTELDRHLDADEAIVLGASLLAA 415 (930)
Q Consensus 366 ~~I~~ViLvGG~sriP-~V~~~l~~---~f--g~~~i~~~~n~deaVa~GAa~~aa 415 (930)
..++.|+++|+..|.+ ..++.|.- +. +..+....-+.--.-|+||++...
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~ 351 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE 351 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence 4788999999999998 77765543 22 222444555666788999986543
No 180
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=42.56 E-value=1.3e+02 Score=36.74 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhccccCCCCCChhhhHHHHHhHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHHHhhh
Q 002363 761 HAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSWLDEKENDQKKTSGFSKPAFTSEEVYEKILKLQDKINSIN 840 (930)
Q Consensus 761 ~l~~~l~~~~~~~~~~~~~~~~it~~e~~~l~~~~~~~~~Wl~~~~~~Q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~ 840 (930)
.+...+..+++.+.. ....++++++..+...+++++.||.+. ...+++.+.+.|+..+..+.
T Consensus 519 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~l~~~---------------~~~~~~~~~~~l~~~~~~~~ 580 (599)
T TIGR01991 519 EAERILEALQAALAA---DGDLLSEDERAAIDAAMEALQKALQGD---------------DADAIKAAIEALEEATDNFA 580 (599)
T ss_pred HHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHHHHH
Confidence 445555555555532 123789999999999999999999742 12688888999998888877
Q ss_pred c
Q 002363 841 R 841 (930)
Q Consensus 841 ~ 841 (930)
.
T Consensus 581 ~ 581 (599)
T TIGR01991 581 A 581 (599)
T ss_pred H
Confidence 4
No 181
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=42.46 E-value=19 Score=43.16 Aligned_cols=18 Identities=11% Similarity=0.366 Sum_probs=16.7
Q ss_pred cEEEEEcCccceEEEEEE
Q 002363 25 AVSSVDLGSEWLKVAVVN 42 (930)
Q Consensus 25 ~vvGIDfGTt~s~va~~~ 42 (930)
.++|||+|||++++++++
T Consensus 4 ~~lgID~GTts~Ka~l~d 21 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFD 21 (520)
T ss_pred EEEEEecCCCceEEEEEC
Confidence 699999999999999994
No 182
>PRK10331 L-fuculokinase; Provisional
Probab=42.23 E-value=19 Score=42.57 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=16.5
Q ss_pred cEEEEEcCccceEEEEEE
Q 002363 25 AVSSVDLGSEWLKVAVVN 42 (930)
Q Consensus 25 ~vvGIDfGTt~s~va~~~ 42 (930)
.++|||+|||++++++++
T Consensus 3 ~~lgID~GTt~~Ka~l~d 20 (470)
T PRK10331 3 VILVLDCGATNVRAIAVD 20 (470)
T ss_pred eEEEEecCCCceEEEEEc
Confidence 589999999999999993
No 183
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=42.19 E-value=27 Score=34.39 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=15.4
Q ss_pred EEEEEcCccceEEEEE
Q 002363 26 VSSVDLGSEWLKVAVV 41 (930)
Q Consensus 26 vvGIDfGTt~s~va~~ 41 (930)
|+|||.|++++..|++
T Consensus 2 ILGIDPGl~~~G~av~ 17 (154)
T cd00529 2 ILGIDPGSRNTGYGVI 17 (154)
T ss_pred EEEEccCcCceEEEEE
Confidence 8999999999999998
No 184
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=42.05 E-value=95 Score=33.39 Aligned_cols=53 Identities=25% Similarity=0.409 Sum_probs=34.0
Q ss_pred CccEEEEEcCCCCcHH----HHHHHHHHhCCC-------ccCCCCCcchhhhcccHHHHhhhcCC
Q 002363 367 EIYAVELIGGGTRVPK----LQAKLQEYLGRT-------ELDRHLDADEAIVLGASLLAANLSDG 420 (930)
Q Consensus 367 ~I~~ViLvGG~sriP~----V~~~l~~~fg~~-------~i~~~~n~deaVa~GAa~~aa~ls~~ 420 (930)
.-+.|+|.|-.+|+|. |++.|+++|..- .+....... -.|.|||+.|..+++.
T Consensus 273 ~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~K-eaA~GaAiiAnaiAGG 336 (374)
T COG2441 273 YPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAK-EAAEGAAIIANAIAGG 336 (374)
T ss_pred CcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhh-hhccchhhhhhhhcch
Confidence 4578999999999874 566666665431 111112223 3578999988877764
No 185
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=41.76 E-value=66 Score=26.26 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=26.4
Q ss_pred cEEEeeCCCCCHHHHHHHHHHHHHcCCCe
Q 002363 163 DFVISVPPYFGQAERKGLMQAAELAGMNV 191 (930)
Q Consensus 163 ~~VItVPa~f~~~qR~al~~Aa~~AGl~~ 191 (930)
...+..|+.++..||..+.+.|+..||.-
T Consensus 17 ~~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 17 ATELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred cCcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 36889999999999999999999999864
No 186
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=41.52 E-value=1.8e+02 Score=28.58 Aligned_cols=66 Identities=15% Similarity=0.092 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHcCCC-----cCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHH
Q 002363 347 WERSLVPLREVLNYSGLK-----MDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLA 414 (930)
Q Consensus 347 ~~~i~~~i~~~L~~a~~~-----~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~a 414 (930)
+..+...+..++...+++ +..+...+.-=|...=--|+.+|+..++-... +.+.|+|=|.+.|+..
T Consensus 80 l~~~~Gvi~~~~~~~~i~v~e~~P~~vKk~~tG~G~A~KeqV~~mv~~~l~~~~~--~~~~d~aDAlaiA~~~ 150 (154)
T cd00529 80 LGQARGALILALANRNLPVFEYTPNQVKKAVTGYGKADKDQVQHMVKRLLNLSEI--PKPDDAADALAVAITH 150 (154)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccCeeEEEEECCCCCCHHHHHHHHHHHhCCCCC--CCCCCHHHHHHHHHHH
Confidence 344566666777776655 44454433322334445688999999986432 2334555555555443
No 187
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=40.23 E-value=6.4e+02 Score=32.61 Aligned_cols=114 Identities=14% Similarity=0.170 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHhccchHHHhHHhhhcc-hHHH---HHHHHHHHHHHHHHhccccCCCCCChhhhHHHHHhHHHH---
Q 002363 726 ATAKEFQERLDVLKAIGDPVFFRFKELTAR-PASV---EHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETF--- 798 (930)
Q Consensus 726 a~~~~~~~kl~~L~~~~~pi~~R~~e~~~r-p~ai---~~l~~~l~~~~~~~~~~~~~~~~it~~e~~~l~~~~~~~--- 798 (930)
+..+..++++..++....|+..-+.....+ -..+ ..+..-|......+.+...-.-|+.+-.+. ....+...
T Consensus 755 ~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~e~~~~HyE~~~K~-~l~~l~~~E~~ 833 (1074)
T KOG0250|consen 755 APLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRSAEDEKRHYEDKLKS-RLEELKQKEVE 833 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHH-hhHHHHHHHHH
Confidence 455666667777776666666555444322 1111 222222222222222222233454333221 33333333
Q ss_pred HHHHHHHHHHhhcCCCCCCCcc---------cHHHHHHHHHHHHHHHHhhh
Q 002363 799 KSWLDEKENDQKKTSGFSKPAF---------TSEEVYEKILKLQDKINSIN 840 (930)
Q Consensus 799 ~~Wl~~~~~~Q~~~~~~~dP~~---------~~~di~~k~~~l~~~~~~l~ 840 (930)
..-+.+..+.+...+.+..|-. ++++|...+..|.+.++.+-
T Consensus 834 ~~~~e~~~~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~i~~~e 884 (1074)
T KOG0250|consen 834 KVNLEEPRAEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQIQMCE 884 (1074)
T ss_pred HHhhhcchhhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 2334555666666677777777 47999999999998887653
No 188
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=39.98 E-value=5.7e+02 Score=28.45 Aligned_cols=36 Identities=3% Similarity=0.060 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhccccCCCCCChhhhHHHHHhHHHHHH
Q 002363 761 HAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKS 800 (930)
Q Consensus 761 ~l~~~l~~~~~~~~~~~~~~~~it~~e~~~l~~~~~~~~~ 800 (930)
.++..|+.+...++ ...++|..|+..|...++..+.
T Consensus 250 e~~~~I~~ae~~~~----~~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 250 ELNTEIAEAEKKLE----QCRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHHHH
Confidence 33444444444443 4567788888888777665543
No 189
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=39.82 E-value=28 Score=41.55 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=16.5
Q ss_pred cEEEEEcCccceEEEEEE
Q 002363 25 AVSSVDLGSEWLKVAVVN 42 (930)
Q Consensus 25 ~vvGIDfGTt~s~va~~~ 42 (930)
.++|||+|||++++++++
T Consensus 3 ~~lgiDiGTts~Ka~l~d 20 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFD 20 (504)
T ss_pred EEEEEecCCCceEEEEEC
Confidence 589999999999999993
No 190
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=39.75 E-value=81 Score=32.77 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=21.3
Q ss_pred CCCcEEEEEEcCCCceEEEEEEEe
Q 002363 213 NESRHVVFYDMGATTTYAALVYFS 236 (930)
Q Consensus 213 ~~~~~vlv~D~GggT~dvsvv~~~ 236 (930)
.+...+|++|+||.++-|++|++.
T Consensus 60 ~E~G~~LalDlGGTnlRv~~V~L~ 83 (206)
T PF00349_consen 60 NEKGDFLALDLGGTNLRVALVELS 83 (206)
T ss_dssp TTEEEEEEEEESSSSEEEEEEEEE
T ss_pred CCCceEEEEeecCcEEEEEEEEEc
Confidence 345789999999999999999986
No 191
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=39.20 E-value=36 Score=31.78 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCc--HHHHHHHHHHhCCC
Q 002363 348 ERSLVPLREVLNYSGLKMDEIYAVELIGGGTRV--PKLQAKLQEYLGRT 394 (930)
Q Consensus 348 ~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sri--P~V~~~l~~~fg~~ 394 (930)
..+...|+++|+++++.+++|+.|+..|-++.. +.=.+.|.+.|+..
T Consensus 25 ~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~~ 73 (119)
T PF02801_consen 25 AALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGDS 73 (119)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhccc
Confidence 345667899999999999999999999988775 34445677888753
No 192
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=39.15 E-value=21 Score=42.05 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=16.4
Q ss_pred cEEEEEcCccceEEEEEE
Q 002363 25 AVSSVDLGSEWLKVAVVN 42 (930)
Q Consensus 25 ~vvGIDfGTt~s~va~~~ 42 (930)
.++|||+||+++++++++
T Consensus 2 ~ilgiD~GTss~K~~l~d 19 (465)
T TIGR02628 2 VILVLDCGATNLRAIAIN 19 (465)
T ss_pred eEEEEecCCCcEEEEEEc
Confidence 389999999999999994
No 193
>PRK15027 xylulokinase; Provisional
Probab=38.98 E-value=20 Score=42.46 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=15.8
Q ss_pred EEEEEcCccceEEEEEE
Q 002363 26 VSSVDLGSEWLKVAVVN 42 (930)
Q Consensus 26 vvGIDfGTt~s~va~~~ 42 (930)
++|||+|||++++++++
T Consensus 2 ~lgID~GTts~Ka~l~d 18 (484)
T PRK15027 2 YIGIDLGTSGVKVILLN 18 (484)
T ss_pred EEEEEecccceEEEEEc
Confidence 79999999999999994
No 194
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=38.63 E-value=66 Score=25.98 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=30.4
Q ss_pred HHHHHHHHhccCccccEEEeeCCCCCHHHHHHHHHHHHHcCCCe
Q 002363 148 YAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNV 191 (930)
Q Consensus 148 ~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~ 191 (930)
.+++..+.++... .-.++.|+ ++..+|..+.+.|...||..
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 3444445554333 45779999 89999999999999999864
No 195
>PLN02377 3-ketoacyl-CoA synthase
Probab=38.40 E-value=65 Score=38.22 Aligned_cols=55 Identities=11% Similarity=0.041 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEE-EcCCCCcHHHHHHHHHHhCCC
Q 002363 340 EELCEDLWERSLVPLREVLNYSGLKMDEIYAVEL-IGGGTRVPKLQAKLQEYLGRT 394 (930)
Q Consensus 340 e~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViL-vGG~sriP~V~~~l~~~fg~~ 394 (930)
+...++...-+...++++|+++|+++++|+.|+. +.|....|.+-.+|.+.+|-.
T Consensus 166 ~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr 221 (502)
T PLN02377 166 AAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLR 221 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCC
Confidence 3333444455677888999999999999999977 444446899999999999864
No 196
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=38.08 E-value=30 Score=32.45 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHHHHHHHHHHHHcC---CCeeE---------Eechh-hHHHHH
Q 002363 142 LAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAG---MNVLS---------LVNEH-SGAALQ 204 (930)
Q Consensus 142 ~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~qR~al~~Aa~~AG---l~~l~---------Li~Ep-tAAAl~ 204 (930)
++..|+...+.|+...+.++..+.++++. ...+-+.++++.++ +++.. ++..| -|+|++
T Consensus 48 i~~~i~~a~~~AE~~~k~~i~~v~v~~g~----s~l~~i~~~~~~~~~~~v~v~~~~~~~~~~~~~~~p~~Asa~g 119 (120)
T PF14450_consen 48 ISKAIKIAIEEAERLAKCEIGSVYVSIGG----SKLQNIEELIEKCGGMPVRVAGPNIVEGLPEIVLNPEYASAIG 119 (120)
T ss_dssp HHHHHT--HHHHHHH-HHHH--S--TTGG----GGSTTHHHHHHHHHTS-EEE--GGGSET-HHHHT-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCeeeEEEecCch----hHHHhHHHHHHHhCCCcEEEccccccCcchhhccCceeeEEEe
Confidence 44455556666776666666667766633 34445566666665 66666 77788 777764
No 197
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=37.89 E-value=2.4e+02 Score=32.48 Aligned_cols=47 Identities=13% Similarity=-0.008 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCC-CcHHHHHHHHHHhC
Q 002363 343 CEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGT-RVPKLQAKLQEYLG 392 (930)
Q Consensus 343 ~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~s-riP~V~~~l~~~fg 392 (930)
++-++.|+.+.|-...... ...||+|+++||-+ ..+.|++.|.+.+.
T Consensus 302 ~d~f~yri~k~Iga~~a~L---~g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 302 LDVFVYRLAKYIGSYAAAL---NGRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHh---cCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 3445666666665554432 13699999999999 99999999998775
No 198
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=37.72 E-value=23 Score=37.91 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=15.3
Q ss_pred EEEEEcCccceEEEEE
Q 002363 26 VSSVDLGSEWLKVAVV 41 (930)
Q Consensus 26 vvGIDfGTt~s~va~~ 41 (930)
++|||+||++++++++
T Consensus 2 ~lGIDiGtts~K~vl~ 17 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLM 17 (248)
T ss_pred EEEEEcChhheEEEEE
Confidence 7899999999999999
No 199
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=37.44 E-value=1.7e+02 Score=35.83 Aligned_cols=41 Identities=7% Similarity=0.091 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCChhhhHHHHHhHHHHHHHHH
Q 002363 760 EHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSWLD 803 (930)
Q Consensus 760 ~~l~~~l~~~~~~~~~~~~~~~~it~~e~~~l~~~~~~~~~Wl~ 803 (930)
.+++..+..++..+.. ...+++.++++.+...+++++.||+
T Consensus 512 ~~~~~~~~~~~~~~~~---~~~~l~~~~~~~i~~~~~~~~~~l~ 552 (595)
T PRK01433 512 IEAEALIFNIERAIAE---LTTLLSESEISIINSLLDNIKEAVH 552 (595)
T ss_pred HHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHh
Confidence 3455556666666643 2446788999999999999999996
No 200
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=37.17 E-value=1.1e+02 Score=30.40 Aligned_cols=88 Identities=22% Similarity=0.239 Sum_probs=50.3
Q ss_pred cHHHHHHHHHHHHHHHHHHhccCccccEEEeeCCCCCHHH----------------HHHHHHHHHHcCCCeeEEechhhH
Q 002363 137 SVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAE----------------RKGLMQAAELAGMNVLSLVNEHSG 200 (930)
Q Consensus 137 ~~eel~a~~L~~lk~~a~~~~~~~~~~~VItVPa~f~~~q----------------R~al~~Aa~~AGl~~l~Li~EptA 200 (930)
++++++..+...+.+.....- .. .+.|++|..+.... .+.|.+ ..++++ .+.|+..|
T Consensus 31 ~~~~~~~~l~~~i~~~~~~~~-~~--gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~~---~~~~pv-~i~Nd~~~ 103 (179)
T PF00480_consen 31 SPEELLDALAELIERLLADYG-RS--GIGISVPGIVDSEKGRIISSPNPGWENIPLKEELEE---RFGVPV-IIENDANA 103 (179)
T ss_dssp SHHHHHHHHHHHHHHHHHHHT-CE--EEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHHH---HHTSEE-EEEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhcc-cc--cEEEeccccCcCCCCeEEecCCCCcccCCHHHHhhc---ccceEE-EEecCCCc
Confidence 455666666665555544432 11 45555555443322 223332 346655 79999999
Q ss_pred HHHHhccccCCCCCCcEEEEEEcCCCceEEEEE
Q 002363 201 AALQYGIDKDFSNESRHVVFYDMGATTTYAALV 233 (930)
Q Consensus 201 AAl~y~~~~~~~~~~~~vlv~D~GggT~dvsvv 233 (930)
+|+++...... ...+.++++-+|.| +-.+++
T Consensus 104 ~a~ae~~~~~~-~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 104 AALAEYWFGAA-KDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHHHHHHHSTT-TTTSSEEEEEESSS-EEEEEE
T ss_pred ceeehhhcCcc-CCcceEEEEEeecC-CCccee
Confidence 99986553321 23367888888876 566665
No 201
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.93 E-value=75 Score=33.86 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=49.5
Q ss_pred EEEEEEcCCCceEEEEEEEeeccc--------cc------ccceeccceEEEEEecCCCCcchHHHHHHHHHHHHHHHhh
Q 002363 217 HVVFYDMGATTTYAALVYFSAYNA--------KV------YGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNK 282 (930)
Q Consensus 217 ~vlv~D~GggT~dvsvv~~~~~~~--------~~------~g~~~~~~~~~vl~~~~d~~lGG~~~D~~L~~~l~~~f~~ 282 (930)
++|++|+|.||.|+-.+.-...+. .. .+..+.+..+-+.++ ..||--..+++.+|+..
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~G~----~MGGGp~travrrhlk~---- 73 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALIGV----PMGGGPTTRAVRRHLKK---- 73 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEEee----ecCCChhhHHHHHHHhc----
Confidence 589999999999998763211000 00 000111223333343 78999999999998863
Q ss_pred hcCCCCCCCCcHHHHHHHHHHHHHHhhh
Q 002363 283 QVGNGVDVRKSPKAMAKLKKQVKRTKEI 310 (930)
Q Consensus 283 ~~~~~~d~~~~~~~~~kL~~~aek~K~~ 310 (930)
+..+.....+...+....|+++..
T Consensus 74 ----G~rVyatedAAlT~hddleRv~em 97 (342)
T COG4012 74 ----GTRVYATEDAALTLHDDLERVEEM 97 (342)
T ss_pred ----CCeeEechhhhhhhhcCHHHHHhh
Confidence 334445566666677777777653
No 202
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=36.84 E-value=25 Score=42.31 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=16.1
Q ss_pred cEEEEEcCccceEEEEE
Q 002363 25 AVSSVDLGSEWLKVAVV 41 (930)
Q Consensus 25 ~vvGIDfGTt~s~va~~ 41 (930)
.++|||+||++++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~ 18 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAV 18 (536)
T ss_pred eEEEEecCCCceEEEEE
Confidence 48999999999999999
No 203
>PRK10869 recombination and repair protein; Provisional
Probab=36.26 E-value=7.8e+02 Score=29.77 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=10.9
Q ss_pred EEEEc--CCCCcHHHHHHHHHHhCC
Q 002363 371 VELIG--GGTRVPKLQAKLQEYLGR 393 (930)
Q Consensus 371 ViLvG--G~sriP~V~~~l~~~fg~ 393 (930)
.+++| |++.+- |-++|.=.+|.
T Consensus 25 nvitGetGaGKS~-ildAi~~llG~ 48 (553)
T PRK10869 25 TVITGETGAGKSI-AIDALGLCLGG 48 (553)
T ss_pred EEEECCCCCChHH-HHHHHHHHhCC
Confidence 35566 555543 33555555553
No 204
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=35.94 E-value=43 Score=34.80 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCCC---eeEEechhhHHHHHhc
Q 002363 174 QAERKGLMQAAELAGMN---VLSLVNEHSGAALQYG 206 (930)
Q Consensus 174 ~~qR~al~~Aa~~AGl~---~l~Li~EptAAAl~y~ 206 (930)
..-.+.+.+|....|++ ++.++|+.+|.-++.+
T Consensus 168 ~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~ 203 (206)
T PF00349_consen 168 KDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGA 203 (206)
T ss_dssp SBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHH
T ss_pred CccchhHHHHHHHhcccCcceEEEEECCHHHhhhhh
Confidence 33456677787777875 6889999999877654
No 205
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=35.52 E-value=6.6e+02 Score=27.92 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=31.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhCCC--ccCCCC---Ccchhhhcc
Q 002363 367 EIYAVELIGGGTRVPKLQAKLQEYLGRT--ELDRHL---DADEAIVLG 409 (930)
Q Consensus 367 ~I~~ViLvGG~sriP~V~~~l~~~fg~~--~i~~~~---n~deaVa~G 409 (930)
.+..|+|.||.....++.+.|.+.+... ++..+. -.|.+++.|
T Consensus 242 g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 242 GKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 3568999999999999999999865321 232222 457788888
No 206
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=35.10 E-value=26 Score=41.81 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=15.8
Q ss_pred EEEEEcCccceEEEEEE
Q 002363 26 VSSVDLGSEWLKVAVVN 42 (930)
Q Consensus 26 vvGIDfGTt~s~va~~~ 42 (930)
++|||+|||++++++++
T Consensus 2 ~lgiDiGtt~~K~~l~d 18 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFE 18 (505)
T ss_pred EEEEeccccceEEEEEc
Confidence 79999999999999993
No 207
>PLN02295 glycerol kinase
Probab=34.99 E-value=27 Score=41.80 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=15.8
Q ss_pred EEEEEcCccceEEEEEE
Q 002363 26 VSSVDLGSEWLKVAVVN 42 (930)
Q Consensus 26 vvGIDfGTt~s~va~~~ 42 (930)
++|||+||+++++++++
T Consensus 2 vlgID~GTts~Ka~l~d 18 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYD 18 (512)
T ss_pred EEEEecCCCceEEEEEC
Confidence 79999999999999993
No 208
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=34.86 E-value=71 Score=26.13 Aligned_cols=30 Identities=23% Similarity=0.237 Sum_probs=26.8
Q ss_pred ccEEEeeCCCCCHHHHHHHHHHHHHcCCCe
Q 002363 162 KDFVISVPPYFGQAERKGLMQAAELAGMNV 191 (930)
Q Consensus 162 ~~~VItVPa~f~~~qR~al~~Aa~~AGl~~ 191 (930)
..-.++.|+.++..+|+.+...|...||..
T Consensus 16 ~~~eL~Fp~~ls~~eRriih~la~~lGL~~ 45 (60)
T cd02639 16 MRDELAFPSSLSPAERRIVHLLASRLGLNH 45 (60)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 356788899999999999999999999975
No 209
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=34.35 E-value=32 Score=40.92 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=15.9
Q ss_pred cEEEEEcCccceEEEEE
Q 002363 25 AVSSVDLGSEWLKVAVV 41 (930)
Q Consensus 25 ~vvGIDfGTt~s~va~~ 41 (930)
.++|||+|||+++++++
T Consensus 2 ~~lgiDiGtt~iKa~l~ 18 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVF 18 (493)
T ss_pred eEEEEecCCCceEEEEE
Confidence 48999999999999999
No 210
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=34.11 E-value=28 Score=41.97 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=15.8
Q ss_pred EEEEEcCccceEEEEEE
Q 002363 26 VSSVDLGSEWLKVAVVN 42 (930)
Q Consensus 26 vvGIDfGTt~s~va~~~ 42 (930)
++|||+|||++++++++
T Consensus 2 ~lgID~GTts~Ka~l~d 18 (541)
T TIGR01315 2 YIGVDVGTGSARACIID 18 (541)
T ss_pred EEEEEecCcCEEEEEEc
Confidence 79999999999999993
No 211
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=33.30 E-value=1.1e+02 Score=35.30 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.5
Q ss_pred CCCcEEEEEEcCCCceEEEEEEEe
Q 002363 213 NESRHVVFYDMGATTTYAALVYFS 236 (930)
Q Consensus 213 ~~~~~vlv~D~GggT~dvsvv~~~ 236 (930)
+..+.+|++|+||..+-+++|++.
T Consensus 72 ~e~g~~LaiD~GGTnlRvc~V~l~ 95 (466)
T COG5026 72 NESGSVLAIDLGGTNLRVCLVVLG 95 (466)
T ss_pred CCCCCEEEEecCCceEEEEEEEeC
Confidence 456899999999999999999886
No 212
>PRK00047 glpK glycerol kinase; Provisional
Probab=32.80 E-value=30 Score=41.13 Aligned_cols=17 Identities=12% Similarity=0.249 Sum_probs=16.1
Q ss_pred cEEEEEcCccceEEEEE
Q 002363 25 AVSSVDLGSEWLKVAVV 41 (930)
Q Consensus 25 ~vvGIDfGTt~s~va~~ 41 (930)
.+||||+|||+++++++
T Consensus 6 ~~lgiD~GTts~Ka~l~ 22 (498)
T PRK00047 6 YILALDQGTTSSRAIIF 22 (498)
T ss_pred EEEEEecCCCceEEEEE
Confidence 58999999999999998
No 213
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=32.49 E-value=52 Score=32.87 Aligned_cols=18 Identities=17% Similarity=0.219 Sum_probs=16.8
Q ss_pred ccEEEEEcCccceEEEEE
Q 002363 24 SAVSSVDLGSEWLKVAVV 41 (930)
Q Consensus 24 ~~vvGIDfGTt~s~va~~ 41 (930)
+.|+|||-|++++..|++
T Consensus 2 m~iLGIDPgl~~tG~avi 19 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVI 19 (164)
T ss_pred CEEEEEccccCceeEEEE
Confidence 579999999999999998
No 214
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=31.92 E-value=2.6e+02 Score=35.47 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHHhccchHHHhHHhhhcc
Q 002363 726 ATAKEFQERLDVLKAIGDPVFFRFKELTAR 755 (930)
Q Consensus 726 a~~~~~~~kl~~L~~~~~pi~~R~~e~~~r 755 (930)
.|.+++..-.++|+. ...++.-+..+..+
T Consensus 773 ~t~eev~~a~~~le~-a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 773 RTLEEVLEAVKELEE-ARRLFTELSKNGDK 801 (1018)
T ss_pred ccHHHHHHHHHHHHH-HHHHHHHHHhcCCC
Confidence 445555554444442 22333444444444
No 215
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=31.83 E-value=5.1e+02 Score=27.57 Aligned_cols=14 Identities=36% Similarity=0.480 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 002363 706 QSFVEKLDEAQEWL 719 (930)
Q Consensus 706 ~~l~~~l~e~~~WL 719 (930)
.+++++++..+.-|
T Consensus 69 ~~~r~r~~~~e~kl 82 (239)
T COG1579 69 QEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444443333
No 216
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=31.38 E-value=3e+02 Score=34.10 Aligned_cols=67 Identities=12% Similarity=0.265 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCCChhhhHHHHHhHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHHH
Q 002363 758 SVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSWLDEKENDQKKTSGFSKPAFTSEEVYEKILKLQDKIN 837 (930)
Q Consensus 758 ai~~l~~~l~~~~~~~~~~~~~~~~it~~e~~~l~~~~~~~~~Wl~~~~~~Q~~~~~~~dP~~~~~di~~k~~~l~~~~~ 837 (930)
+...+...+..+...+... ..++.+++..+...+..++.||+. +. . ...+++.+.+.|++.+.
T Consensus 555 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~----~~-----~----~~~~~~~~~~~l~~~~~ 617 (657)
T PTZ00186 555 VRNNAETQLTTAERQLGEW----KYVSDAEKENVKTLVAELRKAMEN----PN-----V----AKDDLAAATDKLQKAVM 617 (657)
T ss_pred HHHHHHHHHHHHHHHhhhh----ccCCHHHHHHHHHHHHHHHHHHhc----CC-----c----CHHHHHHHHHHHHHHHH
Confidence 4455556666666666432 468899999999999999999962 11 1 23789999999999999
Q ss_pred hhhc
Q 002363 838 SINR 841 (930)
Q Consensus 838 ~l~~ 841 (930)
.+..
T Consensus 618 ~~~~ 621 (657)
T PTZ00186 618 ECGR 621 (657)
T ss_pred HHHH
Confidence 9986
No 217
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=30.23 E-value=46 Score=31.83 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=13.9
Q ss_pred EEEEcCccceEEEEE
Q 002363 27 SSVDLGSEWLKVAVV 41 (930)
Q Consensus 27 vGIDfGTt~s~va~~ 41 (930)
+|||||+..+.+|+.
T Consensus 1 laiD~G~kriGvA~~ 15 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQ 15 (130)
T ss_pred CeEccCCCeEEEEEE
Confidence 599999999999987
No 218
>PRK04123 ribulokinase; Provisional
Probab=29.87 E-value=38 Score=40.82 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=16.1
Q ss_pred cEEEEEcCccceEEEEE
Q 002363 25 AVSSVDLGSEWLKVAVV 41 (930)
Q Consensus 25 ~vvGIDfGTt~s~va~~ 41 (930)
.++|||+|||+++++++
T Consensus 4 ~~lgiD~GTts~Ka~l~ 20 (548)
T PRK04123 4 YVIGLDFGTDSVRALLV 20 (548)
T ss_pred EEEEEecCCCceEEEEE
Confidence 48999999999999999
No 219
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=29.86 E-value=1.1e+03 Score=28.62 Aligned_cols=39 Identities=13% Similarity=0.251 Sum_probs=22.7
Q ss_pred HhccchHHHhHHhhhcchHHHHHHHHHHHHHHHHHhccc
Q 002363 739 KAIGDPVFFRFKELTARPASVEHAQKYLGQLQQIVNDWE 777 (930)
Q Consensus 739 ~~~~~pi~~R~~e~~~rp~ai~~l~~~l~~~~~~~~~~~ 777 (930)
+.+..-+.........=|..++.++..|..+......+.
T Consensus 283 ~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg 321 (563)
T TIGR00634 283 EEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYG 321 (563)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 333334444444444448888888888777776655443
No 220
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=29.85 E-value=76 Score=36.14 Aligned_cols=48 Identities=17% Similarity=0.120 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhC
Q 002363 343 CEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLG 392 (930)
Q Consensus 343 ~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg 392 (930)
++.....+...|+++|+++|++.+||+.+++.+++.++- ...+++.||
T Consensus 266 ~~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~~--d~~~~~llg 313 (372)
T PRK07515 266 FKEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINMN--QLIGKKVLG 313 (372)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHH--HHHHHHhcc
Confidence 345567778899999999999999999999999997743 223344455
No 221
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=29.54 E-value=4.9e+02 Score=26.61 Aligned_cols=24 Identities=17% Similarity=0.448 Sum_probs=20.3
Q ss_pred chHHHHHHHHHHHHHHHHHhcccc
Q 002363 755 RPASVEHAQKYLGQLQQIVNDWET 778 (930)
Q Consensus 755 rp~ai~~l~~~l~~~~~~~~~~~~ 778 (930)
=|+.++.++..+..++..++.|+.
T Consensus 133 Dp~~i~~~~~~~~~~~~~anrwTD 156 (188)
T PF03962_consen 133 DPEKIEKLKEEIKIAKEAANRWTD 156 (188)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578889999999999988888865
No 222
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.44 E-value=78 Score=29.99 Aligned_cols=23 Identities=30% Similarity=0.700 Sum_probs=19.3
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHH
Q 002363 714 EAQEWLYTDGEDATAKEFQERLD 736 (930)
Q Consensus 714 e~~~WL~~~g~~a~~~~~~~kl~ 736 (930)
..++||+++++..|.++|++|..
T Consensus 90 knE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 90 KNEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred chhhhhhccCCccCHHHHHHHhh
Confidence 35679999989999999998764
No 223
>PLN02669 xylulokinase
Probab=28.89 E-value=44 Score=40.40 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=18.2
Q ss_pred CCccEEEEEcCccceEEEEEE
Q 002363 22 SQSAVSSVDLGSEWLKVAVVN 42 (930)
Q Consensus 22 ~~~~vvGIDfGTt~s~va~~~ 42 (930)
....+||||+||+.+++++++
T Consensus 6 ~~~~~LGiD~GT~s~Ka~l~d 26 (556)
T PLN02669 6 EDSLFLGFDSSTQSLKATVLD 26 (556)
T ss_pred CCCeEEEEecccCCeEEEEEc
Confidence 455699999999999999993
No 224
>PRK04863 mukB cell division protein MukB; Provisional
Probab=28.49 E-value=1.7e+03 Score=30.56 Aligned_cols=49 Identities=12% Similarity=0.115 Sum_probs=27.2
Q ss_pred CCCCChhhhHHHHH----hHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHHHhhhc
Q 002363 780 KPWLPKDRTDEVLK----DSETFKSWLDEKENDQKKTSGFSKPAFTSEEVYEKILKLQDKINSINR 841 (930)
Q Consensus 780 ~~~it~~e~~~l~~----~~~~~~~Wl~~~~~~Q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~ 841 (930)
-+.++.+++..... .+.+...++.+...+. .+++.++..+......+.+
T Consensus 432 ~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL-------------~~lea~leql~~~~~~l~~ 484 (1486)
T PRK04863 432 LPDLTADNAEDWLEEFQAKEQEATEELLSLEQKL-------------SVAQAAHSQFEQAYQLVRK 484 (1486)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
Confidence 35677777665443 4455555666554433 3445555666666555543
No 225
>PLN03172 chalcone synthase family protein; Provisional
Probab=28.40 E-value=1.3e+02 Score=34.70 Aligned_cols=51 Identities=12% Similarity=0.099 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCC-CcHHHHHHHHHHhCCC
Q 002363 344 EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGT-RVPKLQAKLQEYLGRT 394 (930)
Q Consensus 344 ~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~s-riP~V~~~l~~~fg~~ 394 (930)
+...+-..+.++++|+++|+.+++|+.|+++..+. .+|.+--.|.+.+|-.
T Consensus 100 ~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~ 151 (393)
T PLN03172 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLK 151 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCCC
Confidence 33455566778999999999999999998777655 6999999999999864
No 226
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=28.38 E-value=53 Score=38.29 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=24.3
Q ss_pred eEEechhhHH-----HHHhccccCCCC-----CCcEEEEEEcCCCceEEEEE
Q 002363 192 LSLVNEHSGA-----ALQYGIDKDFSN-----ESRHVVFYDMGATTTYAALV 233 (930)
Q Consensus 192 l~Li~EptAA-----Al~y~~~~~~~~-----~~~~vlv~D~GggT~dvsvv 233 (930)
+++|+-..=+ +++|.+.+-... ....+-++||||++++|+..
T Consensus 130 v~visG~eEg~y~WvtvNyl~g~l~~~~~~~~~~~t~g~lDlGGaStQIaf~ 181 (434)
T PF01150_consen 130 VRVISGEEEGIYGWVTVNYLLGRLDSSGASKSPSNTVGALDLGGASTQIAFE 181 (434)
T ss_dssp CEE--HHHHHHHHHHHHHHHTTTSSSSTEEEEESS-EEEEEE-SSEEEEEEE
T ss_pred eEecCHHHhhHhHHHHHHHHhCccccccccCCCCceEEEEecCCcceeeeec
Confidence 4666644333 555655441112 25789999999999999954
No 227
>PLN03173 chalcone synthase; Provisional
Probab=27.64 E-value=1.4e+02 Score=34.33 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCC-CcHHHHHHHHHHhCCC
Q 002363 345 DLWERSLVPLREVLNYSGLKMDEIYAVELIGGGT-RVPKLQAKLQEYLGRT 394 (930)
Q Consensus 345 ~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~s-riP~V~~~l~~~fg~~ 394 (930)
.-.+-..+.++++|+++|+.+++|+.|+++..+. ..|.+--.|.+.+|-.
T Consensus 101 ~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~ 151 (391)
T PLN03173 101 EVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLR 151 (391)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCCC
Confidence 3445566788999999999999999998887554 5899999999999864
No 228
>PLN03170 chalcone synthase; Provisional
Probab=27.56 E-value=2.2e+02 Score=32.83 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCC-CcHHHHHHHHHHhCCC
Q 002363 344 EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGT-RVPKLQAKLQEYLGRT 394 (930)
Q Consensus 344 ~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~s-riP~V~~~l~~~fg~~ 394 (930)
+...+-..+..+++|+++|++.++|+.|+++-.+. .+|.+--.|.+.+|-.
T Consensus 104 ~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~ 155 (401)
T PLN03170 104 VEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLR 155 (401)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCcC
Confidence 33455567788999999999999999998877544 6999999999999864
No 229
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=27.23 E-value=4.9e+02 Score=32.12 Aligned_cols=65 Identities=22% Similarity=0.290 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHhHHHHHHhhccCcccccccCCHHHHHHHHHHHHHHHH
Q 002363 647 LSKEALVDAEAKLEELD-KKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQE 717 (930)
Q Consensus 647 ls~~~l~~~~~~l~~~~-~~D~~~~~~~eakN~LEs~iY~~r~~l~~~~~~~~~~~~~er~~l~~~l~e~~~ 717 (930)
++..++......+..+. ..-....+..+....||.-+-.+..+|... -.+++.+.+.+.+.+++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~------~~~e~i~~l~e~l~~l~~ 435 (650)
T TIGR03185 370 LSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTI------PSEEQIAQLLEELGEAQN 435 (650)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHHHHH
Confidence 55666655544444443 122333444455556666666667766532 133455555555555543
No 230
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=27.21 E-value=1.8e+02 Score=31.69 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=25.6
Q ss_pred cCCCeeEEechhhHHHHHhccccCCCCCCcEEEEEEcCCC
Q 002363 187 AGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGAT 226 (930)
Q Consensus 187 AGl~~l~Li~EptAAAl~y~~~~~~~~~~~~vlv~D~Ggg 226 (930)
-|+++ .+.|+..|+|++-.... ......++++-+|.|
T Consensus 96 ~~~pv-~v~NDa~a~a~aE~~~g--~~~~~~~~~l~ig~G 132 (291)
T PRK05082 96 TDLPT-IALNDAQAAAWAEYQAL--PDDIRNMVFITVSTG 132 (291)
T ss_pred hCCCE-EEECcHHHHHHHHHHhc--CCCCCCEEEEEECCC
Confidence 47865 69999999998743321 123467888888865
No 231
>PRK13317 pantothenate kinase; Provisional
Probab=27.18 E-value=49 Score=36.07 Aligned_cols=18 Identities=17% Similarity=0.280 Sum_probs=16.3
Q ss_pred ccEEEEEcCccceEEEEE
Q 002363 24 SAVSSVDLGSEWLKVAVV 41 (930)
Q Consensus 24 ~~vvGIDfGTt~s~va~~ 41 (930)
...||||+|+|.++++++
T Consensus 2 ~~~iGIDiGstt~K~v~~ 19 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYL 19 (277)
T ss_pred CceEEEEeCcccEEEEEE
Confidence 357999999999999998
No 232
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=27.08 E-value=27 Score=40.48 Aligned_cols=53 Identities=28% Similarity=0.327 Sum_probs=40.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhCC-----Cc-------c--CCCCCcchhhhcccHHHHhhhc
Q 002363 366 DEIYAVELIGGGTRVPKLQAKLQEYLGR-----TE-------L--DRHLDADEAIVLGASLLAANLS 418 (930)
Q Consensus 366 ~~I~~ViLvGG~sriP~V~~~l~~~fg~-----~~-------i--~~~~n~deaVa~GAa~~aa~ls 418 (930)
+-.++|.+|||+...|.+...|++..-. .+ | .+.+||...+=.|||++|..-.
T Consensus 525 Kl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 525 KLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 3467899999999999999999987642 11 1 2337888888889999987643
No 233
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=27.04 E-value=72 Score=36.76 Aligned_cols=48 Identities=33% Similarity=0.521 Sum_probs=38.2
Q ss_pred cccEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEEechhhH-HHHHhcccc
Q 002363 161 VKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSG-AALQYGIDK 209 (930)
Q Consensus 161 ~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~l~Li~EptA-AAl~y~~~~ 209 (930)
|..+|+.-|+. ...---.++-||+++|.+.+-.+=-.-| ||++||...
T Consensus 151 V~~Iv~~TPp~-~g~i~p~vL~AA~~~Gv~eIy~vGGAQAIAAlAyGTet 199 (425)
T PRK00877 151 VKEIVMVTPPP-DGEINPAILAAAALAGVDEVYKVGGAQAIAALAYGTES 199 (425)
T ss_pred CCeEEEEeCCC-CCCCCHHHHHHHHHcCCCeeeccCCHHHHHHHHcCCCC
Confidence 66888888885 4334567889999999998888887777 799999854
No 234
>PLN02854 3-ketoacyl-CoA synthase
Probab=26.90 E-value=1.1e+02 Score=36.54 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=42.2
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEE-EcCCCCcHHHHHHHHHHhCCC
Q 002363 333 SITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVEL-IGGGTRVPKLQAKLQEYLGRT 394 (930)
Q Consensus 333 ~ItR~efe~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViL-vGG~sriP~V~~~l~~~fg~~ 394 (930)
.-.|+|.+.+ +...++++|+++|+++++|+.||+ +.+....|.+-.+|.+.+|-.
T Consensus 182 ~~~r~ea~~v-------~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LGlr 237 (521)
T PLN02854 182 EEARAEAEAV-------MFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYKLR 237 (521)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCCC
Confidence 4445555544 566778899999999999999987 334445899999999999864
No 235
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=26.85 E-value=4.6e+02 Score=25.89 Aligned_cols=34 Identities=9% Similarity=0.229 Sum_probs=27.7
Q ss_pred HHHhccchHHHhHHhhhcchHHHHHHHHHHHHHHHH
Q 002363 737 VLKAIGDPVFFRFKELTARPASVEHAQKYLGQLQQI 772 (930)
Q Consensus 737 ~L~~~~~pi~~R~~e~~~rp~ai~~l~~~l~~~~~~ 772 (930)
-|..+..|++.++.+ .++.|++.|++.+..+.+.
T Consensus 12 ~L~~li~Pvl~eL~~--~d~~A~q~Lr~Af~kAE~~ 45 (154)
T PF06840_consen 12 ALQCLIRPVLDELEQ--KDSDAIQTLRAAFTKAEKS 45 (154)
T ss_dssp HHHHTHHHHHHHHHT--THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHh
Confidence 477889999999988 6777999999988876553
No 236
>PRK11024 colicin uptake protein TolR; Provisional
Probab=26.81 E-value=5.8e+02 Score=24.54 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=24.9
Q ss_pred cEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEEechh
Q 002363 163 DFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEH 198 (930)
Q Consensus 163 ~~VItVPa~f~~~qR~al~~Aa~~AGl~~l~Li~Ep 198 (930)
.++|..-..-....--.+.++|+.||+.-+.|..++
T Consensus 105 ~V~i~aD~~~~~~~vv~vmd~~k~aG~~~v~l~t~~ 140 (141)
T PRK11024 105 VFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLMTQP 140 (141)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 355555555555666778888899998877776554
No 237
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=25.74 E-value=66 Score=31.53 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=0.0
Q ss_pred EEEEEcCccceEEEEEEeeCCCCCEEEee
Q 002363 26 VSSVDLGSEWLKVAVVNLKPGQSPISIAI 54 (930)
Q Consensus 26 vvGIDfGTt~s~va~~~~~~g~~~v~iv~ 54 (930)
|+|||-|++++..|++ ...+..+.++.
T Consensus 1 ILGIDPgl~~tG~avi--~~~~~~~~~i~ 27 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVI--EEDGGKLRLID 27 (149)
T ss_dssp EEEEE--SSEEEEEEE--EEETTEEEEEE
T ss_pred CEEECCCCCCeeEEEE--EeeCCEEEEEE
No 238
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=25.29 E-value=1.1e+02 Score=35.17 Aligned_cols=49 Identities=33% Similarity=0.493 Sum_probs=30.9
Q ss_pred cccEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEEechhhH-HHHHhcccc
Q 002363 161 VKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSG-AALQYGIDK 209 (930)
Q Consensus 161 ~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~l~Li~EptA-AAl~y~~~~ 209 (930)
|..+|++-|+.-+-.---+++-||.++|.+.+--+--.-| ||++||...
T Consensus 137 V~~Iv~~TPp~~~G~i~p~vL~Aa~~~Gv~evy~vGGaqAIAAlAyGTet 186 (412)
T PF00815_consen 137 VKEIVVCTPPPKDGKINPAVLAAAHLAGVDEVYKVGGAQAIAALAYGTET 186 (412)
T ss_dssp -SEEEEEE-SS------HHHHHHHHHTT-SEEEE--HHHHHHHHHH--SS
T ss_pred CCeEEEEcCCCccCCCCHHHHHHHHHcCCCEEEecccHHHHHHHHcCCCC
Confidence 5688999998875555678999999999998888887777 788999754
No 239
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.18 E-value=1.6e+03 Score=29.00 Aligned_cols=19 Identities=11% Similarity=-0.060 Sum_probs=8.2
Q ss_pred HHhHHHHHHHHHHHHHHhh
Q 002363 792 LKDSETFKSWLDEKENDQK 810 (930)
Q Consensus 792 ~~~~~~~~~Wl~~~~~~Q~ 810 (930)
...+...++-..+.+++|.
T Consensus 362 ~~rl~~l~~~~~~l~~Kqg 380 (1200)
T KOG0964|consen 362 KKRLAKLEQKQRDLLAKQG 380 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3344444444444444443
No 240
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=25.14 E-value=5.7e+02 Score=29.53 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCC-CcHHHHHHHHHHhC
Q 002363 344 EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGT-RVPKLQAKLQEYLG 392 (930)
Q Consensus 344 ~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~s-riP~V~~~l~~~fg 392 (930)
+-++.|+.+.|-......+ ..+|+|+++||-+ ..+.|++.|.+.++
T Consensus 307 ~~f~yri~k~Iga~~a~L~---G~vDaiVFTGGIGEns~~vr~~i~~~l~ 353 (404)
T TIGR00016 307 KMYVHRIAKYIGSYIASLE---GNLDAIVFTGGIGENAATVRELVLEALE 353 (404)
T ss_pred HHHHHHHHHHHHHHHHHhC---CCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 4455666666655544322 1489999999999 99999999998765
No 241
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=24.64 E-value=1.7e+02 Score=32.06 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcCCCcCCccEEEE-EcCCCCcHHHHHHHHHHhCCC
Q 002363 350 SLVPLREVLNYSGLKMDEIYAVEL-IGGGTRVPKLQAKLQEYLGRT 394 (930)
Q Consensus 350 i~~~i~~~L~~a~~~~~~I~~ViL-vGG~sriP~V~~~l~~~fg~~ 394 (930)
+...|+++|+++|+++.+|+.++. +..++-.|.+-.+|.+.||-.
T Consensus 87 ~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~mr 132 (290)
T PF08392_consen 87 IFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYGMR 132 (290)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhCCC
Confidence 567788999999999999997754 456788999999999999865
No 242
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=24.50 E-value=65 Score=31.27 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=50.9
Q ss_pred ccCcccEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCCCccCCCCCcch
Q 002363 325 YVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADE 404 (930)
Q Consensus 325 ~~~~d~~~~ItR~efe~l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~~~i~~~~n~de 404 (930)
++..++++-|=..+|.+ .+.+++.+-..+.|...|...++| .|+-|=|+--+|++-+.+.+. -+.|-
T Consensus 3 ~~~~~~ri~IV~s~fn~---~I~~~Ll~ga~~~l~~~gv~~~~i-~v~~VPGa~EiP~a~~~l~~s---------~~~Da 69 (141)
T PLN02404 3 LDGEGLRFGVVVARFNE---IITKNLLEGALETFKRYSVKEENI-DVVWVPGSFEIPVVAQRLAKS---------GKYDA 69 (141)
T ss_pred cCCCCCEEEEEEecCcH---HHHHHHHHHHHHHHHHcCCCccce-EEEEcCcHHHHHHHHHHHHhc---------CCCCE
Confidence 34445566555566654 344455555567777888876655 467888999999988777532 13466
Q ss_pred hhhcccHHHHh
Q 002363 405 AIVLGASLLAA 415 (930)
Q Consensus 405 aVa~GAa~~aa 415 (930)
.|++||.+.+.
T Consensus 70 vIaLG~VIrGe 80 (141)
T PLN02404 70 ILCIGAVIRGD 80 (141)
T ss_pred EEEEEEEEeCC
Confidence 77888876654
No 243
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=24.11 E-value=63 Score=36.83 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=15.9
Q ss_pred cEEEEEcCccceEEEEE
Q 002363 25 AVSSVDLGSEWLKVAVV 41 (930)
Q Consensus 25 ~vvGIDfGTt~s~va~~ 41 (930)
.++|||+|++.+++.++
T Consensus 3 y~lGIDIGSTsTKaVVm 19 (432)
T TIGR02259 3 CFVGIDLGSTTTKAVLM 19 (432)
T ss_pred eEEEEEcCchhEEEEEE
Confidence 48999999999999998
No 244
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=23.66 E-value=2.1e+02 Score=30.16 Aligned_cols=44 Identities=18% Similarity=0.177 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHcCCCcCCccEEEEEcCCCC--cHHHHHHHHHHhCC
Q 002363 350 SLVPLREVLNYSGLKMDEIYAVELIGGGTR--VPKLQAKLQEYLGR 393 (930)
Q Consensus 350 i~~~i~~~L~~a~~~~~~I~~ViLvGG~sr--iP~V~~~l~~~fg~ 393 (930)
....++++|++++++.++|+.|++.....- .|.+-..|...+|-
T Consensus 11 ~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~ 56 (254)
T cd00327 11 GFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGI 56 (254)
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCC
Confidence 456778899999999999999887765443 58888889999986
No 245
>PF04839 PSRP-3_Ycf65: Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65); InterPro: IPR006924 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This small acidic protein is found in 30S ribosomal subunit of cyanobacteria and plant plastids. In plants it has been named plastid-specific ribosomal protein 3 (PSRP-3), and in cyanobacteria it is named Ycf65. Plastid-specific ribosomal proteins may mediate the effects of nuclear factors on plastid translation. The acidic PSRPs are thought to contribute to protein-protein interactions in the 30S subunit, and are not thought to bind RNA [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome, 0009536 plastid; PDB: 2KT9_A.
Probab=23.41 E-value=2e+02 Score=22.48 Aligned_cols=26 Identities=23% Similarity=0.602 Sum_probs=21.4
Q ss_pred CCCCCChhhhHHHHHhHHHHHHHHHH
Q 002363 779 NKPWLPKDRTDEVLKDSETFKSWLDE 804 (930)
Q Consensus 779 ~~~~it~~e~~~l~~~~~~~~~Wl~~ 804 (930)
.++||++.|+-.|++.+.++...+.+
T Consensus 22 ~K~WIs~~e~i~lLN~~TeiIN~Wqe 47 (49)
T PF04839_consen 22 SKPWISEKERIELLNQATEIINYWQE 47 (49)
T ss_dssp HSTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999888776554
No 246
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=23.32 E-value=66 Score=37.98 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=19.9
Q ss_pred CccEEEEEcCccceEEEEEEeeCC
Q 002363 23 QSAVSSVDLGSEWLKVAVVNLKPG 46 (930)
Q Consensus 23 ~~~vvGIDfGTt~s~va~~~~~~g 46 (930)
...++|||.||+.+++++++.++|
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~ 28 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNG 28 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCC
Confidence 356999999999999999954455
No 247
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=23.20 E-value=1.4e+02 Score=32.27 Aligned_cols=70 Identities=20% Similarity=0.158 Sum_probs=45.7
Q ss_pred ccEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEEechhhHHHHHhccccCCCC---------CCcEEEEEEcCCCceEEEE
Q 002363 162 KDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSN---------ESRHVVFYDMGATTTYAAL 232 (930)
Q Consensus 162 ~~~VItVPa~f~~~qR~al~~Aa~~AGl~~l~Li~EptAAAl~y~~~~~~~~---------~~~~vlv~D~GggT~dvsv 232 (930)
.++|+|--.-=-..||..=+.-.+ .|++.-+++=+||-+||.||++-.+.+ +++..|=+=|-+|||.+--
T Consensus 251 ~H~VLswt~~D~N~qk~LNrkllk-~gl~r~~IVMDPTTcALGYGieyai~~m~RiRlaaLkGD~~l~mPmSSGtTNAwg 329 (403)
T COG2069 251 DHVVLSWTQMDVNMQKTLNRKLLK-RGLPRDRIVMDPTTCALGYGIEYAITNMERIRLAALKGDEDLQMPMSSGTTNAWG 329 (403)
T ss_pred CceEEEeeccChHHHHHHHHHHHH-ccCChhheeeccchhhhccceeeehhHHHHHHHHhccCcccccccccCCCcchhh
Confidence 467777443333455555444444 679988999999999999998653321 3455666667777766543
No 248
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=23.08 E-value=1.9e+02 Score=31.72 Aligned_cols=70 Identities=24% Similarity=0.194 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCC--------CccCCCCCcchhhhcccHHHHh
Q 002363 345 DLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGR--------TELDRHLDADEAIVLGASLLAA 415 (930)
Q Consensus 345 ~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~--------~~i~~~~n~deaVa~GAa~~aa 415 (930)
.++++....+-.+|...- ..-+.+.|+|-||.+..|.+.+.|++.+.. ..+....-.+.+.++|||..+.
T Consensus 224 ~~~~~~~~~la~~l~n~~-~~ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~l 301 (303)
T PRK13310 224 AHVERYLDLLAICLGNIL-TIVDPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLHL 301 (303)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHhh
Confidence 344444444444443311 112456777877766656555555555431 1233333456788999997653
No 249
>PF13941 MutL: MutL protein
Probab=23.02 E-value=36 Score=39.70 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=0.0
Q ss_pred hhHHHHHhccccCCCCCCcEEEEEEcCCCceEE
Q 002363 198 HSGAALQYGIDKDFSNESRHVVFYDMGATTTYA 230 (930)
Q Consensus 198 ptAAAl~y~~~~~~~~~~~~vlv~D~GggT~dv 230 (930)
||.+|+.-+..--....-..+|+||+||-||||
T Consensus 230 PTP~AVl~~~~lla~~~~g~llvVDIGGATTDV 262 (457)
T PF13941_consen 230 PTPAAVLRAAELLAEGGIGDLLVVDIGGATTDV 262 (457)
T ss_pred CCHHHHHHHHHHHHhcccCCEEEEEccCcccch
No 250
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=22.92 E-value=1.5e+03 Score=30.39 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhhc----CCCC-CHHHHHHHHHHHHhccchHHH
Q 002363 703 EERQSFVEKLDEAQEWLYTD----GEDA-TAKEFQERLDVLKAIGDPVFF 747 (930)
Q Consensus 703 ~er~~l~~~l~e~~~WL~~~----g~~a-~~~~~~~kl~~L~~~~~pi~~ 747 (930)
..+..+...+.+++.|+..+ |-|. ....|..++..|.....-|..
T Consensus 743 ~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~ 792 (1201)
T PF12128_consen 743 AAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEE 792 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777888887753 4333 555666666666655554443
No 251
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=22.91 E-value=1.6e+02 Score=32.59 Aligned_cols=48 Identities=25% Similarity=0.142 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCC
Q 002363 343 CEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGR 393 (930)
Q Consensus 343 ~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~ 393 (930)
+...+..+...|+++|++++++.++|+.+++..++ +.+.+.+.+.+|-
T Consensus 220 ~~~~~~~~~~~i~~~L~~~g~~~~did~~~~h~~~---~~~~~~~~~~lg~ 267 (325)
T PRK12879 220 FKWAVRTMPKGARQVLEKAGLTKDDIDWVIPHQAN---LRIIESLCEKLGI 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHcCC
Confidence 33445667788999999999999999999999887 4555677888764
No 252
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=22.79 E-value=6.4e+02 Score=25.09 Aligned_cols=69 Identities=16% Similarity=0.153 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHcCCCcC-----CccEEEEEc-CCCCcHHHHHHHHHHhCCCccCCCCCcchhhhcccHHHHhhhc
Q 002363 347 WERSLVPLREVLNYSGLKMD-----EIYAVELIG-GGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLS 418 (930)
Q Consensus 347 ~~~i~~~i~~~L~~a~~~~~-----~I~~ViLvG-G~sriP~V~~~l~~~fg~~~i~~~~n~deaVa~GAa~~aa~ls 418 (930)
+-+....+.-++...+++.. .|+..+ +| |...=--|+.+|+.+++-... +.+.|+|=|++.|+.++...
T Consensus 82 l~~arGvi~la~~~~~ipv~ey~P~~VKk~v-tG~G~A~K~qV~~mv~~~l~l~~~--~~~~D~aDAlAiA~~h~~~~ 156 (164)
T PRK00039 82 LGQARGVAILAAAQRGLPVAEYTPLQVKKAV-VGYGRADKEQVQHMVKRLLNLPEI--PKPDDAADALAIAICHAHRR 156 (164)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECHHHhhhhh-cCCCCCCHHHHHHHHHHHhCCCCC--CCCCCHHHHHHHHHHHHhhc
Confidence 33455666677777666533 333322 33 333335788999999986432 33447777888887777644
No 253
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=22.68 E-value=7.6e+02 Score=24.46 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHHHhhh
Q 002363 798 FKSWLDEKENDQKKTSGFSKPAFTSEEVYEKILKLQDKINSIN 840 (930)
Q Consensus 798 ~~~Wl~~~~~~Q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~ 840 (930)
...|+++....-...+... ...++...+..++.....+.
T Consensus 118 l~~wl~~~e~~l~~~~~~~----~~~~~~~~l~~~~~~~~~~~ 156 (213)
T cd00176 118 LEQWLEEKEAALASEDLGK----DLESVEELLKKHKELEEELE 156 (213)
T ss_pred HHHHHHHHHHHhcCcccCC----CHHHHHHHHHHHHHHHHHHH
Confidence 8889988777655433322 56666666666665555443
No 254
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=22.32 E-value=1.8e+02 Score=33.36 Aligned_cols=73 Identities=27% Similarity=0.309 Sum_probs=48.8
Q ss_pred cccEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEEechhhH-HHHHhccccC----CCCCCc------------EEEEEEc
Q 002363 161 VKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSG-AALQYGIDKD----FSNESR------------HVVFYDM 223 (930)
Q Consensus 161 ~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~l~Li~EptA-AAl~y~~~~~----~~~~~~------------~vlv~D~ 223 (930)
+..+|+.-|+.=+..---.++-||+++|++-+-.+--.-| ||++||...- .--+|. ..+-+||
T Consensus 123 V~~Iv~~TPp~~~g~i~p~iL~aa~~~Gv~eiy~vGGaQAIAAlAyGTesi~~VDkIvGPGN~yV~~AK~~v~g~V~ID~ 202 (390)
T cd06572 123 VKEIVVVTPPRKDGKINPAILAAAKLAGVDEIYKVGGAQAIAALAYGTETIPKVDKIVGPGNIYVTAAKRLVSGDVGIDM 202 (390)
T ss_pred CCeEEEEeCcCCCCCCCHHHHHHHHHcCCcEEeccCCHHHHHHHHcCCcCCCCCCEeeCCchHHHHHHHHHhcCCcCccC
Confidence 6688888888432223356888999999998777877777 7899997531 000111 1234777
Q ss_pred CCCceEEEEE
Q 002363 224 GATTTYAALV 233 (930)
Q Consensus 224 GggT~dvsvv 233 (930)
=+|-+.+.|+
T Consensus 203 ~AGPSEvlIi 212 (390)
T cd06572 203 PAGPSEVLVI 212 (390)
T ss_pred CCCCceEEEE
Confidence 7887777777
No 255
>PRK13321 pantothenate kinase; Reviewed
Probab=22.32 E-value=72 Score=34.29 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=15.3
Q ss_pred EEEEEcCccceEEEEE
Q 002363 26 VSSVDLGSEWLKVAVV 41 (930)
Q Consensus 26 vvGIDfGTt~s~va~~ 41 (930)
+++||+|+|++++|++
T Consensus 2 iL~IDIGnT~ik~gl~ 17 (256)
T PRK13321 2 LLLIDVGNTNIKLGVF 17 (256)
T ss_pred EEEEEECCCeEEEEEE
Confidence 6899999999999999
No 256
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=21.96 E-value=69 Score=36.64 Aligned_cols=48 Identities=31% Similarity=0.488 Sum_probs=36.9
Q ss_pred cccEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEEechhhH-HHHHhcccc
Q 002363 161 VKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSG-AALQYGIDK 209 (930)
Q Consensus 161 ~~~~VItVPa~f~~~qR~al~~Aa~~AGl~~l~Li~EptA-AAl~y~~~~ 209 (930)
+..+|++.|+.=+. --..++-||+++|.+-+-.+--.-| |||+||...
T Consensus 147 v~~Iv~~tPp~~~g-v~p~iL~AA~~~Gv~eIy~vGGAQAIAAlAYGTet 195 (425)
T COG0141 147 VEEIVVVTPPPKDG-VNPEILAAARLAGVDEVYKVGGAQAIAALAYGTET 195 (425)
T ss_pred CceEEEECCCCCCC-CCHHHHHHHHHhCcHHHHHccCHHHHHHHHccCCc
Confidence 56888888888433 4567899999999987666766666 789999753
No 257
>PLN02192 3-ketoacyl-CoA synthase
Probab=21.36 E-value=2.3e+02 Score=33.82 Aligned_cols=53 Identities=11% Similarity=0.032 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCC-CCcHHHHHHHHHHhCCC
Q 002363 342 LCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGG-TRVPKLQAKLQEYLGRT 394 (930)
Q Consensus 342 l~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~-sriP~V~~~l~~~fg~~ 394 (930)
..++...-+...++++|+++|++++|||.||..... ...|.+-.+|.+.+|-.
T Consensus 172 ~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lGlr 225 (511)
T PLN02192 172 ARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLR 225 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhCCC
Confidence 333334446678889999999999999988765322 35899999999999864
No 258
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=21.32 E-value=3.7e+02 Score=32.01 Aligned_cols=41 Identities=15% Similarity=0.287 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHhHHhh
Q 002363 704 ERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDVLKAIGDPVFFRFKEL 752 (930)
Q Consensus 704 er~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~ 752 (930)
|..+|...=+++..|+..+ ++++| +.|-.--.-|+.||+.+
T Consensus 50 EIKKLQRlRdQIKtW~ss~-------dIKDK-~~L~d~RrlIE~~MErf 90 (575)
T KOG2150|consen 50 EIKKLQRLRDQIKTWQSSS-------DIKDK-DSLLDNRRLIEQRMERF 90 (575)
T ss_pred HHHHHHHHHHHHHhhhccc-------ccccH-HHHHHHHHHHHHHHHHH
Confidence 5677777888889999765 45555 44444445566666555
No 259
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=21.24 E-value=1.5e+02 Score=25.31 Aligned_cols=56 Identities=14% Similarity=0.423 Sum_probs=35.7
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHhc----cchHHHhHH-hhhcchHHHHHHHHHHHHHHHHHhcc
Q 002363 716 QEWLYTDGEDATAKEFQERLDVLKAI----GDPVFFRFK-ELTARPASVEHAQKYLGQLQQIVNDW 776 (930)
Q Consensus 716 ~~WL~~~g~~a~~~~~~~kl~~L~~~----~~pi~~R~~-e~~~rp~ai~~l~~~l~~~~~~~~~~ 776 (930)
+.||..+ ..+..+|.+.+-.+ ++..-.|++ -++.||..|+.+..+-..++..++.+
T Consensus 13 skWL~~~-----l~dmd~kvk~mlklieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAerY 73 (74)
T PF07765_consen 13 SKWLQEN-----LSDMDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAERY 73 (74)
T ss_pred CHHHHHH-----HHHHHHHHHHHHHHhccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3566643 55555555544333 344555554 46789999999988888888777643
No 260
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=21.23 E-value=1.3e+02 Score=29.37 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=17.0
Q ss_pred ccEEEEEcCccceEEEEEE
Q 002363 24 SAVSSVDLGSEWLKVAVVN 42 (930)
Q Consensus 24 ~~vvGIDfGTt~s~va~~~ 42 (930)
|.|++||.|+-|...++++
T Consensus 1 mii~sIDiGikNlA~~iie 19 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIE 19 (143)
T ss_pred CeEEEEecCCCceeEEEEE
Confidence 4689999999999999984
No 261
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=21.05 E-value=1.5e+03 Score=27.34 Aligned_cols=171 Identities=15% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHhHHhHHHHHHhhccCcccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 002363 659 LEELDKKDADRRRTA-ELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDV 737 (930)
Q Consensus 659 l~~~~~~D~~~~~~~-eakN~LEs~iY~~r~~l~~~~~~~~~~~~~er~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~~ 737 (930)
+..+..--....+.. ....++|..+|++.+.+.. |.-+........+...|+.+++=+..= ....+++.+.-.+
T Consensus 59 ~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~---~rf~ka~~~i~~~~~~l~~~e~~i~~i--~~~l~~L~~~e~~ 133 (560)
T PF06160_consen 59 EEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADK---YRFKKAKQAIKEIEEQLDEIEEDIKEI--LDELDELLESEEK 133 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_pred HHhccchHHHhHHhhhcc--------hHHHHHHHHHHHHHHHHHhccccCCCCCChhhhHHHHHhHHHHHHHHHHHHHHh
Q 002363 738 LKAIGDPVFFRFKELTAR--------PASVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSWLDEKENDQ 809 (930)
Q Consensus 738 L~~~~~pi~~R~~e~~~r--------p~ai~~l~~~l~~~~~~~~~~~~~~~~it~~e~~~l~~~~~~~~~Wl~~~~~~Q 809 (930)
=+.-...+..+|.+.... -.|+..|.+.|..+......+.+-...=...+-.++...+..-..+|.+.+..-
T Consensus 134 nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~I 213 (560)
T PF06160_consen 134 NREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDI 213 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hcCCCCCCCcccHH---HHHHHHHHHHHHHHhhhcC
Q 002363 810 KKTSGFSKPAFTSE---EVYEKILKLQDKINSINRI 842 (930)
Q Consensus 810 ~~~~~~~dP~~~~~---di~~k~~~l~~~~~~l~~k 842 (930)
|.+... ++..++..|+.-+..+...
T Consensus 214 --------P~l~~~l~~~~P~ql~eL~~gy~~m~~~ 241 (560)
T PF06160_consen 214 --------PKLYKELQKEFPDQLEELKEGYREMEEE 241 (560)
T ss_pred --------HHHHHHHHHHhHHHHHHHHHHHHHHHHC
No 262
>PRK04863 mukB cell division protein MukB; Provisional
Probab=20.96 E-value=2.3e+03 Score=29.40 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 002363 703 EERQSFVEKLDEAQEWLYTD 722 (930)
Q Consensus 703 ~er~~l~~~l~e~~~WL~~~ 722 (930)
..+..|...+..+..|+...
T Consensus 321 ~rL~kLEkQaEkA~kyleL~ 340 (1486)
T PRK04863 321 EAESDLEQDYQAASDHLNLV 340 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44667777777777776543
No 263
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=20.96 E-value=1.9e+02 Score=31.91 Aligned_cols=47 Identities=17% Similarity=0.081 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHHHHHHHHHHhCC
Q 002363 344 EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGR 393 (930)
Q Consensus 344 ~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~V~~~l~~~fg~ 393 (930)
...+..+.+.|+++|++++++.++|+++++..++ +.+.+.+.+.+|-
T Consensus 215 ~~~~~~~~~~i~~~l~~~g~~~~di~~~~~h~~~---~~~~~~~~~~lg~ 261 (319)
T PRK09352 215 KFAVRELAKVAREALEAAGLTPEDIDWLVPHQAN---LRIIDATAKKLGL 261 (319)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHhCC
Confidence 3445667889999999999999999999998775 4455677777764
No 264
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.80 E-value=2e+03 Score=28.69 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 002363 646 SLSKEALVDAEAKLEELDK 664 (930)
Q Consensus 646 ~ls~~~l~~~~~~l~~~~~ 664 (930)
+.+++....+.+.+..|..
T Consensus 774 ~~s~~~v~~le~~l~~~~~ 792 (1293)
T KOG0996|consen 774 GVSKESVEKLERALSKMSD 792 (1293)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 4566676666666665543
No 265
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=20.75 E-value=1e+03 Score=31.47 Aligned_cols=44 Identities=11% Similarity=0.056 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhhc
Q 002363 647 LSKEALVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKF 690 (930)
Q Consensus 647 ls~~~l~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iY~~r~~l 690 (930)
+++.++..+...+..+...+....+..+....++.-+.++++.+
T Consensus 150 ~~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~ 193 (1164)
T TIGR02169 150 MSPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLII 193 (1164)
T ss_pred CCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666555555554444444444444444444444444444444
No 266
>PRK13318 pantothenate kinase; Reviewed
Probab=20.67 E-value=83 Score=33.85 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=15.3
Q ss_pred EEEEEcCccceEEEEE
Q 002363 26 VSSVDLGSEWLKVAVV 41 (930)
Q Consensus 26 vvGIDfGTt~s~va~~ 41 (930)
+++||+|+|+++++++
T Consensus 2 iL~IDIGnT~iK~al~ 17 (258)
T PRK13318 2 LLAIDVGNTNTVFGLY 17 (258)
T ss_pred EEEEEECCCcEEEEEE
Confidence 7899999999999999
No 267
>PRK12440 acetate kinase; Reviewed
Probab=20.17 E-value=3e+02 Score=31.67 Aligned_cols=46 Identities=13% Similarity=0.072 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCccEEEEEcCCCCcHH-HHHHHHHHhC
Q 002363 343 CEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPK-LQAKLQEYLG 392 (930)
Q Consensus 343 ~~~~~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~-V~~~l~~~fg 392 (930)
++-++.|+.+.|-......+ .+|+|+++||-+.... |++.|.+.++
T Consensus 300 ~d~f~yri~k~Ig~~~a~l~----gvDaiVFTgGIGen~~~vr~~i~~~l~ 346 (397)
T PRK12440 300 FEVFTYRVAKYIASYLAALD----SLDGIIFTGGIGENSLPIRREILKNLK 346 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhC----CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 34466666666665554433 6999999999988766 9999998765
No 268
>PRK03918 chromosome segregation protein; Provisional
Probab=20.05 E-value=7e+02 Score=31.93 Aligned_cols=51 Identities=20% Similarity=0.129 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHhHHhh
Q 002363 700 STSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDVLKAIGDPVFFRFKEL 752 (930)
Q Consensus 700 ~~~~er~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~ 752 (930)
..+++.+.+...+.+++..+..- ......+..++..|+.-..-+...+...
T Consensus 656 ~~~~~~~~l~~~~~~l~~~l~~l--~~~~~~l~~~i~~l~~~i~~~~~~~~~l 706 (880)
T PRK03918 656 YSEEEYEELREEYLELSRELAGL--RAELEELEKRREEIKKTLEKLKEELEER 706 (880)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777542 1244455555555555444444433333
Done!